KEGG   Photorhabdus thracensis: VY86_00630
Entry
VY86_00630        CDS       T03944                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ptt  Photorhabdus thracensis
Pathway
ptt03030  DNA replication
ptt03410  Base excision repair
ptt03420  Nucleotide excision repair
ptt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VY86_00630 (ligA)
   03410 Base excision repair
    VY86_00630 (ligA)
   03420 Nucleotide excision repair
    VY86_00630 (ligA)
   03430 Mismatch repair
    VY86_00630 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptt03032]
    VY86_00630 (ligA)
   03400 DNA repair and recombination proteins [BR:ptt03400]
    VY86_00630 (ligA)
Enzymes [BR:ptt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     VY86_00630 (ligA)
DNA replication proteins [BR:ptt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VY86_00630 (ligA)
DNA repair and recombination proteins [BR:ptt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     VY86_00630 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VY86_00630 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     VY86_00630 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VY86_00630 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RUBY_RBDX 5_3_exonuc RNA_ligase DZR_2 RNA_lig_T4_1
Other DBs
NCBI-ProteinID: AKH62081
UniProt: A0A0F7LJM5
Position
complement(202282..204300)
AA seq 672 aa
MKSTAQQIENLRITLRHHEYLYYVMDAPEIPDAEYDRLMQELKALEEQYPELITSDSPTQ
RVGAAPLTAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDDQDLVVCCELKLDGLA
VSLLYEKGELVQAATRGDGTTGENITSNVRTIYAIPLRLTGENIPTRVEIRGEVFIPQKG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGVLEGGELPASHY
ERLIQFKQWGLPVSDKIKVCTDSQQVIDFYHDIENQRSTLGFDIDGVVIKVNSLELQKTL
GFVARAPRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVTVSNATLHN
ADEIERLGLRIGDTVVIRRAGDVIPKVVGVVEDRRPQDSDEIVFPEHCPVCGADVERIEG
EAVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVETPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGETTAANLAAHFGCLDKLRA
ADEEALQEVQDVGEVVAKHVVNFFNEPHNQKVIDDLIDNTGINWEQVVVTKAEKIDSPFA
GKTIVLTGSLHQLSRDEAKDKFVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPV
IDEEEMIRLLGE
NT seq 2019 nt   +upstreamnt  +downstreamnt
atgaaatcaactgctcaacaaatagaaaatctcagaataacattgcgtcatcatgaatat
ctgtattatgtcatggatgcaccagagatccctgatgcagaatatgatcggttaatgcag
gaattaaaagctcttgaggaacaatacccggagctgattacatctgattcaccgacacag
cgggttggcgctgctcctctgactgcttttgaacaagtccgccatgaaattcctatgcta
tcactggataacgtattcgatgaagagagttatttggcgtttgataagcgagtgcgtgac
cgcctgaaagatgatcaggatttagtggtgtgctgtgagctgaaactggatggtttggct
gtcagtctgttgtatgaaaagggtgaactggtacaggcggcgacccgtggtgatggtaca
acaggggaaaacatcacatcaaatgtacggactatctacgcaattcccctgcgcttgacc
ggagagaatattccaactcgtgttgaaattcgtggtgaagtttttataccccaaaaaggg
tttgagaagctgaatgaggaagcacgccgcactggtgcaaaagtgtttgccaatccacgt
aatgcagcggctggctctctgcgtcagctcgatccccgtattaccgctaaacggccattg
gctttcttctgttatggtgttggtgtattggaaggaggggaattgccggccagtcactac
gagcgattgatacagtttaagcaatggggattgccggtcagcgataaaattaaggtttgt
actgatagtcaacaggttattgatttttaccacgatattgaaaaccagcgttcaacattg
gggtttgatattgacggtgttgttatcaaagtaaattcgctggaattacagaaaacgtta
ggctttgtcgcccgtgcgccacgctgggcaacagcattcaaatttcctgctcaggagcag
atgacgattgtccgtgatgttgaatttcaggtcggtcgtactggtgctatcacaccggta
gcgcgtctggagccggtgcaggtctctggtgtaactgttagtaatgcgacattgcacaat
gcggatgagattgaacgtttaggtttgcgtattggcgatactgtggttattcgtcgtgct
ggtgatgttattccaaaggtcgtgggtgttgtggaggacagaaggccacaggacagcgat
gaaattgttttccctgaacattgtccggtgtgtggggcggatgttgagcggattgaaggg
gaggctgttgcgcgctgtactggtggtttagtctgtggagcccagcgtaaagaagcactg
agacactttgtttcccggcgagcgatggatgttgacggtatgggagaaaagattattgat
caactggtggataaagagtatgtcgaaaccccggcggatctttttaggcttactgcgggt
aaattgaccgggcttgatcgtatggggccgaaatccgcgcaaaatgtggtagatgcgttg
gaaaaagcgaaaaaaactacgtttgctcgtttcctttatgcgttggggatccgtgaagtt
ggggaaacgaccgctgctaacctggccgctcactttggctgcctggataaattacgtgcc
gctgatgaagaagctctgcaagaggtccaggatgttggtgaagtagtggcaaaacacgtg
gttaacttcttcaatgaacctcataatcaaaaagttatcgatgacctgattgataatacc
ggtatcaactgggagcaagttgtcgtcacaaaggctgagaagattgacagcccattcgca
ggtaaaacaattgtgcttactggctcattgcatcagttatctagagatgaagccaaagat
aaatttgttgcgcttggggcaaaagtgactggtagtgtttctaagaaaacagatttggtg
attgctggtgaagcagctggttcgaaattggctaaagctaatgagttaaatattccagtt
attgatgaagaagaaatgatccgtttattgggtgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (33)   

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