KEGG   Pantoea vagans C9-1: Pvag_0886
Entry
Pvag_0886         CDS       T01326                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pva  Pantoea vagans C9-1
Pathway
pva03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pva00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pvag_0886 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pva03019]
    Pvag_0886 (rne)
   03009 Ribosome biogenesis [BR:pva03009]
    Pvag_0886 (rne)
Enzymes [BR:pva01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Pvag_0886 (rne)
Messenger RNA biogenesis [BR:pva03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Pvag_0886 (rne)
Ribosome biogenesis [BR:pva03009]
 Prokaryotic type
  rRNA processing factors
   Pvag_0886 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: ADO09083
UniProt: E1SJN2
Position
complement(922768..926178)
AA seq 1136 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDLPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEVKRTEAQPAAKSAPTVAAPATVSTGFFGRLLGGLKKMFAGEEAPAAAPVATEV
AEPQKATEEQESNSGRGERRSNNNNRRNNNRRERTPRNGDNAQSRESREPRESREPRESR
EPRESREPRESREPRDGNDNRRNKRQSQTGEVREERPALSEEARQQRDEQQQQRREQRAE
RQRRRQEEKRAGEEAAKAAEQPAVVAEALDVTEAQDDERVQVMPRRKPRQLNQKVRVDDN
RPPMPAEASDIAQPAEVRQSQPADVAQTQPEFQASQSDEQDDNDSRDNANMPRRSRRSPR
HLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQVQNVMHET
PAYNSEETADATPALPVAAAVESVAQDAPVQQAEPQAETPVAIVNTDDTRAIDAPVDEQP
SVVPAADEAKAEAVAAEAVPAEPVTETVVVTPAAEVSQPVDVAQSADVAEQSATDVSEAI
AAEVEEVLNAPVAANAEIAPVSEPHAPVAARDVAPAAPVTAVESVSSAPAAEAVPNDGTR
WKHYASAPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGGHSATHQATAPATKP
NT seq 3411 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcactcgcatcgaacccagccttgaagctgcgtttgtcgattat
ggcgcagagcgtcacggtttcctcccgttaaaagaaatttcccgcgaatatttcccctcc
agctataacgcacatggtcgtccgaatattaaagacgtgctgcgtgaaggccaggaagtc
attgttcagatcgataaagaagaacgcggcaacaaaggcgctgcgctgacaacctttatc
tctctggcgggcagctacctggtactgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgatcgtaccgaactgaaagaagccctgtcagcgctggatctg
ccggaaggcatgggcctgattgtgcgcactgccggcgttggtaaatctgccgagtcgttg
cagtgggatttaagcttccgtctcaaacactgggaagcgattaagaaagccgctgaaaac
cgccctgctccgttcctgatccatcaggagagcaacgtgattgtgcgtgccttccgcgac
tatctgcgtcaggacatcggtgaaatccttatcgataacccgaaagtgcttgaactcgcg
cgtcagcatatcgcggcgctgggtcgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatccccctgttcagccactatcagatcgaatcgcaaatcgaatccgccttccag
cgtgaagtccgcctgccttccggtggttcgattgtgatcgacagtaccgaagcgctgacc
gctatcgatatcaactcagctcgcgccacgcgtggcggtgacatcgaagagacggccttc
aacaccaaccttgaagcggccgatgagattgcccgtcagctgcgcctgcgtgacctgggc
ggcctgatcgttatcgattacatcgatatgacgccggtacgccatcagcgcgccgttgag
aaccgtctgcgtgaagctgtccgtcaggaccgtgcccgtattcagatcagccacatttca
cgtttcggcctgctggagatgtcccgtcagcgtctgagcccgtcattaggtgaatccagt
catcacgtctgcccacgctgtagcggcaccggcaccatccgtgataacgagtcactggcg
ctgtccattctgcgtctgattgaagaagaagcgctgaaagacaacaccaaagaagttcac
gccattgttccggttcaggttgcttcttacctgctgaatgaaaaacgtgaagcggttaac
gcgatcgaaaaacgccagggtggcgttcgggcaatcatcgttcctgatgacaagatgcag
accccgcactactccgtactgcgcgtacgtaaaggcgaagagacgcagaccctgagttat
catctgccgaagctgcatgaagccgaaatggcgatgccatcggaagaggaacatgctgag
cgccgtcgtcctgagcagcctgctctggccgcctttgtgatgcctgatgcgcctcctgcg
ccggtagaagttgagccagaagtgaagcgcactgaagctcagccagcagcaaaatcagcc
ccgactgttgctgcaccagcgaccgtcagcaccggtttcttcgggcgtctgcttggcggc
ctgaaaaaaatgttcgctggcgaagaagcgcctgctgctgcaccagtggccactgaggtt
gctgaaccgcagaaagcgactgaagagcaggaaagcaacagtggtcgtggcgagcgccgc
agcaacaataacaaccgtcgtaacaacaatcgccgtgaacgtacgccgcgtaacggtgac
aatgcacagtcccgtgaaagccgtgaaccacgcgaaagtcgcgagccgcgtgaaagccgt
gaaccgcgcgaaagtcgtgagccacgtgaaagccgcgagccgcgcgatggcaacgacaac
cgtcgcaacaagcgtcagtctcagacgggtgaagtgcgcgaagagcgtccggcactgagc
gaagaagcgcgtcagcagcgtgatgagcagcagcaacagcgccgtgaacagcgtgctgaa
cgtcagcgtcgtcgtcaggaagagaaacgtgccggtgaagaagcggccaaagccgctgag
cagccagccgtcgttgctgaagctctggacgtcactgaggcgcaggatgatgaacgcgtt
caggttatgccgcgtcgtaagccgcgtcagcttaaccagaaggtgcgtgtggatgataac
cgtccgcctatgccagccgaagccagcgacattgcccagcctgctgaagtgcgtcagtca
cagccagctgacgttgctcagacacagcctgagttccaggcttcgcagagtgacgagcag
gatgacaacgacagccgtgataacgccaatatgccgcgtcgttcacgtcgttcaccacgt
catctgcgcgtcagcggacagcgtcgtcgtcgttaccgtgatgagcgttacccgacgcag
tcagctatgccactggccgctgccgctgcttcacctgaaatggcatctggcaaagtctgg
attcgctatccggtgagccaagccagcgaagagcaggttcagaatgtaatgcatgagacg
ccagcttataacagcgaagagaccgcagacgcgacccctgcgctgccggttgctgccgcc
gttgaatcggttgctcaggatgcaccagtgcaacaggccgagccgcaggcagaaacgccg
gtggcgatcgtcaacactgacgatacccgtgctatcgacgccccggttgatgagcagcct
tctgttgttccggctgctgatgaagccaaagcggaagctgtagcggctgaagctgtgcct
gctgagccggtcaccgaaacagtggtggtaacgccagctgctgaggtttcacagcctgtc
gacgttgcacagtctgccgacgttgctgagcagtcagctactgatgtcagcgaagcgatc
gcagcagaggtggaagaagtgctgaacgcgccggttgctgctaacgctgaaatcgcgcca
gtcagtgaacctcatgcgccggttgccgcgcgtgatgtcgcgcctgcagcaccggtaacg
gcggtcgagtctgtctcatcagcgccggctgctgaagcggtgccaaatgacggtacgcgc
tggaagcactatgcctctgcgccgatgactaaagcgcctgcgccggtctggcagtcagaa
cccgctccgcacagtgactgggtccgtgcgccgtatgagttcgacggtcgtggttctgcg
ggtggtcatagcgccacccatcaggccactgccccggcgacaaagccgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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