KEGG   Ruminococcus champanellensis: RUM_15920
Entry
RUM_15920         CDS       T02600                                 
Name
(GenBank) ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rch  Ruminococcus champanellensis
Pathway
rch03420  Nucleotide excision repair
rch03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RUM_15920
   03430 Mismatch repair
    RUM_15920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rch03400]
    RUM_15920
Enzymes [BR:rch01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RUM_15920
DNA repair and recombination proteins [BR:rch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RUM_15920
   MMR (mismatch excision repair)
    Other MMR factors
     RUM_15920
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 Viral_helicase1 PcrA_UvrD_tudor UvrD_C_2 AAA_30 AAA_12 GBS_Bsp-like
Other DBs
NCBI-ProteinID: CBL17680
UniProt: D4LDI5
Position
1730815..1733160
AA seq 781 aa
MRSYDELKRSALERFFGKMNPMQQEAVFAVNGPVLVLAGAGSGKTTVIVNRIANMVYFGN
AYHESGRTVSQEDLDFLQGYVDGRETDIDRLRDVIASAPIRPWNILAITFTNKAAGELKS
RLEAMLGEQGRDVHAATFHSACVRILRQEIERLGYDRSFTIYDSDDSQRIIKGCLSDMNI
SEKQFPPKSILGEISRAKDKLLDPDQLEAQASGDYRRLAIAKIYREYQNRLKKSNAVDFD
DIIRLTVQIFSEFPDALEKYRSKYKYILVDEYQDTNQAQFRLVSLLSAAHQNLCVVGDDD
QSIYKFRGATIENILNFEEQFTGSKVIRLEQNYRSTGTILDAANSVIRHNRSRKEKKLWT
QGDKGSKIYWYRAMNEMDEAKFVAQTILEHVQQGSTYSSHAVLYRMNAQSNMLERAFVQS
GVPYRVYGGMRFFDRKEIKDITAYLSVIDNSNDMLRFRRIINEPKRGIGDATLSMLDDIT
RDLGLSPMEVLRNAGDYPVLSKKAASLRSVAKMFDALTEAAETLPLDEFFDLLLEKTGYK
AMLTAMGDEGVTKLENVEELKSTLLTYMEGAEEPTLSGFLEEISLYTDQDRNEEADDAVT
LMTIHSAKGLEYDTVFLIGMEDGIFPGVRSMESEESLEEERRLAYVAITRAKRQLYLVSA
AQRMLFGTTNRNLTSRFLKEIDPELIEKHDNTVSARNVKEPAVTAVHSISLQQQLAKQKS
QAGTGEQSVHYAQGDRIHHNIFGDGTILTVREMANDALLEIEFDKVGKKKLMANFAKIKK
I
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgagatcctatgatgaactaaagcggtcagcattggagcgttttttcggcaagatgaac
ccaatgcagcaggaagcggtttttgcagtcaacggaccggttctggtgcttgcgggggcg
ggcagcggcaaaacaaccgttattgtcaaccgaatcgccaatatggtttacttcggaaat
gcctatcacgaaagtgggcggacggtttctcaggaggatctggattttttacagggctat
gtggatggtagggaaacagatattgaccggctgcgggatgtgattgcatctgcgcctatc
cggccatggaatattcttgccatcacctttacaaataaggcggcaggggaactgaaatcc
cggttggaagctatgcttggggagcaggggcgggatgtacatgcggcgacctttcattcc
gcatgcgtgcggatcctgcggcaggagatcgaacggctggggtatgaccgaagctttacc
atttacgattctgacgacagccagcgtatcatcaagggctgcctgtccgatatgaacata
tccgaaaagcagttcccccccaagtccattctgggagagatcagtcgtgccaaggacaag
ctcctggatcccgaccagttggaggcacaggcatccggggattaccggcggcttgccatt
gcaaagatctaccgggagtatcaaaaccgattgaagaaatccaatgcggtggattttgat
gatatcatccgcctcaccgtgcagatcttttcagaattcccggatgcactggaaaagtac
cgcagtaagtataagtatattctggtggatgagtatcaggacaccaaccaggcgcaattc
cggctggtgagcctgctgtccgctgcccatcagaacctgtgcgtggtgggagatgatgac
cagagcatctacaaattccggggtgctaccattgaaaatatcctgaattttgaggagcag
tttaccggcagtaaggtgatccggctggagcagaactaccgttccaccggtacgatcctg
gatgcggcaaactcggtgatccggcacaaccgttcccggaaggaaaagaagctgtggacc
cagggggacaagggcagcaagatctactggtaccgtgccatgaacgaaatggacgaggcg
aaatttgtggcacagaccattctggagcatgtgcagcaggggagtacctacagcagccat
gcggtactgtaccggatgaatgcccagtccaatatgctggagcgtgcctttgtgcagagc
ggtgtgccctaccgggtatacgggggcatgcggttctttgaccggaaggaaatcaaggat
attaccgcatatttaagcgtcattgacaacagcaatgatatgctccggttccgccggatc
atcaacgagcccaagcggggcatcggggacgccaccctgtccatgctggacgatatcacc
cgggatctggggctgtcccccatggaggtgctgcggaacgcaggggattatccggttctg
tcgaaaaaagcagcaagcctgcgcagtgtggcgaaaatgtttgatgctttgacagaagcg
gcggaaacactgcctttggatgaattctttgatctgttgctggagaaaaccggctataag
gcgatgctgaccgcaatgggggatgagggcgttaccaagctggaaaacgtggaggagttg
aaatccactctgctgacctatatggaaggggcagaggagcctacgctcagcggctttttg
gaggaaatctccctgtacacggatcaggatcggaacgaggaagcggacgatgcggtgact
ctgatgaccatccactctgccaagggtctggagtatgataccgtgttcctgatcggtatg
gaggatgggatcttccccggcgtgcggagcatggaaagcgaagaatccctggaggaggaa
cggcggctggcgtatgttgccatcacccgtgccaagcggcagttgtatctggtcagtgcg
gcgcagcgtatgctgttcggtaccaccaaccggaatctcacctcccggttcctcaaggag
atcgacccggaattgatcgaaaagcacgacaatacggtttccgcacggaatgtgaaggaa
ccggcggtcactgccgtgcattctatttccctgcagcaacagcttgccaagcaaaaatcc
caggcaggcaccggagagcagagcgtccattacgcccagggggatcggatccaccacaac
attttcggggatggtacgattttgaccgtgcgggaaatggcaaacgatgccctgctggag
attgagttcgacaaggtgggcaagaaaaagctgatggcgaatttcgccaagatcaaaaaa
atataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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