KEGG   Ricinus communis (castor bean): 8278417
Entry
8278417           CDS       T01087                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8278417
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcu03041]
    8278417
Spliceosome [BR:rcu03041]
 Complex C
  Other components
   Step II factors
    8278417
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C AAA_22 DEAD AAA_19 AAA_30 ABC_tran nSTAND3 SLFN-g3_helicase AAA_16 AAA_23 AAA_14 AAA_29 FtsK_SpoIIIE Sigma54_activ_2 ATPase_2 T2SSE Helicase_RecD MMR_HSR1 AAA_33 DAP3
Other DBs
NCBI-GeneID: 8278417
NCBI-ProteinID: XP_002514958
UniProt: B9RMI9
Position
7:complement(28110169..28120105)
AA seq 702 aa
MANLPIIQFEDKIIKTVEENPVVVIIGETGSGKSTQLSQMLHRRGYTKSGIIGITQPRRV
AAVSVARRVAQELGVTLGEEVGYAIRFEDRTSELTRIKYLTDGVLLRESLSGPELNQYSV
IILDEAHERSLNTDVLLGLVKRLVKLRASNLKVLITSATLDGEKVSEFFSGCPILNVPGK
LYPVEIMYSKERPTSYIESALKTAIDIHTREPEGDILIFMTGQDDIEKLVMKLEDRIRSL
EEGSCMDAIILPLHGSLPPDLQVRVFAPPPPNCRRFIVATNIAETSLTVDGVVYVVDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYEDDFLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSYESLEDALKQLYLIDAIDENGSITSVG
RTMAELPLEPSLSRTLMEANENGCLSQALTVAAMLSAETTLLPSRSRTTEKKRKHTSFEF
DLPDGCGLGDHIQLLQIFLDWDENDYDIDWCKENGLQVRGMKFVKDVRKQLCQIMQKIAK
GSLDVRAGCKKREEEYKNLRKALCAGYANQLAERMVHHNGYRTIGFKHQLVQVHPSSVLR
SDEYGMFPNFILYHELIATSRPYMRNVCAVENSWVDPVLEKLKKLNINKLSGGLGQIARD
GNEGKISDLPQKVDLSSARVSDDPESRIQSARERFLARKAKK
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggcgaatcttccaattatacaattcgaagataaaatcataaaaacagtagaagagaat
ccagtagtagtaatcatcggagaaactggttcaggcaagagcacgcagctttctcaaatg
ctgcaccgcagaggttacactaaatccggaatcatcggcatcactcaaccccgtagagtc
gctgcagtatctgttgcaagacgagttgctcaagagcttggagtaacgcttggagaggaa
gtaggttatgctattcggtttgaagataggacttcagagttaacacgaattaaatatcta
actgatggagtccttcttcgtgaaagtctatctggtccggagctcaatcagtattcagtt
atcatattggatgaagctcatgagagaagtttgaacacggatgttttattgggactggtg
aaacgcttggttaaattgcgtgcttccaatttaaaggttctcatcacatcagcaactcta
gatggtgaaaaagtatcagaattcttttcaggttgccctatactgaatgtccctggaaag
ttataccccgtggaaataatgtacagcaaggagcgtccaacgagctatattgagtctgct
ttaaaaacagctattgatatacatactcgtgaacctgaaggagacatcttgatattcatg
actggacaggatgatatagagaagttggtgatgaagctggaggatagaattcgaagccta
gaggaaggttcctgcatggatgcaattatccttccactccatggttccttgccacctgat
ctacaggtgcgtgtatttgctcctccgccgcctaattgtagacgctttattgttgcaaca
aacattgctgaaacttctttgactgttgatggtgttgtgtatgttgttgattctggttat
gtaaagcaacggcagtacaacccatcaacaggcatgtattcccttgatgttgtacaaatc
agcaaagtgcaagccaatcagcgtgcaggacgagcaggaagaacgcgacctgggaagtgc
tacagattatacccgtctatggtttacgaagatgatttccttgatgtaacagttcctgag
atacagcgatcttcacttgctggcagtgtcctttacttgaaatcattggatcttccggat
attgacattctcaagtttgatttccttgatcccccttcatatgagtcactagaagatgct
ttgaaacagctatatctcattgatgctattgatgaaaatggatccattactagtgttggg
cggacaatggccgaacttccattggagccctcactttcaagaaccttaatggaggcaaat
gagaatggttgcttgtctcaggcattgactgtggctgctatgctatcagcagaaaccaca
ttacttcccagtcgaagcaggactactgaaaagaagcggaaacacacctcctttgagttt
gaccttcctgatgggtgtggtttgggcgatcacatccagctgctgcagatctttctggac
tgggatgaaaatgattatgatattgattggtgcaaagaaaatggtttgcaggtgcgggga
atgaagtttgtcaaagatgtccggaaacagttgtgtcagataatgcagaaaatagcaaag
ggatcattagatgtacgggcaggctgtaagaaacgggaagaggagtataagaatttgagg
aaagccttgtgtgcgggctatgctaatcaacttgctgagaggatggttcatcacaatggc
tatagaactataggttttaagcatcaactggttcaggtgcatccatcttctgtcctaaga
agtgatgaatatggaatgttcccaaacttcattttgtaccatgagctcattgcaacctcc
cgtccatacatgcggaatgtgtgtgctgtggagaattcttgggttgatcccgtcttggaa
aagctcaagaaactgaatatcaacaaactgagtgggggtcttggtcaaattgcaagagat
ggaaatgagggaaagatctcagacttgccgcagaaagtggatctttctagtgctagggtt
tccgatgaccctgaaagtagaattcagtcagctagggagcgttttcttgcgcgtaaagca
aagaaatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (23)   
   Pfam (23)   
All databases (45)   

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