KEGG   Rickettsia conorii: RC0181
Entry
RC0181            CDS       T00061                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rco  Rickettsia conorii
Pathway
rco03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RC0181 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rco03021]
    RC0181 (rpoB)
   03400 DNA repair and recombination proteins [BR:rco03400]
    RC0181 (rpoB)
Enzymes [BR:rco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RC0181 (rpoB)
Transcription machinery [BR:rco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RC0181 (rpoB)
DNA repair and recombination proteins [BR:rco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RC0181 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: AAL02719
UniProt: Q9RH41
Position
179174..183295
AA seq 1373 aa
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYSGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGCVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKFAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLK
GLSKGQFWQIIVEDANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEEIIS
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaactttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcgatttttcctatttcagattcctccaatattgctaat
ttagaatttgtaaaatatgaatttgatactccaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaagattaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcacctggtgtattcttttatcatgatgaaggaaaagtccac
tcttccggcaagcttttatattctgctcgtgttattccatatagagggtcttggcttgat
ttagaattcgacgctaaggatgtgatttatttcaggattgatagaaaaagaaagctttat
actactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtagatgcagataccggaaatattcta
ctgaaagcaggacaaaaaattactccgcgtttggctaaaaaatattctggggaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaaga
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgattactgctgatatgctc
aatgttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatcc
ggtccatatataaggaacaccttatttgctgataaaaatcaggatcgtgaggcagcatta
tgtgatattttcagagttctaagaccaggcgaacctgctaatatcgaagcggctgaaagc
ctgttttataatttattctttgatacggaaagatatgatctgtcagaagtcgggcgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaatagaagggttagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctgtcggcactcggtcccggaggtcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatccgactcattacggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaagatggatgtgtaaccgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaatcggacaagcaaattctaaaatt
aataaagacggaaagctgcaaggagagtttattaattgccgtgttgaaggcggtaatttt
gtaatggtagaaccgtatgaggtagacttcattgatgtgactcctatgcaggtagtatcg
gttgcggcttctcttatacctttcttagaaaacgatgatgctaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattctggagcgtcagtgcttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaactctagaacaaaaagttgac
ggttctccttcggttgatatttataacttactaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgacggtcctagtaccgataacggtgaaattgctttaggtcgaaacgtgcttgtggct
ttcttaccttggaacggttataattttgaagattccattttaatatccgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaggtcggaataatttatataggtgcagaagtaaaagccggtgatatttta
gttggaaaagtaacaccaaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgacgtaaaagattcatcgctgcatgtaccttccgga
gtgagcggaactgtagtagaagtaagggtattttctcgtagaggtgtagaaaaagaccag
cgagctattgctattgaaaaacaacaaattgaaaaattcgcaaaagacagagacgatgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtagggcaggtg
attattaacggtcctaagcaagtaaaagtaggacaaactattactactgaaatgctaaaa
ggcttatctaaagggcaattttggcagattatcgtggaagatgcaaatgtaatgaatgaa
atagagcagataaagactcattatgatgagaaaaaagaggctcttgataaaagatttgct
actaaggtagagaaattgcaaagtggtgatgatttacctcagggagctttaaaagtagta
aaagtatttattgcaactaagcataaattacaacccggggataaaatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccgtttttagaagat
ggaactgtggtagatatcgttcttaaccctctaggtcttccgtcccgtatgaatatagga
cagattttagaaacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaaaataaacatataggtattgagcagattaagaaattcttaatt
gaactgtatggagaaaatattaattctatacttgaaagaccggaagaagagattatctct
ttttgtaagaaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggacgttaaagatatgctaaagcttgccggtcaagacccttcaggacaagtgaaa
ttaattgacggtagaaccggtgaatattttgaccgtctagtaactgtcggacagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcactcccgttctataggaccttat
agcttagtaacgcagcaaccgcttggaggtaagtctcatttcggcggacagcgtttcgga
gaaatggaatgctgggcattacaagcttacggtgcagcttatacgttacaggaaatgtta
acggttaagtcggatgacgtaaatggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcaagttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system