KEGG T01087: RCOM

Ricinus communis (castor bean): RCOM_0075460

Entry

RCOM_0075460 CDS T01087

Definition

dead box ATP-dependent RNA helicase, putative

Orthology

K12811

ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]

Organism

rcu Ricinus communis (castor bean)

Pathway

rcu03040

Spliceosome

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:rcu03040]

SSDB

Motif

Pfam:

DEAD Helicase_C

Other DBs

NCBI-GI:

255578793

NCBI-GeneID:

8264040

UniProt:

B9SW84

AA seq 1173 aa
MEDVKLKSRKEESEKKDEDSKRSHRDRERERDKERNGERHRDREKKDRGSRRSEREKSTD
SDDKYEKEREKKDKEKHKDRRSRDDERERTKDRKRDREERGKDRDRDRDSERDREREEKR
ERAREKERERERDRERERREREREERERERERERERERRERDKEEREKERERERERERER
DRERRAREKEKRREISSDDNSEDDSRGHDRKRRRRDEDDYRERAREQSTSRSSRHRDESD
GSPRKKSGEDELDKKEKKTREEELEDEQKRLDEEMEKRRRRVQEWQELRRKKEESEREKH
GEASNADEPQTGKTWTLEGESDDEEAPLAGKSETNMDLDENAKPDEEIGDAMVVDSYNGT
ATSENGDNDVIEDEEIDPLDAFMNSMVLPEVEKLNNAVITETVDENKVELKKKKEEGNEG
EKLKKGSNKSLGRIIPGEDSDSDYGDLENDEGPLDDEDDDEFMKRVKKTKAEKLSVVDHS
KIDYKPFRKNFYIEVKEISRMAPEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLASKILE
TIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPLVEAGDG
PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGR
MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR
QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLGEWNEKGKILIF
VQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDV
KELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVV
PEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKKAQAKEYGFEEDKS
DSEDEDEGIRKAGGDISRHNAALAQQLVAIAAASKSTTSATPTPITAGQLLPPGGLPVSL
PGVIGLTIPGPAAVVPGAGLPVINNDNTAKAIAAAINLQHNLAKIQADAMPEHYEAELEI
NDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPSETSV
KKAKAELKRVLEDITNQALSLPGGAQPGRYSVI

