KEGG   Plasmodium vivax: PVX_095320
Entry
PVX_095320        CDS       T01073                                 
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit, putative
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
pvx  Plasmodium vivax
Pathway
pvx03020  RNA polymerase
pvx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PVX_095320
  09124 Replication and repair
   03420 Nucleotide excision repair
    PVX_095320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvx03021]
    PVX_095320
   03400 DNA repair and recombination proteins [BR:pvx03400]
    PVX_095320
Enzymes [BR:pvx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PVX_095320
Transcription machinery [BR:pvx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     PVX_095320
DNA repair and recombination proteins [BR:pvx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PVX_095320
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 5473819
NCBI-ProteinID: XP_001614530
UniProt: A5K7P4
Position
8:complement(1000860..1007999)
AA seq 2379 aa
MTVDLNVPYSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLYKDGLPREGGLNDIRMG
TIDYKTLCGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTSN
SKVKFIEKIKVNSLRLKRLSEVCQGIKVCDHSSPQEEDTLHLNDNSVDNFYNNDLSNLNV
NQQMLLNPNSYGNIFEIVNKEDVDCGCVQPKYSREGPNMFIQFLHSSEEDIDESKRKLSA
EEALDILKKIRKEEMPILGFNSDRCIPASLILTFIPIPPPCARPYVQYGNQRSEDDLTLK
LLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLFDNDIPGMPIATTRSKKPIKAI
RTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNY
DDLKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFN
RQPSLHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLM
IVQKQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIWIPYWNHVIPTPAI
MKPKALWTGKQIFSMLLQFEDLERLNDPLGNAKMGATNASGFRVEDEMGRGNSGGSGAHL
HPHSPLAIGDTLSGNVKNQATINEATRTNSTDGAFKGGISGWGRNVKINLMRDSSTSCKD
DNPYCSVNDGKVIIKNNELLCGIICKRTVGSSSGSLIHILWHEMGPDKTKDFISALQKVT
NNWLEYIGFTVSCSDIIASNKVLDKVKDILSKSKKEVSKIVKKAQRGELECQPGKSLYES
FETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGK
RIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSE
TGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDNKEV
KKLYKYNFDDDEDDDREDSYGKDYYLKGGQHRKGSYMEYSKQNVLNQEFEELLKCKNNIC
KEIFPDGDVRQHLPINMNRLIEFAKSQFPFVPVLGGKVKDPIGASGMGPKRGKLKKREEK
KGKNKKKKEKKATPSHDQAKAASAASNADAALGDPTDELRNSEFVSEIKKEYEANELAGA
MKGQGAYSGFEPFDEDLAEGSAEEGGDEGSGEEDSDGNESGEESGDEGSGDDRSLVNPVD
IVHKVNRFLEKLVIIKQINSNDTLSLEAQNNATVLLKAHLRTYLNSKLLTQTHKISMKGI
DWLLQEIEKNFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLK
ELINIVKNVKTPSTTIYLDDVVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNTTSTI
LEEDKLWVDEFYEFPDEDDTQYTLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSVFSSDE
LDIIYTDDNSEDLILRIRVKYLNGEYNFLNDDPDQAQEDEYEEEEEEEEEEENYNIGNTF
