KEGG T01087: RCOM

Ricinus communis (castor bean): RCOM_0962120

Entry

RCOM_0962120 CDS T01087

Definition

nucleotide binding protein, putative (EC:4.4.1.4)

Orthology

K14548

U3 small nucleolar RNA-associated protein 4

Organism

rcu Ricinus communis (castor bean)

Pathway

rcu03008

Ribosome biogenesis in eukaryotes

Class

Genetic Information Processing; Translation; Ribosome biogenesis in eukaryotes [PATH:rcu03008]

SSDB

Motif

Pfam:

Alliinase_C EGF_alliinase WD40 PQQ_2 Aminotran_1_2

Other DBs

NCBI-GI:

255566736

NCBI-GeneID:

8283219

UniProt:

B9SED3

AA seq 1176 aa
MLEAAYRNSSIEWKPSSVIALATSVDDSQVAAAREDGSLEIWLVSPGSVGWHCQLSIHGD
PNSRVSSLVWCRGDDTKGLPCGRLFSSSIDGSVLQWDLFHLKQKTVLESIGVSIWQMAVA
PSSNLLSDANNESQHLGNGFLNAKENDSDSESESQDDSDSDELHVHSVVEDPRVALACDD
GCVRIYTISDSDEFIYNKTLPRVSGRVLSVTWSSDASRIYTGSSDGFIRSWDAKLGHEIY
RITAGLGGLGSESELCIWSLLALRCGTLVSADSTGSVQFWDSQHGTLLQAHSSHKGDVNA
LAAAPSHNRVFSAGSDGQVILYKLSGETVGSSDDVSAKSMKKWVYIGYVRAHTHDVRALT
VAVPISREDSVPDEKVKRIRSRKRPIDFSYHKWAHLGVPMLISAGDDTKLFAYSAKEFTK
FSPHDICPAPQRVPIQLVLNTVFNQNSLLLVQGSNWLDILCLRMKSGTMQDASPGPSRDH
ANTDLLARIKTKASRKIICSTISNSGTLLAYSDHVKPNLFELKKLNGKASWSVNKRQLPQ
KLPFAHSLIFSSDNARLMIAGHDRRIYVVDVGSSELVHTFTPRHEGDDEELPPSEPPITK
MFSSGDGQWLAAVNCFGDVYIFNLETQRQHWFIARLDGASVTAGGFPPQNNNVLVVTTSL
NQVYAFDVEAKQLGEWSMRHTFVLPKRYQEFPGEVIGLSFLPRSSPPSVIIYSARAMCLI
NFGMPVDREEENDLVNGQHSPLKKLQNTLINGRLKRRRAAKEAETVAAISCSGHGRVFLD
GLILDGKQNPVCECSSCYGGPDCSQFFPSCSVNADGGDPLFLEPFWMQNAASSAVVVAGW
HRMSYTYDDHSAISQELERLIRKLHATVGNAVTEGRYIIFGAGSTQLLNAAVNSLSPDNS
SSPARVVASIPFYPVYKLQTDLFQSVNFRFQGDASLWRNNSDTSTEMIEFVTSPNNPDGQ
LKKAVLEGSNVRAIYDHAYFWPHFTAIPAPADGDMMLFTLSKLTGHAGSRFGWAVIKDEI
IYQRMLTYLTFNTMGVSRESQLRALKLLKVVLQGGGNAIFEFGYETMRKRWERLSNTISM
SKRFSLQKISPQYCNFFQGLREASPAYGWVKCERQEDKDCFAVLQAGNITSRRGSLFGVG
DQYVRLSLIRRQDDFDLLIHRLTQLVSKEDGPRSSI

