LOCUS NC_003037 1354226 bp DNA circular BCT 01-APR-2010
DEFINITION Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence.
ACCESSION NC_003037
VERSION NC_003037.1 GI:16262453
DBLINK Project: 19
KEYWORDS .
SOURCE Sinorhizobium meliloti 1021
ORGANISM Sinorhizobium meliloti 1021
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 1354226)
AUTHORS Barnett,M.J., Fisher,R.F., Jones,T., Komp,C., Abola,A.P.,
Barloy-Hubler,F., Bowser,L., Capela,D., Galibert,F., Gouzy,J.,
Gurjal,M., Hong,A., Huizar,L., Hyman,R.W., Kahn,D., Kahn,M.L.,
Kalman,S., Keating,D.H., Palm,C., Peck,M.C., Surzycki,R.,
Wells,D.H., Yeh,K.-C., Davis,R.W., Federspiel,N.A. and Long,S.R.
TITLE Nucleotide sequence and predicted functions of the entire
Sinorhizobium meliloti pSymA megaplasmid
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 98 (17), 9883-9888 (2001)
PUBMED 11481432
REFERENCE 2 (bases 1 to 1354226)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1354226)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE006469.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1354226
/organism="Sinorhizobium meliloti 1021"
/mol_type="genomic DNA"
/strain="1021"
/db_xref="taxon:266834"
/plasmid="pSymA"
gene 1353..4457
/gene="fdoG"
/locus_tag="SMa0002"
/db_xref="GeneID:1235225"
CDS 1353..4457
/gene="fdoG"
/locus_tag="SMa0002"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_except=(pos:1965..1967,aa:Sec)
/transl_table=11
/product="FdoG formate dehydrogenase-O alpha subunit"
/protein_id="NP_435247.1"
/db_xref="GI:16262454"
/db_xref="GeneID:1235225"
/translation="MEAVPMNVDLSRRSFLKLAGAGAAATSLGAMGFGEAEAAVVAHV
RPHKLTTTTETRNTCPYCSVACGVIIYSKGDLRKGEAADIIHIEGDADHPTNRGTLCP
KGAALKDFVKSPTRLQYPMHRKPGSDKFERISWEDAFDRIARLMKDDRDANFIAANAA
GVPVNRWTTVGMLAASATTNETAWATFKFAKALGIVGFDNQARVUHGPTVSSLGPTFG
RGAMTNSWTDIKNTDLVVVMGGNAAEAHPCGFKWVTEAKATRGAKLIVVDPRYTRTAS
VSDYYAPIRQGTDIAFLNGVMKYCIDNDKVQWDYMKAFTNASYLVKDGFGYQDGLFTG
YDAEKRDYDKSTWDYVLGDDGFVVTDPALQHPRCVWNLLKAHLAPYTPEMVERICGTP
KDKFLKVAEMISECSSPTKTMTSMYALGWTQHSSGSQNIRAMAMLQLILGNIGVRGGG
MNALRGHSNIQGLTDLGLMSHLLTGYLTMPTEKDVDFTTYMSTRQFKPLRPGQTSYWQ
NYRKFMVSFQKAMWGDAARIDNDWAFNYLSKLDVPAYDVLRVFELMYAGKVNGYICQG
FNPLLAFPNRDKNTKALSNLKWLVTMDPLDTETARFWENHGDFNPVDTASIQTEVFQL
PTTCFAEEEGSLTNSGRWLQWHWAGGTPPGEAKHDTYIVAQIFLRMKEMYRNEGGAFP
DPILNLSWDYADPNEPTPEELAKEINGRALTDLMDPANPMKVQVAAGKQILNFSQLRD
DGSTMCGCWIYSGNFNEQGNNMARRDNHDPDDTGAYLGWSFAWPLNRRTLYNRASADL
QGKPWDPSRKLLEWDGTKWAGYDVPDIAPTAKPDEIGPFIMNQEGTARLFSRGLMRDG
PFPAHMEPFESPVANVFNPKMRGNPVSRVFQTDVAQMGLSDEFPYAATSYRLTEHFHY
