KEGG   Rothia aeria: RA11412_2539
Entry
RA11412_2539      CDS       T05268                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
raj  Rothia aeria
Pathway
raj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:raj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RA11412_2539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:raj03021]
    RA11412_2539
   03400 DNA repair and recombination proteins [BR:raj03400]
    RA11412_2539
Enzymes [BR:raj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RA11412_2539
Transcription machinery [BR:raj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RA11412_2539
DNA repair and recombination proteins [BR:raj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RA11412_2539
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5
Other DBs
NCBI-ProteinID: BAV88838
UniProt: A0A2Z5R286
Position
complement(2360028..2361020)
AA seq 330 aa
MLIAQRPTLTEEVVAPNRSRFTIEPLEPGFGYTMGNSLRRTLLSSIPGAAVTSVRIDGVL
HEFSTIAGVTEDVTEIILNIKKLSISSENDEPVVAYLRLQGEGELTAGDIEVPAGVEIHN
PDLHIATLNDKANFNAELTIERGRGYVSAAQNKIGDAEIGRIPVDSIYSPVLKVTFNVNA
TRVEQRTDFDSLTLDVETKEAIAPRDAVASAGSTLVELFGLARELNVAAEGIEVGPSPVD
ESIAADMALPIEDLNMSVRSYNCLKREGIHTVGELVTRSEADLMDIRNFGAKSIDEVKAK
LHELGLALKDSPPGFEPVVRAFDDEDGSGE
NT seq 993 nt   +upstreamnt  +downstreamnt
gtgcttattgcacagcgccccactctgactgaagaggtcgtagcgccgaaccgctcgcgc
ttcaccattgagccccttgagccgggcttcggttacaccatgggcaactcgctccgtcgt
accctgctgtcctccattcccggtgctgccgtgaccagcgtccgtatcgacggtgtgctt
cacgagttcagcaccattgcaggtgtgaccgaggatgtgaccgagattatcttgaacatc
aagaaactctccatttcctctgagaacgacgagcccgtggtcgcctacctgcggctgcag
ggcgagggtgagctcaccgcaggcgatattgaggtgcccgccggtgtggaaatccacaac
ccggatctgcacatcgctaccctgaacgataaggcgaactttaacgctgagctgactatc
gagcgtggccgcggctacgtgtctgctgctcagaataaaattggtgacgcagagattggc
cgtatcccggttgactctatctactcaccggttctgaaagtcaccttcaatgtgaatgcg
acccgtgtggagcagcgcaccgacttcgacagcctgaccctggatgttgaaactaaggaa
gctatcgcaccgcgcgatgccgtcgcatccgctggtagcaccctagtcgagctcttcggg
ctagcacgtgaactcaacgttgctgccgagggtattgaggttggtccgtccccggtggac
gagtccatcgccgctgatatggcgctgccgattgaggacctgaacatgtccgtccgctcg
tacaactgcctcaaacgtgagggcatccacactgtgggtgagctggtgacccgtagcgag
gccgacctcatggatatccgtaacttcggtgccaagtccattgatgaggtcaaggcaaag
cttcacgagctcggcctagccctgaaggattcccctcccgggtttgagcccgtagtccgc
gcgttcgacgacgaagacggttccggcgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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