KEGG   Ricinus communis (castor bean): 8289455
Entry
8289455           CDS       T01087                                 
Name
(RefSeq) DNA polymerase alpha catalytic subunit
  KO
K02320  DNA polymerase alpha subunit A [EC:2.7.7.7]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03030  DNA replication
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8289455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcu03032]
    8289455
Enzymes [BR:rcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     8289455
DNA replication proteins [BR:rcu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase alpha / primase complex
    8289455
SSDB
Motif
Pfam: DNA_pol_B zf-DNA_Pol DNA_pol_B_exo1 DNA_pol_alpha_N DNA_pol_B_2 DUF1744 DNA_pol_B_exo2 Nop5_56-rel_N_Arc
Other DBs
NCBI-GeneID: 8289455
NCBI-ProteinID: XP_002523609
UniProt: B9SC90
Position
7:3157775..3168908
AA seq 1526 aa
MENDEPVTAARRRTRGPEATARASALERLKALRQGGRRSENGAGYDIKMETPIFDTVSED
DYDKLVAQRRLEAQGFIVDDDGLGYGDEGEEEDWSQAGLPPSSDESDGGETNNKNRSKRK
KTEKKEKGKSKVIKKVNSSLSAAAAALMGKQRISSMFTSTVFKNRDKNLDCENIVDDVIA
EFAPDENDRERRRRVQLPVKIEGDVVNLTVNGGLGRGVMNDCDNVVKLGQNCSVDEREGM
VMEAKEVEKGVDYDEKREILAEVKETAVVVKEETESERGRVLNAKISIEEKDPAFSAMAD
WQAVRSGGNGSVAGVTEEVKSGVVCDEQSEFELEADGSLPFYIIDAHEEIFGANMGTLYL
FGKVKAGNTYHSCCMVVKNMQRCVYAIPNGSIFHTEDMIRLEKDVEESRISPAEFRKKLQ
DVAYELKNEIANQFLSLNVSSFSMTPVKRKYAFERQDIPVGENYALKINYSFKEPPLPAD
LKGETFSALLGTHCSALELFLVKRKVKGPSWLSVSKFSTCPASQRVSWCKFEITADSPKD
IRVSSSSKNTIEIPPVVVTAINLKTIINEKQNVNEIVSASLICCHKAKIDTPMLASEWKK
PGMLSHFTVVRKLDGGIFPMGFSKEVTERNTQAGSNVLGIESSERALLNRLMIALNKLDS
DVLVGHNISGFDLDVLLHRSQACRVPSSMWSKIGRLKRSIMPKLTKGNTMFGSGASPGIM
SCIAGRLLCDTYLCSRDLLKEVSYSLTELARTRLNKDRKEVTPHDIPRMFQSSKSLIELI
EFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYI
VPDKNSFHLKKETKMTKRRIHNGVEEKNAEELDTDHANFDNDSPENDRGKGKKGPAYVGG
LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTDGLVPRLPSIKTTGVLPEL
LKNLVERRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELI
TLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLEDITKAKAIAGKVIQEVNKKYRC
LEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCL
AQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYIITKTLTKPPEAYPDAKNQPHVM
VALRLKQSGYTTGCSVGDTVPYIICCEQGATPGSSSGIAQRARHPDELKKDDGKWMIDID
YYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSSEAINNDPASSLLFAVNDE
ERYRSCEPLLLSCPSCSGTFECPAVFGSICTSISANPTKLQVEESVSNFWCRMRCPKCPE
EGDTGRISPAMLANQVKRQAEGFVSMYYKGLMTCDDETCKHITRSLNLRLIGDSERGTVC
PNYPRCNGRLVRKYTEAELYKQLSFYCYLLDTVRCMEKMDAGTRISLEKKITKIRPMVDL
AVSTVQKIRDRCAYGWVQLSDLSVTV
NT seq 4581 nt   +upstreamnt  +downstreamnt
atggagaacgatgagccagttacggcagctagacgccgtaccagagggccagaagcaaca
gcacgagcatcagccttagaacgactcaaagcgctacgtcaaggaggccggagatcagaa
aatggtgctggatatgacatcaaaatggaaactccaatcttcgacacagtctccgaggac
gattacgataaactcgttgcacaacgtcgtttggaggctcaaggcttcattgtcgacgat
gacggtctaggttacggcgatgaaggcgaagaagaggactggtctcaggctgggttacct
ccatcttcagatgaatctgacggaggagagacaaataataagaacagatctaaaagaaaa
aagacggaaaagaaagagaaaggcaaaagtaaagtaataaagaaagttaacagttcgcta
tcagcggcggctgctgcgcttatgggaaaacaaaggatatcgtcgatgtttacatcgaca
gtgtttaaaaatagagataagaatttagattgtgagaatattgttgatgacgttattgca
gagtttgctcctgacgaaaacgacagagaaaggcgcaggagagttcaattacctgttaag
attgagggtgatgttgtcaatttgacggttaatggcggtttaggcaggggtgtcatgaat
gattgtgataacgtggttaaattaggacaaaattgtagtgttgatgagagagaagggatg
gttatggaagctaaagaggtggaaaaaggagtggattatgatgagaagagggagatttta
gctgaagttaaagaaacggcggtggtggtgaaggaggagactgagagtgagagggggcgt
gtgcttaatgcaaagattagtattgaggagaaggatcctgcttttagtgcaatggctgat
tggcaagcagtgagaagtggtggaaatggaagtgttgcgggtgttactgaggaggttaag
agcggggtcgtttgtgacgagcaatctgagtttgagcttgaggctgatggttcgttgcct
ttttatataattgatgctcacgaagagatttttggtgctaatatgggtaccctctatctc
