KEGG   Photorhabdus thracensis: VY86_06830
Entry
VY86_06830        CDS       T03944                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
ptt  Photorhabdus thracensis
Pathway
ptt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ptt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VY86_06830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptt03021]
    VY86_06830
   03400 DNA repair and recombination proteins [BR:ptt03400]
    VY86_06830
Enzymes [BR:ptt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VY86_06830
Transcription machinery [BR:ptt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VY86_06830
DNA repair and recombination proteins [BR:ptt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VY86_06830
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: AKH63087
UniProt: A0A0F7LMT6
Position
complement(1673468..1674457)
AA seq 329 aa
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADIIHDGD
VEIVKPQHVICHLTDETASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgtgacagagtttctaaaaccgcgcctggttgatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggtcatactctaggc
aacgcactgcgccgtattctgctttcgtctatgccgggttgtgcggtgactgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggtgtacaggaagatatcctggag
attctcctcaacctgaaagggctggcggtaagagttcagggcaaagatgaagttattctt
accttgaataagtctggcattggccctgtgactgcagccgacattatccatgacggagat
gtcgaaatcgtcaagccgcaacatgtaatctgccacctgactgacgaaactgcttctata
agcatgcggattaaagttcagcgtggtcggggttatgtgccggcttctgcccggattcat
tcggaagaagatgagcgccctattggtcgtttgttagtagacgcttgttatagcccagta
gagcgtattgcctacaatgttgaagcagcgcgtgtagaacaacgtaccgatttggacaag
ttggttatcgagatggaaactaacggtacaatcgatcctgaagaggcgattcgccgtgca
gctactattttggctgaacagctggaagcttttgttgatttacgtgatgtacgtcagcca
gaagtaaaagaggagaagccagagtttgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgtcttaaggcagaagctatccactacatcggtgat
ttggtacagcgtaccgaggttgagttgcttaagacacctaacctgggtaaaaaatctctc
acagagatcaaagacgtactggcttcacgtggcttatctctaggcatgcgcttggaaaac
tggccaccagcaagtattgctgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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