KEGG   Pectobacterium wasabiae: A7983_03105
Entry
A7983_03105       CDS       T04535                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pws  Pectobacterium wasabiae
Pathway
pws03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pws00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A7983_03105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pws03019]
    A7983_03105
   03016 Transfer RNA biogenesis [BR:pws03016]
    A7983_03105
Enzymes [BR:pws01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A7983_03105
Messenger RNA biogenesis [BR:pws03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A7983_03105
Transfer RNA biogenesis [BR:pws03016]
 Prokaryotic type
  tRNA degradation factors
   A7983_03105
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 Rho_RNA_bind OB_Dis3
Other DBs
NCBI-ProteinID: AOR62272
UniProt: A0A1D7YXA8
Position
complement(682363..684819)
AA seq 818 aa
MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPIGREELAADLQLTGEEALEALRRRLR
AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRAIH
GDVVLAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK
EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK
VEEQVKDLSEDVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEQKRGGGWRLWVAIA
DVSYYVRPNTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLSSYKFYEAVMSSHARLTYTKVWNILQGDAELREHYKPLVGGLEELHHMYKALEHA
REVRGGIAFETEEAKFIFNAERRIDRVEAVVRNDAHKLIEECMILANISAARFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNEVAERPDREMLQTMLL
RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRHERWTSTGGWH
SDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFFVRL
KDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSTRKVRGEGKTARDRTKKPESREAKPSRRRRSPSKAAANFEPDAAFRKEGDRSATAD
KPKVKPKKNRDKAKKNAEKTRKIAAATKAKRAKKKSAE
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgtcacaagatccattcttggaacgagaagcagaaaaatacgaatcccctatccctagc
cgtgaatatattttggcgcacatcgccaagcgcgataccccgatcggtcgggaagaattg
gccgccgacctgcaattaaccggagaagaagccctcgaagcgctgcgccgccgtttgcgt
gccatggagcgcgatggtcagcttatttttacccgccgccaatgctatgcgttgccggaa
aagctcgatctcttgcgtggtacggtgatcggccaccgcgatggcttcggcttcctgcgt
gtggaaggccgcaaagacgatctttatctgtcggctgaagagatgaaacgggcgattcac
ggcgatgttgtgctggcgcagccgctgggtgcggatcgtaaaggacgccgcgaagggcgt
attgtacgtgtgctagagccgcgtaccggacaaattgtcggccgctattttgtcgatgcc
ggtgtcgggttcgtcgtaccggatgatagccggctgagcttcgatattctgatcccgaaa
gaagaaattaacggcgctcgcatgggcttcgtggttgtagttgagctgacgcaacgcgca
acgcgccgcacgaaagcggtcggtaagatcgttgagatcctcggtgacaacatgggcacc
gggctggcggtggatattgccctgcgtacccatgatattccgcacacctggccgcctaaa
gtcgaggagcaggtgaaggatctttccgaagacgtgccggaagcggcgaagaaaggtcgt
gtggatctgcgtaagctgccgctggtcacgattgacggcgaagatgcccgcgattttgat
gacgccgtatactgtgaacagaaacgtggcggcggctggcgtttgtgggtcgcaattgcg
gacgtgagctattacgtgcggccgaatacggcgcttgaccatgaagcgcgggcgcgtggt
acatcggtgtacttcccgtcgcaggtcgtgccgatgctgccggaagtgctgtcgaacggg
ctgtgttcgcttaacccacaggttgatcgcctgtgtatggtctgtgaaatgactgtctcg
gcgcagggcaagctgtcgtcctacaaattctatgaagcggtgatgagttcacacgcgcgt
ctgacctacaccaaagtgtggaacattctgcaaggcgatgccgagctgcgtgagcactac
aaacctttggttggtgggctggaagagctacaccacatgtataaagcgttggaacacgcg
cgtgaagtacgtggtggcatcgcgtttgagaccgaagaagcgaagtttattttcaacgcc
gaacgccgtatcgaccgtgtggaagccgtagtgcgtaatgacgcacacaagctaatcgaa
gaatgcatgattctggcgaatatctccgccgcaagatttgtggagaaaaacgaagagcct
gcgttgttccgcgtacacgatcagccgagcgaagaccatgtattagccctgcgtagcgtg
ctgggcgaactggggctgacgctgaaaggcggaatgaagccacagccgaaagactacgcg
gaattgatgaacgaagtggcggagcgtcccgatcgggaaatgctgcaaaccatgctgctg
cgttcaatgaaacaggcgatttatgatccggaaaaccgcggtcacttcgggctggccttg
acgtcttacggccacttcacgtcgccaattcgtcgttatcctgatctgtcgttgcaccgt
gcgattaagtatctgttgagcgatcgtcatgagcgttggacgtcaacgggcggttggcat
agcgatattaatgagatgctacagttgggcatgcactgctcgatgacagagcgccgtgcg
gatgaagccactcgcgacgttgcggactggctgaaatgcgactttatgcaggatcatgtg
ggtgaagtctttacggggattatcgccagtgtgaccggttttggcttctttgtgcgcctg
aaagatctgtttatcgatgggctggtacacgtttctacgctggataatgactactaccgt
tacgataatatcggtcagcgactgatcggtgaatcgcgcgggcaggtttatcgtctgggt
gatgaagtagaaatccgcgttgaagctgtgcatatggacgaacgcaacattgatttcgcc
ttggtttccagtactcgcaaggtgcgcggcgaaggtaaaaccgcacgtgaccggacgaag
aaaccagagtcgcgtgaggcgaagccaagtcgacgtcgtcgtagcccaagcaaagccgcc
gcaaactttgaaccggatgctgcattccgcaaagaaggcgatcgcagcgcgacggcggat
aaacccaaagtgaagccgaagaagaaccgcgataaagcgaaaaagaacgcagaaaaaacg
cgtaaaattgccgccgcgaccaaggctaaacgcgcgaagaaaaagtctgcggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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