KAKKNVEADGNQTTQSKKNDKDDNQSVSSNRSRNNSVNSENRFGSANGSASGTESEDDDG
AGNPHRDEAAVKDKTGKGKSATKMKKLKEESANRADSNYVEGYEEADLFVKGEGRSGESA
VGSGVGSGAANGAANVAPNGTTEDMFGKANLNGEEDALAAKGRSSLSGANAGGGTTGGNA
PSGNNANSLDMNSMRNITNLSNPVYMKEDTEDTFLKKLMEQCLSTLKLRGIENITKVYMR
EESKITYDSTNGKFVRSSHWVLDTDGCNLEHIFCASHVDYKKTVSNDIVEIFEVLGIEAV
RRALLKELRTVISFDSSYVNYRHLSILCDVMTQRGYLMSITRHGINRVDRGPLVKCSFEE
TVEILLEAAAFAQVDNLKGITENIMLGQLCKIGTGVFDIIIDNQKLSDANQNLETLMDIT
SAGFTTPDSHHGITPDGLQSPVAINTLNSPLPFSPTYNVNLLSPTAPLDSVNGILSPQCL
QNYGDGSGGGESIMSPSKNDFNNLDTLKLGGKFSPTQSPKSPTSVIHSPFSPFDNHNQQA
LDPSMLFSPKNNNVGSSSNSMSMMNYNVFSPKANLNSIQSPAMLYSPNRALDLFSPKQQT
QNNIYSPSYSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVV
SPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVP
NNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLSPAYILQSPVQVKQ
HIQDVSVFSPIQQANAEEVQNDDPFSPMPYNMEEDEMEQ
NT seq 7140 nt   +upstreamnt  +downstreamnt
atgacggtggacctgaacgtgccctactcggcgtgcgagctgaagagggtgaagcgcctg
gagctgggcgtgctggacccagaaattataaaaaaaataggcgtgtgcgaaattgtgaac
gtggatctgtacaaagatggcttgccaagggagggaggcctaaacgacatccgcatgggg
accatagactacaaaactttgtgcgggacgtgcaacatgaacgtgaaatattgcccaggc
cactttggctacattgagctagccaaaccgatgtaccactacgggttcatgaacgtagtg
ctgaatgtgctaaggtgcgtgtgctaccactgtgggaggctactgtgcaatacgagcaac
tccaaggtgaagttcatagagaaaataaaggtgaacagtttgaggctgaagagactgtcg
gaggtgtgccaagggatcaaagtgtgcgaccactcctctccacaggaggaggacacgtta
cacctgaatgataactcggtggacaatttttataataacgatttgagcaacttaaatgta
aatcagcaaatgcttttaaaccccaacagctacggtaacatcttcgagattgttaataag
gaagacgtggactgtgggtgtgtacagcccaagtactccagggaaggaccaaacatgttc
attcagtttttgcactctagtgaagaagacatagatgagagtaagaggaaattaagtgca
gaagaagcattagatattttgaagaaaattagaaaagaagaaatgccaattttaggattc
aattcagataggtgtatccccgcatccttaattttgacattcatcccgattcctcccccg
tgtgcgaggccttacgtacagtatggcaaccagaggagtgaagacgacctgactttgaag
ctgctagacattgttaaaacgaacatacagctgaagaggcaaacggataggggggccaaa
tcgcatgttctgcaggatctttgtgccctcctacaatttcatattaccaccctatttgat
aatgatatcccggggatgcccattgcgactacccgttcgaagaagccaattaaagccata
cggaccaggctgaaggggaaggaaggaaggctcagaggaaatctaatgggaaagcgtgtg
gacttctctgccagaacagtcattacaggagatccaaatttgaacatagactacatagga
gtgcccaaatcagtcgccatgacgttgacgttctgcgaaacggtgactccactcaattac
gatgatttgaagaagctcgtggaaagagggccctacgaatggccaggagccaagtatatc
attagggataacggaaccaagtatgaccttaggcatgtaaggaagaactcagagagggaa
ctagaatatggctacaaagtggagaggcacatgacagacgaggattacatcctcttcaat
cggcagccttcgcttcacaaaatgagtatcatggggcataaggcaaagatactgccctac
tccacgttcaggcttaacttagctgttacttccccgtacaatgccgatttcgatggagac
gaaatgaatctgcaccttgcgcagtctcatgagactaggtccgaaattaagcacctcatg
attgtgcagaagcagatcgtctctcctcaggggaacaagcccgttatgggaattgtacag
gactccctcttggccataaggaaattcacaaggagggataacttcctcacaaaggaagaa
gtcatgtctttgctcatctggattccctactggaatcacgtgatacccactcctgctatt
