KEGG   Candidatus Pelagibacter ubique: SAR11_1083
Entry
SAR11_1083        CDS       T00257                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pub  Candidatus Pelagibacter ubique
Brite
KEGG Orthology (KO) [BR:pub00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pub03032]
    SAR11_1083 (topA)
   03400 DNA repair and recombination proteins [BR:pub03400]
    SAR11_1083 (topA)
Enzymes [BR:pub01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SAR11_1083 (topA)
DNA replication proteins [BR:pub03032]
 Prokaryotic type
  DNA Topoisomerases
   SAR11_1083 (topA)
DNA repair and recombination proteins [BR:pub03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SAR11_1083 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: AAZ21887
UniProt: Q4FLQ1
Position
1048935..1051526
AA seq 863 aa
MNLVVVESPAKAKTINKYLGDDYIVLASYGHIRDLPSKNGSVDPENNFKMEWEVDSFSKK
YLKEITDAAKISSKIILATDPDREGEAIAWHVKEYLNEKKLIKDKHIERVVFNEITKKAV
IHGIENPRQIEPLLVDAYMARRALDYLVGFNISPILWTKLPGSKSAGRVQSVALKLITER
EHEIELFDPEEFWTLSIQFNDSNKNSILASITQLNDKKIEKFSFKNKAEIDKAMKEVKSK
NFNINDISSKVVNRNPSGPFTTSTLQQVSSGRLGFGASRTMQIAQKLYQGIEIDGETIGL
ITYMRTDGTNLSTDAIDTFRKYIKNEFGDEYVPDNAASYSGKKAKNAQEAHEAIRPTDIM
RAPDTVKKYLSPDQHKLYDLIWSRALSSQMKPAQFDRNTITITSDDNGTICKASGSVIKF
DGFLKVMKDTKKDDDEDILPEMNKGPVNIESLLDEQHFTQPPPRYSEASLVKKLEELGIG
RPSTYASIISVISTRGYAETINKRFHPTDRGKLISAFLEKLFSKYVDYNFTASLENQLDD
ITTGKEGWIKVLELFWKDFNQNVSDVKEKRTREVLDLLNDSLGSLIFERDTEGNINRQCK
LCNGGSLSLKNSFRGGAFIGCSNYPDCKFTRPLSKAKAAAQSQLAEPKFIGKHENGNDMY
LKNGRFGPYLQYEKIEEIKDEIIIETKKKKKTKKKKIEKEDNNLRNVSIPKGITLDSVDL
DRAKFLCSLPKSLGINPENQRDIILNSGRFGPYLKCENKSARIENVEEIFSIGLNRAITL
IAEAKPGRMSASIIKDLGEHPEDKKPVRVMKGQYGPYIKYKSLNATIPEEKDPLELNMEE
ALILIEKRKEYDKNKKVKKKKKK
NT seq 2592 nt   +upstreamnt  +downstreamnt
atgaatcttgtagtcgtagaaagtccagctaaagcaaaaactatcaacaaatatcttggt
gatgattatattgttttagcgagttatggtcatattagagaccttccctcaaaaaatggt
tctgttgatccagaaaataattttaaaatggaatgggaagtcgatagtttttctaaaaaa
tatcttaaagaaattacagatgcagctaagatttcatcaaaaatcatattagcaactgac
ccagacagagagggagaagcaattgcttggcatgttaaagaatatttaaatgaaaaaaaa
ttaattaaagacaagcatatagaaagagttgtttttaatgaaattacaaaaaaagctgtt
attcatggaattgaaaaccctcgacaaatagagccattacttgttgatgcctatatggct
agaagagccttagactatttagttggctttaatatatcaccaattttgtggacaaagtta
ccaggttctaaatctgctggtcgtgttcagtcagttgccttaaaattaattacagaacga
gaacatgaaatagagctttttgatcctgaagaattttggactttaagtattcaattcaac
gatagtaataaaaattctatattagcaagtatcactcaattgaatgataaaaaaattgaa
aaattttcttttaaaaataaagctgaaattgataaagcaatgaaagaggttaaatctaag
aatttcaatataaatgacatctctagcaaagttgttaatagaaacccttctggccctttt
actacctccacattacagcaagtttcttctggtaggttaggatttggagcgtcacgtaca
atgcaaatagctcaaaaactttatcaaggtatagaaattgatggtgaaactattggtctt
atcacgtatatgcgaacagatggcactaacctgtccacagacgctatagatacttttaga
aaatatataaaaaatgaatttggtgatgaatatgttccagataacgctgcaagttactct
ggaaaaaaagctaaaaatgctcaagaagcacatgaagcaattagacccacagatataatg
cgagcaccagatacagttaaaaaatacctaagtccagatcagcataaattatatgattta
atttggagtagagccctatcctctcaaatgaaacccgctcaatttgatagaaatactata
acgataacttcggatgataatggaacaatttgtaaagctagtggatctgttattaaattt
gatggctttttaaaagttatgaaagatactaaaaaagatgatgatgaagatatccttcct
gaaatgaacaagggtccagttaatatagaatctctattagatgaacagcattttacacag
ccaccaccaagatattcagaagctagtttggttaagaaattagaagaattaggtattgga
agaccttcaacatatgcaagtataatatctgttatatctactagaggatatgcggaaaca
attaataaaagatttcacccaactgatcgtggtaaattaatttctgcttttcttgaaaag
cttttctctaaatatgttgactataatttcactgcaagtttagaaaatcaacttgatgat
attactaccgggaaggaaggatggataaaagttctagagttattttggaaagactttaat
caaaacgtatctgacgttaaagagaaaagaactagggaggttttagatctattaaacgat
agtctaggaagtttaatttttgaaagagatacagaaggaaatattaatagacaatgcaag
ttatgtaacggtggatcattaagtttaaaaaatagttttagaggtggtgcttttattggt
tgctcaaattatccagattgtaaatttaccagacccctgtctaaagcaaaagcagctgct
caatctcaattagctgaaccaaaatttataggtaagcatgaaaatggaaatgacatgtac
cttaaaaatggaaggtttggtccctacttacagtatgaaaaaattgaggaaataaaagat
gagattataattgaaacaaaaaagaaaaaaaaaacaaaaaaaaaaaagatagaaaaagaa
gataataatttaagaaatgtctcaatacctaaaggaattacattagatagcgttgatctt
gatagagctaaatttttatgctcattaccaaaaagtttaggcattaaccctgaaaatcag
agagatataatattaaactcaggaagatttggcccatatttgaaatgtgaaaacaaatca
gcaaggattgaaaatgttgaggagatcttctcaattgggcttaatagagcaataactcta
atagcagaggctaaacctggtagaatgtctgcatcaattataaaagatctaggagagcac
cctgaagacaaaaaacctgttagagtaatgaaaggacaatatgggccttatattaaatat
aaatctcttaatgcaacaattccagaggaaaaagaccctttagaacttaatatggaagaa
gctttaatattaattgagaaaagaaaagaatacgataaaaataaaaaagttaaaaaaaag
aaaaagaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2295)   
   KEGG ORTHOLOGY (1)   
   RefGene (2292)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (2308)   

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