KEGG R.denitrificans: RD1

Roseobacter denitrificans: RD1_1246

Entry

RD1_1246 CDS R.denitrificans

Gene name lysK

Definition lysyl-tRNA synthetase (EC:6.1.1.6)

Orthology K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]

Pathway rde00970 Aminoacyl-tRNA biosynthesis

Class Genetic Information Processing; Translation; Aminoacyl-tRNA
biosynthesis [PATH:rde00970]

SSDB

Motif Pfam: tRNA-synt_1f tRNA-synt_1b tRNA-synt_1g tRNA-synt_1c
tRNA-synt_1e tRNA-synt_1
PROSITE: AA_TRNA_LIGASE_I

Other DBs NCBI-GI: 110678572
NCBI-GeneID: 4197453
RoseoBase: RD1_1246
UniProt: Q16AV0

Position 1208693..1210276

AA seq 527 aa
MSDTRTAAMTSKAWPFEEARRVLKRYEKNPPEKGYVLFETGYGPSGLPHIGTFGEVARTS
MVMRAFQEISDIPTRLICFSDDLDGMRKVPGNVPNPDALTEHLQRPLTSVPDPFGTHASF
GAHNNAMLRRFLDTFGFEYEFISATEFYNTGQFDEILLRAAAKYDEIMAVMLKSLREERR
QTYSIFLPIHPESGRVMYVPMKEVNAQAGTITFDSEDGEEMTLPVTGGAVKLQWKPDFGA
RWAALGVDFEMYGKDHSTNTPIYDKICRILGQRPPEHFTYELFLDENGQKISKSSGNGVS
IDEWLTYASTESLSYFMYQKPKTAKRMYFDVIPKAVDEYHQQLRAYAGQDTAQRLNNPVW
HIHGGDVPASNMLVPFSMLLNLASVSSAEDKSQLWGFIQRYAPESNPENNPDMDAAADFA
VRYFNDFVKPKKVYRAASDLEREALEDLRDQLKAYDGPVDDEALQSIVYACGRERFDPLR
GWFTALYEVLLGASQGPRFGGFIALYGVQETVALIDAALAGELLSDD

NT seq 1584 nt +upstreamnt +downstreamnt
atgtccgacacccgtaccgccgcgatgacgagcaaagcatggccctttgaagaggcgcgc
cgcgtgctcaagcgatacgaaaagaacccgccggagaaaggctatgtcctgttcgaaacg
ggctatggcccatcgggcctgccgcatatcggcacctttggcgaggtggcgcgcacctcg
atggtgatgcgggcgtttcaggaaatatcggatattccgaccaggctgatctgcttttcc
gatgatctggacgggatgcgcaaagtgccgggcaatgtgcccaatcccgacgcgctgacc
gagcatttgcagcgcccgctgaccagcgtgccggacccgttcgggacgcatgccagtttt
ggcgcgcataacaacgccatgctgcgccggtttctggacactttcgggttcgagtatgaa
ttcatttccgcgaccgagttctataacaccgggcagtttgatgagattctgctgcgcgcc
gccgcgaaatacgatgaaatcatggctgtgatgctgaaatcgctgcgcgaggagcggcgc
cagacctattcgattttcctgccgatccatcccgaaagcgggcgcgtgatgtatgtcccg
atgaaagaggtcaacgcgcaggcgggcaccatcacctttgacagcgaagatggtgaagag
atgacgctgccggtcaccggtggtgccgtcaaattgcagtggaagccagactttggcgcg
cgttgggcggccctcggcgtggatttcgagatgtatggcaaggaccattccaccaatacg
ccgatctatgacaagatctgccgtatcctgggccagcgcccgccggagcatttcacctat
gagttgtttctggatgaaaacgggcaaaaaatttccaaatcctccggcaatggggtcagc
attgacgaatggctgacctatgccagcaccgagagcctgtcgtatttcatgtaccaaaag
ccgaagacggccaagcgcatgtatttcgacgtgatcccgaaggctgtggacgaataccat
cagcaattgcgcgcctatgccggtcaggacacagcgcagcggttgaacaacccggtgtgg
catatccatgggggcgatgtgccggcgtcgaatatgctggtgccgttttccatgctgctc
aatctggcgagcgtgtcctccgctgaggataaatcgcagctttgggggttcatccagcgc
tatgcgcctgaaagcaatccggaaaacaatccggatatggacgcagcggcagatttcgcc
gtgcggtatttcaacgatttcgtgaagccgaaaaaggtctatcgcgcggccagtgatctg
gagcgtgaggcgctggaggacctgcgcgaccagctcaaggcctatgacgggccggtggat
gatgaggcgttgcagtccatcgtctatgcctgcgggcgcgagcggtttgatcccttgcgc
ggatggttcacggccctttatgaggtgctgctgggcgcgtcgcaggggccgcgttttggt
ggcttcatcgccctttacggggtgcaggaaacggtcgctctgattgatgccgcgcttgcc
ggtgaattgctgagcgacgactga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   ROSEOBASE-RDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (19)

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