KEGG   Rubrivivax benzoatilyticus: RBXJA2T_03272
Entry
RBXJA2T_03272     CDS       T04092                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rbn  Rubrivivax benzoatilyticus
Pathway
rbn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rbn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RBXJA2T_03272 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbn03021]
    RBXJA2T_03272 (rpoB)
   03400 DNA repair and recombination proteins [BR:rbn03400]
    RBXJA2T_03272 (rpoB)
Enzymes [BR:rbn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RBXJA2T_03272 (rpoB)
Transcription machinery [BR:rbn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RBXJA2T_03272 (rpoB)
DNA repair and recombination proteins [BR:rbn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RBXJA2T_03272 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: EGJ09317
AA seq 1373 aa
MAQATPYTFTERKRIRKSFGKRESVLKVPYLLTMQSDSYVAFLQKDVPPQQRKPEGLQAA
FLSAFPIVSHNGFVEMKFLEYNIAKPPFDVRECQQRGLTFAAAVRAKLQMIIYDRESHPA
KVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILSHFFVFDNFR
LMDSGAQMEFVPERLKGEIARFDLTDKNGAVIVEKDKRITARHVRQLEQSGTTFVSVPED
FLVGRVIARNMVDPDTGEIVAKANDEVTESLLKKLRSAGIKDIQCLFTNELNQGAYISQT
LASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYSEDTYDLSRVGRMKFNARVG
RDVPDGKMTLSNEDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETP
YRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDGEGRLIDELVSARENGESVLLSPERV
QYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERVAAV
DSGTVVTARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VRRGDHVGAGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTS
IHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVNPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLAGKVANGGPQKIAKGTTITKEYLATVEKYHW
FDIRPSEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVAVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHL
GWAGKGIGHRIGDMLQQQARAAELREFLDELYNQSGGKTESLQDLSDDEIVEMAKNLQHG
VPFATPVFDGAHEEEIRGMLKLAYPDELAARKGLTATRTQATLHDGRTGEAFERPVTVGY
MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQE
MLTVKSDDVNGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELERD
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggcgcaagcaaccccctacacgttcaccgagcgcaagcgcatccgcaagagcttcggc
aagcgcgagagcgtgctcaaggtcccctatctgctgacgatgcagagcgactcctacgtc
gccttcctgcagaaggacgtgccgcctcagcagcgcaagcccgagggcctgcaggccgcc
ttcctatcggccttcccgatcgtctcccacaacggcttcgtggagatgaagttcctcgag
tacaacatcgcgaagccgccgttcgacgtgcgcgagtgccagcagcggggcctgaccttc
gccgccgccgtgcgcgcgaagctgcagatgatcatctacgaccgtgagtcgcatccggcc
aaggtcgtcaaggagatcaaggagcaggaggtctacatgggcgaagtgcccctgatgacc
gactacggctccttcatcgtcaacggcaccgagcgtgtcatcgtcagccagctgcaccgt
tcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctg
ttcagcgcccgcatcatcccctaccgcggctcctggctggacttcgagttcgacccgaag
gacatcctgtacttccgcgtcgaccgtcgccgcaagatgccggtgacgatcctgctcaag
gccatcggcctgaaccccgagcagatcctcagccacttcttcgtcttcgacaacttccgc
ctgatggattcgggcgcgcagatggagttcgtgccggaacgtctgaagggcgagatcgcg
cgcttcgacctgaccgacaagaacggtgccgtcatcgtcgagaaggacaagcgcatcacc
gcgcgccacgtgcgccagctcgagcagagcggcaccacgttcgtcagcgtgcccgaggac
ttcctcgtcggccgcgtcatcgcgcgcaacatggtcgacccggacaccggtgaaatcgtc
gccaaggccaacgacgaggtcaccgagtcgctgctgaagaagctgcgctcggccggcatc
aaggacatccagtgcctgttcacgaacgagctgaaccagggcgcgtacatcagccagacg
