LOCUS NC_000964 4215606 bp DNA circular BCT 20-AUG-2012
DEFINITION Bacillus subtilis subsp. subtilis str. 168 chromosome, complete
genome.
ACCESSION NC_000964
VERSION NC_000964.3 GI:255767013
DBLINK Project: 57675
BioProject: PRJNA57675
KEYWORDS complete genome.
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1 (bases 1 to 4215606)
AUTHORS Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
Danchin,A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155 (PT 6), 1758-1775 (2009)
PUBMED 19383706
REFERENCE 2 (bases 1 to 4215606)
AUTHORS Eichenberger,P., Fujita,M., Jensen,S.T., Conlon,E.M., Rudner,D.Z.,
Wang,S.T., Ferguson,C., Haga,K., Sato,T., Liu,J.S. and Losick,R.
TITLE The program of gene transcription for a single differentiating cell
type during sporulation in Bacillus subtilis
JOURNAL PLoS Biol. 2 (10), E328 (2004)
PUBMED 15383836
REFERENCE 3 (bases 1 to 4215606)
AUTHORS Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C.,
Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V.,
Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings,N.J.,
Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D.,
Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E.,
Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A.,
Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J.,
Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R.,
Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F.,
Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y.,
Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P.,
Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A.,
Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H.,
Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P.,
Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M.,
Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M.,
Portetelle,D., Porwollik,S., Prescott,A.M., Presecan,E., Pujic,P.,
Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M.,
Rivolta,C., Rocha,E., Roche,B., Rose,M., Sadaie,Y., Sato,T.,
Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J.,
Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B.,
Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K.,
Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A.,
Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A.,
Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T.,
Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K.,
Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and
Danchin,A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390 (6657), 249-256 (1997)
PUBMED 9384377
REFERENCE 4 (bases 1 to 4215606)
AUTHORS Mizuno,M., Masuda,S., Takemaru,K., Hosono,S., Sato,T., Takeuchi,M.
and Kobayashi,Y.
TITLE Systematic sequencing of the 283 kb 210 degrees-232 degrees region
of the Bacillus subtilis genome containing the skin element and
many sporulation genes
JOURNAL Microbiology (Reading, Engl.) 142 (PT 11), 3103-3111 (1996)
PUBMED 8969508
REFERENCE 5 (bases 1 to 4215606)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 6 (bases 1 to 4215606)
AUTHORS Genoscope -,C.E.A.
CONSRTM Institut Pasteur and Genoscope
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REFERENCE 7 (bases 1 to 4215606)
AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
TITLE Direct Submission
JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur,
Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724
Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45
68 89 48
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AL009126.
On Aug 12, 2009 this sequence version replaced gi:50812173.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage.
The large cluster comprising the i, h and g rDNA regions could not
be properly resolved, we therefore incorporated the original
sequence of rRNAihg in the final assembly.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4215606
/organism="Bacillus subtilis subsp. subtilis str. 168"
/mol_type="genomic DNA"
/strain="168"
/sub_species="subtilis"
/db_xref="taxon:224308"
gene 410..1750
/gene="dnaA"
/locus_tag="BSU00010"
/db_xref="GeneID:939978"
CDS 410..1750
/gene="dnaA"
/locus_tag="BSU00010"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosome replication initiator DnaA"
/protein_id="NP_387882.1"
/db_xref="GI:16077069"
/db_xref="GeneID:939978"
/translation="MENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTIT
APNEFARDWLESRYLHLIADTIYELTGEELSIKFVIPQNQDVEDFMPKPQVKKAVKED
TSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHL
MHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF
LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP
DLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDIN
ADLAAEALKDIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMY
LSREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLADDEQLQQHVKEIKEQLK"
misc_feature 416..1747
/gene="dnaA"
/locus_tag="BSU00010"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:234667"
misc_feature 425..613
/gene="dnaA"
/locus_tag="BSU00010"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature 782..1216
/gene="dnaA"
/locus_tag="BSU00010"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 860..883
/gene="dnaA"
/locus_tag="BSU00010"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(863..886,1049..1051,1148..1150)
/gene="dnaA"
/locus_tag="BSU00010"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1037..1054
/gene="dnaA"
/locus_tag="BSU00010"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 1187..1189
/gene="dnaA"
/locus_tag="BSU00010"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1475..1744
/gene="dnaA"
/locus_tag="BSU00010"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1544..1546,1568..1573,1592..1594,1610..1618,
1643..1657,1664..1666,1673..1678)
/gene="dnaA"
/locus_tag="BSU00010"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1939..3075
/gene="dnaN"
/locus_tag="BSU00020"
/db_xref="GeneID:939970"
CDS 1939..3075
/gene="dnaN"
/locus_tag="BSU00020"
/EC_number="2.7.7.7"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="NP_387883.1"
/db_xref="GI:16077070"
/db_xref="GeneID:939970"
/translation="MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSF
TGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQY
LTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRP
ILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDN
QELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAID
RASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKY
MLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVRTY"
misc_feature 1939..3069
/gene="dnaN"
/locus_tag="BSU00020"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:235541"
misc_feature 1939..3066
/gene="dnaN"
/locus_tag="BSU00020"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(2008..2010,2176..2178,2197..2199,2554..2556)
/gene="dnaN"
/locus_tag="BSU00020"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(2179..2181,2188..2190,2266..2268,2272..2274,
2776..2778,2875..2880)
/gene="dnaN"
/locus_tag="BSU00020"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(2473..2475,2479..2490,2929..2931,3055..3066)
/gene="dnaN"
/locus_tag="BSU00020"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(2473..2475,2479..2484,2701..2703,2809..2811,
2851..2856,2938..2940,3055..3066)
/gene="dnaN"
/locus_tag="BSU00020"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 3206..3421
/gene="yaaA"
/locus_tag="BSU00030"
/db_xref="GeneID:939444"
CDS 3206..3421
/gene="yaaA"
/locus_tag="BSU00030"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="RNA binding protein"
/protein_id="NP_387884.1"
/db_xref="GI:16077071"
/db_xref="GeneID:939444"
/translation="MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDE
PDNRRGRKLYVGDVVEIEGFGSFQVVN"
misc_feature 3215..3391
/gene="yaaA"
/locus_tag="BSU00030"
/note="S4 domain protein YaaA; Region: YaaA_near_RecF;
TIGR02988"
/db_xref="CDD:132033"
gene 3437..4549
/gene="recF"
/locus_tag="BSU00040"
/db_xref="GeneID:939454"
CDS 3437..4549
/gene="recF"
/locus_tag="BSU00040"
/function="16.6: Maintain"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="NP_387885.1"
/db_xref="GI:16077072"
/db_xref="GeneID:939454"
/translation="MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIY
VLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQ
KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGL
EELTLKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNG
RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTI
QGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK"
misc_feature 3437..4546
/gene="recF"
/locus_tag="BSU00040"
/note="Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair]; Region:
RecF; COG1195"
/db_xref="CDD:224116"
misc_feature 3443..>3931
/gene="recF"
/locus_tag="BSU00040"
/note="ATP-binding cassette domain of RecF; Region:
ABC_RecF; cd03242"
/db_xref="CDD:213209"
misc_feature 3524..3547
/gene="recF"
/locus_tag="BSU00040"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213209"
misc_feature order(3533..3538,3542..3550,3737..3739)
/gene="recF"
/locus_tag="BSU00040"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213209"
misc_feature 3728..3739
/gene="recF"
/locus_tag="BSU00040"
/note="Q-loop/lid; other site"
/db_xref="CDD:213209"
misc_feature <4205..4540
/gene="recF"
/locus_tag="BSU00040"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 4283..4312
/gene="recF"
/locus_tag="BSU00040"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 4370..4387
/gene="recF"
/locus_tag="BSU00040"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 4394..4405
/gene="recF"
/locus_tag="BSU00040"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 4460..4480
/gene="recF"
/locus_tag="BSU00040"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 4567..4812
/gene="yaaB"
/locus_tag="BSU00050"
/db_xref="GeneID:939466"
CDS 4567..4812
/gene="yaaB"
/locus_tag="BSU00050"
/function="18: Unknown function"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387886.2"
/db_xref="GI:255767014"
/db_xref="GeneID:939466"
/translation="MYIHLGDDFVVSTRDIVGIFDFKANMSPIVEEFLKKQKHKVVPS
VNGTPKSIVVTVQNIYYSPLSSSTLKKRAQFMFEIDS"
gene 4867..6783
/gene="gyrB"
/locus_tag="BSU00060"
/db_xref="GeneID:939456"
CDS 4867..6783
/gene="gyrB"
/locus_tag="BSU00060"
/EC_number="5.99.1.3"
/function="16.3: Control"
/function="16.2: Construct biomass (Anabolism)"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="NP_387887.1"
/db_xref="GI:16077074"
/db_xref="GeneID:939456"
/translation="MEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWE
IVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHA
GGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIG
ETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKN
EYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNN
INTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDP
QFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKA
RELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPL
RGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAH
IRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTP
KPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRN
FIEANARYVKNLDI"
misc_feature 4867..6780
/gene="gyrB"
/locus_tag="BSU00060"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:235542"
misc_feature 4978..5277
/gene="gyrB"
/locus_tag="BSU00060"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(4996..4998,5008..5010,5017..5019,5083..5085,
5089..5091,5095..5097,5101..5106,5221..5232)
/gene="gyrB"
/locus_tag="BSU00060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 5008..5010
/gene="gyrB"
/locus_tag="BSU00060"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(5095..5097,5101..5103,5221..5223,5227..5229)
/gene="gyrB"
/locus_tag="BSU00060"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 5536..6000
/gene="gyrB"
/locus_tag="BSU00060"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature 5689..5691
/gene="gyrB"
/locus_tag="BSU00060"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature order(5863..5865,5872..5877,5881..5883)
/gene="gyrB"
/locus_tag="BSU00060"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature order(5881..5883,5887..5889)
/gene="gyrB"
/locus_tag="BSU00060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature 6130..6471
/gene="gyrB"
/locus_tag="BSU00060"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(6148..6153,6160..6162,6367..6369,6373..6375,
6379..6381)
/gene="gyrB"
/locus_tag="BSU00060"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(6148..6150,6367..6369)
/gene="gyrB"
/locus_tag="BSU00060"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 6562..6747
/gene="gyrB"
/locus_tag="BSU00060"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6994..9459
/gene="gyrA"
/locus_tag="BSU00070"
/db_xref="GeneID:940002"
CDS 6994..9459
/gene="gyrA"
/locus_tag="BSU00070"
/EC_number="5.99.1.3"
/function="16.3: Control"
/function="16.2: Construct biomass (Anabolism)"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="NP_387888.1"
/db_xref="GI:16077075"
/db_xref="GeneID:940002"
/translation="MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKP
VHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYM
LVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVM
PSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF
PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK
IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL
LALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDA
VISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL
IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVV
TLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKV
YRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKR
TSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMG
RTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKT
AKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEE
HVATVALVEKNEEDENEEEQEEV"
misc_feature 7015..9411
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:235502"
misc_feature 7084..8418
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes...;
Region: TOP4c; cd00187"
/db_xref="CDD:238111"
misc_feature order(7084..7167,7180..7329,7333..7389,7393..7464,
7471..7473)
/gene="gyrA"
/locus_tag="BSU00070"
/note="CAP-like domain; other site"
/db_xref="CDD:238111"
misc_feature 7360..7362
/gene="gyrA"
/locus_tag="BSU00070"
/note="active site"
/db_xref="CDD:238111"
misc_feature order(8155..8163,8170..8181,8212..8217,8257..8307)
/gene="gyrA"
/locus_tag="BSU00070"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:238111"
misc_feature 8512..8649
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8656..8808
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8827..8961
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 8968..9105
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 9121..9264
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 9271..9411
/gene="gyrA"
/locus_tag="BSU00070"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
gene 9810..11364
/gene="rrnO-16S"
/locus_tag="BSU_rRNA_1"
/db_xref="GeneID:936774"
rRNA 9810..11364
/gene="rrnO-16S"
/locus_tag="BSU_rRNA_1"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936774"
gene 11464..11540
/gene="trnO-Ile"
/locus_tag="BSU_tRNA_5"
/db_xref="GeneID:2914186"
tRNA 11464..11540
/gene="trnO-Ile"
/locus_tag="BSU_tRNA_5"
/product="tRNA-Ile"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914186"
gene 11552..11627
/gene="trnO-Ala"
/locus_tag="BSU_tRNA_6"
/db_xref="GeneID:939967"
tRNA 11552..11627
/gene="trnO-Ala"
/locus_tag="BSU_tRNA_6"
/product="tRNA-Ala"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:939967"
gene 11709..14636
/gene="rrnO-23S"
/locus_tag="BSU_rRNA_2"
/db_xref="GeneID:939981"
rRNA 11709..14636
/gene="rrnO-23S"
/locus_tag="BSU_rRNA_2"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:939981"
gene 14692..14810
/gene="rrnO-5S"
/locus_tag="BSU_rRNA_3"
/db_xref="GeneID:2914271"
rRNA 14692..14810
/gene="rrnO-5S"
/locus_tag="BSU_rRNA_3"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914271"
gene complement(14847..15794)
/gene="yaaC"
/locus_tag="BSU00080"
/db_xref="GeneID:939969"
CDS complement(14847..15794)
/gene="yaaC"
/locus_tag="BSU00080"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387889.1"
/db_xref="GI:16077076"
/db_xref="GeneID:939969"
/translation="MTYHEWKDLALFYSVESTQKFLEKVYILNGINDAKKNSFKNSER
FIYFLKHAESFYKQAAYSPLEIKPILLFYGMAQLIKACLITRDPHYPSHTSVLAHGVT
TRKRKKQNYCFSDDEVKIQRNGLCVHFMKHLFGQSDIVDERYTMKKLLMAIPELSDIF
YFQQKERFMTKVEKDKNEIFVPEEVVINYKMSDSRFAEYMSHHYQWSFTKKNEHGLLF
EISPQDKEPWTSTSLLFDMEKNQYYIPSQREQFLRLPEMTIHYLILYNVGMIARYETE
WWYELLTQHISDDYVLIQQFLLVSEKKFPKYASQFLLHF"
misc_feature complement(14859..15779)
/gene="yaaC"
/locus_tag="BSU00080"
/note="YaaC-like Protein; Region: YaaC; pfam14175"
/db_xref="CDD:222578"
gene 15915..17381
/gene="guaB"
/locus_tag="BSU00090"
/db_xref="GeneID:938032"
CDS 15915..17381
/gene="guaB"
/locus_tag="BSU00090"
/EC_number="1.1.1.205"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the synthesis of xanthosine monophosphate
by the NAD+ dependent oxidation of inosine monophosphate"
/codon_start=1
/transl_table=11
/product="inosine 5'-monophosphate dehydrogenase"
/protein_id="NP_387890.1"
/db_xref="GI:16077077"
/db_xref="GeneID:938032"
/translation="MWESKFSKEGLTFDDVLLVPAKSEVLPRDVDLSVELTKTLKLNI
PVISAGMDTVTESAMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSERGVITNPFFL
TPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRDLRFISDYSMKISDVMTKE
ELVTASVGTTLDEAEKILQKHKIEKLPLVDDQNKLKGLITIKDIEKVIEFPNSSKDIH
GRLIVGAAVGVTGDTMTRVKKLVEANVDVIVIDTAHGHSQGVLNTVTKIRETYPELNI
IAGNVATAEATRALIEAGADVVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKH
GKTIIADGGIKFSGDITKALAAGGHAVMLGSLLAGTSESPGETEIYQGRRFKVYRGMG
SVAAMEKGSKDRYFQEENKKFVPEGIEGRTPYKGPVEETVYQLVGGLRSGMGYCGSKD
LRALREEAQFIRMTGAGLRESHPHDVQITKESPNYTIS"
misc_feature 15921..17378
/gene="guaB"
/locus_tag="BSU00090"
/note="inosine 5'-monophosphate dehydrogenase; Reviewed;
Region: PRK05567"
/db_xref="CDD:235507"
misc_feature 15942..>16181
/gene="guaB"
/locus_tag="BSU00090"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl17186"
/db_xref="CDD:247740"
misc_feature 16200..16532
/gene="guaB"
/locus_tag="BSU00090"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first step
unique to GTP synthesis, playing a...; Region:
CBS_pair_IMPDH; cd04601"
/db_xref="CDD:239974"
misc_feature <16557..17303
/gene="guaB"
/locus_tag="BSU00090"
/note="IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate (IMP)
to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of...; Region:
IMPDH; cd00381"
/db_xref="CDD:238223"
misc_feature order(16830..16838,16935..16937,16941..16943,17004..17009,
17076..17078,17082..17090,17160..17165)
/gene="guaB"
/locus_tag="BSU00090"
/note="active site"
/db_xref="CDD:238223"
gene 17534..18865
/gene="dacA"
/locus_tag="BSU00100"
/db_xref="GeneID:940000"
CDS 17534..18865
/gene="dacA"
/locus_tag="BSU00100"
/EC_number="3.4.16.4"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 8370539, 9864321; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine carboxypeptidase"
/protein_id="NP_387891.1"
/db_xref="GI:16077078"
/db_xref="GeneID:940000"
/translation="MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAI
MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEIS
QDNSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKE
LGLTDYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETS
SIAKTKFREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERN
GMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNFSMKEIYAEGDQVKGHKTISVDKGK
EKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLTAPVKKGTKVGKLTAEYTGDEKD
YGFLNSDLAGVDLVTKENVEKANWFVLTMRSIGGFFAGIWGSIVDTVTGWF"
misc_feature 17612..18862
/gene="dacA"
/locus_tag="BSU00100"
/note="D-alanyl-D-alanine carboxypeptidase [Cell envelope
biogenesis, outer membrane]; Region: DacC; COG1686"
/db_xref="CDD:224600"
misc_feature 17612..18400
/gene="dacA"
/locus_tag="BSU00100"
/note="Beta-lactamase enzyme family; Region:
Beta-lactamase2; cl17872"
/db_xref="CDD:248426"
misc_feature 18461..18772
/gene="dacA"
/locus_tag="BSU00100"
/note="Penicillin-binding protein 5, C-terminal domain;
Region: PBP5_C; smart00936"
/db_xref="CDD:198004"
gene 19062..19946
/gene="yaaD"
/locus_tag="BSU00110"
/db_xref="GeneID:939988"
CDS 19062..19946
/gene="yaaD"
/locus_tag="BSU00110"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="with PdxT forms pyridoxal 5'-phosphate from
glutamine, either ribose 5-phosphate or ribulose
5-phosphate, and either glyceraldehyde 3-phosphate or
dihydroxyacetone phosphate"
/codon_start=1
/transl_table=11
/product="pyridoxal biosynthesis lyase PdxS"
/protein_id="NP_387892.1"
/db_xref="GI:16077079"
/db_xref="GeneID:939988"
/translation="MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMA
LERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID
ESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA
VRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATP
ADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMK
GIEISNLLPEQRMQERGW"
misc_feature 19086..19943
/gene="yaaD"
/locus_tag="BSU00110"
/note="pyridoxal 5'-phosphate synthase, synthase subunit
Pdx1; Region: TIGR00343"
/db_xref="CDD:129443"
misc_feature 19092..19940
/gene="yaaD"
/locus_tag="BSU00110"
/note="PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some...; Region:
pdxS; cd04727"
/db_xref="CDD:240078"
misc_feature order(19131..19133,19188..19190,19302..19304,19518..19526,
19701..19703,19758..19760)
/gene="yaaD"
/locus_tag="BSU00110"
/note="active site"
/db_xref="CDD:240078"
misc_feature order(19233..19235,19239..19241,19263..19265,19308..19310,
19317..19325,19332..19334,19383..19397,19521..19529,
19533..19535,19542..19547,19554..19556,19707..19709,
19716..19721,19842..19844)
/gene="yaaD"
/locus_tag="BSU00110"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240078"
gene 19968..20558
/gene="yaaE"
/locus_tag="BSU00120"
/db_xref="GeneID:939971"
CDS 19968..20558
/gene="yaaE"
/locus_tag="BSU00120"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="with PdxST is involved in the biosynthesis of
pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of
glutamine to glutamate and ammonia; PdxS utilizes the
ammonia to synthesize pyridoxal 5'-phosphate"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase subunit PdxT"
/protein_id="NP_387893.1"
/db_xref="GI:16077080"
/db_xref="GeneID:939971"
/translation="MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLIL
PGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNV
VVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAK
QGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQKALV"
misc_feature 19977..20519
/gene="yaaE"
/locus_tag="BSU00120"
/note="Glutamine Amidotransferase (GATase_I) involved in
pyridoxine biosynthesis; Region: GATase1_PB; cd01749"
/db_xref="CDD:153220"
misc_feature 20016..20528
/gene="yaaE"
/locus_tag="BSU00120"
/note="Glutamine amidotransferase class-I; Region: GATase;
pfam00117"
/db_xref="CDD:215729"
misc_feature order(20103..20111,20202..20204,20283..20285,20367..20372,
20475..20477,20481..20483)
/gene="yaaE"
/locus_tag="BSU00120"
/note="predicted active site [active]"
/db_xref="CDD:153220"
misc_feature order(20202..20204,20475..20477,20481..20483)
/gene="yaaE"
/locus_tag="BSU00120"
/note="catalytic triad [active]"
/db_xref="CDD:153220"
gene 20611..20823
/locus_tag="BSU_misc_RNA_1"
/db_xref="GeneID:8303079"
misc_RNA 20611..20823
/locus_tag="BSU_misc_RNA_1"
/product="T-box"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:8303079"
gene 20880..22157
/gene="serS"
/locus_tag="BSU00130"
/db_xref="GeneID:939994"
CDS 20880..22157
/gene="serS"
/locus_tag="BSU00130"
/EC_number="6.1.1.11"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes a two-step reaction, first charging a
serine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="NP_387894.1"
/db_xref="GI:16077081"
/db_xref="GeneID:939994"
/translation="MLDTKMLRANFQEIKAKLVHKGEDLTDFDKFEALDDRRRELIGK
VEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVEAELDTILL
SIPNIPHESVPVGETEDDNVEVRKWGEKPSFAYEPKPHWDIADELGILDFERAAKVTG
SRFVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDA
FKIREEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLI
RQHQFNKVELVKFVKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKK
YDIEVWIPSQDTYREISSCSNFEAFQARRANIRFRREAKGKPEHVHTLNGSGLAVGRT
VAAILENYQQEDGSVVIPKVLRPYMGNREVMKP"
misc_feature 20880..22154
/gene="serS"
/locus_tag="BSU00130"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:235461"
misc_feature 20880..21203
/gene="serS"
/locus_tag="BSU00130"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:217020"
misc_feature 21237..22130
/gene="serS"
/locus_tag="BSU00130"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme...; Region:
SerRS_core; cd00770"
/db_xref="CDD:238393"
misc_feature order(21339..21356,21363..21383,21393..21395,21399..21401,
21405..21407,21414..21416,21453..21464,21468..21476,
21480..21482,21534..21539,21543..21545,21555..21557,
21582..21584,21594..21596,21606..21608,21654..21656,
21717..21719,22125..22130)
/gene="serS"
/locus_tag="BSU00130"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238393"
misc_feature order(21360..21362,21570..21572,21576..21578,21663..21665,
21669..21671,21687..21689,21696..21698,21705..21707,
21711..21713,21720..21722,21726..21728,21732..21734,
21924..21935,22026..22028,22032..22034,22050..22052)
/gene="serS"
/locus_tag="BSU00130"
/note="active site"
/db_xref="CDD:238393"
misc_feature 21453..21476
/gene="serS"
/locus_tag="BSU00130"
/note="motif 1; other site"
/db_xref="CDD:238393"
misc_feature 21660..21671
/gene="serS"
/locus_tag="BSU00130"
/note="motif 2; other site"
/db_xref="CDD:238393"
misc_feature order(22035..22043,22050..22052)
/gene="serS"
/locus_tag="BSU00130"
/note="motif 3; other site"
/db_xref="CDD:238393"
gene 22292..22384
/gene="trnSL-Ser1"
/locus_tag="BSU_tRNA_7"
/db_xref="GeneID:2914247"
tRNA 22292..22384
/gene="trnSL-Ser1"
/locus_tag="BSU_tRNA_7"
/product="tRNA-Ser"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914247"
gene complement(22496..23149)
/gene="dck"
/locus_tag="BSU00140"
/db_xref="GeneID:936793"
CDS complement(22496..23149)
/gene="dck"
/locus_tag="BSU00140"
/EC_number="2.7.1.74"
/EC_number="2.7.1.76"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11078735, 6251049;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="deoxyadenosine/deoxycytidine kinase"
/protein_id="NP_387895.1"
/db_xref="GI:16077082"
/db_xref="GeneID:936793"
/translation="MKEHHIPKNSIITVAGTVGVGKSTLTKTLAKRLGFKTSLEEVDH
NPYLEKFYHDFERWSFHLQIYFLAERFKEQKTIFEAGGGFVQDRSIYEDTGIFAKMHA
DKGTMSKVDYKTYTSLFEAMVMTPYFPHPDVLIYLEGDLENILNRIEQRGREMELQTS
RSYWEEMHTRYENWISGFNACPVLKLRIEDYDLLNDENSIENIVDQIASVIHDNQKK"
misc_feature complement(22499..23134)
/gene="dck"
/locus_tag="BSU00140"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:224345"
misc_feature complement(22559..23119)
/gene="dck"
/locus_tag="BSU00140"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:238836"
misc_feature complement(order(22682..22684,22697..22699,22859..22861,
22961..22966,22994..22996,23081..23086,23090..23092))
/gene="dck"
/locus_tag="BSU00140"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:238836"
misc_feature complement(22940..22942)
/gene="dck"
/locus_tag="BSU00140"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:238836"
gene complement(23146..23769)
/gene="dgk"
/locus_tag="BSU00150"
/db_xref="GeneID:937037"
CDS complement(23146..23769)
/gene="dgk"
/locus_tag="BSU00150"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11078735; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="deoxyguanosine kinase"
/protein_id="NP_387896.1"
/db_xref="GI:16077083"
/db_xref="GeneID:937037"
/translation="MNTAPFIAIEGPIGAGKTTLATMLSQKFGFPMINEIVEDNPYLD
KFYDNIKEWSFQLEMFFLCHRYKQLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSP
HQLEKYKKIYHLLTDDLPKPNFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLIS
DYEVAIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV"
misc_feature complement(23149..23769)
/gene="dgk"
/locus_tag="BSU00150"
/note="Deoxynucleoside kinases [Nucleotide transport and
metabolism]; Region: COG1428"
/db_xref="CDD:224345"
misc_feature complement(23194..23754)
/gene="dgk"
/locus_tag="BSU00150"
/note="Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family consists
of various deoxynucleoside kinases including deoxyribo-
cytidine (EC 2.7.1.74), guanosine (EC 2.7.1; Region: dNK;
cd01673"
/db_xref="CDD:238836"
misc_feature complement(order(23329..23331,23344..23346,23482..23484,
23596..23601,23629..23631,23716..23721,23725..23727))
/gene="dgk"
/locus_tag="BSU00150"
/note="Substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:238836"
misc_feature complement(23575..23577)
/gene="dgk"
/locus_tag="BSU00150"
/note="Substrate specificity [chemical binding]; other
site"
/db_xref="CDD:238836"
gene complement(23868..25151)
/gene="yaaH"
/locus_tag="BSU00160"
/db_xref="GeneID:937029"
CDS complement(23868..25151)
/gene="yaaH"
/locus_tag="BSU00160"
/function="16.13: Shape"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11011148, 11737650,
12177332, 10419957; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="spore peptidoglycan hydrolase"
/protein_id="NP_387897.1"
/db_xref="GI:16077084"
/db_xref="GeneID:937029"
/translation="MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPI
AGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESN
AYLEPRGNQVSENLQQAAREASPYLTYLGAFSFQAQRNGTLVAPPLTNLRSITESQNT
TLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQ
DREAYNQFLREARDLFHREGLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLM
TYEWGYSGGPPQAVSPIGPVRDVIEYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPA
RAVSPQQAIVIADQNNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIK
ELNLRGISYWKLGLSFPQNWLLLSDQFNVVKKTFR"
misc_feature complement(23892..25151)
/gene="yaaH"
/locus_tag="BSU00160"
/note="Predicted glycosyl hydrolase [General function
prediction only]; Region: COG3858"
/db_xref="CDD:226376"
misc_feature complement(25026..25148)
/gene="yaaH"
/locus_tag="BSU00160"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(24879..25013)
/gene="yaaH"
/locus_tag="BSU00160"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(23907..24857)
/gene="yaaH"
/locus_tag="BSU00160"
/note="Cortical fragment-lytic enzyme (CFLE) is a
peptidoglycan hydrolase involved in bacterial endospore
germination. CFLE is expressed as an inactive preprotein
(called SleB) in the forespore compartment of sporulating
cells. SleB translocates across the...; Region:
GH18_CFLE_spore_hydrolase; cd02874"
/db_xref="CDD:119353"
misc_feature complement(order(23946..23948,24195..24197,24315..24320,
24324..24326,24513..24515,24519..24521,24525..24527,
24630..24632,24750..24755,24843..24845))
/gene="yaaH"
/locus_tag="BSU00160"
/note="active site"
/db_xref="CDD:119353"
gene complement(25221..25766)
/gene="yaaI"
/locus_tag="BSU00170"
/db_xref="GeneID:937036"
CDS complement(25221..25766)
/gene="yaaI"
/locus_tag="BSU00170"
/EC_number="3.3.2.1"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 2521622; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="isochorismatase"
/protein_id="NP_387898.1"
/db_xref="GI:16077085"
/db_xref="GeneID:937036"
/translation="MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHAR
QNEWPIIYINDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYE
TALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFA
LTMMENVLFAEITTEEQIIEK"
misc_feature complement(25236..25748)
/gene="yaaI"
/locus_tag="BSU00170"
/note="Isochorismatase family; Region: Isochorismatase;
pfam00857"
/db_xref="CDD:216156"
misc_feature complement(25272..25748)
/gene="yaaI"
/locus_tag="BSU00170"
/note="Cysteine hydrolases; This family contains
amidohydrolases, like CSHase (N-carbamoylsarcosine
amidohydrolase), involved in creatine metabolism and
nicotinamidase, converting nicotinamide to nicotinic acid
and ammonia in the pyridine nucleotide cycle. It...;
Region: cysteine_hydrolases; cd00431"
/db_xref="CDD:238245"
misc_feature complement(order(25386..25388,25485..25487,25731..25733))
/gene="yaaI"
/locus_tag="BSU00170"
/note="catalytic triad [active]"
/db_xref="CDD:238245"
misc_feature complement(25398..25403)
/gene="yaaI"
/locus_tag="BSU00170"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:238245"
gene 25852..26337
/gene="tadA"
/locus_tag="BSU00180"
/db_xref="GeneID:937989"
CDS 25852..26337
/gene="tadA"
/locus_tag="BSU00180"
/EC_number="3.5.-.-"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 16014871, 16700551; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="tRNA specific adenosine deaminase"
/protein_id="NP_387899.1"
/db_xref="GI:16077086"
/db_xref="GeneID:937989"
/translation="MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLR
ETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGA
FDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSAFFRELRKKKKAARKNLS
E"
misc_feature 25921..26196
/gene="tadA"
/locus_tag="BSU00180"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:238612"
misc_feature order(25927..25929,25975..25977,26008..26016,26098..26100,
26107..26109)
/gene="tadA"
/locus_tag="BSU00180"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:238612"
misc_feature order(26002..26004,26017..26019,26029..26031,26101..26106,
26113..26118,26125..26130)
/gene="tadA"
/locus_tag="BSU00180"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238612"
misc_feature order(26008..26016,26095..26100,26107..26109)
/gene="tadA"
/locus_tag="BSU00180"
/note="catalytic motif [active]"
/db_xref="CDD:238612"
gene 26533..26635
/gene="scr"
/locus_tag="BSU_misc_RNA_2"
/db_xref="GeneID:8302906"
misc_RNA 26533..26635
/gene="scr"
/locus_tag="BSU_misc_RNA_2"
/product="small cytoplasmic RNA (scRNA, 4.5S RNA), signal
recognition particle-like (SRP) component"
/inference="profile:Rfam:8.1"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain"
/db_xref="GeneID:8302906"
gene 26814..28505
/gene="dnaX"
/locus_tag="BSU00190"
/db_xref="GeneID:936899"
CDS 26814..28505
/gene="dnaX"
/locus_tag="BSU00190"
/EC_number="2.7.7.7"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand the tau chain serves as a
scaffold to help in the dimerizaton of the alpha,epsilon
and theta core complex; the gamma chain seems to interact
with the delta and delta' subunits to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunits gamma and tau"
/protein_id="NP_387900.2"
/db_xref="GI:255767015"
/db_xref="GeneID:936899"
/translation="MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFS
GPRGTGKTSAAKIFAKAVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD
EIRDIRDKVKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPH
KIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDAL
SLLDQAISFSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGK
DPAKLIEDMIFYFRDMLLYKTAPGLEGVLEKVKVDETFRELSEQIPAQALYEMIDILN
KSHQEMKWTNHPRIFFEVAVVKICQTSHQSAADLPEVDMLMKKIQQLEQEVERLKTTG
IKAAAESPKKEAPRVPKGGKSNYKAPVGRIHEILKEATRPDLDLLRNSWGKLLAHLKQ
QNKVSHAALLNDSEPVAAGSAAFVLKFKYEIHCKMVAEDNNGVRTNLEQILESMLGKR
MDLIGVPEAQWGKIREEFLEDHQQENEGSNEPAEEDPLIAEAKKLVGADLIEIKD"
misc_feature 26814..28502
/gene="dnaX"
/locus_tag="BSU00190"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK05563"
/db_xref="CDD:235505"
misc_feature 26868..27329
/gene="dnaX"
/locus_tag="BSU00190"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 26946..26969
/gene="dnaX"
/locus_tag="BSU00190"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(26949..26972,27189..27191,27282..27284)
/gene="dnaX"
/locus_tag="BSU00190"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 27177..27194
/gene="dnaX"
/locus_tag="BSU00190"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 27318..27320
/gene="dnaX"
/locus_tag="BSU00190"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 27567..27947
/gene="dnaX"
/locus_tag="BSU00190"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
gene 28529..28852
/gene="yaaK"
/locus_tag="BSU00200"
/db_xref="GeneID:937027"
CDS 28529..28852
/gene="yaaK"
/locus_tag="BSU00200"
/function="16.3: Control"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 16740939; Product type f: factor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387901.1"
/db_xref="GI:16077088"
/db_xref="GeneID:937027"
/translation="MRGGMGNMQKMMKQMQKMQKDMAKAQEELAEKVVEGTAGGGMVT
VKANGQKEILDVIIKEEVVDPEDIDMLQDLVLAATNEALKKVDEITNETMGQFTKGMN
MPGLF"
misc_feature <28607..28849
/gene="yaaK"
/locus_tag="BSU00200"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:234669"
gene 28867..29463
/gene="recR"
/locus_tag="BSU00210"
/db_xref="GeneID:937197"
CDS 28867..29463
/gene="recR"
/locus_tag="BSU00210"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="NP_387902.1"
/db_xref="GI:16077089"
/db_xref="GeneID:937197"
/translation="MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFA
KALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNG
QYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL"
misc_feature 28870..29460
/gene="recR"
/locus_tag="BSU00210"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:234616"
misc_feature 28978..29100
/gene="recR"
/locus_tag="BSU00210"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 29104..29439
/gene="recR"
/locus_tag="BSU00210"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(29122..29127,29134..29136,29296..29298,29302..29304,
29308..29310)
/gene="recR"
/locus_tag="BSU00210"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(29122..29124,29296..29298)
/gene="recR"
/locus_tag="BSU00210"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(29140..29148,29152..29157,29278..29280,29284..29286,
29290..29292,29299..29301,29335..29337,29365..29400,
29404..29406,29419..29421,29425..29427,29431..29439)
/gene="recR"
/locus_tag="BSU00210"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 29481..29705
/gene="yaaL"
/locus_tag="BSU00220"
/db_xref="GeneID:937026"
CDS 29481..29705
/gene="yaaL"
/locus_tag="BSU00220"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387903.1"
/db_xref="GI:16077090"
/db_xref="GeneID:937026"
/translation="MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAE
VLYELKVAEAKYFFYLREAKQRNLKISRWK"
misc_feature 29481..29693
/gene="yaaL"
/locus_tag="BSU00220"
/note="Protein of unknown function (DUF2508); Region:
DUF2508; pfam10704"
/db_xref="CDD:220854"
gene 29772..30035
/gene="bofA"
/locus_tag="BSU00230"
/db_xref="GeneID:937025"
CDS 29772..30035
/gene="bofA"
/locus_tag="BSU00230"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15087499; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="inhibitor of the pro-sigma(K) processing
machinery"
/protein_id="NP_387904.2"
/db_xref="GI:255767016"
/db_xref="GeneID:937025"
/translation="MEPIFIIGIILGLVILLFLSGSAAKPLKWIGITAVKFVAGALLL
VCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII"
misc_feature 29829..30029
/gene="bofA"
/locus_tag="BSU00230"
/note="pro-sigmaK processing inhibitor BofA; Region:
spore_BofA; TIGR02862"
/db_xref="CDD:163046"
gene 30279..31832
/gene="rrnA-16S"
/locus_tag="BSU_rRNA_4"
/db_xref="GeneID:936895"
rRNA 30279..31832
/gene="rrnA-16S"
/locus_tag="BSU_rRNA_4"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936895"
gene 31932..32008
/gene="trnA-Ile"
/locus_tag="BSU_tRNA_8"
/db_xref="GeneID:2914254"
tRNA 31932..32008
/gene="trnA-Ile"
/locus_tag="BSU_tRNA_8"
/product="tRNA-Ile"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914254"
gene 32020..32095
/gene="trnA-Ala"
/locus_tag="BSU_tRNA_9"
/db_xref="GeneID:2914217"
tRNA 32020..32095
/gene="trnA-Ala"
/locus_tag="BSU_tRNA_9"
/product="tRNA-Ala"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914217"
gene 32177..35103
/gene="rrnA-23S"
/locus_tag="BSU_rRNA_5"
/db_xref="GeneID:936943"
rRNA 32177..35103
/gene="rrnA-23S"
/locus_tag="BSU_rRNA_5"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936943"
gene 35237..35355
/gene="rrnA-5S"
/locus_tag="BSU_rRNA_26"
/db_xref="GeneID:2914205"
rRNA 35237..35355
/gene="rrnA-5S"
/locus_tag="BSU_rRNA_26"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914205"
gene 35531..35725
/gene="csfB"
/locus_tag="BSU00240"
/db_xref="GeneID:937016"
CDS 35531..35725
/gene="csfB"
/locus_tag="BSU00240"
/function="16.5: Explore"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15044948, 8759874;
Product type cp: cell process"
/codon_start=1
/transl_table=11
/product="forespore-specific protein"
/protein_id="NP_387905.1"
/db_xref="GI:16077092"
/db_xref="GeneID:937016"
/translation="MDETVKLNHTCVICDQEKNRGIHLYTKFICLDCERKVISTSTSD
PDYAFYVKKLKSIHTPPLYS"
misc_feature 35558..35695
/gene="csfB"
/locus_tag="BSU00240"
/note="Inhibitor of sigma-G Gin; Region: Gin; pfam10764"
/db_xref="CDD:204552"
gene 35845..36459
/gene="xpaC"
/locus_tag="BSU00250"
/db_xref="GeneID:937019"
CDS 35845..36459
/gene="xpaC"
/locus_tag="BSU00250"
/function="16.11: Scavenge (Catabolism)"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="phosphatase"
/protein_id="NP_387906.1"
/db_xref="GI:16077093"
/db_xref="GeneID:937019"
/translation="MQRFFHFLVWSLTSSATFVFIGILSFFGLNQSIFLSIVYGLASG
AAVYIAGIWNARRLFLKKHELTGREYAYIKKNLEEARQKMVRLRKALFQAKSIQMFKQ
NAEMLRIVRRIYLLTKKEPKRFYQAERFFYQTLDSVVELTEKYAFLSSHPKKSKELSM
SLSETRITLTELTKRLEEDLTQAMGDEIDELQFELDAAKHSLKK"
misc_feature 35845..36456
/gene="xpaC"
/locus_tag="BSU00250"
/note="5-bromo-4-chloroindolyl phosphate hydrolysis
protein [General function prediction only]; Region: XpaC;
COG4915"
/db_xref="CDD:227252"
gene 36478..37638
/gene="yaaN"
/locus_tag="BSU00260"
/db_xref="GeneID:936551"
CDS 36478..37638
/gene="yaaN"
/locus_tag="BSU00260"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function; PubMedId: 12533473"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387907.1"
/db_xref="GI:16077094"
/db_xref="GeneID:936551"
/translation="MNRDQSDLHIDELLADPFGGNIEIPGSEAVKAEKEQVRLVDVLP
EENKEKAIQLAGQIDHKNMQSIVLYGSQAQSKLLNFSHDMINHVQKKDVGEIGEILGE
LMKKLEQVNPDDLQSKKKGFLARMFGRVSSSLQEVLSKYQKTSVQIDRISLKLEHSKN
ALISDNKLLEQLYEKNKEYFAALNVYIAAGELKLEELKTKTIPELKQQAESSDHNQMA
VQEVNDLIQFADRLDKRVHDLLLSRQITIQSAPQIRLIQNTNQALAEKIQSSIVTAIP
LWKNQVAIALTLLRQRNAVDAQQKVSDTTNELLLKNAELLKTNTIETARANERGLVDI
DTLKKVQESLISTLEETLTIQEEGRIKRRQAEEELMMMEGDLKQKLITIKER"
misc_feature 36625..37629
/gene="yaaN"
/locus_tag="BSU00260"
/note="Toxic anion resistance protein (TelA); Region:
TelA; pfam05816"
/db_xref="CDD:218762"
gene 37720..39162
/gene="yaaO"
/locus_tag="BSU00270"
/db_xref="GeneID:937013"
CDS 37720..39162
/gene="yaaO"
/locus_tag="BSU00270"
/EC_number="4.1.1.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 9723923; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="lysine decarboxylase"
/protein_id="NP_387908.1"
/db_xref="GI:16077095"
/db_xref="GeneID:937013"
/translation="MNTPLYKALIQHARRNSHSFHVPGHHNGDVFFDDAKSIFDPLLT
IDVTELAGLDDLHHPSGVIKEAQELASQLYGSAESFFLVNGTTVGNLAMILSVCEPGD
TILVQRNCHKSVFHAVDLSGAEPVYLAPDVDSAMHVPTHVPLGTIKEALEAYPDAKGL
VLTNPTYYGHSADLTEIITEAHHYGIPVLVDEAHGAHFILGEPFPVSALKMGADIVVQ
SAHKTLPAMTMGSYLHLNSSCRINRDRVAEYLNRLQSSSPSYPIMASLDIARAYVQHI
IEEQKLSDILQRIETLKQTFDSLTNAEAVNPANPLIITDPLKLTIRSKRGHSGYTLQS
ILERANIFTELADENQVLLVLPLGGKRRINAEIIRSIDEEIEKTPPDQTFVSAEWGVQ
PVTVLPYPKKVLHSFKKEYVSFEEAAGRLNAEDIIPYPPGIPMIMAGERITKESVQKL
SRLISMKTHVQGNMKIKEKQLLVYIEEEKS"
misc_feature 37726..38808
/gene="yaaO"
/locus_tag="BSU00270"
/note="Orn/Lys/Arg decarboxylase, major domain; Region:
OKR_DC_1; pfam01276"
/db_xref="CDD:201705"
misc_feature 37729..38613
/gene="yaaO"
/locus_tag="BSU00270"
/note="Ornithine decarboxylase family. This family belongs
to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine...; Region:
Orn_deC_like; cd00615"
/db_xref="CDD:99739"
misc_feature order(37855..37857,37867..37869,37891..37893,37966..37974,
37978..37983,37990..37992,38002..38010,38014..38019,
38050..38055,38380..38385,38392..38406,38461..38466,
38470..38478,38482..38484,38503..38505,38512..38514,
38521..38523,38560..38565)
/gene="yaaO"
/locus_tag="BSU00270"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99739"
misc_feature order(37972..37980,38050..38052,38056..38058,38206..38208,
38290..38292,38296..38301,38374..38376,38380..38385)
/gene="yaaO"
/locus_tag="BSU00270"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99739"
misc_feature 38383..38385
/gene="yaaO"
/locus_tag="BSU00270"
/note="catalytic residue [active]"
/db_xref="CDD:99739"
gene 39159..39797
/gene="tmk"
/locus_tag="BSU00280"
/db_xref="GeneID:937018"
CDS 39159..39797
/gene="tmk"
/locus_tag="BSU00280"
/EC_number="2.7.4.9"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the reversible phosphoryl transfer from
adenosine triphosphate (ATP) to thymidine monophosphate
(dTMP) to form thymidine diphosphate (dTDP)"
/codon_start=1
/transl_table=11
/product="thymidylate kinase"
/protein_id="NP_387909.2"
/db_xref="GI:255767017"
/db_xref="GeneID:937018"
/translation="MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGID
IAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSL
AYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLE
KLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL"
misc_feature 39159..39782
/gene="tmk"
/locus_tag="BSU00280"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:234814"
misc_feature 39168..39773
/gene="tmk"
/locus_tag="BSU00280"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:238835"
misc_feature order(39207..39209,39366..39368,39378..39380,39441..39446,
39468..39470,39603..39605)
/gene="tmk"
/locus_tag="BSU00280"
/note="TMP-binding site; other site"
/db_xref="CDD:238835"
misc_feature order(39210..39212,39591..39593,39720..39722)
/gene="tmk"
/locus_tag="BSU00280"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238835"
gene 39871..40200
/gene="yaaQ"
/locus_tag="BSU00290"
/db_xref="GeneID:938610"
CDS 39871..40200
/gene="yaaQ"
/locus_tag="BSU00290"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function; PubMedId: 10913081"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387910.1"
/db_xref="GI:16077097"
/db_xref="GeneID:938610"
/translation="MKLIVAVVQDQDSNRLLKTLTDHNFRVTKLATTGGFLKSGNTTF
MIGVEDIRVNKALSLIKENGQKRDQMIAPVSPMGGNADSYVPYPVEVEVGGATVFVLP
VDEFHQF"
misc_feature 39871..40197
/gene="yaaQ"
/locus_tag="BSU00290"
/note="Protein of unknown function (DUF970); Region:
DUF970; pfam06153"
/db_xref="CDD:114848"
gene 40213..40653
/gene="yaaR"
/locus_tag="BSU00300"
/db_xref="GeneID:936756"
CDS 40213..40653
/gene="yaaR"
/locus_tag="BSU00300"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387911.1"
/db_xref="GI:16077098"
/db_xref="GeneID:936756"
/translation="MKINKDIRTFIDNKQIPSVKTSEITASFKTSMENQSSKMKLDQL
TRLLSDIEAFGKRLTKSRNFKDLARFKGLVKRFVKEAVDSGLSHETSKSFDLYGNSRT
LGLVKEIDDKLIQLTEEMMDQEKPAIDLLERIGEIKGLLINLYT"
misc_feature 40213..40650
/gene="yaaR"
/locus_tag="BSU00300"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1728"
/db_xref="CDD:224642"
gene 40665..41654
/gene="holB"
/locus_tag="BSU00310"
/db_xref="GeneID:935949"
CDS 40665..41654
/gene="holB"
/locus_tag="BSU00310"
/EC_number="2.7.7.7"
/function="16.9: Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the delta' subunit seems to
interact with the gamma subunit to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="NP_387912.1"
/db_xref="GI:16077099"
/db_xref="GeneID:935949"
/translation="MAISWKEMNELQPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLD
AALLLAKSFFCLEGGAEPCESCRNCKRIESGNHPDLHLVQPDGLSIKKAQIQALQEEF
SKTGLESHKKLYIISHADQMTANAANSLLKFLEEPNKDTMAVLITEQPQRLLDTIISR
CQTLPFQPLQPKAIEDRLIEQDVSPHMARLLANMTNNVAEAVELSRNDEFAESRAKVI
KLYEVLHQRKGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKLIY
QDLFQSIKQHALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLMLQEG"
misc_feature 40668..41651
/gene="holB"
/locus_tag="BSU00310"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08058"
/db_xref="CDD:181214"
misc_feature <41004..>41219
/gene="holB"
/locus_tag="BSU00310"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08485"
/db_xref="CDD:236274"
gene 41657..42484
/gene="yaaT"
/locus_tag="BSU00320"
/db_xref="GeneID:937012"
CDS 41657..42484
/gene="yaaT"
/locus_tag="BSU00320"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function; PubMedId: 12270811"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387913.1"
/db_xref="GI:16077100"
/db_xref="GeneID:937012"
/translation="MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQV
VIANKQVDEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKKVIEHGLDMKL
VDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQ
LPDIGEMITTANGPAKVVGLNILERVLQVELINREKVIEYTWEELLEEGVVSAQTTD"
misc_feature 41657..42451
/gene="yaaT"
/locus_tag="BSU00320"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:224688"
gene 42499..42858
/gene="yabA"
/locus_tag="BSU00330"
/db_xref="GeneID:937008"
CDS 42499..42858
/gene="yabA"
/locus_tag="BSU00330"
/function="16.9: Replicate"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="in Bacillus subtilis this protein is involved in
the negative regulation of DNA replication initiation;
interacts with DnaN and DnaA"
/codon_start=1
/transl_table=11
/product="DNA replication intiation control protein YabA"
/protein_id="NP_387914.1"
/db_xref="GI:16077101"
/db_xref="GeneID:937008"
/translation="MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLE
NKHLRKRLDDTTQQIEKFKADKKESKTQKTEQTDIGEGYDNLARLYQEGFHICNVHYG
SVRKEDCLFCLSFLNKK"
misc_feature 42499..42855
/gene="yabA"
/locus_tag="BSU00330"
/note="DNA replication intiation control protein YabA;
Reviewed; Region: PRK13169"
/db_xref="CDD:183876"
gene 42917..43660
/gene="yabB"
/locus_tag="BSU00340"
/db_xref="GeneID:937011"
CDS 42917..43660
/gene="yabB"
/locus_tag="BSU00340"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_387915.1"
/db_xref="GI:16077102"
/db_xref="GeneID:937011"
/translation="MVSLHDDERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPI
QKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHD
DLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSK
LLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRP
DLKILPPLFVYDEQNEYTKEIRTILYGDK"
misc_feature 42926..43651
/gene="yabB"
/locus_tag="BSU00340"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:226608"
misc_feature 43058..43429
/gene="yabB"
/locus_tag="BSU00340"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(43070..43090,43139..43144,43217..43225,43280..43282)
/gene="yabB"
/locus_tag="BSU00340"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 43647..43946
/gene="yazA"
/locus_tag="BSU00350"
/db_xref="GeneID:937002"
CDS 43647..43946
/gene="yazA"
/locus_tag="BSU00350"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 11483577; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="GIY-YIG nuclease superfamily protein"
/protein_id="NP_387916.1"
/db_xref="GI:16077103"
/db_xref="GeneID:937002"
/translation="METNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKV
RRPVELIFAESFSTKREAMQAEYYFKKLTRKKKELYIEEKRNSKEAVYVKAPNEL"
misc_feature 43662..43865
/gene="yazA"
/locus_tag="BSU00350"
/note="The GIY-YIG domain of uncharacterized protein
family UPF0213 related to structure-specific endonuclease
SLX1; Region: GIY-YIG_UPF0213; cd10456"
/db_xref="CDD:198403"
misc_feature order(43665..43673,43701..43709)
/gene="yazA"
/locus_tag="BSU00350"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198403"
misc_feature order(43671..43673,43701..43703,43707..43709,43731..43733,
43743..43745,43842..43844)
/gene="yazA"
/locus_tag="BSU00350"
/note="putative active site [active]"
/db_xref="CDD:198403"
misc_feature 43842..43844
/gene="yazA"
/locus_tag="BSU00350"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198403"
gene 43921..44799
/gene="yabC"
/locus_tag="BSU00360"
/db_xref="GeneID:937010"
CDS 43921..44799
/gene="yabC"
/locus_tag="BSU00360"
/function="16.8: Protect"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16014871; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_387917.1"
/db_xref="GI:16077104"
/db_xref="GeneID:937010"
/translation="MLRRQMSFNGKSDMGILYLVPTPIGNLEDMTFRAIDTLKSVDAI
AAEDTRQTKKLCHVYEIETPLVSYHEHNKESSGHKIIEWLKSGKNIALVSDAGLPTIS
DPGAEIVKDFTDIGGYVVPLPGANAALTALIASGIVPQPFFFYGFLNRQKKEKKKELE
ALKKRQETIIFYEAPHRLKETLSAMAEILGDREIAVTRELTKKYEEFIRGTISEVIGW
ANEDQIRGEFCLVVEGSNNEEVDEEEQWWETLTAKEHVEHYISKGATSKEAIKKAAVD
RNVPKREVYDAYHIKQ"
misc_feature 43951..44796
/gene="yabC"
/locus_tag="BSU00360"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:223390"
misc_feature 43969..44610
/gene="yabC"
/locus_tag="BSU00360"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(43990..43992,44206..44214,44221..44226,44296..44301,
44434..44436,44509..44511,44515..44520,44599..44607)
/gene="yabC"
/locus_tag="BSU00360"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(44008..44019,44023..44025,44212..44229,44236..44241,
44245..44250,44281..44283,44287..44298,44302..44307,
44314..44319,44344..44358)
/gene="yabC"
/locus_tag="BSU00360"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene complement(44848..45138)
/gene="abrB"
/locus_tag="BSU00370"
/db_xref="GeneID:937009"
CDS complement(44848..45138)
/gene="abrB"
/locus_tag="BSU00370"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16159768, 16223496,
16702211, 10754235, 10809710, 11101881, 11101897; Product
type r: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_387918.1"
/db_xref="GI:16077105"
/db_xref="GeneID:937009"
/translation="MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEK
IILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK"
misc_feature complement(44863..45132)
/gene="abrB"
/locus_tag="BSU00370"
/note="Regulators of stationary/sporulation gene
expression [Transcription]; Region: AbrB; COG2002"
/db_xref="CDD:224913"
misc_feature complement(44983..45111)
/gene="abrB"
/locus_tag="BSU00370"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 45633..47627
/gene="metS"
/locus_tag="BSU00380"
/db_xref="GeneID:936877"
CDS 45633..47627
/gene="metS"
/locus_tag="BSU00380"
/EC_number="6.1.1.10"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="methionine--tRNA ligase; MetRS; adds methionine to
tRNA(Met) with cleavage of ATP to AMP and diphosphate;
some MetRS enzymes form dimers depending on a C-terminal
domain that is also found in other proteins such as
Trbp111 in Aquifex aeolicus and the cold-shock protein
CsaA from Bacillus subtilis while others do not; four
subfamilies exist based on sequence motifs and zinc
content"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="NP_387919.1"
/db_xref="GI:16077106"
/db_xref="GeneID:936877"
/translation="MPQENNTFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRLKGF
DVRYLTGTDEHGQKIQQKAEQENITPQEYVDRAAADIQKLWKQLEISNDDFIRTTEKR
HKVVIEKVFQKLLDNGDIYLDEYEGWYSIPDETFYTETQLVDIERNEKGEVIGGKSPD
SGHPVELIKEESYFFRMGKYADRLLKYYEENPTFIQPESRKNEMINNFIKPGLEDLAV
SRTTFDWGVKVPENPKHVVYVWIDALFNYLTALGYDTENDELYQKYWPADVHLVGKEI
VRFHTIYWPIMLMALDLPLPKQVFAHGWLLMKDGKMSKSKGNVVDPVTLIERYGLDEL
RYYLLREVPFGSDGVFTPEGFVERINYDLANDLGNLLNRTVAMINKYFDGQIGSYKGA
VTEFDHTLTSVAEETVKAYEKAMENMEFSVALSTLWQLISRTNKYIDETAPWVLAKDP
AKEEELRSVMYHLAESLRISAVLLQPFLTKTPEKMFEQLGITDESLKAWDSITAFGQL
KDTKVQKGEPLFPRLEAEEEIAYIKGKMQGSAPAKEETKEEEPQEVDRLPEITIDQFM
DVELRVAEVIEAEPVKKADRLLKLQLDLGFEKRQVVSGIAKHYTPEELVGKKLVCVTN
LKPVKLRGELSQGMILAGEADGVLKVVSIDQSLPKGTRIK"
misc_feature 45639..47624
/gene="metS"
/locus_tag="BSU00380"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK12267"
/db_xref="CDD:237028"
misc_feature 45651..46682
/gene="metS"
/locus_tag="BSU00380"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(45669..45674,45678..45680,45789..45791,46350..46352,
46359..46364,46371..46373,46458..46460,46470..46472)
/gene="metS"
/locus_tag="BSU00380"
/note="active site"
/db_xref="CDD:173907"
misc_feature 45696..45707
/gene="metS"
/locus_tag="BSU00380"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 46563..46577
/gene="metS"
/locus_tag="BSU00380"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 46707..47099
/gene="metS"
/locus_tag="BSU00380"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(46710..46712,46731..46736,46743..46748,46755..46760,
46767..46772,46779..46784,46935..46940,46944..46949,
46962..46964)
/gene="metS"
/locus_tag="BSU00380"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(46731..46733,46743..46748,46755..46760,46767..46772,
46779..46784,46944..46946,46962..46964)
/gene="metS"
/locus_tag="BSU00380"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
misc_feature 47310..47624
/gene="metS"
/locus_tag="BSU00380"
/note="tRNA-binding-domain-containing Escherichia coli
methionyl-tRNA synthetase (EcMetRS)-like proteins. This
family includes EcMetRS and Aquifex aeolicus Trbp111
(AaTrbp111). This domain has general tRNA binding
properties. MetRS aminoacylates methionine...; Region:
tRNA_bind_EcMetRS_like; cd02800"
/db_xref="CDD:239199"
misc_feature order(47313..47315,47454..47456,47502..47510,47517..47519,
47553..47564,47580..47582,47586..47588,47592..47594,
47601..47603,47613..47624)
/gene="metS"
/locus_tag="BSU00380"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239199"
misc_feature order(47388..47390,47424..47426,47502..47504,47514..47516,
47535..47537,47544..47546)
/gene="metS"
/locus_tag="BSU00380"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:239199"
gene 47706..48473
/gene="yabD"
/locus_tag="BSU00390"
/db_xref="GeneID:936949"
CDS 47706..48473
/gene="yabD"
/locus_tag="BSU00390"
/EC_number="3.1.21.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 10747959, 16014871; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="metal-dependent DNase"
/protein_id="NP_387920.1"
/db_xref="GI:16077107"
/db_xref="GeneID:936949"
/translation="MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTIT
RAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKS
PKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAE
VARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNE
PSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN"
misc_feature 47706..48470
/gene="yabD"
/locus_tag="BSU00390"
/note="Predicted metal-dependent hydrolases with the
TIM-barrel fold [General function prediction only];
Region: COG1099"
/db_xref="CDD:224024"
misc_feature 47709..48464
/gene="yabD"
/locus_tag="BSU00390"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:238635"
misc_feature order(47721..47723,47727..47729,48087..48089,48162..48164,
48312..48314)
/gene="yabD"
/locus_tag="BSU00390"
/note="active site"
/db_xref="CDD:238635"
gene 48629..49942
/gene="yabE"
/locus_tag="BSU00400"
/db_xref="GeneID:936891"
CDS 48629..49942
/gene="yabE"
/locus_tag="BSU00400"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15774001, 19047346; Product type pe:
enzyme"
/codon_start=1
/transl_table=11
/product="cell wall shaping enzyme"
/protein_id="NP_387921.1"
/db_xref="GI:16077108"
/db_xref="GeneID:936891"
/translation="MGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKV
ILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDE
DKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQD
QIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDK
IKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEG
KLKKHFEVVKENGKEVSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVV
SRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVH
VEGYGYAIAADTGSAIKGNKIDVFFPEKSSAYRWGNKTVKIKILN"
misc_feature 48770..49648
/gene="yabE"
/locus_tag="BSU00400"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3583"
/db_xref="CDD:226111"
misc_feature 48833..48961
/gene="yabE"
/locus_tag="BSU00400"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 49004..49132
/gene="yabE"
/locus_tag="BSU00400"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 49175..49303
/gene="yabE"
/locus_tag="BSU00400"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 49340..49576
/gene="yabE"
/locus_tag="BSU00400"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:219434"
misc_feature 49613..49933
/gene="yabE"
/locus_tag="BSU00400"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3584"
/db_xref="CDD:226112"
gene 50087..50647
/gene="rnmV"
/locus_tag="BSU00410"
/db_xref="GeneID:937001"
CDS 50087..50647
/gene="rnmV"
/locus_tag="BSU00410"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11233981, 11976317,
12794188, 16077031; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="ribonuclease M5"
/protein_id="NP_387922.1"
/db_xref="GI:16077109"
/db_xref="GeneID:937001"
/translation="MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRL
AQKTRGVIILTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASVES
IRACLENVHEEMEAQPSDISAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQK
RLQMFQIKKSDFMSALDTVMREEQNE"
misc_feature 50090..50617
/gene="rnmV"
/locus_tag="BSU00410"
/note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334"
/db_xref="CDD:232924"
misc_feature 50093..50326
/gene="rnmV"
/locus_tag="BSU00410"
/note="TOPRIM_ RNase M5_like: The topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain found in
Ribonuclease M5: (RNase M5) and other small primase-like
proteins from bacteria and archaea. RNase M5 catalyzes
the maturation of 5S rRNA in low...; Region:
TOPRIM_RNase_M5_like; cd01027"
/db_xref="CDD:173777"
misc_feature order(50114..50119,50126..50128,50252..50254,50258..50260,
50264..50266)
/gene="rnmV"
/locus_tag="BSU00410"
/note="putative active site [active]"
/db_xref="CDD:173777"
misc_feature order(50114..50116,50252..50254)
/gene="rnmV"
/locus_tag="BSU00410"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:173777"
misc_feature 50360..50614
/gene="rnmV"
/locus_tag="BSU00410"
/note="Domain of unknown function (DUF4093); Region:
DUF4093; pfam13331"
/db_xref="CDD:205511"
gene 50640..51518
/gene="ksgA"
/locus_tag="BSU00420"
/db_xref="GeneID:936358"
CDS 50640..51518
/gene="ksgA"
/locus_tag="BSU00420"
/EC_number="2.1.1.-"
/function="16.8: Protect"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the transfer of a total of four methyl
groups from S-adenosyl-l-methionine (S-AdoMet) to two
adjacent adenosine bases A1518 and A1519 in 16S rRNA;
mutations in ksgA causes resistance to the translation
initiation inhibitor kasugamycin"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="NP_387923.1"
/db_xref="GI:16077110"
/db_xref="GeneID:936358"
/translation="MNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHA
EVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILKDTLSPYENVTVIHQD
VLKADVKSVIEEQFQDCDEIMVVANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVAE
RMAADPSSKEYGSLSIAVQFYTEAKTVMIVPKTVFVPQPNVDSAVIRLILRDGPAVDV
ENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIEQVLEETNIDGKRRGESLS
IEEFAALSNGLYKALF"
misc_feature 50658..51512
/gene="ksgA"
/locus_tag="BSU00420"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature 50793..51104
/gene="ksgA"
/locus_tag="BSU00420"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(50802..50822,50868..50873,50940..50948,51018..51020)
/gene="ksgA"
/locus_tag="BSU00420"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 51680..52552
/gene="yabG"
/locus_tag="BSU00430"
/db_xref="GeneID:937005"
CDS 51680..52552
/gene="yabG"
/locus_tag="BSU00430"
/function="16.5: Explore"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10714992, 11040425,
16751597, 19060142; Product type cp: cell process"
/codon_start=1
/transl_table=11
/product="sporulation-specific protease"
/protein_id="NP_387924.1"
/db_xref="GI:16077111"
/db_xref="GeneID:937005"
/translation="MQFQIGDMVARKSYQMDVLFRIIGIEQTSKGNSIAILHGDEVRL
IADSDFSDLVAVKKDEQMMRKKKDESRMNESLELLRQDYKLLREKQEYYATSQYQHQE
HYFHMPGKVLHLDGDEAYLKKCLNVYKKIGVPVYGIHCHEKKMSASIEVLLDKYRPDI
LVITGHDAYSKQKGGIDDLNAYRHSKHFVETVQTARKKIPHLDQLVIFAGACQSHFES
LIRAGANFASSPSRVNIHALDPVYIVAKISFTPFMERINVWEVLRNTLTREKGLGGIE
TRGVLRIGMPYKSN"
misc_feature 51689..52540
/gene="yabG"
/locus_tag="BSU00430"
/note="sporulation peptidase YabG; Region: spore_yabG;
TIGR02855"
/db_xref="CDD:234032"
gene 52763..53023
/gene="veg"
/locus_tag="BSU00440"
/db_xref="GeneID:936744"
CDS 52763..53023
/gene="veg"
/locus_tag="BSU00440"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function; PubMedId: 12761295"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387925.1"
/db_xref="GI:16077112"
/db_xref="GeneID:936744"
/translation="MAKTLSDIKRSLDGNLGKRLTLKANGGRRKTIERSGILAETYPS
VFVIQLDQDENSFERVSYSYADILTETVELTFNDDAASSVAF"
misc_feature 52763..52990
/gene="veg"
/locus_tag="BSU00440"
/note="Protein of unknown function (DUF1021); Region:
DUF1021; pfam06257"
/db_xref="CDD:218961"
gene 53183..53368
/gene="sspF"
/locus_tag="BSU00450"
/db_xref="GeneID:936996"
CDS 53183..53368
/gene="sspF"
/locus_tag="BSU00450"
/function="16.5: Explore"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11092849, 7959056,
8982008; Product type cp: cell process"
/codon_start=1
/transl_table=11
/product="small acid-soluble spore protein"
/protein_id="NP_387926.1"
/db_xref="GI:16077113"
/db_xref="GeneID:936996"
/translation="MGRRRGVMSDEFKYELAKDLGFYDTVKNGGWGEIRARDAGNMVK
RAIEIAEQQMAQNQNNR"
misc_feature 53210..53347
/gene="sspF"
/locus_tag="BSU00450"
/note="Small, acid-soluble spore proteins, alpha/beta
type; Region: SASP; pfam00269"
/db_xref="CDD:215831"
gene 53516..54385
/gene="ipk"
/locus_tag="BSU00460"
/db_xref="GeneID:936970"
CDS 53516..54385
/gene="ipk"
/locus_tag="BSU00460"
/EC_number="2.7.1.148"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="An essential enzyme in the nonmevalonate pathway of
isopentenyl diphosphate and dimethylallyl diphosphate
biosynthesis"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="NP_387927.1"
/db_xref="GI:16077114"
/db_xref="GeneID:936970"
/translation="MRILEKAPAKINLSLDVTRKRPDGYHEVEMIMTTIDLADRIELT
ELAEDEVRVSSHNRFVPDDQRNLAYQAAKLIKDRYNVKKGVSIMITKVIPVAAGLAGG
SSDAAATLRGLNRLWNLNLSAETLAELGAEIGSDVSFCVYGGTALATGRGEKIKHIST
PPHCWVILAKPTIGVSTAEVYRALKLDGIEHPDVQGMIEAIEEKSFQKMCSRLGNVLE
SVTLDMHPEVAMIKNQMKRFGADAVLMSGSGPTVFGLVQYESKVQRIYNGLRGFCDQV
YAVRMIGEQNALD"
misc_feature 53516..54373
/gene="ipk"
/locus_tag="BSU00460"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00128"
/db_xref="CDD:234652"
misc_feature 54104..54340
/gene="ipk"
/locus_tag="BSU00460"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:219894"
gene 54441..55298
/gene="purR"
/locus_tag="BSU00470"
/db_xref="GeneID:937000"
CDS 54441..55298
/gene="purR"
/locus_tag="BSU00470"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11591660, 12837783,
12837784, 15629952, 16163456; Product type r: regulator"
/codon_start=1
/transl_table=11
/product="pur operon repressor"
/protein_id="NP_387928.1"
/db_xref="GI:16077115"
/db_xref="GeneID:937000"
/translation="MKFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDL
TIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLANPERILPGGY
VYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVR
KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINL
LDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLRFFKDN
LLKNGETES"
misc_feature 54441..55253
/gene="purR"
/locus_tag="BSU00470"
/note="pur operon repressor; Provisional; Region:
PRK09213"
/db_xref="CDD:236414"
misc_feature 54450..54659
/gene="purR"
/locus_tag="BSU00470"
/note="Bacterial purine repressor, N-terminal; Region:
PuR_N; pfam09182"
/db_xref="CDD:150015"
misc_feature 54792..55166
/gene="purR"
/locus_tag="BSU00470"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(54852..54854,54858..54860,55047..55055,55059..55073,
55143..55145)
/gene="purR"
/locus_tag="BSU00470"
/note="active site"
/db_xref="CDD:206754"
gene 55295..55672
/gene="yabJ"
/locus_tag="BSU00480"
/db_xref="GeneID:936988"
CDS 55295..55672
/gene="yabJ"
/locus_tag="BSU00480"
/function="16.3: Control"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12515541, 14729707, 10557275,
10919400, 10368157; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387929.1"
/db_xref="GI:16077116"
/db_xref="GeneID:936988"
/translation="MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNG
DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPAR
SCVEVARLPKDALVEIEVIALVK"
misc_feature 55343..55660
/gene="yabJ"
/locus_tag="BSU00480"
/note="YjgF, YER057c, and UK114 belong to a large family
of proteins present in bacteria, archaea, and eukaryotes
with no definitive function. The conserved domain is
similar in structure to chorismate mutase but there is no
sequence similarity and no...; Region:
YjgF_YER057c_UK114_family; cd00448"
/db_xref="CDD:100004"
misc_feature order(55343..55348,55355..55357,55361..55363,55370..55372,
55376..55378,55382..55387,55502..55504,55508..55513,
55517..55519,55523..55525,55556..55558,55565..55567,
55592..55615,55643..55645,55649..55651,55655..55657)
/gene="yabJ"
/locus_tag="BSU00480"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100004"
misc_feature order(55343..55345,55544..55546,55556..55558,55598..55600,
55643..55645)
/gene="yabJ"
/locus_tag="BSU00480"
/note="putative active site [active]"
/db_xref="CDD:100004"
gene 55866..56159
/gene="spoVG"
/locus_tag="BSU00490"
/db_xref="GeneID:936959"
CDS 55866..56159
/gene="spoVG"
/locus_tag="BSU00490"
/function="16.13: Shape"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="stage V sporulation protein G; essential for spore
formation and a negative regulator of asymmetric septation
in Bacillus; involved in methicillin-resistance, biofilm
formation and capsular polysaccharide synthesis in
Staphylococcus"
/codon_start=1
/transl_table=11
/product="regulatory protein SpoVG"
/protein_id="NP_387930.1"
/db_xref="GI:16077117"
/db_xref="GeneID:936959"
/translation="MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLF
VAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS"
misc_feature 55866..56156
/gene="spoVG"
/locus_tag="BSU00490"
/note="regulatory protein SpoVG; Reviewed; Region:
PRK13259"
/db_xref="CDD:183925"
gene 56352..57722
/gene="glmU"
/locus_tag="BSU00500"
/db_xref="GeneID:936139"
CDS 56352..57722
/gene="glmU"
/locus_tag="BSU00500"
/EC_number="2.7.7.23"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="forms a homotrimer; catalyzes the acetylation of
glucosamine-1-phosphate and uridylation of
N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc;
function in cell wall synthesis"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="NP_387931.1"
/db_xref="GI:16077118"
/db_xref="GeneID:936139"
/translation="MDKRFAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDEALKL
SLSKLVTIVGHGAEEVKKQLGDKSEYALQAKQLGTAHAVKQAQPFLADEKGVTIVICG
DTPLLTAETMEQMLKEHTQREAKATILTAVAEDPTGYGRIIRSENGAVQKIVEHKDAS
EEERLVTEINTGTYCFDNEALFRAIDQVSNDNAQGEYYLPDVIEILKNEGETVAAYQT
GNFQETLGVNDRVALSQAEQFMKERINKRHMQNGVTLIDPMNTYISPDAVIGSDTVIY
PGTVIKGEVQIGEDTIIGPHTEIMNSAIGSRTVIKQSVVNHSKVGNDVNIGPFAHIRP
DSVIGNEVKIGNFVEIKKTQFGDRSKASHLSYVGDAEVGTDVNLGCGSITVNYDGKNK
YLTKIEDGAFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGKALAIARARQVNKDDYV
KNIHKK"
misc_feature 56355..57719
/gene="glmU"
/locus_tag="BSU00500"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14354"
/db_xref="CDD:184643"
misc_feature 56367..57050
/gene="glmU"
/locus_tag="BSU00500"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(56376..56384,56505..56507,56586..56588,56595..56597,
56652..56654,56658..56660)
/gene="glmU"
/locus_tag="BSU00500"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(56658..56660,57033..57035)
/gene="glmU"
/locus_tag="BSU00500"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 57105..57680
/gene="glmU"
/locus_tag="BSU00500"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(57348..57350,57396..57398,57402..57404,57438..57440,
57447..57449,57480..57491,57504..57512,57525..57527,
57555..57557,57561..57566,57615..57620,57669..57671)
/gene="glmU"
/locus_tag="BSU00500"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(57348..57350,57396..57398,57402..57404,57438..57440,
57447..57449,57480..57488,57507..57509,57525..57527)
/gene="glmU"
/locus_tag="BSU00500"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(57489..57491,57504..57506,57510..57512,57561..57566,
57615..57620,57669..57671)
/gene="glmU"
/locus_tag="BSU00500"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 57745..58698
/gene="prs"
/locus_tag="BSU00510"
/db_xref="GeneID:936985"
CDS 57745..58698
/gene="prs"
/locus_tag="BSU00510"
/EC_number="2.7.6.1"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of 5-phospho-alpha-D-ribose
1-phosphate from D-ribose 5-phosphate and ATP"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="NP_387932.1"
/db_xref="GI:16077119"
/db_xref="GeneID:936985"
/translation="MSNQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDG
EVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYAR
QDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEY
FEGKNLEDIVIVSPDHGGVTRARKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGK
TAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVT
NSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEQQSVSYLFS"
misc_feature 57772..58692
/gene="prs"
/locus_tag="BSU00510"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:234929"
misc_feature 57772..58122
/gene="prs"
/locus_tag="BSU00510"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:222383"
misc_feature 58204..58578
/gene="prs"
/locus_tag="BSU00510"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(58267..58269,58273..58275,58414..58422,58426..58440,
58510..58512)
/gene="prs"
/locus_tag="BSU00510"
/note="active site"
/db_xref="CDD:206754"
gene 58783..59397
/gene="ctc"
/locus_tag="BSU00520"
/db_xref="GeneID:936984"
CDS 58783..59397
/gene="ctc"
/locus_tag="BSU00520"
/function="16.2: Construct biomass (Anabolism)"
/function="16.6: Maintain"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="the Ctc family of proteins consists of two types,
one that contains the N-terminal ribosomal protein L25
domain only which in Escherichia coli binds the 5S rRNA
while a subset of proteins contain a C-terminal extension
that is involved in the stress response"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25"
/protein_id="NP_387933.1"
/db_xref="GI:16077120"
/db_xref="GeneID:936984"
/translation="MATLTAKERTDFTRSSLRNIRTSGHVPGIIYGKDTGNKPVSLDS
VELIKTLRDEGKNAVITLEVSGEKHSVMVTDLQTDPLKNEITHADFQVVNMSEDIEVE
VPIHLTGEAIGVKNGGVLQQPLYALTVKAKPKAIPQTIEADISSLDVNEVLTIADLPA
GGDYSFNHESDEVVASILPPQQQEAAEVDEEESADAQPEGENEQ"
misc_feature 58789..59055
/gene="ctc"
/locus_tag="BSU00520"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature 58792..59319
/gene="ctc"
/locus_tag="BSU00520"
/note="ribosomal protein L25, Ctc-form; Region: ctc_TL5;
TIGR00731"
/db_xref="CDD:233106"
misc_feature order(58807..58809,58831..58839,58843..58845,58873..58881,
58891..58893,59002..59007,59011..59013,59041..59043,
59047..59049,59053..59055)
/gene="ctc"
/locus_tag="BSU00520"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(58879..58881,58954..58956,58990..58992,59002..59004,
59053..59055)
/gene="ctc"
/locus_tag="BSU00520"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(58996..59001,59008..59010,59029..59031,59053..59055)
/gene="ctc"
/locus_tag="BSU00520"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 59504..60070
/gene="pth"
/locus_tag="BSU00530"
/db_xref="GeneID:936740"
CDS 59504..60070
/gene="pth"
/locus_tag="BSU00530"
/EC_number="3.1.1.29"
/function="16.8: Protect"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Enables the recycling of peptidyl-tRNAs produced at
termination of translation"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="NP_387934.1"
/db_xref="GI:16077121"
/db_xref="GeneID:936740"
/translation="MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNG
LYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRL
RTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEE
AVDKSVKACEASLSKPFLEVMNEFNAKV"
misc_feature 59510..60022
/gene="pth"
/locus_tag="BSU00530"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:238259"
misc_feature order(59528..59530,59558..59560,59693..59698,59774..59776,
59834..59836)
/gene="pth"
/locus_tag="BSU00530"
/note="putative active site [active]"
/db_xref="CDD:238259"
misc_feature 59558..59560
/gene="pth"
/locus_tag="BSU00530"
/note="catalytic residue [active]"
/db_xref="CDD:238259"
gene 60130..60360
/gene="yabK"
/locus_tag="BSU00540"
/db_xref="GeneID:936978"
CDS 60130..60360
/gene="yabK"
/locus_tag="BSU00540"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387935.1"
/db_xref="GI:16077122"
/db_xref="GeneID:936978"
/translation="MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYK
ENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ"
misc_feature 60130..60357
/gene="yabK"
/locus_tag="BSU00540"
/note="Protein of unknown function (DUF2757); Region:
DUF2757; pfam10955"
/db_xref="CDD:151402"
gene 60430..63963
/gene="mfd"
/locus_tag="BSU00550"
/db_xref="GeneID:936653"
CDS 60430..63963
/gene="mfd"
/locus_tag="BSU00550"
/function="16.6: Maintain"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11065368, 16950921,
8594198, 9535092; Product type f: factor"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="NP_387936.1"
/db_xref="GI:16077123"
/db_xref="GeneID:936653"
/translation="MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSA
LANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQ
RLDVINRLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEV
GYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETL
TSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHANISHDKERLSE
GQTDQELVKYLSYFYEKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLL
EEGKILHDIRLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQ
MNVLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKKALVQGQVYI
MEGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAERIKSYSELQIGDYVVH
INHGIGKYLGIETLEINGIHKDYLNIHYQGSDKLYVPVEQIDQVQKYVGSEGKEPKLY
KLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFPYQE
TEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTT
ILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD
VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSV
IETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLV
PDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKM
GLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
LTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEIDVELDAY
IPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVY
ARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKKLKISIQ
TKGRSADEWLDTVLGMLKGLKDVKKQTISST"
misc_feature 60472..63945
/gene="mfd"
/locus_tag="BSU00550"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:224118"
misc_feature 61924..62217
/gene="mfd"
/locus_tag="BSU00550"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:215001"
misc_feature 62362..62772
/gene="mfd"
/locus_tag="BSU00550"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 62389..62403
/gene="mfd"
/locus_tag="BSU00550"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 62683..62694
/gene="mfd"
/locus_tag="BSU00550"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 62851..63240
/gene="mfd"
/locus_tag="BSU00550"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(62947..62958,63022..63027,63100..63108)
/gene="mfd"
/locus_tag="BSU00550"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(63124..63126,63190..63192,63202..63204,63211..63213)
/gene="mfd"
/locus_tag="BSU00550"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature 63499..63795
/gene="mfd"
/locus_tag="BSU00550"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 64099..64635
/gene="spoVT"
/locus_tag="BSU00560"
/db_xref="GeneID:936975"
CDS 64099..64635
/gene="spoVT"
/locus_tag="BSU00560"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15063493, 15939023,
16159768, 18996130, 8755877; Product type r: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_387937.1"
/db_xref="GI:16077124"
/db_xref="GeneID:936975"
/translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEV
ILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEML
ERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEV
EHKAVETAAGFLARQMEQ"
misc_feature 64102..64629
/gene="spoVT"
/locus_tag="BSU00560"
/note="stage V sporulation protein T; Region: spore_V_T;
TIGR02851"
/db_xref="CDD:131898"
misc_feature 64120..64248
/gene="spoVT"
/locus_tag="BSU00560"
/note="looped-hinge helix DNA binding domain, AbrB family;
Region: lp_hng_hel_AbrB; TIGR01439"
/db_xref="CDD:200102"
gene 64817..66415
/gene="yabM"
/locus_tag="BSU00570"
/db_xref="GeneID:936539"
CDS 64817..66415
/gene="yabM"
/locus_tag="BSU00570"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="exporter"
/protein_id="NP_387938.1"
/db_xref="GI:16077125"
/db_xref="GeneID:936539"
/translation="MDDSIGVKRHWIWQGAFVLILAGVITKILSAVYRVPFQNIVGDV
GFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALFLSLIGILLF
LCLYLGAVPIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMT
EQFLRVAVLLGLSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQT
DRQNENVITTKELTKKLLLYSVTICVSSLLLLFIQLVDALNLYALLSGGEASEEAKCL
KGIYDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTG
ASAGLICILKPVNIMLFQNGEGTGALQVFSCSILFASLAVTAAAVLQGAGYTVFPAIA
VGAGVAVKWVLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLDKLRGVLIP
IIGSALLMSAVLLAYTRLWTFLFPATGRGAAVIESLSAVAIGGAVFIYCMMRLGIFTD
EELNSVPFGSKLSKFMRRREQNGG"
misc_feature 64838..66331
/gene="yabM"
/locus_tag="BSU00570"
/note="Membrane protein involved in the export of
O-antigen and teichoic acid [General function prediction
only]; Region: RfbX; COG2244"
/db_xref="CDD:225153"
misc_feature 64865..66130
/gene="yabM"
/locus_tag="BSU00570"
/note="Stage V sporulation protein B, also known as Stage
III sporulation protein F, and related proteins; Region:
MATE_SpoVB_like; cd13124"
/db_xref="CDD:240529"
gene 66405..67874
/gene="yabN"
/locus_tag="BSU00580"
/db_xref="GeneID:936973"
CDS 66405..67874
/gene="yabN"
/locus_tag="BSU00580"
/function="16.6: Maintain"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 11178267; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="fusion methylase and nucleotide
pyrophosphohydrolase"
/protein_id="NP_387939.1"
/db_xref="GI:16077126"
/db_xref="GeneID:936973"
/translation="MAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDHPLIEE
LEKETKNIRFFDDIYEKHDQFEAVYEEIADILFEAARREDVVYAVPGHPFVAEKTVQL
LTERQEKENVQVKVAGGQSFLDATFNVLQIDPIEGFQFVDAGTLSADELELRHHLIIC
QVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSRGEEIRTVPLFELDRNVALNNLTSV
YIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAID
EEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQ
DENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDI
WEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFR
RRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS"
misc_feature 66405..67865
/gene="yabN"
/locus_tag="BSU00580"
/note="Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only]; Region: COG3956"
/db_xref="CDD:226465"
misc_feature 66414..67073
/gene="yabN"
/locus_tag="BSU00580"
/note="N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins; Region:
YabN_N; cd11723"
/db_xref="CDD:212509"
misc_feature order(66438..66440,66672..66680,66687..66692,66765..66770,
66882..66884,66966..66968,66972..66977,67047..67055)
/gene="yabN"
/locus_tag="BSU00580"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212509"
misc_feature order(66456..66467,66471..66473,66678..66695,66705..66710,
66714..66719,66750..66752,66756..66767,66771..66776,
66783..66788,66822..66836)
/gene="yabN"
/locus_tag="BSU00580"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212509"
misc_feature 67104..67445
/gene="yabN"
/locus_tag="BSU00580"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature order(67107..67112,67119..67121,67173..67178,67185..67187,
67194..67199,67206..67211,67218..67220,67227..67229,
67242..67244,67251..67256,67263..67280,67284..67286,
67293..67295,67320..67322,67329..67343,67347..67355,
67359..67364)
/gene="yabN"
/locus_tag="BSU00580"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature order(67203..67205,67212..67214,67260..67262,67269..67271)
/gene="yabN"
/locus_tag="BSU00580"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature 67548..67853
/gene="yabN"
/locus_tag="BSU00580"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature order(67548..67556,67590..67595,67611..67616,67650..67658,
67662..67670,67674..67679,67683..67685,67704..67712,
67719..67721,67725..67754,67761..67766,67773..67775,
67818..67820,67827..67829,67839..67841)
/gene="yabN"
/locus_tag="BSU00580"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature order(67554..67562,67587..67589,67599..67601,67608..67610,
67644..67646,67656..67661,67668..67670)
/gene="yabN"
/locus_tag="BSU00580"
/note="active site"
/db_xref="CDD:212136"
misc_feature order(67596..67601,67608..67610,67656..67661,67668..67670)
/gene="yabN"
/locus_tag="BSU00580"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
misc_feature order(67599..67601,67608..67610,67659..67661,67668..67670)
/gene="yabN"
/locus_tag="BSU00580"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212136"
gene 67877..68137
/gene="yabO"
/locus_tag="BSU00590"
/db_xref="GeneID:936800"
CDS 67877..68137
/gene="yabO"
/locus_tag="BSU00590"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 10675343, 10675344; Product type pf:
factor"
/codon_start=1
/transl_table=11
/product="ribosomal RNA binding protein; heat shock
protein"
/protein_id="NP_387940.1"
/db_xref="GI:16077127"
/db_xref="GeneID:936800"
/translation="MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPG
DELTVRFGQKLVTVQVNELKDTTKKEEAANMYTILKEEKLGE"
misc_feature 67877..68050
/gene="yabO"
/locus_tag="BSU00590"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(67880..67882,67916..67921,67925..67930,67934..67939,
67946..67951,67955..67957,67976..67981,67982..67996,
68000..68002)
/gene="yabO"
/locus_tag="BSU00590"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 68216..68518
/gene="yabP"
/locus_tag="BSU00600"
/db_xref="GeneID:936966"
CDS 68216..68518
/gene="yabP"
/locus_tag="BSU00600"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11283287, 15231775,
10869437; Product type f: factor"
/codon_start=1
/transl_table=11
/product="spore protein"
/protein_id="NP_387941.1"
/db_xref="GI:16077128"
/db_xref="GeneID:936966"
/translation="MNSYYDQKGSSSVPEQHDVTMKGRKHLDISGVKHVESFDNEEFL
LETVMGMLSVRGQNLQMKNLDVEKGIVSIKGRVFDLVYLDEQQGDKAKGFFSKLFK"
misc_feature 68264..68515
/gene="yabP"
/locus_tag="BSU00600"
/note="sporulation protein YabP; Region: spore_yabP;
TIGR02892"
/db_xref="CDD:234051"
gene 68515..69150
/gene="yabQ"
/locus_tag="BSU00610"
/db_xref="GeneID:936971"
CDS 68515..69150
/gene="yabQ"
/locus_tag="BSU00610"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11283287, 15849754,
16850406, 10869437; Product type f: factor"
/codon_start=1
/transl_table=11
/product="membrane protein of the forespore"
/protein_id="NP_387942.1"
/db_xref="GI:16077129"
/db_xref="GeneID:936971"
/translation="MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIH
DILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLV
VSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFP
IRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR"
misc_feature 68518..68907
/gene="yabQ"
/locus_tag="BSU00610"
/note="spore cortex biosynthesis protein YabQ; Region:
spore_yabQ; TIGR02893"
/db_xref="CDD:131939"
gene 69168..69545
/gene="divIC"
/locus_tag="BSU00620"
/db_xref="GeneID:936786"
CDS 69168..69545
/gene="divIC"
/locus_tag="BSU00620"
/function="16.9: Replicate"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11283287, 11994149,
12682299, 16936019; Product type f: factor"
/codon_start=1
/transl_table=11
/product="cell-division initiation protein"
/protein_id="NP_387943.1"
/db_xref="GI:16077130"
/db_xref="GeneID:936786"
/translation="MNFSRERTITEIQNDYKEQVERQNQLKKRRRKGLYRRLTVFGAL
VFLTAIVLASSVWSQTSSLSAKEEKKEQLEKELKSLKTKQTDLKEEISKLKDEDYVTE
LARRDLFMSGDGEIIFNVEKKSK"
misc_feature 69198..69542
/gene="divIC"
/locus_tag="BSU00620"
/note="Septum formation initiator [Cell division and
chromosome partitioning]; Region: COG2919"
/db_xref="CDD:225471"
misc_feature <69423..69536
/gene="divIC"
/locus_tag="BSU00620"
/note="Septum formation initiator; Region: DivIC;
pfam04977"
/db_xref="CDD:203138"
gene 69626..70012
/gene="yabR"
/locus_tag="BSU00630"
/db_xref="GeneID:936574"
CDS 69626..70012
/gene="yabR"
/locus_tag="BSU00630"
/function="16.6: Maintain"
/function="16.3: Control"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15066026, 16014871, 9862121; Product
type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387944.1"
/db_xref="GI:16077131"
/db_xref="GeneID:936574"
/translation="MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVK
DINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFL
KDSEDRLSSLKRNTESKRGGRGARRG"
misc_feature 69626..70009
/gene="yabR"
/locus_tag="BSU00630"
/note="hypothetical protein; Provisional; Region:
PRK08582"
/db_xref="CDD:236305"
misc_feature 69641..69847
/gene="yabR"
/locus_tag="BSU00630"
/note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_hs4; cd05692"
/db_xref="CDD:240197"
misc_feature order(69665..69667,69689..69691,69719..69721,69725..69727)
/gene="yabR"
/locus_tag="BSU00630"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240197"
gene 70181..70257
/gene="trnSL-Met1"
/locus_tag="BSU_tRNA_10"
/db_xref="GeneID:936631"
tRNA 70181..70257
/gene="trnSL-Met1"
/locus_tag="BSU_tRNA_10"
/product="tRNA-Met"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936631"
gene 70267..70338
/gene="trnSL-Glu1"
/locus_tag="BSU_tRNA_11"
/db_xref="GeneID:2914278"
tRNA 70267..70338
/gene="trnSL-Glu1"
/locus_tag="BSU_tRNA_11"
/product="tRNA-Glu"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914278"
gene 70538..73021
/gene="spoIIE"
/locus_tag="BSU00640"
/db_xref="GeneID:938480"
CDS 70538..73021
/gene="spoIIE"
/locus_tag="BSU00640"
/EC_number="3.1.3.16"
/function="16.3: Control"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10747015, 12180929,
15126482, 15866939, 15978076; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="serine phosphatase"
/protein_id="NP_387945.1"
/db_xref="GI:16077132"
/db_xref="GeneID:938480"
/translation="MEKAERRVNGPMAGQALEKLQSFFNRGTKLVTHHLHSLFFYKGF
IYVVIGFLLGRAFILSEVLPFALPFFGAMLLIRRDKAFYAVLAVLAGALTISPKHSLL
ILAALLAFFVFSKVAAFITDDRVKALPIVVFFSMAAARAGFVYAQNGVFTTYDYVMAI
VEAGLSFILTLIFLQSLPIFTVKKVKQSLKIEEIICFMILIASVLTGLAGLSYQGMQA
EHILARYVVLSFSFIGGASIGCTVGVVTGLILGLANIGNLYQMSLLAFSGLLGGLLKE
GKKAGAAIGLIVGSLLISLYGEGSAGLMTTLYESLIAVCLFLLTPQSITRKVARYIPG
TVEHLQEQQQYARKIRDVTAQKVDQFSNVFHALSESFATFYQASDEQTDDSEVDLFLS
KITEHSCQTCYKKNRCWVQNFDKTYDLMKQVMLETEEKEYASNRRLKKEFQQYCSKSK
QVEELIEDELAHHHAHLTLKKKVQDSRRLVAEQLLGVSEVMADFSREIKREREQHFLQ
EEQIIEALQHFGIEIQHVEIYSLEQGNIDIEMTIPFSGHGESEKIIAPMLSDILEEQI
LVKAEQHSPHPNGYSHVAFGSTKSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAA
AISDGMGNGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRTTDEIYSTLDL
SIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQLKAGDL
LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMT
VVVVRIDHNTPKWASIPVPAIFQNKQEIS"
misc_feature 70667..72952
/gene="spoIIE"
/locus_tag="BSU00640"
/note="stage II sporulation protein E; Region: spore_II_E;
TIGR02865"
/db_xref="CDD:234038"
misc_feature 71504..>71827
/gene="spoIIE"
/locus_tag="BSU00640"
/note="Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence...; Region: PP2Cc; cl00120"
/db_xref="CDD:241624"
misc_feature 72389..72952
/gene="spoIIE"
/locus_tag="BSU00640"
/note="Stage II sporulation protein E (SpoIIE); Region:
SpoIIE; pfam07228"
/db_xref="CDD:219343"
gene 73106..73843
/gene="yabS"
/locus_tag="BSU00650"
/db_xref="GeneID:936965"
CDS 73106..73843
/gene="yabS"
/locus_tag="BSU00650"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387946.1"
/db_xref="GI:16077133"
/db_xref="GeneID:936965"
/translation="MNNGHLNQILLITDGCSNHGEDPLAMAAFAKEQGITVNVIGIME
ENQIDPEAMKEVEGIALAGGGVHQVVYASQLSQTVQMVTKKAMTQTLQGVVNQELKQI
LGKNVEMEELSPEKRGEVMEVVDELGETVHLQVLVLVDTSASMAPKLPTVKEALIDLS
VSLNSRIGNNEFAMCIFPGKKQEVELVLNWTPKLQSLSTLFAKLSTGGITPTGPAIRE
ATLQFEKIRSRRGMLADDERRFDEFGM"
misc_feature <73106..73840
/gene="yabS"
/locus_tag="BSU00650"
/note="Uncharacterized protein containing a von Willebrand
factor type A (vWA) domain [General function prediction
only]; Region: COG2304"
/db_xref="CDD:225187"
misc_feature <73106..73342
/gene="yabS"
/locus_tag="BSU00650"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:241578"
misc_feature 73508..>73798
/gene="yabS"
/locus_tag="BSU00650"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:238119"
misc_feature order(73523..73525,73733..73735)
/gene="yabS"
/locus_tag="BSU00650"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:238119"
gene 73809..74825
/gene="yabT"
/locus_tag="BSU00660"
/db_xref="GeneID:936964"
CDS 73809..74825
/gene="yabT"
/locus_tag="BSU00660"
/EC_number="2.7.11.1"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="serine/threonine-protein kinase"
/protein_id="NP_387947.2"
/db_xref="GI:50812174"
/db_xref="GeneID:936964"
/translation="MMNDALTSLACSLKPGTTIKGKWNGNTYTLRKQLGKGANGIVYL
AETSDGHVALKVSDDSLSITSEVNVLKSFSKAQSVTMGPSFFDTDDAYIPSANTKVSF
YAMEYIKGPLLLKYVSDKGAEWIPVLMIQLLSSLSVLHQQGWIFGDLKPDNLIVTGPP
ARIRCIDVGGTTKEGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMINSVHKKE
FKKTNQPKEQLRSLIEGNPLLQKYKKALFSALNGDYQSADEMKKDMLDAGQKAAQRKQ
PIKASPQPATRQRQQKPRQGKITKTRYTPKQKPAKSGGLFETTLIVISVLALYFAYII
FFLI"
misc_feature 73890..>74693
/gene="yabT"
/locus_tag="BSU00660"
/note="Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair]; Region: SPS1; COG0515"
/db_xref="CDD:223589"
misc_feature 73908..74438
/gene="yabT"
/locus_tag="BSU00660"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:245201"
misc_feature order(73908..73922,73932..73934,73965..73967,73971..73973,
74043..74045,74121..74132,74142..74144,74148..74150,
74250..74252,74256..74258,74262..74267,74271..74273,
74307..74309,74316..74318,74370..74381)
/gene="yabT"
/locus_tag="BSU00660"
/note="active site"
/db_xref="CDD:173623"
misc_feature order(73908..73922,73932..73934,73965..73967,73971..73973,
74043..74045,74121..74132,74142..74144,74250..74252,
74256..74258,74262..74267,74271..74273,74307..74309)
/gene="yabT"
/locus_tag="BSU00660"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature order(73920..73922,74142..74144,74148..74150,74250..74252,
74256..74258,74262..74264,74316..74318,74370..74381)
/gene="yabT"
/locus_tag="BSU00660"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature order(74304..74324,74370..74381)
/gene="yabT"
/locus_tag="BSU00660"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene 74929..76347
/gene="tilS"
/locus_tag="BSU00670"
/db_xref="GeneID:936922"
CDS 74929..76347
/gene="tilS"
/locus_tag="BSU00670"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 12682299, 14527414, 16039592, 17005971; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="tRNAile lysidine synthetase"
/protein_id="NP_387948.1"
/db_xref="GI:16077135"
/db_xref="GeneID:936922"
/translation="MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRS
ANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAAR
DCRYQFFEEIMSKHQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR
IIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKR
FQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLIL
NYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKN
VPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKA
GDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVI
PNSDRIVLQYRQHEKCRGQAKS"
misc_feature 74929..75663
/gene="tilS"
/locus_tag="BSU00670"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:223115"
misc_feature 74983..75546
/gene="tilS"
/locus_tag="BSU00670"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:238950"
misc_feature order(74995..75003,75007..75018,75079..75081,75085..75087)
/gene="tilS"
/locus_tag="BSU00670"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238950"
misc_feature 75700..75903
/gene="tilS"
/locus_tag="BSU00670"
/note="TilS substrate binding domain; Region: TilS;
pfam09179"
/db_xref="CDD:204159"
misc_feature 76081..76296
/gene="tilS"
/locus_tag="BSU00670"
/note="TilS substrate C-terminal domain; Region: TilS_C;
smart00977"
/db_xref="CDD:198045"
gene 76344..76886
/gene="hprT"
/locus_tag="BSU00680"
/db_xref="GeneID:936945"
CDS 76344..76886
/gene="hprT"
/locus_tag="BSU00680"
/EC_number="2.4.2.8"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 3110131, 6408059; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="hypoxanthine-guanine phosphoribosyltransferase"
/protein_id="NP_387949.1"
/db_xref="GI:16077136"
/db_xref="GeneID:936945"
/translation="MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKG
ALPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDII
DSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDY
AERYRNLPYIGVLKPAVYES"
misc_feature 76401..76775
/gene="hprT"
/locus_tag="BSU00680"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(76467..76469,76473..76475,76638..76646,76650..76664,
76734..76736)
/gene="hprT"
/locus_tag="BSU00680"
/note="active site"
/db_xref="CDD:206754"
gene 76984..78897
/gene="ftsH"
/locus_tag="BSU00690"
/db_xref="GeneID:938094"
CDS 76984..78897
/gene="ftsH"
/locus_tag="BSU00690"
/EC_number="3.4.24.-"
/function="16.9: Replicate"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10851010, 10913836,
12533473, 9076729, 9084181, 9287010, 9352926; Product type
e: enzyme"
/codon_start=1
/transl_table=11
/product="cell-division protein and general stress
protein"
/protein_id="NP_387950.1"
/db_xref="GI:16077137"
/db_xref="GeneID:938094"
/translation="MNRVFRNTIFYLLILLVVIGVVSYFQTSNPKTENMSYSTFIKNL
DDGKVDSVSVQPVRGVYEVKGQLKNYDKDQYFLTHVPEGKGADQIFNALKKTDVKVEP
AQETSGWVTFLTTIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSKAKLYTEEKKRVKF
KDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEA
GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG
HDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVI
GREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDAR
DIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQ
AGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIAR
RMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYE
RAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGTLPERNFSDDEKNDDVKVNI
LTKTEEKKDDTKE"
misc_feature 77050..77298
/gene="ftsH"
/locus_tag="BSU00690"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:219052"
misc_feature 77374..78789
/gene="ftsH"
/locus_tag="BSU00690"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:233327"
misc_feature 77473..77970
/gene="ftsH"
/locus_tag="BSU00690"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 77584..77607
/gene="ftsH"
/locus_tag="BSU00690"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(77587..77610,77761..77763,77902..77904)
/gene="ftsH"
/locus_tag="BSU00690"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 77749..77766
/gene="ftsH"
/locus_tag="BSU00690"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 77944..77946
/gene="ftsH"
/locus_tag="BSU00690"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 78151..78783
/gene="ftsH"
/locus_tag="BSU00690"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:216502"
gene 79092..79868
/gene="coaX"
/locus_tag="BSU00700"
/db_xref="GeneID:936960"
CDS 79092..79868
/gene="coaX"
/locus_tag="BSU00700"
/EC_number="2.7.1.33"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="type III; catalyzes the formation of
(R)-4'-phosphopantothenate from (R)-pantothenate in
coenzyme A biosynthesis; type III pantothenate kinases are
not subject to feedback inhibition from coenzyme A and
have a high Km for ATP"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="NP_387951.2"
/db_xref="GI:255767018"
/db_xref="GeneID:936960"
/translation="MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILR
SLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYDN
PKEVGADRIVNAVAAIHLYGNPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEA
LYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVI
ATGGLAPLIANESDCIDIVDPFLTLKGLELIYERNRVGSV"
misc_feature 79098..79631
/gene="coaX"
/locus_tag="BSU00700"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(79107..79118,79122..79124,79128..79130,79416..79418,
79476..79487)
/gene="coaX"
/locus_tag="BSU00700"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 79880..80755
/gene="hslO"
/locus_tag="BSU00710"
/db_xref="GeneID:936762"
CDS 79880..80755
/gene="hslO"
/locus_tag="BSU00710"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="becomes active under oxidative stress; four
conserved cysteines bind a zinc atom when they are in the
reduced state and the enzyme is inactive; oxidative stress
results in oxidized cysteines, release of zinc, and
binding of Hsp33 to aggregation-prone proteins; forms
dimers and higher order oligomers"
/codon_start=1
/transl_table=11
/product="heat shock protein 33"
/protein_id="NP_387952.1"
/db_xref="GI:16077139"
/db_xref="GeneID:936762"
/translation="MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGR
TMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNEQG
KLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVG
VLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEV
LGEKPEILETMPVRFHCPCSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYL
FTKEELEGLRDQTTR"
misc_feature 79880..80743
/gene="hslO"
/locus_tag="BSU00710"
/note="Hsp33-like chaperonin; Reviewed; Region: hslO;
PRK00114"
/db_xref="CDD:234643"
misc_feature 79889..80713
/gene="hslO"
/locus_tag="BSU00710"
/note="Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat...; Region: Hsp33;
cd00498"
/db_xref="CDD:238278"
misc_feature order(79922..79924,80315..80317,80327..80335,80411..80413,
80582..80584)
/gene="hslO"
/locus_tag="BSU00710"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238278"
misc_feature order(79922..79924,80393..80395,80399..80401,80411..80422)
/gene="hslO"
/locus_tag="BSU00710"
/note="domain crossover interface; other site"
/db_xref="CDD:238278"
misc_feature order(80582..80584,80588..80590,80681..80683,80690..80692)
/gene="hslO"
/locus_tag="BSU00710"
/note="redox-dependent activation switch; other site"
/db_xref="CDD:238278"
gene 80802..81695
/gene="yacD"
/locus_tag="BSU00720"
/db_xref="GeneID:936955"
CDS 80802..81695
/gene="yacD"
/locus_tag="BSU00720"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15187182, 15856219; Product type pf:
factor"
/codon_start=1
/transl_table=11
/product="protein secretion PrsA"
/protein_id="NP_387953.1"
/db_xref="GI:16077140"
/db_xref="GeneID:936955"
/translation="MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGG
KSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNN
SFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIR
HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYI
EEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKA
TVKTLWKEADVSWFYGEKSTK"
misc_feature 80829..81656
/gene="yacD"
/locus_tag="BSU00720"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:234605"
misc_feature 81204..81584
/gene="yacD"
/locus_tag="BSU00720"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
gene 81771..82697
/gene="cysK"
/locus_tag="BSU00730"
/db_xref="GeneID:936636"
CDS 81771..82697
/gene="cysK"
/locus_tag="BSU00730"
/EC_number="2.5.1.47"
/function="16.3: Control"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11390694, 16267287,
16513748; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="NP_387954.1"
/db_xref="GI:16077141"
/db_xref="GeneID:936636"
/translation="MVRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSV
KDRIGLAMIEAAEKEGKLKAGNTIIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSME
RRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEKHGYFVPQQFNNPSNPEIHRQTTGK
EIVEQFGDDQLDAFVAGIGTGGTITGAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGP
HKIQGIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAAL
QVAKKLGKGKKVLAIIPSNGERYLSTPLYQFD"
misc_feature 81780..82676
/gene="cysK"
/locus_tag="BSU00730"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:223110"
misc_feature 81807..82673
/gene="cysK"
/locus_tag="BSU00730"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(81819..81827,81864..81866,81882..81884,81888..81890,
82014..82016,82023..82025,82071..82076,82083..82088,
82095..82100,82260..82265,82539..82547,82551..82559,
82629..82631,82659..82661,82668..82670)
/gene="cysK"
/locus_tag="BSU00730"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(81903..81905,81993..81995,82302..82319,82437..82439,
82569..82571,82647..82652)
/gene="cysK"
/locus_tag="BSU00730"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 81903..81905
/gene="cysK"
/locus_tag="BSU00730"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 82864..84276
/gene="pabB"
/locus_tag="BSU00740"
/db_xref="GeneID:936926"
CDS 82864..84276
/gene="pabB"
/locus_tag="BSU00740"
/EC_number="2.6.1.85"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 16605270, 17114263, 2123867, 9084182; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="4-amino-4-deoxychorismate synthase"
/protein_id="NP_387955.1"
/db_xref="GI:16077142"
/db_xref="GeneID:936926"
/translation="MAQRRPAGKKIPFQKDSFLQQFEKLAQSRKHHVLLESARGGRYS
IAGLDPIATVKGKDGITTIKHGDEMLFKEGDPLRAFHSWFKTLETETNHEFPDFQGGA
IGFLSYDYARYIENFKMLSLDDLETPDIYFLVFDDIAVYDHQEESLWLITHVNGSDQE
TADVKLSELEQMWLTELPAVTSREMKPETAGSFAAPFTEDGFSQAVEKIKQYIASGDV
FQVNLSIRQSQSLSVHPYQIYKTLREVNPSPYMAYLETPDFQIICGSPELLVSKKGKL
LETRPIAGTRSRGKTNEEDEALANELIHNEKERAEHVMLVDLERNDLGRVSRYGSVRV
NEFMAIEKYSHVMHIVSNVQGELQDGYDAVDIIHAVFPGGTITGAPKVRTMEIIEELE
PTRRGLYTGSIGWFGYNHDLQFNIVIRTIYATGGQAFMQSGAGVVIDSVPKHEYKESF
KKAFAMQRALELSEEETKIR"
misc_feature 82909..84267
/gene="pabB"
/locus_tag="BSU00740"
/note="Anthranilate/para-aminobenzoate synthases component
I [Amino acid transport and metabolism / Coenzyme
metabolism]; Region: TrpE; COG0147"
/db_xref="CDD:223225"
misc_feature 82927..83313
/gene="pabB"
/locus_tag="BSU00740"
/note="Anthranilate synthase component I, N terminal
region; Region: Anth_synt_I_N; pfam04715"
/db_xref="CDD:218224"
misc_feature 83455..84219
/gene="pabB"
/locus_tag="BSU00740"
/note="chorismate binding enzyme; Region: Chorismate_bind;
pfam00425"
/db_xref="CDD:215913"
gene 84290..84874
/gene="pabA"
/locus_tag="BSU00750"
/db_xref="GeneID:936441"
CDS 84290..84874
/gene="pabA"
/locus_tag="BSU00750"
/EC_number="2.6.1.85"
/EC_number="4.1.3.27"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="amphibolic enzyme subunit from Bacillus subtilis
performs both in anthranilate and para-aminobenzoate
synthesis"
/codon_start=1
/transl_table=11
/product="para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II"
/protein_id="NP_387956.1"
/db_xref="GI:16077143"
/db_xref="GeneID:936441"
/translation="MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSP
DFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHG
KTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDL
PIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA"
misc_feature 84290..84844
/gene="pabA"
/locus_tag="BSU00750"
/note="para-aminobenzoate synthase component II;
Provisional; Region: PRK08857"
/db_xref="CDD:181566"
misc_feature 84293..84844
/gene="pabA"
/locus_tag="BSU00750"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Anthranilate synthase; Region:
GATase1_Anthranilate_Synthase; cd01743"
/db_xref="CDD:153214"
misc_feature order(84440..84445,84449..84451,84524..84529,84536..84538,
84668..84679)
/gene="pabA"
/locus_tag="BSU00750"
/note="glutamine binding [chemical binding]; other site"
/db_xref="CDD:153214"
misc_feature order(84524..84526,84791..84793,84797..84799)
/gene="pabA"
/locus_tag="BSU00750"
/note="catalytic triad [active]"
/db_xref="CDD:153214"
gene 84874..85755
/gene="pabC"
/locus_tag="BSU00760"
/db_xref="GeneID:936944"
CDS 84874..85755
/gene="pabC"
/locus_tag="BSU00760"
/EC_number="4.1.3.38"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of 4-aminobenzoate and
pyruvate from 4-amino-4-deoxychorismate"
/codon_start=1
/transl_table=11
/product="4-amino-4-deoxychorismate lyase"
/protein_id="NP_387957.1"
/db_xref="GI:16077144"
/db_xref="GeneID:936944"
/translation="MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLD
WHIERLERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDKGFV
AQTYDKPTVLCFVNQLKPESLPLQKEGKVLSIRRNTPEGSFRLKSHHYLNNMYAKREI
GNDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLDTGILDGVTRRFIIENAKDI
GLELKTGRYELEALLTADEAWMTNSVLEIIPFTKIEEVNYGSQSGEATSALQLLYKKE
IKNMIHEKGGRAWRSTQ"
misc_feature 84874..85704
/gene="pabC"
/locus_tag="BSU00760"
/note="Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism];
Region: IlvE; COG0115"
/db_xref="CDD:223193"
misc_feature 84931..85692
/gene="pabC"
/locus_tag="BSU00760"
/note="ADCL_like: 4-Amino-4-deoxychorismate lyase: is a
member of the fold-type IV of PLP dependent enzymes that
converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most...; Region:
ADCL_like; cd01559"
/db_xref="CDD:238800"
misc_feature order(85018..85020,85309..85311,85408..85410)
/gene="pabC"
/locus_tag="BSU00760"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:238800"
misc_feature 85309..85311
/gene="pabC"
/locus_tag="BSU00760"
/note="catalytic residue [active]"
/db_xref="CDD:238800"
gene 85737..86594
/gene="sul"
/locus_tag="BSU00770"
/db_xref="GeneID:936256"
CDS 85737..86594
/gene="sul"
/locus_tag="BSU00770"
/EC_number="2.5.1.15"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 11007651, 2123867; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="dihydropteroate synthase"
/protein_id="NP_387958.1"
/db_xref="GI:16077145"
/db_xref="GeneID:936256"
/translation="MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKY
DSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVP
ISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYND
LLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPV
LLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAM
LNKGGVHHG"
misc_feature 85809..86558
/gene="sul"
/locus_tag="BSU00770"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:238380"
misc_feature 85812..86564
/gene="sul"
/locus_tag="BSU00770"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:233439"
misc_feature order(85830..85832,86052..86054,86109..86111,86115..86117,
86184..86186,86301..86303,86397..86399,86409..86411,
86511..86513,86517..86519)
/gene="sul"
/locus_tag="BSU00770"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238380"
misc_feature order(86340..86342,86352..86357,86469..86471,86481..86483,
86493..86495,86538..86543)
/gene="sul"
/locus_tag="BSU00770"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238380"
misc_feature 86403..86411
/gene="sul"
/locus_tag="BSU00770"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:238380"
gene 86587..86949
/gene="folB"
/locus_tag="BSU00780"
/db_xref="GeneID:937976"
CDS 86587..86949
/gene="folB"
/locus_tag="BSU00780"
/EC_number="4.1.2.25"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 16188473, 17176045, 17388809; Product type e :
enzyme"
/codon_start=1
/transl_table=11
/product="dihydroneopterin aldolase"
/protein_id="NP_387959.1"
/db_xref="GI:16077146"
/db_xref="GeneID:937976"
/translation="MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQT
DDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDP
PIPGHYKSVAIEITRKKS"
misc_feature 86587..86940
/gene="folB"
/locus_tag="BSU00780"
/note="Dihydroneopterin aldolase (DHNA) and
7,8-dihydroneopterin triphosphate epimerase domain
(DHNTPE); these enzymes have been designated folB and
folX, respectively. Folate derivatives are essential
cofactors in the biosynthesis of purines, pyrimidines,
and...; Region: DHNA_DHNTPE; cd00534"
/db_xref="CDD:238298"
misc_feature order(86590..86622,86638..86664,86887..86892,86905..86931)
/gene="folB"
/locus_tag="BSU00780"
/note="homooctamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238298"
misc_feature order(86632..86640,86647..86649,86794..86805,86881..86883,
86923..86925)
/gene="folB"
/locus_tag="BSU00780"
/note="active site"
/db_xref="CDD:238298"
gene 86946..87449
/gene="folK"
/locus_tag="BSU00790"
/db_xref="GeneID:936940"
CDS 86946..87449
/gene="folK"
/locus_tag="BSU00790"
/EC_number="2.7.6.3"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 17029412; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="7,
8-dihydro-6-hydroxymethylpterin-pyrophosphokinase"
/protein_id="NP_387960.1"
/db_xref="GI:16077147"
/db_xref="GeneID:936940"
/translation="MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYET
DPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREVRWGPRTADLDILLF
NRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVD
EFVHSES"
misc_feature 86958..87341
/gene="folK"
/locus_tag="BSU00790"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:238269"
misc_feature order(86973..86975,87075..87080,87084..87086,87108..87110,
87114..87116,87159..87161,87171..87173,87180..87182,
87195..87197,87201..87203,87213..87215,87222..87224,
87231..87233,87237..87242,87282..87284,87291..87296,
87309..87311,87315..87317)
/gene="folK"
/locus_tag="BSU00790"
/note="catalytic center binding site [active]"
/db_xref="CDD:238269"
misc_feature order(87159..87161,87171..87173,87180..87182,87195..87197,
87201..87203,87222..87224,87237..87242,87282..87284,
87291..87296,87309..87311)
/gene="folK"
/locus_tag="BSU00790"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238269"
gene 87401..87610
/gene="yazB"
/locus_tag="BSU00800"
/db_xref="GeneID:936295"
CDS 87401..87610
/gene="yazB"
/locus_tag="BSU00800"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_387961.1"
/db_xref="GI:16077148"
/db_xref="GeneID:936295"
/translation="MEAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRL
PSAAIIQDAADVLNISADELAPPEK"
misc_feature 87419..>87607
/gene="yazB"
/locus_tag="BSU00800"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature 87419..87592
/gene="yazB"
/locus_tag="BSU00800"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(87431..87433,87443..87445,87518..87520)
/gene="yazB"
/locus_tag="BSU00800"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(87440..87442,87515..87517)
/gene="yazB"
/locus_tag="BSU00800"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(87461..87466,87497..87499,87506..87508,87518..87523)
/gene="yazB"
/locus_tag="BSU00800"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 87634..88635
/gene="dusB"
/locus_tag="BSU00810"
/db_xref="GeneID:936924"
CDS 87634..88635
/gene="dusB"
/locus_tag="BSU00810"
/EC_number="1.-.-.-"
/function="16.2: Construct biomass (Anabolism)"
/function="16.3: Control"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 11983710, 15698474; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase B"
/protein_id="NP_387962.1"
/db_xref="GI:16077149"
/db_xref="GeneID:936924"
/translation="MFKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVS
DKAILYNNARTMGMLYIDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGC
PVPKITKCDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAV
ERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDET
GVDGVMIGRAALGNPWMIYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENV
AVREMRKHAAWYLKGVKGNANVRNEINHCETREEFVQLLDAFTVEVEAKELQNAKVG"
misc_feature 87643..88602
/gene="dusB"
/locus_tag="BSU00810"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature 87667..88365
/gene="dusB"
/locus_tag="BSU00810"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:239200"
misc_feature order(87679..87687,87757..87759,87844..87846,87928..87930,
88054..88056,88144..88146,88237..88239,88243..88245,
88309..88314)
/gene="dusB"
/locus_tag="BSU00810"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239200"
misc_feature order(87844..87846,87937..87942,88054..88056,88060..88062,
88141..88146,88150..88155,88240..88245,88312..88314)
/gene="dusB"
/locus_tag="BSU00810"
/note="active site"
/db_xref="CDD:239200"
misc_feature order(87937..87939,88060..88062,88144..88146,88150..88152)
/gene="dusB"
/locus_tag="BSU00810"
/note="catalytic residues [active]"
/db_xref="CDD:239200"
misc_feature order(87940..87942,88054..88056,88141..88143,88153..88155,
88240..88245)
/gene="dusB"
/locus_tag="BSU00810"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239200"
gene 88727..90226
/gene="lysS"
/locus_tag="BSU00820"
/db_xref="GeneID:936911"
CDS 88727..90226
/gene="lysS"
/locus_tag="BSU00820"
/EC_number="6.1.1.6"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="class II; LysRS2; catalyzes a two-step reaction,
first charging a lysine molecule by linking its carboxyl
group to the alpha-phosphate of ATP, followed by transfer
of the aminoacyl-adenylate to its tRNA; in Methanosarcina
barkeri, LysRS2 charges both tRNA molecules for lysine
that exist in this organism and in addition can charge the
tRNAPyl with lysine in the presence of LysRS1"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="NP_387963.1"
/db_xref="GI:16077150"
/db_xref="GeneID:936911"
/translation="MSQEEHNHEELNDQLQVRRDKMNQLRDNGIDPFGARFERTHQSQ
EVISAYQDLTKEELEEKAIEVTIAGRMMTKRGKGKAGFAHLQDLEGQIQIYVRKDSVG
DDQYEIFKSSDLGDLIGVTGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVE
QRYRQRYLDLIVNPDSKHTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARP
FITHHNALDIPLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIEL
YEAYADYKDIMSLTENLVAHIAQEVLGTTTIQYGEEQIDLKPEWKRIHMVDAVKEATG
VDFWEEVTVEQAREYAKEHEVEIKDSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEI
SPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREAGNDEAH
LMDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPQMRQR"
misc_feature 88751..90223
/gene="lysS"
/locus_tag="BSU00820"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:234778"
misc_feature 88916..89236
/gene="lysS"
/locus_tag="BSU00820"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:239817"
misc_feature order(88931..88936,88985..88990,89075..89077,89153..89155,
89162..89170)
/gene="lysS"
/locus_tag="BSU00820"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239817"
misc_feature order(88943..88945,88949..88954,88970..88972,89003..89005,
89009..89011,89063..89065,89105..89107,89123..89125)
/gene="lysS"
/locus_tag="BSU00820"
/note="putative anticodon binding site; other site"
/db_xref="CDD:239817"
misc_feature 89243..90220
/gene="lysS"
/locus_tag="BSU00820"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:238398"
misc_feature 89339..89353
/gene="lysS"
/locus_tag="BSU00820"
/note="motif 1; other site"
/db_xref="CDD:238398"
misc_feature order(89435..89437,89501..89503,89507..89509,89525..89527,
89537..89539,89954..89956,89975..89977,89984..89986,
89996..89998,90152..90154)
/gene="lysS"
/locus_tag="BSU00820"
/note="active site"
/db_xref="CDD:238398"
misc_feature 89498..89509
/gene="lysS"
/locus_tag="BSU00820"
/note="motif 2; other site"
/db_xref="CDD:238398"
misc_feature 90143..90154
/gene="lysS"
/locus_tag="BSU00820"
/note="motif 3; other site"
/db_xref="CDD:238398"
gene 90536..92089
/gene="rrnJ-16S"
/locus_tag="BSU_rRNA_6"
/db_xref="GeneID:936409"
rRNA 90536..92089
/gene="rrnJ-16S"
/locus_tag="BSU_rRNA_6"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936409"
gene 92254..95181
/gene="rrnJ-23S"
/locus_tag="BSU_rRNA_7"
/db_xref="GeneID:936612"
rRNA 92254..95181
/gene="rrnJ-23S"
/locus_tag="BSU_rRNA_7"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936612"
gene 95237..95354
/gene="rrnJ-5S"
/locus_tag="BSU_rRNA_8"
/db_xref="GeneID:936652"
rRNA 95237..95354
/gene="rrnJ-5S"
/locus_tag="BSU_rRNA_8"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936652"
gene 95375..95450
/gene="trnJ-Val"
/locus_tag="BSU_tRNA_12"
/db_xref="GeneID:936902"
tRNA 95375..95450
/gene="trnJ-Val"
/locus_tag="BSU_tRNA_12"
/product="tRNA-Val"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936902"
gene 95455..95530
/gene="trnJ-Thr"
/locus_tag="BSU_tRNA_13"
/db_xref="GeneID:936811"
tRNA 95455..95530
/gene="trnJ-Thr"
/locus_tag="BSU_tRNA_13"
/product="tRNA-Thr"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936811"
gene 95567..95642
/gene="trnJ-Lys"
/locus_tag="BSU_tRNA_14"
/db_xref="GeneID:936901"
tRNA 95567..95642
/gene="trnJ-Lys"
/locus_tag="BSU_tRNA_14"
/product="tRNA-Lys"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936901"
gene 95649..95731
/gene="trnJ-Leu1"
/locus_tag="BSU_tRNA_15"
/db_xref="GeneID:2914251"
tRNA 95649..95731
/gene="trnJ-Leu1"
/locus_tag="BSU_tRNA_15"
/product="tRNA-Leu"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914251"
gene 95772..95846
/gene="trnJ-Gly"
/locus_tag="BSU_tRNA_16"
/db_xref="GeneID:936900"
tRNA 95772..95846
/gene="trnJ-Gly"
/locus_tag="BSU_tRNA_16"
/product="tRNA-Gly"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936900"
gene 95861..95946
/gene="trnJ-Leu2"
/locus_tag="BSU_tRNA_17"
/db_xref="GeneID:2914249"
tRNA 95861..95946
/gene="trnJ-Leu2"
/locus_tag="BSU_tRNA_17"
/product="tRNA-Leu"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914249"
gene 95956..96032
/gene="trnJ-Arg"
/locus_tag="BSU_tRNA_18"
/db_xref="GeneID:936780"
tRNA 95956..96032
/gene="trnJ-Arg"
/locus_tag="BSU_tRNA_18"
/product="tRNA-Arg"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936780"
gene 96060..96136
/gene="trnJ-Pro"
/locus_tag="BSU_tRNA_19"
/db_xref="GeneID:936611"
tRNA 96060..96136
/gene="trnJ-Pro"
/locus_tag="BSU_tRNA_19"
/product="tRNA-Pro"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936611"
gene 96146..96221
/gene="trnJ-Ala"
/locus_tag="BSU_tRNA_20"
/db_xref="GeneID:2914268"
tRNA 96146..96221
/gene="trnJ-Ala"
/locus_tag="BSU_tRNA_20"
/product="tRNA-Ala"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914268"
gene 96392..97945
/gene="rrnW-16S"
/locus_tag="BSU_rRNA_9"
/db_xref="GeneID:936880"
rRNA 96392..97945
/gene="rrnW-16S"
/locus_tag="BSU_rRNA_9"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936880"
gene 98110..101037
/gene="rrnW-23S"
/locus_tag="BSU_rRNA_10"
/db_xref="GeneID:936651"
rRNA 98110..101037
/gene="rrnW-23S"
/locus_tag="BSU_rRNA_10"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:936651"
gene 101093..101211
/gene="rrnW-5S"
/locus_tag="BSU_rRNA_11"
/db_xref="GeneID:2914266"
rRNA 101093..101211
/gene="rrnW-5S"
/locus_tag="BSU_rRNA_11"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914266"
gene 101449..101913
/gene="ctsR"
/locus_tag="BSU00830"
/db_xref="GeneID:936883"
CDS 101449..101913
/gene="ctsR"
/locus_tag="BSU00830"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11069659, 12618461,
16163393, 9852015; Product type r: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_387964.1"
/db_xref="GI:16077151"
/db_xref="GeneID:936883"
/translation="MGHNISDIIEQYLKRVLDQNGKEILEIKRSEIADKFQCVPSQIN
YVINTRFTSERGYIVESKRGGGGYIRIIKIKMNNEVVLINNIISQINTHLSQAASDDI
ILRLLEDKVISEREAKMMVSVMDRSVLHIDLPERDELRARMMKAMLTSLKLK"
misc_feature 101455..101904
/gene="ctsR"
/locus_tag="BSU00830"
/note="Firmicute transcriptional repressor of class III
stress genes (CtsR); Region: CtsR; pfam05848"
/db_xref="CDD:147806"
gene 101927..102484
/gene="mcsA"
/locus_tag="BSU00840"
/db_xref="GeneID:936845"
CDS 101927..102484
/gene="mcsA"
/locus_tag="BSU00840"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16163393; Product type f:
factor"
/codon_start=1
/transl_table=11
/product="activator of protein kinase McsB"
/protein_id="NP_387965.1"
/db_xref="GI:16077152"
/db_xref="GeneID:936845"
/translation="MICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISA
NQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSEC
YKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFEN
AAHVRDQIRLLEQSLKSTDSEEEQE"
misc_feature 101927..102466
/gene="mcsA"
/locus_tag="BSU00840"
/note="Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms]; Region: COG3880"
/db_xref="CDD:226397"
misc_feature 102341..102445
/gene="mcsA"
/locus_tag="BSU00840"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 102484..103575
/gene="mcsB"
/locus_tag="BSU00850"
/db_xref="GeneID:936939"
CDS 102484..103575
/gene="mcsB"
/locus_tag="BSU00850"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 16163393, 17380125; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="ATP:guanido phosphotransferase"
/protein_id="NP_387966.1"
/db_xref="GI:16077153"
/db_xref="GeneID:936939"
/translation="MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTR
YSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESP
FGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQ
RGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVG
NIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGV
LSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRP
NERDIRRAALIRERLHLEMNGKRQEDESI"
misc_feature 102493..103527
/gene="mcsB"
/locus_tag="BSU00850"
/note="ATP:guanido phosphotransferase; Provisional;
Region: PRK01059"
/db_xref="CDD:234894"
misc_feature 102547..103245
/gene="mcsB"
/locus_tag="BSU00850"
/note="Phosphagen (guanidino) kinases found in bacteria;
Region: bacterial_phosphagen_kinase; cd07930"
/db_xref="CDD:153077"
misc_feature order(102562..102564,102568..102570,102574..102576,
102757..102759,102832..102834,102856..102858,
103009..103011,103015..103023,103102..103104,
103108..103110,103114..103119,103147..103149)
/gene="mcsB"
/locus_tag="BSU00850"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:153077"
misc_feature order(102844..102846,102982..102984,103120..103125)
/gene="mcsB"
/locus_tag="BSU00850"
/note="phosphagen binding site; other site"
/db_xref="CDD:153077"
misc_feature order(103093..103137,103141..103158)
/gene="mcsB"
/locus_tag="BSU00850"
/note="substrate specificity loop; other site"
/db_xref="CDD:153077"
gene 103572..106004
/gene="clpC"
/locus_tag="BSU00860"
/db_xref="GeneID:938481"
CDS 103572..106004
/gene="clpC"
/locus_tag="BSU00860"
/function="16.6: Maintain"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12354604, 15529410,
16525504; Product type f: factor"
/codon_start=1
/transl_table=11
/product="class III stress response-related ATPase"
/protein_id="NP_387967.1"
/db_xref="GI:16077154"
/db_xref="GeneID:938481"
/translation="MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEG
IAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSY
VGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA
EGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIIL
FIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF
QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI
DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR
EQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS
RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE
ESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHP
DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNH
KDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLS
IELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVED
GEFVVKTTAKTN"
misc_feature 103584..105995
/gene="clpC"
/locus_tag="BSU00860"
/note="ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones]; Region: clpA; COG0542"
/db_xref="CDD:223616"
misc_feature 103620..103778
/gene="clpC"
/locus_tag="BSU00860"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 103848..104000
/gene="clpC"
/locus_tag="BSU00860"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 104118..104576
/gene="clpC"
/locus_tag="BSU00860"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 104193..104216
/gene="clpC"
/locus_tag="BSU00860"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(104196..104219,104406..104408,104517..104519)
/gene="clpC"
/locus_tag="BSU00860"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 104394..104411
/gene="clpC"
/locus_tag="BSU00860"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 104568..104570
/gene="clpC"
/locus_tag="BSU00860"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 104820..104927
/gene="clpC"
/locus_tag="BSU00860"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature 105177..105575
/gene="clpC"
/locus_tag="BSU00860"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 105204..105227
/gene="clpC"
/locus_tag="BSU00860"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(105207..105230,105420..105422,105546..105548)
/gene="clpC"
/locus_tag="BSU00860"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 105408..105425
/gene="clpC"
/locus_tag="BSU00860"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 105711..105980
/gene="clpC"
/locus_tag="BSU00860"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 106096..107472
/gene="radA"
/locus_tag="BSU00870"
/db_xref="GeneID:936872"
CDS 106096..107472
/gene="radA"
/locus_tag="BSU00870"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Sms; stabilizes the strand-invasion intermediate
during the DNA repair; involved in recombination of donor
DNA and plays an important role in DNA damage repair after
exposure to mutagenic agents"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="NP_387968.1"
/db_xref="GI:16077155"
/db_xref="GeneID:936872"
/translation="MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPAN
RRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGI
GKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHV
TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTE
VLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNR
VSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADC
FIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAE
ALRTSLGG"
misc_feature 106096..107454
/gene="radA"
/locus_tag="BSU00870"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:236994"
misc_feature 106117..107238
/gene="radA"
/locus_tag="BSU00870"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:238541"
misc_feature 106387..106410
/gene="radA"
/locus_tag="BSU00870"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:238541"
misc_feature order(106390..106392,106402..106410,106465..106467,
106471..106473,106615..106620)
/gene="radA"
/locus_tag="BSU00870"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238541"
misc_feature 106606..106617
/gene="radA"
/locus_tag="BSU00870"
/note="Walker B motif; other site"
/db_xref="CDD:238541"
misc_feature <107176..107385
/gene="radA"
/locus_tag="BSU00870"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
gene 107476..108558
/gene="yacK"
/locus_tag="BSU00880"
/db_xref="GeneID:936868"
CDS 107476..108558
/gene="yacK"
/locus_tag="BSU00880"
/function="16.6: Maintain"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="non-specific DNA-binding; scans chromosomes during
sporulation for DNA-damage; delays initiation of
sporulation; participates in a checkpoint signaling
cascade for cell-cycle progression and DNA repair"
/codon_start=1
/transl_table=11
/product="DNA integrity scanning protein DisA"
/protein_id="NP_387969.1"
/db_xref="GI:16077156"
/db_xref="GeneID:936868"
/translation="MEKEKKGAKHELDLSSILQFVAPGTPLRAGMENVLRANTGGLIV
VGYNDKVKEVVDGGFHINTAFSPAHLYELAKMDGAIILSDSGQKILYANTQLMPDATI
SSSETGMRHRTAERVAKQTGCLVIAISERRNVITLYQENMKYTLKDIGFILTKANQAI
QTLEKYKTILDKTINALNALEFEELVTFSDVLSVMHRYEMVLRIKNEINMYIKELGTE
GHLIKLQVIELITDMEEEAALFIKDYVKEKIKDPFVLLKELQDMSSYDLLDDSIVYKL
LGYPASTNLDDYVLPRGYRLLNKIPRLPMPIVENVVEAFGVLPRIIEASAEELDEVEG
IGEVRAQKIKKGLKRLQEKHYLDRQL"
misc_feature 107512..108555
/gene="yacK"
/locus_tag="BSU00880"
/note="DNA integrity scanning protein DisA; Provisional;
Region: PRK13482"
/db_xref="CDD:237395"
misc_feature 107554..107907
/gene="yacK"
/locus_tag="BSU00880"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
misc_feature 107911..108336
/gene="yacK"
/locus_tag="BSU00880"
/note="DisA bacterial checkpoint controller linker region;
Region: DisA-linker; pfam10635"
/db_xref="CDD:220829"
gene 108674..109774
/gene="yacL"
/locus_tag="BSU00890"
/db_xref="GeneID:936863"
CDS 108674..109774
/gene="yacL"
/locus_tag="BSU00890"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pm: membrane component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_387970.1"
/db_xref="GI:16077157"
/db_xref="GeneID:936863"
/translation="MLKRIVQAFFIIFGGVVGIFLIPELFVLLNIQDIPLITNAYTSA
AIGAIIFFLISIWGTEYVVNWVKWIEDSLLKAPVPDLLFGSLGLVFGLIIAYLIVNVI
PLDNIPYRIFSTIIPVFLAFFLGYLGFQVGFKKKDELISLFSISARMQKKKGTADEEH
EVQDKKLKILDTSVIIDGRIADICQTGFLEGVIVIPQFVLEELQHIADSSDVLKRNRG
RRGLDILNRIQKELDIEVEIYEGDFEDIQEVDSKLVKLAKLTSGVVVTNDFNLNKVCE
LQKVAVLNINDLANAVKPVVLPGEEMNVQVIKDGKEHNQGVAYLDDGTMIVVEEGRNY
IGKHIDVLVTSVLQTAAGRMIFAKPKLLEKAL"
misc_feature 108674..109756
/gene="yacL"
/locus_tag="BSU00890"
/note="Integral membrane protein (PIN domain superfamily)
[General function prediction only]; Region: COG4956"
/db_xref="CDD:227292"
misc_feature 109175..109555
/gene="yacL"
/locus_tag="BSU00890"
/note="PIN domain of Thermus Thermophilus Hb8,
uncharacterized Bacillus subtilis YacL, and other
bacterial homologs; Region: PIN_YacL; cd09877"
/db_xref="CDD:189047"
misc_feature order(109184..109186,109277..109279,109421..109423,
109475..109477)
/gene="yacL"
/locus_tag="BSU00890"
/note="putative active site [active]"
/db_xref="CDD:189047"
gene 109789..110487
/gene="ispD"
/locus_tag="BSU00900"
/db_xref="GeneID:936855"
CDS 109789..110487
/gene="ispD"
/locus_tag="BSU00900"
/EC_number="2.7.7.60"
/inference="ab initio prediction:AMIGene:2.0"
/note="4-diphosphocytidyl-2C-methyl-D-erythritol synthase;
MEP cytidylyltransferase; MCT; catalyzes the formation of
4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and
2-C-methyl-D-erythritol 4-phosphate; involved in
isoprenoid and isopentenyl-PP biosynthesis; forms
homodimers"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase"
/protein_id="NP_387971.1"
/db_xref="GI:16077158"
/db_xref="GeneID:936855"
/translation="MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHR
QCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLV
HDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQDLQVSETIERSSLWAVQT
PQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTS
AEAIMESESGNKHV"
misc_feature 109801..110445
/gene="ispD"
/locus_tag="BSU00900"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature order(109810..109812,109816..109833,109852..109854,
110026..110037,110044..110046,110098..110106,
110413..110415)
/gene="ispD"
/locus_tag="BSU00900"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature order(110107..110109,110164..110166,110188..110190,
110194..110196,110245..110262,110338..110343,
110347..110352,110359..110361,110377..110388,
110398..110403)
/gene="ispD"
/locus_tag="BSU00900"
/note="dimer interface; other site"
/db_xref="CDD:133009"
gene 110480..110956
/gene="ispF"
/locus_tag="BSU00910"
/db_xref="GeneID:936634"
CDS 110480..110956
/gene="ispF"
/locus_tag="BSU00910"
/EC_number="4.6.1.12"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the conversion of
4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate
into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 2,4-cyclo diphosphate
synthase"
/protein_id="NP_387972.1"
/db_xref="GI:16077159"
/db_xref="GeneID:936634"
/translation="MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHT
VADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQ
KPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG"
misc_feature 110486..110944
/gene="ispF"
/locus_tag="BSU00910"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature order(110486..110491,110495..110497,110501..110503,
110507..110515,110525..110527,110630..110632,
110636..110641,110645..110650,110759..110761,
110765..110767,110771..110773,110792..110794,
110798..110800,110864..110866,110870..110875,
110882..110890,110927..110929,110933..110935,
110939..110941)
/gene="ispF"
/locus_tag="BSU00910"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature order(110504..110506,110510..110512,110606..110608)
/gene="ispF"
/locus_tag="BSU00910"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature order(110648..110650,110654..110656,110780..110785,
110789..110800,110873..110881)
/gene="ispF"
/locus_tag="BSU00910"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene 111047..112498
/gene="gltX"
/locus_tag="BSU00920"
/db_xref="GeneID:936862"
CDS 111047..112498
/gene="gltX"
/locus_tag="BSU00920"
/EC_number="6.1.1.17"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="NP_387973.1"
/db_xref="GI:16077160"
/db_xref="GeneID:936862"
/translation="MGNEVRVRYAPSPTGHLHIGNARTALFNYLFARNQGGKFIIRVE
DTDKKRNIEGGEQSQLNYLKWLGIDWDESVDVGGEYGPYRQSERNDIYKVYYEELLEK
GLAYKCYCTEEELEKEREEQIARGEMPRYSGKHRDLTQEEQEKFIAEGRKPSIRFRVP
EGKVIAFNDIVKGEISFESDGIGDFVIVKKDGTPTYNFAVAIDDYLMKMTHVLRGEDH
ISNTPKQIMIYQAFGWDIPQFGHMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEA
LFNFIGLLGWSPVGEEELFTKEQFIEIFDVNRLSKSPALFDMHKLKWVNNQYVKKLDL
DQVVELTLPHLQKAGKVGTELSAEEQEWVRKLISLYHEQLSYGAEIVELTDLFFTDEI
EYNQEAKAVLEEEQVPEVLSTFAAKLEELEEFTPDNIKASIKAVQKETGHKGKKLFMP
IRVAVTGQTHGPELPQSIELIGKETAIQRLKNI"
misc_feature 111047..112492
/gene="gltX"
/locus_tag="BSU00920"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:234953"
misc_feature 111056..>111427
/gene="gltX"
/locus_tag="BSU00920"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(111068..111070,111074..111082,111104..111109,
111113..111118,111176..111178,111371..111373,
111377..111379,111419..111424)
/gene="gltX"
/locus_tag="BSU00920"
/note="active site"
/db_xref="CDD:173905"
misc_feature 111098..111109
/gene="gltX"
/locus_tag="BSU00920"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <111611..112039
/gene="gltX"
/locus_tag="BSU00920"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(111632..111634,111644..111646,111686..111691,
111695..111700,111773..111778,111800..111805)
/gene="gltX"
/locus_tag="BSU00920"
/note="active site"
/db_xref="CDD:173905"
misc_feature 111800..111814
/gene="gltX"
/locus_tag="BSU00920"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 112800..113453
/gene="cysE"
/locus_tag="BSU00930"
/db_xref="GeneID:936831"
CDS 112800..113453
/gene="cysE"
/locus_tag="BSU00930"
/EC_number="2.3.1.30"
/function="16.3: Control"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10939241, 17056751,
10737181, 7510287; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="serine acetyltransferase"
/protein_id="NP_387974.1"
/db_xref="GI:16077161"
/db_xref="GeneID:936831"
/translation="MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHA
LYKRKFYFLARLISQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVF
QGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFST
VVGIPGRVVVQNGKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK"
misc_feature 112815..113300
/gene="cysE"
/locus_tag="BSU00930"
/note="serine O-acetyltransferase; Region: cysE;
TIGR01172"
/db_xref="CDD:200082"
misc_feature <112824..112907
/gene="cysE"
/locus_tag="BSU00930"
/note="Serine acetyltransferase, N-terminal; Region:
SATase_N; cl05762"
/db_xref="CDD:244186"
misc_feature 112992..113294
/gene="cysE"
/locus_tag="BSU00930"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(112995..112997,113001..113003,113046..113048,
113148..113150,113238..113240,113247..113249,
113253..113255)
/gene="cysE"
/locus_tag="BSU00930"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(113043..113048,113103..113108,113124..113129,
113148..113153,113184..113186,113229..113231,
113235..113240,113247..113249,113253..113255,
113277..113279,113292..113294)
/gene="cysE"
/locus_tag="BSU00930"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(113043..113048,113124..113126,113148..113153)
/gene="cysE"
/locus_tag="BSU00930"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(113103..113108,113124..113129,113184..113186,
113229..113231,113235..113240,113247..113249,
113253..113255,113277..113279,113292..113294)
/gene="cysE"
/locus_tag="BSU00930"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene 113450..114850
/gene="cysS"
/locus_tag="BSU00940"
/db_xref="GeneID:936859"
CDS 113450..114850
/gene="cysS"
/locus_tag="BSU00940"
/EC_number="6.1.1.16"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes a two-step reaction; charges a cysteine
by linking its carboxyl group to the alpha-phosphate of
ATP then transfers the aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="NP_387975.1"
/db_xref="GI:16077162"
/db_xref="GeneID:936859"
/translation="MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARP
AIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVG
ALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSI
DELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLG
DQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVL
VHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSST
NLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVI
TAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMN
IILEDTAQGTRWKRGE"
misc_feature 113450..114844
/gene="cysS"
/locus_tag="BSU00940"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:234705"
misc_feature 113459..>113794
/gene="cysS"
/locus_tag="BSU00940"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(113534..113545,113561..113563,113567..113572,
113579..113584,113648..113650,113654..113656)
/gene="cysS"
/locus_tag="BSU00940"
/note="active site"
/db_xref="CDD:173899"
misc_feature 113561..113572
/gene="cysS"
/locus_tag="BSU00940"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <114062..114364
/gene="cysS"
/locus_tag="BSU00940"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 114245..114259
/gene="cysS"
/locus_tag="BSU00940"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 114365..114841
/gene="cysS"
/locus_tag="BSU00940"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:245839"
misc_feature order(114368..114370,114380..114382,114389..114391,
114398..114400,114410..114415,114428..114433,
114554..114556,114575..114577,114584..114586,
114593..114595)
/gene="cysS"
/locus_tag="BSU00940"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(114398..114400,114407..114412,114428..114433,
114593..114595)
/gene="cysS"
/locus_tag="BSU00940"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 114854..115285
/gene="mrnC"
/locus_tag="BSU00950"
/db_xref="GeneID:936369"
CDS 114854..115285
/gene="mrnC"
/locus_tag="BSU00950"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16014871; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="ribonuclease for 23S RNA maturation"
/protein_id="NP_387976.1"
/db_xref="GI:16077163"
/db_xref="GeneID:936369"
/translation="MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPND
LHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYS
TAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT"
misc_feature 114905..115243
/gene="mrnC"
/locus_tag="BSU00950"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:238333"
misc_feature order(114908..114910,114920..114922,115160..115162,
115169..115171)
/gene="mrnC"
/locus_tag="BSU00950"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(114908..114910,115160..115162,115169..115171)
/gene="mrnC"
/locus_tag="BSU00950"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature order(114911..114916,114923..114925,114932..114937,
114944..114949,114953..114961,114986..114988,
115190..115192,115217..115219)
/gene="mrnC"
/locus_tag="BSU00950"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
gene 115269..116018
/gene="rlmB"
/locus_tag="BSU00960"
/db_xref="GeneID:936861"
CDS 115269..116018
/gene="rlmB"
/locus_tag="BSU00960"
/EC_number="2.1.1.-"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 11698387, 16014871; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="23S rRNA methyltransferase"
/protein_id="NP_387977.1"
/db_xref="GI:16077164"
/db_xref="GeneID:936861"
/translation="MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIEL
AKKQGITIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLIL
DELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA
RTLEEMKERGIWVVGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKL
PMAGKVTSLNASVAAGLLMYEVYRKRNPVGE"
misc_feature 115281..116000
/gene="rlmB"
/locus_tag="BSU00960"
/note="rRNA methylase, putative, group 3; Region:
rRNA_methyl_3; TIGR00186"
/db_xref="CDD:129290"
misc_feature 115287..115478
/gene="rlmB"
/locus_tag="BSU00960"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature 115557..115982
/gene="rlmB"
/locus_tag="BSU00960"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:216010"
gene 116025..116537
/gene="yacP"
/locus_tag="BSU00970"
/db_xref="GeneID:936993"
CDS 116025..116537
/gene="yacP"
/locus_tag="BSU00970"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 17114934; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="ribonuclease with PIN and NYN domains"
/protein_id="NP_387978.1"
/db_xref="GI:16077165"
/db_xref="GeneID:936993"
/translation="MDILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYT
GNRVIVVFDAHLVKGLEKKQTNHRVEVIFTKENETADERIEKLAQALNNIATQIHVAT
SDYTEQWAIFGQGALRKSARELLREVETIERRIERRVRKITSEKPAGKIALSEEVLKT
FEKWRRGDLD"
misc_feature 116025..116531
/gene="yacP"
/locus_tag="BSU00970"
/note="Predicted RNA-binding protein containing a PIN
domain [General function prediction only]; Region:
COG3688"
/db_xref="CDD:226213"
gene 116600..117256
/gene="sigH"
/locus_tag="BSU00980"
/db_xref="GeneID:936150"
CDS 116600..117256
/gene="sigH"
/locus_tag="BSU00980"
/EC_number="2.7.7.6"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-70"
/protein_id="NP_387979.1"
/db_xref="GI:16077166"
/db_xref="GeneID:936150"
/translation="MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRN
FVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAI
KTATRQKHIPLNSYASLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMK
MGELLSDLERKVLVLYLDGRSYQEISDELNRHVKSIDNALQRVKRKLEKYLEIREISL
"
misc_feature 116630..117250
/gene="sigH"
/locus_tag="BSU00980"
/note="RNA polymerase factor sigma-70; Validated; Region:
PRK08295"
/db_xref="CDD:181361"
misc_feature 116711..116923
/gene="sigH"
/locus_tag="BSU00980"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 117086..117220
/gene="sigH"
/locus_tag="BSU00980"
/note="Sigma-70, region 4; Region: Sigma70_r4_2;
pfam08281"
/db_xref="CDD:203898"
gene 117349..117498
/gene="rpmG"
/locus_tag="BSU00990"
/db_xref="GeneID:936842"
CDS 117349..117498
/gene="rpmG"
/locus_tag="BSU00990"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="in Escherichia coli BM108, a mutation that results
in lack of L33 synthesis had no effect on ribosome
synthesis or function; there are paralogous genes in
several bacterial genomes, and a CXXC motif for zinc
binding and an upstream regulation region of the paralog
lacking this motif that are regulated by zinc similar to
other ribosomal proteins like L31; the proteins in this
group have the CXXC motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="NP_387980.1"
/db_xref="GI:16077167"
/db_xref="GeneID:936842"
/translation="MRKKITLACKTCGNRNYTTMKSSASAAERLEVKKYCSTCNSHTA
HLETK"
misc_feature 117349..117495
/gene="rpmG"
/locus_tag="BSU00990"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00504"
/db_xref="CDD:234783"
gene 117532..117711
/gene="secE"
/locus_tag="BSU01000"
/db_xref="GeneID:936856"
CDS 117532..117711
/gene="secE"
/locus_tag="BSU01000"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="forms a complex with SecY and SecG; SecYEG forms a
protein-conducting channel to which secA binds and
translocates targeted polypeptides across the cytoplasmic
membrane, a process driven by ATP and a proton-motive
force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="NP_387981.1"
/db_xref="GI:16077168"
/db_xref="GeneID:936856"
/translation="MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFA
LLDTGISQLIRLIVE"
misc_feature 117532..117702
/gene="secE"
/locus_tag="BSU01000"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:236066"
gene 117890..118423
/gene="nusG"
/locus_tag="BSU01010"
/db_xref="GeneID:936851"
CDS 117890..118423
/gene="nusG"
/locus_tag="BSU01010"
/function="16.2: Construct biomass (Anabolism)"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="NP_387982.1"
/db_xref="GI:16077169"
/db_xref="GeneID:936851"
/translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEE
ETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
PGEAETILKRMGMDERKTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNM
FGRETPVELEFTQIDKL"
misc_feature 117890..118420
/gene="nusG"
/locus_tag="BSU01010"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 117899..118228
/gene="nusG"
/locus_tag="BSU01010"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(117908..117910,118010..118012,118070..118072,
118079..118081,118085..118087,118190..118192,
118214..118216)
/gene="nusG"
/locus_tag="BSU01010"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 118250..118417
/gene="nusG"
/locus_tag="BSU01010"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(118286..118300,118307..118309,118343..118345,
118370..118378,118382..118393,118403..118408)
/gene="nusG"
/locus_tag="BSU01010"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 118286..118297
/gene="nusG"
/locus_tag="BSU01010"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 118591..119016
/gene="rplK"
/locus_tag="BSU01020"
/db_xref="GeneID:936838"
CDS 118591..119016
/gene="rplK"
/locus_tag="BSU01020"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="NP_387983.2"
/db_xref="GI:255767019"
/db_xref="GeneID:936838"
/translation="MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
RTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKR
DKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED"
misc_feature 118591..119013
/gene="rplK"
/locus_tag="BSU01020"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 118615..119007
/gene="rplK"
/locus_tag="BSU01020"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(118618..118620,118678..118680,118810..118818,
118828..118830,118849..118851,118924..118926,
118939..118947,118957..118959,118966..118971,
118978..118983,118987..118995)
/gene="rplK"
/locus_tag="BSU01020"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(118618..118620,118759..118761,118765..118776,
118786..118788,118792..118797,118927..118932,
118939..118944)
/gene="rplK"
/locus_tag="BSU01020"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(118666..118668,118678..118680)
/gene="rplK"
/locus_tag="BSU01020"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(118867..118869,118876..118878)
/gene="rplK"
/locus_tag="BSU01020"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 119111..119809
/gene="rplA"
/locus_tag="BSU01030"
/db_xref="GeneID:936843"
CDS 119111..119809
/gene="rplA"
/locus_tag="BSU01030"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="NP_387984.2"
/db_xref="GI:255767020"
/db_xref="GeneID:936843"
/translation="MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEV
AFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYIN
KIQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGK
VEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTM
GPGVKVDSSTFNVK"
misc_feature 119177..119782
/gene="rplA"
/locus_tag="BSU01030"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(119216..119224,119231..119233,119237..119239,
119243..119245,119249..119251,119612..119614,
119618..119620,119624..119626,119762..119767,
119771..119773)
/gene="rplA"
/locus_tag="BSU01030"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 119855..119995
/locus_tag="BSU_misc_RNA_3"
/db_xref="GeneID:8302991"
misc_RNA 119855..119995
/locus_tag="BSU_misc_RNA_3"
/product="L10_leader"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:8302991"
gene 120061..120561
/gene="rplJ"
/locus_tag="BSU01040"
/db_xref="GeneID:936153"
CDS 120061..120561
/gene="rplJ"
/locus_tag="BSU01040"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="NP_387985.2"
/db_xref="GI:255767021"
/db_xref="GeneID:936153"
/translation="MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQ
LREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKN
HEALEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPVRNLALAAKAVAEQ
KEEQGA"
misc_feature 120073..120507
/gene="rplJ"
/locus_tag="BSU01040"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(120082..120087,120094..120096,120226..120237,
120244..120246)
/gene="rplJ"
/locus_tag="BSU01040"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(120328..120330,120397..120399,120406..120408,
120454..120456,120463..120468,120475..120480,
120484..120501,120505..120507)
/gene="rplJ"
/locus_tag="BSU01040"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 120607..120978
/gene="rplL"
/locus_tag="BSU01050"
/db_xref="GeneID:935952"
CDS 120607..120978
/gene="rplL"
/locus_tag="BSU01050"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="NP_387986.1"
/db_xref="GI:16077173"
/db_xref="GeneID:935952"
/translation="MALNIEEIIASVKEATVLELNDLVKAIEEEFGVTAAAPVAVAGG
AAAGGAAEEQSEFDLILAGAGSQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIA
KEEAEELKAKLEEVGASVEVK"
misc_feature 120613..120972
/gene="rplL"
/locus_tag="BSU01050"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(120613..120615,120652..120660,120667..120672,
120679..120681,120688..120690,120733..120735,
120742..120747,120751..120759,120769..120774,
120835..120837,120841..120846,120850..120852,
120856..120861,120901..120906,120910..120912,
120919..120921)
/gene="rplL"
/locus_tag="BSU01050"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(120622..120624,120631..120633,120643..120645,
120682..120684,120697..120699)
/gene="rplL"
/locus_tag="BSU01050"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(120664..120666,120673..120678,120688..120690,
120697..120699)
/gene="rplL"
/locus_tag="BSU01050"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(120808..120813,120820..120825,120832..120834,
120853..120858,120865..120867)
/gene="rplL"
/locus_tag="BSU01050"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(120811..120813,120823..120825,120832..120834,
120853..120858,120865..120867)
/gene="rplL"
/locus_tag="BSU01050"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(120811..120813,120820..120825,120832..120834)
/gene="rplL"
/locus_tag="BSU01050"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 121068..121673
/gene="ybxB"
/locus_tag="BSU01060"
/db_xref="GeneID:938465"
CDS 121068..121673
/gene="ybxB"
/locus_tag="BSU01060"
/EC_number="2.1.1.171"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 17010380; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="ribosomal RNA methyltransferase"
/protein_id="NP_387987.1"
/db_xref="GI:16077174"
/db_xref="GeneID:938465"
/translation="MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDF
GSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENA
EQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGEL
WIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV"
misc_feature <121068..121628
/gene="ybxB"
/locus_tag="BSU01060"
/note="16S RNA G1207 methylase RsmC [Translation,
ribosomal structure and biogenesis]; Region: RsmC;
COG2813"
/db_xref="CDD:225370"
misc_feature 121251..121559
/gene="ybxB"
/locus_tag="BSU01060"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(121260..121280,121332..121337,121410..121418,
121464..121466)
/gene="ybxB"
/locus_tag="BSU01060"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 121919..125500
/gene="rpoB"
/locus_tag="BSU01070"
/db_xref="GeneID:936335"
CDS 121919..125500
/gene="rpoB"
/locus_tag="BSU01070"
/EC_number="2.7.7.6"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="NP_387988.2"
/db_xref="GI:255767022"
/db_xref="GeneID:936335"
/translation="MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEG
LREMFQDISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINKE
TGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTA
TVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR
NTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKIN
KKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYPN
GGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLL
HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN
IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHY
SHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKVTGRIDYLTA
DEEDNYVVAQANARLDDEGAFIDDSIVARFRGENTVVSRNRVDYMDVSPKQVVSAATA
CIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIV
ERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGE
ILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESE
ARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTELTA
EERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIV
QKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVL
ELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRV
SVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
AYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILS
GDEEEIEMRDLEDEEDAKQADGLALSGDEEPEETASADVERDVVTKE"
misc_feature 121925..125359
/gene="rpoB"
/locus_tag="BSU01070"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:234749"
misc_feature 122003..>122485
/gene="rpoB"
/locus_tag="BSU01070"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature 122336..122788
/gene="rpoB"
/locus_tag="BSU01070"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature <123056..125350
/gene="rpoB"
/locus_tag="BSU01070"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(123422..123424,123428..123436,123440..123442,
123449..123451,123464..123466,123752..123754,
123806..123814,123818..123820,124205..124216,
124223..124225,124229..124237,124712..124714,
124718..124720,124724..124726,124790..124792,
124796..124798,124805..124807,124814..124816,
124829..124831,124841..124843,124892..124894,
124973..124975,124997..125005,125009..125011,
125048..125050,125057..125065,125069..125074,
125135..125143,125153..125155,125159..125164,
125168..125170,125174..125191,125195..125212,
125222..125224,125291..125293,125303..125305,
125309..125311,125315..125320,125324..125326,
125330..125341,125345..125347)
/gene="rpoB"
/locus_tag="BSU01070"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(124094..124099,124190..124192,124196..124198,
124259..124261,124268..124270,124739..124741,
124778..124780,124859..124864,124868..124870,
124961..124963,125012..125014)
/gene="rpoB"
/locus_tag="BSU01070"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(124223..124225,124265..124267,124736..124738,
124979..124981)
/gene="rpoB"
/locus_tag="BSU01070"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(124265..124270,124280..124282,124658..124660,
124664..124666,124739..124747,124754..124756,
124760..124765,124976..124999,125003..125005)
/gene="rpoB"
/locus_tag="BSU01070"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(124280..124282,124391..124393,124397..124399,
124409..124417,124421..124423)
/gene="rpoB"
/locus_tag="BSU01070"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene 125562..129161
/gene="rpoC"
/locus_tag="BSU01080"
/db_xref="GeneID:935977"
CDS 125562..129161
/gene="rpoC"
/locus_tag="BSU01080"
/EC_number="2.7.7.6"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="NP_387989.2"
/db_xref="GI:255767023"
/db_xref="GeneID:935977"
/translation="MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKD
GLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVS
HIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLD
KYGNKFQASMGAEAIHKLLQDIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRN
SGNKPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
PSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPHLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIER
VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAG
AVGEGMVFKNTDEALLAYQNGYVHLHTRVAVAANSLKNVTFTEEQRSKLLITTVGKLV
FNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGADVKAVIAQQPINAPFKKGILGKII
AEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQEILEEAQSKVDN
VMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYMMSDSGARGNASN
FTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSG
YLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLEERLIGRFARKQVKHPE
TGEVLVNENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCKRCYGRNLATGSDVE
VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFEARNPKGQATIT
EIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDKITRGQVLTEGSID
PKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV
LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVL
TDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYRKVKPVSNVQPTDDMVPVE"
misc_feature 125568..129143
/gene="rpoC"
/locus_tag="BSU01080"
/note="DNA-directed RNA polymerase subunit beta';
Provisional; Region: PRK00566"
/db_xref="CDD:234794"
misc_feature 125595..126554
/gene="rpoC"
/locus_tag="BSU01080"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature 126231..127061
/gene="rpoC"
/locus_tag="BSU01080"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature 126993..127550
/gene="rpoC"
/locus_tag="BSU01080"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature 127635..127865
/gene="rpoC"
/locus_tag="BSU01080"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature 128298..>128546
/gene="rpoC"
/locus_tag="BSU01080"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(128301..128306,128310..128312)
/gene="rpoC"
/locus_tag="BSU01080"
/note="Rpb1 (beta') - Rpb6 (omega) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
misc_feature 128367..128393
/gene="rpoC"
/locus_tag="BSU01080"
/note="G-loop; other site"
/db_xref="CDD:132721"
misc_feature <128646..129092
/gene="rpoC"
/locus_tag="BSU01080"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(128934..128936,128979..128984)
/gene="rpoC"
/locus_tag="BSU01080"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(129024..129026,129042..129044,129060..129062,
129069..129074,129084..129086)
/gene="rpoC"
/locus_tag="BSU01080"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene 129340..129588
/gene="ybxF"
/locus_tag="BSU01090"
/db_xref="GeneID:936829"
CDS 129340..129588
/gene="ybxF"
/locus_tag="BSU01090"
/function="16.2: Construct biomass (Anabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="in Bacillus subtilis this non-essential protein
associates with the ribosome"
/codon_start=1
/transl_table=11
/product="ribosomal protein L7Ae-like"
/protein_id="NP_387990.1"
/db_xref="GI:16077177"
/db_xref="GeneID:936829"
/translation="MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSS
VVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAIIL"
misc_feature 129340..129540
/gene="ybxF"
/locus_tag="BSU01090"
/note="putative ribosomal protein L7Ae-like; Provisional;
Region: PRK13602"
/db_xref="CDD:184174"
gene 129702..130118
/gene="rpsL"
/locus_tag="BSU01100"
/db_xref="GeneID:936616"
CDS 129702..130118
/gene="rpsL"
/locus_tag="BSU01100"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="NP_387991.2"
/db_xref="GI:255767024"
/db_xref="GeneID:936616"
/translation="MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKR
GVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
LPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK"
misc_feature 129708..130070
/gene="rpsL"
/locus_tag="BSU01100"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(129711..129716,129720..129725,129732..129737)
/gene="rpsL"
/locus_tag="BSU01100"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 129711..129713
/gene="rpsL"
/locus_tag="BSU01100"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(129735..129743,129777..129779,129822..129827,
129831..129833,129876..129881,129885..129893,
129912..129914,129936..129938,129945..129950,
129987..129992,130002..130007,130068..130070)
/gene="rpsL"
/locus_tag="BSU01100"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(129867..129872,130002..130004)
/gene="rpsL"
/locus_tag="BSU01100"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 129870..129875
/gene="rpsL"
/locus_tag="BSU01100"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(129873..129890,129948..129974)
/gene="rpsL"
/locus_tag="BSU01100"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 130160..130630
/gene="rpsG"
/locus_tag="BSU01110"
/db_xref="GeneID:935997"
CDS 130160..130630
/gene="rpsG"
/locus_tag="BSU01110"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="NP_387992.2"
/db_xref="GI:255767025"
/db_xref="GeneID:935997"
/translation="MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILY
KSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLR
WLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW"
misc_feature 130160..130627
/gene="rpsG"
/locus_tag="BSU01110"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 130684..132762
/gene="fusA"
/locus_tag="BSU01120"
/db_xref="GeneID:936826"
CDS 130684..132762
/gene="fusA"
/locus_tag="BSU01120"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="NP_387993.2"
/db_xref="GI:255767026"
/db_xref="GeneID:936826"
/translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
VAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGADFLYSVGTLRDRLQANAH
AIQLPIGAEDNFEGIIDLVENVAYFYEDDLGTRSDAKEIPEEYKEQAEELRNSLIEAV
CELDEELMDKYLEGEEITIDELKAGIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVLD
YLPAPTDVAAIKGTRPDTNEEIERHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTL
DSGSYVKNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTTTGDTLCDEK
DLVILESMEFPEPVIDVAIEPKSKADQDKMGIALAKLAEEDPTFRTQTNPETGQTIIS
GMGELHLDIIVDRMKREFKVEANVGAPQVAYRETFRTGAKVEGKFVRQSGGRGQFGHV
WIEFEPNEEGAGFEFENAIVGGVVPREYIPAVQAGLEDALENGVLAGFPLIDIKAKLF
DGSYHDVDSNEMAFKVAASMALKNAVSKCNPVLLEPIMKVEVVIPEEYMGDIMGDITS
RRGRVEGMEARGNAQVVRAMVPLAEMFGYATALRSNTQGRGTFTMHMDHYEEVPKSVA
EEIIKKNKGE"
misc_feature 130684..132756
/gene="fusA"
/locus_tag="BSU01120"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 130717..131526
/gene="fusA"
/locus_tag="BSU01120"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 130732..130755
/gene="fusA"
/locus_tag="BSU01120"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(130735..130737,130741..130743,130753..130758,
130765..130767,130774..130779,130879..130884,
130936..130941,131008..131013,131119..131121,
131131..131133)
/gene="fusA"
/locus_tag="BSU01120"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(130741..130743,130747..130758,131086..131091,
131095..131097,131461..131469)
/gene="fusA"
/locus_tag="BSU01120"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 130822..130881
/gene="fusA"
/locus_tag="BSU01120"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 130867..130869
/gene="fusA"
/locus_tag="BSU01120"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 130924..130935
/gene="fusA"
/locus_tag="BSU01120"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 130930..130986
/gene="fusA"
/locus_tag="BSU01120"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 131086..131097
/gene="fusA"
/locus_tag="BSU01120"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 131461..131469
/gene="fusA"
/locus_tag="BSU01120"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 131605..131853
/gene="fusA"
/locus_tag="BSU01120"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 132124..132471
/gene="fusA"
/locus_tag="BSU01120"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 132484..132717
/gene="fusA"
/locus_tag="BSU01120"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 132882..134072
/gene="tufA"
/locus_tag="BSU01130"
/db_xref="GeneID:935965"
CDS 132882..134072
/gene="tufA"
/locus_tag="BSU01130"
/EC_number="3.6.5.3"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="NP_387994.1"
/db_xref="GI:16077181"
/db_xref="GeneID:935965"
/translation="MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVLHKKSGKGT
AMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDG
AILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLS
EYDFPGDDVPVVKGSALKALEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVED
VFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDN
IGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFY
FRTTDVTGIIHLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVS
TITE"
misc_feature 132882..134018
/gene="tufA"
/locus_tag="BSU01130"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature 132915..133493
/gene="tufA"
/locus_tag="BSU01130"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 132936..132959
/gene="tufA"
/locus_tag="BSU01130"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(132939..132941,132945..132947,132957..132962,
132969..132971,132978..132983,132993..132995,
133080..133085,133137..133142,133209..133214,
133218..133229,133236..133238,133329..133331,
133341..133343,133419..133424)
/gene="tufA"
/locus_tag="BSU01130"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(132945..132962,133023..133025,133290..133295,
133299..133301,133404..133412)
/gene="tufA"
/locus_tag="BSU01130"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 133050..133082
/gene="tufA"
/locus_tag="BSU01130"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 133068..133070
/gene="tufA"
/locus_tag="BSU01130"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 133125..133136
/gene="tufA"
/locus_tag="BSU01130"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 133131..133187
/gene="tufA"
/locus_tag="BSU01130"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 133290..133301
/gene="tufA"
/locus_tag="BSU01130"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 133404..133412
/gene="tufA"
/locus_tag="BSU01130"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 133515..133778
/gene="tufA"
/locus_tag="BSU01130"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature 133785..134018
/gene="tufA"
/locus_tag="BSU01130"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature order(133821..133823,133827..133835,133887..133889,
134007..134015)
/gene="tufA"
/locus_tag="BSU01130"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene 134171..135127
/gene="ybaC"
/locus_tag="BSU01140"
/db_xref="GeneID:936866"
CDS 134171..135127
/gene="ybaC"
/locus_tag="BSU01140"
/EC_number="3.4.11.5"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="proline iminopeptidase"
/protein_id="NP_387995.2"
/db_xref="GI:255767027"
/db_xref="GeneID:936866"
/translation="MIPEKKSIAIMKELSIGNTKQMLMINGVDVKNPLLLFLHGGPGT
PQIGYVRHYQKELEQYFTVVHWDQRGSGLSYSKRISHHSMTINHFIKDTIQVTQWLLA
HFSKSKLYLAGHSWGSILALHVLQQRPDLFYTYYGISQVVNPQDEESTAYQHIREISE
SKKASILSFLTRFIGAPPWKQDIQHLIYRFCVELTRGGFTHRHRQSLAVLFQMLTGNE
YGVRNMHSFLNGLRFSKKHLTDELYRFNAFTSVPSIKVPCVFISGKHDLIVPAEISKQ
YYQELEAPEKRWFQFENSAHTPHIEEPSLFANTLSRHARHHL"
misc_feature 134264..135121
/gene="ybaC"
/locus_tag="BSU01140"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
misc_feature <134438..>134593
/gene="ybaC"
/locus_tag="BSU01140"
/note="Prolyl oligopeptidase family; Region: Peptidase_S9;
pfam00326"
/db_xref="CDD:215859"
gene 135364..135672
/gene="rpsJ"
/locus_tag="BSU01150"
/db_xref="GeneID:936825"
CDS 135364..135672
/gene="rpsJ"
/locus_tag="BSU01150"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="NusE; involved in assembly of the 30S subunit; in
the ribosome, this protein is involved in the binding of
tRNA; in Escherichia coli this protein was also found to
be involved in transcription antitermination; NusB/S10
heterodimers bind boxA sequences in the leader RNA of rrn
operons which is required for antitermination; binding of
NusB/S10 to boxA nucleates assembly of the antitermination
complex"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="NP_387996.1"
/db_xref="GI:16077183"
/db_xref="GeneID:936825"
/translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
EKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
"
misc_feature 135364..135669
/gene="rpsJ"
/locus_tag="BSU01150"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 135712..136341
/gene="rplC"
/locus_tag="BSU01160"
/db_xref="GeneID:936239"
CDS 135712..136341
/gene="rplC"
/locus_tag="BSU01160"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds directly near the 3' end of the 23S rRNA,
where it nucleates assembly of the 50S subunit; essential
for peptidyltransferase activity; mutations in this gene
confer resistance to tiamulin"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="NP_387997.1"
/db_xref="GI:16077184"
/db_xref="GeneID:936239"
/translation="MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAEND
GYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIF
SAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLL
PGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK"
misc_feature 135712..136338
/gene="rplC"
/locus_tag="BSU01160"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:234564"
gene 136369..136992
/gene="rplD"
/locus_tag="BSU01170"
/db_xref="GeneID:936690"
CDS 136369..136992
/gene="rplD"
/locus_tag="BSU01170"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="L4 is important during the early stages of 50S
assembly; it initially binds near the 5' end of the 23S
rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="NP_387998.1"
/db_xref="GI:16077185"
/db_xref="GeneID:936690"
/translation="MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASL
RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLP
KKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADAN
EAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA"
misc_feature 136372..136989
/gene="rplD"
/locus_tag="BSU01170"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:235404"
gene 136992..137279
/gene="rplW"
/locus_tag="BSU01180"
/db_xref="GeneID:936820"
CDS 136992..137279
/gene="rplW"
/locus_tag="BSU01180"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds third domain of 23S rRNA and protein L29;
part of exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L23"
/protein_id="NP_387999.2"
/db_xref="GI:255767028"
/db_xref="GeneID:936820"
/translation="MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVE
SIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA"
misc_feature 137004..137276
/gene="rplW"
/locus_tag="BSU01180"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:235586"
gene 137311..138144
/gene="rplB"
/locus_tag="BSU01190"
/db_xref="GeneID:936817"
CDS 137311..138144
/gene="rplB"
/locus_tag="BSU01190"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="one of the primary rRNA-binding proteins; required
for association of the 30S and 50S subunits to form the
70S ribosome, for tRNA binding and peptide bond formation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="NP_388000.2"
/db_xref="GI:255767029"
/db_xref="GeneID:936817"
/translation="MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRN
NQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEKR
YILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT
SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRP
TVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKN
K"
misc_feature 137311..138141
/gene="rplB"
/locus_tag="BSU01190"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:236488"
misc_feature 137434..137664
/gene="rplB"
/locus_tag="BSU01190"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 137680..138069
/gene="rplB"
/locus_tag="BSU01190"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 138202..138480
/gene="rpsS"
/locus_tag="BSU01200"
/db_xref="GeneID:936818"
CDS 138202..138480
/gene="rpsS"
/locus_tag="BSU01200"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="protein S19 forms a complex with S13 that binds
strongly to the 16S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="NP_388001.1"
/db_xref="GI:16077188"
/db_xref="GeneID:936818"
/translation="MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQF
IGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR"
misc_feature 138202..138477
/gene="rpsS"
/locus_tag="BSU01200"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 138497..138838
/gene="rplV"
/locus_tag="BSU01210"
/db_xref="GeneID:938123"
CDS 138497..138838
/gene="rplV"
/locus_tag="BSU01210"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds specifically to 23S rRNA during the early
stages of 50S assembly; makes contact with all 6 domains
of the 23S rRNA in the assembled 50S subunit and ribosome;
mutations in this gene result in erythromycin resistance;
located near peptidyl-transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="NP_388002.1"
/db_xref="GI:16077189"
/db_xref="GeneID:938123"
/translation="MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAAS
PIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSH
ITIVVSEKKEG"
misc_feature 138503..138817
/gene="rplV"
/locus_tag="BSU01210"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:238205"
misc_feature order(138503..138508,138572..138580,138584..138589,
138593..138598,138659..138676,138701..138718,
138812..138817)
/gene="rplV"
/locus_tag="BSU01210"
/note="putative translocon binding site; other site"
/db_xref="CDD:238205"
misc_feature order(138512..138514,138518..138520,138527..138529,
138533..138541,138548..138550,138560..138562,
138569..138571,138653..138655,138665..138667,
138674..138676,138713..138715,138719..138727,
138731..138733,138740..138742,138776..138793)
/gene="rplV"
/locus_tag="BSU01210"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238205"
gene 138842..139498
/gene="rpsC"
/locus_tag="BSU01220"
/db_xref="GeneID:936808"
CDS 138842..139498
/gene="rpsC"
/locus_tag="BSU01220"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="forms a complex with S10 and S14; binds the lower
part of the 30S subunit head and the mRNA in the complete
ribosome to position it for translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="NP_388003.2"
/db_xref="GI:255767030"
/db_xref="GeneID:936808"
/translation="MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISK
RLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINI
LEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGAD
IARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK
"
misc_feature 138842..139495
/gene="rpsC"
/locus_tag="BSU01220"
/note="30S ribosomal protein S3; Reviewed; Region: rpsC;
PRK00310"
/db_xref="CDD:234722"
misc_feature 138845..139162
/gene="rpsC"
/locus_tag="BSU01220"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:239095"
misc_feature 139070..139081
/gene="rpsC"
/locus_tag="BSU01220"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239095"
misc_feature 139193..139444
/gene="rpsC"
/locus_tag="BSU01220"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:215779"
gene 139500..139934
/gene="rplP"
/locus_tag="BSU01230"
/db_xref="GeneID:936807"
CDS 139500..139934
/gene="rplP"
/locus_tag="BSU01230"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="located in the peptidyl transferase center and may
be involved in peptidyl transferase activity; similar to
archaeal L10e"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="NP_388004.1"
/db_xref="GI:16077191"
/db_xref="GeneID:936807"
/translation="MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITN
RQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKV
LFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES"
misc_feature 139569..139895
/gene="rplP"
/locus_tag="BSU01230"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:238714"
misc_feature order(139572..139577,139584..139586,139632..139637,
139644..139646,139653..139655,139665..139667,
139674..139676,139692..139700,139704..139706,
139710..139712,139722..139727,139746..139760,
139800..139802,139854..139859,139866..139871)
/gene="rplP"
/locus_tag="BSU01230"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238714"
misc_feature 139611..139616
/gene="rplP"
/locus_tag="BSU01230"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(139647..139655,139662..139667)
/gene="rplP"
/locus_tag="BSU01230"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:238714"
misc_feature order(139674..139676,139683..139688,139692..139694,
139818..139820)
/gene="rplP"
/locus_tag="BSU01230"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(139740..139745,139752..139757)
/gene="rplP"
/locus_tag="BSU01230"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
gene 139924..140124
/gene="rpmC"
/locus_tag="BSU01240"
/db_xref="GeneID:936801"
CDS 139924..140124
/gene="rpmC"
/locus_tag="BSU01240"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="one of the stabilizing components for the large
ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="NP_388005.1"
/db_xref="GI:16077192"
/db_xref="GeneID:936801"
/translation="MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIR
EVRKAIARMKTVIREREIAANK"
misc_feature 139933..140103
/gene="rpmC"
/locus_tag="BSU01240"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:238243"
misc_feature order(139933..139935,139942..139944,140044..140046,
140074..140079,140083..140088,140098..140100)
/gene="rpmC"
/locus_tag="BSU01240"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238243"
misc_feature order(139933..139941,139945..139947,139957..139962,
139966..139971,139978..139983,139990..139995,
140002..140004,140011..140016,140038..140040,
140047..140049,140059..140061,140068..140073,
140080..140085,140092..140094)
/gene="rpmC"
/locus_tag="BSU01240"
/note="putative translocon interaction site; other site"
/db_xref="CDD:238243"
misc_feature order(139981..139983,139993..139995,140002..140004,
140014..140016,140059..140061)
/gene="rpmC"
/locus_tag="BSU01240"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:238243"
misc_feature order(139999..140001,140008..140013)
/gene="rpmC"
/locus_tag="BSU01240"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:238243"
misc_feature 140020..140025
/gene="rpmC"
/locus_tag="BSU01240"
/note="trigger factor interaction site; other site"
/db_xref="CDD:238243"
gene 140147..140410
/gene="rpsQ"
/locus_tag="BSU01250"
/db_xref="GeneID:936805"
CDS 140147..140410
/gene="rpsQ"
/locus_tag="BSU01250"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="primary binding protein; helps mediate assembly;
involved in translation fidelity"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="NP_388006.1"
/db_xref="GI:16077193"
/db_xref="GeneID:936805"
/translation="MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSK
KFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVII"
misc_feature 140153..140401
/gene="rpsQ"
/locus_tag="BSU01250"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:235532"
gene 140451..140819
/gene="rplN"
/locus_tag="BSU01260"
/db_xref="GeneID:935939"
CDS 140451..140819
/gene="rplN"
/locus_tag="BSU01260"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds to the 23S rRNA between the centers for
peptidyl transferase and GTPase"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="NP_388007.1"
/db_xref="GI:16077194"
/db_xref="GeneID:935939"
/translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVK
QATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPV
ARELRENNFMKIVSLAPEVI"
misc_feature 140451..140816
/gene="rplN"
/locus_tag="BSU01260"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 140857..141168
/gene="rplX"
/locus_tag="BSU01270"
/db_xref="GeneID:936799"
CDS 140857..141168
/gene="rplX"
/locus_tag="BSU01270"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="assembly initiator protein; binds to 5' end of 23S
rRNA and nucleates assembly of the 50S; surrounds
polypeptide exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="NP_388008.1"
/db_xref="GI:16077195"
/db_xref="GeneID:936799"
/translation="MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKH
SKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLD
K"
misc_feature 140857..141162
/gene="rplX"
/locus_tag="BSU01270"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:234566"
misc_feature 140872..141063
/gene="rplX"
/locus_tag="BSU01270"
/note="KOW motif of Ribosomal Protein L26; Region:
KOW_RPL26; cd06089"
/db_xref="CDD:240513"
misc_feature order(140893..140901,140935..140937,140980..140985,
141049..141054)
/gene="rplX"
/locus_tag="BSU01270"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240513"
gene 141195..141734
/gene="rplE"
/locus_tag="BSU01280"
/db_xref="GeneID:936981"
CDS 141195..141734
/gene="rplE"
/locus_tag="BSU01280"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts
5S rRNA and P site tRNA; forms a bridge to the 30S subunit
in the ribosome by binding to S13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="NP_388009.1"
/db_xref="GI:16077196"
/db_xref="GeneID:936981"
/translation="MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAV
QNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDK
LISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTA
NTDEEARELLTQVGMPFQK"
misc_feature 141195..141731
/gene="rplE"
/locus_tag="BSU01280"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 141264..141434
/gene="rplE"
/locus_tag="BSU01280"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 141444..141725
/gene="rplE"
/locus_tag="BSU01280"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 141757..141942
/gene="rpsN"
/locus_tag="BSU01290"
/db_xref="GeneID:935946"
CDS 141757..141942
/gene="rpsN"
/locus_tag="BSU01290"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="located in the peptidyl transferase center and
involved in assembly of 30S ribosome subunit; similar to
what is observed with proteins L31 and L33, some proteins
in this family contain CXXC motifs that are involved in
zinc binding; if two copies are present in a genome, then
the duplicated copy appears to have lost the zinc-binding
motif and is instead regulated by zinc; the proteins in
this group appear to contain the zinc-binding motif"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="NP_388010.1"
/db_xref="GI:16077197"
/db_xref="GeneID:935946"
/translation="MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICF
RELAYKGQIPGVKKASW"
misc_feature 141757..141939
/gene="rpsN"
/locus_tag="BSU01290"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08061"
/db_xref="CDD:181216"
gene 141974..142372
/gene="rpsH"
/locus_tag="BSU01300"
/db_xref="GeneID:936328"
CDS 141974..142372
/gene="rpsH"
/locus_tag="BSU01300"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds directly to 16S rRNA central domain where it
helps coordinate assembly of the platform of the 30S
subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="NP_388011.2"
/db_xref="GI:255767031"
/db_xref="GeneID:936328"
/translation="MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREG
FIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLG
IAIISTSQGVLTDKEARAKQAGGEVLAYVW"
misc_feature 141977..142369
/gene="rpsH"
/locus_tag="BSU01300"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:234658"
gene 142402..142941
/gene="rplF"
/locus_tag="BSU01310"
/db_xref="GeneID:938229"
CDS 142402..142941
/gene="rplF"
/locus_tag="BSU01310"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="ribosomal protein L6 appears to have arisen as a
result of an ancient gene duplication as based on
structural comparison of the Bacillus stearothermophilus
protein; RNA-binding appears to be in the C-terminal
domain; mutations in the L6 gene confer resistance to
aminoglycoside antibiotics such as gentamicin and these
occur in truncations of the C-terminal domain; it has been
localized to a region between the base of the L7/L12 stalk
and the central protuberance"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="NP_388012.1"
/db_xref="GI:16077199"
/db_xref="GeneID:938229"
/translation="MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEI
KVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGN
KLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG
KGIRYEGEVVRRKEGKSAK"
misc_feature 142402..142938
/gene="rplF"
/locus_tag="BSU01310"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:235495"
misc_feature 142432..142650
/gene="rplF"
/locus_tag="BSU01310"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
misc_feature 142672..142896
/gene="rplF"
/locus_tag="BSU01310"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
gene 142974..143336
/gene="rplR"
/locus_tag="BSU01320"
/db_xref="GeneID:936785"
CDS 142974..143336
/gene="rplR"
/locus_tag="BSU01320"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="binds 5S rRNA along with protein L5 and L25"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="NP_388013.2"
/db_xref="GI:255767032"
/db_xref="GeneID:936785"
/translation="MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQI
IDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLY
HGRVKALADAAREAGLKF"
misc_feature 143028..143327
/gene="rplR"
/locus_tag="BSU01320"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:238246"
misc_feature order(143031..143033,143037..143042,143046..143048,
143061..143063,143073..143090,143094..143096,
143100..143102,143121..143129,143136..143138,
143253..143255,143286..143288)
/gene="rplR"
/locus_tag="BSU01320"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238246"
misc_feature order(143031..143033,143040..143045)
/gene="rplR"
/locus_tag="BSU01320"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:238246"
misc_feature order(143034..143039,143256..143258,143265..143267,
143313..143315)
/gene="rplR"
/locus_tag="BSU01320"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238246"
misc_feature 143271..143273
/gene="rplR"
/locus_tag="BSU01320"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:238246"
gene 143361..143861
/gene="rpsE"
/locus_tag="BSU01330"
/db_xref="GeneID:938012"
CDS 143361..143861
/gene="rpsE"
/locus_tag="BSU01330"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="located at the back of the 30S subunit body where
it stabilizes the conformation of the head with respect to
the body; contacts S4 and S8; with S4 and S12 plays a role
in translational accuracy; mutations in this gene result
in spectinomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="NP_388014.1"
/db_xref="GI:16077201"
/db_xref="GeneID:938012"
/translation="MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNG
HVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEG
TGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKS
VEELLG"
misc_feature 143361..143858
/gene="rpsE"
/locus_tag="BSU01330"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:234790"
misc_feature 143388..143585
/gene="rpsE"
/locus_tag="BSU01330"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 143613..143834
/gene="rpsE"
/locus_tag="BSU01330"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 143875..144054
/gene="rpmD"
/locus_tag="BSU01340"
/db_xref="GeneID:936920"
CDS 143875..144054
/gene="rpmD"
/locus_tag="BSU01340"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="L30 binds domain II of the 23S rRNA and the 5S
rRNA; similar to eukaryotic protein L7"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="NP_388015.1"
/db_xref="GI:16077202"
/db_xref="GeneID:936920"
/translation="MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIR
GMINKVSHLVSVKEQ"
misc_feature 143884..144042
/gene="rpmD"
/locus_tag="BSU01340"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(143902..143907,143911..143916,143920..143928,
143935..143940,143947..143955,143959..143961,
143968..143970,143983..143988,143995..144003,
144007..144012)
/gene="rpmD"
/locus_tag="BSU01340"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 144085..144525
/gene="rplO"
/locus_tag="BSU01350"
/db_xref="GeneID:935940"
CDS 144085..144525
/gene="rplO"
/locus_tag="BSU01350"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="late assembly protein"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="NP_388016.1"
/db_xref="GI:16077203"
/db_xref="GeneID:935940"
/translation="MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGG
GVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLDKLNGFAEGTEVTPELLLETGVI
SKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI"
misc_feature 144085..144477
/gene="rplO"
/locus_tag="BSU01350"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:235523"
gene 144527..145822
/gene="secY"
/locus_tag="BSU01360"
/db_xref="GeneID:936779"
CDS 144527..145822
/gene="secY"
/locus_tag="BSU01360"
/function="16.1: Circulate"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="forms heterotrimeric complex in the membrane; in
bacteria the complex consists of SecY which forms the
channel pore and SecE and SecG; the SecG subunit is not
essential; in bacteria translocation is driven via the
SecA ATPase"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecY"
/protein_id="NP_388017.1"
/db_xref="GI:16077204"
/db_xref="GeneID:936779"
/translation="MFKTISNFMRVSDIRNKIIFTLLMLIVFRIGAFIPVPYVNAEAL
QAQSQMGVFDLLNTFGGGALYQFSIFAMGITPYITASIIIQLLQMDVVPKFTEWSKQG
EVGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLANGMLIEKSGVSTYLIIALVLTGGT
AFLMWLGEQITSHGVGNGISIIIFAGIVSSIPKTIGQIYETQFVGSNDQLFIHIVKVA
LLVIAILAVIVGVIFIQQAVRKIAIQYAKGTGRSPAGGGQSTHLPLKVNPAGVIPVIF
AVAFLITPRTIASFFGTNDVTKWIQNNFDNTHPVGMAIYVALIIAFTYFYAFVQVNPE
QMADNLKKQGGYIPGVRPGKMTQDRITSILYRLTFVGSIFLAVISILPIFFIQFAGLP
QSAQIGGTSLLIVVGVALETMKQLESQLVKRNYRGFMKN"
misc_feature 144527..145813
/gene="secY"
/locus_tag="BSU01360"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:236412"
misc_feature 144728..145768
/gene="secY"
/locus_tag="BSU01360"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:215869"
gene 145877..146530
/gene="adk"
/locus_tag="BSU01370"
/db_xref="GeneID:938508"
CDS 145877..146530
/gene="adk"
/locus_tag="BSU01370"
/EC_number="2.7.4.3"
/function="16.7: Manage energy"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="essential enzyme that recycles AMP in active cells;
converts ATP and AMP to two molecules of ADP"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="NP_388018.1"
/db_xref="GI:16077205"
/db_xref="GeneID:938508"
/translation="MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETP
LGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE
YGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR
ADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGLKK"
misc_feature 145877..146521
/gene="adk"
/locus_tag="BSU01370"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:234711"
misc_feature 145880..146488
/gene="adk"
/locus_tag="BSU01370"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:238713"
misc_feature order(145967..145969,145982..145984,146051..146053,
146126..146131,146135..146140,146150..146152)
/gene="adk"
/locus_tag="BSU01370"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:238713"
misc_feature order(145982..145984,146126..146128,146138..146140,
146255..146257,146387..146389,146399..146401)
/gene="adk"
/locus_tag="BSU01370"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:238713"
gene 146527..147273
/gene="mapA"
/locus_tag="BSU01380"
/db_xref="GeneID:938929"
CDS 146527..147273
/gene="mapA"
/locus_tag="BSU01380"
/EC_number="3.4.11.18"
/function="16.2: Construct biomass (Anabolism)"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the removal of N-terminal amino acids
from peptides and arylamides; generally Co(II) however
activity has been shown for some methionine
aminopeptidases with Zn, Fe, or Mn"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase"
/protein_id="NP_388019.1"
/db_xref="GI:16077206"
/db_xref="GeneID:938929"
/translation="MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIA
ERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGY
HGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFS
VVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNW
TVVTVDGKKCAHFEHTIAITETGFDILTRV"
misc_feature 146560..147267
/gene="mapA"
/locus_tag="BSU01380"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:238519"
misc_feature order(146755..146757,146806..146808,146839..146841,
147028..147030,147127..147129,147220..147222)
/gene="mapA"
/locus_tag="BSU01380"
/note="active site"
/db_xref="CDD:238519"
gene 147312..147536
/gene="ybzG"
/locus_tag="BSU01389"
/db_xref="GeneID:8303095"
CDS 147312..147536
/gene="ybzG"
/locus_tag="BSU01389"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 17157877; Product type pf : factor"
/codon_start=1
/transl_table=11
/product="ribosomal protein"
/protein_id="YP_003097669.1"
/db_xref="GI:255767033"
/db_xref="GeneID:8303095"
/translation="MIGQKAWVNIGKTEFILLLVVGILTIINVLTADGEKRTFHSPKK
KNINHLTLYDCVSPEVQNSINETGRVTNFF"
misc_feature <147405..147527
/gene="ybzG"
/locus_tag="BSU01389"
/note="KOW motif of Ribosomal Protein L14; Region:
KOW_RPL14; cd06088"
/db_xref="CDD:240512"
misc_feature order(147447..147449,147453..147458,147462..147464,
147492..147494,147501..147503,147507..147512)
/gene="ybzG"
/locus_tag="BSU01389"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240512"
gene 147585..147803
/gene="infA"
/locus_tag="BSU01390"
/db_xref="GeneID:938924"
CDS 147585..147803
/gene="infA"
/locus_tag="BSU01390"
/function="16.2: Construct biomass (Anabolism)"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="stimulates the activities of the other two
initiation factors, IF-2 and IF-3"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-1"
/protein_id="NP_388020.1"
/db_xref="GI:16077207"
/db_xref="GeneID:938924"
/translation="MAKDDVIEVEGTIVETLPNAMFKVELENGHTVLAHVSGKIRMHF
IRILPGDKVTVELSPYDLTRGRITYRYK"
misc_feature 147603..147794
/gene="infA"
/locus_tag="BSU01390"
/note="S1_IF1: Translation Initiation Factor IF1, S1-like
RNA-binding domain. IF1 contains an S1-like RNA-binding
domain, which is found in a wide variety of RNA-associated
proteins. Translation initiation includes a number of
interrelated steps preceding the...; Region: S1_IF1;
cd04451"
/db_xref="CDD:239898"
misc_feature order(147627..147635,147651..147653,147687..147689,
147696..147701,147714..147725,147774..147776,
147780..147782)
/gene="infA"
/locus_tag="BSU01390"
/note="rRNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239898"
misc_feature order(147687..147689,147699..147701,147792..147794)
/gene="infA"
/locus_tag="BSU01390"
/note="predicted 30S ribosome binding site; other site"
/db_xref="CDD:239898"
gene 147837..147950
/gene="rpmJ"
/locus_tag="BSU01400"
/db_xref="GeneID:938927"
CDS 147837..147950
/gene="rpmJ"
/locus_tag="BSU01400"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="smallest protein in the large subunit; similar to
what is found with protein L31 and L33 several bacterial
genomes contain paralogs which may be regulated by zinc;
the protein from Thermus thermophilus has a zinc-binding
motif and contains a bound zinc ion; the proteins in this
group have the motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="NP_388021.1"
/db_xref="GI:16077208"
/db_xref="GeneID:938927"
/translation="MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG"
misc_feature 147837..147947
/gene="rpmJ"
/locus_tag="BSU01400"
/note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
PRK00465"
/db_xref="CDD:179039"
gene 147973..148338
/gene="rpsM"
/locus_tag="BSU01410"
/db_xref="GeneID:938928"
CDS 147973..148338
/gene="rpsM"
/locus_tag="BSU01410"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="located at the top of the head of the 30S subunit,
it contacts several helices of the 16S rRNA; makes contact
with the large subunit via RNA-protein interactions and
via protein-protein interactions with L5; contacts P-site
tRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="NP_388022.2"
/db_xref="GI:255767034"
/db_xref="GeneID:938928"
/translation="MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTR
VRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNS
KNNARTRKGPRRTVANKKK"
misc_feature 147973..148335
/gene="rpsM"
/locus_tag="BSU01410"
/note="30S ribosomal protein S13; Validated; Region: rpsM;
PRK05179"
/db_xref="CDD:235358"
misc_feature 147979..148314
/gene="rpsM"
/locus_tag="BSU01410"
/note="30S ribosomal protein S13; Region: bact_S13;
TIGR03631"
/db_xref="CDD:213840"
gene 148359..148754
/gene="rpsK"
/locus_tag="BSU01420"
/db_xref="GeneID:938926"
CDS 148359..148754
/gene="rpsK"
/locus_tag="BSU01420"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="located on the platform of the 30S subunit, it
bridges several disparate RNA helices of the 16S rRNA;
forms part of the Shine-Dalgarno cleft in the 70S
ribosome; interacts with S7 and S18 and IF-3"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="NP_388023.1"
/db_xref="GI:16077210"
/db_xref="GeneID:938926"
/translation="MAAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAI
SWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGPGSGREAAIRAL
QAAGLEVTAIRDVTPVPHNGCRPPKRRRV"
misc_feature 148368..148751
/gene="rpsK"
/locus_tag="BSU01420"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 148931..149875
/gene="rpoA"
/locus_tag="BSU01430"
/db_xref="GeneID:938921"
CDS 148931..149875
/gene="rpoA"
/locus_tag="BSU01430"
/EC_number="2.7.7.6"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the transcription of DNA into RNA using
the four ribonucleoside triphosphates as substrates.
