KEGG   Rhodobacter capsulatus: RCAP_rcc02838
Entry
RCAP_rcc02838     CDS       T01213                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
rcp  Rhodobacter capsulatus
Pathway
rcp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rcp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RCAP_rcc02838 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcp03019]
    RCAP_rcc02838 (rnr)
   03016 Transfer RNA biogenesis [BR:rcp03016]
    RCAP_rcc02838 (rnr)
Enzymes [BR:rcp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     RCAP_rcc02838 (rnr)
Messenger RNA biogenesis [BR:rcp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RCAP_rcc02838 (rnr)
Transfer RNA biogenesis [BR:rcp03016]
 Prokaryotic type
  tRNA degradation factors
   RCAP_rcc02838 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1
Other DBs
NCBI-ProteinID: ADE86567
UniProt: D5AP62
Position
complement(3026578..3028833)
AA seq 751 aa
MTQSPIPTKQQILDWIAENPDQGAKRDIAKAFGLKGAAKIELKRLLKELSAEGQITRRKS
HYHDQASLPPVTVLEILPADAMGDLWARPVEWAGPGEAPRIAFLTRRDDPAVGPGERVLA
RIAQGTEGPEARLIRKLGQARHRIVGIFRKGAEGGRITPIDKGEMNEWVVPPGATNDARD
GELVEAEQSGPKGRMGLPRARVIERLGDPTAPRAVSLIAIHQHGIPDDFPDDVIAEADAE
LPAALGDREDLTGLPFVTIDPADARDRDDACFVAPDEDPANAGGFLLWVAIADVAHYVRP
GSALDREARNRGNSTYFPDRVVPMLPDRLSGDLCSLHEHVPRAVLAVRMKVSAEGRKIAH
RFTRGIIRSVASLEYAQVQAAQDGRPDDKTAPLVAEIIAPIYACYRALTRARAARQPLDL
DLPERRIEIDEAGKVASVKFKERLDAHRLIEEFMVLANVAAAEELERLRRPLLYRVHEEP
SPEKIDALREVAQASGFSLAKGQVLKTAHLNRLLSEAEGSEFDELINISTLRSMTQAYYA
PQNLGHFGLALRSYAHFTSPIRRYSDLIVHRALIAGHGWGKDGLSRDDIAQLEDTAQHIS
ETERRSMAAERDTTDRYLAAYLSERVGSEFTGRISGVQKFGAFVKLDETGADGLVPIRSV
GREFFHYDRDAQQLIGADSGITLGIGQRVLVRLAEAVPVTGGLELELLELEGQAMPGAGR
GGKRPFRPGRKSVAFKAKERAISRKVKRSRK
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgacacaaagccccatcccgacgaagcagcagatcctcgactggatcgccgaaaacccc
gatcagggggcgaaacgcgatatcgccaaggccttcgggctgaagggcgcggcgaagatc
gagttgaagcgccttttgaaagagctgagcgccgagggccagatcacccggcgcaagagc
cattatcacgatcaggccagcctgccgccggtgacggtgctggaaatcctgcccgccgac
gccatgggcgatctttgggcgcggccggtggaatgggcgggtcccggcgaggcgccgcgg
atcgcctttctgacccgccgcgacgatcccgcggtggggccgggcgaacgcgtgctggcg
cggattgcgcaagggaccgaggggcccgaggcgcggctcattcgcaagctcggtcaggcg
cggcatcgcatcgtcggcatcttccgcaagggcgccgaagggggccggatcacccccatc
gacaagggcgagatgaatgaatgggtggtgccgcccggggcgacgaatgacgcccgcgac
ggcgagctggtcgaggcggaacagtcggggccgaagggccggatgggcctgccgcgggcg
cgggtgatcgagcgtctgggcgatccgaccgcgccgcgggcggtgtcgctgatcgccatt
caccagcacggcattcccgacgatttccccgatgacgtgatcgccgaggccgatgccgaa
ctccccgccgccttgggcgatcgcgaagacctgaccggcctgccctttgtcaccatcgac
ccggccgatgcccgcgaccgcgacgacgcctgtttcgtggcccccgacgaggatccggcg
aatgcgggcgggttccttctgtgggtcgcgattgccgatgtggcgcattacgtccgcccg
ggctcggcgctggatcgcgaggcgcgcaatcgcggcaattccacctatttccccgaccgc
gtcgtgccgatgctgcccgaccggctgtcgggtgatctgtgttccttgcacgaacatgtg
ccgcgcgcggtcttggcggtgcggatgaaggtttcggccgaggggcgcaagattgcgcat
cgcttcacccggggcatcatccgctcggtcgcctcgctggaatatgcgcaggtgcaggcg
gcacaggatggccgccccgatgacaagaccgcgccgctcgtcgcggagatcatcgcgccg
atctacgcctgttaccgggcgctgacccgggcgcgggcggcgcggcaaccgctggatctg
gatctgcccgagcgccggatcgagatcgacgaggcgggcaaggtcgcctcggtcaagttc
aaggaacggctcgacgcgcatcggctgatcgaggaattcatggtgctggccaatgtcgcc
gccgccgaagagctggaacggctgcgccgcccgctgctctaccgcgtgcacgaggaaccc
tcgcccgagaaaatcgatgctttgcgcgaggttgcgcaggcgtccgggttcagtctggcg
aaggggcaggtgctgaagaccgcgcatctgaaccggcttttgtccgaggccgagggcagc
gagtttgacgagctgatcaacatttccaccctgcgctcgatgacgcaggcctattatgcg
ccgcagaatctggggcatttcgggctggcgctgcggtcttacgcgcatttcaccagcccc
attcggcgctattccgacctgatcgtgcatcgggcgctgattgccgggcatggctggggg
aaggatggcctcagccgcgacgacatcgcccagcttgaagacaccgcgcagcacatctcc
gagaccgagcggcgctcgatggcggcggaacgcgacaccaccgaccgctatctggcggcc
tatctgagcgagcgggtgggcagcgaatttaccgggcggatcagcggcgtgcagaaattc
ggcgccttcgtgaagctggatgagaccggggcggacgggctggtgccgatccgatccgtg
gggcgggaattcttccactacgaccgcgatgcgcaacagctgatcggcgccgacagcggc
atcacgctcggcatcgggcagcgggttctggtgcggctggccgaggccgtgccggtgacc
ggcgggctggagctggaattgctggagctggaaggtcaggcgatgcccggcgcgggcagg
ggcggcaagcggccgttccgtccggggcggaaatccgtggccttcaaggcgaaggaacgg
gcgatctcgcgcaaggtcaaacgcagccgcaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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