KEGG   Mucinivorans hirudinis: BN938_1298
Entry
BN938_1298        CDS       T03205                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rbc  Mucinivorans hirudinis
Pathway
rbc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rbc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BN938_1298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbc03021]
    BN938_1298
   03400 DNA repair and recombination proteins [BR:rbc03400]
    BN938_1298
Enzymes [BR:rbc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BN938_1298
Transcription machinery [BR:rbc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BN938_1298
DNA repair and recombination proteins [BR:rbc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BN938_1298
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: CDN31387
UniProt: A0A060R7W6
Position
1291928..1296124
AA seq 1398 aa
MSFNKKDTKQPGNFNRITISLASPETILERSSGEVLKPETINYRTYKPERDGLFCERIFG
PVKDFECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHISLVVPVAHIWYFRSLPNK
IGYLLGVPTKKLDAVIYYERYIVVNKGVASGVENGELLAEKEYLDLLATLPKGNQQLEDG
HPDKFEAKMGAEAIYEMIQKVDLDALSYSLRHKANTETSQQRKAEALKRLYVVEAFRESR
EINKPEWMIMKVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQEAVDSLFDNSRKSNAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMHECGIPKDMAAELYKPFIVRKLIERGIVKTVKSAKKIIDRKDSVVW
DILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVH
LPLGNAAILEAQILMLGSHNILNPANGAPITVPSQDMVLGLYYMTKERKDVKGEGLVFYS
PEEAIIAYNEKRAGLHAKVKLRLGTGNLIDTTVGRIIFNEHVPVEAGYINELLTKKNLRD
TIGSIMKKAGAAKTATFLDDIKSLGYQMAFRGGLSFNLEAVIIPKEKEKLVAEGYTQVEE
VMENYNMGMITNNERYNQVIDIWTNVNSRLSNAVKKQLVEDMDGFNPVYMMMHSGARGSE
AQIRQLSGMRGLMAKPQKSSADSAQIIENPILANFKEGLSVLEYFISTHGARKGLADTAL
KTADAGYLTRRLVDVAQDVIVSQEDCGTLRGLQTMALKRNEEEVASLYDRILGRTSVHDV
INPQTNELLVRAGEEIDEEVALAIEKSPIEMVEIRSVLTCESRKGTCAKCYGRNLSTGRM
AQMGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGSVVDNKITARYDGRIVIEEIRAVER
KNDSGGKYFVIISRMAEVKIVDENTGQTLFTTPLPYGGSLHFANGSTVKKGDVICEWDPY
NAVIISEFQGKVAFESLIEGITYREEMDEATGFREKVIIESKAKDKNPVIRIVDKEGLEL
KQYNLPVGAHISVKDGAKISAGDILIKIPRVVGKAGDITGGLPRVTELFEARNPSNPAVV
SEIDGEVSYGKIKRGNREIIVTSRLGEVKKYLVPLAKQILVQENDFVRAGMALSEGAVTP
GDILSIQGPTKVQEYIVNEIQEVYRLQGVKINDKHFEIIVRQMMNKVRIEDPGDTRLLEE
QVVDKWEFMMVNDEIYDKKVITAAGSSTELKEGQIVTLRQLRDENSILKRKGLSPVEYRD
AVPATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAIFGKVDPLGKLKENVICGHL
IPAGTGLRKYADLEVSVK
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgtcatttaataaaaaagatacaaaacagccgggtaatttcaatcgaattaccatctcg
cttgcctcgccagaaacgattttggagcggtcgagcggtgaagtgctaaaacccgagacc
atcaactaccgcacatacaaacctgagcgtgacggtctcttctgcgaacgcatcttcggt
cctgtcaaagatttcgagtgccactgcggtaagtacaaacgtattcgttacaagggtatc
gtttgcgaccgatgcggggtggaagttaccgaaaagaaggttcgccgcgaacgctcggga
cacatctcgcttgttgtgcccgtggctcacatatggtatttccgcagcctgccaaacaag
attggctacctgctgggcgtgccaactaagaaactggatgccgtaatctattacgagcga
tatattgttgttaataaaggcgttgccagcggtgttgagaatggcgaactgctggctgag
aaggaatatctcgatttgttggctaccctgccaaagggaaatcagcagctggaggacgga
caccccgacaagttcgaggctaagatgggtgccgaggctatctacgagatgattcagaag
gtagacctcgatgcgctctcatactcgcttcgccacaaggctaacaccgaaacttcgcaa
cagcgtaaagctgaggcgctgaagcgcctatatgtcgtagaggcattccgcgaaagccgc
gaaattaataagcctgagtggatgattatgaaggttctgccggtgattccgcccgagctt
cgtcctcttgtgccattggacggcgggcgttttgctacgtcggacttgaacgacttgtat
cgccgcgttatcattcgtaacaaccgtctaaagagactaatagagattaaagctccggaa
gtcatcctacgtaacgagaaacgtatgttgcaggaagctgtggatagcctttttgataac