WTKHNRVNSALQPEFFVEISEELAEEKNIENGGWVRVWSKRGSVKAKAVVTKRIRPLM
CDGKPVHVVGIPLHWGFTGSAKKGLGPNSLAPFVGDANIETPEYKAFLVNIEPSTAPE
EATV"
misc_feature 1377..4424
/gene="fdoG"
/locus_tag="SMa0002"
/note="formate dehydrogenase, alpha subunit,
proteobacterial-type; Region: formate-DH-alph; TIGR01553"
/db_xref="CDD:162418"
misc_feature 1518..>2255
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_Formate-Dh-Na-like; cd02752"
/db_xref="CDD:73320"
misc_feature order(1527..1529,1533..1538,1548..1550,1653..1655,
2091..2096)
/gene="fdoG"
/locus_tag="SMa0002"
/note="[4Fe-4S] binding site; other site"
/db_xref="CDD:73320"
misc_feature <2478..>2786
/gene="fdoG"
/locus_tag="SMa0002"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and tungsten-...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:158783"
misc_feature <3033..4004
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_Formate-Dh-Na-like; cd02752"
/db_xref="CDD:73320"
misc_feature 4041..4427
/gene="fdoG"
/locus_tag="SMa0002"
/note="Formate dehydrogenase N, alpha subunit
(Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that
is a complex of three different subunits and is the...;
Region: MopB_CT_Formate-Dh-Na-like; cd02792"
/db_xref="CDD:30324"
misc_feature order(4065..4079,4083..4094,4305..4307,4350..4352,
4398..4403)
/gene="fdoG"
/locus_tag="SMa0002"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:30324"
gene 4454..5446
/gene="fdoH"
/locus_tag="SMa0005"
/db_xref="GeneID:1235226"
CDS 4454..5446
/gene="fdoH"
/locus_tag="SMa0005"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/note="glimmer prediction; similar to E. coli fdoH"
/codon_start=1
/transl_table=11
/product="FdoH formate dehydrogenase-O, beta subunit"
/protein_id="NP_435248.1"
/db_xref="GI:16262455"
/db_xref="GeneID:1235226"
/translation="MMDSPRTAVSNPPVQPMESNLTERDLVRRSATTELPPPERQLTP
VAKLIDVSKCIGCKACQSACVEWNDTHPGIGENVGYYTNPHDLTEDMFTLMRFTEWVN
PETDNLEWLIRKDGCMHCADPGCLKACPAPGAIVQYTNGIVDFVHENCIGCGYCIKGC
PFNIPRISKVDHRAYKCTLCSDRVAVGQGPACAKACPTQAIVFGTKEDMKKHAEHRIA
DLKSRGYTNAGLYDPPGVGGTHVMYVLHHSDKPHIYSDLPDDPKISAVVQAWKGVTKY
TGLAAMGLVAAGAILHGVFGRANRVQPEDEESAERLVDSAGAAGRTPDDKGQRS"
misc_feature 4526..5374
/gene="fdoH"
/locus_tag="SMa0005"
/note="Fe-S containing; Region: FDH-beta; TIGR01582"
/db_xref="CDD:162435"
misc_feature <4760..>5026
/gene="fdoH"
/locus_tag="SMa0005"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved alpha-; Region: HCP_like;
cl00255"
/db_xref="CDD:174071"
misc_feature 5240..5371
