KEGG   Roseibacterium elongatum: roselon_00930
Entry
roselon_00930     CDS       T03060                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
red  Roseibacterium elongatum
Pathway
red03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:red00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    roselon_00930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:red03019]
    roselon_00930
   03016 Transfer RNA biogenesis [BR:red03016]
    roselon_00930
Enzymes [BR:red01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     roselon_00930
Messenger RNA biogenesis [BR:red03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     roselon_00930
Transfer RNA biogenesis [BR:red03016]
 Prokaryotic type
  tRNA degradation factors
   roselon_00930
SSDB
Motif
Pfam: RNB CSD2 S1 MarR_2 HTH_Crp_2
Other DBs
NCBI-ProteinID: AHM03330
UniProt: W8SLB3
Position
895221..897476
AA seq 751 aa
MSTLPTKDQILAWISDNPASTSKRDIARAFGIKGADRIDLKRMLKELEDEGHLEKRKKTY
RDPDKLPPVAVLQVTGPDDLGDMFCRPLEWQGEGAEPRILFSARATDPAIGAGDRILARL
QEVQGEDHHYIARLIRRIGTNPKKILGIYRKGAEGGRIVPISKGADKEWQVRASDTHGAR
DGELVEGEQAGPKGRMGLPRARITDRLGDPGAPKSVSLIAIHEHGIPDAFPDAVIAEADS
KKPAGLSGREDLRDMDLVTIDPADARDHDDACYAHADDDPRNRGGHVIWVAIADVAHYVA
AGSALDREAKKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMVIDAEGNKIG
HRFVRGLMRSTASLNYQEVQAAEDGAPNDKTAPLVAPVIAPLYAAYRALRDARNRRQPLD
LDLPERRIELSEDGHVTSVAYKDRLDAHRMIEEFMVLANVAAAETLIEKRTPLLFRVHEE
PKPEKIEALRETAEASGFSLAKGQVLQTRQLNALLSQAEGTEFDELINMTTLRSMTQAYY
SPENFGHFGLALKTYAHFTSPIRRYSDLVVHRALISAHGWGRDGLSPDEVERLDETAKHI
SDTERRSMTAERDTNDRYLAAFLSDRVGATFTGRISGIQRFGAFVKLDETGADGLLPMRA
IGHEYFHFDADTQTLMGADSGLTIGIGDRVTVKLAEAVPVTGGLTLDLVELEGQSLPRRP
QRGKRGAPPRRKAGQAARKKVKLRKKAARRS
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgagcacgcttcccaccaaggaccagatcctcgcctggatctcggacaaccccgccagc
acctcgaaacgcgatatcgcccgcgccttcgggatcaagggggccgaccggatcgacctc
aagcgcatgctcaaggaactcgaggacgagggccatctcgagaagcgcaagaagacctat
cgcgaccccgacaagctgccgcccgtggcggtgttgcaggtcaccgggccggacgatctg
ggcgacatgttctgccgtccgctggaatggcagggcgaaggggccgagccgcgcatcctg
ttttccgcccgcgccaccgacccggccatcggcgcgggcgaccgcatccttgcccgcctg
caagaggtgcagggcgaggatcaccactatatcgcccgcctgatccggcgcatcgggacg
aacccgaaaaagatcctgggcatctaccgcaagggggccgagggcgggcgcatcgtgccc
atctcgaagggggccgacaaggaatggcaggtgcgcgccagcgacacccatggcgcgcgc
gacggggaactcgtcgaaggcgaacaggccggccccaaggggcgcatgggtctgccgcgc
gcgcggatcaccgaccgtctgggcgaccccggcgcgccgaaatccgtcagcctgatcgcg
atccacgaacatggcatccccgatgcctttcccgatgccgtcatcgccgaggccgacagc
aaaaagcccgcgggcctgtcggggcgcgaagacctgcgcgacatggaccttgtcaccatc
gacccggcggatgcgcgcgaccatgacgacgcctgctatgcccatgccgatgacgacccc
aggaaccggggcggccatgtcatctgggtggccatcgccgatgtcgcccattacgtggcg
gcgggcagcgcgctggaccgcgaggcgaagaagcgcggcaattccacctattttcccgac
cgcgtcgtgccgatgctgcccgatcgcctgtcaggggatctttgctcgctgcacgaaggc
gttccgcgcgcctgtatcgccgtgcgcatggtcatcgacgccgaggggaacaagatcggc
caccgcttcgtgcgggggctgatgcgctcgaccgcgtcgctcaactaccaggaggttcag
gccgccgaggatggcgcgcccaacgacaagaccgcacccctggtcgcgccggtcatcgcg
ccgctttacgccgcctaccgcgcgctgcgcgatgcacgcaaccgccgccagccgctggac
ctcgacctgccggagcggcggatcgaactgtccgaggacgggcatgtcacctcggtcgcc
tacaaggaccggctcgatgcccatcgcatgatcgaggaattcatggtgctggccaatgtc
gccgccgccgaaaccctgatcgagaaacgcacacccctgctgttccgtgtccacgaggaa
cccaaacccgaaaagatcgaggccctgcgcgaaaccgccgaagcctcggggttttcgctg
gccaaggggcaggtcctgcaaacccgccagttgaacgccctgctgtcccaggccgagggg
accgagttcgacgagctgatcaacatgaccacgctgcggtcgatgacgcaggcctattac
agccccgagaatttcggacatttcgggctggcgctgaagacttacgcgcatttcacctcg
cccatccggcgctattccgaccttgtggtgcaccgcgcgctgatctcggcccatggctgg
gggcgcgacgggctcagccccgacgaggtcgagcggctggacgagaccgccaagcatatc
tctgacacggaacgccgctcgatgacggcggaacgcgacaccaacgatcgctaccttgcc
gccttcctgtcggaccgggtcggcgcgaccttcacggggcggatctcgggcattcagcgc
tttggcgcgttcgtgaagctggacgaaaccggggcggacgggttgctgcccatgcgcgcc
atcgggcacgagtatttccatttcgacgccgatacacagacgctgatgggggcggattcg
ggcctgaccatcggcatcggcgaccgtgtcaccgtcaaactggccgaggccgtgccggtg
accggcggcctgacgctggatctggtcgagctggagggccagagcctgccgcgccgtccg
caaaggggcaagcgcggcgcgcccccgcggcgcaaggccggccaggccgcgcgcaagaag
gtcaagctgcgcaagaaggccgcgcggcgatcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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