KEGG T00376: RD1

Roseobacter denitrificans: RD1_2865

Entry

RD1_2865 CDS T00376

Gene name

rafA

Definition

alpha-galactosidase (EC:3.2.1.22)

Orthology

K07407

alpha-galactosidase [EC:3.2.1.22]

Organism

rde Roseobacter denitrificans

Pathway

rde00052	Galactose metabolism
rde00561	Glycerolipid metabolism
rde00600	Sphingolipid metabolism

Class

Metabolism; Carbohydrate metabolism; Galactose metabolism [PATH:rde00052]
Metabolism; Lipid metabolism; Glycerolipid metabolism [PATH:rde00561]
Metabolism; Lipid metabolism; Sphingolipid metabolism [PATH:rde00600]

SSDB

Motif

Pfam:

Melibiase DUF187

Other DBs

NCBI-GI:

NCBI-GeneID:

RoseoBase:

UniProt:

Position

2734352..2736436

AA seq 694 aa
MTECWRLDDARQTLALASTNGRCPQVIYWGAPLPPGEDLCALSDVSTLDVTGGMLDQNPD
LSLCPEAARSFPGQPGLIVRDRDGTPFLPKFRLDHVTQSELTLTVTCVDAPHGLTYVAEF
TLDADTHVIAMTARLSADRPLHLDWLAAPVLPAPQHSEAMIDFAGRWCGEFQMNRTPWSP
GIRMRENRTGRTGHEHFPGLIVPCKGARNTAGEAYAFHYGWSGGHRMIAEELPDGRRQIQ
FGHAAGTHMTPATEFQTAPIYAVYSCEGLNGCAVPFQRHVRDRIVAWTDTGRPRPVHYNC
WEAVYFNHDLAVLKDIASRAAALGAERFVLDDGWFGQRDDDTSSLGDWAVDTRKYPEGLD
PLIAHVRAQGMGFGIWFEPEMINPDSDTYRAHPDWALGPADQILGRQQKLLNMALPQVRD
YLYDRIAALLTAHPIDYIKWDHNRVLPMPDAAQTDGSYALIDRLRADFPQVEIESCASGG
GRIDFGILQRSQRVWLSDSNDALERLRIQHNAALFLPACVTGSHVGPRRCHTSGRVLDIA
LRAWVAAQRHMGFEMDPRELTEREAEVLRDVTGWWKDNRDWMEHADILRLDSSDPAVIAE
QQLARDGRQFVAFVGKSGTSDQIAPRPLRLTRLDPDARYAVSLRNRADAPHLSRGSLALK
DGPVTLSGAALMQHGVTLPWSFPDFIWVLEGRRL

NT seq 2085 nt +upstreamnt +downstreamnt
gtgacagagtgctggcggctggatgacgcgcgccagacgctggcgcttgcctcgacaaat
gggcggtgcccgcaggtcatttactggggcgcgcccctgccaccgggcgaagacctgtgc
gcgctcagcgatgtcagcacgctcgatgtgacgggtggcatgctggatcagaacccggat
ctgtcgctctgccctgaggctgcacgcagcttcccgggccagcccggtctcattgtgcgt
gaccgggacggcacgcctttcctgccgaaattccggctggatcacgtgacacagtccgag
ctgaccttgaccgttacctgcgtcgatgcgccccacgggctgacctatgtggccgaattc
acgctggatgccgacacccatgtgattgccatgacagcacggttatctgctgaccgcccg
ctgcatctggactggctggcggcccccgtcctgcccgccccgcagcacagcgaggcgatg
attgatttcgcaggccgctggtgtggtgagtttcagatgaaccgcacgccatggtcgccg
ggcatccgcatgcgcgaaaaccgcacggggcgcacgggccacgaacatttccccggtctg
atcgtgccctgcaagggggcgcgcaataccgcaggcgaggcctatgcctttcactatggc
tggtccggcgggcatcggatgatcgccgaagaactgcccgatgggcgccgtcaaattcaa
ttcgggcacgccgcaggcacgcacatgacgccagccaccgagtttcagaccgcgcctatc
tatgcggtctattcctgcgagggcctgaacggctgcgccgtcccgtttcaacgccatgtg
cgcgaccggatcgtcgcgtggaccgacacgggccgtccgcgcccggtgcattacaactgc
tgggaagcggtctatttcaaccacgacctcgccgtgctcaaggatatcgccagccgcgcc
gccgcccttggtgcggagcgtttcgtgctggatgacggatggttcgggcagcgcgacgat
gacacctcttcgctgggcgattgggcggtggatacacgcaaataccccgaaggcctcgac
ccgctgatcgcgcatgtgcgggcacagggcatgggtttcggcatctggtttgaaccggaa
atgatcaacccggactcagacacctaccgcgcacatcccgactgggcgctggggcctgcg
gaccagatccttggacgccagcaaaaactgctgaacatggccctgccacaggtgcgcgat
tatctctatgaccgcatcgccgcgctgctgaccgcccatccgatcgactacatcaaatgg
gaccacaaccgcgtcctgcccatgcccgatgcggcgcagaccgacgggagctatgcgttg
atcgaccggctgcgcgccgatttcccgcaggtggaaatcgaaagctgcgcctcgggcggt
gggcggattgatttcggcatcctgcagcgcagccaaagggtctggttgtctgacagcaac
gacgcgttggaacgcctcagaattcagcacaacgccgcgctgttcctgcccgcctgcgtc
acgggcagccatgtgggcccgcgcagatgccatacctcgggccgtgtcctcgacattgca
ttgcgcgcatgggtcgccgcacagcgccacatgggtttcgagatggacccgcgcgaattg
accgagcgcgaggcggaagtgctgcgcgatgtcaccgggtggtggaaagacaaccgcgac
tggatggaacacgcggacatcctgcggctggacagttcggaccctgcggtcatcgcagaa
caacaactggcgcgcgacgggcgccagttcgtagcctttgtgggcaaatccggcacctcg
gatcagatcgccccacgtcccttgcgccttacgcggctggaccccgatgcgcgctacgcg
gtcagcctgcgcaaccgcgccgatgccccgcatctgtcgcgcgggtctttggcgctcaag
gacggccctgtgacactatccggtgcggcgctgatgcagcatggcgtgacactgccatgg
agctttcccgatttcatctgggtgctggagggccgccgcctgtga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (20)   
   KEGG COMPOUND (20)   
Chemical reaction (13)   
   KEGG ENZYME (1)   
   KEGG REACTION (12)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   ROSEOBASE-RDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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