KEGG   Psychrobacter urativorans: AOC03_02380
Entry
AOC03_02380       CDS       T04087                                 
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K14159  ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
Organism
pur  Psychrobacter urativorans
Pathway
pur03030  DNA replication
pur03430  Mismatch repair
pur03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pur00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AOC03_02380
   03430 Mismatch repair
    AOC03_02380
   03440 Homologous recombination
    AOC03_02380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pur03032]
    AOC03_02380
   03400 DNA repair and recombination proteins [BR:pur03400]
    AOC03_02380
Enzymes [BR:pur01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AOC03_02380
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.4  ribonuclease H
     AOC03_02380
DNA replication proteins [BR:pur03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     AOC03_02380
    RNase H
     AOC03_02380
DNA repair and recombination proteins [BR:pur03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     AOC03_02380
SSDB
Motif
Pfam: RNase_H RNase_T Rv2179c-like RNase_H_2 DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: ALF59036
UniProt: A0A0M4TU07
Position
570630..572255
AA seq 541 aa
MSDHFIAAPYVTNHNATDPLAAKTDATVAYADGACKGNPGAGGWGAHLIFSNGQTQDLYG
GDSETTNNRMELMGAIQALNHSPRELKLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKP
VANQDLWQQLDELCQARDVDWYWVKGHAGHAGNEKADELANLGVTSNSGHAIVNNEQSPV
ATNDNVSENINDSIRKKKVSLMSDKTEILSDDDWLTNDILGFDMLDDDSDEEFSAEPHDT
ILTELSLIESNHQPNNATPPMSAHIMTADSLIIDHRESDVSVDLPKFDGDTSRANPHFRP
LLPKPIHRHEANRQLIMDTETTGLDPLKGDRVIEVGIVEMIGRKFTGEKLHVYINPQRGM
DEVVIRIHGISEAFLADKPTFDQVAQPLYEFMDGAEIIAHNASFDMSFLSMEFSKVGITD
FAQRVQVTDSLVMAKQQYPGQKNTLDALVRRLNVGKQDRTFHGALLDSEILAEVYLAMTG
GQVSLAIEEEGQSDGGQTAHTQFATLAALLVESSTDSSENQNWFASLADQYPEIKTKMAQ
W
NT seq 1626 nt   +upstreamnt  +downstreamnt
atgtcagaccactttatagcagcaccatacgtcaccaaccataacgccactgacccgcta
gcagccaaaactgacgcaacggtggcttatgccgatggtgcatgtaaaggcaaccctggt
gcaggaggttggggtgcgcatctgatatttagtaatgggcaaacgcaagatttgtacggt
ggcgattccgaaaccaccaataatcgcatggagctgatgggggcaattcaagcgctcaat
cacagtccacgtgagttaaagctagaaatttggacagactccagttatgtcaaaaaaggg
ataacggagtggattgaaggttggaaaaaaagaggctggaaaacagccagtaaaaaacca
gtcgccaatcaagacttatggcagcaattagatgagctttgccaagcacgcgatgtagat
tggtactgggtaaaaggtcatgctggacatgccggtaatgaaaaagcagacgagctagcc
aaccttggcgttacctctaacagtggtcatgcaattgtaaataatgaacaatcgccagtc
gccactaatgataatgtgagtgaaaatattaatgacagtatccgtaaaaaaaaagtgtcg
ttaatgtctgataaaactgaaatactatccgatgatgattggctcacaaacgatatttta
ggctttgacatgttggatgatgactcagatgaggaattctccgccgaaccccacgacact
attttaactgagctgtctttaattgaatccaatcaccaaccgaataacgcgacaccgccg
atgagtgctcatatcatgaccgcagacagcttaataatagaccaccgtgaatcagacgtg
tcagtagacttgccaaaattcgatggtgataccagtcgtgccaacccacactttcgtccc
ttattgcccaagcctattcatcgtcatgaagccaatcgacagctgattatggatacggaa
accacaggattagatccactcaaaggggatcgcgtcattgaagtcggtattgtggagatg
attggtcgtaagtttaccggtgaaaagctgcatgtctatatcaatccacagcgtggcatg
gatgaagtggtcattcgtattcatggtatctctgaggcatttttagctgacaaaccaact
tttgatcaagtcgcgcaacctttgtacgagtttatggatggcgcagaaatcatcgctcat
aacgcctcatttgatatgagcttcttgtccatggaatttagcaaagtgggtattacagat
tttgctcagcgcgtgcaggtaaccgactcattggttatggcaaaacagcaatatccggga
caaaaaaacacgcttgatgcgcttgtacgtcgtttaaacgttggtaagcaagaccgtacc
tttcacggcgcattattggactcagagattttagctgaagtctatttagcgatgacgggg
ggtcaagtatccttagccattgaagaagaaggtcaatctgatggcggacaaaccgctcat
actcagttcgccacgcttgccgctttattagtagagtctagtactgacagtagcgaaaat
caaaactggtttgcaagtttggcagatcaatatccagaaattaaaactaaaatggcacaa
tggtaa

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