KEGG   Pantoea vagans C9-1: Pvag_1495
Entry
Pvag_1495         CDS       T01326                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pva  Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:pva00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pva03032]
    Pvag_1495 (topA)
   03400 DNA repair and recombination proteins [BR:pva03400]
    Pvag_1495 (topA)
Enzymes [BR:pva01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Pvag_1495 (topA)
DNA replication proteins [BR:pva03032]
 Prokaryotic type
  DNA Topoisomerases
   Pvag_1495 (topA)
DNA repair and recombination proteins [BR:pva03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Pvag_1495 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom DUF2399
Other DBs
NCBI-ProteinID: ADO09685
UniProt: E1SEQ3
Position
complement(1578070..1580694)
AA seq 874 aa
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSTAKKSADASTDKKVKDAS
TDKKVKKVKKDEKAALVSRMGVDPYHGWEADYQILPGKEKVVAELKALAANADHIYLATD
LDREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFM
DRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVNAALTTPKG
DELSMDVTHKGDKAFRPVNRDETYAAVALLEKARYEIVDREDKPTSSKPGAPYITSTLQQ
AASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGYIESNFGKKYLPET
AITYASKENSQEAHEAIRPSDVEVVAEKLKDMEADAQKLYQLIWRQFVACQMTPAKYDSS
TITAAAGEFKLKAKGRILRFDGWTKVMPALRKNDEDRTLPAVSVGDVLDLQQLLPGQHFT
KPPARFSEASLVRELEKRGIGRPSTYAAITSTIQDRGYVRVENRRFYAEKMGEIVTDRLE
ENFRELMNYDFTARMESNLDQVANNEAQWKAVLDHFFADFTQQLELAEKDPEEGGMQPNQ
MVLTSIECPTCSRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDA
ETNALRARRRCQKCGTAMDSYLIDNERKLHVCGNNPECDGYEIEKGEFRIKGYDGPVVEC
EKCGSEMHLKMGRFGKYMACTNEECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFV
LRDGAAGVFLAANTFPKSRETRAPLVEELQRFKDRLPEKLKYLADAPAADPEGNKTLVRF
SRKTKQQYVSSEKEGKATGWSAFYIDGKWQEAKK
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgggtaaagcactcgttattgttgagtccccggcaaaggctaaaacaatcaataaatac
ctgggtagtgactacgtggttaaatccagcgtgggtcatatccgggatctgccgaccagt
ggttcaaccgcgaagaagagtgctgacgcttcgacagataagaaagtcaaagacgcttca
actgacaagaaagtcaaaaaagttaaaaaagatgagaaagccgcactcgtcagccgcatg
ggtgtagacccttatcacggctgggaagcggattatcagattctgcccggcaaagagaaa
gtcgttgctgaactgaaggcgttagccgccaatgctgaccacatctatctcgcaaccgac
cttgaccgcgaaggggaagccattgcctggcacctgcgggaagtgatcggtggtgatgac
tcgcgcttcagccgcgtggtctttaacgaaatcaccaagaatgcgattcgtcaggcgttt
gaaaagccgggcgaactgaatattgaccgggtaaatgctcagcaggcgcgtcgtttcatg
gaccgcgtggtgggctacatggtctcgccactgctgtggaaaaaaattgcccgtggcctc
tcggccggacgtgtgcaatctgttgcggttcgcctggtggtggaacgtgaacgtgagatc
aaagcctttgttcccgaagagtactgggaagttaatgccgcactgaccacgccaaaaggc
gatgagctgtccatggacgtgacgcacaaaggtgataaagccttccgtccggtcaatcgc
gacgagacctatgccgcggtggcgctgctggaaaaagcgcgctatgagatcgtcgaccgt
gaagataagccgaccagcagcaagccgggcgcgccttatatcacctcgacactgcagcag
gctgccagcacccgtctgggctttggcgtgaagaaaacgatgatgatggctcagcgcctg
tacgaagccggtcacatcacctatatgcgtaccgactcgaccaacctgagtcaggatgcg
gtcgccatggcgcgtggctatatcgaaagcaatttcggtaaaaagtatctgcctgaaacc
gccattacttacgccagtaaagagaattcccaggaagcgcacgaagcgattcgtccttcc
gacgtggaagtggtggcggaaaagctgaaggatatggaagcggatgcgcagaaactctat
cagctgatctggcgtcagtttgttgcctgtcagatgacaccagcaaaatatgattccagc
accattacagcggcggcgggtgaatttaaactcaaagcaaaaggccgtattctgcgtttt
gatggctggaccaaagtcatgccagcgctgcgtaagaatgatgaagatcgtacattgcct
gccgtcagcgtgggtgatgttctggatctgcaacagcttcttccgggccagcacttcacc
aagccaccggcgcgcttcagcgaagcgtcactggtgcgtgaacttgagaagcgcggcatt
ggtcgtccatccacgtacgcagccattacctcgaccattcaggatcgcggctacgtgcgg
gtagaaaaccgccgcttctatgcggaaaaaatgggtgaaatcgtcaccgatcgtctggaa
gagaacttccgcgaactgatgaactacgatttcaccgcccgcatggagagcaatctcgat
caggtggcgaataacgaggcgcaatggaaagcggttctcgatcacttcttcgccgatttt
actcagcagcttgaactggctgagaaagatcctgaagagggaggcatgcagccgaaccag
atggtgctgacctcgattgagtgtccgacctgtagccgtcagatgggaatccgtaccgcc
agtaccggcgttttcctgggctgttccggctatgcgctgccgcctaaagagcgatgcaaa
cagaccatcaacctgattccggaaaatgaagtcctcaatattctggaaggcgatgatgct
gaaaccaacgccctgcgtgcccgtcgtcgctgccagaagtgtggcaccgcgatggacagc
tacctgatcgacaacgaacgtaaactgcacgtctgtggtaataacccggagtgtgacggt
tacgaaatcgagaagggcgagttccgtatcaaaggctatgacggcccggtggtggagtgc
gagaagtgtggttcggagatgcacctgaagatgggacgctttggtaagtacatggcgtgt
accaacgaagagtgcaaaaacacccgcaagattctgcgcagtggtgaagttgcaccgccg
aaagaagatccggttccgctgccagagctggcgtgtgagaagtccgatgcttacttcgtg
ttgcgtgacggcgcagcgggcgttttcctcgcggccaacaccttcccgaaatcacgcgaa
acgcgtgcgccgctggtggaggagcttcagcgcttcaaagatcgtctgcctgagaagctg
aaatatctggccgacgcgccagcagccgatccggaaggcaataaaacgctggtgcgcttc
agccgcaaaaccaaacagcagtatgtctcctctgaaaaagagggtaaggcaaccggctgg
tccgccttctatatagatggcaagtggcaggaagcgaaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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