KEGG   Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_0462
Entry
Rahaq2_0462       CDS       T01770                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
raq  Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:raq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Rahaq2_0462
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:raq03019]
    Rahaq2_0462
   03016 Transfer RNA biogenesis [BR:raq03016]
    Rahaq2_0462
Enzymes [BR:raq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Rahaq2_0462
Messenger RNA biogenesis [BR:raq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Rahaq2_0462
Transfer RNA biogenesis [BR:raq03016]
 Prokaryotic type
  tRNA degradation factors
   Rahaq2_0462
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 Rho_RNA_bind TFIIE_beta RNase_II_C_S1 LexA_DNA_bind OB_Dis3
Other DBs
NCBI-ProteinID: AEX50396
UniProt: H2IS65
Position
471356..473854
AA seq 832 aa
MSQDPFLEREAEKYESPIPSREFILEHLAKRETPASREEIGNELNLSGEEALEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRLEGVKKDDVYLSAEQMKMCI
HGDVVLAQPVGTDRKGRREARIVRVLVPKTSQIVGRYFTDAGAGFVVPDDSRLSFDILIP
ADAINGARMGYMVVVELTQRPTRRTKAVGKIVEVLGDKMGTSMAVDIALRTHEIPHVWPP
QVLKQVEDLSEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI
ADVSYYVRHGTALDDEARSRATSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAQGKLTSSKFYEAVMSSHARLTYNKVWRIIEGDPELREQYSPLVKHLLELHTMYKVLDQ
ARAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANIAAARFVEKHNE
PALFRVHDRPSDDHISALKSVLGELGLVMGGGMKPEPKDYAQIMDELADRPDREMLQTML
LRSMKQAIYDPENRGHFGLALPSYGHFTSPIRRYPDLALHRAIKYLLAKEHGTLKDRWTP
TGGWHSDYEDMLQLGEHCSMAERRADEATRNVADWLKCDFMQDHVGETFTGIIASVTGFG
FFVRLNDLFIDGLVHVSSLDNDYYRYDNIGQRLVGESSGAVYRLGDTVEIRVEAVHMDER
KIDFALVSSTRKARGEGKTARDRAKKGGERTMRSAAPANAGRRRTAKKNVNFEPDSAFRK
DDAKTAKPKKEKAASAVGKDGKPKKVKKPSDKTAKIAAATRAKRAKKKQPDS
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcacccattcccagc
cgtgaatttattctggaacatctcgctaaacgggaaaccccagccagccgggaagagatc
ggtaacgaactgaatctgtccggagaagaagccctggaagctctgcgtcgccgtctgcgc
gccatggagcgtgatggccagttagtctttacccgccgtcagtgctacgcgctgccggag
cgtctggacttgctgaaaggcacggtcatcggtcatcgcgatggttacggtttcctgcgt
ctggaaggcgtaaagaaagacgatgtgtatctttctgctgaacaaatgaaaatgtgcatc
cacggtgacgtggtactggcacagccggtcggtaccgaccgtaaaggccgccgtgaagcg
cgcatcgtgcgtgtgctggtgccgaaaaccagccagattgtaggccgttactttaccgat
gccggtgccggttttgtggttcccgacgacagccgtctgagctttgatattctgatcccg
gccgatgccattaacggtgcgcgcatgggatatatggtggtggtcgagctgacacagcgt
ccgacccgccgcaccaaagcggtcggtaaaattgttgaagtgctcggcgataaaatgggt
accagcatggcggtagatatcgctctgcgtacccatgaaatcccacacgtctggccgcca
caggttctgaaacaggtcgaagacctgagtgaacaggtgccggaagaagcgaaaaaaggc
cgcgtggatttacgcagtctgccgctggtcaccattgatggtgaagatgcccgcgatttc
gatgacgccgtgtactgtgagaaaaaacgtggcggtggctggcgcttatgggtggcaatc
gccgacgtgagctattacgtccgtcacggcactgcgctggacgatgaagcccgcagccgc
gcgacgtcggtgtatttcccgtcgcaggttgtaccgatgctgccggaagtgctgtctaat
ggcctgtgttccctgaacccgcaggtagaccgcctgtgtatggtctgtgagatgactatc
tccgcgcagggtaagctgaccagctccaaattctacgaagccgtgatgagctctcacgcg
cgtctgacatacaacaaagtctggcgcatcatcgaaggtgatccggaactgcgtgagcaa
tattcaccgctggtcaagcatctgcttgaactgcacaccatgtacaaagtattggatcag
gcgcgtgcagaacgtggtggtatcgcgttcgaaaccgaagaagcgaaattcatcttcaat
gctgagcgccgtatcgaacgtgtcgaaccgacggtgcgtaacgatgcccacaaactgatc
gaagagtgcatgatcatggcgaacattgctgccgcgcgttttgttgaaaaacataacgaa
ccggccctgttccgcgtgcatgaccgtccaagcgatgaccatatctcggcgctgaaaagt
gtgctgggtgaactgggtctggtgatgggcggcggcatgaaacctgagccgaaagattat
gctcagatcatggatgaactggccgatcgtcctgaccgcgagatgctgcaaaccatgctg
ctgcgttcgatgaaacaggcgatttacgatccggaaaaccgtggccactttggtctggca
ttgccttcttacgggcactttacgtcgccaatccgtcgttatccggatctggcactgcac
cgtgcgatcaagtatctgctggcaaaagagcatggcacgctgaaagatcgctggacgcca
accggcggctggcacagtgattacgaagacatgttgcaactcggtgagcattgttcgatg
gcagaacgccgtgcggatgaagccacccgtaacgtcgctgactggctgaagtgcgacttc
atgcaggatcacgtgggcgaaaccttcaccggcattatcgccagtgtcactggcttcggc
ttcttcgtgcgcctcaacgatctgttcattgacggtctggtgcacgtgtcatcgctcgac
aacgattattaccgttacgacaacatcggccagcgtctggtgggggaatcctccggcgcg
gtttatcgcctgggcgatacggtagaaatccgcgttgaagccgtgcacatggacgaacgt
aaaatcgattttgcgctggtttccagcacccgcaaagcacggggtgaaggcaaaaccgca
cgtgaccgcgcgaaaaaagggggcgaacgtaccatgcgttctgccgcgccagccaatgcg
ggccgtcgccgtactgctaagaaaaacgtgaactttgagccggacagtgcattccgcaaa
gatgacgcgaaaacggctaaaccgaagaaagagaaagcggccagtgctgtgggtaaagac
ggtaagccgaagaaagtcaaaaagccttctgacaaaaccgcaaaaattgcggcggccacc
cgagccaaacgcgcgaagaaaaagcagcctgacagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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