Dimerization of the alpha subunit is the first step in the
sequential assembly of subunits to form the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="NP_388024.1"
/db_xref="GI:16077211"
/db_xref="GeneID:938921"
/translation="MIEIEKPKIETVEISDDAKFGKFVVEPLERGYGTTLGNSLRRIL
LSSLPGAAVTSIQIDGVLHEFSTIEGVVEDVTTIILHIKKLALKIYSDEEKTLEIDVQ
GEGTVTAADITHDSDVEILNPDLHIATLGENASFRVRLTAQRGRGYTPADANKRDDQP
IGVIPIDSIYTPVSRVSYQVENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILT
EHLNIFVGLTDEAQHAEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
LANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD"
misc_feature 148934..149866
/gene="rpoA"
/locus_tag="BSU01430"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:235359"
misc_feature 148967..149602
/gene="rpoA"
/locus_tag="BSU01430"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(148967..148969,149003..149005,149012..149014,
149018..149026,149033..149035,149045..149047,
149054..149059,149069..149071,149570..149572,
149579..149584,149588..149593,149597..149602)
/gene="rpoA"
/locus_tag="BSU01430"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(148994..148996,149030..149032,149042..149044,
149051..149056,149117..149119,149123..149125,
149129..149131,149135..149146,149159..149161,
149177..149179,149321..149323,149372..149374,
149429..149431,149435..149437,149453..149461,
149465..149476,149504..149506,149513..149515,
149519..149521)
/gene="rpoA"
/locus_tag="BSU01430"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(149123..149125,149159..149161,149168..149170,
149177..149182,149369..149374,149378..149380,
149435..149437,149450..149455,149480..149482)
/gene="rpoA"
/locus_tag="BSU01430"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 149645..149845
/gene="rpoA"
/locus_tag="BSU01430"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 149953..150315
/gene="rplQ"
/locus_tag="BSU01440"
/db_xref="GeneID:938918"
CDS 149953..150315
/gene="rplQ"
/locus_tag="BSU01440"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="is a component of the macrolide binding site in the
peptidyl transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="NP_388025.1"
/db_xref="GI:16077212"
/db_xref="GeneID:938918"
/translation="MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVV
EKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIM
KLGPRRGDGAPMAIIELV"
misc_feature 149953..150312
/gene="rplQ"
/locus_tag="BSU01440"
/note="50S ribosomal protein L17; Validated; Region: rplQ;
PRK05591"
/db_xref="CDD:235522"
gene 150443..151288
/gene="cbiO"
/locus_tag="BSU01450"
/db_xref="GeneID:938925"
CDS 150443..151288
/gene="cbiO"
/locus_tag="BSU01450"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="with CbiNQ forms the ABC transporter for cobalt
import; Bacillus spp. have two adjacent copies of this
gene"
/codon_start=1
/transl_table=11
/product="cobalt transporter ATP-binding subunit"
/protein_id="NP_388026.2"
/db_xref="GI:255767035"
/db_xref="GeneID:938925"
/translation="MNQNQLISVEDIVFRYRKDAERRALDGVSLQVYEGEWLAIVGHN
GSGKSTLARALNGLILPESGDIEVAGIQLTEESVWEVRKKIGMVFQNPDNQFVGTTVR
DDVAFGLENNGVPREEMIERVDWAVKQVNMQDFLDQEPHHLSGGQKQRVAIAGVIAAR
PDIIILDEATSMLDPIGREEVLETVRHLKEQGMATVISITHDLNEAAKADRIIVMNGG
KKYAEGPPEEIFKLNKELVRIGLDLPFSFQLSQLLRENGLALEENHLTQEGLVKELWT
LQSKM"
misc_feature 150446..151285
/gene="cbiO"
/locus_tag="BSU01450"
/note="cobalt transporter ATP-binding subunit;
Provisional; Region: cbiO; PRK13635"
/db_xref="CDD:184195"
misc_feature 150464..151099
/gene="cbiO"
/locus_tag="BSU01450"
/note="First domain of the ATP-binding cassette component
of cobalt transport system; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:213192"
misc_feature 150566..150589
/gene="cbiO"
/locus_tag="BSU01450"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213192"
misc_feature order(150575..150580,150584..150592,150710..150712,
150941..150946,151043..151045)
/gene="cbiO"
/locus_tag="BSU01450"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213192"
misc_feature 150701..150712
/gene="cbiO"
/locus_tag="BSU01450"
/note="Q-loop/lid; other site"
/db_xref="CDD:213192"
misc_feature 150869..150898
/gene="cbiO"
/locus_tag="BSU01450"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213192"
misc_feature 150929..150946
/gene="cbiO"
/locus_tag="BSU01450"
/note="Walker B; other site"
/db_xref="CDD:213192"
misc_feature 150953..150964
/gene="cbiO"
/locus_tag="BSU01450"
/note="D-loop; other site"
/db_xref="CDD:213192"
misc_feature 151031..151051
/gene="cbiO"
/locus_tag="BSU01450"
/note="H-loop/switch region; other site"
/db_xref="CDD:213192"
gene 151303..152133
/gene="cbiO"
/locus_tag="BSU01460"
/db_xref="GeneID:938922"
CDS 151303..152133
/gene="cbiO"
/locus_tag="BSU01460"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="with CbiNQ forms the ABC transporter for cobalt
import; Bacillus spp. have two adjacent copies of this
gene"
/codon_start=1
/transl_table=11
/product="cobalt transporter ATP-binding subunit"
/protein_id="NP_388027.1"
/db_xref="GI:16077214"
/db_xref="GeneID:938922"
/translation="MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLL
KPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQFPEHQLFEETVLKDISFGPMNFG
VKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPT
AGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPR
DLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL
"
misc_feature 151303..152130
/gene="cbiO"
/locus_tag="BSU01460"
/note="cobalt transporter ATP-binding subunit;
Provisional; Region: cbiO; PRK13634"
/db_xref="CDD:237454"
misc_feature 151318..151932
/gene="cbiO"
/locus_tag="BSU01460"
/note="First domain of the ATP-binding cassette component
of cobalt transport system; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:213192"
misc_feature 151381..151404
/gene="cbiO"
/locus_tag="BSU01460"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213192"
misc_feature order(151390..151395,151399..151407,151537..151539,
151771..151776,151873..151875)
/gene="cbiO"
/locus_tag="BSU01460"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213192"
misc_feature 151528..151539
/gene="cbiO"
/locus_tag="BSU01460"
/note="Q-loop/lid; other site"
/db_xref="CDD:213192"
misc_feature 151699..151728
/gene="cbiO"
/locus_tag="BSU01460"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213192"
misc_feature 151759..151776
/gene="cbiO"
/locus_tag="BSU01460"
/note="Walker B; other site"
/db_xref="CDD:213192"
misc_feature 151783..151794
/gene="cbiO"
/locus_tag="BSU01460"
/note="D-loop; other site"
/db_xref="CDD:213192"
misc_feature 151861..151881
/gene="cbiO"
/locus_tag="BSU01460"
/note="H-loop/switch region; other site"
/db_xref="CDD:213192"
gene 152130..152927
/gene="ybaF"
/locus_tag="BSU01470"
/db_xref="GeneID:938923"
CDS 152130..152927
/gene="ybaF"
/locus_tag="BSU01470"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="NP_388028.2"
/db_xref="GI:255767036"
/db_xref="GeneID:938923"
/translation="MMDSMIIGKYVPGTSLVHRLDPRTKLITIFLFVCIVFLANNVQT
YALLGLFTIGVVSLTRVPFSFLMKGLKPIIWIVLFTFLLHILMTHEGPIIFQIGFFKV
YEGGLVQGIFISLRFVYLILITTLLTLTTTPIEITDGMEQLLNPLKKLKLPVHELALM
MSISLRFIPTLMEETDKIMKAQMARGVDFTSGPVKERVKAIVPLLVPLFVSAFKRAEE
LAVAMEARGYQGGEGRTKYRKLVWTGKDTSVIVSLIVLAALLFFLRA"
misc_feature 152142..152870
/gene="ybaF"
/locus_tag="BSU01470"
/note="ABC-type cobalt transport system, permease
component CbiQ and related transporters [Inorganic ion
transport and metabolism]; Region: CbiQ; COG0619"
/db_xref="CDD:223692"
gene 152937..153680
/gene="truA"
/locus_tag="BSU01480"
/db_xref="GeneID:938920"
CDS 152937..153680
/gene="truA"
/locus_tag="BSU01480"
/EC_number="5.4.99.12"
/function="16.6: Maintain"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="mediates pseudouridylation (positions 38, 39, 40)
at the tRNA anticodon region which contributes to the
structural stability"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="NP_388029.2"
/db_xref="GI:255767037"
/db_xref="GeneID:938920"
/translation="MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRI
PVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHA
RFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAA
KTEVQDKVRTIYELDWTETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVK
SMLEAKDREAAGRTAPGHGLYLWNVYYDN"
misc_feature 152937..153671
/gene="truA"
/locus_tag="BSU01480"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:234577"
misc_feature 152949..153671
/gene="truA"
/locus_tag="BSU01480"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature order(152958..152960,153177..153179,153186..153209)
/gene="truA"
/locus_tag="BSU01480"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature order(153084..153095,153528..153530)
/gene="truA"
/locus_tag="BSU01480"
/note="active site"
/db_xref="CDD:211337"
gene 153737..153793
/locus_tag="BSU_misc_RNA_4"
/db_xref="GeneID:8303111"
misc_RNA 153737..153793
/locus_tag="BSU_misc_RNA_4"
/product="L13_leader"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:8303111"
gene 153842..154279
/gene="rplM"
/locus_tag="BSU01490"
/db_xref="GeneID:938915"
CDS 153842..154279
/gene="rplM"
/locus_tag="BSU01490"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="in Escherichia coli this protein is one of the
earliest assembly proteins in the large subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="NP_388030.2"
/db_xref="GI:255767038"
/db_xref="GeneID:938915"
/translation="MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPT
YTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKML
ELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG"
misc_feature 153887..154228
/gene="rplM"
/locus_tag="BSU01490"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:238230"
misc_feature order(153914..153916,153920..153925,153932..153934,
153941..153943,153953..153955,154037..154039,
154043..154045,154127..154132,154148..154156,
154160..154168,154172..154180,154184..154186,
154190..154192,154202..154204,154211..154216)
/gene="rplM"
/locus_tag="BSU01490"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238230"
misc_feature 154130..154132
/gene="rplM"
/locus_tag="BSU01490"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:238230"
gene 154300..154692
/gene="rpsI"
/locus_tag="BSU01500"
/db_xref="GeneID:938912"
CDS 154300..154692
/gene="rpsI"
/locus_tag="BSU01500"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="forms a direct contact with the tRNA during
translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="NP_388031.1"
/db_xref="GI:16077218"
/db_xref="GeneID:938912"
/translation="MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAAL
IEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAG
LLTRDARMKERKKYGLKGARRAPQFSKR"
misc_feature 154300..154689
/gene="rpsI"
/locus_tag="BSU01500"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene 155156..155923
/gene="ybaJ"
/locus_tag="BSU01510"
/db_xref="GeneID:938919"
CDS 155156..155923
/gene="ybaJ"
/locus_tag="BSU01510"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_388032.2"
/db_xref="GI:255767039"
/db_xref="GeneID:938919"
/translation="MNALVAHNSKAWDKKVETGNEWTVAVEQQVIEQAKKGNWDIRVT
PMKDVPKDWFPPIKGLKVLCLASGGGQQGPVLAAAGADVTVLDNSEKQLNQDRMIAER
DGLTIHTVKGSMDDLSVFNDESFDVIVHPVANVFVENVLPVWKEAYRVLKRNGILISG
FVNPVVFLFDTELEQQGVLKVKHSIPYADPEDLPKHKVKKLIENNEALEFGHSLEDQI
KGQIDAGFIVTGFYEDKGGFVLDQYIHTYSATRSVKV"
misc_feature 155327..>155629
/gene="ybaJ"
/locus_tag="BSU01510"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:222415"
misc_feature 155336..155641
/gene="ybaJ"
/locus_tag="BSU01510"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(155348..155368,155414..155419,155489..155497)
/gene="ybaJ"
/locus_tag="BSU01510"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 156109..156552
/gene="ybaK"
/locus_tag="BSU01520"
/db_xref="GeneID:938916"
CDS 156109..156552
/gene="ybaK"
/locus_tag="BSU01520"
/function="16.8: Protect"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 14679227, 16267290; Product type pe:
enzyme"
/codon_start=1
/transl_table=11
/product="alkylated deoxynucleotide triphosphohydrolase"
/protein_id="NP_388033.1"
/db_xref="GI:16077220"
/db_xref="GeneID:938916"
/translation="MAEVLSFMDVKRQKDFELEKNLLKELSLRQIIQSVKDCLEPLFP
FLHDERDIITEGCIDFAIEAYLLGGRFGIFGYYGESMQSISARSAREEEELRMEFFDY
LYNWIHEQYATFDKNTVYEAARKFIKDWWTAGFVQREKQCKLRMR"
misc_feature 156109..156549
/gene="ybaK"
/locus_tag="BSU01520"
/note="Protein of unknown function (DUF2521); Region:
DUF2521; pfam10730"
/db_xref="CDD:151215"
gene 156612..157325
/gene="cwlD"
/locus_tag="BSU01530"
/db_xref="GeneID:938917"
CDS 156612..157325
/gene="cwlD"
/locus_tag="BSU01530"
/EC_number="3.5.1.28"
/function="16.8: Protect"
/function="16.6: Maintain"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 14679227, 16267290;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="NP_388034.1"
/db_xref="GI:16077221"
/db_xref="GeneID:938917"
/translation="MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIY
LDPGHGGPDGGAVGGKLLEKDVTLEVAFRVRDYLQEQGALVIMTRESDTDLAPEGTKG
YSRRKAEDLRQRVKLINHSEAELYISIHLNAIPSQKWSGAQSFYYGKYAENEKVAKYI
QDELRRNLENTTRKAKRIHGIYLMQNVTKPGALIEVGFLSNPSEATLLGKPKYQDKVA
SSIYKGILRYFTEKGDPPE"
misc_feature 156705..157301
/gene="cwlD"
/locus_tag="BSU01530"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:223929"
misc_feature 156735..157289
/gene="cwlD"
/locus_tag="BSU01530"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(156756..156758,156798..156800,156999..157001,
157194..157196)
/gene="cwlD"
/locus_tag="BSU01530"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(156756..156758,156798..156800,156999..157001)
/gene="cwlD"
/locus_tag="BSU01530"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene 157421..158479
/gene="salA"
/locus_tag="BSU01540"
/db_xref="GeneID:938914"
CDS 157421..158479
/gene="salA"
/locus_tag="BSU01540"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11790741, 15126467;
Product type r: regulator"
/codon_start=1
/transl_table=11
/product="Mrp family regulator"
/protein_id="NP_388035.1"
/db_xref="GI:16077222"
/db_xref="GeneID:938914"
/translation="MIREDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVK
VALAKTGTAEQMQIQQEIVNVLKGAGAETVGLRFEELPEETVAKFRAPSAEKKTLLNM
DNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRP
TIEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVL
DLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENMA
YYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWDKDQFAPSVYDENHPIG
EIYQDIAKKIDAKMSVQV"
misc_feature <157796..158365
/gene="salA"
/locus_tag="BSU01540"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Mrp;
COG0489"
/db_xref="CDD:223563"
misc_feature 157796..158362
/gene="salA"
/locus_tag="BSU01540"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:238994"
gene complement(158515..159072)
/gene="gerD"
/locus_tag="BSU01550"
/db_xref="GeneID:938910"
CDS complement(158515..159072)
/gene="gerD"
/locus_tag="BSU01550"
/function="16.13: Shape"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 17122337, 10618233,
10376819; Product type f: factor"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="NP_388036.1"
/db_xref="GI:16077223"
/db_xref="GeneID:938910"
/translation="MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKT
DDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFA
KTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETL
SSPLYKKQFEDELKKAAKDTAKESE"
gene 159182..159778
/gene="kbaA"
/locus_tag="BSU01560"
/db_xref="GeneID:938913"
CDS 159182..159778
/gene="kbaA"
/locus_tag="BSU01560"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15849754, 16850406,
8576055; Product type r: regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388037.1"
/db_xref="GI:16077224"
/db_xref="GeneID:938913"
/translation="MKSRGLVRFFFSILAVGALITSIVGFALKWGEYRGLFLTFEAGQ
IFSVLFWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDL
MYVRFLFFGESGESLAGYAWLPVFLLIFGVITAYIKQKQSSKKTFVSSLFLMVVITAL
EWFPALRVNDEDWLYLMLFPLMACNAFQLLMLPKFAAK"
misc_feature 159230..159766
/gene="kbaA"
/locus_tag="BSU01560"
/note="KinB-signalling pathway activation in sporulation;
Region: KbaA; pfam14089"
/db_xref="CDD:206259"
gene complement(159779..160543)
/gene="ybaN"
/locus_tag="BSU01570"
/db_xref="GeneID:938911"
CDS complement(159779..160543)
/gene="ybaN"
/locus_tag="BSU01570"
/function="16.13: Shape"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12662922, 15547282;
Product type ph: phenotype"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="NP_388038.1"
/db_xref="GI:16077225"
/db_xref="GeneID:938911"
/translation="MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDT
GPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDT
VARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQT
EEALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK"
misc_feature complement(159812..160543)
/gene="ybaN"
/locus_tag="BSU01570"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:223798"
misc_feature complement(159809..160384)
/gene="ybaN"
/locus_tag="BSU01570"
/note="Putative catalytic NodB homology domain of Bacillus
subtilis putative polysaccharide deacetylase PdaB, and its
bacterial homologs; Region: CE4_BsPdaB_like; cd10949"
/db_xref="CDD:200573"
misc_feature complement(order(159914..159916,159920..159922,
159989..159994,160010..160012,160073..160078,
160082..160084,160181..160198,160349..160360))
/gene="ybaN"
/locus_tag="BSU01570"
/note="NodB motif; other site"
/db_xref="CDD:200573"
misc_feature complement(order(159914..159916,159920..159922,
160010..160012,160070..160078,160184..160186,
160196..160198,160349..160354))
/gene="ybaN"
/locus_tag="BSU01570"
/note="putative active site [active]"
/db_xref="CDD:200573"
misc_feature complement(order(159914..159916,159992..159994,
160082..160084,160352..160354))
/gene="ybaN"
/locus_tag="BSU01570"
/note="putative catalytic site [active]"
/db_xref="CDD:200573"
gene 160893..162445
/gene="rrnI-16S"
/locus_tag="BSU_rRNA_23"
/db_xref="GeneID:938908"
rRNA 160893..162445
/gene="rrnI-16S"
/locus_tag="BSU_rRNA_23"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938908"
gene 162610..165535
/gene="rrnI-23S"
/locus_tag="BSU_rRNA_14"
/db_xref="GeneID:938905"
rRNA 162610..165535
/gene="rrnI-23S"
/locus_tag="BSU_rRNA_14"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938905"
gene 165591..165707
/gene="rrnI-5S"
/locus_tag="BSU_rRNA_15"
/db_xref="GeneID:938909"
rRNA 165591..165707
/gene="rrnI-5S"
/locus_tag="BSU_rRNA_15"
/product="ribosomal RNA-5S"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938909"
gene 165754..165825
/gene="trnI-Asn"
/locus_tag="BSU_tRNA_23"
/db_xref="GeneID:2914257"
tRNA 165754..165825
/gene="trnI-Asn"
/locus_tag="BSU_tRNA_23"
/product="tRNA-Asn"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914257"
gene 165830..165902
/gene="trnI-Thr"
/locus_tag="BSU_tRNA_24"
/db_xref="GeneID:2914258"
tRNA 165830..165902
/gene="trnI-Thr"
/locus_tag="BSU_tRNA_24"
/product="tRNA-Thr"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914258"
gene 165959..166033
/gene="trnI-Gly"
/locus_tag="BSU_tRNA_25"
/db_xref="GeneID:938904"
tRNA 165959..166033
/gene="trnI-Gly"
/locus_tag="BSU_tRNA_25"
/product="tRNA-Gly"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938904"
gene 166064..166140
/gene="trnI-Arg"
/locus_tag="BSU_tRNA_26"
/db_xref="GeneID:938903"
tRNA 166064..166140
/gene="trnI-Arg"
/locus_tag="BSU_tRNA_26"
/product="tRNA-Arg"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938903"
gene 166168..166244
/gene="trnI-Pro"
/locus_tag="BSU_tRNA_27"
/db_xref="GeneID:938902"
tRNA 166168..166244
/gene="trnI-Pro"
/locus_tag="BSU_tRNA_27"
/product="tRNA-Pro"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938902"
gene 166253..166328
/gene="trnI-Ala"
/locus_tag="BSU_tRNA_28"
/db_xref="GeneID:2914261"
tRNA 166253..166328
/gene="trnI-Ala"
/locus_tag="BSU_tRNA_28"
/product="tRNA-Ala"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914261"
gene 166500..168053
/gene="rrnH-16S"
/locus_tag="BSU_rRNA_16"
/db_xref="GeneID:938899"
rRNA 166500..168053
/gene="rrnH-16S"
/locus_tag="BSU_rRNA_16"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938899"
gene 168218..171141
/gene="rrnH-23S"
/locus_tag="BSU_rRNA_29"
/db_xref="GeneID:938896"
rRNA 168218..171141
/gene="rrnH-23S"
/locus_tag="BSU_rRNA_29"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938896"
gene 171197..171314
/gene="rrnH-5S"
/locus_tag="BSU_rRNA_24"
/db_xref="GeneID:938894"
rRNA 171197..171314
/gene="rrnH-5S"
/locus_tag="BSU_rRNA_24"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938894"
gene 171498..173049
/gene="rrnG-16S"
/locus_tag="BSU_rRNA_25"
/db_xref="GeneID:938898"
rRNA 171498..173049
/gene="rrnG-16S"
/locus_tag="BSU_rRNA_25"
/product="ribosomal RNA-16S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938898"
gene 173214..176141
/gene="rrnG-23S"
/locus_tag="BSU_rRNA_27"
/db_xref="GeneID:938897"
rRNA 173214..176141
/gene="rrnG-23S"
/locus_tag="BSU_rRNA_27"
/product="ribosomal RNA-23S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:938897"
gene 176197..176315
/gene="rrnG-5S"
/locus_tag="BSU_rRNA_28"
/db_xref="GeneID:2914262"
rRNA 176197..176315
/gene="rrnG-5S"
/locus_tag="BSU_rRNA_28"
/product="ribosomal RNA-5S"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:2914262"
gene 177083..178519
/gene="ybaR"
/locus_tag="BSU01580"
/db_xref="GeneID:938890"
CDS 177083..178519
/gene="ybaR"
/locus_tag="BSU01580"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type m:
membrane component"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="NP_388039.1"
/db_xref="GI:16077226"
/db_xref="GeneID:938890"
/translation="MNNSFTLKQQWFGNIRKDILAGILVALALIPEAIGFSIIAGVDP
MVGLYASFCIAIIISIFGGRPGMISAATGSMAVVMVSLVADHGLQYLFAATILTGIIQ
VILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYAMLAGSLVIIY
VLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNISSSLPHFLIPDVPFTFETL
QIIFPYSIALAFVGLLESLLTAQIIDEMTDTDSDKNKESRGQGIANIVTGFFGGMAGC
AMIGQSVINTKAGGRGRLSAFVAGAFLMFLIAVLSHVVVKIPMAALVAVMVMVSVGTF
DWSSLKGLKKAPLTDSIVMVVTVVTVVVTDDLSKGVFVGVLLSAVFFVAKISKLKIVS
HAEDQKLRTYQVKGQIFFASVTDLTNAFIYQEDIERVVIDLTEAHVWDDSGAAALDKI
VAKFKEQGIEAELKGLNKASKSLMKQMA"
misc_feature 177083..178516
/gene="ybaR"
/locus_tag="BSU01580"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:223732"
misc_feature 177098..177331
/gene="ybaR"
/locus_tag="BSU01580"
/note="Sulfate transporter N-terminal domain with GLY
motif; Region: Sulfate_tra_GLY; pfam13792"
/db_xref="CDD:205965"
misc_feature 177395..178135
/gene="ybaR"
/locus_tag="BSU01580"
/note="Sulfate transporter family; Region: Sulfate_transp;
pfam00916"
/db_xref="CDD:216188"
misc_feature 178265..178513
/gene="ybaR"
/locus_tag="BSU01580"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist domain of SulP-like sulfate transporters, plays
a role in the function and regulation of the transport
activity, proposed general NTP binding function; Region:
STAS_SulP_like_sulfate_transporter; cd07042"
/db_xref="CDD:132913"
gene 178665..179585
/gene="ybaS"
/locus_tag="BSU01590"
/db_xref="GeneID:938892"
CDS 178665..179585
/gene="ybaS"
/locus_tag="BSU01590"
/function="7: Transport and binding proteins"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="sodium dependent transporter"
/protein_id="NP_388040.2"
/db_xref="GI:255767040"
/db_xref="GeneID:938892"
/translation="MPLLTPTSVVLGVLLSQFLNGYEWAVPWIFAFITFAGSLSANFQ
SLRHALSHPLPMILALFVLHIFMPLFAWGSGHLIFKGDPLTITGLTLAVVIPTGITSL
IWAAMYKGNVGLTLSIILVDTVLSPLIVPLSLSLLAGAQVHMDVWGMMKGLIVMVVIP
SFLGMLFNQMSSPERTAFVSSALSPFSKLCLMAVIAINSSAIAPYFKSIDLRFAGIAV
TVFFIALTGYAAAWLIGKMMKRRQEEIVSLIFTGGMRNISAGAVLAVTFFPSQVAVPV
VIGMLFQQILAALFGYMLNRFELKPMLQKA"
misc_feature 178665..179582
/gene="ybaS"
/locus_tag="BSU01590"
/note="Predicted Na+-dependent transporter [General
function prediction only]; Region: COG0385"
/db_xref="CDD:223462"
misc_feature 178758..179291
/gene="ybaS"
/locus_tag="BSU01590"
/note="Sodium Bile acid symporter family; Region: SBF;
cl17470"
/db_xref="CDD:248024"
gene complement(179595..180347)
/gene="ybbA"
/locus_tag="BSU01600"
/db_xref="GeneID:938887"
CDS complement(179595..180347)
/gene="ybbA"
/locus_tag="BSU01600"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12354229, 2974033; Product type pe:
enzyme"
/codon_start=1
/transl_table=11
/product="iron-chelator esterase"
/protein_id="NP_388041.2"
/db_xref="GI:255767041"
/db_xref="GeneID:938887"
/translation="MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQN
QIELLESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDIT
NQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENA
AETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTEDQLCL
SIEKGAVHHHKYFCKQFINALEWLYGKNRSTL"
misc_feature complement(179604..180311)
/gene="ybbA"
/locus_tag="BSU01600"
/note="Predicted hydrolase of the alpha/beta superfamily
[General function prediction only]; Region: COG2819"
/db_xref="CDD:225375"
gene complement(180344..181354)
/gene="feuC"
/locus_tag="BSU01610"
/db_xref="GeneID:938893"
CDS complement(180344..181354)
/gene="feuC"
/locus_tag="BSU01610"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 15849754, 16850406, 2651410; Product type t :
transporter"
/codon_start=1
/transl_table=11
/product="iron-uptake protein"
/protein_id="NP_388042.2"
/db_xref="GI:255767042"
/db_xref="GeneID:938893"
/translation="MAKKYALFIALILVVSYFSLTSGSFSVRPAELLSTLFQIDPNPQ
YEILLFDLRLPRVVMAAIIGLGLGIAGAVIQAITRNGLADPGILGINAGAGAGIVAFM
LLFQGQKEVTSIAAAMGMPLFGLIGGLIAAILIYIFAWHRGNLDSGRIILVGIAINSG
FSALSLFLSLKMDPQDYQMAMVWKNGSIWSANWTYITAVLPWMLLFIPILIGKSRLLD
TIRFDEDTVRSLGISSNKEKTILLVACVAIISACVSVAGSMAFVGLIAPHISRRLAGV
EHRYILPLSGLIGMLLVISADFAGKLFFQPAEVPAGIILAILGVPYFLYLLFKQKKGE
NA"
misc_feature complement(180359..181342)
/gene="feuC"
/locus_tag="BSU01610"
/note="ABC-type enterobactin transport system, permease
component [Inorganic ion transport and metabolism];
Region: FepG; COG4779"
/db_xref="CDD:227119"
misc_feature complement(180374..>180931)
/gene="feuC"
/locus_tag="BSU01610"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(180374..180376,180383..180388,
180395..180397,180404..180409,180416..180418,
180572..180574,180800..180802,180809..180814,
180848..180850,180854..180859,180866..180868,
180875..180880,180887..180892,180899..180904,
180908..180910))
/gene="feuC"
/locus_tag="BSU01610"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(180425..180427,180452..180454,
180584..180586,180596..180598,180770..180772,
180848..180850))
/gene="feuC"
/locus_tag="BSU01610"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature complement(order(180521..180523,180542..180544,
180665..180673,180677..180694,180698..180703,
180707..180715,180719..180724))
/gene="feuC"
/locus_tag="BSU01610"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
gene complement(181347..182351)
/gene="feuB"
/locus_tag="BSU01620"
/db_xref="GeneID:938884"
CDS complement(181347..182351)
/gene="feuB"
/locus_tag="BSU01620"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 15849754, 16850406, 2651410; Product type t :
transporter"
/codon_start=1
/transl_table=11
/product="iron-uptake protein"
/protein_id="NP_388043.1"
/db_xref="GI:16077230"
/db_xref="GeneID:938884"
/translation="MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIH
FDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAF
IITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMMPNGFTPVQLAIIGTVTSML
LSSLSAAMSIYFQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKKVTAV
SLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDY
SRLIPCSCILGGIFLTLCDLASRFINYPFETPIEVVTSIIGVPFFLYLIKRKGGEQNG
"
misc_feature complement(<181371..182255)
/gene="feuB"
/locus_tag="BSU01620"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
misc_feature complement(<182016..182228)
/gene="feuB"
/locus_tag="BSU01620"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:241879"
misc_feature complement(181377..182114)
/gene="feuB"
/locus_tag="BSU01620"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(181524..181526,181545..181547,
181668..181676,181680..181697,181701..181706,
181710..181718,181722..181727,182091..182099,
182109..182111))
/gene="feuB"
/locus_tag="BSU01620"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(181377..181379,181386..181391,
181398..181400,181407..181412,181419..181421,
181575..181577,181803..181805,181812..181817,
181845..181847,181851..181856,181863..181865,
181872..181877,181884..181889,181896..181901,
181905..181907,182073..182075,182088..182090,
182094..182096))
/gene="feuB"
/locus_tag="BSU01620"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(181428..181430,181455..181457,
181587..181589,181599..181601,181773..181775,
181845..181847))
/gene="feuB"
/locus_tag="BSU01620"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(182370..183323)
/gene="feuA"
/locus_tag="BSU01630"
/db_xref="GeneID:938891"
CDS complement(182370..183323)
/gene="feuA"
/locus_tag="BSU01630"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 8388528; Product type lp:
lipoprotein"
/codon_start=1
/transl_table=11
/product="iron hydroxamate-binding lipoprotein"
/protein_id="NP_388044.1"
/db_xref="GI:16077231"
/db_xref="GeneID:938891"
/translation="MKKISLTLLILLLALTAAACGSKNESTASKASGTASEKKKIEYL
DKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFSGKFPDMFKDITDKAEPTGE
KMEPNIEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLT
GKEKKAKKIIADYEQDLKEIKTKINDKAKDSKALVIRIRQGNIYIYPEQVYFNSTLYG
DLGLKAPNEVKAAKAQELSSLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIWK
SLKAVKEDHVYVNSVDPLAQGGTAWSKVRFLKAAAEKLTQN"
misc_feature complement(182373..183266)
/gene="feuA"
/locus_tag="BSU01630"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature complement(182433..183182)
/gene="feuA"
/locus_tag="BSU01630"
/note="Periplasmic binding protein FeuA. These proteins
have predicted to function as initial receptors in ABC
transport of metal ions in some eubacterial species. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct...; Region: FeuA;
cd01138"
/db_xref="CDD:238558"
misc_feature complement(order(182622..182624,182712..182714,
182952..182954,182958..182960,183015..183017,
183078..183080,183132..183137))
/gene="feuA"
/locus_tag="BSU01630"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:238558"
gene complement(183414..185003)
/gene="ybbB"
/locus_tag="BSU01640"
/db_xref="GeneID:938888"
CDS complement(183414..185003)
/gene="ybbB"
/locus_tag="BSU01640"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="NP_388045.1"
/db_xref="GI:16077232"
/db_xref="GeneID:938888"
/translation="MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYIS
IGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESE
LAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRIT
KAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGT
MGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPD
VIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQ
TTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAI
SLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEY
SACGHERIVQQTVSLLSGDCP"
misc_feature complement(184218..184469)
/gene="ybbB"
/locus_tag="BSU01640"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(184215..184328)
/gene="ybbB"
/locus_tag="BSU01640"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature complement(183468..184235)
/gene="ybbB"
/locus_tag="BSU01640"
/note="Periplasmic binding protein FeuA. These proteins
have predicted to function as initial receptors in ABC
transport of metal ions in some eubacterial species. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct...; Region: FeuA;
cd01138"
/db_xref="CDD:238558"
misc_feature complement(183504..184199)
/gene="ybbB"
/locus_tag="BSU01640"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:216532"
misc_feature complement(order(183663..183665,183756..183758,
183981..183983,183987..183989,184065..184067,
184125..184127,184179..184184))
/gene="ybbB"
/locus_tag="BSU01640"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:238558"
gene complement(185194..186438)
/gene="ybbC"
/locus_tag="BSU01650"
/db_xref="GeneID:938889"
CDS complement(185194..186438)
/gene="ybbC"
/locus_tag="BSU01650"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388046.1"
/db_xref="GI:16077233"
/db_xref="GeneID:938889"
/translation="MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTL
LPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAG
DEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAM
EAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFN
KEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNIS
EGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQL
YVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVEN
IINSYEKTLQQFSKTRKKYLIY"
misc_feature complement(185197..186438)
/gene="ybbC"
/locus_tag="BSU01650"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3876"
/db_xref="CDD:226393"
gene complement(186452..188380)
/gene="ybbD"
/locus_tag="BSU01660"
/db_xref="GeneID:938881"
CDS complement(186452..188380)
/gene="ybbD"
/locus_tag="BSU01660"
/EC_number="3.2.1.52"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 8063094; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="beta-hexosaminidase"
/protein_id="NP_388047.1"
/db_xref="GI:16077234"
/db_xref="GeneID:938881"
/translation="MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSL
DEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQT
VQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIAS
ALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAF
DDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEA
VVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISL
KIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPK
KGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEAD
YIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRNPY
DAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPG
NTLYPLGYGLNIKTGRPL"
misc_feature complement(186986..188257)
/gene="ybbD"
/locus_tag="BSU01660"
/note="Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism]; Region: BglX; COG1472"
/db_xref="CDD:224389"
misc_feature complement(187205..188254)
/gene="ybbD"
/locus_tag="BSU01660"
/note="Glycosyl hydrolase family 3 N terminal domain;
Region: Glyco_hydro_3; pfam00933"
/db_xref="CDD:216204"
misc_feature complement(186467..187078)
/gene="ybbD"
/locus_tag="BSU01660"
/note="Glycosyl hydrolase family 3 C-terminal domain;
Region: Glyco_hydro_3_C; pfam01915"
/db_xref="CDD:216783"
gene complement(188408..189733)
/gene="ybbE"
/locus_tag="BSU01670"
/db_xref="GeneID:938886"
CDS complement(188408..189733)
/gene="ybbE"
/locus_tag="BSU01670"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16452451; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388048.2"
/db_xref="GI:255767043"
/db_xref="GeneID:938886"
/translation="MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQF
STKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMK
TRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYM
LLGCIVEKLTGKPLDVYTEQELYKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGV
IQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILLQVMLNKGSYRNISL
FDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDP
AYNLGIALLTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME"
misc_feature complement(188411..189727)
/gene="ybbE"
/locus_tag="BSU01670"
/note="putative periplasmic esterase; Provisional; Region:
PRK03642"
/db_xref="CDD:179620"
misc_feature complement(188435..189727)
/gene="ybbE"
/locus_tag="BSU01670"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:224594"
gene complement(189790..191157)
/gene="ybbF"
/locus_tag="BSU01680"
/db_xref="GeneID:938879"
CDS complement(189790..191157)
/gene="ybbF"
/locus_tag="BSU01680"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406, 10627040; Product
type pt: transporter"
/codon_start=1
/transl_table=11
/product="sugar phosphotransferase enzyme II"
/protein_id="NP_388049.3"
/db_xref="GI:255767044"
/db_xref="GeneID:938879"
/translation="MSKENNYHHLAQKILELCGGKSNISSYTHCMTRLRITPYDESKA
DAQALRKLDGVLGVVEAETLQIILGTGVVNHVTAAFSKLVSAEEGADVKEAAAKKKAD
INRKNATPFKLFLRKIASIFIPLIPALVASGLITGITKAIIQAGWLSADSQIAIILTV
IGSGLFTYLGILVGINASKEFGGTPALGALAGILIINPEIAKISLFGEELLPGRGGLI
GVLFAAIFIAYTEQFIRRFIPQSLDIIVTPTVSLLITGIVTYVVFMPLGGFISDAITS
GLLSILDIGGIAAGFILGATFLPLVVTGLHQGLTPVHMELINSIGNDPLLPILAMGGA
GQVGAAFAVFVKTKKTTLRKAIAGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGI
GGAFQAYFQVATIAIGVSGLPLSFLVLPSQIILYIVGLFISYAAGFLLTYAFGYKDEM
ASQFD"
misc_feature complement(189826..191142)
/gene="ybbF"
/locus_tag="BSU01680"
/note="PTS system, sucrose-specific IIBC component;
Region: PTS-II-BC-sucr; TIGR01996"
/db_xref="CDD:131051"
misc_feature complement(190936..191136)
/gene="ybbF"
/locus_tag="BSU01680"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:238130"
misc_feature complement(191053..191073)
/gene="ybbF"
/locus_tag="BSU01680"
/note="active site turn [active]"
/db_xref="CDD:238130"
misc_feature complement(191068..191070)
/gene="ybbF"
/locus_tag="BSU01680"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238130"
misc_feature complement(189808..190845)
/gene="ybbF"
/locus_tag="BSU01680"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:224183"
gene complement(191183..192034)
/gene="ybbH"
/locus_tag="BSU01690"
/db_xref="GeneID:938885"
CDS complement(191183..192034)
/gene="ybbH"
/locus_tag="BSU01690"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_388050.1"
/db_xref="GI:16077237"
/db_xref="GeneID:938885"
/translation="MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISA
LANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAG
NAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQAT
AFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSV
SALADVPLYTAHSNEALIRSAATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAA
IQSMRIK"
misc_feature complement(191798..192028)
/gene="ybbH"
/locus_tag="BSU01690"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature complement(191189..192019)
/gene="ybbH"
/locus_tag="BSU01690"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature complement(191264..191683)
/gene="ybbH"
/locus_tag="BSU01690"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:240144"
misc_feature complement(order(191480..191482,191612..191614))
/gene="ybbH"
/locus_tag="BSU01690"
/note="putative active site [active]"
/db_xref="CDD:240144"
gene complement(192051..192965)
/gene="murQ"
/locus_tag="BSU01700"
/db_xref="GeneID:938882"
CDS complement(192051..192965)
/gene="murQ"
/locus_tag="BSU01700"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the cleavage of the lactyl ether moiety
of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form
N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate;
involved in MurNAc dissimilation pathway"
/codon_start=1
/transl_table=11
/product="N-acetylmuramic acid 6-phosphate etherase"
/protein_id="NP_388051.1"
/db_xref="GI:16077238"
/db_xref="GeneID:938882"
/translation="MSEPLNLHRLTTESRNSQTVEIHKANTLGILKMINNEDMKVAAA
VQEVLPDIKTAVDCAYESFQNGGRLIYTGAGTSGRLGVMDAVECPPTYSVSPDQVIGI
MAGGPEAFLQAAEGIEDSEEAGAEDLRNIQLTSNDTVIAIAASGRTPYAAGALRYARK
VGAHTIALTCNENSAISKDADHSIEVVVGPEAITGSTRMKAATAHKMILNMISTAVMV
KIGKVYENLMVDVNVSNKKLKERAISIIQSLTNASYDTARYTLEQADHHVKTAIVMLK
TSTDQKQAQTLLDEANGFIDKAIEHYHP"
misc_feature complement(192066..192938)
/gene="murQ"
/locus_tag="BSU01700"
/note="N-acetylmuramic acid 6-phosphate etherase; Region:
TIGR00274"
/db_xref="CDD:129375"
misc_feature complement(192144..192914)
/gene="murQ"
/locus_tag="BSU01700"
/note="N-acetylmuramic acid 6-phosphate etherase. Members
of this family contain the SIS (Sugar ISomerase) domain.
The SIS domain is found in many phosphosugar isomerases
and phosphosugar binding proteins. The bacterial cell wall
sugar N-acetylmuramic acid...; Region: SIS_Etherase;
cd05007"
/db_xref="CDD:240140"
misc_feature complement(order(192537..192539,192735..192737))
/gene="murQ"
/locus_tag="BSU01700"
/note="putative active site [active]"
/db_xref="CDD:240140"
gene complement(193075..193557)
/gene="ybbJ"
/locus_tag="BSU01710"
/db_xref="GeneID:938883"
CDS complement(193075..193557)
/gene="ybbJ"
/locus_tag="BSU01710"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="NP_388052.2"
/db_xref="GI:255767045"
/db_xref="GeneID:938883"
/translation="MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLPKEVLSQALGI
QDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAM
LLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIGPLGEQLILHHFL
"
misc_feature complement(193141..193557)
/gene="ybbJ"
/locus_tag="BSU01710"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_8; pfam13523"
/db_xref="CDD:222196"
gene complement(193570..194025)
/gene="ybbK"
/locus_tag="BSU01720"
/db_xref="GeneID:938877"
CDS complement(193570..194025)
/gene="ybbK"
/locus_tag="BSU01720"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388053.2"
/db_xref="GI:255767046"
/db_xref="GeneID:938877"
/translation="MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGG
FSTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVIL
KENSPSCGSGFIYNGTFSGKKITGSGVTAALLKQAGYRVISENELNDIL"
misc_feature complement(193576..194025)
/gene="ybbK"
/locus_tag="BSU01720"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1683"
/db_xref="CDD:224597"
gene 194205..194279
/gene="trnSL-Glu2"
/locus_tag="BSU_tRNA_75"
/db_xref="GeneID:8303028"
tRNA 194205..194279
/gene="trnSL-Glu2"
/locus_tag="BSU_tRNA_75"
/product="tRNA-Glu"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:8303028"
gene 194283..194358
/gene="trnSL-Val1"
/locus_tag="BSU_tRNA_78"
/db_xref="GeneID:8302937"
tRNA 194283..194358
/gene="trnSL-Val1"
/locus_tag="BSU_tRNA_78"
/product="tRNA-Val"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:8302937"
gene 194363..194435
/gene="trnSL-Thr1"
/locus_tag="BSU_tRNA_76"
/db_xref="GeneID:8303065"
tRNA 194363..194435
/gene="trnSL-Thr1"
/locus_tag="BSU_tRNA_76"
/product="tRNA-Thr"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:8303065"
gene 194458..194542
/gene="trnSL-Tyr1"
/locus_tag="BSU_tRNA_77"
/db_xref="GeneID:8303046"
tRNA 194458..194542
/gene="trnSL-Tyr1"
/locus_tag="BSU_tRNA_77"
/product="tRNA-Tyr"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:8303046"
gene 194547..194621
/gene="trnSL-Gln2"
/locus_tag="BSU_tRNA_74"
/db_xref="GeneID:8303064"
tRNA 194547..194621
/gene="trnSL-Gln2"
/locus_tag="BSU_tRNA_74"
/product="tRNA-Gln"
/inference="profile:tRNAscan:1.23"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type n: RNA"
/function="16.2: Construct biomass (Anabolism)"
/db_xref="GeneID:8303064"
gene 194849..195412
/gene="sigW"
/locus_tag="BSU01730"
/db_xref="GeneID:938868"
CDS 194849..195412
/gene="sigW"
/locus_tag="BSU01730"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Member of the extracytoplasmic function sigma
factors which are active under specific conditions; binds
with the catalytic core of RNA polymerase to produce the
holoenzyme and directs bacterial core RNA polymerase to
specific promoter elements to initiate transcription: this
protein is involved in detoxification and protection
against antimicrobial"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor SigW"
/protein_id="NP_388054.1"
/db_xref="GI:16077241"
/db_xref="GeneID:938868"
/translation="MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHE
AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTE
GLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE
ILNIPVGTVKTRIHRGREALRKQLRDL"
misc_feature 194849..195409
/gene="sigW"
/locus_tag="BSU01730"
/note="RNA polymerase sigma factor SigW; Provisional;
Region: PRK09641"
/db_xref="CDD:182012"
misc_feature 194915..195115
/gene="sigW"
/locus_tag="BSU01730"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature 195236..195391
/gene="sigW"
/locus_tag="BSU01730"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(195260..195262,195290..195292,195308..195313,
195341..195343,195347..195352,195356..195364,
195368..195373,195377..195379)
/gene="sigW"
/locus_tag="BSU01730"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 195426..196052
/gene="rsiW"
/locus_tag="BSU01740"
/db_xref="GeneID:938876"
CDS 195426..196052
/gene="rsiW"
/locus_tag="BSU01740"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15130127; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="anti-sigma(W) factor"
/protein_id="NP_388055.1"
/db_xref="GI:16077242"
/db_xref="GeneID:938876"
/translation="MSCPEQIVQLMHMHLDGDILPKDEHVLNEHLETCEKCRKHFYEM
EKSIALVRSTSHVEAPADFTANVMAKLPKEKKRASVKRWFRTHPVIAAAAVFIILMGG
GFFNSWHNDHNFSVSKQPNLVVHNHTVTVPEGETVKGDVTVKNGKLIIKGKIDGDVTV
VNGEKYMASAGQVTGQIEEINQLFDWTWYKMKSAGKSVLDAFNPNGEE"
misc_feature 195426..196049
/gene="rsiW"
/locus_tag="BSU01740"
/note="Predicted transmembrane transcriptional regulator
(anti-sigma factor) [Transcription]; Region: COG5662"
/db_xref="CDD:227949"
misc_feature 195432..195539
/gene="rsiW"
/locus_tag="BSU01740"
/note="Putative zinc-finger; Region: zf-HC2; pfam13490"
/db_xref="CDD:222172"
misc_feature <195792..195956
/gene="rsiW"
/locus_tag="BSU01740"
/note="Polymer-forming cytoskeletal; Region: Bactofilin;
pfam04519"
/db_xref="CDD:218125"
gene 196213..197034
/gene="ybbP"
/locus_tag="BSU01750"
/db_xref="GeneID:938735"
CDS 196213..197034
/gene="ybbP"
/locus_tag="BSU01750"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388056.2"
/db_xref="GI:255767047"
/db_xref="GeneID:938735"
/translation="MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGI
VVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSG
TPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLI
NIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLT
IIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG"
misc_feature 196213..196947
/gene="ybbP"
/locus_tag="BSU01750"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1624"
/db_xref="CDD:224539"
misc_feature 196558..196923
/gene="ybbP"
/locus_tag="BSU01750"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
gene 197027..198478
/gene="ybbR"
/locus_tag="BSU01760"
/db_xref="GeneID:938867"
CDS 197027..198478
/gene="ybbR"
/locus_tag="BSU01760"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function; PubMedId: 16236721"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388057.2"
/db_xref="GI:255767048"
/db_xref="GeneID:938867"
/translation="MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPT
STTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADME
HLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYS
PEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVD
VEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLE
FIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTV
GLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVN
GPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNT
DKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE"
misc_feature 197027..198256
/gene="ybbR"
/locus_tag="BSU01760"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4856"
/db_xref="CDD:227193"
misc_feature 197189..197431
/gene="ybbR"
/locus_tag="BSU01760"
/note="YbbR-like protein; Region: YbbR; pfam07949"
/db_xref="CDD:219657"
misc_feature 197459..197710
/gene="ybbR"
/locus_tag="BSU01760"
/note="YbbR-like protein; Region: YbbR; pfam07949"
/db_xref="CDD:219657"
misc_feature 197735..197974
/gene="ybbR"
/locus_tag="BSU01760"
/note="YbbR-like protein; Region: YbbR; pfam07949"
/db_xref="CDD:219657"
gene 198497..199843
/gene="glmM"
/locus_tag="BSU01770"
/db_xref="GeneID:938632"
CDS 198497..199843
/gene="glmM"
/locus_tag="BSU01770"
/EC_number="5.4.2.10"
/function="16.13: Shape"
/function="16.2: Construct biomass (Anabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the conversion of glucosamine-6-phosphate
to glucosamine-1-phosphate"
/codon_start=1
/transl_table=11
/product="phosphoglucosamine mutase"
/protein_id="NP_388058.1"
/db_xref="GI:16077245"
/db_xref="GeneID:938632"
/translation="MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVL
IGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHN
PVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPVGADLGLVNDYFEGGQKYL
QFLKQTADEDFTGIHVALDCANGATSSLATHLFADLDADVSTMGTSPNGLNINDGVGS
THPEALSAFVKEKNADLGLAFDGDGDRLIAVDEKGNIVDGDQIMYICSKHLKSEGRLK
DDTVVSTVMSNLGFYKALEKEGIKSVQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLD
YNTTGDGLLSAIMLMNTLKATGKPLSELAAEMQKFPQLLVNVRVTDKYKVEENEKVKA
VISEVEKEMNGDGRILVRPSGTEPLVRVMAEAKTKELCDEYVNRIVEVVRSEMGLE"
misc_feature 198500..199840
/gene="glmM"
/locus_tag="BSU01770"
/note="phosphoglucosamine mutase; Provisional; Region:
glmM; PRK14316"
/db_xref="CDD:237670"
misc_feature 198506..199810
/gene="glmM"
/locus_tag="BSU01770"
/note="GlmM is a bacterial phosphoglucosamine mutase
(PNGM) that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in the
biosynthetic pathway of...; Region: GlmM; cd05802"
/db_xref="CDD:100095"
misc_feature order(198512..198514,198518..198520,198527..198529,
198794..198802,198824..198826,199214..199216,
199220..199222,199226..199231,199349..199351,
199412..199420,199469..199471,199475..199477,
199481..199483,199724..199726,199730..199738,
199751..199753)
/gene="glmM"
/locus_tag="BSU01770"
/note="active site"
/db_xref="CDD:100095"
misc_feature order(198518..198520,198794..198796,199229..199231,
199349..199351,199412..199414,199418..199420,
199469..199471,199475..199477,199481..199483,
199724..199726,199730..199738,199751..199753)
/gene="glmM"
/locus_tag="BSU01770"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100095"
misc_feature order(198794..198796,199214..199216,199220..199222,
199226..199228)
/gene="glmM"
/locus_tag="BSU01770"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100095"
gene 200017..200187
/locus_tag="BSU_misc_RNA_5"
/db_xref="GeneID:8302932"
misc_RNA 200017..200187
/locus_tag="BSU_misc_RNA_5"
/product="glmS"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:8302932"
gene 200277..202079
/gene="glmS"
/locus_tag="BSU01780"
/db_xref="GeneID:938736"
CDS 200277..202079
/gene="glmS"
/locus_tag="BSU01780"
/EC_number="2.6.1.16"
/function="16.2: Construct biomass (Anabolism)"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Catalyzes the first step in hexosamine metabolism,
converting fructose-6P into glucosamine-6P using glutamine
as a nitrogen source"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="NP_388059.1"
/db_xref="GI:16077246"
/db_xref="GeneID:938736"
/translation="MCGIVGYIGQLDAKEILLKGLEKLEYRGYDSAGIAVANEQGIHV
FKEKGRIADLREVVDANVEAKAGIGHTRWATHGEPSYLNAHPHQSALGRFTLVHNGVI
ENYVQLKQEYLQDVELKSDTDTEVVVQVIEQFVNGGLETEEAFRKTLTLLKGSYAIAL
FDNDNRETIFVAKNKSPLLVGLGDTFNVVASDAMAMLQVTNEYVELMDKEMVIVTDDQ
VVIKNLDGDVITRASYIAELDASDIEKGTYPHYMLKETDEQPVVMRKIIQTYQDENGK
LSVPGDIAAAVAEADRIYIIGCGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPL
LSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGP
EIAVASTKAYTAQIAVLAVLASVAADKNGINIGFDLVKELGIAANAMEALCDQKDEME
MIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEQ
GTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLDDADDRFVLPEVNPALAPL
VSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE"
misc_feature 200277..202076
/gene="glmS"
/locus_tag="BSU01780"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:234729"
misc_feature 200280..200918
/gene="glmS"
/locus_tag="BSU01780"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:238366"
misc_feature order(200280..200282,200355..200357,200490..200495,
200499..200504,200529..200531,200571..200576,
200643..200648)
/gene="glmS"
/locus_tag="BSU01780"
/note="glutaminase active site [active]"
/db_xref="CDD:238366"
misc_feature 201150..201494
/gene="glmS"
/locus_tag="BSU01780"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:240141"
misc_feature order(201168..201173,201201..201206,201213..201218,
201237..201239,201243..201245,201255..201257,
201264..201266,201330..201332)
/gene="glmS"
/locus_tag="BSU01780"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240141"
misc_feature order(201174..201179,201309..201317)
/gene="glmS"
/locus_tag="BSU01780"
/note="active site"
/db_xref="CDD:240141"
misc_feature 201615..202070
/gene="glmS"
/locus_tag="BSU01780"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:240142"
misc_feature order(201681..201683,201723..201725,201735..201737,
201741..201743,201747..201749,201753..201755,
201765..201767,201771..201779,201783..201794,
201843..201848,201858..201860,201864..201869,
202047..202052,202065..202067)
/gene="glmS"
/locus_tag="BSU01780"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240142"
misc_feature order(201717..201719,201726..201728)
/gene="glmS"
/locus_tag="BSU01780"
/note="active site"
/db_xref="CDD:240142"
gene complement(202547..203458)
/gene="alkA"
/locus_tag="BSU01800"
/db_xref="GeneID:938586"
CDS complement(202547..203458)
/gene="alkA"
/locus_tag="BSU01800"
/EC_number="3.2.2.21"
/function="16.8: Protect"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 7565865, 8376346; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="DNA-3-methyladenine glycosylase"
/protein_id="NP_388061.1"
/db_xref="GI:16077248"
/db_xref="GeneID:938586"
/translation="MTWHEVNDVIVITLPEIFDMNANLGYLTREKNECMYEIENNIIT
KVIAIGEIRSLVQVSVINNKQMIVQFLNDSRPVEQWKREEIVKYIHEWFDLDNDLTPF
YEMAKADPLLKMPARKFYGLRVIGIPDLFEALCWGVLGQQINLAFAYSLKKQFVEAFG
DSIEWNGKKYWVFPPYERIARLTPTDLADIKMTVKKSEYIIGIARLMASGELSREKLM
KMNFKDAEKNLIKIRGIGPWTANYVLMRCLRFPTAFPIDDVGLIHSIKILRNMNRKPT
KDEILEISVPWKEWQSYATFYLWRVLY"
misc_feature complement(203057..203431)
/gene="alkA"
/locus_tag="BSU01800"
/note="8-oxoguanine DNA glycosylase, N-terminal domain;
Region: OGG_N; pfam07934"
/db_xref="CDD:219650"
misc_feature complement(202553..203407)
/gene="alkA"
/locus_tag="BSU01800"
/note="3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and repair];
Region: AlkA; COG0122"
/db_xref="CDD:223200"
misc_feature complement(202559..203068)
/gene="alkA"
/locus_tag="BSU01800"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:238013"
misc_feature complement(order(202871..202873,203018..203020,
203027..203035))
/gene="alkA"
/locus_tag="BSU01800"
/note="minor groove reading motif; other site"
/db_xref="CDD:238013"
misc_feature complement(202742..202765)
/gene="alkA"
/locus_tag="BSU01800"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:238013"
misc_feature complement(order(202562..202564,202574..202576,
202733..202735))
/gene="alkA"
/locus_tag="BSU01800"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238013"
misc_feature complement(202685..202687)
/gene="alkA"
/locus_tag="BSU01800"
/note="active site"
/db_xref="CDD:238013"
gene 203729..204364
/gene="adaA"
/locus_tag="BSU01810"
/db_xref="GeneID:938648"
CDS 203729..204364
/gene="adaA"
/locus_tag="BSU01810"
/EC_number="2.1.1.63"
/function="16.3: Control"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 1744039, 2120677,
7565865, 8376346; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="bifunctional methylphosphotriester-DNA
alkyltransferase/transcriptional regulator"
/protein_id="NP_388062.1"
/db_xref="GI:16077249"
/db_xref="GeneID:938648"
/translation="MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFF
YAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVD
LITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYL
IQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK"
misc_feature 203780..204346
/gene="adaA"
/locus_tag="BSU01810"
/note="Adenosine deaminase [Nucleotide transport and
metabolism]; Region: Ada; COG2169"
/db_xref="CDD:225080"
misc_feature 203804..204001
/gene="adaA"
/locus_tag="BSU01810"
/note="Metal binding domain of Ada; Region:
Ada_Zn_binding; pfam02805"
/db_xref="CDD:145780"
misc_feature 204050..204175
/gene="adaA"
/locus_tag="BSU01810"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature 204209..204325
/gene="adaA"
/locus_tag="BSU01810"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 204351..204890
/gene="adaB"
/locus_tag="BSU01820"
/db_xref="GeneID:938673"
CDS 204351..204890
/gene="adaB"
/locus_tag="BSU01820"
/EC_number="2.1.1.63"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 1744039, 2120677,
7565865, 8376346; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="O6-methylguanine-DNA methyltransferase"
/protein_id="NP_388063.1"
/db_xref="GI:16077250"
/db_xref="GeneID:938673"
/translation="METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEELFE
WARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEI
PYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEM
KTLLLDLEKRASSEMDVPH"
misc_feature 204369..204860
/gene="adaB"
/locus_tag="BSU01820"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:223427"
misc_feature 204369..204608
/gene="adaB"
/locus_tag="BSU01820"
/note="6-O-methylguanine DNA methyltransferase,
ribonuclease-like domain; Region: Methyltransf_1N;
pfam02870"
/db_xref="CDD:217259"
misc_feature 204621..204857
/gene="adaB"
/locus_tag="BSU01820"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature order(204621..204626,204678..204683,204705..204707,
204714..204716,204720..204725,204729..204731,
204738..204743,204747..204749,204771..204773,
204786..204788,204807..204809)
/gene="adaB"
/locus_tag="BSU01820"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature order(204678..204680,204771..204776,204780..204782,
204852..204854)
/gene="adaB"
/locus_tag="BSU01820"
/note="active site"
/db_xref="CDD:119438"
gene 205409..206926
/gene="ndhF"
/locus_tag="BSU01830"
/db_xref="GeneID:938593"
CDS 205409..206926
/gene="ndhF"
/locus_tag="BSU01830"
/EC_number="1.6.5.3"
/function="16.10: Respire"
/inference="ab initio prediction:AMIGene:2.0"
/note="Catalyzes the transfer of electrons from NADH to
ubiquinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit 5"
/protein_id="NP_388064.1"
/db_xref="GI:16077251"
/db_xref="GeneID:938593"
/translation="MLVSLSLSSLLTLFFIMLMASGISGLLFLHPRVPLSFVRIHIGI
LALPLLVSLLILANSGVSGNVGPWHLDSLACLMTFFVLAIGFIIQRFSVRYLMGDRSY
RKYFTLFTFTTGAASMTWLSGDLRLMVLFWGATLVGLTLLIRLNSAWQVASEAAKISG
RLFLLSWFSLFFAMMWLFHATGQWQLSLVVTNESLAGLGEWERTGIQLLIVLAVIIPA
AQWPFQRWLVESIVAPTPVSAIMHAGLVNAGGIILTRFSPLFHGGIASIILLLLASIS
VLIGTGISLVQVDYKRQLVGSTIGQMGFMLIQCALGAYIAAIIHLILHGLFKATLFLQ
AGSAVGRHEVSTRTNERTSYLWVMAGRILSLVIGVAFWLTAPGDGYHLISALILGWSL
SVSWDQLVAFGEGRIGRIAGLTVLGGAALVYFIIHHLFYKWLHTTIFQSVQPPMSAVM
IVVCLLLFGSALGTWVARHRSSVFFAVLYLWLVRLGEAKPKSVESHPDYLKQYIS"
misc_feature 205448..206923
/gene="ndhF"
/locus_tag="BSU01830"
/note="NADH dehydrogenase subunit 5; Validated; Region:
PRK08601"
/db_xref="CDD:236310"
misc_feature 205772..206581
/gene="ndhF"
/locus_tag="BSU01830"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 206941..209556
/gene="ybcC"
/locus_tag="BSU01845"
/db_xref="GeneID:938603"
CDS 206941..209556
/gene="ybcC"
/locus_tag="BSU01845"
/function="18: Unknown function"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388065.2"
/db_xref="GI:255767049"
/db_xref="GeneID:938603"
/translation="MGITSVLTKDNVKKIDTDIDVQERDLNVFITSASRVIAPLWPIS
TFAARNPWMGLENQPFDQVASWLKNTRDVDIYPSASMIRSAKNKGEIDEDFVEMGLQR
WLDSHSYHIPRDVAERFCHAALKLDPLPSDLLSSHELEKLVSECSGLDHIENVFMQPL
SSYIENQDGERLVNILDHHVIKWSKLYLDDSQAGWTMPNREEGFYRAWQHLIQYDPAL
SKKQRERVKGWPKEAHLALQEALFALEIPESEIQTYLEGHLLSLPGWAGMMLWRSQQS
SHEHALLTEYLAVRISMEWALIKPYLPLTNERSKKTISIAPLIAAWIHWGGLTLEEWS
QMTASEQNEYLSFAYSFDEKLRKKLWLEAWEQTYTDRLSQKIISKQRETGREKSALAQ
LAFCIDVRSEPFRRQLEKEGPFETIGIAGFFGVPIATCELGSKHSHASLPIIQKPQNK
IKEFADEDVFKKYNQRKQAIHSLSHTFKTMKQNALSSLLLPELSGPWLTLQMAARSFV
PRKAGRFIRNLREAWLRKPDTKLSLHHDATEAEIPVGFTDEEKVNYARQALKMMGLTE
NIAPLVVICGHGSQSTNNPYSAALDCGACGGAAGGFNARVLAALCNLSEVREALLAEG
IKIPEDTVFAAAEHNTTVDELHWLYVPELSEAAQEAFEQIEAVMPKVRHHVNAERLAQ
LPNFQSKLKNPKAEANRFAEDWSEIRPEWGLARNAAFIIGKRELTQDCDLEGRAFLHN
YDWKQDESGELLANIIVGPGTVAQWINLQYYASTVAPHYYGSGNKATQTVTAGLGVMQ
GNASDLLAGLPWQSVMESDHEAYHSPLRLLILIQAPREYVERLLNHDSAFLQKVQNGW
VRLASLDPEGCWESW"
misc_feature 207016..209553
/gene="ybcC"
/locus_tag="BSU01845"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3002"
/db_xref="CDD:225548"
misc_feature 207028..209511
/gene="ybcC"
/locus_tag="BSU01845"
/note="Uncharacterized protein conserved in bacteria
(DUF2309); Region: DUF2309; pfam10070"
/db_xref="CDD:220550"
gene 209633..210160
/gene="ybcF"
/locus_tag="BSU01860"
/db_xref="GeneID:938524"
CDS 209633..210160
/gene="ybcF"
/locus_tag="BSU01860"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="NP_388067.1"
/db_xref="GI:16077254"
/db_xref="GeneID:938524"
/translation="MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASI
SHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQN
CKPEFLGGTVDEWLNENSSDTIEKSVDMIRHHPLVPSYVKVRGLFVNHKGGKPSIAEV
PDVKTGQAMPDHCLS"
misc_feature 209633..210151
/gene="ybcF"
/locus_tag="BSU01860"
/note="Carbonic anhydrase [Inorganic ion transport and
metabolism]; Region: CynT; COG0288"
/db_xref="CDD:223365"
misc_feature order(209858..209860,209867..209869)
/gene="ybcF"
/locus_tag="BSU01860"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:238224"
gene 210224..210514
/gene="ybcH"
/locus_tag="BSU01870"
/db_xref="GeneID:938573"
CDS 210224..210514
/gene="ybcH"
/locus_tag="BSU01870"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388068.1"
/db_xref="GI:16077255"
/db_xref="GeneID:938573"
/translation="MSANLTDFVTKTIEEMNSFDRENMECIKKLIRKAIDFYHLKSYE
EVEETHSGNVRFLHVHSMMEENMLSKMIVVTRNGKTDLDIEGVYEGYVVREY"
gene 210572..210946
/gene="ybcI"
