KEGG   Candidatus Planktophila vernalis: A7sIIA15_00965
Entry
A7sIIA15_00965    CDS       T05319                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pvn  Candidatus Planktophila vernalis
Pathway
pvn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A7sIIA15_00965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvn03021]
    A7sIIA15_00965
   03400 DNA repair and recombination proteins [BR:pvn03400]
    A7sIIA15_00965
Enzymes [BR:pvn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A7sIIA15_00965
Transcription machinery [BR:pvn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A7sIIA15_00965
DNA repair and recombination proteins [BR:pvn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A7sIIA15_00965
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ASY19481
UniProt: A0A249KRR8
Position
183452..187264
AA seq 1270 aa
MLDVNFFDELRIGLASAENIREWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITVVDTEAREEDMPQLEKKLANDRKKIETRRDNDLDVRTKKLESD
LAELEAEDAKSDVKRKVRESAERELKSIRDRSERELDRLESVWTRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKHRLETFDLETEHKMLTDLSENGKGAKKTRAIKRLKVVN
AFLTTSNKPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITSPTQDMVLGLYYLTMVRDGELGEGR
AFSSIAEAIMAHDQHSVSLQAKIKIRLGNSTETIETTIGRALFNEALPADFPYVDIDVTK
KQLGGIVDRLAEFYPKVVVAQTLDALKALGFHWATRAGATIGIEDVVTPPRKKEILESYE
TQADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKEMEENFPRVNPVWMMVFSGARGN
MMQIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADS
GYLTRRLCDVAQDVIIREEDCGTDRGLVLQIGVRQESGGLVKFDHVETSVFGRTLADDVE
VDGKVILPAGTDLGDRNIDELVAAGVDEVKIRSVLTCDSKVGQCAACYGRSLAAGQRVAV
GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAETA
GVVSFREDVKGKKIVVTPDDGGEEVAYPITRRQKLLVEEGSRVEVGQKMVVGAIDPKQVL
RILGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDADLLPGELVE
RGRFETENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKS
DPLLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFDQQGSGEA
VRLDEVEIPR
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgttagacgttaacttctttgatgaactacgtatcggccttgcatcggctgagaatatt
cgcgaatggtcttttggcgaagtaaaaaagccagagacaattaactaccgcacacttaag
cctgaaaaggacggcctattcgacgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgttcgatttaagggaatcatctgcgagcgatgcggtgtt
gaagtaacacgtgcaaaggttcgtcgcgaacgtatgggtcacatcgagctagcagctcct
gttactcacatctggtacttcaagggtgttccatcacgccttggctacctacttgatctt
gctccaaaggatctagaaaaggttatttacttcgctgcttacatgatcacagttgttgac
acagaagcgcgtgaagaagatatgccacaacttgaaaagaagttggctaatgatcgcaag
aagatcgaaacacgtcgcgataacgatctagatgttcgtaccaagaagcttgaatcagat
ctagcagagcttgaagctgaagatgctaagtcagatgtgaagcgtaaggtccgcgaatct
gcagagcgtgaacttaagtcaatccgtgatcgttcagagcgcgagcttgatcgccttgaa
agtgtatggactcgctttaagaacttgaaggttcaagatcttgagggtgatgaaaacctt
taccgcgaaatgcgcgatcgttatggaatgtatttcaagggagatatgggtgctgctgca
attaagcatcgcctagagacttttgatcttgagactgagcacaagatgcttaccgacctt
tcagaaaatggaaaaggtgcaaagaagactcgtgcaatcaagcgcttgaaggttgttaac
gcattccttacaacaagcaacaagccagcatcaatggttcttgattgcgttccagttatt
