KEGG   Phaseolus vulgaris (common bean): PHAVU_001G042300g
Entry
PHAVU_001G042300g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PHAVU_001G042300g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvu03021]
    PHAVU_001G042300g
   03036 Chromosome and associated proteins [BR:pvu03036]
    PHAVU_001G042300g
Transcription machinery [BR:pvu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     PHAVU_001G042300g
   Coactivators
    SAGA/TFTC/STAGA complex
     PHAVU_001G042300g
Chromosome and associated proteins [BR:pvu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     PHAVU_001G042300g
    STAGA complex
     PHAVU_001G042300g
    TFTC complex
     PHAVU_001G042300g
    SAGA complex
     PHAVU_001G042300g
    SLIK complex
     PHAVU_001G042300g
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Ge1_WD40 Nup160 WD40_like PALB2_WD40
Other DBs
NCBI-GeneID: 18640337
NCBI-ProteinID: XP_007161096
UniProt: V7CUX8
Position
1:4347676..4361633
AA seq 658 aa
MDEDQIEGCVSGYLKQKGFAQNDDQLQLSNTDSSLQPDTLNRAQLERGSARYHDGYGRLR
SWAYRSLESYKHELLRVLYPVFIHCFMDLVSKGHLQEAWNFFNTFREDHEMMHSRDLQKL
ELVLSPAHLVEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSSTIIGIINEHVGFQVT
AGQPSSISDDPEAVTLSGSIQDAANKINQKEILWGMFEDSVEDHIDKSGALLSGTEKGEG
EGKEGDNDESKKRSIDVGKQGNSVKKVKKEKVSSATGKNAKPEANTISAAPRIKPELPLP
TVSTDVELSILEDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHNGSLLVGGFSDSS
LKVWDMAKLEQQSTTYFSHGGNDTSQNEHIIGQNSGRRQYTLFQGHSGPVYAATFSEAGD
FLLSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDR
IKPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLA
MSPDGRYMASGDEDGTIMTWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVK
LWDVTTGIKVPRNEEKSGNTNRLRSLKSLPTKSASVYSLQFSRRNLLFAAGALAKSGF
NT seq 1977 nt   +upstreamnt  +downstreamnt
atggacgaagatcaaatagaaggctgtgtgagtgggtacctcaagcagaaagggtttgcg
caaaacgatgaccaacttcaactttccaacaccgattcctctcttcaacccgacactctc
aatcgtgctcaattggagagaggttccgctagataccatgatgggtatggaagactaaga
tcatgggcatacagatcacttgaatcatacaagcatgagttgctgcgtgtgctttatcca
gtatttatccattgcttcatggatcttgtgtcaaaagggcatcttcaggaagcttggaac
tttttcaatacctttcgtgaagaccatgaaatgatgcactcacgggaccttcagaaattg
gaactagttctttctcctgctcatttggtggaaatggaattcgctcattcccttaggcag
agtaagttcaacataaagatatgtcggtattcttatgagcttctactgcaacatctacat
agtatgcaatcaagcacaataattggtattatcaatgagcatgttggcttccaagttaca
gctggacaaccgagctcaatttctgatgatccagaagctgttaccctcagtggaagcatc
caggatgcagcaaacaagataaatcagaaagaaatactctgggggatgtttgaagattct
gtagaagaccacatagataagtctggggccttgctttcaggcacagaaaagggtgaaggt
gagggcaaagagggagacaatgatgagagtaagaaaaggtcaattgatgtaggaaagcaa
ggtaactctgtaaaaaaggtaaaaaaggagaaggtcagcagtgcaacagggaaaaatgct
aaaccagaagctaacactatatctgcagcacctcgcattaaaccagagctacccttgccc
acagtttcaactgatgtagaactgtccatcctagaagatttaaggaatcgtgtacaattg
agtagtgttgctctcccttcagttaacttctacacatttgtaaatacacataatggttta
agctgttcatcaatatcccacaatggatcattgcttgttggaggattttctgactcgtca
ctaaaggtctgggatatggcaaaacttgagcaacaatccaccacttatttttcgcacgga
gggaatgacacatcacaaaatgaacacattattgggcaaaatagtgggagaagacagtac
acattgtttcaaggtcattcaggtccagtctatgcagccacttttagtgaagccggggat
tttcttctttcctcttcagccgacaaaacaattcgactatggagtacaaagcttaatgcc
aatcttgtttgttacaagggtcacaattaccctatctgggatgttcagtttagtccagca
gggcattattttgccagctgttcacatgacagaactgccaggatttggtctatggacaga
ataaaacctctaagaataatggcaggacatttgtcagatgttgattgtgtgcagtggcat
cccaactgcaactacattgctactggctccagtgacaaaacagttcgactgtgggatgtg
cagagcggggaatgtgttcgggttttcattggtcatagaagtatgattttgtctttggca
atgtcccctgatgggcgctatatggcatctggtgatgaagatggcacaatcatgacgtgg
gacctctctagtggctgttgtgtcacacctctagtcagtcacacctcatgtgtctggtca
ctcgctttcagttgtgaaggttctcttctagcatctggatctgctgactgcactgtcaaa
ttgtgggatgttactacaggtataaaggttccaaggaatgaagaaaaaagtgggaatact
aacagactcagatcattaaaaagcctgccaaccaaatctgcttcagtttactctctccag
ttttctcgcaggaatcttctttttgcagctggagctcttgcaaaaagtggtttttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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