/locus_tag="BSU01880"
/db_xref="GeneID:938568"
CDS 210572..210946
/gene="ybcI"
/locus_tag="BSU01880"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388069.1"
/db_xref="GI:16077256"
/db_xref="GeneID:938568"
/translation="MKKSKGSIESEISKSITQWEKDYLGRGSVSVKTDILRDMIIVNL
KGILTPAEYVVCGSKEGMLSIKQTRSELVESGIEGLKDIILKITGEKVKSFHTDLSSR
TGERVMVFKLCNDLEKNLEKIL"
misc_feature 210620..210943
/gene="ybcI"
/locus_tag="BSU01880"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5609"
/db_xref="CDD:227896"
gene 211429..211731
/gene="ybzH"
/locus_tag="BSU01889"
/db_xref="GeneID:8302965"
CDS 211429..211731
/gene="ybzH"
/locus_tag="BSU01889"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_003097670.1"
/db_xref="GI:255767050"
/db_xref="GeneID:8302965"
/translation="MEPIEVFKALSNESRLQILQWLKEPDRHFAPHEGIDMNTIGVCV
SQITDKLKMTQSTASQYLTILLRAGLIKAERIGKYTYYKRDEEAIGKLADFLKTEI"
misc_feature 211447..211728
/gene="ybzH"
/locus_tag="BSU01889"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(211447..211452,211456..211458,211465..211467,
211474..211479,211486..211491,211498..211500,
211633..211635,211699..211704,211708..211716,
211720..211728)
/gene="ybzH"
/locus_tag="BSU01889"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature order(211450..211455,211465..211473,211555..211563,
211588..211599,211603..211608,211615..211620,
211624..211629,211645..211653,211666..211674)
/gene="ybzH"
/locus_tag="BSU01889"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature order(211555..211557,211564..211566,211699..211701)
/gene="ybzH"
/locus_tag="BSU01889"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene 211859..213031
/gene="ybcL"
/locus_tag="BSU01890"
/db_xref="GeneID:938536"
CDS 211859..213031
/gene="ybcL"
/locus_tag="BSU01890"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15812018, 15849754, 16850406; Product
type pt: transporter"
/codon_start=1
/transl_table=11
/product="efflux transporter"
/protein_id="NP_388070.1"
/db_xref="GI:16077257"
/db_xref="GeneID:938536"
/translation="MSNTWKIYILAIVSFLVGTSEYIISGILDQIAHTLGITLAAAGQ
LITIFSLVYALSTPVLMALTASMDRRKLMMYALGLFVFGNVLAFVLPGYGWFIAARII
MAMGAGVVVVTALTIAAKIASEGKQGSAIATVVMGFTASLIIGVPLGRMIAVALGWKS
VFGAIALLGLIAMVVIFFTLPYTEGDKPVPLLQQLALFKKRKVAMGLSITFFWLGGYS
VAYTYLSPYLLNISGINGKLLSGVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMTL
HIVTLILLSLVTHSYIGVLVILILWSFAAWSTGPTQQFHLATIEPEMSGVLLSMNQSM
MQFAMAVGAGIGGVFVENVSLASITWVGALGVMIAIIASLLIFNSQPKQALKDINQ"
misc_feature 211859..213010
/gene="ybcL"
/locus_tag="BSU01890"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:225371"
misc_feature 211877..212989
/gene="ybcL"
/locus_tag="BSU01890"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(211919..211921,211928..211936,211940..211945,
211994..211996,212003..212008,212015..212017,
212027..212032,212036..212041,212177..212182,
212189..212194,212201..212206,212213..212215,
212249..212254,212261..212266,212282..212284,
212498..212500,212507..212512,212519..212524,
212531..212533,212573..212575,212585..212587,
212597..212599,212606..212608,212618..212620,
212759..212761,212768..212773,212780..212782,
212792..212797,212804..212806,212837..212842,
212849..212854,212861..212866,212873..212875)
/gene="ybcL"
/locus_tag="BSU01890"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 213155..213469
/gene="ybcM"
/locus_tag="BSU01900"
/db_xref="GeneID:938504"
CDS 213155..213469
/gene="ybcM"
/locus_tag="BSU01900"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388071.1"
/db_xref="GI:16077258"
/db_xref="GeneID:938504"
/translation="MRFLKALPRRAEVQYDCLDRTLETQENVNLNIRVNVKEVATWGV
NTCIISLKGLDNADDRFVLPEVNTALALFPLSIAADCLLMLPCISVVMSISSVMKSVT
VE"
misc_feature <213218..213367
/gene="ybcM"
/locus_tag="BSU01900"
/note="Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains [Cell
envelope biogenesis, outer membrane]; Region: GlmS;
COG0449"
/db_xref="CDD:223526"
gene 213941..214108
/gene="skfA"
/locus_tag="BSU01910"
/db_xref="GeneID:938506"
CDS 213941..214108
/gene="skfA"
/locus_tag="BSU01910"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 16816204,
17069462, 17184776; Product type f: factor"
/codon_start=1
/transl_table=11
/product="sporulation killing factor A"
/protein_id="NP_388072.1"
/db_xref="GI:16077259"
/db_xref="GeneID:938506"
/translation="MKRNQKEWESVSKKGLMKPGGTSIVKAAGCMGCWASKSIAMTRV
CALPHPAMRAI"
gene 214175..215407
/gene="skfB"
/locus_tag="BSU01920"
/db_xref="GeneID:938501"
CDS 214175..215407
/gene="skfB"
/locus_tag="BSU01920"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 16816204,
17069462, 17184776, 18307109; Product type f: factor"
/codon_start=1
/transl_table=11
/product="synthesis of sporulation killing factor A"
/protein_id="NP_388073.2"
/db_xref="GI:50812176"
/db_xref="GeneID:938501"
/translation="MSYDRVKDFDLPELAVHLQPHGAVMIDRKSMFYFRLSGRGAQLA
FLLSKNKNLHKTARIWEIMKKEEMSADQLKEELSAHPFTEAWTEGLLDQPLHVSGSLD
SYLPISCTLQLTNACNLSCSFCYASSGKPYPEELSSEQWILVMQKLAAHGVADITLTG
GEAKLIKGFKELVVVASSLFTNVNVFSNGLNWRDEEVELLSHLGNVSVQISIDGMDNT
HDQLRGRKGGFKESMNTIKKLSEANIPVIVAMTINESNADEVSDVVEQCANAGAFIFR
AGKTLSVGRATEGFKALDIDFEEMVQIQLREARHKWGDRLNIIDWEHEESSFTTDFCT
PGYLAWYIRADGYVTPCQLEDLPLGHILEDSMADIGSPARLLQLKCEAKNCKCIGKIE
LSEPDLPFQKEVKAGIQE"
misc_feature 214505..215095
/gene="skfB"
/locus_tag="BSU01920"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature 214505..214969
/gene="skfB"
/locus_tag="BSU01920"
/note="Radical SAM superfamily; Region: Radical_SAM;
pfam04055"
/db_xref="CDD:217866"
misc_feature order(214523..214525,214529..214531,214535..214537,
214541..214549,214649..214651,214655..214660,
214730..214738,214805..214807,214925..214927,
215021..215026)
/gene="skfB"
/locus_tag="BSU01920"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 215404..216894
/gene="skfC"
/locus_tag="BSU01935"
/db_xref="GeneID:8302931"
CDS 215404..216894
/gene="skfC"
/locus_tag="BSU01935"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 15849754,
16816204, 16850406, 17069462, 17184776; Product type t :
transporter"
/codon_start=1
/transl_table=11
/product="sporulation killing factor biosynthesis and
export"
/protein_id="YP_003097671.1"
/db_xref="GI:255767051"
/db_xref="GeneID:8302931"
/translation="MNSLSLVFWSILAVVGLLLFIKFKPPTIASLLLSKDEAKEISIQ
FIKEFVGIDVENWDFYSVYWYDHDTVNKLHHLGILKKNRKVLYDVGLVESWRVRFVHQ
NQSFVVGVNANREITFFYADVPKKTLSGKFEQVSPETLKQRLMASPDGLWSRANMTGT
GKKEEDFREVSTYWYIAEAGDIRLKVTVELQGGRISYIGTEQEILTDQMSKVIRDEQV
ESTFGVSGMLGSALAMILAILILVFMDVQTSIIFSLVLGLLIIICQSLTLKEDIQLTI
VNAYDARMSVKTVSLLGILSTLLTGLLTGFVVFICSLAGNALAGDFGWKTFEQPIVQI
FYGIGAGLISLGVTSLLFNLLEKKQYLRISPELSNRTVFLSGFTFRQGLNMSIQSSIG
EEVIYRLLMIPVIWWMSGNILISIIVSSFLWAVMHQVTGYDPRWIRWLHLFIFGCFLG
VLFIKFGFICVLVAHFIHNLVLVCMPLWQFKLQKHMHHDQPKHTSL"
misc_feature 216544..216816
/gene="skfC"
/locus_tag="BSU01935"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:217080"
gene 216913..217632
/gene="skfE"
/locus_tag="BSU01950"
/db_xref="GeneID:938498"
CDS 216913..217632
/gene="skfE"
/locus_tag="BSU01950"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="sporulation killing factor biosynthesis and
export; ABC transporter binding protein"
/protein_id="NP_388077.1"
/db_xref="GI:16077264"
/db_xref="GeneID:938498"
/translation="MQLMQVQNLSKCYRNGDGVEHLSFSIQRGEIVALLGPNGAGKTT
TIRCLTGLYKPDKGDILIEGSPPGDINVQKKVALIPDQPYLYPALTAAEHIQFRARGY
HPGKKDVKERVYHALKEVHLEEKANQLCGQLSRGQKQRVVLAGAIVQDALLYILDEPT
VGLDIPSKQWLSNWLKTKTDQGCSAFVSTHSLEFVIETADRVILIRDGKLMQDLYVPQ
FEEQAEWRKEVIRLLGEWSDE"
misc_feature 216913..217551
/gene="skfE"
/locus_tag="BSU01950"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:224047"
misc_feature 216925..217542
/gene="skfE"
/locus_tag="BSU01950"
/note="ATP-binding cassette domain of the drug resistance
transporter and related proteins, subfamily A; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:213197"
misc_feature 217018..217041
/gene="skfE"
/locus_tag="BSU01950"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213197"
misc_feature order(217027..217032,217036..217044,217153..217155,
217381..217386,217480..217482)
/gene="skfE"
/locus_tag="BSU01950"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213197"
misc_feature 217144..217155
/gene="skfE"
/locus_tag="BSU01950"
/note="Q-loop/lid; other site"
/db_xref="CDD:213197"
misc_feature 217309..217338
/gene="skfE"
/locus_tag="BSU01950"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213197"
misc_feature 217369..217386
/gene="skfE"
/locus_tag="BSU01950"
/note="Walker B; other site"
/db_xref="CDD:213197"
misc_feature 217393..217404
/gene="skfE"
/locus_tag="BSU01950"
/note="D-loop; other site"
/db_xref="CDD:213197"
misc_feature 217468..217488
/gene="skfE"
/locus_tag="BSU01950"
/note="H-loop/switch region; other site"
/db_xref="CDD:213197"
gene 217697..219040
/gene="skfF"
/locus_tag="BSU01960"
/db_xref="GeneID:938494"
CDS 217697..219040
/gene="skfF"
/locus_tag="BSU01960"
/function="16.1: Circulate"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 15849754,
16816204, 16850406, 17069462, 17184776; Product type t :
transporter"
/codon_start=1
/transl_table=11
/product="sporulation killing factor biosynthesis and
export; ABC transporter permease"
/protein_id="NP_388078.2"
/db_xref="GI:255767052"
/db_xref="GeneID:938494"
/translation="MPFLIMLLFVGAIGFQVSFVSRSTTWDMSIAGWVLTGVFILYTA
FGLFSNRLPSQMADIIWLYGTATSFSKVVYSVLFFSVTWKALLWIISAIFGDVLIVLL
SGDHINLLGRSIIFVGLFFIAEVWLMSVSCARTVKKMKRVYVLVFLLMLGIYSICLYR
FFFLQHSSGIWESIARFISGVGLVFDTLSPLYVVVFIGIITVSFMTIAFTSRQVEMKE
SLVKEAEFWEEFQERQFGSGQIIQKPKTTWWGLQGLNGIWSFLWLELLLFKKYLFFHS
IHTVMLSGVFYVVIFMYPEWFYLLFFLIVSAVMLSSYYSGIVRHSQSGTLHLFPGALW
KKIIILELTNTVWLYILYCVSITFMAVGNLVYWYIYGLGIYIWFMTIRLFAFTHTNRN
DIKLSLPQYYKSFFMALGLSGICLYVIHLLTADWYTLVVVVCIGSLSWCLFYRFR"
gene 219087..219602
/gene="skfG"
/locus_tag="BSU01970"
/db_xref="GeneID:938502"
CDS 219087..219602
/gene="skfG"
/locus_tag="BSU01970"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 16816204,
17069462, 17184776; Product type ph: phenotype"
/codon_start=1
/transl_table=11
/product="sporulation killing factor biosynthesis and
export"
/protein_id="NP_388079.2"
/db_xref="GI:255767053"
/db_xref="GeneID:938502"
/translation="MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGKDAIPVLVEA
LKEEGSLCNIAAAVLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIGKPSLPF
VIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGK
LIAFQLKDKED"
misc_feature 219198..219443
/gene="skfG"
/locus_tag="BSU01970"
/note="HEAT repeats; Region: HEAT_2; pfam13646"
/db_xref="CDD:222285"
gene 219607..220032
/gene="skfH"
/locus_tag="BSU01980"
/db_xref="GeneID:938499"
CDS 219607..220032
/gene="skfH"
/locus_tag="BSU01980"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 16816204,
17069462, 17184776; Product type ph: phenotype"
/codon_start=1
/transl_table=11
/product="sporulation killing factor"
/protein_id="NP_388080.2"
/db_xref="GI:255767054"
/db_xref="GeneID:938499"
/translation="MKDEQMLTEWPSHLPWLNQSQNDFTFPSDTYLLLYFWSMSCPNC
HQLTDKVLQDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVT
TCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL"
misc_feature 219691..219969
/gene="skfH"
/locus_tag="BSU01980"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature 219697..219987
/gene="skfH"
/locus_tag="BSU01980"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:239264"
misc_feature order(219727..219729,219736..219738)
/gene="skfH"
/locus_tag="BSU01980"
/note="catalytic residues [active]"
/db_xref="CDD:239264"
gene 220279..221256
/gene="ybdG"
/locus_tag="BSU01990"
/db_xref="GeneID:938500"
CDS 220279..221256
/gene="ybdG"
/locus_tag="BSU01990"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_388081.2"
/db_xref="GI:255767055"
/db_xref="GeneID:938500"
/translation="MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGK
GTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVVDRAG
YGYSEVSHDDRDIDTVLEQTRKALMKSGNKPPYILMPHSISGIEAMYWAQKYPKEIKA
IIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDE
EKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKY
AIQNRKDYEAFAAQFNTADIKELRGTHSIYLYQPDQIYKLSMEFMRKVR"
misc_feature 220411..221250
/gene="ybdG"
/locus_tag="BSU01990"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 221258..221929
/gene="ybdJ"
/locus_tag="BSU02000"
/db_xref="GeneID:938485"
CDS 221258..221929
/gene="ybdJ"
/locus_tag="BSU02000"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="two-component response regulator YbdK"
/protein_id="NP_388082.1"
/db_xref="GI:16077269"
/db_xref="GeneID:938485"
/translation="MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVLSVIQ
KVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIGEDYMVKP
FDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYL
YENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLN
TVVKK"
misc_feature 221267..221914
/gene="ybdJ"
/locus_tag="BSU02000"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 221276..221572
/gene="ybdJ"
/locus_tag="BSU02000"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(221285..221290,221411..221413,221435..221437,
221495..221497,221549..221551,221558..221563)
/gene="ybdJ"
/locus_tag="BSU02000"
/note="active site"
/db_xref="CDD:238088"
misc_feature 221411..221413
/gene="ybdJ"
/locus_tag="BSU02000"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(221420..221425,221429..221437)
/gene="ybdJ"
/locus_tag="BSU02000"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 221558..221566
/gene="ybdJ"
/locus_tag="BSU02000"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 221630..221908
/gene="ybdJ"
/locus_tag="BSU02000"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(221705..221707,221762..221767,221816..221818,
221825..221827,221849..221854,221882..221884,
221897..221899)
/gene="ybdJ"
/locus_tag="BSU02000"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 221950..222912
/gene="ybdK"
/locus_tag="BSU02010"
/db_xref="GeneID:938496"
CDS 221950..222912
/gene="ybdK"
/locus_tag="BSU02010"
/function="16.12: Sense"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295; Product type
rc: receptor"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase YbdJ"
/protein_id="NP_388083.1"
/db_xref="GI:16077270"
/db_xref="GeneID:938496"
/translation="MLLFTAVISVPMLLLAVSVLMSVIYDSMFKPMNHGMPFHRSFAY
PAMIVVFLISLLLLAFLFSKSIHSLLHKINLLNQTIRHLASDQRVPDKIEVKRADEIG
ELIKSVNLLIERTTYRELELRQQEEIKKELLQKLRHDINTPLTALRLQLFYLEDQCHG
QAVFESLYQQIEYISELTNEFNLYSAETLESSYIVNEEVRLNELLETAVKKWDYLYSM
SGIELHYKPADQDVIWMSNTLWMERLFDNIFQNTLRHSKAKKMEVTIEHGDVFIRDDG
IGFDRNESSEGLGLKIIEDTCRLLAITYELHTNDNGTGFLFSKE"
misc_feature 222148..222903
/gene="ybdK"
/locus_tag="BSU02010"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature <222148..222291
/gene="ybdK"
/locus_tag="BSU02010"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:216054"
misc_feature order(222154..222159,222166..222171,222175..222180,
222187..222192,222196..222198,222247..222252,
222256..222261,222268..222273,222277..222282,
222289..222291)
/gene="ybdK"
/locus_tag="BSU02010"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 222325..222504
/gene="ybdK"
/locus_tag="BSU02010"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(222343..222345,222355..222357,222367..222369,
222376..222378,222388..222390,222397..222399,
222436..222438,222448..222450,222457..222459,
222469..222471,222478..222480,222490..222492)
/gene="ybdK"
/locus_tag="BSU02010"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 222361..222363
/gene="ybdK"
/locus_tag="BSU02010"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 222670..222903
/gene="ybdK"
/locus_tag="BSU02010"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(222688..222690,222700..222702,222709..222711,
222763..222765,222769..222771,222775..222777,
222781..222786,222808..222819,222865..222867,
222871..222873,222883..222888,222892..222894)
/gene="ybdK"
/locus_tag="BSU02010"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 222700..222702
/gene="ybdK"
/locus_tag="BSU02010"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(222775..222777,222781..222783,222808..222810,
222814..222816)
/gene="ybdK"
/locus_tag="BSU02010"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 222971..223234
/gene="ybzI"
/locus_tag="BSU02019"
/db_xref="GeneID:8303143"
CDS 222971..223234
/gene="ybzI"
/locus_tag="BSU02019"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003097672.1"
/db_xref="GI:255767056"
/db_xref="GeneID:8303143"
/translation="MNIICLKKSSKRLSTSQAVLVTDIADTGITAAAGADIIAATAAV
RAKEDTTTVMAAVIVTNAGATAAVNPKKVLVPLLGQGFFYVTD"
gene complement(223219..223989)
/gene="ybdM"
/locus_tag="BSU02030"
/db_xref="GeneID:938464"
CDS complement(223219..223989)
/gene="ybdM"
/locus_tag="BSU02030"
/EC_number="2.7.11.-"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="protein kinase"
/protein_id="NP_388085.1"
/db_xref="GI:16077272"
/db_xref="GeneID:938464"
/translation="MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTD
ILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVM
QFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDG
RLCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEEL
TLTKEVTLLLKRLLGIEEEYQHTASIREDLNRAIQSVT"
misc_feature complement(<223468..223920)
/gene="ybdM"
/locus_tag="BSU02030"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:245201"
misc_feature complement(order(223483..223485,223492..223494,
223522..223524,223528..223533,223537..223539,
223543..223545,223657..223659,223663..223665,
223675..223686,223732..223734,223828..223830,
223834..223836,223873..223875,223885..223899))
/gene="ybdM"
/locus_tag="BSU02030"
/note="active site"
/db_xref="CDD:173623"
misc_feature complement(order(223492..223494,223522..223524,
223528..223533,223537..223539,223543..223545,
223663..223665,223675..223686,223732..223734,
223828..223830,223834..223836,223873..223875,
223885..223899))
/gene="ybdM"
/locus_tag="BSU02030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature complement(order(223483..223485,223531..223533,
223537..223539,223543..223545,223657..223659,
223663..223665,223885..223887))
/gene="ybdM"
/locus_tag="BSU02030"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature complement(223477..223497)
/gene="ybdM"
/locus_tag="BSU02030"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene complement(224075..224932)
/gene="ybdN"
/locus_tag="BSU02040"
/db_xref="GeneID:938489"
CDS complement(224075..224932)
/gene="ybdN"
/locus_tag="BSU02040"
/function="16.5: Explore"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16794953; Product type h :
extrachromosomal origin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388086.1"
/db_xref="GI:16077273"
/db_xref="GeneID:938489"
/translation="MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIG
YWKYKNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDKNRIPVSQ
GTEVINPNTFSSFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQ
FSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHL
IMTSENNEWSRALVNSSTSGSYDISLSDQLSVAKVWSFKYNTLATARSTMSNVKAKID
YEYDVTKQF"
gene 225064..226248
/gene="ybdO"
/locus_tag="BSU02050"
/db_xref="GeneID:938493"
CDS 225064..226248
/gene="ybdO"
/locus_tag="BSU02050"
/function="16.5: Explore"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15033535; Product type h :
extrachromosomal origin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388087.1"
/db_xref="GI:16077274"
/db_xref="GeneID:938493"
/translation="MRLNRQFIRTQLIAQNILSKNAPAKRENATENPAAVLEKAYSRL
KSQSSTGGINQFNYSKTSVSGNSGTFSKVYQSANDRTVTDTGEETVIQSQNPYESESD
IRIKILDEKYSRMNAINKTKSDPLGYIKDKYQNSKSPYFRSDLSAAERQAAYDNETEW
LFKGKAQNYNLQDAVFRNVTFHGEVEAENEKVYQRGQVNQQLQVLLNRNHIHIPEGTE
LTFTITPIDYQVRVSGTDDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEA
YKKYQAAREMYEVTGYHLKDLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAI
SYYRSELSKIAEAGYNAIPDFILSIDYSNGSLRDVGQSKSYGTGDTGWLEALKRQTGV
NY"
gene 226566..227954
/gene="ybxG"
/locus_tag="BSU02060"
/db_xref="GeneID:938470"
CDS 226566..227954
/gene="ybxG"
/locus_tag="BSU02060"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="amino acid permease"
/protein_id="NP_388088.1"
/db_xref="GI:16077275"
/db_xref="GeneID:938470"
/translation="MANKELKRGLGARHIQMIALGGTIGVGLFMGSASTISWTGPSVL
LAYAICGIFIFFIMRAMGEMLYVEPSTGSFATFGHQYIHPMAGYITAWSNWFQWIIVG
MSEIIAVGSYTKYWFPDLPAWIPGIVAMVILGAANLISVKSFGEFEFWFAMIKIVTII
LMIIAGIGIIFFGFGNGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIG
ITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVIVTVYPWDELNSLGSPFVSTFSKI
GITAAAGIINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKISRNGVPLYGT
IAVLIGLAVGVVLNYIAPPKIFVYVYSASVLPGMIPWFIILISHIGFRKAKGAALDKH
PFKMPFAPFTNYLTIAFLLMVLVGMWFNDDTRISLIVGVIFLALVVISYYVFGIGKRT
QANLTKSEQAAE"
misc_feature 226566..227933
/gene="ybxG"
/locus_tag="BSU02060"
/note="putative transport protein YifK; Provisional;
Region: PRK10746"
/db_xref="CDD:182694"
gene 228066..228314
/gene="csgA"
/locus_tag="BSU02070"
/db_xref="GeneID:938448"
CDS 228066..228314
/gene="csgA"
/locus_tag="BSU02070"
/function="16.5: Explore"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 9016963; Product type cp:
cell process"
/codon_start=1
/transl_table=11
/product="sporulation-specific SASP protein"
/protein_id="NP_388089.1"
/db_xref="GI:16077276"
/db_xref="GeneID:938448"
/translation="MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLD
DNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL"
gene 228331..228522
/gene="ybxH"
/locus_tag="BSU02080"
/db_xref="GeneID:938445"
CDS 228331..228522
/gene="ybxH"
/locus_tag="BSU02080"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388090.1"
/db_xref="GI:16077277"
/db_xref="GeneID:938445"
/translation="MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEY
PDHDLIEELVNHYCFEHEI"
gene complement(228549..229352)
/gene="ybxI"
/locus_tag="BSU02090"
/db_xref="GeneID:938466"
CDS complement(228549..229352)
/gene="ybxI"
/locus_tag="BSU02090"
/EC_number="3.5.2.6"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 14742199; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="beta-lactamase"
/protein_id="NP_388091.1"
/db_xref="GI:16077278"
/db_xref="GeneID:938466"
/translation="MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFK
DTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKVVNALIGLQVKAVRDEYDVKRWD
GVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTR
LTDMGLGWFVGFIKTEHGSYVFVTNVDDSGTKAKNITVDILKKYGLITS"
misc_feature complement(228552..229298)
/gene="ybxI"
/locus_tag="BSU02090"
/note="Beta-lactamase class D [Defense mechanisms];
Region: COG2602"
/db_xref="CDD:225322"
gene 229525..230778
/gene="cypC"
/locus_tag="BSU02100"
/db_xref="GeneID:938449"
CDS 229525..230778
/gene="cypC"
/locus_tag="BSU02100"
/EC_number="1.14.-.-"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10529095; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="fatty acid beta-hydroxylating cytochrome P450"
/protein_id="NP_388092.1"
/db_xref="GI:16077279"
/db_xref="GeneID:938449"
/translation="MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGK
NFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLSL
MTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVK
ERADDFIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMA
FHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPKYKEWLRSGNSRER
EMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEF
RPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQS
LHYSLARMPSLPESGFVMSGIRRKS"
misc_feature 229534..230775
/gene="cypC"
/locus_tag="BSU02100"
/note="Cytochrome P450 [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: CypX;
COG2124"
/db_xref="CDD:225035"
misc_feature <230059..230628
/gene="cypC"
/locus_tag="BSU02100"
/note="Cytochrome P450; Region: p450; cl12078"
/db_xref="CDD:245864"
gene complement(230819..231079)
/gene="ybyB"
/locus_tag="BSU02110"
/db_xref="GeneID:938450"
CDS complement(230819..231079)
/gene="ybyB"
/locus_tag="BSU02110"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388093.1"
/db_xref="GI:16077280"
/db_xref="GeneID:938450"
/translation="MKQKLLLSGLAVSTVGITSYLLKDPSNRQKAREFIHSMKMKITK
QPDMETFPVDKAGHPDPQDIEDNKMVSEGSMYPVQYYDEKKK"
gene 231348..232967
/gene="ybeC"
/locus_tag="BSU02120"
/db_xref="GeneID:938442"
CDS 231348..232967
/gene="ybeC"
/locus_tag="BSU02120"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="H+/amino acid transporter"
/protein_id="NP_388094.2"
/db_xref="GI:255767057"
/db_xref="GeneID:938442"
/translation="MNQLHRRMGTFSLMMVGLGSMIGSGWLFGAWRAAQIAGPAAIIS
WVIGMVVILFIALSYSELGSMFPEAGGMVKYTQYSHGSFIGFIAGWANWIAIVSVIPV
EAVASVQYMSSWPWEWAKWTSGLVKNGTLTGEGLAFASVLLLIYFLLNYWTVNLFSKA
NSLITIFKIIIPGLTIGALLFVGFHGENFTGGQSIAPNGWASVLTAVATSGIVFAFNG
FQSPINMAGEAKNPGKSIPIAVVGSLFVATVIYVLLQIAFIGAVNPSDIAHGWSHLNF
NSPFADLAIALNINWLVIVLYADAFVSPSGTGITYTATTSRMIYGMEKNKYMPSIFGK
LHPIYGVPRQAMFFNLIVSFIFLFLFRGWGVLAEIISVATLISYITGPITVMTLRRTG
KDLYRPLRLKGLNVIAPLGFIFASLVLYWARWPLTGQVLFIILIGLPIYFYYQAKAKW
KGFGRNFKAGVWMVFYLLAMMVISYLGSDKFGGLNVIHYGWDMVLIAMVSLVFYVWAL
KSGYQTEYLKDAKEINSQLLNGQSEAAAGKE"
misc_feature 231348..232679
/gene="ybeC"
/locus_tag="BSU02120"
/note="Amino acid transporters [Amino acid transport and
metabolism]; Region: PotE; COG0531"
/db_xref="CDD:223605"
gene complement(233014..233895)
/gene="glpQ"
/locus_tag="BSU02130"
/db_xref="GeneID:938446"
CDS complement(233014..233895)
/gene="glpQ"
/locus_tag="BSU02130"
/EC_number="3.1.4.46"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10913081; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="glycerophosphoryl diester phosphodiesterase"
/protein_id="NP_388095.1"
/db_xref="GI:16077282"
/db_xref="GeneID:938446"
/translation="MRKNRILALFVLSLGLLSFMVTPVSAASKGNLLSPDRILTVAHR
GASGYVPEHTILSYETAQKMKADFIELDLQMTKDGKLIVMHDEKLDRTTNGMGWVKDH
TLADIKKLDAGSWFNEAYPEKAKPQYVGLKVPTLEEVLDRFGKHANYYIETKSPDTYP
GMEEKLIASLQKHKLLGKHSKPGQVIIQSFSKESLVKVHQLQPNLPTVQLLEAKQMAS
MTDAALEEIKTYAVGAGPDYKALNQENVRMIRSHGLLLHPYTVNNEADMHRLLDWGVT
GVFTNYPDLFHKVKKGY"
misc_feature complement(233023..233784)
/gene="glpQ"
/locus_tag="BSU02130"
/note="Glycerophosphodiester phosphodiesterase domain of
Staphylococcus aureus and similar proteins; Region:
GDPD_SaGlpQ_like; cd08601"
/db_xref="CDD:176543"
misc_feature complement(233041..233769)
/gene="glpQ"
/locus_tag="BSU02130"
/note="Glycerophosphoryl diester phosphodiesterase family;
Region: GDPD; pfam03009"
/db_xref="CDD:217317"
misc_feature complement(order(233119..233121,233332..233334,
233440..233442,233641..233643,233680..233682,
233686..233688,233767..233769))
/gene="glpQ"
/locus_tag="BSU02130"
/note="active site"
/db_xref="CDD:176543"
misc_feature complement(order(233641..233643,233767..233769))
/gene="glpQ"
/locus_tag="BSU02130"
/note="catalytic site [active]"
/db_xref="CDD:176543"
misc_feature complement(order(233440..233442,233680..233682,
233686..233688))
/gene="glpQ"
/locus_tag="BSU02130"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:176543"
gene complement(233994..235328)
/gene="glpT"
/locus_tag="BSU02140"
/db_xref="GeneID:938447"
CDS complement(233994..235328)
/gene="glpT"
/locus_tag="BSU02140"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11929549, 15849754,
16850406, 8012593; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate permease"
/protein_id="NP_388096.1"
/db_xref="GI:16077283"
/db_xref="GeneID:938447"
/translation="MLNIFKPAPHIERLDDSKMDAAYKRLRLQVFIGIFIGYAGYYLL
RKNFAFAIPYLQEQGFSKTELGLVLAAVSIAYGFSKFIMGMVSDRCNPRYFLATGLFL
SAIVNILFVSMPWVTSSVTIMFIFMFINGWFQGMGWPPCGRTMAHWFSISERGTKMSI
WNVAHNIGGGILAPLVTLGIAMFVTWKSVFFFPAIIAIIISFLIVLLVRDTPQSCGLP
PIEEYRNDYPKHAFKNQEKELTTKEILFQYVLNNKFLWYIAFANVFVYFVRYGVVDWA
PTYLTEAKGFSPEDSRWSYFLYEYAGIPGTILCGWISDRFFKSRRAPAGVLFMAGVFI
AVLVYWLNPAGNPLVDNIALISIGFLIYGPVMLIGLQAIDLAPKKAAGTAAGLTGFFG
YIGGSAFANAIMGFVVDRFNWNGGFIMLISSCILAIVFLALTWNTGKRAEHV"
misc_feature complement(234009..235322)
/gene="glpT"
/locus_tag="BSU02140"
/note="glycerol-3-phosphate transporter; Region: glpT;
TIGR00712"
/db_xref="CDD:129795"
misc_feature complement(<234768..235238)
/gene="glpT"
/locus_tag="BSU02140"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(234819..234821,234840..234845,
234852..234857,234891..234893,234900..234905,
234912..234917,234924..234929,235077..235082,
235086..235091,235101..235103,235110..235115,
235122..235124,235170..235175,235179..235187,
235194..235196))
/gene="glpT"
/locus_tag="BSU02140"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(234024..>234572)
/gene="glpT"
/locus_tag="BSU02140"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 235625..235873
/gene="ybeF"
/locus_tag="BSU02150"
/db_xref="GeneID:938444"
CDS 235625..235873
/gene="ybeF"
/locus_tag="BSU02150"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388097.1"
/db_xref="GI:16077284"
/db_xref="GeneID:938444"
/translation="MDELDIAFFILPLGIMLLSIVGTCICKNPYLMPMLSLVISLVLT
FTIFNQSFLGWAVVYSLVSLALSYITLIVVRKRKESGN"
misc_feature 235625..235861
/gene="ybeF"
/locus_tag="BSU02150"
/note="Protein of unknown function (DUF2651); Region:
DUF2651; pfam10852"
/db_xref="CDD:220889"
gene 235965..236882
/gene="ybfA"
/locus_tag="BSU02160"
/db_xref="GeneID:938439"
CDS 235965..236882
/gene="ybfA"
/locus_tag="BSU02160"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388098.1"
/db_xref="GI:16077285"
/db_xref="GeneID:938439"
/translation="MKTRESSVGLKFRKFNRFYTNVLGFLNEHIYDSPFSLTETRILF
EIYNTPNCTAKALQDKLGLDRGYVSRIVKQFEKEDLIYKQRSKDDARHHYIFVTETGK
TIYKKLEEKANEQVELMLKVINQKEQHKLAEAMAEIEAILSQSLSARASEISIRDYFL
SEDLQLLIEKQRQFYAEAHGWDDTFLAYLQETFDADIEKIWIAESGGKFAGSVGLVKH
DEKTVQLRWFLVDADFRGRGLGTQLLEHLVAYCQDMKFDRIFLWTVSTMAEARPLYKK
FGFRISEVKQEAPLWGQQLTEERWDLELS"
misc_feature 236061..236348
/gene="ybfA"
/locus_tag="BSU02160"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 236067..236243
/gene="ybfA"
/locus_tag="BSU02160"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
misc_feature 236400..236819
/gene="ybfA"
/locus_tag="BSU02160"
/note="Histone acetyltransferase HPA2 and related
acetyltransferases [Transcription / General function
prediction only]; Region: WecD; COG0454"
/db_xref="CDD:223530"
misc_feature 236562..236750
/gene="ybfA"
/locus_tag="BSU02160"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(236646..236654,236682..236687)
/gene="ybfA"
/locus_tag="BSU02160"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 236879..238129
/gene="ybfB"
/locus_tag="BSU02170"
/db_xref="GeneID:938436"
CDS 236879..238129
/gene="ybfB"
/locus_tag="BSU02170"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="carboxylate transporter"
/protein_id="NP_388099.1"
/db_xref="GI:16077286"
/db_xref="GeneID:938436"
/translation="MKRLHYAWIIVSVTFLILLAVQGVRLSFGAFVEPWERQFSIDRS
TISLISTVSFIVYGISQPVIGRLVDKWGARAVLAWSALLTGVSIFLTYLVTSPWQLFL
LYGLGVSLGVGGASNVAASVLVVNWFSKKRGLAFGIMEAGFGAGQMLLVPGSLMLIHW
FSWKLTVVVLGLLLIVIVFPAALLMLRNNPSEKNTEPIGGLAASEKETAPKTTALSVA
GMFRMRQFWFLIFPFLICGFTTVGLMDTHLIPFSHDHGFSTTVTSAAVSLLAGFNIAG
ILLSGIVADRWSSRKILCILYAVRALSIVILIYSHEPYLLLAFAILFGLVDFATVAPT
QMLATQYFQNYSIGLMIGWLSLAHQIGSALGAYVPGVIYTVTGEYTLAFYLSIGMLVL
ASVMNVMLREPAAVTRDSAAVVDK"
misc_feature 236909..238066
/gene="ybfB"
/locus_tag="BSU02170"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 236915..237976
/gene="ybfB"
/locus_tag="BSU02170"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
misc_feature order(236951..236953,236960..236968,236972..236977,
237026..237028,237035..237040,237047..237049,
237059..237064,237068..237073,237209..237214,
237221..237226,237233..237238,237245..237247,
237284..237289,237296..237301,237317..237319,
237587..237589,237596..237601,237608..237613,
237620..237622,237662..237664,237674..237676,
237686..237688,237695..237697,237707..237709,
237848..237850,237857..237862,237869..237871,
237881..237886,237893..237895,237926..237931,
237938..237943,237950..237955,237962..237964)
/gene="ybfB"
/locus_tag="BSU02170"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(238164..238448)
/gene="ybfE"
/locus_tag="BSU02180"
/db_xref="GeneID:938443"
CDS complement(238164..238448)
/gene="ybfE"
/locus_tag="BSU02180"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388100.2"
/db_xref="GI:255767058"
/db_xref="GeneID:938443"
/translation="MNHCLHSNTLAKIVCTVTLITLYFYFFSTRFNELIELAVQMFFA
LIGLFWVFIVSPFSRKVQISERFKQKSENARIVGMIDFVLEQKYKKSISE"
gene complement(238644..239555)
/gene="ybfF"
/locus_tag="BSU02190"
/db_xref="GeneID:938441"
CDS complement(238644..239555)
/gene="ybfF"
/locus_tag="BSU02190"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388101.1"
/db_xref="GI:16077288"
/db_xref="GeneID:938441"
/translation="MKNDQIVFEKTKNIAHDINQMQNQQEIIDYLFRQDSLTLNQLKH
YYSEPSLPLQFLVKVAVLCMFISMTLASFLFIQAKEVFTNTILSDISPAVFSIFTVIC
IFMTYTKIIKKGNKNKGKASLNQRSEFYEKNKLINTILYKKYKMDQQNIQANKHTASD
NEDSMNFSAVLNHVLTISKNDKELLGYLDTRDNAMLSQLKAYFSTRPFSLPHYMSLMF
CGSIIVVYATSLFSGQINYIDIPHIFIFLLLIIFLKILIDLIKLLNISRKGQLHTVLH
FAQRAEYLRMRGVIDFILTERYNKKIM"
gene complement(239644..241842)
/gene="ybfG"
/locus_tag="BSU02200"
/db_xref="GeneID:938433"
CDS complement(239644..241842)
/gene="ybfG"
/locus_tag="BSU02200"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="pepdidoglycan binding protein"
/protein_id="NP_388102.1"
/db_xref="GI:16077289"
/db_xref="GeneID:938433"
/translation="MVDEMVLITQQWLNDTYSGKHGYNPVEESGKTGWDTIYGLTRAL
QIELGISEPADNFGPTTQRLFKPLKRQAPDSKPSNMNFILQGALWCKGFNPGGFTGVF
YEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFKLVSGGDSRIRQIQQNLNRD
YNDYIGLMPCDGLYGRDTNKALIYALQKEEGMSTSVANGFFGNGTTSLCPTLTPGDSR
TGFVLIVQYALYCNGKSFDPGEFDGKYGVGVVSAVKAFQEFMCLPQTGYADMPTIKAL
LSSSGDTTRTASACDTATIITAEKAQTLRNNGYKTVGRYLTGNVRTSSGLTSKALTSK
ELAVILDAGLKVFPIYQDGGYESSYFVKDQGTRDAYSAASAARRLGFPSGTTIYFAVD
FDAYDYEVTDKIIPYFQEIKSAFTKMQTFSTAPKYEIGVYGPRNICIRTSEAGLTKYS
FVANMSTGFSGNLGYPMPNNWAFDQFYEGTIGSGSGSIGIDKDGYSGRDSGASNVNPP
SDPVYDARLRTLTDILSTIPALENLTSLANAMFEFDTTETIFTSPELDIILSTSLLAT
IPSEGSPNTITITNGKPGAYITGLLGDTQTSLTASQIDSYQNLLNSLSLSVRNGYLEV
YVNPTAESLNIQIKIYTPDIPVGDNVTTGLTTTITFKIKTYKGVPVTSPESELALDWP
SYDQYLFPVVGVAALLLIGNMGSDLTNNKGVKVATALSAMLLAIFAYYTS"
misc_feature complement(241465..>241827)
/gene="ybfG"
/locus_tag="BSU02200"
/note="Putative peptidoglycan-binding domain-containing
protein [Cell envelope biogenesis, outer membrane];
Region: COG3409"
/db_xref="CDD:225943"
misc_feature complement(241441..241593)
/gene="ybfG"
/locus_tag="BSU02200"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:216518"
misc_feature complement(241009..241581)
/gene="ybfG"
/locus_tag="BSU02200"
/note="Putative peptidoglycan-binding domain-containing
protein [Cell envelope biogenesis, outer membrane];
Region: COG3409"
/db_xref="CDD:225943"
misc_feature complement(241015..241179)
/gene="ybfG"
/locus_tag="BSU02200"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:216518"
misc_feature complement(240409..241017)
/gene="ybfG"
/locus_tag="BSU02200"
/note="BacA is a bacterial lysin from Enterococcus
faecalis that degrades bacterial cell walls by catalyzing
the hydrolysis of 1,4-beta-linkages between
N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
BacA is homologous to the YbfG and YkuG lysins of...;
Region: GH25_BacA-like; cd06418"
/db_xref="CDD:119380"
misc_feature complement(order(240427..240429,240490..240492,
240547..240549,240667..240669,240673..240675,
240790..240792,240796..240798,240898..240900,
240970..240972))
/gene="ybfG"
/locus_tag="BSU02200"
/note="active site"
/db_xref="CDD:119380"
gene complement(241917..242837)
/gene="ybfH"
/locus_tag="BSU02210"
/db_xref="GeneID:938440"
CDS complement(241917..242837)
/gene="ybfH"
/locus_tag="BSU02210"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="NP_388103.1"
/db_xref="GI:16077290"
/db_xref="GeneID:938440"
/translation="MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRF
LMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVS
IIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNI
LNMLFLGIGASALCFATWNYSVGVLGAVKSSAYIYMVPVITIAASVLILHENMTWIAL
LGGALTLLGLYISELKPKAKLLENGCKMDA"
misc_feature complement(242016..242816)
/gene="ybfH"
/locus_tag="BSU02210"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature complement(242415..242786)
/gene="ybfH"
/locus_tag="BSU02210"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
misc_feature complement(242016..242354)
/gene="ybfH"
/locus_tag="BSU02210"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene complement(242834..243661)
/gene="ybfI"
/locus_tag="BSU02220"
/db_xref="GeneID:938437"
CDS complement(242834..243661)
/gene="ybfI"
/locus_tag="BSU02220"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="NP_388104.1"
/db_xref="GI:16077291"
/db_xref="GeneID:938437"
/translation="MQNETRTLQLDPHLHIEAYRFKGIMQKFPNHFHDYYVIGFIEKG
QRYLACQDQEYIINPGDLLLFNPRDTHSCEQIDGRTLDYRCINVMPDIMEKAVKEITG
SGHLPYFSQHVLFRHELTASLQELHILISEEKQALRKEELFLHLLEELIRHYSDVTFL
SSVPEPSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLLRSFTKQKGITPNSYME
TIRINQAKKLLEQGVRPIDAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKIFEKELHR"
misc_feature complement(243254..243625)
/gene="ybfI"
/locus_tag="BSU02220"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature complement(243011..243133)
/gene="ybfI"
/locus_tag="BSU02220"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature complement(242864..243112)
/gene="ybfI"
/locus_tag="BSU02220"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(242861..>242953)
/gene="ybfI"
/locus_tag="BSU02220"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 243892..245046
/gene="purT"
/locus_tag="BSU02230"
/db_xref="GeneID:938438"
CDS 243892..245046
/gene="purT"
/locus_tag="BSU02230"
/EC_number="2.1.2.-"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="non-folate utilizing enzyme, catalyzes the
production of beta-formyl glycinamide ribonucleotide from
formate, ATP, and beta-GAR and a side reaction producing
acetyl phosphate and ADP from acetate and ATP; involved in
de novo purine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosylglycinamide formyltransferase 2"
/protein_id="NP_388105.1"
/db_xref="GI:16077292"
/db_xref="GeneID:938438"
/translation="MYQSKKVLLLGSGELGKEVVIEAQRLGVQTVAVDSYEHAPAMQV
AHNSYVVDMLDPEQIRTIIEKENPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKL
TMDREGIRRLAAETLGLATAGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSVC
RSEADLESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHVQK
DGDYIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFLAKDRVYFSEVSPRP
HDTGLVTLVTQNLSEFALHVRAILGFPITEITQLSPGASRPLKAPEELADYTVEGLEN
ALAVPKTQVRVFGKPITKAGRRMAVALSAADSVETARENAKKALDQLILK"
misc_feature 243898..245043
/gene="purT"
/locus_tag="BSU02230"
/note="phosphoribosylglycinamide formyltransferase 2;
Validated; Region: purT; PRK09288"
/db_xref="CDD:236454"
misc_feature 243904..>244110
/gene="purT"
/locus_tag="BSU02230"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 244261..244752
/gene="purT"
/locus_tag="BSU02230"
/note="ATP-grasp domain; Region: ATP-grasp; pfam02222"
/db_xref="CDD:216935"
gene 245190..246131
/gene="mpr"
/locus_tag="BSU02240"
/db_xref="GeneID:938430"
CDS 245190..246131
/gene="mpr"
/locus_tag="BSU02240"
/EC_number="3.4.21.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15205417, 15375126;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="extracellular metalloprotease"
/protein_id="NP_388106.1"
/db_xref="GI:16077293"
/db_xref="GeneID:938430"
/translation="MKLVPRFRKQWFAYLTVLCLALAAAVSFGVPAKAAENPQTSVSN
TGKEADATKNQTSKADQVSAPYEGTGKTSKSLYGGQTELEKNIQTLQPSSIIGTDERT
RISSTTSFPYRATVQLSIKYPNTSSTYGCTGFLVNPNTVVTAGHCVYSQDHGWASTIT
AAPGRNGSSYPYGTYSGTMFYSVKGWTESKDTNYDYGAIKLNGSPGNTVGWYGYRTTN
SSSPVGLSSSVTGFPCDKTFGTMWSDTKPIRSAETYKLTYTTDTYGCQSGSPVYRNYS
DTGQTAIAIHTNGGSSYNLGTRVTNDVFNNIQYWANQ"
misc_feature 245478..246125
/gene="mpr"
/locus_tag="BSU02240"
/note="V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism]; Region: COG3591"
/db_xref="CDD:226119"
gene 246094..246492
/gene="ybfJ"
/locus_tag="BSU02250"
/db_xref="GeneID:938435"
CDS 246094..246492
/gene="ybfJ"
/locus_tag="BSU02250"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type lp: lipoprotein"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="NP_388107.1"
/db_xref="GI:16077294"
/db_xref="GeneID:938435"
/translation="MYSTIFNIGQINKYSKLAIFMSILFLCGCSSQTHSSQKETTIPV
TLHVEDAKGLPVEGVQVTIVKAPSSDEEPSTEIGEILGKTDKNGDIKWDTGRKGDYSV
ALTKGETSVTHHISLTEDKKDHAIPLVFKE"
misc_feature 246094..246486
/gene="ybfJ"
/locus_tag="BSU02250"
/note="Protein of unknown function (DUF2606); Region:
DUF2606; pfam10794"
/db_xref="CDD:119314"
gene 246658..247548
/gene="ybfK"
/locus_tag="BSU02260"
/db_xref="GeneID:938434"
CDS 246658..247548
/gene="ybfK"
/locus_tag="BSU02260"
/EC_number="3.1.1.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11389736; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="carboxylesterase NP"
/protein_id="NP_388108.1"
/db_xref="GI:16077295"
/db_xref="GeneID:938434"
/translation="MIQDSMQFAAVESGLRFYQAYDQSLSLWPIESEAFYVSTRFGKT
HIIASGPKDAPSLILLHGGLFSSAMWYPNIAAWSSQFRTYAVDIIGDKNKSIPSAAME
TRADFAEWMKDVFDSLGLETAHLAGLSLGGSHIVNFLLRAPERVERAVVISPAEAFIS
FHPDVYKYAAELTGARGAESYIKWITGDSYDLHPLLQRQIVAGVEWQDEQRSLKPTEN
GFPYVFTDQELKSIQVPVLLMFGEHEAMYHQQMAFERASVLVPGIQAEIVKNAGHLLS
LEQPEYVNQRVLSFLCGGIK"
misc_feature 246814..247530
/gene="ybfK"
/locus_tag="BSU02260"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 247744..248277
/gene="pssA"
/locus_tag="BSU02270"
/db_xref="GeneID:938427"
CDS 247744..248277
/gene="pssA"
/locus_tag="BSU02270"
/EC_number="2.7.8.8"
/function="16.13: Shape"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12682299, 14762009,
15743965, 15849754, 16850406; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="phosphatidylserine synthase"
/protein_id="NP_388109.1"
/db_xref="GI:16077296"
/db_xref="GeneID:938427"
/translation="MNYIPCMITIGNFICGLLAIHSLLYHNIHSAVLFIFTGMFLDFF
DGMAARKLNAVSDMGRELDSFADLVTFGVAPSMLAYSVALYTLPFIGILCALTYSICG
MLRLSKFNIEQSKLPTFIGMPIPFAGMCLVILSFTYNPILLAIGTCGLSYLMVSKIKF
PHFKKHAAENLESGRWN"
misc_feature 247750..248031
/gene="pssA"
/locus_tag="BSU02270"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; pfam01066"
/db_xref="CDD:216278"
misc_feature 247768..248226
/gene="pssA"
/locus_tag="BSU02270"
/note="CDP-diacylglycerol--serine
O-phosphatidyltransferase; Region: pssA; TIGR00473"
/db_xref="CDD:232991"
gene 248268..248756
/gene="ybfM"
/locus_tag="BSU02280"
/db_xref="GeneID:938432"
CDS 248268..248756
/gene="ybfM"
/locus_tag="BSU02280"
/function="16.8: Protect"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12682299, 14762009, 15849754,
16850406; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="membrane phosphatase"
/protein_id="NP_388110.1"
/db_xref="GI:16077297"
/db_xref="GeneID:938432"
/translation="MELVQQLIADYGYLAIFLMLVLGIVGLPIPDEVMMTVVGYFTHT
DVLNYELSILISFVGALLGMLISYMIGRKAGRPFIDKYGKWVGLKEKRMMKVEKWMKK
YGPYSLILGYFIPGVRHVTCYFSGIGKMDLKTYVAFAAIGAFLWCFVFITIGRVIGII
HV"
misc_feature 248286..>248741
/gene="ybfM"
/locus_tag="BSU02280"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:223659"
misc_feature 248352..248732
/gene="ybfM"
/locus_tag="BSU02280"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:220186"
gene 248749..249540
/gene="psd"
/locus_tag="BSU02290"
/db_xref="GeneID:938431"
CDS 248749..249540
/gene="psd"
/locus_tag="BSU02290"
/EC_number="4.1.1.65"
/function="16.13: Shape"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the decarboxylation of
phosphatidyl-L-serine to phosphatidylethanoleamine"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="NP_388111.1"
/db_xref="GI:16077298"
/db_xref="GeneID:938431"
/translation="MFNTAVKILYRSLIELTNHRLSSYLIKGFCESKISKPVIPLFSK
HFRLNWDDVDGTAADYGSLSELFIRQINLERRPVSKEAHAVVSPVDGVVQTVGIINPN
QTFTVKGKDYSFAELTGCKSADHQYNGGYFVVLYLSPRHYHRFHSPISCRYQKLAELG
NRSYPVNQLGLKYGKDVLSKNYRFVYELNSGSRNVLMIPVGAMNINSIVQTNTRTELE
IGEELGYFSFGSTVILVFEKDAFQPSAHLAEGQEVQVGELIGYEE"
misc_feature 248761..249537
/gene="psd"
/locus_tag="BSU02290"
/note="phosphatidylserine decarboxylase; Provisional;
Region: PRK03140"
/db_xref="CDD:179544"
gene 249595..249873
/gene="ybfN"
/locus_tag="BSU02300"
/db_xref="GeneID:938429"
CDS 249595..249873
/gene="ybfN"
/locus_tag="BSU02300"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388112.1"
/db_xref="GI:16077299"
/db_xref="GeneID:938429"
/translation="MEKQIISWITDYQNTGDEAVLRQVREVCWPIVEAVLQEKVMDDE
QANNLREKGIERFPFIISKYQADVQLPVETFLQNTYRFYFHQVMRESS"
gene 249979..251319
/gene="ybfO"
/locus_tag="BSU02310"
/db_xref="GeneID:938424"
CDS 249979..251319
/gene="ybfO"
/locus_tag="BSU02310"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_388113.1"
/db_xref="GI:16077300"
/db_xref="GeneID:938424"
/translation="MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQ
PLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLA
FESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTG
FDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVK
NYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPE
NIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPN
MGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAV
FVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK"
misc_feature 250069..251316
/gene="ybfO"
/locus_tag="BSU02310"
/note="Erythromycin esterase homolog [General function
prediction only]; Region: COG2312"
/db_xref="CDD:225194"
gene 251427..252314
/gene="ybfP"
/locus_tag="BSU02320"
/db_xref="GeneID:938428"
CDS 251427..252314
/gene="ybfP"
/locus_tag="BSU02320"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="NP_388114.1"
/db_xref="GI:16077301"
/db_xref="GeneID:938428"
/translation="MYYEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQK
EVGMSVASYIRLRRLANAAAALLYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGA
YRTFMKRFTSKKEESYMEKKMKGWVLSGSHPFQFEMGIDRENVHQGKASGYLKSTMVQ
DIGEFATMMQQFKADRYLGKRLRLSSFIKTKGVQHFASLWMRVDSAADDVLQFDNMSN
RPITGTTNWNHYAIVLDVPENSAVISFGVQLSGPGQVWMDHVVFEEVDESVPSTNLEM
PGELLDEPVNLSFEEELQK"
misc_feature 251487..251738
/gene="ybfP"
/locus_tag="BSU02320"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 251631..251741
/gene="ybfP"
/locus_tag="BSU02320"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
gene 252514..253482
/gene="ybfQ"
/locus_tag="BSU02330"
/db_xref="GeneID:938426"
CDS 252514..253482
/gene="ybfQ"
/locus_tag="BSU02330"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 10939241; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388115.1"
/db_xref="GI:16077302"
/db_xref="GeneID:938426"
/translation="MEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSE
GINGTVSGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLE
DDVDPNETTGQHLKPAEFYEKMQDPNTIVIDARNDYEYDLGHFRGAVRPDIEAFRELP
EWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTYGKDPEVQG
KLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENE
YKYMRSCSHECRTNPRNLYVKEHNMTEEEVNARLAAIETEDHAAAE"
misc_feature 252517..253455
/gene="ybfQ"
/locus_tag="BSU02330"
/note="putative rhodanese-related sulfurtransferase;
Provisional; Region: PRK00142"
/db_xref="CDD:234663"
misc_feature 252847..253149
/gene="ybfQ"
/locus_tag="BSU02330"
/note="Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins; Region: RHOD_YceA; cd01518"
/db_xref="CDD:238776"
misc_feature 253048..253050
/gene="ybfQ"
/locus_tag="BSU02330"
/note="active site residue [active]"
/db_xref="CDD:238776"
misc_feature 253369..253452
/gene="ybfQ"
/locus_tag="BSU02330"
/note="Protein of unknown function (DUF3650); Region:
DUF3650; pfam12368"
/db_xref="CDD:152803"
gene complement(253518..254762)
/gene="gltP"
/locus_tag="BSU02340"
/db_xref="GeneID:938421"
CDS complement(253518..254762)
/gene="gltP"
/locus_tag="BSU02340"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15849754, 16850406,
7751298; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="proton/glutamate symport protein"
/protein_id="NP_388116.1"
/db_xref="GI:16077303"
/db_xref="GeneID:938421"
/translation="MKKLIAFQILIALAVGAVIGHFFPDFGMALRPVGDGFIRLIKMI
VVPIVFSTIVIGAAGSGSMKKMGSLGIKTIIWFEVITTLVLGLGLLLANVLKPGVGLD
LSHLAKKDIHELSGYTDKVVDFKQMILDIIPTNIIDVMARNDLLAVIFFAILFGVAAA
GIGKASEPVMKFFESTAQIMFKLTQIVMVTAPIGVLALMAASVGQYGIELLLPMFKLV
GTVFLGLFLILFVLFPLVGLIFQIKYFEVLKMIWDLFLIAFSTTSTETILPQLMDRME
KYGCPKRVVSFVVPSGLSLNCDGSSLYLSVSCIFLAQAFQVDMTLSQQLLMMLVLVMT
SKGIAAVPSGSLVVLLATANAVGLPAEGVAIIAGVDRVMDMARTGVNVPGHAIACIVV
SKWEKAFRQKEWVSANSQTESI"
misc_feature complement(253554..254762)
/gene="gltP"
/locus_tag="BSU02340"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:224220"
misc_feature complement(253554..254762)
/gene="gltP"
/locus_tag="BSU02340"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
cl00573"
/db_xref="CDD:241958"
gene complement(254907..256802)
/gene="nagP"
/locus_tag="BSU02350"
/db_xref="GeneID:938418"
CDS complement(254907..256802)
/gene="nagP"
/locus_tag="BSU02350"
/EC_number="2.7.1.69"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 10627040, 15849754, 16850406; Product type t :
transporter"
/codon_start=1
/transl_table=11
/product="PTS system glucosamine-specific transporter
subunit IICBA"
/protein_id="NP_388117.1"
/db_xref="GI:16077304"
/db_xref="GeneID:938418"
/translation="MFKKAFQILQQLGRALMTPVAVLPAAGLLLRFGDKDLLNIPIIK
DAGGVVFDNLPLIFAVGVAIGLAGGEGVAGLAAVIGYLILTVTLDNMGKLLGLQPPYE
GAEHLIDMGVFGGIIIGLLAAYLYKRFSSIELHPVLGFFSGKRFVPIITSVSSLVIGV
IFSFVWPLIQNGINAASSLIADSTVGLFFYATIYRLLIPFGLHHIFYTPFYFMMGEYT
DPSTGNTVTGDLTRFFAGDPTAGRFMMGDFPYMIFCLPAVALAIIHTARPEKKKMISG
VMISAALTSMLTGITEPVEFSFLFVAPVLYLINSILAGVIFVVCDLFHVRHGYTFSGG
GIDYVLNYGLSTNGWVVIPVGIVFAFIYYYLFRFAILKWNLKTPGRETDEDGQNEEKA
PVAKDQLAFHVLQALGGQQNIANLDACITRLRVTVHQPSQVCKDELKRLGAVGVLEVN
NNFQAIFGTKSDALKDDIKTIMAGGVPATAAALDTVTDKPLKPDSDETFIYPIKGETV
SLGDVPDQVFSEKMMGEGFAIIPSEGKVVAPADGEIVSIFPTKHAIGFMSAGGTEILI
HVGIDTVKLNGEGFEAHVTSGQAVKQGELLLTFDLNYIKQHAASAITPVIFTNTSEED
LKHIQMK"
misc_feature complement(255630..256802)
/gene="nagP"
/locus_tag="BSU02350"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:224183"
misc_feature complement(255381..256799)
/gene="nagP"
/locus_tag="BSU02350"
/note="PTS system, glucose-specific IIBC component;
Region: PTS-II-BC-glcB; TIGR02002"
/db_xref="CDD:233681"
misc_feature complement(255387..255614)
/gene="nagP"
/locus_tag="BSU02350"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:238130"
misc_feature complement(255531..255551)
/gene="nagP"
/locus_tag="BSU02350"
/note="active site turn [active]"
/db_xref="CDD:238130"
misc_feature complement(255546..255548)
/gene="nagP"
/locus_tag="BSU02350"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238130"
misc_feature complement(254937..255308)
/gene="nagP"
/locus_tag="BSU02350"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cd00210"
/db_xref="CDD:238128"
misc_feature complement(order(254940..254942,254949..254951,
255045..255047,255081..255086,255090..255092,
255102..255104,255108..255116,255132..255140,
255156..255161,255165..255170,255234..255239,
255249..255260))
/gene="nagP"
/locus_tag="BSU02350"
/note="HPr interaction site; other site"
/db_xref="CDD:238128"
misc_feature complement(order(254949..254951,255075..255077,
255081..255086,255090..255092,255102..255104,
255108..255110,255147..255149,255159..255161,
255165..255167,255234..255239,255243..255245,
255249..255254,255258..255260))
/gene="nagP"
/locus_tag="BSU02350"
/note="glycerol kinase (GK) interaction site [polypeptide
binding]; other site"
/db_xref="CDD:238128"
misc_feature complement(order(255096..255098,255102..255104,
255147..255149,255153..255155))
/gene="nagP"
/locus_tag="BSU02350"
/note="active site"
/db_xref="CDD:238128"
misc_feature complement(255102..255104)
/gene="nagP"
/locus_tag="BSU02350"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238128"
gene complement(256823..257572)
/gene="nagBB"
/locus_tag="BSU02360"
/db_xref="GeneID:938425"
CDS complement(256823..257572)
/gene="nagBB"
/locus_tag="BSU02360"
/EC_number="3.5.99.6"
/function="16.11: Scavenge (Catabolism)"
/function="16.13: Shape"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="glucosamine-6-phosphate isomerase"
/protein_id="NP_388118.1"
/db_xref="GI:16077305"
/db_xref="GeneID:938425"
/translation="MKILIAEHYEELCKLSAAIIKEQIQAKKDAVLGLATGSTPVGLY
KQLISDYQAGEIDFSKVTTFNLDEYAGLSPSHPQSYNHFMHEHLFQHINMQPDHIHIP
QGDNPQLEAACKVYEDLIRQAGGIDVQILGIGANGHIGFNEPGSDFEDRTRVVKLSES
TIQANARFFGGDPVLVPRLAISMGIKTIMEFSKHIVLLASGEEKADAIQKMAEGPVTT
DVPASILQKHNHVTVIADYKAAQKLKSASFS"
misc_feature complement(256838..257572)
/gene="nagBB"
/locus_tag="BSU02360"
/note="6-phosphogluconolactonase/Glucosamine-6-phosphate
isomerase/deaminase [Carbohydrate transport and
metabolism]; Region: NagB; COG0363"
/db_xref="CDD:223440"
misc_feature complement(256844..257545)
/gene="nagBB"
/locus_tag="BSU02360"
/note="GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P)
deaminase subfamily; GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to D-fructose-6-phosphate
(Fru6P) and ammonium. The reaction is an aldo-keto
isomerization coupled with an amination or...; Region:
GlcN6P_deaminase; cd01399"
/db_xref="CDD:238693"
misc_feature complement(order(256961..256963,257072..257074,
257153..257155,257159..257161,257174..257179,
257372..257377,257456..257467))
/gene="nagBB"
/locus_tag="BSU02360"
/note="active site"
/db_xref="CDD:238693"
misc_feature complement(order(256889..256897,256919..256939,
257105..257107,257129..257134,257138..257140))
/gene="nagBB"
/locus_tag="BSU02360"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238693"
misc_feature complement(order(257105..257116,257132..257137))
/gene="nagBB"
/locus_tag="BSU02360"
/note="allosteric site; other site"
/db_xref="CDD:238693"
misc_feature complement(order(257042..257050,257060..257092,
257099..257101))
/gene="nagBB"
/locus_tag="BSU02360"
/note="active site lid [active]"
/db_xref="CDD:238693"
misc_feature complement(order(256844..256855,256862..256864,
256955..256957,256967..256969,257084..257086))
/gene="nagBB"
/locus_tag="BSU02360"
/note="hexamer (dimer of trimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:238693"
gene 257791..258498
/gene="ybgA"
/locus_tag="BSU02370"
/db_xref="GeneID:938422"
CDS 257791..258498
/gene="ybgA"
/locus_tag="BSU02370"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_388119.1"
/db_xref="GI:16077306"
/db_xref="GeneID:938422"
/translation="MTALYSVIKFKIIELIKSGKYQANDQLPTESEFCEQYDVSRTTV
RLALQQLELEGYIKRIQGKGTFVSAAKIQTPIPHKITSFAEQMRGLRSESKVLELVVI
PADHSIAELLKMKENEPVNKLVRVRYAEGEPLQYHTSYIPWKAAPGLAQEECTGSLFE
LLRTKYNIEISRGTESIEPILTDETISGHLLTNVGAPAFLSESLTYDKNEEVVEYAQI
ITRGDRTKFTVEQSYHS"
misc_feature 257791..258480
/gene="ybgA"
/locus_tag="BSU02370"
/note="Transcriptional regulators [Transcription]; Region:
PhnF; COG2188"
/db_xref="CDD:225099"
misc_feature 257800..257994
/gene="ybgA"
/locus_tag="BSU02370"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(257803..257805,257872..257874,257878..257883,
257905..257919,257923..257928,257935..257937,
257965..257970,257974..257985)
/gene="ybgA"
/locus_tag="BSU02370"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 258052..258468
/gene="ybgA"
/locus_tag="BSU02370"
/note="UTRA domain; Region: UTRA; pfam07702"
/db_xref="CDD:219527"
gene 258532..258807
/gene="ybgB"
/locus_tag="BSU02380"
/db_xref="GeneID:938423"
CDS 258532..258807
/gene="ybgB"
/locus_tag="BSU02380"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences; PubMedId: 12897008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388120.1"
/db_xref="GI:16077307"
/db_xref="GeneID:938423"
/translation="MFLFTNGKVLWGAVIAAFILSIVFYPFLPTQMPIHYDVANSPDL
TVNKLAGTVMLPVLMVVFAWARKINWQFVFAVYILLICHIVVLCLAL"
misc_feature 258538..>258738
/gene="ybgB"
/locus_tag="BSU02380"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5658"
/db_xref="CDD:227945"
misc_feature 258562..258711
/gene="ybgB"
/locus_tag="BSU02380"
/note="Protein of unknown function (DUF1648); Region:
DUF1648; pfam07853"
/db_xref="CDD:203782"
gene 259016..260086
/gene="ybgE"
/locus_tag="BSU02390"
/db_xref="GeneID:938420"
CDS 259016..260086
/gene="ybgE"
/locus_tag="BSU02390"
/EC_number="2.6.1.42"
/function="16.2: Construct biomass (Anabolism)"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the transamination of the branched-chain
amino acids to their respective alpha-keto acids"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid aminotransferase"
/protein_id="NP_388121.1"
/db_xref="GI:16077308"
/db_xref="GeneID:938420"
/translation="MNKLIEREKTVYYKEKPDPSSLGFGQYFTDYMFVMDYEEGIGWH
HPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERM
SMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIATEPSLGVKASRSYTFMI
VLSPVGSYYGDDQLKPVRIYVEDEYVRAVNGGVGFAKTAGNYAASLQAQRKANELGYD
QVLWLDAIEKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRASAIELIRSWGIPV
REERISIDEVYAASARGELTEVFGTGTAAVVTPVGELNIHGKTVIVGDGQIGDLSKKL
YETITDIQLGKVKGPFNWTVEV"
misc_feature 259016..260083
/gene="ybgE"
/locus_tag="BSU02390"
/note="branched-chain amino acid aminotransferase;
Provisional; Region: PRK13357"
/db_xref="CDD:237363"
misc_feature 259178..260047
/gene="ybgE"
/locus_tag="BSU02390"
/note="BCAT_beta_family: Branched-chain aminotransferase
catalyses the transamination of the branched-chain amino
acids leusine, isoleucine and valine to their respective
alpha-keto acids, alpha-ketoisocaproate,
alpha-keto-beta-methylvalerate and...; Region:
BCAT_beta_family; cd01557"
/db_xref="CDD:238798"
misc_feature order(259178..259192,259199..259213,259217..259219,
259223..259225,259316..259318,259427..259429,
259433..259435,259451..259459,259469..259471,
259490..259492,259610..259612,259625..259627,
259631..259633,259643..259645,259685..259687)
/gene="ybgE"
/locus_tag="BSU02390"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238798"
misc_feature order(259208..259210,259223..259225,259295..259297,
259463..259465,259604..259606,259619..259621,
259712..259714,259793..259798,259922..259924)
/gene="ybgE"
/locus_tag="BSU02390"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:238798"
misc_feature 259604..259606
/gene="ybgE"
/locus_tag="BSU02390"
/note="catalytic residue [active]"
/db_xref="CDD:238798"
gene complement(260123..261535)
/gene="ybgF"
/locus_tag="BSU02400"
/db_xref="GeneID:938415"
CDS complement(260123..261535)
/gene="ybgF"
/locus_tag="BSU02400"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406, 7704263; Product
type pt: transporter"
/codon_start=1
/transl_table=11
/product="aminoacid permease"
/protein_id="NP_388122.1"
/db_xref="GI:16077309"
/db_xref="GeneID:938415"
/translation="MNSAHNKNETTFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIQQ
AGPAGTILAYLVGAGIVYLVMLCLGELSVAMPVTGAFHTYAAKYIGPGTGFTVAWLYW
LTWTVALGSEFTAAGLLMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSS
IKVLAIVLFILLGGSAMFGIIPIKGGEAAPMLSNFTAEGGLFPNGFVPILMTMLSVNF
AFSGTELIGIAAGESVDPDKTIPKAIKTTVWRLSLFFVGTIFVLSGLIPIQDAGVIKS
PFVAVFDRVGVPYAADIMNFVILTAILSAANSGLYASSRMLWSLSKEKTLHPTFAKLT
SKGTPFNALVFSMIGGILSLLSSVFAPDTVYVVLVSISGFAVVVVWMGIAASQFMFRK
RYIEAGNKVTDLKYRTPLYPFVPIAAFLLCLASVVGIAFDPNQRIALYCGVPFMAICY
AIYYVKNRKSQPAADMTHSK"
misc_feature complement(260144..261535)
/gene="ybgF"
/locus_tag="BSU02400"
/note="S-methylmethionine transporter; Provisional;
Region: PRK11387"
/db_xref="CDD:236904"
gene complement(261656..262603)
/gene="mmuM"
/locus_tag="BSU02410"
/db_xref="GeneID:938412"
CDS complement(261656..262603)
/gene="mmuM"
/locus_tag="BSU02410"
/EC_number="2.1.1.10"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="converts homocysteine and S-adenosyl-methionine to
methionine and S-adenosyl-homocysteine or
S-methyl-methionine and homocysteine to two methionines"
/codon_start=1
/transl_table=11
/product="homocysteine methyltransferase"
/protein_id="NP_388123.1"
/db_xref="GI:16077310"
/db_xref="GeneID:938412"
/translation="MNPIQHILDTYPLIVLDGAMATELERKGCNLNDSLWSAKILMEE
PELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDE
FWSLEENRLNRPKPIIAASIGPYGAYLADGSEYRGNYAISEDELIEFHRPRMKALIEA
GADVLACETIPCLTEAKAIVRLLKEFPETYAWISFSAKDGLHISDGTPAADCASWLDE
HRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTWNGAACAESY
GASARTWHEKGARLIGGCCRTKPENIQEIAAWARSLKTT"
misc_feature complement(261671..262603)
/gene="mmuM"
/locus_tag="BSU02410"
/note="homocysteine methyltransferase; Provisional;
Region: mmuM; PRK09485"
/db_xref="CDD:181899"
misc_feature complement(261671..262567)
/gene="mmuM"
/locus_tag="BSU02410"
/note="Homocysteine S-methyltransferase; Region:
S-methyl_trans; pfam02574"
/db_xref="CDD:217114"
gene complement(262732..264168)
/gene="glnT"
/locus_tag="BSU02420"
/db_xref="GeneID:938419"
CDS complement(262732..264168)
/gene="glnT"
/locus_tag="BSU02420"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b: Function of strongly homologous gene;
PubMedId: 15849754, 15995196, 16850406; Product type t:
transporter"
/codon_start=1
/transl_table=11
/product="glutamine transporter"
/protein_id="NP_388124.2"
/db_xref="GI:255767059"
/db_xref="GeneID:938419"
/translation="MQQILEHIVGIANDLLWSKLLIVLLLSFGIYFTFRLKFLQVRML
KEMVRVLREGAASRSKNSISPFQAFCISMAARVGTGNITGIAIAIALGGPGAIFWMWI
IAIIGSASSFVESTLAQIYKVKDVNGFRGGPAYYMEKGLNKRWMGALFAVLITLSFGI
VFNSVQSNTVSLAFENAFGTNRLTLGLILIAVFGTIIFGGVKRIAKLAESIVVVLAVL
YIGVAFFVIFSNITQLPGVLALIVKNAFGFDQAAGGALGAALMQGVRRGIFSNEAGMG
SAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTAFIILFSDAYHTPGLSGIALTQ
ASLSSHVGSWASGFLAILILLFGFCALIGNYYYGETNIGFLNKSKKLIFVYRIGVLAM
IVFGCVAKVQLVWDLADLFMGLMVIVNLIAIFLLSKVVFTALKDYTRQKKAGKDPVFY
KDVLKNHNGIECWPVSDTKTDTHNKQIS"
misc_feature complement(262831..264084)
/gene="glnT"
/locus_tag="BSU02420"
/note="Na+/alanine symporter [Amino acid transport and
metabolism]; Region: AlsT; COG1115"
/db_xref="CDD:224040"
