KEGG   Riemerella anatipestifer RA-GD: RIA_0898
Entry
RIA_0898          CDS       T02007                                 
Name
(GenBank) DNA polymerase III, epsilon subunit related 3'-5' exonucleases
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
rar  Riemerella anatipestifer RA-GD
Pathway
rar03030  DNA replication
rar03430  Mismatch repair
rar03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RIA_0898
   03430 Mismatch repair
    RIA_0898
   03440 Homologous recombination
    RIA_0898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rar03032]
    RIA_0898
   03400 DNA repair and recombination proteins [BR:rar03400]
    RIA_0898
Enzymes [BR:rar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RIA_0898
DNA replication proteins [BR:rar03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RIA_0898
DNA repair and recombination proteins [BR:rar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RIA_0898
SSDB
Motif
Pfam: RNase_T DEDDh_C DNA_pol_A_exo1 RNase_H_2 Rv2179c-like
Other DBs
NCBI-ProteinID: ADZ12031
Position
complement(870168..871391)
AA seq 407 aa
MYSVIDIESNGGAFREECIIEVAIYRYDGHKIVDQFISMVNPEADISHFVQKLTGITPKM
VKTAPKFHEIAKRIIEITEGSTLVGHNVDFDYRMLRQSFKRLGYHFSIETLDTIPLAKKL
IPNEESYSLGKLVKSLGIPLAEHHRASSDARATLDLFKLLMTKDKDNEIIQSHFEEANAK
TYFNKIKALTQDLPAERGIVYFQDARGKVILSEVTDGIYKFAKKVFNAKSKKWQKIQNEV
EQISYELVASELFAKLIMNTKGLAKTTHLPYGLFFENDEWLVKRVRRDMPLLPMIKFKTH
SQGRKVLNFIKNHEVLNNKEALEQFLSFKDKNILFTGQGRTRGEKSFLLIEKGQVSGYGF
YDWYHQISTYDKLSKLKIKVDRVSSDLKNEIKLALLRNEFKIQEIPS
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtattcggtaatagacatagagagtaatggtggtgcattccgagaggagtgcattata
gaggtcgctatctatcgttatgatgggcataagatagtagaccaatttatctctatggta
aatccagaagccgatatttctcatttcgttcaaaaactgacaggcatcacgcctaaaatg
gttaaaacagctcccaagttccacgaaattgccaaaagaattattgaaattacggaagga
agcaccttagtagggcataatgtagattttgattatagaatgttaaggcagtcttttaag
agattgggttatcatttcagtatagaaacattagacactatacctttagccaaaaaactt
attcctaatgaagaaagttattctttggggaaattggtaaaatctttaggaatacctttg
gcagaacatcatagagcaagtagtgatgctagagcaacgctagacctttttaaactgcta
atgactaaggataaagataacgagattatccaatcccactttgaggaagctaatgcaaaa
acttacttcaataaaattaaagctcttacgcaagatttaccagcagaacgagggattgtt
tatttccaagatgctagaggaaaggttattttatccgaggttacagatggtatttataag
tttgcgaagaaggtatttaatgccaaatctaaaaagtggcaaaaaatacaaaatgaagta
gaacagatttcttatgaactagtggcgtcagagttgtttgcaaagctgattatgaatact
aaaggtcttgccaaaacgacacatttgccgtatggacttttttttgaaaatgatgaatgg
cttgtcaaaagagtgcgtagagatatgccgttattgcctatgattaaatttaaaacccat
tcgcaggggagaaaagtgcttaattttattaaaaatcacgaagttttaaataacaaagaa
gctcttgaacagtttttaagttttaaagataaaaatatcctttttacaggacagggcagg
acgagaggcgaaaaatcgtttttgttgatagaaaaaggacaagtgtcgggttatggattt
tacgattggtatcaccagataagcacttacgataaactttcgaagttaaaaataaaagta
gatagagtttcttctgatttgaaaaacgaaataaagttagccttgctcagaaatgagttt
aaaatacaggagattcctagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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