atgaagccgaaggccctgtggacgggaaagcagatcttctctatgctcctccagtttgaa
gatttggaaagactcaacgatccgctgggcaacgccaagatgggggctaccaacgcgagc
gggttcagagtggaagacgaaatgggtcgagggaacagcggtggtagtggcgcacacctc
cacccacatagccccctagccattggagacacgctaagcggtaatgtgaaaaatcaagct
actataaacgaagcgacacgcacgaacagtacagatggtgcattcaaggggggtattagc
ggctgggggaggaatgtaaaaatcaacctgatgagggactcctccacctcgtgtaaggac
gacaatccgtattgctccgtcaacgatgggaaggtgattataaagaataacgagctcttg
tgtggaattatttgcaaacgcacggtgggttcttccagcggatcgctgattcacattttg
tggcatgaaatggggccagataagaccaaagatttcatttccgccctgcagaaggtcacc
aacaactggttagagtacatcgggttcaccgtcagctgctcggacatcatagctagtaac
aaggtcctcgataaggtgaaagatattcttagtaagtccaaaaaggaggtgtccaaaatt
gtgaagaaggcgcaaagaggggagttggaatgccagccgggcaagtccctctacgaatct
ttcgaaacgagggtaaacaacgagctgaactgtgcccgagaaatggcaggaaaggtggcc
tcagaaagtttagacgaaaggaataacatcttcagcatggtggcgagtggctccaaagga
tccatcatcaacatctcgcaaatcatatcctgtgtgggccagcaaaatgtggaggggaag
cgaattcccttcggatttaaccacaggtcgctgccccattttataaaatttgattacggt
ccagaaagcagaggctttgtctccaattcgtatttaagtggactcaccccacaggaagtt
ttctttcatgccatgggaggaagagaaggtatcatagacacggcgtgcaagacgtccgaa
acgggttacattcaaaggaggctaatcaaagccatggaggacgtcatggtgcagtacgat
cgaactgttaggaattcctatggggatattattcagttcctctatggggaggatggaatg
gctggagagtatatagaagaccaaataattgatttgatgaagctggacaataaggaggtg
aaaaaattgtataaatataactttgacgatgatgaggatgacgatcgtgaagacagctac
gggaaggactactacctgaaggggggccaacacaggaaaggctcctacatggagtacagc
aagcagaatgtgctgaatcaggaattcgaggagctcctaaaatgtaagaataacatctgc
aaggagatattccccgacggggatgtaaggcagcacctgcccatcaacatgaaccggctc
atcgagtttgccaagtcgcagttccccttcgtgcccgttctggggggcaaggtgaaggac
cccattggtgcgagtggtatggggccgaagaggggcaaactgaagaagagggaggagaag
aaggggaagaataagaagaagaaggagaagaaggcgaccccttcccacgatcaggcgaag
gcggccagcgccgcgtccaacgccgacgcggcgctgggagaccccaccgacgagctgcgc
aacagcgaattcgtgtcggagatcaagaaggagtacgaggcgaacgaactcgccggcgcc
atgaaggggcagggcgcgtacagcggcttcgagcccttcgacgaggacctcgcggagggg
agcgctgaagaaggcggtgacgagggaagcggtgaagaggatagcgatggcaacgaaagt
ggcgaggaaagcggtgacgagggaagtggcgacgaccgctccctcgtcaaccccgtggac
atcgtgcacaaagtcaaccgcttcctagaaaaactagtcatcatcaaacaaatcaacagc
aacgacacgctctcgctggaggcccagaacaacgccacggtgctgctgaaggcccaccta
agaacctacctgaattcgaagctcctgacgcagacccacaagatcagcatgaagggcatc
gactggcttctgcaagaaattgagaagaatttctacaagtcgctgtgccaccccggagag
tgcgtgggcgccttggcagcccagtcgataggagagcccgccacgcagatgacgctcaat
accttccacttcgccggagtggggtccaaaaacgtaacgttaggggtgcccagattgaag
gagttaattaacattgtaaagaatgtgaagaccccctccacgacgatctacctagacgat
gtcgtgtccaatgatcagcagaaagccaaggatattttaaccaaactggaatacacaact
ctgaagcaactaacatcacacgctcaaattatttacgaccctaacacgacgagtaccatt
ttggaagaggacaaactgtgggtcgacgagttctacgaatttccagatgaagatgacaca
cagtatacactaggagaatgggttctacggattcagctaaccaatattcacgtgaatgag
aaaaagctaaccatgaaggaaatcgtctacatcatttactccgtcttttccagtgacgag
