KEGG T00750: PHZ

Phenylobacterium zucineum: PHZ_c2709

Entry

PHZ_c2709 CDS T00750

Gene name

ligC

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pzu Phenylobacterium zucineum

Pathway

pzu03410	Base excision repair
pzu03420	Nucleotide excision repair
pzu03430	Mismatch repair
pzu03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pzu03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pzu03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pzu03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:pzu03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

197106170

NCBI-GeneID:

6792231

UniProt:

B4RHS7

Position

complement(3104851..3105900)

AA seq 349 aa
MPGLSDLPVPLDLPPMEAKLVDEVPRESGWRFEPKWDGFRCLAFRAGDEVALRAKSGKPL
DRFFPDVVAALRALPVERFVVDGELTIEVEGRLSFEALQLRLHPAESRVRKLAAAQPAAL
TLFDCLMDAKGRSLVEAPLSKRREALEAFVARLGGAPAVRLSPFTEDRARACRWLDEAGF
VLDGVVAKRADGPYVPGERAMLKIKKIRTADCVVGGFRHAKGTEAVGSLLLGLYGDDGLL
HHVGFTSTISNAERPELTRRLEALAGGSGFTGNAPGGPSRWSTERTGEWTPLRPELVVEV
RYDQVTGERFRHGTKLVRWRPDKAPRQCTFEQIRPPARAGGVPSATASR

NT seq 1050 nt +upstreamnt +downstreamnt
gtgcccggcctttcggatcttcctgtccccctcgacctgccgcccatggaggcgaagctg
gtggacgaggtcccgcgcgagtccggctggcggttcgagcccaagtgggacggcttccgg
tgcctggcgttccgggcgggcgacgaggtggcgctgcgggccaagtcgggcaagccgctg
gaccgcttcttccccgacgtggtcgcggcgctgcgggcgcttcccgtcgagcggttcgtg
gtggacggcgagctgaccatcgaggtggaggggcggctttcgttcgaggccctgcagctg
cgcctgcacccggccgagagccgcgtgcgcaagctggcggccgcgcagccggcggcgctg
accctgttcgactgcctgatggacgcgaaaggccgctcgctggtggaggcgccgctgtcc
aagcggcgcgaggcgctggaggccttcgtcgcccggctcggcggcgcgccggcggtgcgg
ctctcgcctttcaccgaggaccgggcccgggcctgccgctggctggacgaggccgggttc
gtcctggacggcgtggtggccaagcgcgcggacggaccctacgtccccggcgagcgggcc
atgctgaagatcaagaagatccgcaccgccgactgcgtggtgggcggcttccgccacgcc
aaggggaccgaggcggtgggatccctgctgctgggcctctacggcgacgacggcctgctg
caccacgtgggcttcacctcgaccatctccaacgccgagcggcccgagctgacccgccgc
ctggaggccctggccggcggctccggcttcacggggaacgcccccggcgggcccagccga
tggagcaccgagcggaccggcgagtggacgccgctgcgtcccgagctggtggtggaggtc
cgctacgaccaggtgaccggcgagcgcttccggcacgggacgaagctggtgcgctggcgg
cccgacaaggcgccccggcaatgcaccttcgagcagatcaggccgccggctcgggcgggc
ggcgttccgtccgccacagcgagtagatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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