KEGG   Phaseolus vulgaris (common bean): PHAVU_008G068400g
Entry
PHAVU_008G068400g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03018  RNA degradation
pvu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHAVU_008G068400g
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_008G068400g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_008G068400g
   03041 Spliceosome [BR:pvu03041]
    PHAVU_008G068400g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHAVU_008G068400g
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PHAVU_008G068400g
Spliceosome [BR:pvu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PHAVU_008G068400g
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 18622077
NCBI-ProteinID: XP_007139904
UniProt: V7B4V3
Position
8:6166927..6168847
AA seq 91 aa
MSGTEKGGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA
NT seq 276 nt   +upstreamnt  +downstreamnt
atgagtggaactgagaaaggaggatcaggaaccacaaaaacccctgctgatttcctcaaa
tccattcgtggaaggccggttgtcgtcaagctcaattccggtgttgattaccgaggtata
cttgcctgtctagatggttatatgaatattgcaatggagcagacggaggaatatgtcaat
ggacaactgaagaacaagtatggtgacgctttcatccgaggaaataatgttctatacatc
agtacctcaaagaggactctagcagagggggcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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