tcacgtaagtctaatgctgttaaaaccgaatcaaatcgtccgcttaaatcattgagcgac
tcattgaagggtaaacagggacgtttccgccaaaatcttttgggtaaacgtgtggactac
tcggcgcgttcggttatcgtggtaggtcctgagttgaagatgcacgagtgtggtattccc
aaggatatggcggcagagctctacaagccgtttatcgttcgtaaacttattgaacgcggt
atcgtaaaaacggtaaaatcggctaagaaaatcatcgaccgtaaggattctgttgtgtgg
gatattctcgaaaatgtgattaagggacaccccgttctactgaaccgtgctccgaccctt
caccgtctcggtatccaagcgttccagccaaaactgattgagggtaaggctatccagctc
cacccactatcttgtactgcattcaacgccgactttgacggtgaccaaatggcggtgcac
ttgcccctgggcaatgccgcaatattggaggctcagattttgatgctcggctcgcacaat
atcctcaaccctgccaatggcgcacccattactgtcccttcacaggatatggtgcttggt
ctgtattatatgaccaaggaacgtaaagatgttaagggcgagggacttgtattctattct
ccggaggaggcaatcattgcgtataacgaaaaacgtgccggtttgcacgcgaaggtaaaa
cttcgtcttggcacgggtaacctgattgatacaaccgtagggcgtattatctttaatgag
cacgtacccgtagaggcaggctacattaatgaacttctcacgaagaaaaacttgcgcgac
actatcggctctattatgaagaaggcgggagcagcaaaaactgcaactttcctcgacgat
attaagagtctcggttaccagatggcattccgcggcgggttgtccttcaacctcgaagct
gtgattatccccaaggagaaagaaaaactcgtagccgaggggtatactcaggttgaggag
gttatggagaactacaatatgggtatgattaccaacaacgagcgctacaaccaggttatc
gatatttggacgaacgtaaactcgcgcctgtcgaacgccgtgaagaagcagttggtggag
gatatggacggtttcaacccggtatatatgatgatgcactcaggtgcgcgtggttcggag
gctcagattcgtcagctctccggtatgcgtggtctgatggcaaaacctcagaagtcatct
gctgactcggcacagattatcgagaacccaatcttggcgaacttcaaagagggtctctcg
gttttggaatactttatctctactcacggtgcgcgtaagggtcttgccgacacggctctc
aagactgccgatgccggctacttgacacgccgtttggtggatgtggctcaggatgtgatt
gtctctcaggaagattgtggcacgctacgcggtctgcaaactatggcactcaaacgtaac
gaagaggaggtggcatcgctctatgaccgcattttgggacgtacctccgtgcacgatgtt
atcaatccgcaaaccaatgagttgctggtgagagccggcgaggagattgatgaagaggtg
gcactagccatcgaaaagtcgcctatcgagatggtggagattcgttcggtgctcacctgc
gaaagccgcaagggtacttgcgccaaatgttacggacgtaacctctcgacgggtcgtatg
gcacaaatgggtgaagttgtgggtgttatcgcagcacagtctattggtgaacccggcaca
cagcttactctgcgcacattccacgtcggtggtgttgcgggtggctcggtggtggacaac
aagattacggcacgctatgacggtcgcattgtgattgaagaaattcgtgccgtggagcgc
aaaaacgactccggcggcaaatacttcgtcattatcagccgtatggcggaggtgaaaatt
gtggatgaaaatacgggtcagacactcttcacaacgccgcttccttatggtggttcgctc
cacttcgcaaacggaagcacggtgaaaaaaggtgatgtaatttgtgagtgggacccatac
aatgccgtgattatctctgaattccaaggtaaggttgccttcgagtctttgattgaaggt
atcacctaccgcgaggagatggacgaggcaacaggcttccgcgagaaggtcatcatcgaa
tctaaggcgaaggacaaaaaccccgttatccgaattgtggataaggagggtcttgaactt
aaacaatataacctgcccgtgggtgcgcacatttcggttaaggacggtgcgaaaatctcg
gctggcgacatattgataaaaattccacgcgttgtgggtaaggcgggtgacatcaccggt
ggtcttccacgcgtgacagagctcttcgaggcgcgtaaccccagcaacccggcggttgtt
tcggaaatagacggcgaggtgagctacggtaaaatcaagcgcggtaatcgtgaaataatt
gtaacttcacgccttggtgaggtcaagaaatatcttgttccgttagctaaacagattctg
gttcaggagaatgacttcgttcgtgccggtatggctctctcggagggggctgtcactccc
ggcgacatcctctcaatccaaggacctacgaaggttcaggagtatatcgttaatgaaata
caggaagtttaccgcttacagggtgtgaagattaacgacaaacacttcgagattatcgtt
cgccagatgatgaacaaagtgcgtattgaggacccgggtgacacacgccttttggaagag
caagttgtggataagtgggaatttatgatggttaatgacgaaatttatgacaagaaggta
atcacggcggcaggtagctcgacggagttgaaagagggacagattgttacccttcgtcag
ttgcgcgatgaaaactcgatactcaaacgtaaagggctttcgcccgtggagtatcgcgat
gctgtgccagcaacttccacccagattttgcagggtatcacacgcgccgctttacaaaca
agtagctttatgtcagccgcttcgttccaagagaccaccaaggttcttaacgaggctgca
atcttcggcaaggtagacccattgggtaaactgaaagagaacgtcatctgcggacactta
attcctgccggaacagggctccgcaaatatgcggacttagaggtttcggtgaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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