KEGG T00376: RD1

Roseobacter denitrificans: RD1_1817

Entry

RD1_1817 CDS T00376

Gene name

dnlI

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rde Roseobacter denitrificans

Pathway

rde03410	Base excision repair
rde03420	Nucleotide excision repair
rde03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rde03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rde03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rde03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

RoseoBase:

UniProt:

Position

complement(1741635..1743233)

AA seq 532 aa
MKEFAALFNAIDQSTKTTVKTAALASYFAKAPKEDRLWTIALFSGRRPKRAVTTSKLREW
AAETADIPLWLFEESYPIVGDLAETIALVLPDTTSTNDTPLSDWITALRALSEADDAQRK
AFVRDAWATLGGTERFVFNKLITGGFRVGISQKLMTRALSKATGKPETELAHRLMGNWHP
DDTTWDALIEADDPMADASRPYPFYLSYGLEGAVEDLGSPSDWVAEWKWDGIRGQLILRD
GQYFVWSRGEELMTDRFPELAQAVDFFPAGTVLDGELLVWEAGADAPSSFNALQKRIGRK
TVPKKLLAEAPVVLHAYDVLEWQGVDIRQRPFAERRAILQDACTALPATAPVKQSPQLSF
QDWDSLAQHRGAAREAQAEGVMLKRADSPYLVGRKKGDWWKWKLDPLTIDAVMIYAQAGH
GRRANLFTDFTFAVRHGNDLVPFTKAYSGLTDAEFRAITAWVRKNTLQRFGPVRQVTPHH
VFEIAFEGIQASPRHKSGVALRFPRMARWRQDKPLQEANTLDDLKQMLELYG

NT seq 1599 nt +upstreamnt +downstreamnt
gtgaaagaattcgcagcgcttttcaatgcgatcgaccagagcaccaagaccaccgtcaaa
acggcggcacttgcgtcctattttgccaaggccccgaaagaggaccggctgtggacaatc
gcgctcttttccggtcgcaggccaaaacgggcggtcacaacctcaaagttgcgcgaatgg
gcagcggaaacggccgacattcccttgtggctcttcgaggaaagctatccgatcgtcggc
gatctggccgaaacgatcgccttggttctacccgacaccaccagcacgaacgacacaccc
ctgtccgattggatcaccgccttgcgcgccttgtcagaggcggacgatgcgcaacgcaaa
gccttcgtgcgggacgcatgggcaaccctcggcggcacggagcgttttgtgttcaacaag
ttgatcaccggcggttttcgcgttgggatcagtcaaaagctgatgacccgcgcgttgtca
aaggccacgggcaagcccgaaaccgaactggcgcatcgcctgatgggcaactggcacccg
gatgacaccacatgggacgccctgatcgaggcggacgacccgatggcggatgcctcgcgc
ccctatccgttctacttgtcctacgggctggaaggggcggttgaagacctcggcagccca
tcagactgggttgcggaatggaaatgggacggcattcgcggccagttgatcctgcgcgac
gggcaatatttcgtgtggtcgcgcggcgaggagttgatgacggaccgctttccggaactg
gcgcaggcggttgactttttcccggcaggcaccgtgctggatggcgaattgctggtctgg
gaggcgggtgccgacgcgccgtccagtttcaatgcgctgcaaaaacggatcgggcgcaaa
acggtgcccaaaaagctgctcgcagaagcacctgtcgtgctgcacgcctatgatgtgctg
gaatggcagggcgtggatatccgccaacgcccctttgcggaacggcgcgcgatcctgcag
gacgcctgcacggccctgccggcaacggcgccggtaaaacaatccccccagctttcgttt
caagactgggacagtctcgcgcaacatcgcggtgctgcgcgcgaggcacaggccgaaggg
gtgatgctgaaacgcgccgacagcccctatctggtgggacgcaaaaagggggattggtgg
aaatggaaacttgatccactgacgattgatgccgtgatgatctatgcgcaggccgggcat
gggcggcgcgcgaatctcttcaccgatttcacctttgcggtgcgccatggcaatgacctc
gtgccattcaccaaagcctattccggcctgaccgacgccgaattccgcgccattaccgct
tgggtgcgtaaaaacacgctgcagcgttttggcccggtgcgccaagtgacgccgcaccat
gtctttgaaatcgcatttgaaggcattcaggccagcccacgccataaatccggcgtggcg
ctgcgctttccccgcatggcgcggtggcgacaggataaacccctgcaagaggccaatacg
ctggatgacctcaagcagatgcttgaattatatggctaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   ROSEOBASE-RDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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