KEGG   Pan troglodytes (chimpanzee): 452518
Entry
452518            CDS       T01005                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr03410  Base excision repair
ptr04140  Autophagy - animal
ptr04217  Necroptosis
ptr04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    452518 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    452518 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    452518 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    452518 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ptr03036]
    452518 (HMGB1)
   03400 DNA repair and recombination proteins [BR:ptr03400]
    452518 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ptr04147]
    452518 (HMGB1)
Chromosome and associated proteins [BR:ptr03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    452518 (HMGB1)
DNA repair and recombination proteins [BR:ptr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     452518 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     452518 (HMGB1)
Exosome [BR:ptr04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   452518 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 452518
NCBI-ProteinID: XP_001140491
Ensembl: ENSPTRG00000048008
UniProt: A0A6D2XKS4 A0A2J8MLR6
Position
13:complement(11547580..11553708)
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEDDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg
caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagatatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaacctatatccct
cccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg
tccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaaggatattgct
gcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggacgatgaggaagatgaagaggatgaggaggaggag
gaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (11)   
   UniProt (2)   
   RefSeq(pep) (9)   
DNA sequence (17)   
   RefSeq(nuc) (9)   
   GenBank (4)   
   EMBL (4)   
Protein domain (5)   
   Pfam (5)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system