/gene="fdoH"
/locus_tag="SMa0005"
/note="Formate dehydrogenase N, transmembrane; Region:
Form-deh_trans; pfam09163"
/db_xref="CDD:150003"
gene 5424..6110
/gene="fdoI"
/locus_tag="SMa0007"
/db_xref="GeneID:1235227"
CDS 5424..6110
/gene="fdoI"
/locus_tag="SMa0007"
/EC_number="1.2.1.2"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/note="glimmer prediction; similar to E. coli fdoI"
/codon_start=1
/transl_table=11
/product="FdoI formate dehydrogenase-O,gamma subunit"
/protein_id="NP_435249.1"
/db_xref="GI:16262456"
/db_xref="GeneID:1235227"
/translation="MTKASDLEPEDAIHRGPPVTVDRYGPGKRVNHWITASSLILLAL
SGLAMFHPSLFFLTGLFGGGQNTRMLHPWIGVVLFFSFYIFFFQLWKANLFTRADMGW
FTGIRDVIGGHEDRLPEMGKYNAGQKVIFWAMALLIVALIITGVIIWDQYFYSYTSIE
TKRFAVLAHAVAAVLIICVFIVHVYAAFWTRGTFRAMTKGSVTGGWAWRHHRKWLKEL
AGRGRIDPAE"
misc_feature 5466..6107
/gene="fdoI"
/locus_tag="SMa0007"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria...; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:174425"
gene 6149..7069
/gene="fdhE"
/locus_tag="SMa0009"
/db_xref="GeneID:1235228"
CDS 6149..7069
/gene="fdhE"
/locus_tag="SMa0009"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_table=11
/product="FdhE formate formation"
/protein_id="NP_435250.1"
/db_xref="GI:16262457"
/db_xref="GeneID:1235228"
/translation="MSVSPVQPDPSVIGGVPKAPFVLKPNLARLFNDRASRFEALAQG
SHLAPYLNFLAGITRIQSELVSALPPPEPVPADRVERARANAMPPIDRAAMGGSPDCR
EVLQQFFEKAEALEKPAAAAEALAQVRTADEEMLTWMIGNVMADDLPVESLAHHLYVA
AAMQIQAARLAAGLDGSRLVPIRVGVCPACGGRPVASMVIGFHGAEGARYASCSCCAT
MWNEVRVKCLACGSTKGIGYQAVETGDEEATVKAEVCDTCNSWMKILYQNKNPSLDVV
ADDVASLGLDLLMKDTEYKRAGFDPFLMGY"
misc_feature 6149..7066
/gene="fdhE"
/locus_tag="SMa0009"
/note="Uncharacterized protein involved in formate
dehydrogenase formation [Posttranslational modification,
protein turnover, chaperones]; Region: FdhE; COG3058"
/db_xref="CDD:32872"
misc_feature 6152..7063
/gene="fdhE"
/locus_tag="SMa0009"
/note="formate dehydrogenase accessory protein FdhE;
Provisional; Region: PRK03564; cl11689"
/db_xref="CDD:175360"
gene 7074..8474
/gene="selA"
/locus_tag="SMa0011"
/db_xref="GeneID:1235229"
CDS 7074..8474
/gene="selA"
/locus_tag="SMa0011"
/EC_number="2.9.1.1"
/function="Small molecule metabolism; aa-tRNAs"
/note="catalyzes the formation of
selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and
L-selenophosphate in selenoprotein biosynthesis"
/codon_start=1
/transl_table=11
/product="selenocysteine synthase"
/protein_id="NP_435251.1"
/db_xref="GI:16262458"
/db_xref="GeneID:1235229"