ctggcctctgacgagaccgccgaccagctcgccgcgcgcgtggcgatctaccgcatgatg
cgccccggcgagccgccgaccgaggacgccgtcgaagcgctgttccatcgcctgttctac
agcgaggacacctacgacctgtcgcgcgtcggccgcatgaagttcaacgcccgcgtgggt
cgcgacgtgccggacggcaagatgacgctgtccaacgaggacatcctcgacgtcgtcaag
atcctcgtcgacctgcgcaacggcaacggcgaagtcgacgacatcgaccacctgggcaac
cgccgcgtgcgctgcgtcggcgaactggccgagaaccagtaccgctcgggcctcgcgcgc
atcgagaaggccgtcaaggaacgcctcggccaggccgagaccgaagccctgatgccgcac
gacctgatcaactccaagccgatcagcgcggcgctcaaggagtttttcggggcgagccag
ctctcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgtcgtgtc
tcggccctgggcccgggcggtctgacgcgcgagcgcgccggcttcgaagtccgcgacgtg
cacccgacccactacggccgcgtctgcccgatcgagacgccggaaggcccgaacatcggc
ctgatcaactcgctggcgctgtacgcgcaactcaacgagtacggcttcctggagacgccg
taccgccgcgtcgtcgacggcaaggtcaccgaccagatcgactacctgtcggccatcgag
gaaggcaagtacgtcatcgcccaggccaacgcgacgctggacggcgaaggccgcctgatc
gacgaactggtctcggcgcgcgagaacggcgaatcggtgctgctgtcgccggagcgcgtg
cagtacatggacgtggcgccgacgcagatcgtctcggtcgcggcctcgctcgtgccgttc
ctcgagcacgatgacgcgaaccgcgcgctgatgggcgccaacatgcagcgccaggccgtg
ccgacgctgcgtccggagaaggcgctggtcggcaccggtgtcgaacgcgtcgccgcggtc
gactcgggcaccgtcgtcaccgcccgccgcggcggcatcgtggactacgtcgacaccaac
cgcatcgtcatccgcgtcaacgacgacgagacggtggccggtgaagtcggcgtcgacatc
tacaacctgatcaagtaccagcgttcgaaccagaacacgaacatccaccagcgcccgatc
gtgcgccgcggcgaccatgtcggcgccggcgacgtcgttgccgacggtgcctcgaccgac
ctgggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccctggaacggctac
aacttcgaagactcgatcctgatcagcgagcgtgtcgtcgccgacgaccgctacacctcg
atccacatcgaggaactggtcgtgatggcccgcgacaccaagctgggctccgaggaaatc
acgcgcgacatccccaacctgtccgagcagcagctggctcgcctggacgagtcgggcatc
gtctacatcggcgccgaggtcaacccgggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagacgacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcc
tccgacgtgaaggacacctcgctgcgtgtcgaccagggcaccagcggtaccgtcatcgac
gtgcaggtcttcacccgtgaaggcatccagcgcgacaagcgcgcccagcagatcatcgac
gacgaactgaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgac
gccttcgaccggatcgagaagctgctggccggcaaggtcgccaacggcggcccgcagaag
atcgccaagggcacgaccatcaccaaggaatacctggcgacggtcgagaagtaccactgg
ttcgacatccgcccgtccgaggacgaggtcgccaaccagctcgagtcgatcaagaactcg
ctcgagcagacccgccacagcttcgacctcgcgttcgaagagaagcgcaagaagctgacg
caaggcgacgagctgcccgccggcgtgctgaagatggtgaaggtctacctcgccgtcaag
cgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcc
aagatcgtcgcggtcgaggacatgccctacatggccgacggcacgccgtgcgacatcgtg
ctgaacccgctgggcgtgccctcgcggatgaacgtcggccaggtcctcgaagtgcacctg
ggctgggccggcaagggcatcggccatcgcatcggcgacatgctgcagcagcaggcgcgt
gccgccgaactgcgcgagttcctcgacgagctctacaaccagtccggcggcaagaccgaa
tcgctgcaggacctgagcgacgacgagatcgtcgagatggcgaagaacctgcagcacggc
gtgccgttcgcgacgccggtgttcgacggcgcgcacgaggaggagatccgcggcatgctc
aagctcgcctacccggacgagctggcggcgcgcaagggcctcaccgccacgcgcacccag
gccacgctgcacgacggccgcaccggcgaagccttcgagcgtccggtcacggtcggctac
atgcacgtgctgaagctgcaccacctggtcgacgacaagatgcacgcccgctcgaccggc
ccgtacagcctggtcacgcagcagccgctgggcggcaaggcgcagttcggtggccagcgc
ttcggtgagatggaagtctgggcgctcgaggcctacggcgccagctacatcctgcaggag
atgctgaccgtcaagtccgacgacgtgaacggccggaccaaggtctacgagaacatcgtc
aagggtgagcactcgatcgaggccggcatgccggaatcgttcaacgtgctggtcaaggaa
atccgttcgctcggtatcgacatcgagctggagagggattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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