misc_feature complement(262858..264084)
/gene="glnT"
/locus_tag="BSU02420"
/note="Sodium:alanine symporter family; Region:
Na_Ala_symp; cl00548"
/db_xref="CDD:241939"
gene complement(264191..265174)
/gene="ybgJ"
/locus_tag="BSU02430"
/db_xref="GeneID:938416"
CDS complement(264191..265174)
/gene="ybgJ"
/locus_tag="BSU02430"
/EC_number="3.5.1.2"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of glutamate from
glutamine"
/codon_start=1
/transl_table=11
/product="glutaminase"
/protein_id="NP_388125.1"
/db_xref="GI:16077312"
/db_xref="GeneID:938416"
/translation="MKELIKEHQKDINPALQLHDWVEYYRPFAANGQSANYIPALGKV
NDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDRVDVEPT
GDAFNSIIRLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLIGKRP
RIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIG
LILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIM
ALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF"
misc_feature complement(264194..265165)
/gene="ybgJ"
/locus_tag="BSU02430"
/note="glutaminase; Reviewed; Region: PRK12357"
/db_xref="CDD:237074"
misc_feature complement(264194..265150)
/gene="ybgJ"
/locus_tag="BSU02430"
/note="Glutaminase [Amino acid transport and metabolism];
Region: GlsA; COG2066"
/db_xref="CDD:224977"
gene 265476..266708
/gene="glnJ"
/locus_tag="BSU02440"
/db_xref="GeneID:938417"
CDS 265476..266708
/gene="glnJ"
/locus_tag="BSU02440"
/EC_number="2.7.13.3"
/function="16.3: Control"
/function="16.12: Sense"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b: Function of strongly homologous gene;
PubMedId: 11717295, 15995196; Product type rc : receptor"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase GlnL for
glutamine degradation"
/protein_id="NP_388126.2"
/db_xref="GI:255767060"
/db_xref="GeneID:938417"
/translation="MLITVPLAGELKFYPLNEEFRVSFGAPVFFFFLSLLRHVPAVLP
GFLTGAAVFIFRVFLELWGGGHNGLTPILYDQASGFFFYMTYACLFSILKANRFRERP
IMLGFIGFMIEVVSDCVELTVQFLIFHTVVTPEKITDIAVIAISHTFIVMSFYSVLKL
YETQSREKQTRQQHEHMLMIVSNLYEETVHLKKTLKTTEKVTNDSYQLYREMKGKDVQ
LSGRILRLAGEIHEVKKDNQRIFAGLSKLISNESLRDYMRASDLLQLVIRMNEKYAEA
LGKQIDFYCSIEGEHDEYHVFIVLSIINNLTANAVEAMDEEGMVSLRLRKPNESMVEF
QVEDNGPGISEKIGDIVFDPGFTSKYDEFGTPSTGIGLSYVKEIVTELEGDITFDNQQ
RGVVFAIRLPVRHLIQKG"
misc_feature 266127..>266294
/gene="glnJ"
/locus_tag="BSU02440"
/note="Chorismate mutase type II; Region: CM_2; cl00693"
/db_xref="CDD:242033"
misc_feature <266205..266687
/gene="glnJ"
/locus_tag="BSU02440"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 266376..266678
/gene="glnJ"
/locus_tag="BSU02440"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(266388..266390,266400..266402,266409..266411,
266481..266483,266487..266489,266493..266495,
266499..266504,266580..266591,266637..266639,
266643..266645,266655..266660,266664..266666)
/gene="glnJ"
/locus_tag="BSU02440"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 266400..266402
/gene="glnJ"
/locus_tag="BSU02440"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(266493..266495,266499..266501,266580..266582,
266586..266588)
/gene="glnJ"
/locus_tag="BSU02440"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 266719..267663
/gene="glnL"
/locus_tag="BSU02450"
/db_xref="GeneID:938414"
CDS 266719..267663
/gene="glnL"
/locus_tag="BSU02450"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295, 15995196;
Product type r: regulator"
/codon_start=1
/transl_table=11
/product="two-component response regulator GlnJ for
glutamine utilisation"
/protein_id="NP_388127.1"
/db_xref="GI:16077314"
/db_xref="GeneID:938414"
/translation="MRFFIADDDRAVRSILRQIIEDEDLGEAAGEADDGSQVEGHMLQ
FKQIDILLIDLLMPGRDGIETIRQIQNTYSGKIVMISQVEAKEMVGEAYSLGIEYFIH
KPINRIEIVTVLQKVKERIELEHSIGAIQHSLSRLVNRTERKARPQQKSDSGLKEAGT
FLLSELGMMGEGGAHDLMAVLQYLAEHEQSEPHEKQSPSLKQIFTQVAVRKLGTGASQ
TEVNREMKASEQRIRRAIIHSLHHFASLGTTDFSNPKFETYASKFFDFPVVSQKMKEL
QSKDAKPLAPARINMKKFIHVFFLEAKLLHETMKQRRI"
misc_feature 266728..267069
/gene="glnL"
/locus_tag="BSU02450"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature 266728..267063
/gene="glnL"
/locus_tag="BSU02450"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature order(266737..266742,266878..266880,266902..266904,
266959..266961,267016..267018,267025..267030)
/gene="glnL"
/locus_tag="BSU02450"
/note="active site"
/db_xref="CDD:238088"
misc_feature 266878..266880
/gene="glnL"
/locus_tag="BSU02450"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(266887..266892,266896..266904)
/gene="glnL"
/locus_tag="BSU02450"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 267025..267033
/gene="glnL"
/locus_tag="BSU02450"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 267238..267612
/gene="glnL"
/locus_tag="BSU02450"
/note="YcbB domain; Region: YcbB; pfam08664"
/db_xref="CDD:149650"
gene 267890..268816
/gene="ycbC"
/locus_tag="BSU02460"
/db_xref="GeneID:938409"
CDS 267890..268816
/gene="ycbC"
/locus_tag="BSU02460"
/EC_number="4.2.1.41"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of 2,5-dioxopentanoate from
5-dehydro-4-deoxy-D-glucarate"
/codon_start=1
/transl_table=11
/product="5-dehydro-4-deoxyglucarate dehydratase"
/protein_id="NP_388128.2"
/db_xref="GI:255767061"
/db_xref="GeneID:938409"
/translation="MSRIRKAPAGILGFPVAPFNTQGKLEEEALFQNIEFLLNEGLEA
IFIACGSGEFQSLSQKEYEQMVEVAVSAAGGKVPVYTGVGGNLSTALDWAQLSEKKGA
DGYLILPPYLVHGEQEGLYQYAKTIIESTDLNAILYQRDNAVLSVEQIKRLTECEQLV
GVKDGVGNMDLNINLVYTIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHI
SRMFYDALKNGNDELVKELYRHVILPINDIRKQRKGYAVSLIKAGMEIMGLNVRNTAR
PPVGPVEKDHYQQLEAILKQAADRFPKKAATV"
misc_feature 267911..268777
/gene="ycbC"
/locus_tag="BSU02460"
/note="5-dehydro-4-deoxyglucarate dehydratase, also called
5-keto-4-deoxy-glucarate dehydratase (KDGDH); Region:
KDGDH; cd00951"
/db_xref="CDD:188638"
misc_feature 267917..268783
/gene="ycbC"
/locus_tag="BSU02460"
/note="Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell envelope
biogenesis, outer membrane]; Region: DapA; COG0329"
/db_xref="CDD:223406"
misc_feature order(268037..268042,268301..268303,268307..268309,
268376..268378,268451..268453)
/gene="ycbC"
/locus_tag="BSU02460"
/note="putative active site [active]"
/db_xref="CDD:188638"
misc_feature 268376..268378
/gene="ycbC"
/locus_tag="BSU02460"
/note="catalytic residue [active]"
/db_xref="CDD:188638"
gene 268846..270312
/gene="ycbD"
/locus_tag="BSU02470"
/db_xref="GeneID:938406"
CDS 268846..270312
/gene="ycbD"
/locus_tag="BSU02470"
/EC_number="1.2.1.26"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 12044674, 17202142; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="2,5-dioxovalerate dehydrogenase"
/protein_id="NP_388129.1"
/db_xref="GI:16077316"
/db_xref="GeneID:938406"
/translation="MSVITEQNTYLNFINGEWVKSQSGDMVKVENPADVNDIVGYVQN
STAEDVERAVTAANEAKTAWRKLTGAERGQYLYKTADIMEQRLEEIAACATREMGKTL
PEAKGETARGIAILRYYAGEGMRKTGDVIPSTDKDALMFTTRVPLGVVGVISPWNFPV
AIPIWKMAPALVYGNTVVIKPATETAVTCAKIIACFEEAGLPAGVINLVTGPGSVVGQ
GLAEHDGVNAVTFTGSNQVGKIIGQAALARGAKYQLEMGGKNPVIVADDADLEAAAEA
VITGAFRSTGQKCTATSRVIVQSGIYERFKEKLLQRTKDITIGDSLKEDVWMGPIASK
NQLDNCLSYIEKGKQEGASLLIGGEKLENGKYQNGYYVQPAIFDNVTSEMTIAQEEIF
GPVIALIKVDSIEEALNIANDVKFGLSASIFTENIGRMLSFIDEIDAGLVRINAESAG
VELQAPFGGMKQSSSHSREQGEAAKDFFTAIKTVFVKP"
misc_feature 268873..270303
/gene="ycbD"
/locus_tag="BSU02470"
/note="Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like;
Region: ALDH_KGSADH-YcbD; cd07097"
/db_xref="CDD:143415"
misc_feature 268897..270297
/gene="ycbD"
/locus_tag="BSU02470"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:215767"
misc_feature order(269302..269316,269338..269340,269383..269385,
269389..269394,269536..269547,269554..269556,
269563..269568,269608..269616,269710..269712,
270013..270015,270019..270021,270097..270099,
270214..270216)
/gene="ycbD"
/locus_tag="BSU02470"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143415"
misc_feature order(269314..269316,269608..269610,269701..269703,
269710..269712)
/gene="ycbD"
/locus_tag="BSU02470"
/note="catalytic residues [active]"
/db_xref="CDD:143415"
gene 270396..271763
/gene="gudP"
/locus_tag="BSU02480"
/db_xref="GeneID:938413"
CDS 270396..271763
/gene="gudP"
/locus_tag="BSU02480"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12044674, 15849754,
16850406; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="glucarate transporter"
/protein_id="NP_388130.2"
/db_xref="GI:255767062"
/db_xref="GeneID:938413"
/translation="MKKDFASVTPAGKKTSVRWFIVFMLFLVTSINYADRATLSITGD
SVQHDLGLDSVAMGYVFSAFGWAYVIGQLPGGWLLDRFGSKTIIALSIFFWSFFTLLQ
GAIGFFSAGTAIILLFALRFLVGLSEAPSFPGNGRVVASWFPSSERGTASAFFNSAQY
FAIVIFSPLMGWLTHSFGWHSVFVVMGIAGILLAVIWLKTVYEPKKHPKVNEAELAYI
EQGGGLISMDDSKSKQETESKWPYIKQLLTNRMLIGVYIAQYCITTLTYFFLTWFPVY
LVQARGMSILEAGFVASLPALCGFAGGVLGGIVSDILLKKGRSLTFARKVPIIAGMLL
SCSMIVCNYTDSAWLVVVIMSLAFFGKGFGALGWAVVSDTSPKECAGLSGGLFNTFGN
IASITTPIIIGYIVNATGSFNGALVFVGANAIAAILSYLLLVGPIKRVVLKKQEQDPD
QSLPV"
misc_feature 270459..271691
/gene="gudP"
/locus_tag="BSU02480"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 270474..271697
/gene="gudP"
/locus_tag="BSU02480"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:233174"
misc_feature order(270501..270503,270510..270518,270522..270527,
270576..270578,270585..270590,270597..270599,
270609..270614,270618..270623,270777..270782,
270789..270794,270801..270806,270813..270815,
270849..270854,270861..270866,270882..270884,
271182..271184,271191..271196,271203..271208,
271215..271217,271257..271259,271269..271271,
271281..271283,271290..271292,271302..271304,
271464..271466,271473..271478,271485..271487,
271497..271502,271509..271511,271542..271547,
271554..271559,271566..271571,271578..271580)
/gene="gudP"
/locus_tag="BSU02480"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 271800..273167
/gene="gudD"
/locus_tag="BSU02490"
/db_xref="GeneID:938410"
CDS 271800..273167
/gene="gudD"
/locus_tag="BSU02490"
/EC_number="4.2.1.40"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12044674; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="glucarate dehydratase"
/protein_id="NP_388131.2"
/db_xref="GI:255767063"
/db_xref="GeneID:938410"
/translation="MSSPIQEQVQKEKRSNIPSISEMKVIPVAGHDSMLLNLSGAHSP
FFTRNIVILTDSSGNQGVGEVPGGEHIRRTLELSEPLVVGKSIGAYQAILQTVRKQFG
DQDRGGRGNQTFDLRTTVHAVTALEAALLDLLGKFLQEPVAALLGEGKQRDEVKMLGY
LFYIGDRNRTTLPYQSDEQSDCAWFRLRHEEALTPEAIVRLAESAQERYGFQDFKLKG
GVLRGEEEIEAVTALSKRFPEARITLDPNGAWSLEEAIALCKGKQDVLAYAEDPCGDE
NGYSAREVMAEFRRATGLPTATNMIATDWREMGHAIQLHAVDIPLADPHFWTMQGSVR
VAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGRITAIDTHWIWQDGQRLTKQPF
EISSGCVKVPDKPGLGVDIDMEQVEKAHEIYRKMNLGARNDAIPMQFLISNWEFDRKR
PCLVR"
misc_feature 271842..273164
/gene="gudD"
/locus_tag="BSU02490"
/note="glucarate dehydratase; Region: glucar-dehydr;
TIGR03247"
/db_xref="CDD:211799"
misc_feature 271857..273077
/gene="gudD"
/locus_tag="BSU02490"
/note="D-Glucarate dehydratase (GlucD) catalyzes the
dehydration of both D-glucarate and L-idarate to form
5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction
of the catabolic pathway for (D)-glucarate. GlucD belongs
to the enolase superfamily of enzymes; Region:
D-glucarate_dehydratase; cd03323"
/db_xref="CDD:239439"
misc_feature order(271908..271910,271923..271925,272277..272279,
272442..272444,272448..272450,272532..272534,
272538..272540,272607..272609,272694..272696,
272844..272852,272931..272933)
/gene="gudD"
/locus_tag="BSU02490"
/note="active site"
/db_xref="CDD:239439"
misc_feature order(272070..272075,272082..272084,272208..272213,
272229..272240,272643..272648,272658..272660,
272664..272669,272712..272717,272727..272729,
272799..272801,272808..272810,272820..272831)
/gene="gudD"
/locus_tag="BSU02490"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:239439"
gene 273237..273938
/gene="ycbG"
/locus_tag="BSU02500"
/db_xref="GeneID:938411"
CDS 273237..273938
/gene="ycbG"
/locus_tag="BSU02500"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12044674; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_388132.2"
/db_xref="GI:255767064"
/db_xref="GeneID:938411"
/translation="MYEGLEDLKVDTVNRKTLAKQVIERIVHLLSSGQLRAGDKLPTE
MELMDILHVSRPVLREALSSLETLGVITRKTRGGTYFNDKIGMQPFSVMLALATDNLP
AIIEARMALELGLVTIAAEKINEEELQRLQKTIDDIANSTDNHYGEADKEFHRIIALS
ANNPVVEGMIQSLLITHAKIDSQIPYRERDVTVEYHKKIYDALAKRDPYKAHYHMYEH
LKFVRDKILKGMDEK"
misc_feature 273258..273932
/gene="ycbG"
/locus_tag="BSU02500"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:225097"
misc_feature 273285..273476
/gene="ycbG"
/locus_tag="BSU02500"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(273285..273287,273291..273293,273360..273362,
273366..273371,273393..273407,273411..273416,
273423..273425,273453..273458,273462..273473)
/gene="ycbG"
/locus_tag="BSU02500"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 273546..273893
/gene="ycbG"
/locus_tag="BSU02500"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:214892"
gene 274029..275561
/gene="garD"
/locus_tag="BSU02510"
/db_xref="GeneID:938407"
CDS 274029..275561
/gene="garD"
/locus_tag="BSU02510"
/EC_number="4.2.1.42"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b: Function of strongly homologous gene;
PubMedId: 9772162; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="D-galactarate dehydratase"
/protein_id="NP_388133.2"
/db_xref="GI:255767065"
/db_xref="GeneID:938407"
/translation="MAMNLRKNQAPLYIKVHEIDNTAIIVNDGGLPKGTVFSCGLVLE
EDVPQGHKVALTDLNQGDEIVRYGEVIGFADETIKRGSWIREALVRMPAPPALDDLPL
ANRVPQPRPPLEGYTFEGYRNADGSAGTKNILGITTSVQCVVGVLDYAVKRIKEELLP
KYPNVDDVVPLHHQYGCGVAINAPDAVIPIRTIQNLAKHPNFGGEVMVIGLGCEKLLP
ERIASENDDDILSLQDHRGFAAMIQSILEMAEERLIRLNSRTRVSCPVSDLVIGLQCG
GSDAFSGVTANPAVGYAADLLVRAGATVLFSEVTEVRDAIHLLTPRAVSEEVGQSLIK
EMKWYDSYLRRGDADRSANPSPGNKKGGLSNVVEKALGSVAKSGTSPISGVLGPGERA
KQKGLLFAATPASDFVCGTLQLAAGMNLQVFTTGRGTPYGLAAAPVLKVSTRHSLSEH
WADLIDINAGRIATGEASIEDVGWEIFRTILDVASGRKQTWADRWGLHNDLCLFNPAP
VT"
misc_feature 274062..275558
/gene="garD"
/locus_tag="BSU02510"
/note="galactarate dehydratase; Region: galactar-dH20;
TIGR03248"
/db_xref="CDD:188300"
misc_feature 274065..274280
/gene="garD"
/locus_tag="BSU02510"
/note="Domains similar to fish antifreeze type III
protein; Region: SAF_AH_GD; cd11613"
/db_xref="CDD:212158"
misc_feature 274368..275558
/gene="garD"
/locus_tag="BSU02510"
/note="D-galactarate dehydratase / Altronate hydrolase, C
terminus; Region: GD_AH_C; pfam04295"
/db_xref="CDD:218011"
gene 275838..276758
/gene="ycbJ"
/locus_tag="BSU02520"
/db_xref="GeneID:938408"
CDS 275838..276758
/gene="ycbJ"
/locus_tag="BSU02520"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12044674; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="phosphotransferase"
/protein_id="NP_388134.1"
/db_xref="GI:16077321"
/db_xref="GeneID:938408"
/translation="MTNLNEKQLITEIVGLARSQGLTVHSENAQLNETGMDFQVVFAK
DDTGMPWVLRKPRRSDVVERASAEGITLAFLRANLTADVPDWRIHTPELIAYPMLKGT
PAAGIDLEQKQYVWNMDHQPPSDDFVRTLADILAELHGTDQISAGQSGIEVIRPEDFR
QMTADSMVDVKNKLGVSTTLWERWQKWVDDDAYWPGFSSLIHGDLHPPHILIDQNGRV
TGLLDWTEAKVADPAKDFVLYQTIFGEKETARLLEYYDQAGGRIWAKMQEHISEMQAA
YPVEIAKLALQTQQEEHINMALEALGVTSD"
misc_feature 275877..276704
/gene="ycbJ"
/locus_tag="BSU02520"
/note="Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase; Region: MPH2';
cd05152"
/db_xref="CDD:240173"
misc_feature order(275925..275927,275955..275957,275991..275993,
275997..275999,276075..276077,276123..276134,
276447..276449,276459..276464,276468..276470,
276501..276506,276561..276563)
/gene="ycbJ"
/locus_tag="BSU02520"
/note="putative active site [active]"
/db_xref="CDD:240173"
misc_feature order(275925..275927,276447..276449,276561..276563)
/gene="ycbJ"
/locus_tag="BSU02520"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:240173"
misc_feature 275940..276644
/gene="ycbJ"
/locus_tag="BSU02520"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:216618"
misc_feature order(275955..275957,275991..275993,275997..275999,
276075..276077,276123..276134,276447..276449,
276459..276464,276468..276470,276501..276506)
/gene="ycbJ"
/locus_tag="BSU02520"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:240173"
gene 276815..277062
/locus_tag="BSU_misc_RNA_6"
/db_xref="GeneID:8303216"
misc_RNA 276815..277062
/locus_tag="BSU_misc_RNA_6"
/product="T-box"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:8303216"
gene 277160..277321
/gene="rtpA"
/locus_tag="BSU02530"
/db_xref="GeneID:938403"
CDS 277160..277321
/gene="rtpA"
/locus_tag="BSU02530"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10706627, 11557884,
12855807, 15099736, 15213402, 15743934, 16306262; Product
type r: regulator"
/codon_start=1
/transl_table=11
/product="anti-TRAP regulator"
/protein_id="NP_388135.1"
/db_xref="GI:16077322"
/db_xref="GeneID:938403"
/translation="MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQGYTLL
DFIQKHLNK"
misc_feature 277163..277318
/gene="rtpA"
/locus_tag="BSU02530"
/note="anti-TRAP (AT) protein specific to Bacilli; Region:
anti-TRAP; cd10748"
/db_xref="CDD:199910"
misc_feature order(277163..277189,277196..277198,277241..277243,
277253..277255,277262..277279,277283..277291,
277295..277318)
/gene="rtpA"
/locus_tag="BSU02530"
/note="dodecamer interface 2 [polypeptide binding]; other
site"
/db_xref="CDD:199910"
misc_feature order(277163..277174,277181..277186,277229..277240,
277247..277249,277253..277255,277259..277261,
277265..277267,277271..277285,277289..277318)
/gene="rtpA"
/locus_tag="BSU02530"
/note="dodecamer interface 1 [polypeptide binding]; other
site"
/db_xref="CDD:199910"
misc_feature order(277163..277171,277178..277186,277253..277255,
277265..277267,277274..277279,277283..277291,
277295..277312)
/gene="rtpA"
/locus_tag="BSU02530"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:199910"
misc_feature order(277175..277180,277187..277189,277196..277201,
277238..277243,277262..277276,277280..277285)
/gene="rtpA"
/locus_tag="BSU02530"
/note="TRAP binding interface [polypeptide binding]; other
site"
/db_xref="CDD:199910"
misc_feature order(277193..277195,277202..277204,277235..277237,
277244..277246)
/gene="rtpA"
/locus_tag="BSU02530"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:199910"
gene 277342..278280
/gene="ycbK"
/locus_tag="BSU02540"
/db_xref="GeneID:938405"
CDS 277342..278280
/gene="ycbK"
/locus_tag="BSU02540"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 10706627, 15063849, 15849754,
16850406, 16879415, 17114263; Product type pt :
transporter"
/codon_start=1
/transl_table=11
/product="efflux transporter"
/protein_id="NP_388136.1"
/db_xref="GI:16077323"
/db_xref="GeneID:938405"
/translation="MRAEEQSKIREAAAGTIFLLIGTVCFASKSIWIKWAYQMGAEPD
AVLLYRQLLAVPLFWLIFLIYRPPMPDGKKKGDLWKACGAGVFCFFLSPLLDFIGLNH
VSAMVERILLMSYPLFVFGFTACRDRKMSSIQDLFAVLAVMFGLFLALGGWNAELFQA
NMIGAVFILLSSAVYAGYLVLSGHLVHQIGGIRLNAYGMTAAGAAMMLYTGIKSAAGM
NTPMAAYPLSMYGLFAVIAVVTTVIPFVLMLEGIKRIGAQRAAAISMAGPILTIFYGA
LFLGERLGLIQVIGCGGVFFVITGMEYRKLKTGKKE"
misc_feature 277363..278256
/gene="ycbK"
/locus_tag="BSU02540"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
misc_feature <278002..278244
/gene="ycbK"
/locus_tag="BSU02540"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene 278377..279057
/gene="ycbL"
/locus_tag="BSU02550"
/db_xref="GeneID:938400"
CDS 278377..279057
/gene="ycbL"
/locus_tag="BSU02550"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="two-component response regulator YcbM"
/protein_id="NP_388137.2"
/db_xref="GI:255767066"
/db_xref="GeneID:938400"
/translation="MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDL
VLLDIMLPKLNGMDFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMI
ELTARVKAAIRRATQYSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLL
CLFASNPKKVFTKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWG
IGYKLGEF"
misc_feature 278377..279051
/gene="ycbL"
/locus_tag="BSU02550"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:223816"
misc_feature 278377..278712
/gene="ycbL"
/locus_tag="BSU02550"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature order(278386..278391,278518..278520,278542..278544,
278599..278601,278656..278658,278665..278670)
/gene="ycbL"
/locus_tag="BSU02550"
/note="active site"
/db_xref="CDD:238088"
misc_feature 278518..278520
/gene="ycbL"
/locus_tag="BSU02550"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature order(278527..278532,278536..278544)
/gene="ycbL"
/locus_tag="BSU02550"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature 278665..278673
/gene="ycbL"
/locus_tag="BSU02550"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature 278761..279045
/gene="ycbL"
/locus_tag="BSU02550"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:238225"
misc_feature order(278833..278835,278890..278895,278947..278949,
278956..278958,278980..278985,279019..279021,
279034..279036)
/gene="ycbL"
/locus_tag="BSU02550"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238225"
gene 279059..279994
/gene="ycbM"
/locus_tag="BSU02560"
/db_xref="GeneID:938397"
CDS 279059..279994
/gene="ycbM"
/locus_tag="BSU02560"
/function="16.3: Control"
/function="16.12: Sense"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295; Product type
rc: receptor"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase YcbL"
/protein_id="NP_388138.2"
/db_xref="GI:255767067"
/db_xref="GeneID:938397"
/translation="MTVLWVAAVIALACLNVIQFIMKKKRDGNLAYTADQLSYMLSRD
SAGQILLPTDDHALKDLLVNINLIVENRQQISAQFAKTEQSMKRMLTNMSHDLKTPLT
VILGYIEAIQSDPNMPDEERERLLGKLRQKTNELIQMINSFFDLAKLESEDKEIPITK
VHMNDICKRNILHYYDAVQSKGFQAAIDIPDTPVYAQANEEALDRILQNLLSNAIQYG
AAGKLIGLTLSYDERNIAITVWDRGKGISETDQQRVFERLYTLEESRNKAFQGSGLGL
TITKRLTEKMGGIISVQSKPYERTAFTITLKRMTY"
misc_feature <279230..279982
/gene="ycbM"
/locus_tag="BSU02560"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:223715"
misc_feature 279305..279502
/gene="ycbM"
/locus_tag="BSU02560"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(279323..279325,279335..279337,279347..279349,
279356..279358,279368..279370,279377..279379,
279431..279433,279443..279445,279452..279454,
279464..279466,279473..279475,279485..279487)
/gene="ycbM"
/locus_tag="BSU02560"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 279341..279343
/gene="ycbM"
/locus_tag="BSU02560"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 279665..279976
/gene="ycbM"
/locus_tag="BSU02560"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(279683..279685,279695..279697,279704..279706,
279773..279775,279779..279781,279785..279787,
279791..279796,279875..279886,279932..279934,
279938..279940,279953..279958,279962..279964)
/gene="ycbM"
/locus_tag="BSU02560"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 279695..279697
/gene="ycbM"
/locus_tag="BSU02560"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(279785..279787,279791..279793,279875..279877,
279881..279883)
/gene="ycbM"
/locus_tag="BSU02560"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene 280086..281009
/gene="ycbN"
/locus_tag="BSU02570"
/db_xref="GeneID:938404"
CDS 280086..281009
/gene="ycbN"
/locus_tag="BSU02570"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12486040; Product type pt :
transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_388139.2"
/db_xref="GI:255767068"
/db_xref="GeneID:938404"
/translation="MTYIVQTNGLTKTYQGKEVVSNVSMHIKKGEIYGFLGPNGAGKT
TIMKMLTSLVKPTSGEIIILGNKFTHTSYEVLGNIGSMIEYPIFYENLTAEENLDLHC
EYMGYHNKKAIQEVLDMVNLKQIDKKPVKTFSLGMKQRLGIARAILTKPDLLILDEPV
NGLDPLGIKKIRQLFQVLSKEYGMTLLISSHLLGEIEQIADTIGVIRDGRLLEEVSME
DVRGQNTEYIELVTPNQTRACFVLEKELQLTNFKILNEKTIRIYEAEASQAAISKALI
LNDVDIESMNKKYTSLEDYFIKLINGNSISA"
misc_feature 280086..280991
/gene="ycbN"
/locus_tag="BSU02570"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:224054"
misc_feature 280098..280727
/gene="ycbN"
/locus_tag="BSU02570"
/note="ATP-binding cassette domain of the
bacitracin-resistance transporter; Region:
ABC_BcrA_bacitracin_resist; cd03268"
/db_xref="CDD:213235"
misc_feature 280194..280217
/gene="ycbN"
/locus_tag="BSU02570"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213235"
misc_feature order(280203..280208,280212..280220,280335..280337,
280554..280559,280656..280658)
/gene="ycbN"
/locus_tag="BSU02570"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213235"
misc_feature 280326..280337
/gene="ycbN"
/locus_tag="BSU02570"
/note="Q-loop/lid; other site"
/db_xref="CDD:213235"
misc_feature 280482..280511
/gene="ycbN"
/locus_tag="BSU02570"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213235"
misc_feature 280542..280559
/gene="ycbN"
/locus_tag="BSU02570"
/note="Walker B; other site"
/db_xref="CDD:213235"
misc_feature 280566..280577
/gene="ycbN"
/locus_tag="BSU02570"
/note="D-loop; other site"
/db_xref="CDD:213235"
misc_feature 280644..280664
/gene="ycbN"
/locus_tag="BSU02570"
/note="H-loop/switch region; other site"
/db_xref="CDD:213235"
gene 281028..281714
/gene="ycbO"
/locus_tag="BSU02580"
/db_xref="GeneID:938401"
CDS 281028..281714
/gene="ycbO"
/locus_tag="BSU02580"
/function="16.1: Circulate"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="Na+-driven exporter or maturation protein"
/protein_id="NP_388140.3"
/db_xref="GI:255767069"
/db_xref="GeneID:938401"
/translation="MNLIRIELRKMKMGWYIRGALIANVIIMGFMWLISYSEKADGGV
SFQSTDEAFLIIGTFVRAVFIVFGAVLIVKLVISEYKNKTILVMFTYPISRKKLLTAK
LMIAGGLTFITILLSNILIAAGFFWLNSICHFIPGELTSEIISQQAVKMAVFAFGAAG
TSLVPIFFGMRRHSVPATIISSVVIVMLISSTSPGFSISSVVYIPLSLAAFGLFFSYM
AIRNADKQDA"
misc_feature 281028..>281399
/gene="ycbO"
/locus_tag="BSU02580"
/note="ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only]; Region: NosY; COG1277"
/db_xref="CDD:224196"
misc_feature 281040..>281390
/gene="ycbO"
/locus_tag="BSU02580"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_4; pfam12730"
/db_xref="CDD:221739"
gene complement(281769..282155)
/gene="ycbP"
/locus_tag="BSU02590"
/db_xref="GeneID:938402"
CDS complement(281769..282155)
/gene="ycbP"
/locus_tag="BSU02590"
/function="16.13: Shape"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pm:
membrane component"
/codon_start=1
/transl_table=11
/product="inner integral membrane protein"
/protein_id="NP_388141.1"
/db_xref="GI:16077328"
/db_xref="GeneID:938402"
/translation="MTHVKALAIKGIMTIIVLYLVLGLGFGFTFGDTLLMTIVLGVIS
YLLGDLYVLPKWNNMIATLADFGLAFLVIWLMGMPLSMGMTGGEVALAALFGAIVMAI
GEYCFHFYMMSKEIGKKHYLETRTDS"
misc_feature complement(281799..282155)
/gene="ycbP"
/locus_tag="BSU02590"
/note="Protein of unknown function (DUF2512); Region:
DUF2512; pfam10710"
/db_xref="CDD:151203"
gene 282469..282897
/gene="cwlJ"
/locus_tag="BSU02600"
/db_xref="GeneID:938399"
CDS 282469..282897
/gene="cwlJ"
/locus_tag="BSU02600"
/function="16.3: Control"
/function="16.5: Explore"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11466292, 11807087,
12177332, 16936016, 9515903; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="cell wall hydrolase"
/protein_id="NP_388142.2"
/db_xref="GI:255767070"
/db_xref="GeneID:938399"
/translation="MAVVRATSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRLRAN
CSDFKGLRTIRQMIYQPHAFEAVTHGYFYQRARDSERALARRSINGERRWPAKFSLWY
FRPQGDCPAQWYNQPFVARFKSHCFYQPTAETCENVYNTF"
misc_feature <282469..282876
/gene="cwlJ"
/locus_tag="BSU02600"
/note="Cell wall hydrolyses involved in spore germination
[Cell envelope biogenesis, outer membrane]; Region: SleB;
COG3773"
/db_xref="CDD:226296"
misc_feature 282535..282855
/gene="cwlJ"
/locus_tag="BSU02600"
/note="Cell Wall Hydrolase; Region: Hydrolase_2;
pfam07486"
/db_xref="CDD:219425"
gene 283003..283734
/gene="ycbR"
/locus_tag="BSU02610"
/db_xref="GeneID:938394"
CDS 283003..283734
/gene="ycbR"
/locus_tag="BSU02610"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388143.2"
/db_xref="GI:255767071"
/db_xref="GeneID:938394"
/translation="MATIDLQKKSVKIVLEKKQLTKVTARVGLVLDITGSMRPLYKNG
TVQNVVERILAVADQFDDNGLLDVWVYDNEFSRLKPVSEKDFSGYVDREILNNDRLHK
FGRNDEPPVMKDVLRKYVTEEPSSYPAFIVFINDGGCKKSIKPIIEASSDKPVFWQFV
GIGNGNFDFLNKLDTLEGRVIDNTNFLHIEEIDRISDDELYDALLAEFPFWLKEAKEK
GIVREQEPPAEKPKKKGFFSRLFSK"
misc_feature 283087..283578
/gene="ycbR"
/locus_tag="BSU02610"
/note="von Willebrand factor (vWF) type A domain; Region:
VWA; smart00327"
/db_xref="CDD:214621"
misc_feature order(283096..283098,283315..283317,283408..283410)
/gene="ycbR"
/locus_tag="BSU02610"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:238119"
gene 283816..283992
/gene="yczK"
/locus_tag="BSU02619"
/db_xref="GeneID:8302909"
CDS 283816..283992
/gene="yczK"
/locus_tag="BSU02619"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 6: Doubtful CDS"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003097673.1"
/db_xref="GI:255767072"
/db_xref="GeneID:8302909"
/translation="MGGLQTTGYAENASFSQLSACFSSRLVREDLFLMFSAYNQFTLL
HSRLTMISYNGDDQ"
gene 284011..285762
/gene="phoD"
/locus_tag="BSU02620"
/db_xref="GeneID:938391"
CDS 284011..285762
/gene="phoD"
/locus_tag="BSU02620"
/EC_number="3.1.4.1"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11719524, 12867413,
16698798; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="phosphodiesterase/alkaline phosphatase D"
/protein_id="NP_388144.2"
/db_xref="GI:255767073"
/db_xref="GeneID:938391"
/translation="MAYDSRFDEWVQKLKEESFQNNTFDRRKFIQGAGKIAGLSLGLT
IAQSVGAFEVNAAPNFSSYPFTLGVASGDPLSDSVVLWTRLAPDPLNGGGMPKQAVPV
KWEVAKDEHFRKIVRKGTEMAKPSLAHSVHVEADGLEPNKVYYYRFKTGHELSPVGKT
KTLPAPGANVPQMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYV
SKTGNVRTHNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANK
IPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFTYGNLASFNVLDT
RQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSSTAHWNVLAQQIFFAK
WNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFE
KTSSKIFGAEFVGTSITSGGNGADKRADTDQILKENPHIQFFNDYRGYVRCTVTPHQW
KADYRVMPFVTEPGAAISTRASFVYQKDQTGLRKVSSTTIQGGVKQSDEVEEDRFFSH
NKAHEKQMIKKRAKITN"
misc_feature 284074..285627
/gene="phoD"
/locus_tag="BSU02620"
/note="Phosphodiesterase/alkaline phosphatase D [Inorganic
ion transport and metabolism]; Region: PhoD; COG3540"
/db_xref="CDD:33342"
misc_feature 284530..>285027
/gene="phoD"
/locus_tag="BSU02620"
/note="Bacillus subtilis PhoD and related proteins,
metallophosphatase domain; Region: MPP_PhoD; cd07389"
/db_xref="CDD:163632"
misc_feature order(284548..284550,284554..284556,284629..284631,
284806..284811,285013..285015)
/gene="phoD"
/locus_tag="BSU02620"
/note="putative active site [active]"
/db_xref="CDD:163632"
misc_feature order(284548..284550,284554..284556,284629..284631,
284806..284808,285013..285015)
/gene="phoD"
/locus_tag="BSU02620"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163632"
misc_feature <285226..285408
/gene="phoD"
/locus_tag="BSU02620"
/note="Bacillus subtilis PhoD and related proteins,
metallophosphatase domain; Region: MPP_PhoD; cd07389"
/db_xref="CDD:163632"
gene 285775..285987
/gene="tatAD"
/locus_tag="BSU02630"
/db_xref="GeneID:938398"
CDS 285775..285987
/gene="tatAD"
/locus_tag="BSU02630"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 12867413, 15554971, 16678787, 19049517; Product
type t: transporter"
/codon_start=1
/transl_table=11
/product="twin-arginine pre-protein translocation pathway
protein"
/protein_id="NP_388145.2"
/db_xref="GI:255767074"
/db_xref="GeneID:938398"
/translation="MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSAT
KSLVSGDEKEEKSAELTAVKQDKNAG"
misc_feature 285775..285951
/gene="tatAD"
/locus_tag="BSU02630"
/note="twin arginine translocase protein A; Provisional;
Region: tatA; PRK14861"
/db_xref="CDD:237837"
gene 286048..286776
/gene="tatCD"
/locus_tag="BSU02640"
/db_xref="GeneID:938395"
CDS 286048..286776
/gene="tatCD"
/locus_tag="BSU02640"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16698798, 19049517;
Product type t: transporter"
/codon_start=1
/transl_table=11
/product="twin-arginine pre-protein translocation pathway
protein"
/protein_id="NP_388146.2"
/db_xref="GI:255767075"
/db_xref="GeneID:938395"
/translation="MDKKETHLIGHLEELRRRIIVTLAAFFLFLITAFLFVQDIYDWL
IRDLDGKLAVLGPSEILWVYMMLSGICAIAASIPVAAYQLWRFVAPALTKTERKVTLM
YIPGLFALFLAGISFGYFVLFPIVLSFLTHLSSGHFETMFTADRYFRFMVNLSLPFGF
LFEMPLVVMFLTRLGILNPYRLAKARKLSYFLLIVVSILITPPDFISDFLVMIPLLVL
FEVSVTLSAFVYKKRMREETAAAA"
misc_feature 286048..286773
/gene="tatCD"
/locus_tag="BSU02640"
/note="Sec-independent protein secretion pathway component
TatC [Intracellular trafficking and secretion]; Region:
TatC; COG0805"
/db_xref="CDD:31148"
gene complement(286773..287420)
/gene="pcp"
/locus_tag="BSU02650"
/db_xref="GeneID:938396"
CDS complement(286773..287420)
/gene="pcp"
/locus_tag="BSU02650"
/EC_number="3.4.19.3"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the removal of 5-oxoproline from various
penultimate amino acid residues except L-proline"
/codon_start=1
/transl_table=11
/product="pyrrolidone-carboxylate peptidase"
/protein_id="NP_388147.1"
/db_xref="GI:16077334"
/db_xref="GeneID:938396"
/translation="MRKKVLITGFDPFDKETVNPSWEAAKRLNGFETEEAIITAEQIP
TVFRSALDTLRQAIQKHQPDIVICVGQAGGRMQITPERVAINLADARIPDNEGHQPID
EEISPDGPAAYWTRLPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHISRTSP
HIRGGFIHIPYIPQQTIDKTAPSLSLDTIVRALRIAAVTAAQYDEDVKSPGGTLH"
misc_feature complement(286833..287414)
/gene="pcp"
/locus_tag="BSU02650"
/note="Pyroglutamyl peptidase (PGP) type I, also known as
pyrrolidone carboxyl peptidase (pcp) type I: Enzymes
responsible for cleaving pyroglutamate (pGlu) from the
N-terminal end of specialized proteins. The N-terminal
pGlu protects these proteins from...; Region:
Peptidase_C15; cd00501"
/db_xref="CDD:238279"
misc_feature complement(order(286989..286997,287286..287288,
287382..287384,287391..287393))
/gene="pcp"
/locus_tag="BSU02650"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:238279"
misc_feature complement(order(286866..286868,286872..286877,
286893..286895,286899..286904,287019..287033,
287040..287042,287190..287198))
/gene="pcp"
/locus_tag="BSU02650"
/note="AC domain interface; other site"
/db_xref="CDD:238279"
misc_feature complement(order(286917..286919,286989..286991,
287178..287180))
/gene="pcp"
/locus_tag="BSU02650"
/note="catalytic triad [active]"
/db_xref="CDD:238279"
misc_feature complement(order(286998..287000,287007..287012,
287061..287063,287079..287090,287115..287120,
287148..287150,287154..287156,287160..287162,
287172..287177))
/gene="pcp"
/locus_tag="BSU02650"
/note="AB domain interface; other site"
/db_xref="CDD:238279"
misc_feature complement(286866..286868)
/gene="pcp"
/locus_tag="BSU02650"
/note="interchain disulfide; other site"
/db_xref="CDD:238279"
gene 287499..288611
/gene="ycbU"
/locus_tag="BSU02660"
/db_xref="GeneID:938393"
CDS 287499..288611
/gene="ycbU"
/locus_tag="BSU02660"
/EC_number="2.8.1.7"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="cysteine desulfurase"
/protein_id="NP_388148.2"
/db_xref="GI:255767076"
/db_xref="GeneID:938393"
/translation="MEHLPEQYRQLFPTLQTHTMLASCSQSALAEPVSRAIQDYYDSL
LYKGTNWKEAIEKTEFARNEFAKLIGAEPDEVAIVPSVSDALVSVASSLTAFGKKHVV
YTDMDFPAVPHVWQAHSDYTVSVIPSIDGVLPLEQYETHISDETVLTCVPHVHYRDGY
VQDIKAIAEISQRKGSLLFVDAYQSAGHIPIDVKEWGVDMLAAGTRKYLLGIPGVAFL
YVRKELADALKPKASAWFGRESGFDGAYAKVARRFQTGTPAFISVYAAAAALSLLNHI
GVSHIRDHVKTICADAVQYAAEKGLQLAAAQGGIQPGMVAIRDERASETAGLLKKKKV
ICAPRENVIRLAPHFYNTKEEMRHAIDEIAAKTIHK"
misc_feature 287511..288593
/gene="ycbU"
/locus_tag="BSU02660"
/note="Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones]; Region: csdA; COG0520"
/db_xref="CDD:223594"
misc_feature 287562..288563
/gene="ycbU"
/locus_tag="BSU02660"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(287742..287747,287754..287756,287955..287957,
288039..288041,288048..288050,288108..288110,
288117..288119)
/gene="ycbU"
/locus_tag="BSU02660"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 288117..288119
/gene="ycbU"
/locus_tag="BSU02660"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(288653..290092)
/gene="lmrB"
/locus_tag="BSU02670"
/db_xref="GeneID:938388"
CDS complement(288653..290092)
/gene="lmrB"
/locus_tag="BSU02670"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15317768, 15849754,
16850406; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="efflux transporter; drug-export protein"
/protein_id="NP_388149.1"
/db_xref="GI:16077336"
/db_xref="GeneID:938388"
/translation="MILETTAKASQQYKVMPIMISLLLAGFIGMFSETALNIALTDLM
KELNITAATVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFTVSLIFSILGTFIAALA
PSFSFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMFAPAIGPTF
SGLVLEHLNWHWIFWISLPFLVLALVFGIAYMQNVSETTKPKIDVLSIILSTIGFGGI
VFGFSNAGEGSGGWSSPTVIVSLIVGVVGLILFSIRQLTMKQPMMNLRAFKYPMFILG
VIMVFICMMVILSSMLLLPMYLQGGLVLTAFASGLVLLPGGILNGFMSPVTGRLFDKY
GPKWLVIPGFVIVTVVLWFFSNVTTTSTAVLIIILHTCLMIGISMIMMPAQTNGLNQL
PREFYPDGTAIMNTLQQMAGAIGTAVAVSIMAAGQHDYMSTVKNPADPAVIPQALTAG
VQHAFVFAMIVAIIGLIGAFFMKRVKVDH"
misc_feature complement(<289517..290038)
/gene="lmrB"
/locus_tag="BSU02670"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(288845..290029)
/gene="lmrB"
/locus_tag="BSU02670"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
misc_feature complement(order(289631..289633,289649..289654,
289661..289666,289700..289702,289709..289714,
289721..289726,289733..289738,289874..289879,
289883..289888,289898..289900,289907..289912,
289919..289921,289970..289975,289979..289987,
289994..289996))
/gene="lmrB"
/locus_tag="BSU02670"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(288791..>289300)
/gene="lmrB"
/locus_tag="BSU02670"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(290132..290698)
/gene="lmrA"
/locus_tag="BSU02680"
/db_xref="GeneID:938385"
CDS complement(290132..290698)
/gene="lmrA"
/locus_tag="BSU02680"
/function="16.3: Control"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12718394, 15317768,
17483215; Product type r: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional repressor"
/protein_id="NP_388150.1"
/db_xref="GI:16077337"
/db_xref="GeneID:938385"
/translation="MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYY
HFPGGKEQLAIEAVNEMKEYIRQKIADCMEACTDPAEGIQAFLKELSCQFSCTEDIEG
LPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKEASTVVNAMIE
GGILLSLTAKNSTPLLHISSCIPDLLKR"
misc_feature complement(290198..290686)
/gene="lmrA"
/locus_tag="BSU02680"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:224228"
misc_feature complement(290528..290671)
/gene="lmrA"
/locus_tag="BSU02680"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 290915..292042
/gene="ansZ"
/locus_tag="BSU02690"
/db_xref="GeneID:938392"
CDS 290915..292042
/gene="ansZ"
/locus_tag="BSU02690"
/function="16.11: Scavenge (Catabolism)"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11914346, 17686772;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="L-asparaginase"
/protein_id="NP_388151.1"
/db_xref="GI:16077338"
/db_xref="GeneID:938392"
/translation="MKKQRMLVLFTALLFVFTGCSHSPETKESPKEKAQTQKVSSASA
SEKKDLPNIRILATGGTIAGADQSKTSTTEYKAGVVGVESLIEAVPEMKDIANVSGEQ
IVNVGSTNIDNKILLKLAKRINHLLASDDVDGIVVTHGTDTLEETAYFLNLTVKSDKP
VVIVGSMRPSTAISADGPSNLYNAVKVAGAPEAKGKGTLVVLNDRIASARYVTKTNTT
TTDTFKSEEMGFVGTIADDIYFNNEITRKHTKDTDFSVSNLDELPQVDIIYGYQNDGS
YLFDAAVKAGAKGIVFAGSGNGSLSDAAEKGADSAVKKGVTVVRSTRTGNGVVTPNQD
YAEKDLLASNSLNPQKARMLLMLALTKTNDPQKIQAYFNEY"
misc_feature 291065..292021
/gene="ansZ"
/locus_tag="BSU02690"
/note="Type II (periplasmic) bacterial L-asparaginase;
Region: L-asparaginase_II; cd08964"
/db_xref="CDD:199208"
misc_feature order(291092..291097,291233..291241,291332..291340,
291410..291412,291554..291556,291809..291811)
/gene="ansZ"
/locus_tag="BSU02690"
/note="active site"
/db_xref="CDD:199208"
misc_feature order(291095..291097,291239..291253,291260..291262,
291338..291340,291350..291352,291416..291418,
291431..291439,291446..291451,291521..291526,
291536..291538,291542..291544,291554..291565,
291569..291571,291599..291607,291611..291613,
291617..291619,291629..291631,291635..291643,
291647..291652,291713..291715,291719..291721,
291725..291727,291737..291739,291743..291745,
291767..291769,291773..291775,291797..291805,
291809..291811,291815..291817,291878..291883,
291902..291907)
/gene="ansZ"
/locus_tag="BSU02690"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
misc_feature order(291239..291253,291260..291262,291338..291343,
291347..291355,291554..291568,291707..291715,
291719..291721,291725..291727,291737..291739,
291743..291748,291755..291760,291767..291769,
291773..291775,291797..291805,291809..291817,
291878..291886,291893..291898,291956..291961,
291968..291970)
/gene="ansZ"
/locus_tag="BSU02690"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
gene 292205..292843
/gene="estA"
/locus_tag="BSU02700"
/db_xref="GeneID:938389"
CDS 292205..292843
/gene="estA"
/locus_tag="BSU02700"
/EC_number="3.1.1.3"
/function="16.8: Protect"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15812018, 18053819,
11029590, 8396026; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="secreted alkaliphilic lipase"
/protein_id="NP_388152.1"
/db_xref="GI:16077339"
/db_xref="GeneID:938389"
/translation="MKFVKRRIIALVTILMLSVTSLFALQPSAKAAEHNPVVMVHGIG
GASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVLDETGAKKV
DIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTDPNQKILYTSIY
SSADMIVMNYLSRLDGARNVQIHGVGHIGLLYSSQVNSLIKEGLNGGGQNTN"
misc_feature 292304..>292609
/gene="estA"
/locus_tag="BSU02700"
/note="Lipase (class 2); Region: Lipase_2; pfam01674"
/db_xref="CDD:216642"
misc_feature 292313..292765
/gene="estA"
/locus_tag="BSU02700"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:221720"
gene complement(292881..293264)
/gene="yczC"
/locus_tag="BSU02710"
/db_xref="GeneID:938390"
CDS complement(292881..293264)
/gene="yczC"
/locus_tag="BSU02710"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pm:
membrane component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388153.1"
/db_xref="GI:16077340"
/db_xref="GeneID:938390"
/translation="MELAGFMLRACALLLDVIIAAAVILAAGFTFGDGSAGVIIVAIL
MLIVYPLLMPLTNWKGTLGKKIIGLQIVRDETYKKISFPQAIVRYLIAWVHVFSRLIY
LTAAFTKKKQTVHDMAAKTIVLKAE"
misc_feature complement(292884..>293150)
/gene="yczC"
/locus_tag="BSU02710"
/note="Predicted membrane protein/domain [Function
unknown]; Region: COG1714"
/db_xref="CDD:224628"
gene 293499..294575
/gene="yccF"
/locus_tag="BSU02720"
/db_xref="GeneID:938387"
CDS 293499..294575
/gene="yccF"
/locus_tag="BSU02720"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388154.1"
/db_xref="GI:16077341"
/db_xref="GeneID:938387"
/translation="MGKVKRNAPCPCGSGKKYKKCCGSKVVDFPAELAAKEAKQIQED
LVEYAFTVHRESISGFINQHDFLSAMDRQTKDISVFNLGIWGIFFHPLAGEKTIFEEY
LQKKGDSITRPKTREIVESWQSMTPALLLLKDLKEGIIHFEDVITAKQFEVEMDASNQ
DLPPVGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKYADAAVKDGKTPEDF
MKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEGMSGEEYPTELI
PAVIDIWKTFCEKKSPVIRKPEAFAAAVEYYVNAISLNGASVSQAKLAKKYGVSASTI
SSRYKEIESTLQDEADRFAQALSS"
misc_feature 293592..294251
/gene="yccF"
/locus_tag="BSU02720"
/note="Predicted metal-binding protein related to the
C-terminal domain of SecA [General function prediction
only]; Region: COG3318"
/db_xref="CDD:225855"
misc_feature 294390..294536
/gene="yccF"
/locus_tag="BSU02720"
/note="helix-turn-helix, Psq domain; Region: HTH_psq;
pfam05225"
/db_xref="CDD:203213"
gene complement(294615..295571)
/gene="natK"
/locus_tag="BSU02730"
/db_xref="GeneID:938382"
CDS complement(294615..295571)
/gene="natK"
/locus_tag="BSU02730"
/function="16.12: Sense"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295, 17322186;
Product type rc: receptor"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase NatR"
/protein_id="NP_388155.1"
/db_xref="GI:16077342"
/db_xref="GeneID:938382"
/translation="MITLFQCLYLILFSFICYQGAAAFSHSTAASWLAAALGAAAAGL
YIWNTKRVWKHCSSGLCAWIAVIQVMSVGVVLIGTDIMPVLCVIAIFAGCEGLRIGQS
ALQARLSDQIDKLTQAEQHANQMLIDVRSRNHDTMKHITAIKSAQPKADTQAYIQNWA
DQYSQYDRFLKGENAYVAGVLYDFLEKARASNVSVSLHMHTPLSSLPFSPADQVSLVG
NILENALDSAAEAREKAEIKLETSLRSGLYVLTCENSTPGMDPKVLDTIYQSFGRSTK
NGAHEGMGTYIIQKLVKGAFGRLDFTYRHPIFRLEIKIPFQK"
misc_feature complement(294618..>295571)
/gene="natK"
/locus_tag="BSU02730"
/note="Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms]; Region: CitA; COG3290"
/db_xref="CDD:225827"
misc_feature complement(294636..294929)
/gene="natK"
/locus_tag="BSU02730"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(order(294648..294650,294663..294665,
294669..294671,294717..294728,294795..294800,
294804..294806,294810..294812,294816..294818,
294894..294896,294903..294905,294915..294917))
/gene="natK"
/locus_tag="BSU02730"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(294903..294905)
/gene="natK"
/locus_tag="BSU02730"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(294720..294722,294726..294728,
294798..294800,294804..294806))
/gene="natK"
/locus_tag="BSU02730"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
gene complement(295584..296285)
/gene="natR"
/locus_tag="BSU02740"
/db_xref="GeneID:938379"
CDS complement(295584..296285)
/gene="natR"
/locus_tag="BSU02740"
/function="16.3: Control"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11717295, 17322186;
Product type r: regulator"
/codon_start=1
/transl_table=11
/product="two-component response regulator NatK"
/protein_id="NP_388156.1"
/db_xref="GI:16077343"
/db_xref="GeneID:938379"
/translation="MVKVGLVDDYRVDLEKLEAIVSRMQDVEIVFSTDSAKEAYRRVK
NGDIDLLLADIEMPHMSGYELADLIKSHSLDVDVIFVTGHGGYAVHAFDLNVHDYIMK
PYYADRLAASFDRYLKKKTETSLNGRILIKQKSEMHVLQKKDIIFAERTGRSTTIVTT
AEEVQTYQTLNDIKGDLPEKDFLRSHRSFIINIHYIKHFSAYTKHSFTVSFEGTSKKA
MITKQQLDYFQNYYF"
misc_feature complement(295590..296285)
/gene="natR"
/locus_tag="BSU02740"
/note="Response regulator of the LytR/AlgR family
[Transcription / Signal transduction mechanisms]; Region:
LytT; COG3279"
/db_xref="CDD:225818"
misc_feature complement(295935..296270)
/gene="natR"
/locus_tag="BSU02740"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(295977..295982,295989..295991,
296040..296042,296100..296102,296124..296126,
296259..296264))
/gene="natR"
/locus_tag="BSU02740"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(296124..296126)
/gene="natR"
/locus_tag="BSU02740"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(296100..296108,296112..296117))
/gene="natR"
/locus_tag="BSU02740"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(295974..295982)
/gene="natR"
/locus_tag="BSU02740"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
misc_feature complement(295602..295883)
/gene="natR"
/locus_tag="BSU02740"
/note="LytTr DNA-binding domain; Region: LytTR; pfam04397"
/db_xref="CDD:218063"
gene 296429..297169
/gene="natA"
/locus_tag="BSU02750"
/db_xref="GeneID:938386"
CDS 296429..297169
/gene="natA"
/locus_tag="BSU02750"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10356997, 17322186;
Product type t: transporter"
/codon_start=1
/transl_table=11
/product="Na+ ABC efflux transporter ATP-binding protein"
/protein_id="NP_388157.1"
/db_xref="GI:16077344"
/db_xref="GeneID:938386"
/translation="MITLTDCSRRFQDKKKVVKAVRDVSLTIEKGEVVGILGENGAGK
TTMLRMIASLLEPSQGVITVDGFDTVKQPAEVKQRIGVLFGGETGLYDRMTAKENLQY
FGRLYGLNRHEIKARIEDLSKRFGMRDYMNRRVGGFSKGMRQKVAIARALIHDPDIIL
FDEPTTGLDITSSNIFREFIQQLKREQKTILFSSHIMEEVQALCDSVIMIHSGEVIYR
GALESLYESERSEDLNYIFMSKLVRGIS"
misc_feature 296429..297160
/gene="natA"
/locus_tag="BSU02750"
/note="ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism]; Region: NatA; COG4555"
/db_xref="CDD:226927"
misc_feature 296429..297085
/gene="natA"
/locus_tag="BSU02750"
/note="ATP-binding cassette domain of the Na+ transporter;
Region: ABC_NatA_sodium_exporter; cd03266"
/db_xref="CDD:213233"
misc_feature 296540..296563
/gene="natA"
/locus_tag="BSU02750"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213233"
misc_feature order(296549..296554,296558..296566,296681..296683,
296912..296917,297011..297013)
/gene="natA"
/locus_tag="BSU02750"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213233"
misc_feature 296672..296683
/gene="natA"
/locus_tag="BSU02750"
/note="Q-loop/lid; other site"
/db_xref="CDD:213233"
misc_feature 296840..296869
/gene="natA"
/locus_tag="BSU02750"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213233"
misc_feature 296900..296917
/gene="natA"
/locus_tag="BSU02750"
/note="Walker B; other site"
/db_xref="CDD:213233"
misc_feature 296924..296935
/gene="natA"
/locus_tag="BSU02750"
/note="D-loop; other site"
/db_xref="CDD:213233"
misc_feature 296999..297019
/gene="natA"
/locus_tag="BSU02750"
/note="H-loop/switch region; other site"
/db_xref="CDD:213233"
gene 297170..298330
/gene="natB"
/locus_tag="BSU02760"
/db_xref="GeneID:938383"
CDS 297170..298330
/gene="natB"
/locus_tag="BSU02760"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10356997, 15849754,
16850406, 17322186; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="Na+ ABC efflux transporter permease"
/protein_id="NP_388158.1"
/db_xref="GI:16077345"
/db_xref="GeneID:938383"
/translation="MLSHIYKKEMIDALRDRKTILLTILVPMIMMLGLVFFYESMLSD
KGEQYTLAVGHSLPPALESKLNEIDEISVKTFAKPEEAVDEGKADAYLNVPKEFDSYV
NSMTPFKVDVYGNSIDQGSSNAMQLVQSALDQYKNEIVQQRLTNKHIDQSVIQPFTIQ
QKEADEEKGTSAIMLSAILPMLILTSIVSGAMPIALDIMAGEKDRKSIEALLLTPVSR
NKVLVGKWLAVSTFGVASGVFALVFLILSTVLFTENLKTAFQLGDHMWSVIGASALII
VLSALLISAMELFISIMSSSVKEAQSYMSLVVFLPVFPMFFIFSKAPNQFDLSYFLIP
FLNLHALFKQLLFGMVDPATILSTSGTIAVLIAIFFLLARACFLKDKWVLPK"
misc_feature 297170..298312
/gene="natB"
/locus_tag="BSU02760"
/note="ABC-type Na+ efflux pump, permease component
[Energy production and conversion / Inorganic ion
transport and metabolism]; Region: NatB; COG1668"
/db_xref="CDD:224582"
misc_feature 297629..>297958
/gene="natB"
/locus_tag="BSU02760"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_2; cl17866"
/db_xref="CDD:248420"
gene 298466..299398
/gene="yccK"
/locus_tag="BSU02770"
/db_xref="GeneID:938384"
CDS 298466..299398
/gene="yccK"
/locus_tag="BSU02770"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 17322186; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="ion channel associated enzyme"
/protein_id="NP_388159.1"
/db_xref="GI:16077346"
/db_xref="GeneID:938384"
/translation="MDQTRTLGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRT
ALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATKGAHKEVDGSIELDNSR
EFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLD
YQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLTGKFT
QDTVFDDFRKDKPQFQGETFIHNLKKVDKLKAVAEEKQADTAHVALAWLLTRPAIDAI
IPGAKRPEQLQDNLKTLNIELTEDEVNFISDIFK"
misc_feature 298475..299389
/gene="yccK"
/locus_tag="BSU02770"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 298511..299395
/gene="yccK"
/locus_tag="BSU02770"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:215817"
misc_feature order(298523..298531,298625..298627,298640..298642,
298721..298723,298844..298849,298934..298939,
298994..298996,299078..299095,299243..299245,
299294..299305,299318..299320,299327..299332)
/gene="yccK"
/locus_tag="BSU02770"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(298625..298627,298640..298642,298721..298723,
298844..298846)
/gene="yccK"
/locus_tag="BSU02770"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(299438..300502)
/gene="ycdA"
/locus_tag="BSU02780"
/db_xref="GeneID:938380"
CDS complement(299438..300502)
/gene="ycdA"
/locus_tag="BSU02780"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type lp: lipoprotein"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="NP_388160.1"
/db_xref="GI:16077347"
/db_xref="GeneID:938380"
/translation="MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQ
VKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDT
DPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYL
SASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSL
SDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQ
WQLDMDDYRAAELVEAFIKE"
misc_feature complement(300077..300373)
/gene="ycdA"
/locus_tag="BSU02780"
/note="Domain of unknown function (DUF4352); Region:
DUF4352; pfam11611"
/db_xref="CDD:221149"
gene 300830..302248
/gene="ycdB"
/locus_tag="BSU02790"
/db_xref="GeneID:938381"
CDS 300830..302248
/gene="ycdB"
/locus_tag="BSU02790"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_388161.1"
/db_xref="GI:16077348"
/db_xref="GeneID:938381"
/translation="MKGAAFVKKEGLKQKALEIGRVPTHLKLEIEDYGGDDKRAHFCW
ADPQDENTGIIVELGPDGELESLSRDIEPESGERLSEEKLEDIMRQFVETHHPGALSA
FVREENDRAYGDKVRFSYVQMEAGLPLPMSGFMADVSLSGEIVYFRYYGEAGSIIKPK
RVADVEEALAFIKKDVEFDLLFEVLHRSVYKNGDDQPHLVYEPEGRAITVPADLVQEE
QAVDDDDDYREPESFPLPLFEGIREKADPDSMIGIENGFVKEREADLGDGRIGIVWRN
PDDPVYQPADKSMDSWFKGRTHQVLKTIYNKETGKLEGVMSFMEKKGPLTVTLAECEK
IALRFLFALFPNADQYFRIRYDEKDEEENAVAGFTFEAHCHGVPLRFGQIRICVSRQT
GYITVYMGPDIDPNKLATIDPVPAISVEQAKSIFWQHFKVELGWEREYGDDEEHSYRL
VYKPVYPHFIDAHTGEPVFSIW"
misc_feature 302075..302227
/gene="ycdB"
/locus_tag="BSU02790"
/note="Peptidase propeptide and YPEB domain; Region:
PepSY; pfam03413"
/db_xref="CDD:217543"
gene 302435..303796
/gene="ycdC"
/locus_tag="BSU02800"
/db_xref="GeneID:938376"
CDS 302435..303796
/gene="ycdC"
/locus_tag="BSU02800"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_388162.1"
/db_xref="GI:16077349"
/db_xref="GeneID:938376"
/translation="MVNKQLKKKAQEIGNVPTHYELEIEDYDQKQKKYGQAYFIWKDP
KDPEKHITVELRNDGALLTFSTTVHSETDKKLPDAELKLTALQFAAANHPGTFMNFHF
QGKEERGQHIRFVYTKMELGLPIPNSGFLIDMTRSGQIVHFLYYGEGHKAEVPTEFVA
KEKVVSHYLNTMSFELMYDVIDGEQEPRLVYEPILPGYSYPADVDEIVPDQHIADERI
ENTAPLPPLQNKEEVDIFALLGFTSDMQKVSERDFGEQIGSTWRRGAAPERKDLSIGS
YFETRNKNTIKMKTDKRTGKLKAALSFMDWRNNLQCSTEECQEIALQFLYALYPRAAE
FFRVNPVRIDERGRVRNHFSVWYKGVPLRFGAARIIVNPETGLIDAFMAPDIEPEQLE
AINHRPDVSAEEAKEAFLAAFDVKLEWQPDFTAGSDQHCKLVYKPVYPSYIDAHIRKK
KRL"
gene complement(303804..304307)
/gene="cwlK"
/locus_tag="BSU02810"
/db_xref="GeneID:938378"
CDS complement(303804..304307)
/gene="cwlK"
/locus_tag="BSU02810"
/EC_number="3.4.-.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 17588176; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="murein L,D:-endopeptidase"
/protein_id="NP_388163.1"
/db_xref="GI:16077350"
/db_xref="GeneID:938378"
/translation="MNLPAKTFVILCILFLLDLCFSYIRHEWHSQNALQDMPVPSDLH
PIVKQNADALKAAAANKGIDVVITEGFRSFKEQDELYKQGRTKKGNIVTYARGGESYH
NYGLAIDFALQKKDGSIIWDMEYDGNQNGKSDWLEVVEIAKTLGFEWGGDWKRFKDYP
HLEMIPN"
misc_feature complement(303861..304181)
/gene="cwlK"
/locus_tag="BSU02810"
/note="D-alanyl-D-alanine carboxypeptidase; Region: VanY;
pfam02557"
/db_xref="CDD:217104"
gene 304430..305551
/gene="rapJ"
/locus_tag="BSU02820"
/db_xref="GeneID:938373"
CDS 304430..305551
/gene="rapJ"
/locus_tag="BSU02820"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16816200; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="response regulator aspartate phosphatase"
/protein_id="NP_388164.1"
/db_xref="GI:16077351"
/db_xref="GeneID:938373"
/translation="MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDME
ENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFSDMLNEIESNQQKLTGLLEYYFY
YFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYM
IAAAYYNVGHCKYSLGDYKEAEGYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYD
KAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTECFDLLESRQLLADAE
DLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ"
misc_feature 304733..305056
/gene="rapJ"
/locus_tag="BSU02820"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(304736..304741,304748..304753,304856..304861,
304865..304870,304877..304882,304979..304984,
304991..304996,305003..305008)
/gene="rapJ"
/locus_tag="BSU02820"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature order(304745..304747,304781..304783,304793..304795,
304802..304804,304865..304867,304901..304903,
304913..304915,304922..304924,304988..304990,
305024..305026,305036..305038,305045..305047)
/gene="rapJ"
/locus_tag="BSU02820"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature 305045..305290
/gene="rapJ"
/locus_tag="BSU02820"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(305045..305047,305057..305059,305066..305068,
305108..305110,305144..305146,305156..305158,
305165..305167,305225..305227,305261..305263,
305273..305275,305282..305284)
/gene="rapJ"
/locus_tag="BSU02820"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature 305084..305290
/gene="rapJ"
/locus_tag="BSU02820"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature order(305099..305104,305108..305113,305120..305125,
305216..305221,305228..305233,305240..305245)
/gene="rapJ"
/locus_tag="BSU02820"
/note="binding surface"
/db_xref="CDD:238112"
gene 305658..306434
/gene="ycdF"
/locus_tag="BSU02830"
/db_xref="GeneID:938377"
CDS 305658..306434
/gene="ycdF"
/locus_tag="BSU02830"
/EC_number="1.-.-.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 10220166, 11948145; Product type pe:
enzyme"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_388165.1"
/db_xref="GI:16077352"
/db_xref="GeneID:938377"
/translation="MYKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSG
ADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMP
HEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYS
TSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAF
GKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTLYPSQLE"
misc_feature 305658..306422
/gene="ycdF"
/locus_tag="BSU02830"
/note="glucose-1-dehydrogenase; Provisional; Region:
PRK08936"
/db_xref="CDD:181585"
misc_feature 305670..306425
/gene="ycdF"
/locus_tag="BSU02830"
/note="glucose 1 dehydrogenase (GlcDH), classical (c)
SDRs; Region: GlcDH_SDR_c; cd05358"
/db_xref="CDD:187616"
misc_feature order(305697..305699,305703..305714,305772..305774,
305847..305858,305931..305939,306003..306005,
306087..306095,306132..306134,306144..306146,
306222..306233,306237..306248)
/gene="ycdF"
/locus_tag="BSU02830"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187616"
misc_feature order(305964..305966,305970..305972,305985..305987,
306012..306014,306033..306035,306102..306104,
306114..306116,306135..306140,306150..306152,
306159..306161,306171..306176,306183..306188)
/gene="ycdF"
/locus_tag="BSU02830"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187616"
misc_feature order(306006..306008,306093..306095,306132..306134,
306144..306146)
/gene="ycdF"
/locus_tag="BSU02830"
/note="active site"
/db_xref="CDD:187616"
gene 306459..308144
/gene="ycdG"
/locus_tag="BSU02840"
/db_xref="GeneID:938375"
CDS 306459..308144
/gene="ycdG"
/locus_tag="BSU02840"
/EC_number="3.2.-.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 11544224; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="glycosidase"
/protein_id="NP_388166.1"
/db_xref="GI:16077353"
/db_xref="GeneID:938375"
/translation="MKTDWWKDAVVYQIYPRSFQDSNGDGIGDLRGIISRLDYIKELG
ADVIWICPIYPSPNVDYGYDVTNHKAIMDSYGTMDDFHELLDQVHQRGLKLVMDFVLN
HTSVEHPWFKEAELDKNSKYRSYYYWRPGTKNGPPTDWLSNYGCPVWQYEEHTGEYYL
HMNAVKQADLNWENPEVRQAVYDMMKFWLDKGVDGLRIDQLHLISKKEYLPSYEDYIN
QQAEPKPFQPNGERIHDYLKEITDEVFSHYDVMSVGEVGSVTPEEGLKYTGTDKHELN
MIFHFQHMELDQQPGKEHWDLKPLELSDLKSVLTKWQKKLEHQGWNTLFWCNHDQPRI
VSRFGDDGEYRKASAKMLAAVIYFMKGTPYIYQGEEIGMTNAPFTRIEDYKDIQTINM
YHKRVFEKGYDPNDVMRSILAKSRDHARTPMQWNSGKNAGFTDGTPWLKVNPNFTAIN
VEEAQGDPDSVLNYYKKLISLRKQYADLMKGSFDLLLPDDPQLFVYMRENSKQQLLSV
NNFSKEQAVFQWPKNCGKAQASLLLSNYNNDDLDDEMVFRPYESRVYLLDKTN"
misc_feature 306471..308129
/gene="ycdG"
/locus_tag="BSU02840"
/note="alpha,alpha-phosphotrehalase; Region:
trehalose_treC; TIGR02403"
/db_xref="CDD:233851"
misc_feature 306477..307880
/gene="ycdG"
/locus_tag="BSU02840"
/note="Alpha amylase catalytic domain found in Sucrose
isomerases, oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase), dextran
glucosidase (also called glucan 1,6-alpha-glucosidase),
and related proteins; Region: AmyAc_SI_OligoGlu_DGase;
cd11333"
/db_xref="CDD:200472"
misc_feature order(306519..306521,306525..306527,306531..306533,
306543..306545)
/gene="ycdG"
/locus_tag="BSU02840"
/note="Ca binding site [ion binding]; other site"
/db_xref="CDD:200472"
misc_feature order(306636..306638,306645..306647,306756..306758,
306765..306767,306888..306890,306945..306947,
306957..306959,307053..307055,307221..307223,
307704..307706)
/gene="ycdG"
/locus_tag="BSU02840"
/note="active site"
/db_xref="CDD:200472"
misc_feature order(307053..307055,307221..307223,307446..307448)
/gene="ycdG"
/locus_tag="BSU02840"
/note="catalytic site [active]"
/db_xref="CDD:200472"
gene 308332..309291
/gene="adcA"
/locus_tag="BSU02850"
/db_xref="GeneID:938370"
CDS 308332..309291
/gene="adcA"
/locus_tag="BSU02850"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 12426338, 14730579, 9379902; Product type lp :
lipoprotein"
/codon_start=1
/transl_table=11
/product="Zn(II)-binding lipoprotein"
/protein_id="NP_388167.1"
/db_xref="GI:16077354"
/db_xref="GeneID:938370"
/translation="MFKKWSGLFVIAACFLLVAACGNSSTKGSADSKGDKLHVVTTFY
PMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETWVPS
AEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVLAQKEV
KNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYL
AKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEI
GAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSLLVKS"
misc_feature 308338..309279
/gene="adcA"
/locus_tag="BSU02850"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:223874"
misc_feature 308431..309276
/gene="adcA"
/locus_tag="BSU02850"
/note="Metal binding protein AcdA. These proteins have
been shown to function in the ABC uptake of Zn2+ and Mn2+
and in competence for genetic transformation and adhesion.