/translation="MSGPVDLRALPSVDQMLNAAAVSPLVEQHGRAVVTDELRKVLGE
VRLAVRSGGALPGKDGIVAALLSRLDDRSRSNLRPLFNLTGTVLHTNLGRALLAQEAV
DAAVDAMREAAALEFDLDSGGRGERDSHLRELLCELTGAEDATVVNNNAAAVLIALNS
VGAGRQAIVSRGELIEIGGAFRMPDIMERAGVDLVEVGTTNRTHAKDYVKAIGPETAL
ILKVHTSNYRIEGFTAEVPGAELAAIAHERGVVLLNDLGSGSLVDLSRYGLGREPTVR
EAVAEGADLVTFSGDKLLGGPQAGFIVGRRDLIAEINRNPLKRALRVDKIRIAATAAT
LKLYRDPDRLASRLPTLFMLSRVQAEVRAQAERLAPQVGAMLAPSGYAVEVCSCSSQI
GSGALPVDTIPSAGLRIVGSSGSALEALAALFRSLSRPILGRLRDGALVLDLRCLSDE
AEFLKTLSEGSGDAVA"
misc_feature 7092..8447
/gene="selA"
/locus_tag="SMa0011"
/note="seryl-tRNA(sec) selenium transferase; Region: selA;
TIGR00474"
/db_xref="CDD:161897"
misc_feature 7092..7211
/gene="selA"
/locus_tag="SMa0011"
/note="Selenocysteine synthase N terminal; Region:
Se-cys_synth_N; pfam12390"
/db_xref="CDD:152825"
misc_feature <7635..>8009
/gene="selA"
/locus_tag="SMa0011"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:174109"
misc_feature order(7740..7742,7836..7838,7848..7850,7938..7940,
7947..7949)
/gene="selA"
/locus_tag="SMa0011"
/note="pyridoxal 5'-phosphate binding pocket; other site"
/db_xref="CDD:99742"
misc_feature 7947..7949
/gene="selA"
/locus_tag="SMa0011"
/note="catalytic residue; other site"
/db_xref="CDD:99742"
gene 8383..9255
/locus_tag="SMa0013"
/db_xref="GeneID:1235230"
CDS 8383..9255
/locus_tag="SMa0013"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435252.2"
/db_xref="GI:193782525"
/db_xref="GeneID:1235230"
/translation="MVRWFWTCAVCPMRRNSSKPCPRVAAMRWLERLRGNKPQTAPVA
DPMAEALARAQAGDYGSALRIWEPLARAGVARAQNNIGACFAEGLGVPENRELACKWL
RLAAEAGDPVGQRNYAALHMQGLAGTDADYGIAAEYYRRAAEKGDAPAQDMLSWLLLE
GEIMTADPLEARRWAECAAEAGIASSMTRLGMLHHNALGVERDAQKAVYWWLKAAERG
DADAQAMLGAACHMGAGTIRNGVTALVWLIRATEGGSTLAKPFMGPVRDSLSPAEIQE
AERRAQEPLSRRAP"
misc_feature 8440..9090
/locus_tag="SMa0013"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 8605..8712
/locus_tag="SMa0013"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:155078"
misc_feature 8932..9039
/locus_tag="SMa0013"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:155078"
gene 9252..11252
/gene="selB"
/locus_tag="SMa0015"
/db_xref="GeneID:1235231"
CDS 9252..11252
/gene="selB"
/locus_tag="SMa0015"
/function="Small molecule metabolism; aa-tRNAs"
/codon_start=1
/transl_table=11
/product="Selenocysteine-specific elongation factor"
/protein_id="NP_435253.1"
/db_xref="GI:16262460"
/db_xref="GeneID:1235231"
/translation="MIVGTAGHIDHGKTTLVKALTGVDTDRLKEEKARGITIDLGFAY
