KEGG T00585: Rcas

Roseiflexus castenholzii DSM13941: Rcas_3449

Entry

Rcas_3449 CDS T00585

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rca Roseiflexus castenholzii DSM13941

Pathway

rca03410	Base excision repair
rca03420	Nucleotide excision repair
rca03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rca03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rca03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rca03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4505191..4506825)

AA seq 544 aa
MRHFAQLYTDLDETTRTGAKVEALMRYFERAEPADAAWAIFFLIGRRVRQAVPLPTLRAW
AVEAAGIPDWLLGECYDAVGDFAETVALLLPEPGEWSVDVDRSVLSFEGPQPLHRWVEDV
LIPLRDREEAVQRAIVRAVWATLGGTERFVWNKLITGAFRVGVSQQLVVRALARASGTDP
AAIAHRLMGEWQPSAAFYRALLARETADADVSRPYPFCLAHPLDDPPETLGSIDEWQAEW
KWDGIRIRLIRRAGQTFLWSRGEELMTDRFPEIAASGALLPDGIVIDGEVLPWKHGTVLP
FAQLQRRIGRKNLTRAVLDEAPATLLAYDLIELNGVDVRHQPLEWRRTELERLIATCAPD
SQALLLSPVIVAADWDDLAAQWATSRARNVEGLMLKRRNSPYRVGRVRGDWWKWKVAPYT
IDAVLIYAQRGSGKRASLYTDYTFAVWDGDRLTPFAKAYSGLTDDEIREVDAFVRRNTVE
KFGPVRTVTPALVFELAFEGVQRSNRHKSGIAVRFPRILRWRRDKRPADADTLERVRALL
PEES

NT seq 1635 nt +upstreamnt +downstreamnt
atgcgacactttgcccaactgtacaccgatctcgatgagaccaccagaaccggcgcgaag
gtcgaggcgctgatgcgctattttgagcgcgcagaaccggctgacgctgcctgggcgatc
ttcttcctcattggtcggcgcgtgcgtcaggctgtgccgttgccgacgctccgcgcctgg
gcggtcgaggcggccggcattcccgactggctccttggcgagtgctacgacgccgtcggc
gactttgccgagacggtcgcgctgttgctgccggaacccggcgagtggtcggtggatgtg
gaccggtcggttctgtcgtttgaaggtccgcagccgctccatcgctgggtcgaggatgtt
ctgatcccgctgcgtgatcgggaggaggcagtgcagcgcgcgattgtgcgtgctgtatgg
gcgacccttggcggaaccgagcgttttgtctggaacaaattgatcaccggcgcatttcgg
gttggcgtctcacaacaactggttgtgcgggcgttggcgcgcgccagcggtacggaccct
gctgcaattgcgcaccgcctgatgggtgaatggcaaccgtccgccgccttctaccgggcg
ctgctggcgcgcgagactgccgacgccgatgtgagtcgtccatatcccttctgcctggca
cacccgctcgatgatccgcccgaaacgttgggatcaatcgacgaatggcaggcggaatgg
aagtgggacggcatccgcatccggttgatccgccgcgccgggcaaacctttctctggtcg
cgcggcgaagaactgatgaccgaccgtttccccgaaattgcggcaagtggcgcacttctc
cctgatggcatcgtcatcgacggcgaggttctgccgtggaaacatggcacggtgttgcct
ttcgcgcagttgcagcgccggatcgggcgcaagaacctgacacgcgccgttctcgacgaa
gcgccggccacgctcctggcatacgacctgatcgaactcaatggcgtcgatgtgcgtcac
caaccgctggagtggcgaagaacagaactggagcgcctgattgcgacctgtgcgccggat
agtcaggcgctgctgctctcgccggtgattgttgctgccgattgggacgacctggcggcg
cagtgggccacctcgcgtgcgcgcaatgtcgaaggtctgatgctcaaacgacgcaattcg
ccctaccgcgtcggtcgggtgcgcggcgactggtggaagtggaaagtcgccccctacacc
attgatgcagtgctgatctacgcgcagcgcggcagcggtaagcgcgccagcctctacacc
gactacaccttcgccgtgtgggacggcgaccggttgacgccgttcgccaaagcgtattcg
ggactgaccgacgacgagatccgcgaagtggacgccttcgtaagacgaaataccgtggaa
aagtttggaccggtgcgcaccgtgacgccagcactggtctttgagctggcattcgagggc
gtccagcgctcgaaccgccataaatcggggattgccgtgcgtttcccgcgcattctgcgc
tggcggcgcgacaagcgcccggctgacgccgatacgttggaacgggtgcgcgccctgctg
ccagaggaatcatga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RCA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system