NT seq 3531 nt +upstreamnt +downstreamnt
atgcttgaagctgcatataggaatagttcaatagagtggaaaccgtcatctgttatagcc
ctagccacaagtgtagacgactctcaagtcgctgccgcacgtgaggatggttctcttgag
atttggctcgtctctcctggctccgttggttggcactgccagctgagtattcatggagat
cctaattcgagagtttcttcgcttgtttggtgtcgaggtgatgacactaaaggattacct
tgtggcaggttgttttcttcgagtattgatggttctgttttacaatgggatcttttccac
ttgaagcagaagactgttctagaatcaattggtgtctccatttggcagatggctgttgca
ccatctagtaatttgctaagtgatgcaaataatgagtctcagcaccttggaaatggattt
ttaaatgctaaagagaatgatagtgatagtgaaagtgaaagtcaagatgattcagactcg
gatgaacttcacgtacattctgttgttgaggatccacgtgtagcacttgcttgtgatgac
gggtgtgtgcggatatacactatttccgactcggatgagtttatatataataaaacgttg
cctagggtcagtgggcgtgttttaagtgtgacatggagttctgatgcaagtagaatttat
actgggagtagtgatggatttataaggtcctgggatgctaaattgggtcatgagatatac
aggattacagctggactcggtggtttgggcagcgaatctgaactctgtatatggtcttta
cttgccctcagatgtggcacccttgttagtgcagatagcactggtagtgttcaattctgg
gattctcagcatgggacactgttacaggcgcattcttctcacaagggtgatgtgaatgct
ctggcagctgcacctagtcataacagggtgttttctgctggatctgatggtcaggttatt
ctgtataagctttctggtgagacagttggatctagtgatgatgtatctgctaagtctatg
aagaaatgggtatatattggatatgtaagagctcacacacatgatgttagggcgttgaca
gtggctgtaccaatcagtcgcgaagattccgtgcctgatgaaaaggtaaaaagaatacgt
agtaggaagaggcccattgattttagttaccataagtgggcgcatctgggggttcccatg
cttatctctgctggtgatgacacaaagctctttgcctattctgccaaggaattcaccaag
ttctctccacatgatatctgccctgcacctcagagggtgcctattcaattggttcttaat
actgtattcaaccagaactctttgcttctggttcaaggatctaactggttagatattctc
tgtcttcgaatgaaaagtggaaccatgcaagatgctagtcctggcccatctagagaccat
gcaaatacagatctgcttgctcggattaaaactaaagcatctaggaagatcatatgcagc
acaatctctaattcgggaacactacttgcttactctgaccatgttaaacccaatcttttt
gagttgaaaaagcttaatggaaaagcttcatggtccgttaacaaaaggcaacttcctcag
aaattaccatttgcacattccttgatttttagttctgataatgcacgactgatgatagca
gggcatgatcgaagaatatatgttgtggatgtgggaagctcagagttggttcataccttt
acacctcggcatgagggagatgatgaggaattacccccaagtgaacctcccattacaaaa
atgttttccagtggcgatggacagtggctagctgctgtcaattgctttggagatgtgtac
atatttaatctagagacacaaaggcaacattggtttatagctagattggatggtgcctct
gttacagctggtggctttcctcctcaaaataacaatgtgcttgtagtcacaacctcctta
aaccaggtctatgcatttgatgtggaggccaaacaattgggagaatggtctatgcggcat
acatttgttctgcccaaaagataccaagaatttccaggggaggttattgggctctcattc
ttgcctcgatcaagtccaccttctgttattatttacagtgccagggcgatgtgcttgatc
aactttggtatgccagtggatcgagaggaggaaaacgacctggtaaacggtcaacattct
ccattgaagaagttgcaaaacactcttatcaatgggcgattgaaacgcagaagagcagca
aaagaagctgagacagttgcagcaatctcatgctctggccatggaagagtgttcttagat
ggcttgattcttgatggaaaacaaaacccagtttgtgaatgcagcagttgctatggaggt
cctgattgctcccagttctttccttcttgttctgtaaatgctgatggtggggatccattg
ttcctggagcccttctggatgcagaatgccgccagcagtgctgtcgttgtagcaggatgg
catcggatgagctatacatacgatgatcattctgccatctcacaagagcttgaaagacta
atccgcaagctccatgctactgtagggaatgctgtaacagaaggaagatatattattttt
ggtgctggctcaacccaactccttaatgctgcagttaattctttatctcctgataactcc
tcatcccctgccagagttgtagcttcaatcccattttacccagtttataaattacagacg
gacctttttcaatctgtgaatttcaggtttcaaggagacgcatcattatggagaaacaac
tcagatacaagtacagagatgatagagtttgtgacttcaccaaacaatcctgatggacag
ctgaaaaaggcagttcttgaaggctctaatgtgagagcaatctatgatcatgcttacttt
tggccacatttcacagcaattccagctccagcagatggagatatgatgctatttacactt
tccaagctcaccggtcatgctggatccagatttgggtgggcagtgataaaggatgagatt
atctatcaaagaatgctaacatatttgacatttaatacaatgggagtttctcgagaaagt
cagttacgagctctgaagctcctgaaagtagtccttcaaggaggaggaaatgctatattt
gaattcggatacgagactatgaggaaacgttgggaaaggttgagcaacaccatatcaatg
tcaaaacgcttctcgctccagaagatatcgccccagtactgcaactttttccagggactc
agggaagcttcaccagcttatggttgggtgaagtgtgagagacaggaagacaaagactgt
tttgcagtccttcaggcaggcaatattactagtcgtcgaggtagcctgtttggtgtcgga
gatcagtatgtgcgtctcagtctcattagacgccaagatgactttgatttattgattcac
aggctaactcagctagtctccaaggaagatggccccagaagcagcatttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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