ARFAKDAVTGFVDVPGHERFIHTMLAGAGGIDYAMLVVAADDGIKPQTLEHLAILDLL
GVSRGLVAITKADLADPARLENLTDEIGAVLSSTSLRDAEILPVSVAAGQGIELLKER
LAAAECATAASAVGGRFRLAVDRSFTLSGAGTVVTGTVLSGSVGVGDQVTVSPAGRSA
RVRSIHAQNQRAERGFAGQRCALNLAGEGISKDAITRGDMVVDPHLHAPSDRLDADLS
VLESETKPIGEWFSARFHHASAETGIRIVPLEGPLLPGERRRVQLVLDRPIAAAVGDR
FILRDVSARRTIGGGRLLDLRAPARKRRSPERLSYLQAASLSHAGEALAALLDVPPFL
VDLDVFARDRALSEAELQNAIRSASAEVIEGSAVRHALSKRQRAAFSDEVQRVLSAFH
VENPDLQGIGRERLRLQVTPRLPPPAFLVALRAEQTAGRLVLEGAFVRLPGHEVRLSE
KEEELYARILPHLEGEERFRPPRVRDFAEALGVDEREIRRILKLCARLGRVDQIRHDH
FFTRQTTAEMVAIIRQVAANAERGEFSAGLFRDRVNNGRKVAIEILEFFDRQGVTIRH
GDVRRVNPHRLDLYEGPVPEADEGRGSSPVERPDFKFYRAGS"
misc_feature 9252..11129
/gene="selB"
/locus_tag="SMa0015"
/note="selenocysteinyl-tRNA-specific translation factor;
Provisional; Region: PRK10512"
/db_xref="CDD:170489"
misc_feature 9252..9734
/gene="selB"
/locus_tag="SMa0015"
/note="SelB subfamily. SelB is an elongation factor
needed for the co-translational incorporation of
selenocysteine. Selenocysteine is coded by a UGA stop
codon in combination with a specific downstream mRNA
hairpin. In bacteria, the C-terminal part of...; Region:
SelB; cd04171"
/db_xref="CDD:133371"
misc_feature 9270..9293
/gene="selB"
/locus_tag="SMa0015"
/note="G1 box; other site"
/db_xref="CDD:133371"
misc_feature order(9273..9275,9279..9281,9291..9296,9303..9305,
9312..9317,9372..9377,9432..9437,9504..9509,9621..9623,
9633..9635)
/gene="selB"
/locus_tag="SMa0015"
/note="putative GEF interaction site; other site"
/db_xref="CDD:133371"
misc_feature order(9279..9296,9585..9590,9594..9596,9690..9698)
/gene="selB"
/locus_tag="SMa0015"
/note="GTP/Mg2+ binding site; other site"
/db_xref="CDD:133371"
misc_feature 9327..9374
/gene="selB"
/locus_tag="SMa0015"
/note="Switch I region; other site"
/db_xref="CDD:133371"
misc_feature 9360..9362
/gene="selB"
/locus_tag="SMa0015"
/note="G2 box; other site"
/db_xref="CDD:133371"
misc_feature 9420..9431
/gene="selB"
/locus_tag="SMa0015"
/note="G3 box; other site"
/db_xref="CDD:133371"
misc_feature 9426..9482
/gene="selB"
/locus_tag="SMa0015"
/note="Switch II region; other site"
/db_xref="CDD:133371"
misc_feature 9585..9596
/gene="selB"
/locus_tag="SMa0015"
/note="G4 box; other site"
/db_xref="CDD:133371"
misc_feature 9690..9698
/gene="selB"
/locus_tag="SMa0015"
/note="G5 box; other site"
/db_xref="CDD:133371"
misc_feature 9780..10034
/gene="selB"
/locus_tag="SMa0015"
/note="selB_II: this subfamily represents the domain of
elongation factor SelB, homologous to domain II of EF-Tu.