ccacctgatctacgtccaatggttcaactcgatggtggtcgctttgcgacttcagatctc
aacgatctataccgccgcgttatcaaccgtaacaaccgtttgaagcgtctagctgatctt
ggtgcaccagagattatcgttaacaacgaaaagcgtatgttgcaggaagctgtagatgcc
ttgtttgataacggtcgtcgtggtcgtccagttacaggtccaggtaaccgtgcactgaaa
tcactttcagacatgctcaagggtaagcagggacgtttccgtcagaacttgctcggaaag
cgcgttgattactcaggtcgttcagtaattgttgttggtccacagttgaagctgcaccag
tgcggtcttccaaagcagatggcacttgaactcttcaagccattcgtaatgaagcgactt
gttgaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtgtgggatgttcttgaagaagttattgcagagcatccagtacttctcaaccgc
gcacctacccttcaccgtttgggtattcaagctttcgaaccacagttggtagaaggtaag
gcaattcagattcatccactcgtttgtacagcttttaacgctgacttcgacggtgaccag
atggcagttcacttgccgctatctgctgaagcacaggctgaagctcgtatcttgatgttg
tcttcaaacaacatcttgtcaccagctaacggtcgcccaattacttcaccaacacaggac
atggttcttggtctttattacttgaccatggttcgcgatggtgaactaggagaaggtcgt
gcatttagctcgattgcagaagcaatcatggctcatgatcaacattcagtttcattgcag
gcaaagatcaagatccgtcttggtaactcaactgaaactattgaaacaacaattggtcgc
gctttgtttaacgaagcgctcccagctgatttcccatatgtagacatcgatgtaactaag
aagcaacttggtggcattgttgatcgccttgctgagttctatccaaaggttgttgttgca
caaacgcttgatgcgttgaaggcacttggcttccactgggcaactcgcgcaggagcaact
attggtattgaagatgttgttacacctccacgcaagaaggaaatccttgagagctatgaa
acacaggctgacaaggttcaatctcaatatgaaaagggactcatcactgatgacgagcgt
cgtcaggaattgatcgagatctggacaaaggcaacagctgaagtgggtaaagagatggaa
gaaaacttccctcgcgttaacccagtttggatgatggtcttctctggtgctcgtggaaat
atgatgcagatccgtcagattgcaggtatgcgcggactcgtagcaaatccaaagggtgaa
attattcctcgcccaattaaatctaacttccgtgaaggtctttctgtacttgagtacttc
atttctactcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactct
ggttacctaacacgtcgtctttgcgacgttgctcaggatgtcatcatccgtgaagaagat
tgcggtactgatcgcggtcttgttctacagattggtgttcgtcaagaatctggcggccta
gttaagtttgatcacgttgaaacttcagtatttggtcgcacattggccgatgatgttgaa
gttgatggcaaggtcatcctgcctgctggcacagatcttggagatcgcaacattgatgaa
ctcgttgcagctggagtagatgaagtaaagattcgctcagttctaacttgcgatagcaag
gtcggacagtgcgcagcttgctacggtcgctcacttgcagcaggacaacgtgttgcagtt
ggtgaagcagttggaatcattgcagcacagtcaatcggtgagcctggtacacagctaaca
atgcgtaccttccacactggtggtgttgccggtgatgacatcactcacggtcttccacgt
atcgtcgagctcttcgaagcacgtacgcctaagggtgttgctccaatcgctgaaacagca
ggtgttgtttcattccgtgaggatgtaaagggcaagaagattgtcgtaactccagatgat
ggtggcgaagaagttgcttacccaattactcgtcgtcagaagctacttgtagaagaaggt
tcacgcgttgaagttggccagaagatggtcgttggcgcaattgatccaaaacaggtactt
cgtattcttggaccacgtgcaactcaagttcacttggtaaatgaaattcaatctgtttat
cgctcacagggcgtaggcattcacgataagcacatcgaagtaatcgttcgccaaatgcta
aagcgcatcacagtgcttgaagcaggagatgccgatctacttccaggtgagctcgttgag
cgcggtcgctttgagactgaaaaccgtcgcgtagttacgactggtggaaaggcagcctca
ggtcgcccagaacttatgggtatcactaaggcatcacttgcaactgaatcatggttgtca
gctgcttcattccaggaaacaactcgcgttctaaccgatgctgccctttcagagaagagt
gatccattgctcggactgaaggagaacgtcatcatcggtaagttgattccagcaggtact
ggtcttgctcgttaccgcaacattcgtgttgagccaacagaggaagccaaagccgctgtt
tatgcagcttatgatgaatatgacttcacaccatttgaccaacagggttcaggtgaagca
gtacgtcttgatgaggtagaaattcctcgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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