The AcdA proteins belong to the TroA superfamily of
helical backbone metal receptor...; Region: AdcA; cd01017"
/db_xref="CDD:238499"
misc_feature order(308542..308544,308773..308775,308965..308967,
309190..309192)
/gene="adcA"
/locus_tag="BSU02850"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238499"
gene 309347..310042
/gene="adcC"
/locus_tag="BSU02860"
/db_xref="GeneID:938374"
CDS 309347..310042
/gene="adcC"
/locus_tag="BSU02860"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 9379902, 9811636; Product type t : transporter"
/codon_start=1
/transl_table=11
/product="Zn(II) transporter ATP-binding protein"
/protein_id="NP_388168.1"
/db_xref="GI:16077355"
/db_xref="GeneID:938374"
/translation="MNLVSLKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKST
LIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYT
KGKWFKRLNEEDHLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLM
LDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQFLDKVIRLERGEKGG
WKCLTWNSCDELF"
misc_feature 309347..310039
/gene="adcC"
/locus_tag="BSU02860"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:224046"
misc_feature 309359..309988
/gene="adcC"
/locus_tag="BSU02860"
/note="ATP-binding cassette domain of the metal-type
transporters; Region: ABC_Metallic_Cations; cd03235"
/db_xref="CDD:213202"
gene 310000..310842
/gene="adcB"
/locus_tag="BSU02870"
/db_xref="GeneID:938367"
CDS 310000..310842
/gene="adcB"
/locus_tag="BSU02870"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 15849754, 16850406, 9379902, 9811636; Product
type t: transporter"
/codon_start=1
/transl_table=11
/product="high affinity Zn(II) ABC transporter permease"
/protein_id="NP_388169.1"
/db_xref="GI:16077356"
/db_xref="GeneID:938367"
/translation="MEMFDLEFMRRAFLAGGMIAVMAPILGVYLVLRRQALMADTLSH
ISLSGVAIGFFLSTNITAASIVVVTIGAIGIEYMRRAYRTYSEVSIAILMAAGLSFAM
FLISLSKGTANMSIDQYLFGSLVTVNQQQVYIISIITLLILLYFIVLRRPLYLLTFDE
ATAKTSGINTNVLSLSFSIVTGLAISVIIPIIGVLLVSALLVLPAAFAIRIAKGFNMV
FITAILISLFSVFTGLTSSYQLGTPPGPSITLLLIVLLLIGFAVQGVWTFIKKEAQRK
KRSR"
misc_feature 310000..310740
/gene="adcB"
/locus_tag="BSU02870"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature 310024..310740
/gene="adcB"
/locus_tag="BSU02870"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(310078..310080,310090..310098,310438..310443,
310447..310455,310459..310464,310468..310485,
310489..310497,310621..310623,310642..310644)
/gene="adcB"
/locus_tag="BSU02870"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(310093..310095,310099..310101,310114..310116,
310255..310257,310261..310266,310273..310278,
310285..310290,310297..310299,310306..310311,
310315..310317,310348..310353,310360..310362,
310588..310590,310735..310737)
/gene="adcB"
/locus_tag="BSU02870"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(310315..310317,310390..310392,310564..310566,
310576..310578,310711..310713,310726..310728)
/gene="adcB"
/locus_tag="BSU02870"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(310880..311875)
/gene="yceB"
/locus_tag="BSU02880"
/db_xref="GeneID:938371"
CDS complement(310880..311875)
/gene="yceB"
/locus_tag="BSU02880"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16428414; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="monooxygenase"
/protein_id="NP_388170.2"
/db_xref="GI:255767077"
/db_xref="GeneID:938371"
/translation="MIHLSILDQAPVSKGESPVTTLQHSVELAQLSEQWGYKRYWFAE
HHSTKGLASTAPEIMIARIAAQTNTIRVGSGGVLLPQYSPFKVAETFRQLEALYPNRI
DLGVGRSPGGTTKTRLALTDGVKKSLTEFNRQLQDVSYFLTDSLPPDHPYAGIKAAPL
IGTAPELWVLGLGENSARRAAHQGIGYVFGHFINPERGENAFRIYRESFRPSAHFSNP
SALFTIFVICAKTDEEAEELALSQDLWLLRVGKGLDSRVPSIEEAKAHPYTASDKKLI
EENRKRMVIGSPTTVKQQLLDLTGCYETNEIMVLCNVFDFEAKKESYERLAELFL"
misc_feature complement(310889..311866)
/gene="yceB"
/locus_tag="BSU02880"
/note="luciferase family oxidoreductase, group 1; Region:
oxido_grp_1; TIGR03558"
/db_xref="CDD:234256"
misc_feature complement(<311552..311857)
/gene="yceB"
/locus_tag="BSU02880"
/note="probable oxidoreductase, LLM family; Region:
LLM_2I7G; TIGR03858"
/db_xref="CDD:234374"
misc_feature complement(311234..>311377)
/gene="yceB"
/locus_tag="BSU02880"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cd00347"
/db_xref="CDD:238209"
gene 312159..312758
/gene="yceC"
/locus_tag="BSU02890"
/db_xref="GeneID:938372"
CDS 312159..312758
/gene="yceC"
/locus_tag="BSU02890"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="stress adaptation protein"
/protein_id="NP_388171.1"
/db_xref="GI:16077358"
/db_xref="GeneID:938372"
/translation="MAISLEKGQRIDLTKGKAGLSKLMVGLGWDPVSSGGGFFSKLLG
GGGPNIDCDASVLMLENGKFTDKKNLIYFGNLKSRCGGVQHTGDNLTGDGAGDDEQIM
IDLDKVPGNIDKLVFVVNIYDCVRRKQDFGMIQNAFIRVVDQSNHEEMLKYNLRDNYA
GRTSLITAEIYRSGSEWKFAAVGEGTNDTRLEDIISRYV"
misc_feature 312162..312755
/gene="yceC"
/locus_tag="BSU02890"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:225192"
misc_feature 312216..312752
/gene="yceC"
/locus_tag="BSU02890"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(312309..312311,312315..312317,312453..312455)
/gene="yceC"
/locus_tag="BSU02890"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 312780..313361
/gene="yceD"
/locus_tag="BSU02900"
/db_xref="GeneID:938364"
CDS 312780..313361
/gene="yceD"
/locus_tag="BSU02900"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="stress adaptation protein"
/protein_id="NP_388172.1"
/db_xref="GI:16077359"
/db_xref="GeneID:938364"
/translation="MTISLAKGQKVDLTKTNPGLSKVVVGLGWDTNKYDGGHDFDLDS
SVFLLDAAGKCASPNDFIFYNQLEGGNGSVVHSGDNLTGAGEGDDENVKVNLSAVPAN
IDKISFVITIHDAEARSQNFGQVSNAFVRIVNEETNEELIRYDLAEDFSIETAIIAGE
LYRHNGEWKFSAIGSGYQGGLARIATDYGLQVG"
misc_feature 312786..313346
/gene="yceD"
/locus_tag="BSU02900"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:225192"
misc_feature 312837..313346
/gene="yceD"
/locus_tag="BSU02900"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(312894..312896,312900..312902,313047..313049)
/gene="yceD"
/locus_tag="BSU02900"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 313396..313974
/gene="yceE"
/locus_tag="BSU02910"
/db_xref="GeneID:938368"
CDS 313396..313974
/gene="yceE"
/locus_tag="BSU02910"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="stress adaptation protein"
/protein_id="NP_388173.1"
/db_xref="GI:16077360"
/db_xref="GeneID:938368"
/translation="MAIQLSKGQRIDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDA
SAFLVDAHDNCVNDLDFVFYNNLEHPSGGVIHTGDNRTGEGDGDDEQIIVDFSKIPAH
IEKIGITVTIHDAEARSQNFGQVSNAFVRVVDEETQNELLRFDLGEDFSIETAVVVCE
LYRHGGEWKFNAIGSGFSGGLAALCRNYGLQV"
misc_feature 313399..313962
/gene="yceE"
/locus_tag="BSU02910"
/note="Uncharacterized proteins involved in stress
response, homologs of TerZ and putative cAMP-binding
protein CABP1 [Signal transduction mechanisms]; Region:
TerZ; COG2310"
/db_xref="CDD:225192"
misc_feature 313453..313962
/gene="yceE"
/locus_tag="BSU02910"
/note="Uncharacterized proteins involved in stress
response, similar to tellurium resistance terD; Region:
TerD_like; cd06974"
/db_xref="CDD:132992"
misc_feature order(313516..313518,313522..313524,313663..313665)
/gene="yceE"
/locus_tag="BSU02910"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:132992"
gene 314025..314798
/gene="yceF"
/locus_tag="BSU02920"
/db_xref="GeneID:938369"
CDS 314025..314798
/gene="yceF"
/locus_tag="BSU02920"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="stress adaptation transporter"
/protein_id="NP_388174.1"
/db_xref="GI:16077361"
/db_xref="GeneID:938369"
/translation="MDFLHHILSTYASFFDWKMWGEVLTDPVSWGLIGSLVVLEGLLS
ADNALVLAVMVKHLPEKQRKKALTYGLFGAYIFRFIFIGLGMLLIKFWWIKVLGALYL
AWLVIKHFWIGEKEEEADGMKKNSWMVRTFGIFWATVISVELMDLAFSVDSILAAFAV
SEKVWVLLIGGMLGILMMRTVAKVFLVLIDKIPELENTAFVLIGIIALKMAGSAFHYE
MPHSVFFIIIIAAFAVTLIIHYINKQKQVREQTAASKEE"
misc_feature 314133..314750
/gene="yceF"
/locus_tag="BSU02920"
/note="integral membrane protein, YkoY family; Region:
R_switched_YkoY; TIGR03716"
/db_xref="CDD:234326"
gene 314883..316496
/gene="yceG"
/locus_tag="BSU02930"
/db_xref="GeneID:938361"
CDS 314883..316496
/gene="yceG"
/locus_tag="BSU02930"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388175.1"
/db_xref="GI:16077362"
/db_xref="GeneID:938361"
/translation="MRQEELTIHKALPADGDWKSLLFQPLPERDHYETAQGLSFSRLA
GQILGTPIDETDYYNELYELSVNDRITILSETLDKTIEPETFQKLQHIHSINQKEKGL
SVSRFVAFLDGEKLIAKHSNPLMHRHLRKALMTLLHTFADSHEKGLNHPDFRRVLLDV
SKFSLNHLNPWLEKTDIEREMPKVVWYGDATKSQLYFLYYLMLVGCDVLLFHPAGTDQ
LALVDPKQELGFTEKLPDVSELQPFPKEKPDRKSTVAYRSTKEIEHVLNHEESMLYKP
WQFRDHTPVSVTLKTTYDELFLITKERAFIRPNFKADKHSIEIPNVFAKIMGVSKDNK
EYWNRLHTLADYQETEMVRSFPFTEEIKSNYQFHYSHALDQEGNIDPDKLMASNVWQY
KQLPAGVQTAIAKTISRMCRYPRLKALHQEQVKDVQIYLFKQTTNLPANLLKLIQMFD
YAQTVPKLVLYHTEMSGGLTRSDAAALLFLNEIGIDIIIYNPPGHQDIEQFIEEDQYD
IHWLDDMVFQQDYKEPSLVKRLFRTITQK"
misc_feature 314985..316475
/gene="yceG"
/locus_tag="BSU02930"
/note="Domain of unknown function (DUF4356); Region:
DUF4356; pfam14266"
/db_xref="CDD:222637"
gene 316512..317603
/gene="yceH"
/locus_tag="BSU02940"
/db_xref="GeneID:938366"
CDS 316512..317603
/gene="yceH"
/locus_tag="BSU02940"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388176.1"
/db_xref="GI:16077363"
/db_xref="GeneID:938366"
/translation="MTTENQNPLVLDKNEEISQQKADDIRLQLRQEPEVKRLAQQIDV
KNQMELLEYGKEPAVEISKFSDRILGMMKTTSVTDSGTMLTQLGKIMDRFDKNDFDEP
KGLMAKIFKRGGSMIEKIFKKYQTLGGEIEKIHVEISKYKDEMTKTNYTLDEMYENNI
KYYMELEKYVVAGQMKLEEMQSILPSYEEKAASGNQLAQMQLDTLRNGIQALEERVYD
LDMARMVALQTAPQIRLLQRGNAKLIGKINSAFIITIPIFKNGIIQAVTVKRQKLVAD
SMSELDRRTNEMLKRNAENISSQSVEIARMAGRPSIDIETIESSWNTIVSGMQETKQI
EEENKRLREDGARRIAQLQDNIKKAALQQ"
misc_feature 316536..317600
/gene="yceH"
/locus_tag="BSU02940"
/note="Uncharacterized protein involved in tellurite
resistance [Inorganic ion transport and metabolism];
Region: TelA; COG3853"
/db_xref="CDD:226371"
gene 317725..318927
/gene="yceI"
/locus_tag="BSU02950"
/db_xref="GeneID:938365"
CDS 317725..318927
/gene="yceI"
/locus_tag="BSU02950"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="NP_388177.1"
/db_xref="GI:16077364"
/db_xref="GeneID:938365"
/translation="MGKQQPISQRKLLGVAGLGWLFDAMDVGILSFIIAALHVEWNLS
PEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCFSIGSGISAFVTSLSAF
LILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIP
SFGWQAALLLTALTAFYALYLRTSLPDSPKYESLSAKKRSMWENVKSVWARQYIRPTV
MLSIVWFCVVFSYYGMFLWLPSVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEK
AGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLSFFNLGAWGVLYAYTPEQYPT
AIRATGSGTTAAFGRIGGIFGPLLVGTLAARHISFSVIFSIFCIAILLAVACILIMGK
ETKQTELE"
misc_feature 317734..318813
/gene="yceI"
/locus_tag="BSU02950"
/note="benzoate transport; Region: 2A0115; TIGR00895"
/db_xref="CDD:233175"
misc_feature 317761..318813
/gene="yceI"
/locus_tag="BSU02950"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(317803..317805,317812..317820,317824..317829,
317878..317880,317887..317892,317899..317901,
317911..317916,317920..317925,318061..318066,
318073..318078,318085..318090,318097..318099,
318133..318138,318145..318150,318166..318168,
318406..318408,318415..318420,318427..318432,
318439..318441,318478..318480,318490..318492,
318502..318504,318511..318513,318523..318525,
318664..318666,318673..318678,318685..318687,
318697..318702,318709..318711,318742..318747,
318754..318759,318766..318771,318778..318780)
/gene="yceI"
/locus_tag="BSU02950"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(319180..320352)
/gene="yceJ"
/locus_tag="BSU02960"
/db_xref="GeneID:938363"
CDS complement(319180..320352)
/gene="yceJ"
/locus_tag="BSU02960"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="efflux transporter"
/protein_id="NP_388178.1"
/db_xref="GI:16077365"
/db_xref="GeneID:938363"
/translation="MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVS
AYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVSTFLCGIAPSFAAMCLFRFAAGV
SAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNF
ASFSFLGTWLSADYHLTVSQIGAAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLL
MGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAPNARGTIASLSNAAM
YAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL"
misc_feature complement(319198..320346)
/gene="yceJ"
/locus_tag="BSU02960"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:225371"
misc_feature complement(319252..320343)
/gene="yceJ"
/locus_tag="BSU02960"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(319339..319341,319348..319353,
319360..319365,319372..319377,319405..319407,
319414..319419,319429..319431,319438..319443,
319450..319452,319591..319593,319603..319605,
319612..319614,319624..319626,319636..319638,
319678..319680,319687..319692,319699..319704,
319711..319713,319936..319938,319954..319959,
319966..319971,320005..320007,320014..320019,
320026..320031,320038..320043,320179..320184,
320188..320193,320203..320205,320212..320217,
320224..320226,320275..320280,320284..320292,
320299..320301))
/gene="yceJ"
/locus_tag="BSU02960"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(320421..320723)
/gene="yceK"
/locus_tag="BSU02970"
/db_xref="GeneID:938357"
CDS complement(320421..320723)
/gene="yceK"
/locus_tag="BSU02970"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="NP_388179.1"
/db_xref="GI:16077366"
/db_xref="GeneID:938357"
/translation="MYYSFMTMKQSDDQIRAQIFKALSDESRLAIIRTLYVSGKELSC
GEVGEKCNIVKTTASYHFKTLREAGLTATRKDSRTKYVSLREDTFQTYLPGFLETL"
misc_feature complement(320463..320666)
/gene="yceK"
/locus_tag="BSU02970"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature complement(order(320517..320519,320613..320615,
320622..320627,320634..320639,320646..320648,
320655..320657,320661..320666))
/gene="yceK"
/locus_tag="BSU02970"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature complement(order(320478..320486,320499..320507,
320523..320528,320532..320537,320544..320549,
320553..320564,320589..320597,320640..320648,
320658..320663))
/gene="yceK"
/locus_tag="BSU02970"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature complement(order(320586..320588,320595..320597))
/gene="yceK"
/locus_tag="BSU02970"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene 321013..322269
/gene="opuAA"
/locus_tag="BSU02980"
/db_xref="GeneID:938362"
CDS 321013..322269
/gene="opuAA"
/locus_tag="BSU02980"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16225868, 16645306,
7622480; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="glycine/betaine ABC transporter ATP-binding
protein"
/protein_id="NP_388180.2"
/db_xref="GI:255767078"
/db_xref="GeneID:938362"
/translation="MSVDEKPIKIKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATG
STVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSK
DQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKQERQQKALESLKLVGLE
GFEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDN
VGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMNPSNEYVEKFVEDVDLS
KVLTAGHIMKRAETVRIDKGPRVALTLMKNLGISSIYAVDKQKKLLGVIYASDAKKAA
ESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANIPIAVVDEKQRMKGIVVRGALIGA
LAGNNEYINAEGTNEQTQDPSAQEVK"
misc_feature 321028..322203
/gene="opuAA"
/locus_tag="BSU02980"
/note="ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism];
Region: ProV; COG4175"
/db_xref="CDD:226643"
misc_feature 321040..321846
/gene="opuAA"
/locus_tag="BSU02980"
/note="ATP-binding cassette domain of the osmoprotectant
proline/glycine betaine uptake system; Region:
ABC_Pro_Gly_Betaine; cd03294"
/db_xref="CDD:213261"
misc_feature 321208..321231
/gene="opuAA"
/locus_tag="BSU02980"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213261"
misc_feature order(321217..321222,321226..321234,321364..321366,
321592..321597,321694..321696)
/gene="opuAA"
/locus_tag="BSU02980"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213261"
misc_feature 321355..321366
/gene="opuAA"
/locus_tag="BSU02980"
/note="Q-loop/lid; other site"
/db_xref="CDD:213261"
misc_feature 321520..321549
/gene="opuAA"
/locus_tag="BSU02980"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213261"
misc_feature 321580..321597
/gene="opuAA"
/locus_tag="BSU02980"
/note="Walker B; other site"
/db_xref="CDD:213261"
misc_feature 321604..321615
/gene="opuAA"
/locus_tag="BSU02980"
/note="D-loop; other site"
/db_xref="CDD:213261"
misc_feature 321682..321702
/gene="opuAA"
/locus_tag="BSU02980"
/note="H-loop/switch region; other site"
/db_xref="CDD:213261"
misc_feature 321880..322188
/gene="opuAA"
/locus_tag="BSU02980"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cl15354"
/db_xref="CDD:246936"
gene 322271..323119
/gene="opuAB"
/locus_tag="BSU02990"
/db_xref="GeneID:938360"
CDS 322271..323119
/gene="opuAB"
/locus_tag="BSU02990"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15849754, 16225868,
16645306, 16850406, 8752321; Product type t : transporter"
/codon_start=1
/transl_table=11
/product="glycine betaine ABC transporter permease"
/protein_id="NP_388181.1"
/db_xref="GI:16077368"
/db_xref="GeneID:938360"
/translation="MDRLPRIPLADIIDRFVDWITMTFGGFFDGIANGLAAFVNGIVT
GLGFIPSILLTIIFAALAWWISTRGIALFTLIGFLLIDYLGYWDPMLQTLALVLTSVI
ISIVVGVPIGIWASQKETVRRIVTPILDLMQTMPAFVYLLPAIFFFNIGVVPGVVASV
IFAMPPTIRMTVLGIKQVPADLIEATEAFGSTTAQRLFKVQLPLATKTILAGINQSIM
LALSMVVIAAMVGAPGLGSEVYSAVTQLKTGVGVEAGIAIVIVAITLDRITQNIKVKK
KSRGNA"
misc_feature 322289..323113
/gene="opuAB"
/locus_tag="BSU02990"
/note="glycine betaine transporter membrane protein;
Provisional; Region: PRK10952"
/db_xref="CDD:236805"
misc_feature 322631..322978
/gene="opuAB"
/locus_tag="BSU02990"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(322643..322654,322658..322687,322694..322699,
322703..322705,322751..322756,322760..322762,
322766..322768,322775..322780,322784..322786,
322796..322801,322808..322810,322859..322861,
322901..322906,322913..322915,322934..322945,
322952..322957)
/gene="opuAB"
/locus_tag="BSU02990"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(322661..322705,322934..322951)
/gene="opuAB"
/locus_tag="BSU02990"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(322703..322705,322736..322738,322952..322954)
/gene="opuAB"
/locus_tag="BSU02990"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(322811..322849,322865..322870,322880..322882)
/gene="opuAB"
/locus_tag="BSU02990"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 323119..324000
/gene="opuAC"
/locus_tag="BSU03000"
/db_xref="GeneID:938354"
CDS 323119..324000
/gene="opuAC"
/locus_tag="BSU03000"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 16225868, 16645306,
7622480; Product type lp: lipoprotein"
/codon_start=1
/transl_table=11
/product="glycine betaine ABC transporter
substrate-binding protein"
/protein_id="NP_388182.1"
/db_xref="GI:16077369"
/db_xref="GeneID:938354"
/translation="MLKKIIGIGVSAMLALSLAACGSENDENASAAEQVNKTIIGIDP
GSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRY
KLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVEEGE
KPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGY
EVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGL
VVPQYMKNVNSIEDLKK"
misc_feature 323119..323994
/gene="opuAC"
/locus_tag="BSU03000"
/note="ABC-type proline/glycine betaine transport systems,
periplasmic components [Amino acid transport and
metabolism]; Region: ProX; COG2113"
/db_xref="CDD:225024"
misc_feature <323200..323634
/gene="opuAC"
/locus_tag="BSU03000"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:217871"
misc_feature 323686..>323997
/gene="opuAC"
/locus_tag="BSU03000"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:217871"
gene complement(324038..325189)
/gene="amhX"
/locus_tag="BSU03010"
/db_xref="GeneID:938351"
CDS complement(324038..325189)
/gene="amhX"
/locus_tag="BSU03010"
/EC_number="3.5.1.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 8768514; Product type e :
enzyme"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="NP_388183.2"
/db_xref="GI:255767079"
/db_xref="GeneID:938351"
/translation="MQKLSEEMKQTIMDIFEHLHANPEVSWKEYETTSFLKQKLEDLG
CRTRTFSDCTGVVGEIGSGSPVVAVRADIDALWQEVNGTFRANHSCGHDSHMTMALGT
LMLLKKQPELPKGTIRFIFQPAEEKGGGALKMIEEGVLDDIDYLYGVHVRPIQETQNG
RCAPSILHGSSQHIEGTIIGEEAHGARPHLGKNSIEIAAFLVHKLGLIHIDPQIPHTV
KMTKLQAGGESSNIIPGKASFSLDLRAQTNEAMEALIAETERACEAAAAAFGAKIELH
KEHSLPAATQNKEAEAIMAEAITEIIGAERLDDPLVTTGGEDFHFYAVKVPNLKTTML
GLGCGLQPGLHHPHMTFDRNAMFTGIHILANAVLKTFQKAESLAAANAS"
misc_feature complement(324083..325171)
/gene="amhX"
/locus_tag="BSU03010"
/note="M20 Peptidase Aminoacylase 1 amhX_like subfamily;
Region: M20_Acy1_amhX_like; cd08018"
/db_xref="CDD:193565"
misc_feature complement(324113..325156)
/gene="amhX"
/locus_tag="BSU03010"
/note="amidohydrolase; Region: amidohydrolases; TIGR01891"
/db_xref="CDD:233621"
misc_feature complement(order(324155..324157,324740..324742,
324812..324814,324914..324916,324920..324922))
/gene="amhX"
/locus_tag="BSU03010"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193565"
misc_feature complement(order(324464..324472,324488..324490,
324494..324499,324512..324532,324572..324574,
324581..324583,324590..324592,324602..324607,
324671..324673))
/gene="amhX"
/locus_tag="BSU03010"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193565"
gene 325339..326772
/gene="ycgA"
/locus_tag="BSU03020"
/db_xref="GeneID:938359"
CDS 325339..326772
/gene="ycgA"
/locus_tag="BSU03020"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pm:
membrane component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388184.2"
/db_xref="GI:255767080"
/db_xref="GeneID:938359"
/translation="MSMPAAETQPKKKRMTFKMPDAYVLLFMIAFICAIASYIVPAGE
FDRVTKGDVTTAVPGSYHSIEQSPVRLISFFTSLQDGMVGSAPIIFLILFTGGTIAIL
EKTGAINGLIYNVISKFRTKQLLFICIVGALFSILGTTGIVVNSVIGFIPIGLIVARS
LKWDAVAGAAVIYIGCYAGFNSTILSPSPLGLSQSIAELPLFSGIGLRVVIYICFLLS
SIIYIYLYTRKLKKSKDASVLGTDWFPAAGMGEAGKEEDQSVPFTVRHKLILAVAGLS
LVGFLYGALKLGWSDSQMAATFIFISVLAGLIGGLAANDIAKTFITGCQSLVYGALIV
GMARSISVILENGKLLDTVVNALASLLDGFSPIAGAIGMYIASALLHFLISSGSGEAV
VFIPILAPLADLMGITRQVAVEAVMLGEGVVNCVNPTSGVLMAVLAASGIPYVKWLRF
MVPLALIWFLIGLVFIVIGVMINWGPF"
misc_feature 325366..326754
/gene="ycgA"
/locus_tag="BSU03020"
/note="Predicted membrane protein [Function unknown];
Region: COG1288"
/db_xref="CDD:224207"
misc_feature 325393..326748
/gene="ycgA"
/locus_tag="BSU03020"
/note="C4-dicarboxylate anaerobic carrier; Region: DcuC;
pfam03606"
/db_xref="CDD:217636"
gene 326888..327469
/gene="ycgB"
/locus_tag="BSU03030"
/db_xref="GeneID:938355"
CDS 326888..327469
/gene="ycgB"
/locus_tag="BSU03030"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pm:
membrane component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388185.2"
/db_xref="GI:255767081"
/db_xref="GeneID:938355"
/translation="MNNLRNRLSGVNGKNKRVKEKEQKIWSEIGMIAGAFALLDVIIR
GIMFEFPFKEWAASLVFLFIIILYYCIRAAASGMLMPRIDTKEELQKRVKQQRIESIA
VAFAVVVLTMYDRGIPHTFFAWLKMILLFIVCGGVLFLLRYVIVKLAYRRAVKEEIKK
KSSFLFGKRGKRSQFRAAFFIGTLICIHSAKLF"
gene 327618..329597
/gene="amyE"
/locus_tag="BSU03040"
/db_xref="GeneID:938356"
CDS 327618..329597
/gene="amyE"
/locus_tag="BSU03040"
/EC_number="3.2.1.1"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 3117969, 9353930; Product
type e: enzyme"
/codon_start=1
/transl_table=11
/product="alpha-amylase"
/protein_id="NP_388186.2"
/db_xref="GI:255767082"
/db_xref="GeneID:938356"
/translation="MFAKRFKTSLLPLFAGFLLLFHLVLAGPAAASAETANKSNELTA
PSIKSGTILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWL
YQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTSDYAAISNEVKSIPN
WTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLDRALNDGADGFRFDA
AKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSASRDAAYANYMDVTASNYGHSI
RSALKNRNLGVSNISHYASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVI
ASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEE
LSNPNGNNQIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGK
LTGTINARSVAVLYPDDIAKAPHVFLENYKTGVTHSFNDQLTITLRADANTTKAVYQI
NNGPETAFKDGDQFTIGKGDPFGKTYTIMLKGTNSDGVTRTEKYSFVKRDPASAKTIG
YQNPNHWSQVNAYIYKHDGSRVIELTGSWPGKPMTKNADGIYTLTLPADTDTTNAKVI
FNNGSAQVPGQNQPGFDYVLNGLYNDSGLSGSLPH"
misc_feature 327765..328796
/gene="amyE"
/locus_tag="BSU03040"
/note="Alpha amylase catalytic domain found in bacterial
Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase); Region:
AmyAc_bac1_AmyA; cd11315"
/db_xref="CDD:200454"
misc_feature 327789..>328331
/gene="amyE"
/locus_tag="BSU03040"
/note="Glycosidases [Carbohydrate transport and
metabolism]; Region: AmyA; COG0366"
/db_xref="CDD:223443"
misc_feature order(327912..327917,327924..327929,328044..328046,
328053..328055,328128..328130,328260..328262,
328266..328271,328275..328280,328362..328364,
328368..328370,328374..328376,328542..328547,
328557..328559)
/gene="amyE"
/locus_tag="BSU03040"
/note="active site"
/db_xref="CDD:200454"
misc_feature order(328041..328043,328176..328178,328251..328253)
/gene="amyE"
/locus_tag="BSU03040"
/note="Ca binding site [ion binding]; other site"
/db_xref="CDD:200454"
misc_feature order(328266..328268,328362..328364,328545..328547)
/gene="amyE"
/locus_tag="BSU03040"
/note="catalytic site [active]"
/db_xref="CDD:200454"
misc_feature 328797..329018
/gene="amyE"
/locus_tag="BSU03040"
/note="Aamy_C domain; Region: Aamy_C; smart00632"
/db_xref="CDD:214749"
gene 329774..330739
/gene="ldh"
/locus_tag="BSU03050"
/db_xref="GeneID:938348"
CDS 329774..330739
/gene="ldh"
/locus_tag="BSU03050"
/EC_number="1.1.1.27"
/function="16.10: Respire"
/inference="ab initio prediction:AMIGene:2.0"
/note="Converts (S)-lactate and NAD(+) to pyruvate and
NADH"
/codon_start=1
/transl_table=11
/product="L-lactate dehydrogenase"
/protein_id="NP_388187.2"
/db_xref="GI:255767083"
/db_xref="GeneID:938348"
/translation="MMNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKA
MGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKI
FKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFML
SEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDD
VKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYIGVP
AVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPHFAEQKVN"
misc_feature 329774..330721
/gene="ldh"
/locus_tag="BSU03050"
/note="L-lactate dehydrogenase; Reviewed; Region: ldh;
PRK00066"
/db_xref="CDD:178836"
misc_feature 329792..330709
/gene="ldh"
/locus_tag="BSU03050"
/note="L-2-hydroxyisocapronate dehydrogenases and some
bacterial L-lactate dehydrogenases; Region: HicDH_like;
cd05291"
/db_xref="CDD:133427"
misc_feature order(329792..329794,329867..329869,329954..329956,
330266..330268,330272..330274,330281..330283,
330338..330340,330353..330358,330518..330532,
330536..330538,330614..330616,330638..330643)
/gene="ldh"
/locus_tag="BSU03050"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:133427"
misc_feature order(329816..329824,329885..329890,330014..330025,
330137..330145,330212..330214,330308..330310)
/gene="ldh"
/locus_tag="BSU03050"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133427"
misc_feature order(329828..329833,329840..329842,329852..329857,
329912..329914,329918..329932,329939..329944,
330233..330238,330242..330244,330278..330280,
330458..330463,330473..330481,330488..330490,
330500..330502)
/gene="ldh"
/locus_tag="BSU03050"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133427"
misc_feature order(330047..330049,330143..330145,330236..330238,
330308..330310,330440..330442,330470..330472)
/gene="ldh"
/locus_tag="BSU03050"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133427"
gene 330771..332396
/gene="lctP"
/locus_tag="BSU03060"
/db_xref="GeneID:938353"
CDS 330771..332396
/gene="lctP"
/locus_tag="BSU03060"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10809684, 15849754,
16428414, 16850406; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="L-lactate permease"
/protein_id="NP_388188.2"
/db_xref="GI:255767084"
/db_xref="GeneID:938353"
/translation="MWEQLYDPFGNEYVSALVALTPILFFLLALTVLKMKGILAAFLT
LAVSFFVSVWAFHMPVEKAISSVLLGIGSGLWPIGYIVLMAVWLYKIAVKTGKFTIIR
SSIAGISPDQRLQLLLIGFCFNAFLEGAAGFGVPIAISAALLVELGFKPLKAAALCLI
ANAASGAFGAIGIPVITGAQIGDLSALELSRTLMWTLPMISFLIPFLLVFLLDRMKGI
KQTWPALLVVSGGYTAVQTLTMAVLGPELANILAALFSMGGLALFLRKWQPKEIYREE
GAGDAGEKKAYRAADIAKAWSPFYILTAAITIWSLPAFKALFQEGGLLYQSTLLFKMP
FLHQQIMKMPPIAPSAMPLDAVFKVDLLSATGTAILAAVIVTGLFSKKFSSRDAFASL
KETGKELWVPIMTICFVMGFANLANFAGLSSSIGLALAKTGDLFPFVSPVLGWIGVFI
TGSVVSNNALFGHLQVVTGAQIGAGSDLLLAANTAGGVMAKLVSPQSIAIAAAAVGQT
GKESKLFKRTVAYSLILLLIICIWTFILARLGV"
misc_feature 330801..332393
/gene="lctP"
/locus_tag="BSU03060"
/note="L-lactate permease [Energy production and
conversion]; Region: LldP; COG1620"
/db_xref="CDD:224535"
misc_feature 330810..332378
/gene="lctP"
/locus_tag="BSU03060"
/note="L-lactate permease; Region: Lactate_perm;
pfam02652"
/db_xref="CDD:145679"
gene complement(332441..333979)
/gene="mdr"
/locus_tag="BSU03070"
/db_xref="GeneID:938345"
CDS complement(332441..333979)
/gene="mdr"
/locus_tag="BSU03070"
/function="16.1: Circulate"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15489457, 15849754,
16850406, 9023234; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="multidrug-efflux transporter"
/protein_id="NP_388189.2"
/db_xref="GI:255767085"
/db_xref="GeneID:938345"
/translation="MDTTTAKQASTKFVVLGLLLGILMSAMDNTIVATAMGNIVADLG
SFDKFAWVTASYMVAVMAGMPIYGKLSDMYGRKRFFLFGLIFFLIGSALCGIAQTMNQ
LIIFRAIQGIGGGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT
DSISWHWVFYINVPIGALSLFFIIRYYKESLEHRKQKIDWGGAITLVVSIVCLMFALE
LGGKTYDWNSIQIIGLFIVFAVFFIAFFIVERKAEEPIISFWMFKNRLFATAQILAFL
YGGTFIILAVFIPIFVQAVYGSSATSAGFILTPMMIGSVIGSMIGGIFQTKASFRNLM
LISVIAFFIGMLLLSNMTPDTARVWLTVFMMISGFGVGFNFSLLPAASMNDLEPRFRG
TANSTNSFLRSFGMTLGVTIFGTVQTNVFTNKLNDAFSGMKGSAGSGAAQNIGDPQEI
FQAGTRSQIPDAILNRIIDAMSSSITYVFLLALIPIVLAAVTILFMGKARVKTTAEMT
KKAN"
misc_feature complement(<333416..333937)
/gene="mdr"
/locus_tag="BSU03070"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(332753..333928)
/gene="mdr"
/locus_tag="BSU03070"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:219516"
misc_feature complement(order(333533..333535,333551..333556,
333563..333568,333602..333604,333611..333616,
333623..333628,333635..333640,333776..333781,
333785..333790,333800..333802,333809..333814,
333821..333823,333869..333874,333878..333886,
333893..333895))
/gene="mdr"
/locus_tag="BSU03070"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(332720..>333205)
/gene="mdr"
/locus_tag="BSU03070"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 334092..334556
/gene="ycgE"
/locus_tag="BSU03080"
/db_xref="GeneID:938352"
CDS 334092..334556
/gene="ycgE"
/locus_tag="BSU03080"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_388190.2"
/db_xref="GI:255767086"
/db_xref="GeneID:938352"
/translation="MSTRNSRSELEKTAVQLFRKLGTRTVLFHQAAAQALGLFPTDLK
SADILNEAGPMTAGELGKKTGLSTGSVTALVDRLEKAGYVAREKDPNDRRRVVIVPLT
ASKKHIKDLFRPLSESTMDLCREYTEEELELIFSFVGKAADIMEEELERLKQ"
misc_feature 334191..334484
/gene="ycgE"
/locus_tag="BSU03080"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 334209..>334364
/gene="ycgE"
/locus_tag="BSU03080"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature order(334209..334217,334257..334265,334290..334301,
334305..334310,334317..334322,334326..334331,
334347..334355)
/gene="ycgE"
/locus_tag="BSU03080"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature order(334257..334259,334266..334268)
/gene="ycgE"
/locus_tag="BSU03080"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene 334630..335259
/gene="ycgF"
/locus_tag="BSU03090"
/db_xref="GeneID:938349"
CDS 334630..335259
/gene="ycgF"
/locus_tag="BSU03090"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="aminoacid export permease"
/protein_id="NP_388191.1"
/db_xref="GI:16077378"
/db_xref="GeneID:938349"
/translation="MNIFLSYIVLGLSLSAPVGPVNAAQIDKGIKNGFWHAWIFGLGA
MTADGLYMLFIYFGLSQFLTAPFVKTFLWLFGFFVLTYTGIETLKNVREPMDVRSSRG
KPSYRKTFASGFLISLSNPLSILFWLGIYGSILAKTAEAYNMNQLLIYSSGIMIGILI
WDFCMAITASTFRNLLHEKLLRGLTGIAGVSLLVFGFYFGYQGIKQLLG"
misc_feature 334663..335238
/gene="ycgF"
/locus_tag="BSU03090"
/note="LysE type translocator; Region: LysE; pfam01810"
/db_xref="CDD:216716"
gene 335329..336090
/gene="ycgG"
/locus_tag="BSU03100"
/db_xref="GeneID:938350"
CDS 335329..336090
/gene="ycgG"
/locus_tag="BSU03100"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388192.2"
/db_xref="GI:255767087"
/db_xref="GeneID:938350"
/translation="MVNGIYTKSFLERIQEELPEWQRIAFELLAETLGDDADTFPCIP
GRQAFLTDQLRIAFAGDPRENRTAEELAPLLAEYGKISRDTGKYASLVVLFDTPEDLA
EHYSIEAYEELFWRFLNRLSHQDEKEWPEDIPADPEHYKWEFCFDGEPYFILCATPGH
EARRSRSFPFFMVTFQPRWVFDDLNGSTAFGRNMSRLIRSRLEAYDQAPIHPQLGWYG
GKDNREWKQYFLRDDEKQVSKCPFSYLKNMFNKMK"
misc_feature 335329..336087
/gene="ycgG"
/locus_tag="BSU03100"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3403"
/db_xref="CDD:225938"
gene complement(336092..337432)
/gene="ycgH"
/locus_tag="BSU03110"
/db_xref="GeneID:938347"
CDS complement(336092..337432)
/gene="ycgH"
/locus_tag="BSU03110"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="amino acid transporter"
/protein_id="NP_388193.2"
/db_xref="GI:255767088"
/db_xref="GeneID:938347"
/translation="MSQTKKDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGF
SVLLSFLIAGIGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGKWAGFSNGWVYWTSEM
LITGSQLTAISLFTKHWFPQVPLWVFASIYAVLGLLIIFTGLSVFEKTENVLAVIKTA
AIFMFIVIAILALCGILSGGNHGIHVPNKTSEFFPYGAMGLWTGLIYAFYAFGGIEVM
GLMAVHLKKPEEASKSGKLMLATLAIIYIISIGLALLLVPLHTFTEQDSPFITSLKGY
NLEIILDIFNGIFIIAGFSTLVASLFAVTTLLCTMADDGDAPKCFTLKEGKKICWPAL
GLTFAGLVLSIILSLVLPKNIYEHMTTAAGLMLLYTWLFILFSSKKLTDPEGMGKTQI
YLAMVLIAAAVSGTLFEKSSRPGFFVSIGFLVIIAIVTMIYQKKQGHKDRPASP"
misc_feature complement(336113..337405)
/gene="ycgH"
/locus_tag="BSU03110"
/note="Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism]; Region: AnsP;
COG1113"
/db_xref="CDD:224038"
misc_feature complement(<336686..337384)
/gene="ycgH"
/locus_tag="BSU03110"
/note="Spore germination protein; Region: Spore_permease;
cl17796"
/db_xref="CDD:248350"
gene 337562..338158
/gene="ycgI"
/locus_tag="BSU03120"
/db_xref="GeneID:938342"
CDS 337562..338158
/gene="ycgI"
/locus_tag="BSU03120"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16433904; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_388194.3"
/db_xref="GI:255767089"
/db_xref="GeneID:938342"
/translation="MTQQYIVEPKKGLGLKLKKGQILKVVDVEGQQVADFVAYHAKDF
YEHLDQGATIDANHSIHVKVNDHLYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLL
YGKQKDEFQDTCYDNMNRALEQFGVPKPHMHYPFAIFMNTVLDEKGNLSVETPLSNAG
DYVRLRAEMDLIVAFSSCPIEKGKCNGDSVTSIRVEVS"
misc_feature 337571..338077
/gene="ycgI"
/locus_tag="BSU03120"
/note="Domain of unknown function (DUF1989); Region:
DUF1989; pfam09347"
/db_xref="CDD:220194"
misc_feature 337577..338146
/gene="ycgI"
/locus_tag="BSU03120"
/note="urea carboxylase-associated protein 1; Region:
urea_degr_1; TIGR03424"
/db_xref="CDD:132465"
gene 338288..339106
/gene="nadE"
/locus_tag="BSU03130"
/db_xref="GeneID:938339"
CDS 338288..339106
/gene="nadE"
/locus_tag="BSU03130"
/EC_number="6.3.1.5"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of nicotinamide adenine
dinucleotide (NAD) from nicotinic acid adenine
dinucleotide (NAAD) using either ammonia or glutamine as
the amide donor and ATP; ammonia-utilizing enzymes include
the ones from Bacillus and Escherichia coli while
glutamine-utilizing enzymes include the Mycobacterial one;
forms homodimers"
/codon_start=1
/transl_table=11
/product="NAD synthetase"
/protein_id="NP_388195.1"
/db_xref="GI:16077382"
/db_xref="GeneID:938339"
/translation="MSMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL
GISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDK
SWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDH
AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQ
QSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK"
misc_feature 338330..339103
/gene="nadE"
/locus_tag="BSU03130"
/note="NAD+ synthetase; Region: nadE; TIGR00552"
/db_xref="CDD:233019"
misc_feature 338336..339067
/gene="nadE"
/locus_tag="BSU03130"
/note="NAD+ synthase is a homodimer, which catalyzes the
final step in de novo nicotinamide adenine dinucleotide
(NAD+) biosynthesis, an amide transfer from either ammonia
or glutamine to nicotinic acid adenine dinucleotide
(NaAD). The conversion of NaAD to NAD...; Region:
NAD_synthase; cd00553"
/db_xref="CDD:238309"
misc_feature order(338360..338365,338372..338374,338381..338386,
338597..338605,338609..338614,338621..338626,
338678..338680,338690..338692,338699..338704,
338708..338716,338720..338728,338732..338737,
338798..338803,338810..338827,338834..338839,
339059..339061,339065..339067)
/gene="nadE"
/locus_tag="BSU03130"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238309"
misc_feature order(338417..338428,338441..338443,338519..338527,
338675..338677,338687..338689,338696..338701,
338705..338707,338759..338761,338774..338776,
338789..338800,338807..338809,338912..338917,
338921..338923,338957..338959,339059..339064)
/gene="nadE"
/locus_tag="BSU03130"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:238309"
misc_feature order(338420..338428,338438..338443,338522..338527,
338705..338707,338759..338761,338846..338848,
338909..338914)
/gene="nadE"
/locus_tag="BSU03130"
/note="ATP binding pocket [chemical binding]; other site"
/db_xref="CDD:238309"
misc_feature order(338426..338428,338438..338440,338774..338776,
338912..338914)
/gene="nadE"
/locus_tag="BSU03130"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:238309"
misc_feature order(338549..338551,338900..338923,338939..338962)
/gene="nadE"
/locus_tag="BSU03130"
/note="active-site loop [active]"
/db_xref="CDD:238309"
gene complement(339156..339749)
/gene="tmrB"
/locus_tag="BSU03140"
/db_xref="GeneID:938346"
CDS complement(339156..339749)
/gene="tmrB"
/locus_tag="BSU03140"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15131133, 1624425,
7766032; Product type f: factor"
/codon_start=1
/transl_table=11
/product="ATP-binding tunicamycin resistance protein"
/protein_id="NP_388196.2"
/db_xref="GI:255767090"
/db_xref="GeneID:938346"
/translation="MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVP
QEIAKDDFQSYPLWRAFNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRI
VHHFTLMASKETLLKRLRTRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDV
AENIAARAELPLDPDTRGSLRRFADRLMVKLNHIRIK"
misc_feature complement(339372..339746)
/gene="tmrB"
/locus_tag="BSU03140"
/note="AAA domain; Region: AAA_17; cl17253"
/db_xref="CDD:247807"
misc_feature complement(339384..339743)
/gene="tmrB"
/locus_tag="BSU03140"
/note="AAA domain; Region: AAA_18; pfam13238"
/db_xref="CDD:222000"
gene 340025..340585
/gene="aroK"
/locus_tag="BSU03150"
/db_xref="GeneID:938343"
CDS 340025..340585
/gene="aroK"
/locus_tag="BSU03150"
/EC_number="2.7.1.71"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the formation of shikimate 3-phosphate
from shikimate in aromatic amino acid biosynthesis"
/codon_start=1
/transl_table=11
/product="shikimate kinase"
/protein_id="NP_388197.2"
/db_xref="GI:255767091"
/db_xref="GeneID:938343"
/translation="MNAKRAIPVRERNIVLIGFMGVGKTTIGQLVAKKLYRDFIDIDQ
QIEKDFNMSIPEIFEKKGEDFFRKTEKEYILDICHHKRFKIVSLGGGSFKQEEIRNCC
LENCLVLHLDLSWENWKQRADLLIESRPVLHNRSMDEMEQLFNERKVIYDKHNSKVAT
DNLSPEEVADYIVETLKIGWDLYQPM"
misc_feature 340052..340567
/gene="aroK"
/locus_tag="BSU03150"
/note="shikimate kinase; Reviewed; Region: aroK; PRK00131"
/db_xref="CDD:234654"
misc_feature 340061..340525
/gene="aroK"
/locus_tag="BSU03150"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:238260"
misc_feature order(340085..340102,340385..340387,340409..340411,
340517..340519)
/gene="aroK"
/locus_tag="BSU03150"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:238260"
misc_feature order(340097..340099,340145..340147,340151..340153)
/gene="aroK"
/locus_tag="BSU03150"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:238260"
misc_feature order(340151..340153,340223..340225,340232..340234,
340289..340297,340463..340465)
/gene="aroK"
/locus_tag="BSU03150"
/note="putative shikimate binding site; other site"
/db_xref="CDD:238260"
gene complement(340613..341374)
/gene="ycgJ"
/locus_tag="BSU03160"
/db_xref="GeneID:938344"
CDS complement(340613..341374)
/gene="ycgJ"
/locus_tag="BSU03160"
/EC_number="2.1.-.-"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="NP_388198.2"
/db_xref="GI:255767092"
/db_xref="GeneID:938344"
/translation="MTNETPFSKNAEMYRDEKVFAEGEDLGLMIKTAECRAEHRVLDI
GAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD
SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLR
DPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQIITHLN
HASDEARDTFCITLNQNGQPISFCLKAILIQGIKR"
misc_feature complement(340946..341257)
/gene="ycgJ"
/locus_tag="BSU03160"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(341045..341047,341093..341101,
341174..341179,341225..341245))
/gene="ycgJ"
/locus_tag="BSU03160"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 341492..342466
/gene="ycgK"
/locus_tag="BSU03170"
/db_xref="GeneID:938340"
CDS 341492..342466
/gene="ycgK"
/locus_tag="BSU03170"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 10939241; Product type pr :
regulator"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="NP_388199.2"
/db_xref="GI:255767093"
/db_xref="GeneID:938340"
/translation="MDIKVMEYAAEIARRQSFTKAAEHLHIAQPSLSQQIKKLEAELG
LTLFHRSHGSVTLTPHGRRFIEKAEDIIRSRDDLLREMQERSQGIGHKLSIGIPAVTG
RYLFPPLLKQFLARYPHVEVQLVEKDPVSLEKMTAKGEVDLSVLSLPIEDERLSITPL
LTEPVVLAVPKEKQRWMPPELVALIEKALEEDEGRQPCVPIDMVRNVPFILLKEGFGF
RRTVLDLCAESGFKPNAAFKTSHIETAQSLVANGLGVTMAPNMVRRDKDPGVIYLSIQ
SAPSRTLVFVFLKNRYVSLTAQAFMELSRESLKQTFDEGCLGNKDENI"
misc_feature 341492..342433
/gene="ycgK"
/locus_tag="BSU03170"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 341498..341677
/gene="ycgK"
/locus_tag="BSU03170"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 341765..342400
/gene="ycgK"
/locus_tag="BSU03170"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(341810..341815,341819..341824,341831..341833,
341843..341845,341849..341869,342197..342214,
342230..342235,342239..342244)
/gene="ycgK"
/locus_tag="BSU03170"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 342538..343494
/gene="cah"
/locus_tag="BSU03180"
/db_xref="GeneID:938341"
CDS 342538..343494
/gene="cah"
/locus_tag="BSU03180"
/EC_number="3.1.-.-"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 12842474; Product type e:
enzyme"
/codon_start=1
/transl_table=11
/product="S-deacylase"
/protein_id="NP_388200.1"
/db_xref="GI:16077387"
/db_xref="GeneID:938341"
/translation="MQLFDLPLDQLQTYKPEKTAPKDFSEFWKLSLEELAKVQAEPDL
QPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKEGPHPAIVKYHGYNASYDGEIHEM
VNWALHGYATFGMLVRGQQSSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRA
LEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL
EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPST
VFAAYNHLETKKELKVYRYFGHEYIPAFQTEKLAFFKQHLKG"
misc_feature 342541..343485
/gene="cah"
/locus_tag="BSU03180"
/note="Acetyl xylan esterase (AXE1); Region: AXE1;
pfam05448"
/db_xref="CDD:203252"
gene 343578..344360
/gene="ycgL"
/locus_tag="BSU03190"
/db_xref="GeneID:938336"
CDS 343578..344360
/gene="ycgL"
/locus_tag="BSU03190"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388201.1"
/db_xref="GI:16077388"
/db_xref="GeneID:938336"
/translation="MKQRIIDELKRIEQSYGVKIVYAVESGSRAWGFPSQDSDYDVRF
IYVPKKEWYFSIEQERDVIEEPIHDLLDISGWELRKTLRLFKKSNPPLLEWLSSDIVY
YEAFTTAEQLRKLRTEAFKPEASVYHYINMARRNVKDYLQGQEVKIKKYFYVLRPILA
CQWIEKHGTIPPMDFTVLMNELVAEPELKAEMETLLERKRRGEELDLEARIDVIHQFI
ETEIERIMEAAKELKAEKKDMTSELNRLLLNTVEEVWKDGGS"
misc_feature 343578..344321
/gene="ycgL"
/locus_tag="BSU03190"
/note="Predicted nucleotidyltransferase; Region:
Nuc-transf; pfam10127"
/db_xref="CDD:220587"
gene 344551..345462
/gene="ycgM"
/locus_tag="BSU03200"
/db_xref="GeneID:938338"
CDS 344551..345462
/gene="ycgM"
/locus_tag="BSU03200"
/EC_number="1.5.1.2"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1b: Function experimentally demonstrated
in the studied species; PubMedId: 17536821, 2118500;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="proline oxidase"
/protein_id="NP_388202.1"
/db_xref="GI:16077389"
/db_xref="GeneID:938338"
/translation="MITRDFFLFLSKSGFLNKMARNWGSRVAAGKIIGGNDFNSSIPT
IRQLNSQGLSVTVDHLGEFVNSAEVARERTEECIQTIATIADQELNSHVSLKMTSLGL
DIDMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLDIFKDFRKKYEHVSTVLQA
YLYRTEKDIDDLDSLNPFLRLVKGAYKESEKVAFPEKSDVDENYKKIIRKQLLNGHYT
AIATHDDKMIDFTKQLAKEHGIANDKFEFQMLYGMRSQTQLSLVKEGYNMRVYLPYGE
DWYGYFMRRLAERPSNIAFAFKGMTKK"
misc_feature 344554..345459
/gene="ycgM"
/locus_tag="BSU03200"
/note="Proline dehydrogenase; Region: Pro_dh; pfam01619"
/db_xref="CDD:216609"
gene 345479..347026
/gene="ycgN"
/locus_tag="BSU03210"
/db_xref="GeneID:938333"
CDS 345479..347026
/gene="ycgN"
/locus_tag="BSU03210"
/EC_number="1.5.1.12"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="catalyzes the conversion of 1-proline-5-carboxylate
dehydrogenase to L-glutamate"
/codon_start=1
/transl_table=11
/product="1-pyrroline-5-carboxylate dehydrogenase"
/protein_id="NP_388203.2"
/db_xref="GI:255767094"
/db_xref="GeneID:938333"
/translation="MTTPYKHEPFTNFQDQNNVEAFKKALATVSEYLGKDYPLVINGE
RVETEAKIVSINPADKEEVVGRVSKASQEHAEQAIQAAAKAFEEWRYTSPEERAAVLF
RAAAKVRRRKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSR
EGEKNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFV
EVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPG
QQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYD
QVLERVIEITESKVTAKPDSADVYMGPVIDQGSYDKIMSYIEIGKQEGRLVSGGTGDD
SKGYFIKPTIFADLDPKARLMQEEIFGPVVAFCKVSDFDEALEVANNTEYGLTGAVIT
NNRKHIERAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQA
KTISEMF"
misc_feature 345479..347023
/gene="ycgN"
/locus_tag="BSU03210"
/note="1-pyrroline-5-carboxylate dehydrogenase;
Provisional; Region: PRK03137"
/db_xref="CDD:179543"
misc_feature 345491..347023
/gene="ycgN"
/locus_tag="BSU03210"
/note="Delta(1)-pyrroline-5-carboxylate dehydrogenase,
RocA; Region: ALDH_PutA-P5CDH-RocA; cd07124"
/db_xref="CDD:143442"
misc_feature order(345884..345886,346022..346027,346037..346039,
346334..346336,346430..346441,346883..346885,
346898..346900,346904..346909,346928..346930)
/gene="ycgN"
/locus_tag="BSU03210"
/note="Glutamate binding site [chemical binding]; other
site"
/db_xref="CDD:143442"
misc_feature order(345950..345952,345956..345958,345971..345979,
345983..345985,346277..346282,346289..346291,
346319..346321,346835..346837,346856..346858,
346865..346867,346871..346888,346892..346894,
346910..346912,346916..346927,346937..346942,
346955..346957,346961..346963,346976..346978,
346985..346987,346997..347020)
/gene="ycgN"
/locus_tag="BSU03210"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:143442"
misc_feature order(346010..346015,346091..346093,346097..346102,
346190..346192,346244..346246,346253..346255,
346262..346264)
/gene="ycgN"
/locus_tag="BSU03210"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143442"
misc_feature order(346022..346024,346334..346336,346427..346429,
346436..346438)
/gene="ycgN"
/locus_tag="BSU03210"
/note="catalytic residues [active]"
/db_xref="CDD:143442"
gene 347150..348571
/gene="ycgO"
/locus_tag="BSU03220"
/db_xref="GeneID:938330"
CDS 347150..348571
/gene="ycgO"
/locus_tag="BSU03220"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 14976255, 15849754, 16850406; Product
type pt: transporter"
/codon_start=1
/transl_table=11
/product="proline/ornithine permease"
/protein_id="NP_388204.2"
/db_xref="GI:255767095"
/db_xref="GeneID:938330"
/translation="MLLIGYFAYKRTSNLTDYMLGGRSLGPAVTALSAGAADMSGWLL
MGLPGAMFSTGLSGAWIVIGLCLGAWANWLYVAPRLRTYTEKAGNSITIPGFLENRFG
DQTKLLRLFSGIVILVFFTFYVSSGMVSGGVLFNSILGMDYHTGLWIVTGVVVAYTLF
GGFLAVSWTDFVQGIIMFAALILVPIVTFFHTGGAGDTVAEIRSVDPDMFNIFKGTSV
LGIISLFAWGLGYFGQPHIIVRFMAITSVKEIKRARRIGMGWMILSAVGAVLTGLGGI
AYYHQRGMTLKDPETIFIQLGNILFHPIITGFLISAILAAIMSTISSQLLVTSSSLVE
DLYKSMFRRSASDKELVFLGRLAVLAVSIVALVLAWEKNNTILGLVSYAWAGFGASFG
PVVLLSLFWKRMTKWGALAGMIVGAATVIIWANAGLSDFLYEMIPGFAASLLSVFFVS
ILTQAPSQAVTDQFNDYQDTMSQ"
misc_feature 347150..348505
/gene="ycgO"
/locus_tag="BSU03220"
