KEGG T03842: XU06

Rhodococcus erythropolis BG43: XU06_18375

Entry

XU06_18375        CDS       T03842

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

reb Rhodococcus erythropolis BG43

Pathway

reb03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:reb00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XU06_18375
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:reb03021]
    XU06_18375
   03019 Messenger RNA biogenesis [BR:reb03019]
    XU06_18375
Transcription machinery [BR:reb03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     XU06_18375
Messenger RNA biogenesis [BR:reb03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     XU06_18375

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 Spore_III_AA NACHT

Other DBs

NCBI-ProteinID:

AKD98442

Position

complement(4024906..4027035)

AA seq 709 aa
MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG
ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA
AETAPAAESAPAEAAPARTESAEDSDQSAPRRGRQRRGAARRAGSPDQGELSIEQDTPSA
KSDADTSKAADTSKVAETAKAEAPAERPARTEGKSDADQAPAEQGNERPRRERNRDNQGQ
RDNQGQRENQGNRGNQDRQDRQDRGNQNNAGQNNAGPRTDNRNNGPDDDEEGGRGRRGRR
FRERRGRGRDRGEGGAPNDSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVY
VSMNLIRKNGLRRGDAITGAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFN
KLTPLYPNQRLRLETEQHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVAT
NNPECYLMVILVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMG
KDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIA
TAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEA
AVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGAIDD

NT seq 2130 nt +upstreamnt +downstreamnt
gtgaccgatacggacctcatcgccacttctgcacccgccgggtcggaatcaggcgacaat
tctcaggcgtcatcttcagcatcgaacggtgcggtggcgacctccacgaagcgtgccgag
acgcgtcgtggtgccggactctccggcatggtgctcaccgaactccgcactcttgcgggt
gaactgggcatcaaaggcacttccggcatgcgcaagggcgacctgatcgcagccatcaag
gagcgccagggcggcagcgcaaaggctgcacccgcacagagcgaactcactctcgacgac
gcacccgttgcgcgcactcgtgccaagagcacccgcgccgcacgcaccgaaacccccgca
gccgaaacggctcccgcggcagaatccgctcctgccgaggcagcgcctgcgcgtaccgaa
tccgccgaggattccgatcagagcgcaccccgtcgtggacgtcagcgtcgcggcgccgct
cgtcgtgcaggttcacccgaccagggtgaactgagcatcgagcaggacactccttcggca
aagtccgatgcggacacctcgaaggccgccgatacctcgaaggtcgccgagaccgccaag
gctgaggctccggccgagcgtcctgcgcgcaccgagggcaagtccgacgctgatcaggct
cccgccgagcagggcaacgagcgtccccgccgcgagcgcaaccgggacaatcagggccag
cgagacaaccagggccagcgcgagaaccagggcaaccggggcaaccaggatcgccaggac
cgtcaggatcgcggcaatcagaacaacgccggccagaacaacgccggtccgcgtacggac
aaccgcaacaacggaccggacgacgacgaagagggtggacgcggacgccgcggacgccgt
ttccgcgagcgccgtggccgtggtcgcgaccgcggtgagggtggcgcacccaacgattcg
cgtgagaccgaaatccgcgaggacgacgtccttcagccggtcgccggcatcctcgacgtg
ctcgacaattacgccttcgtgcgtacgtccgggtacctcgccggtcccaacgacgtctac
gtctccatgaacctgatccgcaagaacggccttcgccgtggcgacgccatcaccggtgcc
gtccgcgtctcgcgtgacggtgagcagggcagccagcgtcagaagttcaacccgctggtc
cgcatcgacacggtcaacggcggcgacgtcgaggccgcgaagaagcgccccgagttcaac
aagctcacgccgctgtacccgaaccagcgtctgcgcctcgagaccgagcagcacattctc
accacgcgtgtcatcgacctggtgatgcccatcggtaagggccagcgcgccctcatcgtg
agcccgcccaaggccggtaagaccagcgtgttgcaggcgatcgcgaatgccgtcgccacc
aacaatcctgagtgctacctgatggtcatcctcgtggacgagcgtcccgaggaagtgacc
gacatgcagcgcagcgtgaagggtgaggtcatttcctccaccttcgaccgcccgccggga
gatcacaccgcagttgccgagctggcaatcgagcgtgcgaagcgcctggtcgagatgggt
aaggacgtcgtcgtactgctcgactccatcacgcgtctgggtcgtgcgtacaacaactcc
tcgcctgcgtccggacgcatcctctccggtggtgtcgactcgacggcgctctacccgccg
aagcgtttcctcggcgctgcccgcaacatcgagaacggcggatcgctcaccatcatcgcc
accgcgatggtcgagaccggatccaccggcgacacggtgatcttcgaagagttcaagggc
accggcaacgccgagctcaagctcgatcgcaagatcgccgaacgccgcgtgttcccggcc
gtggacgtcaacccgtccagcacgcgtaaggacgagctgctcctgagcccggacgaagct
gctgtgctgcacaagctccgccgcgtcctgtccggactggactcgcatcaggccatcgat
ctgctgatcgatcgactgaagaagagcaagaacaacctcgagttcctgatgcaggtctcc
aagaccgcaccgggtgcgatcgacgactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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