KEGG   Pyrus x bretschneideri (Chinese white pear): 103946403
Entry
103946403         CDS       T03446                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103946403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pxb03019]
    103946403
   03041 Spliceosome [BR:pxb03041]
    103946403
   03009 Ribosome biogenesis [BR:pxb03009]
    103946403
   03016 Transfer RNA biogenesis [BR:pxb03016]
    103946403
Messenger RNA biogenesis [BR:pxb03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     103946403
Spliceosome [BR:pxb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    103946403
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    103946403
Ribosome biogenesis [BR:pxb03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103946403
Transfer RNA biogenesis [BR:pxb03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    103946403
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C ATPase_2 nSTAND3 Zot AAA_27
Other DBs
NCBI-GeneID: 103946403
NCBI-ProteinID: XP_009355377
Position
Unknown
AA seq 1000 aa
METEAASLKRKSEGEAELEEAPQKQQKRDNGWASVDDEAVACLHDVSYPEGYVVPPPSSS
SSAAAEASEPAKKFPFPLDPFQSEAINCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNK
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEI
TREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQ
PCHIVYTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALSALAPAADSAKKKEN
GKWQKGLIMGRAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKMDLNGDNE
KENVETIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLI
KCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICI
LMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADR
AIPSLEKQAKDLEKERDSIIIEEEDSVKNYYNLLQQYKSLKQELHDIVLSPKYCLPFLKP
GRLVSIQCAKSDESSPSFSIEDPVTWGVILNFQRVKTASEDDASRKPEDSNYTVDVLTRC
RVSTDEVAKKTIKIIPLKEAGEPAVVSISISQINSMSGLCMVIPKDLLPLPARENTLKRV
LETLSRFDKGKIPLLDPEEDMKIESSSYKKVSRRIEALENLFDRHEVARTPLIEQKLKVF
HMKQDLAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTNDGVVELKGKVACEISS
AEELTLTELMFNGAFKDINVEEMVSLLSCFVWQEKLKEATKPREELDLLFSQLQDTARRV
AEVQLECKVEIDVDSFVSAFRPDIMEAVYAWAKGSKFYEIMSATPVFEGSLIRAIRRLEE
VLQQLIQAAKSIGETELESKFEEAVLKIKRDIVFAASLYL
NT seq 3003 nt   +upstreamnt  +downstreamnt
atggaaacggaagcggcatccctgaagaggaagtcggagggagaggccgagttggaagaa
gctccacagaaacaacaaaagagggacaacggttgggcaagcgtcgacgacgaagcggtg
gcctgcttgcacgacgtgtcgtatcctgagggctatgtcgttcctcccccttcttcttct
tcttcagctgcagcagaagcttctgagcctgccaagaaattccccttccctctcgaccct
tttcagtctgaggccataaactgcctcgaaaaagccgagtccgtcatggtgtctgctcat
acgtcggctgggaaaactgtggtggcatcgtatgcgattgcaatgtctctaagaaacaag
cagcgagtgatatacacttcaccaatcaaagcactgagcaaccaaaagtatagggagttc
aaagaggagttttccgacgttggcttgatgactggcgatgtaactatcgaccccaatgct
tcctgcttggttatgaccacagaaatctggcgtagcatgcagtacaaagggtcagagata
acgcgtgaggtggcgtggattatctttgatgaggtgcactatatgcgtgatagggagaga
ggtgtggtgtgggaagagagcattgttatggctccaaagaatgctcggtttgtgttcctc
tcagcaactgtgccaaatgctaaggaatttgctgattggcttgcaaagattcaccgtcag
ccttgtcacattgtctatactgattataggccaactcctctgcagcattatatttttcct
tctggagggaatggattgtacttggtagtagatgaaaaagggaaatttcgcgaagacagc
tttcagaaagctcttagtgctcttgctcccgctgccgatagtgctaagaagaaggaaaat
ggcaagtggcaaaagggtttgatcatgggcagggctgctgaggaaagtgatatcttcaag
atggtcaaaatgataattcagcgtcagtatgatcctgtaatactttttagctttagcaaa
agggagtgcgaatctcttgcaatgcagatggcaaaaatggatctaaatggggacaatgag
aaagaaaatgtagaaaccatcttctggagtgctatggatatgctttctgatgatgataaa
aagttacctcaggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcat
tctggcttgcttccaattctaaaggaagtgattgagatattatttcaggaaggcctaatc
aagtgtttatttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgtt
gtgtttaccaatgtccggaaatttgatggtgataagttcagatggctatccagtggagag
tatatacaaatgagtggccgtgctggtcgccgtggtattgataagcgtggaatatgtata
cttatggtagatgagaagctggaaccatctactgctaaaatgatgcttaaaggaagtgct
gattgtttgaacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagc
gaagatggtaatccagaaaatttgcttcgtaactcgttctatcaatttcaagctgatcgt
gccatccccagtcttgagaagcaagcaaaggatcttgagaaagagagggattcaattata
attgaagaagaagatagtgtaaagaattattacaatctgttacagcaatacaagagtttg
aaacaggaacttcatgatattgtgctttctccaaagtactgcttaccatttctgaaacct
ggtaggcttgtctcaatccaatgtgctaaaagtgatgaaagttccccttctttttccatt
gaggacccggtcacatggggagtgatactaaattttcaacgggtgaaaactgcttcagaa
gatgatgcaagtagaaaacccgaagattcaaactacacagtggatgttctgacaaggtgc
agggtaagtacagatgaagttgccaagaaaaccatcaaaattatccctctcaaagaggca
ggagaacctgctgttgtctccatttccatatctcagataaatagtatgagtggactttgt
atggtcattcctaaggatcttttgccactaccagctcgagaaaacacactgaagagagtt
cttgaaactctgtcaagatttgataaaggaaagattcctcttctcgatccagaagaagat
atgaagattgaaagtagttcatacaaaaaggtgtctcgtaggatcgaggctttagagaac
ctgtttgacaggcatgaagttgctagaactccacttattgagcaaaagcttaaggttttt
catatgaagcaggatttggctgccaagatcaagtcaatcaagaaaacaatgcgctcttcc
actgcattagcttttaaagatgaactgaaggcaagaaaacgggtccttcggaggctagga
tatgttacaaatgatggtgttgtggagttgaagggtaaagttgcttgtgaaatcagcagt
gcagaagagttgaccctgactgagctcatgttcaatggggctttcaaggacataaacgtg
gaagagatggtttctcttctctcatgttttgtatggcaggagaagcttaaggaagctaca
aaaccaagggaagagcttgacctgctattttcacaattacaagatacagctcggagggtt
gctgaggttcagcttgagtgcaaggtcgaaattgatgttgacagctttgtgagtgctttt
cggcctgatattatggaggctgtgtatgcttgggcaaaagggtccaaattctacgagatc
atgtcagctacacctgtttttgagggcagcttgatcagggcaattaggagattagaggaa
gtccttcagcaactgattcaagcagccaagtctattggagaaaccgagcttgagtcaaaa
tttgaggaggccgttttgaagatcaaaagggacattgtctttgcagcttccctatacttg
taa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system