NT seq 3522 nt +upstreamnt +downstreamnt
atggaggatgtgaaacttaaatcaaggaaagaagaatcagaaaaaaaggacgaggattcg
aagaggagccaccgtgatcgagaaagggagcgtgataaggagagaaatggagagaggcat
cgcgaccgagagaagaaggaccgtggaagccgccgctctgagagagagaagagtactgat
tctgatgataaatatgagaaagaaagggagaagaaggacaaagaaaagcacaaggatagg
aggagccgggatgatgaaagagaaaggaccaaggacaggaagagagatcgagaagaaaga
ggtaaggatagagatagagatagggacagtgagagggaccgagagagggaggagaaaagg
gagagagcaagagaaaaagagagggagagagaaagagacagagagagggagcgaagggag
cgtgaaagagaagaacgcgagagggaaagagagagagaaagagagagggagagaagggaa
cgtgacaaagaagaaagagagaaggagagggagagggagagggagagggagagggaaaga
gacagagagaggagggcaagggaaaaggagaagcgtcgagagattagcagcgatgataac
agcgaagatgattctaggggacatgataggaagcgtcgaaggagggatgaggatgactac
agggagagagcacgggaacagagcactagcaggtcaagcaggcacagggatgaaagtgat
gggagcccaaggaaaaagagtggtgaggatgaattggataagaaagagaagaaaacccga
gaggaggaattagaagatgaacagaagagattggatgaggaaatggaaaagaggagaaga
cgagtacaggagtggcaagagttgaggagaaaaaaggaagaatctgagagagaaaagcat
ggggaagcatcaaatgctgatgaaccccaaacaggtaagacttggacccttgaaggagaa
tctgatgatgaagaagcacctcttgcagggaaatcagagacaaatatggacctggatgaa
aatgcaaagcctgatgaagaaattggagatgcaatggtggtagactcttataatggcaca
gctacttcagaaaatggggataatgatgtcatcgaggatgaggaaattgatcccctagat
gctttcatgaattccatggtcttacctgaagttgagaagctaaacaatgcagtgattact
gaaactgttgacgaaaataaagtggagttgaagaagaaaaaggaagaaggaaatgaggga
gagaagctgaagaaaggctctaacaaatctctggggagaataatacctggggaggattct
gattcagattacggagaccttgagaatgatgaaggtcctttagatgatgaagatgatgat
gagttcatgaagagggtcaagaagacaaaagcagagaagctatctgttgttgaccactca
aagattgattataaaccatttcgaaaaaatttctacatagaagtgaaggagatatcaaga
atggctccggaagaggttgctgcttataggaaacaattagaactgaaaatacatggaaag
gatgttccaaaaccagttaaaacatggcaccaaactggacttgcaagtaaaattttggag
acaattaagaagcttaattatgagaagcctatgccaatacaagctcaggcactgcccata
ataatgagtggcagagactgcatagggattgcaaaaactggctctggcaaaacccttgca
tttgtgctgcctatgctgaggcatatcaaggaccagccacttgtggaagctggagatgga
ccgattgggcttataatggcacctacaagggagcttgttcaacagatccacagtgatata
aagaagtttgccaaggtactgggaattagatgtgtgcctgtatatggaggttctggcgtt
gctcaacagatcagtgaattaaagcggggaactgagattgttgtctgtactccaggtagg
atgattgacatactttgcacaagtggggggaaaattacaaatcttcgtagagtcacatat
ttggttatggatgaagctgatcgtatgtttgacatgggctttgaacctcagatcaccaga
attgttcaaaacattcgcccagatcgtcaaactgtgctgttttctgccactttccctcgg
caggttgagattttggctcgtaaagtgttaaacaaacctgtggagatccaggtgggtggg
aggagtgtggtgaacaaggacattactcaattagttgaggtaaggcctgaaagtgaaagg
ttcttgagactgttagaactacttggtgagtggaatgagaaaggaaaaattttgatattc
gtccaatcacaggataaatgcgatgctctgtttagggacttgcttaagcatggctatcca
tgcctttcacttcatggggctaaggatcaaacagaccgtgagtctaccatttcagatttc
aagagcaatgtctgcaatttgttgattgccacgagtattgctgccagaggtttagatgtg
aaggagcttgatctggtggtcaattttgatgttccaaaccattatgaggattatgttcac
cgtgttggtcgaacgggcagagctggccgcaaaggttgtgcaatcacatttatttctgag
gaggatgcaagatatgcaccagatcttgtaaaagcattggaactctcggagcaagttgtt
ccagaggacctgaaagctcttgctgatggttttatggtaaaagtgaaccaggggcttgag
caagctcatggaactggttatggtggaagtggttttaaattcaatgaagaggaggatgaa
aagaggatagcagcaaagaaagcacaagcaaaggaatatggctttgaggaagacaagtca
gattcagaagatgaagatgaagggattcgtaaggcaggtggtgacatttcaaggcataat
gctgcgcttgctcagcagttagttgcaattgctgctgcctccaaaagcactacatctgca
acaccgactcctatcacggctggtcaattgcttcctcctggcggattacctgtttctttg
ccaggagtcattggcctaacaattccaggcccagcagcagttgtgcctggagctggactg
cctgttatcaataacgataacacagccaaggcaattgcagctgccatcaacttgcagcat
aaccttgcaaagattcaagctgatgccatgcctgaacattatgaagcagagcttgagatt
aatgattttccacaaaatgctcggtggaaggttacccacaaggaaactttgggtccaatt
tccgactggactggtgctgccattacaaccaggggccagttcttcccaccaggtcggatt
ccaggaccaggggaacgcaagctgtacttgttcattgagggccctagtgaaacatctgtt
aagaaagctaaagcagagcttaaacgtgttttggaagacatcacaaaccaggcattatca
cttcctggtggagctcaaccaggaagatactcggtcatataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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