ctggacatcatctacacggatgataactcggaagaccttatcctaagaattagggttaaa
tacctaaatggggaatacaactttctcaatgacgacccggaccaggcgcaggaggatgaa
tatgaagaggaagaagaggaagaggaggaggaagaaaactacaacattgggaacaccttc
aaggcgaagaagaacgtcgaggcggatggcaaccagaccacacagagcaagaaaaatgat
aaggacgataaccaaagcgttagtagcaaccgctccaggaataacagcgtgaatagtgag
aaccgatttggaagtgccaacgggagtgcgagcggtacggagagtgaagacgacgatggg
gcggggaatccccatcgggatgaagcagcggtgaaggataaaacgggcaaggggaagagt
gccactaaaatgaagaaactcaaggaggaaagtgccaaccgggcggatagcaactacgtt
gaggggtacgaagaagcggacttgttcgtcaaaggggagggcagaagtggagagagcgcc
gtcgggagtggagttggaagtggtgccgcaaatggcgccgcgaatgtcgccccaaatggc
accacggaggacatgttcgggaaggccaacttaaacggagaggaagatgccctcgccgcg
aagggcagaagcagcctcagcggcgccaacgcgggtggaggcaccacgggtggaaatgcc
cccagtggaaataatgcaaacagtctagatatgaacagcatgaggaatataaccaatttg
agcaaccccgtttacatgaaggaagacacagaagatacctttttgaagaagctgatggag
cagtgcctatcgacgttaaagttgaggggaatagaaaacattaccaaagtgtacatgcga
gaagagtccaaaattacttacgactcgaccaatgggaaatttgtgaggagttcccactgg
gtcttagacacagatggctgcaatttggagcacatcttctgtgcttcccacgtggattat
aagaaaaccgtttcaaatgatatagtagaaatatttgaagtgttaggaatagaggcggtg
aggagagctctcctaaaagaattgagaacagtcatttcgtttgatagctcctatgtgaat
tacagacatttgtctatcctctgcgatgtgatgactcagaggggttacctaatgtccatc
acgagacatggcatcaatagggtagatagaggtcctctagtcaagtgcagctttgaagag
acggtggaaatactcctagaagcagctgcctttgcacaggtagataacctcaaaggaata
acagagaatatcatgctgggccagttgtgcaaaataggcaccggcgtcttcgacatcatt
atagacaatcagaagctgagtgatgccaatcaaaatttagaaactctgatggatattacc
agcgctgggtttaccaccccagatagtcaccatggaatcactccagatgggttacaatca
ccggtagcaattaacacgctaaactctccgcttcccttctccccaacgtataatgtaaat
ttgctatcgcctacggctcctctagacagcgtcaacggtattttatcccctcaatgtctg
cagaactatggggatggaagtggtggaggtgaaagtatcatgtctccttccaaaaacgac
tttaacaatttggacacgctaaaattggggggcaaattctctcctacgcaatctcccaaa
tcacccacgtcggttatccactcccccttctctccctttgataatcacaaccagcaagca
ctcgatcccagcatgctcttctctccaaagaataacaacgtcggcagcagtagtaacagc
atgtctatgatgaattacaatgtgttttcccccaaggcaaatttgaatagcatacagtcg
cctgccatgctgtactctcctaatcgcgctttagacttattttcccccaagcagcagacg
cagaacaatatttactccccttcctactcgcccacctctcccacgtaccacctgaccaac
cctgccagtggtggaggctcctccggcttgaacggcacgaaggcgtattactccccgacg
tctccaacgaatcagctggacgaggtgaaccccaatatgatgaaataccacagcgtcgtt
tcgcccgtctactcggttacctccccgaagtactcgcccacctcgcccaagtattcgccc
acctcgcccaagtattcgcccacctcgcccaagtactcgccaacctctcccaagtactcg
cccacttcccctaagtactcgcccacgtcgccgcagtactccccctcgtcgcccgttccg
aacaaccccagcagcccccactactccccctacgccatagcgtctcccaaattctcgccc
acctcccccgcgtactccatctcctcccctgtgtacgaccaaagcggcaacgccaggagc
aagagccagcaccccctctccccggcctacatcctgcagtcccccgtgcaggtcaagcag
cacatccaggacgtcagcgtcttctcgcccatccagcaggccaatgcggaggaggtgcag
aacgatgaccccttctccccgatgccctacaacatggaggaggacgaaatggagcagtga

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