SelB may function by replacing EF-Tu. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires...; Region: selB_II; cd03696"
/db_xref="CDD:58087"
misc_feature 10017..10301
/gene="selB"
/locus_tag="SMa0015"
/note="This family represents the domain of elongation
factor SelB, homologous to domain III of EF-Tu. SelB may
function by replacing EF-Tu. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several elements:...; Region:
selB_III; cd04094"
/db_xref="CDD:58076"
misc_feature 10575..10748
/gene="selB"
/locus_tag="SMa0015"
/note="Elongation factor SelB, winged helix; Region:
SelB-wing_2; pfam09106"
/db_xref="CDD:149970"
misc_feature 10998..11141
/gene="selB"
/locus_tag="SMa0015"
/note="Elongation factor SelB, winged helix; Region:
SelB-wing_3; pfam09107"
/db_xref="CDD:149971"
gene 11506..12063
/locus_tag="SMa0017"
/db_xref="GeneID:1235232"
CDS 11506..12063
/locus_tag="SMa0017"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435254.1"
/db_xref="GI:16262461"
/db_xref="GeneID:1235232"
/translation="MAAADDGRNGGGLRQRKARRGLPQARRNHLSGTTRIGKRQAQIL
GSGGLGPSNEPRGGCCMPLGREIPSEDGGENSRSKRSAWGRRQKTMSLTTAFIAELIR
AANEVERLTPYEISRLLDRSVDTIRDMRRQTGIAASHRARDVVIDLQLASARARDLSA
AETRDVLLDAADIIRTLKIVLDGKE"
gene complement(12259..12546)
/locus_tag="SMa5000"
/db_xref="GeneID:6435249"
CDS complement(12259..12546)
/locus_tag="SMa5000"
/note="Has some similarity to S; meliloti SMa1907 and a
group of conserved hypothetical proteins; Possible protein
fragment created by insertion of the adjacent insertion
element, TRm2011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000327.1"
/db_xref="GI:193782526"
/db_xref="GeneID:6435249"
/translation="MSSNVSIISPWNMEFIRSVLGEAGYNAKLLVDDPRSFETAELLV
TKLFLAGEDSRPGLAAKLECQLGKAGGYRRPPGSSLARYAIQGLPSELQFS"
repeat_region 12658..13716
/standard_name="ISRm2011-2/ISRm11"
/note="SMa3000; predicted by homology"
/rpt_family="ISRm2011-2/ISRm11"
gene 12754..13161
/locus_tag="SMa0018"
/db_xref="GeneID:1235233"
CDS 12754..13161
/locus_tag="SMa0018"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm2011-2a transposase"
/protein_id="NP_435255.1"
/db_xref="GI:16262462"
/db_xref="GeneID:1235233"
/translation="MARPFSNDLRERVVDAVTGEGLSCRAAAKRFGIGISTAIDWVRR
FRETGSAAPGQMGGHKPRKLSGPHRAWLLCRCRERDFTLHGLVAELSERGLKVDYRAV
WTFVHEEGLSYKKRRWSPANGSGPTSPATGHDG"
misc_feature 12754..13158
/locus_tag="SMa0018"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3415"
/db_xref="CDD:33221"
gene 13227..13700
/locus_tag="SMa0020"
/db_xref="GeneID:1235234"
CDS 13227..13700
/locus_tag="SMa0020"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm2011-2b transposase"
/protein_id="NP_435256.1"
/db_xref="GI:16262463"
/db_xref="GeneID:1235234"
/translation="MAPLRGWAPRGERLVGYAPFGHWNTMTFVAALRADRVSAPFILD
GPINGERFRIYVQQVLVPELKAGDIVILDNLGSHKGQEIRAAIRKAGARLFFLPKYSP
DLNPIEKLFAKIKHWLREAQARSRDAIHDELRHILQAVTPQECAAYFKEAGYERA"
misc_feature 13299..13688
/locus_tag="SMa0020"
/note="Integrase core domain; Region: rve; cl01316"
/db_xref="CDD:154329"
gene complement(14450..15094)
