KEGG R.denitrificans: RD1

Roseobacter denitrificans: RD1_0101

Entry

RD1_0101 CDS R.denitrificans

Gene name dxs

Definition 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)

Orthology K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]

Pathway rde00900 Terpenoid backbone biosynthesis
rde01100 Metabolic pathways

Class Metabolism; Biosynthesis of Secondary Metabolites; Terpenoid
backbone biosynthesis [PATH:rde00900]

SSDB

Motif Pfam: Transket_pyr Transketolase_C Transketolase_N TPP_enzyme_C
E1_dh
PROSITE: TPP_ENZYMES TRANSKETOLASE_2 TRANSKETOLASE_1

Other DBs NCBI-GI: 110677515
NCBI-GeneID: 4198115
RoseoBase: RD1_0101
UniProt: Q16DV7

Position complement(101045..102982)

AA seq 645 aa
MTDTKTPTLDRVAGPADLRSMSDTELRNVADELRAEVVEAVSQTGGHLGSSLGVVELSVA
IHAVFDTPRDKLVWDVGHQCYPHKILTGRRKQMPTLRQGGGISGFTKRSESEYDPFGAAH
SSTSISAALGFTISRDMGQPTGDAVAVIGDGSISAGMAYEAMNNAGHEGRRMFVILNDNE
MSIAPPVGAMSSYLSSLSELSRAGPFGGLVAIAEGMEQLAPKPVRDGARRARELVTGLEN
RGTFFEELGFDYIGPIDGHDMAQLLSVLRGAKARATGPVLIHCCTVKGKGYAPAEGSADK
YHGVSKFDVGTGVQAKAKANAPSYTAVFGDALTTLAEEDPSVVAVTAAMPSGTGVDRMAK
RFPNRVFDVGIAEQHGVTFAAAMAATGLKPFCAIYSTFLQRGYDQIVHDVALQGLPVRFA
IDRAGLVGADGATHAGSFDIGYLGALPGMVVMAAADEAELVHMVATAGAHNDGPIAFRYP
RGNGTGVPLPETGRVLEIGKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIA
DARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLP
DRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGRDLKVVTLNAKRR

NT seq 1938 nt +upstreamnt +downstreamnt
atgaccgatacaaaaaccccaacactggaccgtgtcgccggacctgccgatttacgcagt
atgagcgataccgagttgcgcaacgtcgccgatgaactgcgcgccgaagttgtcgaagcc
gtgagccagaccggcgggcatctcgggtccagccttggcgttgtggaactcagcgttgcg
atccacgcggtgttcgacacgccgcgcgacaaactggtgtgggatgtggggcatcagtgc
tacccgcataaaatcctgacgggtcggcgcaagcagatgcccaccctgcggcagggcggg
gggatcagcggattcaccaaacgctccgaatccgaatatgatccctttggcgcggcgcat
tccagcacgtcgatttccgccgcactggggtttaccatcagccgggacatgggccagccg
accggtgacgcagtggccgtgatcggggatggctcgatcagtgcaggcatggcctatgag
gcgatgaacaacgcaggccatgaggggcggcgcatgttcgtgatcctgaatgacaatgaa
atgagcatcgcgccccctgtcggtgcaatgtcgtcctacctttccagcctgtccgagctg
tcgcgcgccggacccttcgggggtcttgtggccattgctgaaggcatggagcagcttgcc
ccgaaaccggtgcgggacggggcgcggcgggcgcgcgaactggttaccggacttgaaaat
cgcggtacgttctttgaagagctcggctttgactacatcgggccgattgatggccatgac
atggcccagttgctcagcgttctgcgcggggccaaggcgcgcgcaaccggcccggttctg
atccactgctgtactgtcaagggcaagggctatgcgcccgccgaagggtcagcagacaaa
taccacggggtcagcaaattcgacgtgggcaccggggtgcaggccaaggccaaggcgaat
gcgccgtcctacaccgccgtgttcggtgacgcgctgaccacgctggccgaagaggatccg
tccgtcgtcgccgtgacggcggcgatgccctcgggcaccggggtcgaccggatggccaaa
cggttcccgaaccgggtgttcgacgtcggcattgccgagcaacacggtgttacatttgcc
gccgcgatggcggcgacggggctgaaaccgttctgtgcaatttactcgacctttttgcag
cgtggctatgatcagatcgtgcatgatgtggccttgcagggcctgccggtgcgctttgcc
attgaccgggcgggtcttgtcggtgcagacggggcaacccatgcggggtctttcgacatc
gggtatctcggtgccttgccggggatggtggtgatggccgccgcagatgaggcagagctt
gtgcatatggtcgccacggcgggcgcgcacaacgatggcccgattgcctttcgctatccg
cgcggcaatgggaccggcgtgccgctgcctgaaacgggccgtgttcttgaaatcggcaaa
gggcgcatgatccgcgaaggcgatggcgaggttgcgatcctgtcgcttggcacattgctg
tcggattgcgaggcggcggcccgcattcttgaggcagaagggatcaatgccaccatcgcg
gatgcgcgttttgccaagccgctggatatggcgttgatcgcgaaccttgttcaaacgcac
aaggcgcttatcactgtggaacagggcgcgatggccgggtttggcgcaatggtgttgcaa
tccatggctgccgaaggcctgctggatctgggctgcaaggtgcgcaccatgtgtctgccg
gaccgcttcattgaccaggccgccccggcggagatgtaccgtgatgccggtcttgatacg
atgggcatcgttgaacaggtcacccgcgttctggggcgggacctgaaggtcgtcaccctg
aacgcaaagcggcgttag

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   ROSEOBASE-RDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (5)   
   PROSITE (3)   
All databases (21)

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