tttgggaaggtgaaagcaggaaatacatatcacagttgctgtatggttgtaaagaacatg
cagagatgtgtttatgctattccaaatggttccatttttcatacggaggacatgatcagg
ctggaaaaagatgttgaagagtcacggatttcgcctgctgagttccgtaaaaagctgcaa
gatgtggcatacgagctaaaaaatgaaatagcaaaccaattcttatctctcaatgtttca
agttttagcatgactcctgttaagaggaaatatgcatttgagcgacaagacatacctgtt
ggggagaattatgcacttaagatcaactactcattcaaggagcctccacttccagcagat
ctgaaaggggaaaccttctctgcactgcttggaactcattgcagtgctttagagcttttt
cttgtcaaaaggaaagtgaagggaccatcatggctctcagtttctaagttctcaacatgt
ccagcttcacagagagtgagctggtgcaagtttgagatcactgctgactcaccaaaagac
atacgagtttcgtcttcctcaaagaacacaatagagattcctccagtggttgttacagca
ataaatttgaagaccatcataaacgaaaagcagaatgtgaatgaaatagtctctgcatcc
ctcatttgttgtcacaaggctaagattgacacaccaatgttggcctcagaatggaaaaaa
cctggtatgctgagccattttactgttgtccgaaagcttgatgggggaatattcccaatg
gggttctccaaagaggtgactgaaaggaatacacaggcaggatcaaatgttctaggcatt
gaaagcagtgaaagagctttgttgaatcgtctgatgattgcattaaacaaattggatagt
gatgttcttgttgggcataatatatctggctttgacctggatgttctactccacagatcc
caggcttgtcgtgtgccaagcagcatgtggtccaaaattggtcgtcttaagcgttctata
atgcctaagcttacaaaaggaaatactatgtttggatctggagcaagtccagggatcatg
tcttgcattgctggtcgcctcttatgtgatacatatttgtgctcccgggacttgttaaaa
gaggttagttattctctgacagaactagcaagaactcgcctaaacaaagatcggaaggag
gttacaccacatgatattcccagaatgttccagtcatcgaaatcgcttattgaattgatt
gaatttggagagacagatgcatggttatctatggaactcatgtttcatttgagtgttctt
cctctcacacgtcagctgactaatattagtggtaatctctggggaaaaactctccaaggt
gctagggcacagagagtggagtatcttctactgcatgcatttcatgcaaagaagtatatt
gtacctgacaagaattcctttcatctaaaaaaggagacaaaaatgacaaagcggagaata
cataatggcgttgaagaaaaaaatgctgaagagttggatactgatcatgccaattttgat
aatgacagtccagagaatgaccgtggaaaagggaaaaaaggccctgcttatgtaggcggt
ctagttttggagcccaaaaagggtctatatgacaaatatgtattgcttctggacttcaat
agtctttatccttctattattcaggagtataatatttgcttcacaacagttgaaaaatct
acagatggattggtccctcgtttaccttctatcaaaacaactggagttctaccagagttg
ctgaaaaatctggtcgagaggaggagaatggtcaaatcatggatgaagaatgcatctggt
ctcaaggtccagcagcttgacattcagcaacaggcattaaagctcactgcaaatagtatg
tatggatgccttggattttcaaattcaagattttatgcaaagcctcttgcagagcttatt
actctacaggggcgggagattctgcagagtactgtggatcttgttcaaaataatttgaac
ttggaggtcatatatggcgatacagattcaatcatgatttatagtggtttagaagatatc
acaaaagcaaaagctattgcagggaaagtcatccaggaggttaacaagaagtacaggtgt
ttggaaattgatcttgatggcttgtacaagagaatgttgcttctgaagaagaaaaaatat
gcagctgtcaaacttcagttcaaagatggtacaccatatgaggtcattgaacgtaaaggt
cttgacatggttcgccgtgactggagcttgctatcaaaggaattaggagatttctgcctt
gctcaaatcttgtctgggggatcatgtgaggatgtagttgaatcaatacataactccctt
atgaaggtacaggaggaaatgaggaatggacaagtagcacttgagaagtacattattaca
aagacattaactaaaccacctgaagcctaccctgatgccaaaaatcaacctcatgttatg
gtagcactaagattgaagcagagtggctatactactggttgctctgttggtgatacagta
ccatatattatttgctgtgagcagggtgctactcctggaagttcgtcaggaattgctcaa
cgggctagacatcctgatgaattgaaaaaagatgatgggaaatggatgattgacatagat
tactacctgtcacagcaaatccatcctgtggtatcacgtctgtgtgcttcaattcaagga
acaagcccggaacgtttggctgattgtctgggccttgactcatccaagtttcaaattaaa
tcaagtgaagccataaacaacgatcctgctagctcacttttgtttgctgtcaacgatgag
gaaagatataggagctgtgagccattgctcttgtcatgtcccagttgctctggtactttt
gaatgtcccgctgtcttcggttccatttgtacgtcaatcagtgcgaacccaacaaaactg
caggtagaggaatctgtgtctaatttctggtgcaggatgcgttgccctaaatgcccagaa
gaaggtgataccggcagaatatctcctgcaatgttagcaaaccaggtaaaaaggcaagcg
gaggggttcgtttctatgtactataaaggcttaatgacgtgtgatgatgaaacttgtaag
catattacccgcagccttaatctacggctaataggcgattcagaaagaggaacagtttgt
ccaaactatcctcgctgcaatggccgtcttgtgagaaagtacactgaagcagaactctac
aagcagctttcattttactgctatctattggatacagtccgttgcatggaaaagatggat
gccggcactagaatatcactagagaagaagattaccaagatacggccgatggttgatttg
gcagtatcaacagtgcagaagatcagggatcggtgtgcttatggatgggtacagttgagc
gacttaagtgtcacagtttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (41)   

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