/note="Na(+)/proline cotransporter PutP and related
proteins; solute binding domain; Region: SLC5sbd_PutP;
cd11475"
/db_xref="CDD:212045"
misc_feature 347153..348526
/gene="ycgO"
/locus_tag="BSU03220"
/note="Predicted symporter [General function prediction
only]; Region: DhlC; COG4147"
/db_xref="CDD:33899"
misc_feature order(347255..347257,347264..347266,348095..348097,
348104..348109)
/gene="ycgO"
/locus_tag="BSU03220"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212045"
gene 348724..349959
/gene="ycgP"
/locus_tag="BSU03230"
/db_xref="GeneID:938337"
CDS 348724..349959
/gene="ycgP"
/locus_tag="BSU03230"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pr: regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="NP_388205.2"
/db_xref="GI:255767096"
/db_xref="GeneID:938337"
/translation="MEELLERVFSFSDVDKLIDFISYELQKPVILESADFFLLAYNSY
YINHFDSANQQTIFSKKCPVQIFERFLKDGIIEKLKTEPEPFRVNKIESIGLNQRVVV
SAKHKGEVMGYIWIQELDQNLTDEELDFLYETSFHVGKIIYKTNKLKQEKEEKAEDLI
KRAIYQQFTSEKELRREAERINTVLPSMFSVVILHAANGDGEAVEDLKENIRSYLNLR
DKVSHVLTIESNIVIVVASFSQKSSVSSAASEFINKLLTHFHFQKIPTPIYIGIGNEY
NHLLKLGKSYTEALEVIKAAEITGNQENIPYEYAKLGIYRYLESIEQKNEFLEYENKD
LALLKAKDEESSTELLKTLEIYLLNNCKTKPAAEQLFIHQNTLNYRIKQITEMTSIDL
SDFRTRCQLYLDLMLMKKK"
misc_feature 348748..349950
/gene="ycgP"
/locus_tag="BSU03230"
/note="Regulator of polyketide synthase expression [Signal
transduction mechanisms / Secondary metabolites
biosynthesis, transport, and catabolism]; Region: COG2508"
/db_xref="CDD:225306"
misc_feature 349789..349944
/gene="ycgP"
/locus_tag="BSU03230"
/note="PucR C-terminal helix-turn-helix domain; Region:
HTH_30; pfam13556"
/db_xref="CDD:205734"
gene complement(349996..350853)
/gene="ycgQ"
/locus_tag="BSU03240"
/db_xref="GeneID:938334"
CDS complement(349996..350853)
/gene="ycgQ"
/locus_tag="BSU03240"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4: Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388206.1"
/db_xref="GI:16077393"
/db_xref="GeneID:938334"
/translation="MFRLLVLMGFTFFFYHLHASGNLTKYINMKYAYLSFIAIFLLAI
LTAVQAYLFIKSPEKSGHHHDHDCGCGHDHEHDHEQNKPFYQRYLIYVVFLFPLVSGI
FFPIATLDSSIVKTKGFSFKAMESGDHYSQTQYLRPDASLYYAQDSYDKQMKQLFNKY
SSKKEISLTDDDFLKGMETIYNYPGEFLGRTIEFHGFAYKGNAINKNQLFVLRFGIIH
CIADSGVYGMLVEFPKDMDIKDDEWIHIKGTLASEYYQPFKSTLPVVKVTDWNTIKKP
DDPYVYRGF"
misc_feature complement(349999..350853)
/gene="ycgQ"
/locus_tag="BSU03240"
/note="Predicted membrane protein [Function unknown];
Region: COG3689"
/db_xref="CDD:226214"
gene complement(350858..351742)
/gene="ycgR"
/locus_tag="BSU03250"
/db_xref="GeneID:938335"
CDS complement(350858..351742)
/gene="ycgR"
/locus_tag="BSU03250"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="NP_388207.1"
/db_xref="GI:16077394"
/db_xref="GeneID:938335"
/translation="MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMI
ARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLLLKGVPLHAGVAFMLTAPIINP
IVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHG
TLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMM
GLAFVLSLCSEVDAFIASSFSSTFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFL
LITYIVVIVLAGSLLVKG"
misc_feature complement(350867..351733)
/gene="ycgR"
/locus_tag="BSU03250"
/note="Predicted permeases [General function prediction
only]; Region: COG0701"
/db_xref="CDD:223773"
gene complement(351842..352696)
/gene="ycgS"
/locus_tag="BSU03260"
/db_xref="GeneID:938332"
CDS complement(351842..352696)
/gene="ycgS"
/locus_tag="BSU03260"
/EC_number="3.7.1.-"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe: enzyme"
/codon_start=1
/transl_table=11
/product="aromatic hydrocarbon hydrolase"
/protein_id="NP_388208.1"
/db_xref="GI:16077395"
/db_xref="GeneID:938332"
/translation="MKRRVETITFDGGTLEYSVTGKGTPILVMHGGHSNCYEEFGYTA
LIEQGYSIITPSRPGYGRTSKEIGKSLANACRFYVKLLDHLQIESVHVIAISAGGPSG
ICFASHYPERVNTLTLQSAVTKEWLTPKDTEYKLGEILFRPPVEKWIWKLISSLNNAF
PRLMFRAMSPQFSTLPFQRIKSLMNEKDIEAFRKMNSRQRSGEGFLIDLSQTAAVSLK
DLQAIICPVLIMQSVYDGLVDLSHAHHAKEHIRGAVLCLLHSWGHLIWLGKEAAETGS
ILLGFLES"
misc_feature complement(351845..352687)
/gene="ycgS"
/locus_tag="BSU03260"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 352858..353868
/gene="ycgT"
/locus_tag="BSU03270"
/db_xref="GeneID:938327"
CDS 352858..353868
/gene="ycgT"
/locus_tag="BSU03270"
/EC_number="1.8.1.-"
/function="16.8: Protect"
/function="16.6: Maintain"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 16672620; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="thioredoxin reductase"
/protein_id="NP_388209.1"
/db_xref="GI:16077396"
/db_xref="GeneID:938327"
/translation="MAENQEVYDVTIIGGGPIGLFTAFYCGMRELKTKVIEFLPKLGG
KVSLFFPEKIIRDIGGIPGIAGKQLIEQLKEQAATFDPDIVLNQRVTGFERLDDGTIV
LTGSEGKKHYTRTVILACGMGTLEVNEFDSEDAARYAGKNLHYGVEKLDAFKGKRVVI
SGGGDTAVDWANELEPIAASVTVVHRREEFGGMESSVTKMKQSSVRVLTPYRLEQLNG
DEEGIKSVTVCHTESGQRKDIEIDELIINHGFKIDLGPMMEWGLEIEEGRVKADRHMR
TNLPGVFVAGDAAFYESKLRLIAGGFTEGPTAVNSAKAYLDPKAENMAMYSTHHKKLV
HK"
misc_feature 352870..353820
/gene="ycgT"
/locus_tag="BSU03270"
/note="Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones]; Region: TrxB;
COG0492"
/db_xref="CDD:223566"
misc_feature 352888..353421
/gene="ycgT"
/locus_tag="BSU03270"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; cl17500"
/db_xref="CDD:248054"
misc_feature 353326..353541
/gene="ycgT"
/locus_tag="BSU03270"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
gene complement(353900..355351)
/gene="nasF"
/locus_tag="BSU03280"
/db_xref="GeneID:938324"
CDS complement(353900..355351)
/gene="nasF"
/locus_tag="BSU03280"
/EC_number="2.1.1.107"
/function="16.10: Respire"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10217486, 15028686,
9765565; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="uroporphyrin-III C-methyltransferase"
/protein_id="NP_388210.1"
/db_xref="GI:16077397"
/db_xref="GeneID:938324"
/translation="MIMKNGIVYFVGAGPGDPGLLTIKGKQALKEADVILYDRLANPK
LLEFASPDCQFIYCGKLPNRHFMKQKEINALLVEKALNGLTVVRLKGGDPSVFGRVGE
EADALHEHGIRYEMVPGITSGIAAPLYAGIPVTHRDFASSFAMITAHDKSLKGTPNLD
WEGLARSVQTLVFYMGVKNLSYICQQLISYGKSPSVPVIVIQWGTWGRQRSVKGTLEN
IQQKVQEHQITNPAIIVIGDIVNFQTHSWFESKPLIGRHLMVVTHGEDEDPLADKLRD
SGADLIEWPKWRTENMPVNEEILRKIGTFEDVFFTSRRAVCEFFRALASQKIDIRQLT
AKLSAASEQAKTELEKRGFLVTAIQPDSEKRLVVGSRHAVENMQKHESCSFYITHENV
IDDRFTHMIQRTISESPLHMVICPNKLSVQQLINGGEQIGILPEPSASRPPIVCIGDD
SAAGIYGFTAVQEQDELLAFIHNQHAEKKLLHT"
misc_feature complement(354629..355330)
/gene="nasF"
/locus_tag="BSU03280"
/note="Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT); Region: SUMT; cd11642"
/db_xref="CDD:212501"
misc_feature complement(order(354653..354664,354734..354736,
354740..354745,354749..354751,354821..354835,
354905..354907,354911..354913,354974..354976,
354986..354991,355055..355066,355073..355081,
355232..355240,355307..355309))
/gene="nasF"
/locus_tag="BSU03280"
/note="active site"
/db_xref="CDD:212501"
misc_feature complement(order(354653..354661,354740..354745,
354749..354751,354830..354832,354986..354991,
355061..355066,355073..355081,355307..355309))
/gene="nasF"
/locus_tag="BSU03280"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212501"
misc_feature complement(order(354917..354931,354941..354949,
354953..354955,354977..354982,354992..354994,
354998..355000,355004..355006,355025..355030,
355040..355042,355046..355051,355061..355069,
355073..355075,355274..355276,355280..355297))
/gene="nasF"
/locus_tag="BSU03280"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212501"
misc_feature complement(353903..354589)
/gene="nasF"
/locus_tag="BSU03280"
/note="Uroporphyrinogen-III synthase [Coenzyme
metabolism]; Region: HemD; COG1587"
/db_xref="CDD:224503"
misc_feature complement(<354263..354559)
/gene="nasF"
/locus_tag="BSU03280"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
gene complement(355412..355732)
/gene="nasE"
/locus_tag="BSU03290"
/db_xref="GeneID:938331"
CDS complement(355412..355732)
/gene="nasE"
/locus_tag="BSU03290"
/EC_number="1.7.1.4"
/function="16.10: Respire"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10217486, 15028686,
9765565; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="assimilatory nitrite reductase subunit"
/protein_id="NP_388211.1"
/db_xref="GI:16077398"
/db_xref="GeneID:938331"
/translation="MVNKDVTKVCIGKIEELPEQLGKTVYIEDKELAVFKLSDGSIRA
IENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDGIVQEPDHGCVKTYETLIEGEHV
YLVY"
misc_feature complement(355421..355711)
/gene="nasE"
/locus_tag="BSU03290"
/note="Small subunit of nitrite reductase (NirD) family,
Rieske domain; composed of proteins similar to the
Bacillus subtilis small subunit of assimilatory nitrite
reductase containing a Rieske domain. The Rieske domain is
a [2Fe-2S] cluster binding domain...; Region:
Rieske_NirD_small_Bacillus; cd03530"
/db_xref="CDD:239606"
misc_feature complement(order(355514..355516,355520..355522,
355529..355531,355577..355582,355586..355588))
/gene="nasE"
/locus_tag="BSU03290"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:239606"
gene complement(355764..358181)
/gene="nasD"
/locus_tag="BSU03300"
/db_xref="GeneID:938329"
CDS complement(355764..358181)
/gene="nasD"
/locus_tag="BSU03300"
/EC_number="1.7.1.4"
/function="16.10: Respire"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10972836, 15028686,
9765565; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="assimilatory nitrite reductase subunit"
/protein_id="NP_388212.1"
/db_xref="GI:16077399"
/db_xref="GeneID:938329"
/translation="MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYN
RILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPY
DELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA
ARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDR
VEGLRFKDGTSIEADLVVMAVGIRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVG
ECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQLKVSGVEVFSAGDFN
ESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSK
ISILQPLSQEAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGAS
RSCGGCKPLVEEILQHTLGSDFDASAQKEAICGCTTLSRDEVVEEIKAKGLSHTREVM
NVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGTYSVVPR
MYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYA
YGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAES
GIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAGAYLQYYRETANY
LERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELF
ENVVTTS"
misc_feature complement(355809..358166)
/gene="nasD"
/locus_tag="BSU03300"
/note="nitrite reductase [NAD(P)H], large subunit; Region:
nitri_red_nirB; TIGR02374"
/db_xref="CDD:162827"
misc_feature complement(357501..>357677)
/gene="nasD"
/locus_tag="BSU03300"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature complement(356778..356939)
/gene="nasD"
/locus_tag="BSU03300"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:218027"
misc_feature complement(356592..356741)
/gene="nasD"
/locus_tag="BSU03300"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:218027"
misc_feature complement(356331..356516)
/gene="nasD"
/locus_tag="BSU03300"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:217572"
gene complement(358303..360435)
/gene="nasC"
/locus_tag="BSU03310"
/db_xref="GeneID:938321"
CDS complement(358303..360435)
/gene="nasC"
/locus_tag="BSU03310"
/EC_number="1.7.99.4"
/function="16.2: Construct biomass (Anabolism)"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10972836, 15028686,
9765565; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="assimilatory nitrate reductase catalytic
subunit"
/protein_id="NP_388213.2"
/db_xref="GI:255767097"
/db_xref="GeneID:938321"
/translation="MTERLLRYFRDKQQDVQSEKTYDTQCPFCSMQCKMQLVEQTIVT
RKKYTAIGIDNPTTQGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHI
KDQVTMIQTEHGHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAAT
AANQTFGADRGLTNPLSDIPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDP
RETATTKIADLHLKIKPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDS
LDLNDIAEQTSVSLVDIRKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLIT
GKIGKPYSGYGAITGQGNGQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDEL
PRKGVSAYEMMEKINDGDIKGLFLMCSNPAVSSPNANLVKKALRRLTFFVAIDLFISE
TAKYADVILPASSYLEDEGTMTNVEGRVTLREASRPCPGEAKHDWQIICDLASALGKG
RYFSYTSAEDIFNELREASRGGIADYSGISYGRLRREGGIHWPCPESDHPGTGRLFTE
SFAHPDQKAALSVIPNEPPVPKEKPTADYPLYLTTGRVMSHYLTGVQTRKSAALAARH
FESFMEIHPQTAATYNIEDRVLVKIESPRGSITVRSKLSEQIRKDTVFVPIHWADAQN
VNDLIGEALDPACKMPGFKVCAVRIIPI"
misc_feature complement(358681..360369)
/gene="nasC"
/locus_tag="BSU03310"
/note="Nitrate reductases, NapA (Nitrate-R-NapA), NasA,
and NarB catalyze the reduction of nitrate to nitrite.
Monomeric Nas is located in the cytoplasm and participates
in nitrogen assimilation. Dimeric Nap is located in the
periplasm and is coupled to quinol...; Region:
MopB_Nitrate-R-NapA-like; cd02754"
/db_xref="CDD:239155"
misc_feature complement(358315..360366)
/gene="nasC"
/locus_tag="BSU03310"
/note="formate dehydrogenase, alpha subunit,
archaeal-type; Region: Fdh-alpha; TIGR01591"
/db_xref="CDD:130652"
misc_feature complement(order(359842..359844,360247..360249,
360337..360339,360349..360354,360358..360360))
/gene="nasC"
/locus_tag="BSU03310"
/note="[4Fe-4S] binding site [ion binding]; other site"
/db_xref="CDD:239155"
misc_feature complement(order(358954..358956,359035..359037,
359047..359055,359095..359106,359164..359166,
359176..359181,359386..359391,359488..359490,
359497..359505,359722..359724,359728..359730,
359779..359787,359851..359856,359863..359874,
359974..359976,359986..359988,360061..360063,
360241..360243))
/gene="nasC"
/locus_tag="BSU03310"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:239155"
misc_feature complement(358309..358659)
/gene="nasC"
/locus_tag="BSU03310"
/note="This CD includes formate dehydrogenases (Fdh) H and
N; nitrate reductases, Nap and Nas; and other related
proteins. Formate dehydrogenase H is a component of the
anaerobic formate hydrogen lyase complex and catalyzes
the reversible oxidation of formate...; Region:
MopB_CT_Fdh-Nap-like; cd00508"
/db_xref="CDD:238282"
misc_feature complement(order(358333..358338,358384..358386,
358411..358413,358606..358617,358621..358635))
/gene="nasC"
/locus_tag="BSU03310"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:238282"
gene complement(360442..362757)
/gene="nasB"
/locus_tag="BSU03320"
/db_xref="GeneID:938328"
CDS complement(360442..362757)
/gene="nasB"
/locus_tag="BSU03320"
/function="16.2: Construct biomass (Anabolism)"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10940050, 10972836,
15028686, 7836289, 9765565; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="assimilatory nitrate reductase electron transfer
subunit"
/protein_id="NP_388214.2"
/db_xref="GI:255767098"
/db_xref="GeneID:938328"
/translation="MKKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYN
RILLSSVLQGEASLDDITLNSKDWYDKHGITLYTGETVIQIDTDQQQVITDRKRTLSY
DKLIVATGSSPHILPIPGADKKGVYGFRTIEDCQALMNMAQHFQKAAVIGAGLLGLEA
AVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATK
ADRIHFKDGSSLKADLIVMAAGVKPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVG
ECAEHNGTVYGLVAPLYEQGKALASHICGVPCEEYQGSAPSAALKIAGIDVWSAGKIQ
EDERTTSIKIYDEQAGVYKKALFVDDKLAGVILFGDTRDKQRLLDSLLKQRDISIAKK
QIIEPETSGPLFESMPSSETICQCNTVTKGAIEDAVHTNSLTTVEEVKHCTKATGSCG
GCKPLVEDLLRYMTNSEYTKPASTPSFCSCTDFTEDDIIAELQRRPFTNPAEVMNQLD
WKTKNGCSTCVPAIQYYLEMLYPGFVQPEPATEETCILIPQMYGGRTNAEQLRTIANI
IEAYSIPDVSITHGQRLKLSGIKPADLPNMKKDLKMPVYTNEHRHALQSIKACTCGQN
RSIQQLAAQIERQLEMLPLPAPISISLSCETDCTEAALQDVGAIRTQAGWDIHIGGVR
GTHARSGALFCVTENEDSTAGMIKGLIQYYRETAHYLEGVHQWIDRLGIVHIREVLFE
EDLRAQLLESLQTDLSLIQNPTVETGAYKKG"
misc_feature complement(360451..362742)
/gene="nasB"
/locus_tag="BSU03320"
/note="nitrite reductase [NAD(P)H], large subunit; Region:
nitri_red_nirB; TIGR02374"
/db_xref="CDD:162827"
misc_feature complement(362074..>362259)
/gene="nasB"
/locus_tag="BSU03320"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:215691"
misc_feature complement(361375..361527)
/gene="nasB"
/locus_tag="BSU03320"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:218027"
misc_feature complement(361171..361326)
/gene="nasB"
/locus_tag="BSU03320"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:218027"
misc_feature complement(360955..>361104)
/gene="nasB"
/locus_tag="BSU03320"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:217572"
gene 362937..364142
/gene="nasA"
/locus_tag="BSU03330"
/db_xref="GeneID:938326"
CDS 362937..364142
/gene="nasA"
/locus_tag="BSU03330"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15849754, 16850406,
7868621; Product type t: transporter"
/codon_start=1
/transl_table=11
/product="nitrate transporter"
/protein_id="NP_388215.2"
/db_xref="GI:255767099"
/db_xref="GeneID:938326"
/translation="MKLSELKTSGHPLTLLCSFLYFDVSFMIWVMLGALGVYISQDFG
LSPFEKGLVVAVPILSGSVFRIILGILTDRIGPKKTAVIGMLVTMIPLLWGTFGGRSL
TELYAIGILLGVAGASFAVALPMASRWYPPHLQGLAMGIAGAGNSGTLFATLFGPRLA
EQFGWHIVMGIALIPLLIVFILFVSMAKDSPAQPSPQPLKSYLHVFGQKETWFFCLLY
SVTFGGFVGLSSFLSIFFVDQYQLSKIHAGDFVTLCVAAGSFFRPVGGLISDRVGGTK
VLSVLFVIVALCMAGVSSLPSLSMVIVLLFVGMMGLGMGNGAVFQLVPQRFRKEIGMV
TGIVGAAGGIGGFFLPNILGSLKQMTGTYAIGFITFSCIALLAFALVLAAGYYWRKSW
SAESSPADV"
misc_feature 362937..364049
/gene="nasA"
/locus_tag="BSU03330"
/note="Nitrate/nitrite transporter [Inorganic ion
transport and metabolism]; Region: NarK; COG2223"
/db_xref="CDD:225133"
misc_feature 362976..>363830
/gene="nasA"
/locus_tag="BSU03330"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(363021..363023,363030..363038,363042..363047,
363096..363098,363105..363110,363117..363119,
363129..363134,363138..363143,363282..363287,
363294..363299,363306..363308,363315..363317,
363351..363356,363363..363368,363381..363383,
363600..363602,363609..363614,363621..363626,
363633..363635,363675..363677,363687..363689,
363699..363701,363708..363710,363720..363722)
/gene="nasA"
/locus_tag="BSU03330"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 364259..365173
/gene="yciA"
/locus_tag="BSU03340"
/db_xref="GeneID:938325"
CDS 364259..365173
/gene="yciA"
/locus_tag="BSU03340"
/function="16.2: Construct biomass (Anabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="similar protein in Methanocaldococcus converts GTP
to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the
first step in methanopterin biosynthesis"
/codon_start=1
/transl_table=11
/product="GTP cyclohydrolase"
/protein_id="NP_388216.2"
/db_xref="GI:255767100"
/db_xref="GeneID:938325"
/translation="MNQHTLLPKKTERLQYFGSVSPIKGEKPVEKEKMKDLQNIRKDY
FFDIQHVGVANVSHPVTITSAMMPAEQTTAANFTMTCNLPRNQKGINMSRLTELLQVY
HQNGWILSFSSLQQFTKELAENMDTSSATVEVRFPWFFERKSPKLEKAGLMHADIFMS
VTYRKDQPFKQRAGISAKVTTLCPCSKEISEYSAHNQRGTVSIWADIHPAASLPSDVK
ADLLHAAESNASARLHPVLKRPDEKAVTETAYENPRFVEDLARLIAADLFELEWVSAF
EIECRNEESIHLHDAYAKLCFSKEVDKI"
misc_feature 364262..365170
/gene="yciA"
/locus_tag="BSU03340"
/note="Type I GTP cyclohydrolase folE2; Region: GCHY-1;
cl00642"
/db_xref="CDD:242000"
gene 365170..365754
/gene="yciB"
/locus_tag="BSU03350"
/db_xref="GeneID:938318"
CDS 365170..365754
/gene="yciB"
/locus_tag="BSU03350"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12426338; Product type pt :
transporter"
/codon_start=1
/transl_table=11
/product="metal uptake system lipoprotein"
/protein_id="NP_388217.2"
/db_xref="GI:255767101"
/db_xref="GeneID:938318"
/translation="MKLSLFIIAVLMPVILLSACSDHAEEHASINTKKTVENITDVRK
TAKTSIDWTKPSGGEYPDIKQKHVWIDVNVKEQKAYIKEGSNTIYTMMISSGLDQTKD
DATPKGTFYVEPERGEWFFSEGYQEGAEYWVSWKNHGEFLFHSVPMTKDQKVIKTEAE
KLGTKASHGCIRLTIPDAKWVYENIPEHTKVVIS"
misc_feature 365170..365751
/gene="yciB"
/locus_tag="BSU03350"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: ErfK; COG1376"
/db_xref="CDD:224294"
misc_feature 365371..365748
/gene="yciB"
/locus_tag="BSU03350"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:217702"
gene 365850..366035
/gene="yczL"
/locus_tag="BSU03359"
/db_xref="GeneID:8303053"
CDS 365850..366035
/gene="yczL"
/locus_tag="BSU03359"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5: No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003097674.1"
/db_xref="GI:255767102"
/db_xref="GeneID:8303053"
/translation="MKSGKASIKDLAVGKGKDLRWGKGLNAVGVFTDLEIGRQREMSA
KSCSTPLYIRRSIQFKS"
gene 366063..367256
/gene="yciC"
/locus_tag="BSU03360"
/db_xref="GeneID:938322"
CDS 366063..367256
/gene="yciC"
/locus_tag="BSU03360"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 12426338, 18344368, 2013568, 9811636;
Product type pt: transporter"
/codon_start=1
/transl_table=11
/product="metallochaperone with NTPase activity"
/protein_id="NP_388218.1"
/db_xref="GI:16077405"
/db_xref="GeneID:938322"
/translation="MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVN
IDAGLVKQEGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGI
SEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGE
KDEREIADLLIDQIEFCDVLILNKCDLVSEQELEQLENVLRKLQPRARFIRSVKGNVK
PQEILHTGLFNFEEASGSAGWIQELTAGHAEHTPETEEYGISSFVYKRRLPFHSTRFY
RWLDQMPKNVVRAKGIVWCASHNNLALLMSQAGPSVTIEPVSYWVAALPKLEQEQVKQ
QEPEILEEWDPEFGDRLTQLVFIGTDLDEETITKELDQCLLTEYEFDSDWSLFEDPFK
WKLNQ"
misc_feature 366072..367190
/gene="yciC"
/locus_tag="BSU03360"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:223597"
misc_feature 366075..366695
/gene="yciC"
/locus_tag="BSU03360"
/note="CobW/HypB/UreG, nucleotide-binding domain; Region:
cobW; pfam02492"
/db_xref="CDD:217066"
misc_feature 366837..367184
/gene="yciC"
/locus_tag="BSU03360"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; smart00833"
/db_xref="CDD:214844"
gene complement(367305..367985)
/gene="yckA"
/locus_tag="BSU03370"
/db_xref="GeneID:938323"
CDS complement(367305..367985)
/gene="yckA"
/locus_tag="BSU03370"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pt:
transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_388219.1"
/db_xref="GI:16077406"
/db_xref="GeneID:938323"
/translation="MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVI
GLFISLARMSKLALLRWPAKLYISFMRGVPILVILFILYFGFPYIGIEFSAVTAALIG
FSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNIL
EKKYAHYV"
misc_feature complement(367308..367913)
/gene="yckA"
/locus_tag="BSU03370"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:226670"
misc_feature complement(367347..367907)
/gene="yckA"
/locus_tag="BSU03370"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(367347..367352,367359..367364,
367371..367376,367380..367385,367392..367397,
367425..367430,367467..367472,367479..367490,
367509..367511,367518..367523,367563..367565,
367614..367616,367623..367628,367638..367640,
367644..367649,367656..367658,367662..367664,
367668..367673,367737..367739,367743..367748,
367755..367784,367788..367799,367827..367829,
367842..367847,367854..367859))
/gene="yckA"
/locus_tag="BSU03370"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(367473..367490,367737..367781))
/gene="yckA"
/locus_tag="BSU03370"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(367395..367397,367425..367427,
367434..367436,367470..367472,367686..367688,
367737..367739))
/gene="yckA"
/locus_tag="BSU03370"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(367542..367544,367554..367559,
367575..367613))
/gene="yckA"
/locus_tag="BSU03370"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(367995..368858)
/gene="yckB"
/locus_tag="BSU03380"
/db_xref="GeneID:938320"
CDS complement(367995..368858)
/gene="yckB"
/locus_tag="BSU03380"
/function="16.1: Circulate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pt: transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter binding lipoprotein"
/protein_id="NP_388220.1"
/db_xref="GI:16077407"
/db_xref="GeneID:938320"
/translation="MKSFMHSKAVIFSFTMAFFLILAACSGKNEADSKDTGWEQIKDK
GKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTA
VNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAA
GAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDL
NITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSK
KIDADVQDVDL"
misc_feature complement(368046..368720)
/gene="yckB"
/locus_tag="BSU03380"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:215950"
misc_feature complement(368052..368720)
/gene="yckB"
/locus_tag="BSU03380"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:238078"
misc_feature complement(order(368247..368249,368361..368363,
368496..368498,368571..368573,368694..368696))
/gene="yckB"
/locus_tag="BSU03380"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature complement(order(368268..368270,368286..368288,
368298..368300))
/gene="yckB"
/locus_tag="BSU03380"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
misc_feature complement(368157..368174)
/gene="yckB"
/locus_tag="BSU03380"
/note="hinge residues; other site"
/db_xref="CDD:238078"
gene 369236..369691
/gene="yckC"
/locus_tag="BSU03390"
/db_xref="GeneID:938315"
CDS 369236..369691
/gene="yckC"
/locus_tag="BSU03390"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; PubMedId: 15849754, 16850406; Product type pm:
membrane component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388221.1"
/db_xref="GI:16077408"
/db_xref="GeneID:938315"
/translation="MNIYKPAGFWIRLGAALLDYIIVSVPLLLIYWLITGKDPNDSMF
ISLVVLLYSILLPMFWRGYLIGKRICGIRIVKKDGSQVSLLTMFLRVIVAGLVYCITF
GLGLIASLILIAVREDKRTLHDLIAGTYVTYATPGEEELNADEEIRKSE"
misc_feature 369251..369619
/gene="yckC"
/locus_tag="BSU03390"
/note="RDD family; Region: RDD; pfam06271"
/db_xref="CDD:218966"
gene 369773..370105
/gene="yckD"
/locus_tag="BSU03400"
/db_xref="GeneID:938319"
CDS 369773..370105
/gene="yckD"
/locus_tag="BSU03400"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pf: factor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_388222.1"
/db_xref="GI:16077409"
/db_xref="GeneID:938319"
/translation="MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQK
KEIEQLEAEILKKRKDVISKYVQYGILPKERGEHIKNHLDKHFEMMKQNGFVPKHHPH
PHKFEKRH"
misc_feature 369887..370060
/gene="yckD"
/locus_tag="BSU03400"
/note="Protein of unknown function (DUF2680); Region:
DUF2680; pfam10925"
/db_xref="CDD:151372"
gene 370259..371692
/gene="bglC"
/locus_tag="BSU03410"
/db_xref="GeneID:938317"
CDS 370259..371692
/gene="bglC"
/locus_tag="BSU03410"
/EC_number="3.2.1.21"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 14652714, 18069788;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="aryl-phospho-beta-d-glucosidase"
/protein_id="NP_388223.1"
/db_xref="GI:16077410"
/db_xref="GeneID:938317"
/translation="MIHQHPESFPKHFLWGSASAAYQIEGAWNEDGKGPSVWDVFTKI
PGKTFKGTNGEIAVDHYHRFKEDVALMAEMGLKAYRFSVSWPRVFPKGKGEINEAGLA
FYDSLIDELLSHHIEPVLTLYHWDLPQALMDEYGGFESRNIIEDFNHYCITLYKRFGD
RVKYWVTLNEQNYNFNHGFITAMHPPGVKDRKRFYEANHIAFLANAKAIESFREYVPE
GKIGPSFAYSPAYPLSSHPEDILAFENAEEFTNNWWLDMYCWGTYPQIPFRCLEKQGW
APTIEAGDMDLLAKGKPDFVGVNYYQTITYERNPLDGVSEGKMNTTGQKGTNQETGIP
GVFKTKKNPHLTTSNWDWTIDPIGLRIGLRRITSRYQLPVFITENGLGEFDKVEDGTV
QDDYRIDYLRSHLEQCRQAISDGVDLIGYCSWSFTDLLSWLNGYQKRYGFVYVNRDEE
STSDLKRLKKKSFYWYQDVIKTNGESL"
misc_feature 370271..371683
/gene="bglC"
/locus_tag="BSU03410"
/note="Glycosyl hydrolase family 1; Region: Glyco_hydro_1;
pfam00232"
/db_xref="CDD:215809"
misc_feature 370286..371656
/gene="bglC"
/locus_tag="BSU03410"
/note="beta-galactosidase; Region: BGL; TIGR03356"
/db_xref="CDD:234180"
gene complement(371729..372127)
/gene="nin"
/locus_tag="BSU03420"
/db_xref="GeneID:938312"
CDS complement(371729..372127)
/gene="nin"
/locus_tag="BSU03420"
/function="16.3: Control"
/function="16.11: Scavenge (Catabolism)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11359569, 11814663;
Product type r: regulator"
/codon_start=1
/transl_table=11
/product="inhibitor of the DNA degrading activity of NucA
(competence)"
/protein_id="NP_388224.1"
/db_xref="GI:16077411"
/db_xref="GeneID:938312"
/translation="MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAAD
GAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLP
KGDYQLTCWTVPAEMSDLHADTYIIDAVSV"
misc_feature complement(371732..372103)
/gene="nin"
/locus_tag="BSU03420"
/note="Competence protein J (ComJ); Region: ComJ;
pfam11033"
/db_xref="CDD:151480"
gene complement(372154..372597)
/gene="nucA"
/locus_tag="BSU03430"
/db_xref="GeneID:938309"
CDS complement(372154..372597)
/gene="nucA"
/locus_tag="BSU03430"
/function="16.6: Maintain"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 11359569, 11814663,
2841296, 7746143; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="endonuclease"
/protein_id="NP_388225.2"
/db_xref="GI:50812179"
/db_xref="GeneID:938309"
/translation="MTTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDET
MAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGAEERREQSLKDVPSKKGYDRDEWPM
AMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ"
misc_feature complement(372160..372465)
/gene="nucA"
/locus_tag="BSU03430"
/note="Deoxyribonuclease NucA/NucB; Region:
DNase_NucA_NucB; pfam14040"
/db_xref="CDD:222509"
gene complement(372771..374492)
/gene="tlpC"
/locus_tag="BSU03440"
/db_xref="GeneID:938316"
CDS complement(372771..374492)
/gene="tlpC"
/locus_tag="BSU03440"
/function="16.3: Control"
/function="16.12: Sense"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a: Function of homologous gene
experimentally demonstrated in an other organism;
PubMedId: 15187186, 7704255, 7921238; Product type rc :
receptor"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="NP_388226.2"
/db_xref="GI:255767103"
/db_xref="GeneID:938316"
/translation="MLIKRFKMKLGTKILCLVFVVILLFSASVGTVMLKEITESMKQM
ATEKAKGDLALSSTYIDDVMSGDWQVKNNKLYKGQTQINGNEDIVDLLGEKTGDTITI
FQGDTRVATNVMKNGERAVGTQASSEVIAAVLKKGKRFYGQADVAGSSYQTAYMPLKD
QNGNIIGMLYTGANQSILASLTQSLFTQFAIVLVIVIMVSVILVLVFTRKINKRLNAL
KSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASASQQ
LSAGAEETNQASEKITEAVQQIANGAQDQITRIENSESSLKQASADIRDISANTAAIA
DKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQI
ADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMN
RSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQI
NDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKM
INQAENG"
misc_feature complement(373719..373862)
/gene="tlpC"
/locus_tag="BSU03440"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(373725..373730,373737..373742,
373746..373751,373758..373763,373767..373772,
373818..373820,373824..373829,373836..373841,
373845..373850,373857..373862))
/gene="tlpC"
/locus_tag="BSU03440"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(372945..373541)
/gene="tlpC"
/locus_tag="BSU03440"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(372948..372953,372960..372962,
372969..372974,372981..372983,372990..372995,
372999..373004,373011..373016,373020..373025,
373032..373034,373041..373046,373053..373055,
373062..373067,373074..373079,373083..373088,
373095..373097,373104..373109,373116..373118,
373125..373130,373167..373172,373179..373184,
373188..373193,373200..373205,373212..373214,
373221..373226,373233..373235,373242..373244,
373254..373256,373275..373277,373284..373286,
373296..373298,373305..373310,373317..373319,
373326..373328,373335..373340,373347..373352,
373359..373361,373368..373373,373377..373379,
373389..373394,373398..373403,373410..373412,
373419..373424,373431..373436,373443..373445,
373452..373457,373464..373466,373473..373478,
373482..373487,373494..373496,373503..373508,
373515..373520))
/gene="tlpC"
/locus_tag="BSU03440"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(372792..373502)
/gene="tlpC"
/locus_tag="BSU03440"
/note="Methyl-accepting chemotaxis protein (MCP)
signalling domain; Region: MCPsignal; pfam00015"
/db_xref="CDD:143806"
misc_feature complement(373209..373310)
/gene="tlpC"
/locus_tag="BSU03440"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(374603..375160)
/gene="hxlB"
/locus_tag="BSU03450"
/db_xref="GeneID:938313"
CDS complement(374603..375160)
/gene="hxlB"
/locus_tag="BSU03450"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10572115, 15978081;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="6-phospho 3-hexuloisomerase"
/protein_id="NP_388227.1"
/db_xref="GI:16077414"
/db_xref="GeneID:938313"
/translation="MKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGA
GRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAK
SLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYD
AVILKLMEKKGLDSETMFTHHANLE"
misc_feature complement(374621..>375154)
/gene="hxlB"
/locus_tag="BSU03450"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:224651"
misc_feature complement(374615..375151)
/gene="hxlB"
/locus_tag="BSU03450"
/note="Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily. In
the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with...; Region:
SIS_PHI; cd05005"
/db_xref="CDD:240138"
misc_feature complement(order(374618..374629,374666..374671,
374678..374683,374702..374704,374714..374716,
374861..374863,374870..374872,374882..374887,
374939..374950,374966..374968,374984..374986,
374990..374995,375002..375007,375014..375016,
375023..375025,375128..375130,375137..375145))
/gene="hxlB"
/locus_tag="BSU03450"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:240138"
misc_feature complement(order(374897..374905,375020..375022))
/gene="hxlB"
/locus_tag="BSU03450"
/note="active site"
/db_xref="CDD:240138"
gene complement(375166..375798)
/gene="hxlA"
/locus_tag="BSU03460"
/db_xref="GeneID:938314"
CDS complement(375166..375798)
/gene="hxlA"
/locus_tag="BSU03460"
/function="16.11: Scavenge (Catabolism)"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 10572115, 15978081;
Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="3-hexulose-6-phosphate synthase"
/protein_id="NP_388228.1"
/db_xref="GI:16077415"
/db_xref="GeneID:938314"
/translation="MELQLALDLVNIPEAIELVKEVEQYIDVVEIGTPVVINEGLRAV
KEIKEAFPQLKVLADLKIMDAGGYEIMKASEAGADIITVLGATDDATIKGAVEEAKKQ
KKKILVDMINVKDIESRAKEIDALGVDYICVHTGYDLQAEGKNSFEELTTIKNTVKNA
KTAIAGGIKLDTLPEVIQQKPDLVIVGGGITSAADKAETASKMKQLIVQG"
misc_feature complement(375190..375798)
/gene="hxlA"
/locus_tag="BSU03460"
/note="3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC)
and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC
catalyzes the formation of L-xylulose 5-phosphate and
carbon dioxide from 3-keto-L-gulonate 6-phosphate as part
of the anaerobic pathway for...; Region: KGPDC_HPS;
cd04726"
/db_xref="CDD:240077"
misc_feature complement(order(375235..375240,375298..375300,
375304..375306,375397..375399,375616..375618,
375622..375624,375709..375711,375775..375777,
375781..375783))
/gene="hxlA"
/locus_tag="BSU03460"
/note="active site"
/db_xref="CDD:240077"
misc_feature complement(order(375385..375393,375397..375399,
375445..375447,375463..375465,375526..375528,
375541..375543,375583..375585,375601..375609,
375676..375681,375688..375690,375769..375771))
/gene="hxlA"
/locus_tag="BSU03460"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240077"
misc_feature complement(order(375622..375624,375709..375711))
/gene="hxlA"
/locus_tag="BSU03460"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:240077"
gene 376032..376394
/gene="hxlR"
/locus_tag="BSU03470"
/db_xref="GeneID:938311"
CDS 376032..376394
/gene="hxlR"
/locus_tag="BSU03470"
/function="16.3: Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15978081; Product type r:
regulator"
/codon_start=1
/transl_table=11
/product="positive regulator of hxlAB expression"
/protein_id="NP_388229.2"
/db_xref="GI:255767104"
/db_xref="GeneID:938311"
/translation="MSRMDDKRFNCEKELTLAVIGGKWKMLILWHLGKEGTKRFNELK
TLIPDITQKILVNQLRELEQDMIVHREVYPVVPPKVEYSLTPHGESLMPILEAMYEWG
KGYMELIDIDKNVMKESL"
misc_feature 376032..376385
/gene="hxlR"
/locus_tag="BSU03470"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1733"
/db_xref="CDD:224647"
misc_feature 376086..376361
/gene="hxlR"
/locus_tag="BSU03470"
/note="HxlR-like helix-turn-helix; Region: HxlR;
pfam01638"
/db_xref="CDD:201897"
gene 376968..387731
/gene="srfAA"
/locus_tag="BSU03480"
/db_xref="GeneID:938306"
CDS 376968..387731
/gene="srfAA"
/locus_tag="BSU03480"
/function="16.8: Protect"
/function="16.5: Explore"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15066026, 16166527,
8288534, 8441623; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="surfactin synthetase"
/protein_id="NP_388230.2"
/db_xref="GI:255767105"
/db_xref="GeneID:938306"
/translation="MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDY
VLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQ
WSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYL
ELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASA
GGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTF
MGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLI
NDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTG
KLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARA
GGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGV
GPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTES
KVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQV
HHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGA
ALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFK
EAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQ
PEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEY
LGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSE
FAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAP
RNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLF
EHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPA
AAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGR
SDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELAR
IYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPV
QSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPS
AGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVE
DLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDE
GIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQF
NPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGA
GEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQR
KLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIV
THANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLD
MARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQT
VGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAG
IAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGR
IDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQE
MREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTE
QKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTV
EGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLT
GELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERI
VSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGE
TLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFE
GDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRS
QADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQV
QRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTF
VLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKA
LPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDD
RVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISV
PDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVE
HHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLD
IVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNY
GPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLA
RGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIEL
SEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIP
AFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEV
GVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQ
GPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDAL
RMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGG
LLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSF
AEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTA
EETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTIS
RTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDV
AFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLT
MSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDK
LMEIF"
misc_feature 376971..377876
/gene="srfAA"
/locus_tag="BSU03480"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:216052"
misc_feature 377658..379619
/gene="srfAA"
/locus_tag="BSU03480"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:223951"
misc_feature 377940..378218
/gene="srfAA"
/locus_tag="BSU03480"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:222359"
misc_feature 378393..379835
/gene="srfAA"
/locus_tag="BSU03480"
/note="The adenylation domain of nonribosomal peptide
synthetases (NRPS); Region: A_NRPS; cd05930"
/db_xref="CDD:213296"
misc_feature order(378777..378779,378786..378803,378807..378812)
/gene="srfAA"
/locus_tag="BSU03480"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213296"
misc_feature order(378786..378791,379137..379142,379215..379232,
379302..379304,379497..379499,379533..379535,
379542..379544,379815..379817)
/gene="srfAA"
/locus_tag="BSU03480"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213296"
misc_feature 379899..380087
/gene="srfAA"
/locus_tag="BSU03480"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:215989"
misc_feature 380139..381005
/gene="srfAA"
/locus_tag="BSU03480"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:216052"
misc_feature 380787..382742
/gene="srfAA"
/locus_tag="BSU03480"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:223951"
misc_feature 381066..381338
/gene="srfAA"
/locus_tag="BSU03480"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:222359"
misc_feature 381522..382952
/gene="srfAA"
/locus_tag="BSU03480"
/note="The adenylation domain of nonribosomal peptide
synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C); Region:
A_NRPS_Srf_like; cd12117"
/db_xref="CDD:213325"
misc_feature order(381924..381926,381933..381950,381954..381959)
/gene="srfAA"
/locus_tag="BSU03480"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213325"
misc_feature order(381933..381938,382275..382280,382341..382358,
382425..382427,382620..382622,382656..382658,
382665..382667,382932..382934)
/gene="srfAA"
/locus_tag="BSU03480"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213325"
misc_feature 383016..383210
/gene="srfAA"
/locus_tag="BSU03480"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:215989"
misc_feature 383256..384125
/gene="srfAA"
/locus_tag="BSU03480"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:216052"
misc_feature 383907..385829
/gene="srfAA"
/locus_tag="BSU03480"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:223951"
misc_feature 384192..384458
/gene="srfAA"
/locus_tag="BSU03480"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:222359"
misc_feature 384645..386039
/gene="srfAA"
/locus_tag="BSU03480"
/note="The adenylation domain of nonribosomal peptide
synthetases (NRPS); Region: A_NRPS; cd05930"
/db_xref="CDD:213296"
misc_feature order(385053..385055,385062..385079,385083..385088)
/gene="srfAA"
/locus_tag="BSU03480"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213296"
misc_feature order(385062..385067,385398..385403,385443..385460,
385518..385520,385713..385715,385746..385748,
385755..385757,386019..386021)
/gene="srfAA"
/locus_tag="BSU03480"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213296"
misc_feature 386100..386291
/gene="srfAA"
/locus_tag="BSU03480"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:215989"
misc_feature 386328..387242
/gene="srfAA"
/locus_tag="BSU03480"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:216052"
misc_feature 387009..>387635
/gene="srfAA"
/locus_tag="BSU03480"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:223951"
misc_feature 387252..387659
/gene="srfAA"
/locus_tag="BSU03480"
/note="non-ribosomal peptide synthase domain TIGR01720;
Region: NRPS-para261"
/db_xref="CDD:233545"
gene 387744..398495
/gene="srfAB"
/locus_tag="BSU03490"
/db_xref="GeneID:938303"
CDS 387744..398495
/gene="srfAB"
/locus_tag="BSU03490"
/function="16.5: Explore"
/function="16.8: Protect"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 15066026, 16166527,
16553878, 17227471; Product type e: enzyme"
/codon_start=1
/transl_table=11
/product="surfactin synthetase"
/protein_id="NP_388231.2"
/db_xref="GI:255767106"
/db_xref="GeneID:938303"
/translation="MSKKSIQKVYALTPMQEGMLYHAMLDPHSSSYFTQLELGIHGAF
DLEIFEKSVNELIRSYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISHADENRQKE
HIERYKQDVQRQGFNLAKDILFKVAVFRLAADQLYLVWSNHHIMMDGWSMGVLMKSLF
QNYEALRAGRTPANGQGKPYSDYIKWLGKQDNEEAESYWSERLAGFEQPSVLPGRLPV
KKDEYVNKEYSFTWDETLVARIQQTANLHQVTGPNLFQAVWGIVLSKYNFTDDVIFGT
VVSGRPSEINGIETMAGLFINTIPVRVKVERDAAFADIFTAVQQHAVEAERYDYVPLY
EIQKRSALDGNLLNHLVAFENYPLDQELENGSMEDRLGFSIKVESAFEQTSFDFNLIV
YPGKTWTVKIKYNGAAFDSAFIERTAEHLTRMMEAAVDQPAAFVREYGLVGDEEQRQI
VEVFNSTKAELPEGMAVHQVFEEQAKRTPASTAVVYEGTKLTYRELNAAANRLARKLV
EHGLQKGETAAIMNDRSVETVVGMLAVLKAGAAYVPLDPALPGDRLRFMAEDSSVRMV
LIGNSYTGQAHQLQVPVLTLDIGFEESEAADNLNLPSAPSDLAYIMYTSGSTGKPKGV
MIEHKSILRLVKNAGYVPVTEEDRMAQTGAVSFDAGTFEVFGALLNGAALYPVKKETL
LDAKQFAAFLREQSITTMWLTSPLFNQLAAKDAGMFGTLRHLIIGGDALVPHIVSKVK
QASPSLSLWNGYGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIG
APGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGR
IDNQVKVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADREVAVSE
LRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKELPAPQSEAVQPEYAAPKTESEK
KLAEIWEGILGVKAGVTDNFFMIGGHSLKAMMMTAKIQEHFHKEVPIKVLFEKPTIQE
LALYLEENESKEEQTFEPIRQASYQQHYPVSPAQRRMYILNQLGQANTSYNVPAVLLL
EGEVDKDRLENAIQQLINRHEILRTSFDMIDGEVVQTVHKNISFQLEAAKGREEDAEE
IIKAFVQPFELNRAPLVRSKLVQLEEKRHLLLIDMHHIITDGSSTGILIGDLAKIYQG
ADLELPQIHYKDYAVWHKEQTNYQKDEEYWLDVFKGELPILDLPADFERPAERSFAGE
RVMFGLDKQITAQIKSLMAETDTTMYMFLLAAFNVLLSKYASQDDIIVGSPTAGRTHP
DLQGVPGMFVNTVALRTAPAGDKTFAQFLEEVKTASLQAFEHQSYPLEELIEKLPLTR
DTSRSPLFSVMFNMQNMEIPSLRLGDLKISSYSMLHHVAKFDLSLEAVEREEDIGLSF
DYATALFKDETIRRWSRHFVNIIKAAAANPNVRLSDVDLLSSAETAALLEERHMTQIT
EATFAALFEKQAQQTPDHSAVKAGGNLLTYRELDEQANQLAHHLRAQGAGNEDIVAIV
MDRSAEVMVSILGVMKAGAAFLPIDPDTPEERIRYSLEDSGAKFAVVNERNMTAIGQY
EGIIVSLDDGKWRNESKERPSSISGSRNLAYVIYTSGTTGKPKGVQIEHRNLTNYVSW
FSEEAGLTENDKTVLLSSYAFDLGYTSMFPVLLGGGELHIVQKETYTAPDEIAHYIKE
HGITYIKLTPSLFHTIVNTASFAKDANFESLRLIVLGGEKIIPTDVIAFRKMYGHTEF
INHYGPTEATIGAIAGRVDLYEPDAFAKRPTIGRPIANAGALVLNEALKLVPPGASGQ
LYITGQGLARGYLNRPQLTAERFVENPYSPGSLMYKTGDVVRRLSDGTLAFIGRADDQ
VKIRGYRIEPKEIETVMLSLSGIQEAVVLAVSEGGLQELCAYYTSDQDIEKAELRYQL
SLTLPSHMIPAFFVQVDAIPLTANGKTDRNALPKPNAAQSGGKALAAPETALEESLCR
IWQKTLGIEAIGIDDNFFDLGGHSLKGMMLIANIQAELEKSVPLKALFEQPTVRQLAA
YMEASAVSGGHQVLKPADKQDMYPLSSAQKRMYVLNQLDRQTISYNMPSVLLMEGELD
ISRLRDSLNQLVNRHESLRTSFMEANGEPVQRIIEKAEVDLHVFEAKEDEADQKIKEF
IRPFDLNDAPLIRAALLRIEAKKHLLLLDMHHIIADGVSRGIFVKELALLYKGEQLPE
PTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLPLDYARPPVQSFKGDTI
RFRTGSETAKAVEKLLAETGTTLHMVLHAVFHVFLSKISGQRDIVIGSVTAGRTNADV
QDMPGMFVNTLALRMEAKEQQTFAELLELAKQTNLSALEHQEYPFEDLVNQLDLPRDM
SRNPLFNVMVTTENPDKEQLTLQNLSISPYEAHQGTSKFDLTLGGFTDENGIGLQLEY
ATDLFAKETAEKWSEYVLRLLKAVADNPNQPLSSLLLVTETEKQALLEAWKGKALPVP
TDKTVHQLFEETVQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGV
LTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSY
TGDVILLDGSRTILSLPLDENDEGNPETAVTAENLAYMIYTSGTTGQPKGVMVEHHAL
VNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDIVRL
NDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTE
NTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYL
NREDETAKRFVADPFVPGERMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIE
VQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPETADIEALKSTLKETLPDYMIPAFWV
TLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTD
NFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVE
GEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVY
REENGDIVQVYKPIGESKVSFEIVDLYGSDEEMLRSQIKLLANKLQSSLDLRNGPLLK
AEQYRTEAGDHLLIAVHHLVVDGVSWRILLEDFASGYMQAEKEESLVFPQKTNSFKDW
AEELAAFSQSAHLLQQAEYWSQIAAEQVSPLPKDCETEQRIVKDTSSVLCELTAEDTK
HLLTDVHQPYGTEINDILLSALGLTMKEWTKGAKIGINLEGHGREDIIPNVNISRTVG
WFTAQYPVVLDISDADASAVIKTVKENLRRIPDKGVGYGILRYFTETAETKGFTPEIS
FNYLGQFDSEVKTDFFEPSAFDMGRQVSGESEALYALSFSGMIRNGRFVLSCSYNEKE
FERATVEEQMERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGDIFDMLEENL
K"
misc_feature 387759..388661
/gene="srfAB"