/locus_tag="SMa0021"
/db_xref="GeneID:1235235"
CDS complement(14450..15094)
/locus_tag="SMa0021"
/function="Elements of external origin; Transposon-related
functions"
/note="glimmer prediction, with response regulator
receiver domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435257.1"
/db_xref="GI:16262464"
/db_xref="GeneID:1235235"
/translation="MYRLYNHAIARFSLDCFEGLTGDKTCRLKAQAWLIAELHQLGYR
DMPQKRCCAYRGLRHSYRKIAKEPRSEQTSSCEEADMKPATILLAEDEALLLLDYEAA
LADAGFVVVAVARGGKAIEVWRSADSEVAGVATDIRFYELPNGWSVARVAREIYPGIP
IVYGTGHGALEWRSRGVANSILLEKPFALAQLVTAVSELLNEPVLLSVAPDPNP"
misc_feature complement(14495..>14698)
/locus_tag="SMa0021"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems...; Region: REC;
cl09944"
/db_xref="CDD:175054"
misc_feature complement(order(14537..14542,14600..14602,14660..14662,
14687..14689))
/locus_tag="SMa0021"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(14687..14689)
/locus_tag="SMa0021"
/note="phosphorylation site"
/db_xref="CDD:29071"
misc_feature complement(order(14660..14665,14666..14671))
/locus_tag="SMa0021"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(14534..14542)
/locus_tag="SMa0021"
/note="dimerization interface; other site"
/db_xref="CDD:29071"
gene 15716..15807
/gene="selC"
/locus_tag="SMa0022"
/note="selenocysteine tRNA in FdH cluster"
/db_xref="GeneID:1235236"
tRNA 15716..15807
/gene="selC"
/locus_tag="SMa0022"
/product="tRNA-Sec"
/note="SMA0022"
/db_xref="GeneID:1235236"
gene 15826..16209
/locus_tag="SMa5014"
/db_xref="GeneID:6435250"
CDS 15826..16209
/locus_tag="SMa5014"
/note="Similar to hypothetical protein from XautDRAFT_0850
[Xanthobacter autotrophicus Py2]"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000328.1"
/db_xref="GI:193782527"
/db_xref="GeneID:6435250"
/translation="MTAETPGTDFDDWVVSTYRDVGSFTMLFVLLRIGDTSVDLLRSA
YLHVVGDELRWPDMVQLFRGAGVEWSGAVFYRAGREGLVEDGEAKSRLASLVFKLNED
RSLISEGDLFNADGLRLTIEEIKPH"
gene complement(16251..17318)
/locus_tag="SMa0025"
/db_xref="GeneID:1235237"
CDS complement(16251..17318)
/locus_tag="SMa0025"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction, C-terminus similar to
hypothetical protein HI1048 - Haemophilus influenzae
(strain Rd KW20) with transglutaminase-like superfamily
domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435258.2"
/db_xref="GI:193782528"
/db_xref="GeneID:1235237"
/translation="MLNRRRFLTNAATAAAATLWVSKGGMQARAEEAGNGSPWRRFEI
ITKVDLQPAEGPAQLWLPVVRSAGDYQKADAPLWVSNSTDIRMEKDPSSGADILRVMW
EDEPRRVIEVTQHVATRDRRVTSKIAATEAELQHELRGTPSMPVDGIVKTTAMRIVEG
RDRAEDRARAIYDWVIDNTFRDANIDGCGVGNARDMLETGYFGGKCADISSLFVSLAR
AAGLPARDVFGIRVADSADFKSLGRSGDITKAQHCRAEVYLDAHGWVPVDPADVRKVV
LEENLPLDNPAVRAFREKAYGNWEMNWVGYNTARDLVLPGGELRQGFLMYPAAVTSRG
ELDCLNPQTFAYSITSREITA"
misc_feature complement(16362..17234)
/locus_tag="SMa0025"
/note="Transglutaminase-like enzymes, putative cysteine
proteases [Amino acid transport and metabolism]; Region:
COG1305"
/db_xref="CDD:31496"
misc_feature complement(16512..16868)
/locus_tag="SMa0025"
/note="Transglutaminase-like superfamily; Region:
Transglut_core; cl10469"
/db_xref="CDD:158873"
gene complement(17424..17852)
/locus_tag="SMa0026"
/db_xref="GeneID:1235238"
CDS complement(17424..17852)
/locus_tag="SMa0026"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435259.1"
/db_xref="GI:16262466"
/db_xref="GeneID:1235238"
/translation="MEQAFPNIVGGDEKEIAMSNLAPTRPSACVLAAFCLLIALAPNP
ASAQNTNERADCAAAAGKAEPATPPDRASADGTAPGNSGSTGWTGGTGGAHIGTNPQG
ATAGSTTWQPPTARGIDLATAPEIPAPETAAPGTQTPTDC"
gene complement(17865..18914)
/gene="selD"
/locus_tag="SMa0028"
/db_xref="GeneID:1235239"
CDS complement(17865..18914)
/gene="selD"
/locus_tag="SMa0028"
/EC_number="2.7.9.3"
/function="Small molecule metabolism; Global functions"
/note="catalyzes the formation of selenophosphate from
selenide and ATP"
/codon_start=1
/transl_table=11
/product="selenophosphate synthetase"
/protein_id="NP_435260.1"
/db_xref="GI:16262467"
/db_xref="GeneID:1235239"
/translation="MNTLAPRLTDLAHGGGCGCKLAPSVLQQLLANQPAARPFAQLLV
GNDMADDAAVWQVDDNTCVIATTDFFMPIVDDPRDFGRIAATNAISDVYAMGGKPILA
LAIVGMPINKLDSTTIAKILEGGASICAEAGIPVAGGHSIDSVEPIYGLAVIGLCHPS
EVRRNGGVKAGDALILTKGIGVGIYSAAIKKNALPPGCYEEMIGSTTLLNRIGADLAA
DPDVHALTDVTGFGVLGHGLEMARASQLSLTLRLSAIPFLSQAYMLAEQGFITGASGR
NWASYGADVVLPDDLPDWQRLLLADPQTSGGLLVACAPEKAGALVEKVRLAGYPLAGI
VGTAAAGAAQIKVIS"
misc_feature complement(17922..18914)
/gene="selD"
/locus_tag="SMa0028"
/note="selenophosphate synthetase; Provisional; Region:
PRK00943"
/db_xref="CDD:167111"
misc_feature complement(17925..18893)
/gene="selD"
/locus_tag="SMa0028"
/note="Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and eukaryotic
organisms for synthesis of Secys-tRNA, the precursor of
selenocysteine in selenoenzymes. The...; Region: SelD;
cd02195"
/db_xref="CDD:100031"
misc_feature complement(order(18198..18200,18459..18461,18471..18476,
18495..18497,18594..18596,18603..18605,18612..18614,
18642..18644,18708..18710,18714..18716,18720..18731))
/gene="selD"
/locus_tag="SMa0028"
/note="dimerization interface; other site"
/db_xref="CDD:100031"
misc_feature complement(order(18495..18503,18642..18644,18654..18656))
/gene="selD"
/locus_tag="SMa0028"
/note="putative ATP binding site; other site"
/db_xref="CDD:100031"
gene complement(19209..19436)
/locus_tag="SMa0031"
/db_xref="GeneID:1235240"
CDS complement(19209..19436)
/locus_tag="SMa0031"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435261.1"
/db_xref="GI:16262468"
/db_xref="GeneID:1235240"
/translation="MSEWIDFERWPDCKRMERPGIVFEVTNGDQTLLTGCVVPLPLPS
DWVAHPLRFRAVPQPRPRHSSPLPKPAGPQQ"
gene complement(19453..21108)
/locus_tag="SMa0034"
/db_xref="GeneID:1235241"
CDS complement(19453..21108)
/locus_tag="SMa0034"
/EC_number="3.4.24.40"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/note="glimmer prediction; partially similar to serralysin
(Serratia protease) precursor"
/codon_start=1
/transl_table=11
/product="protease"
/protein_id="NP_435262.1"
/db_xref="GI:16262469"
/db_xref="GeneID:1235241"
/translation="MPAATTYATTGNAYIDGLLGDWKWGIKDFTFSFPTSASFYSAGY
GNGEPLKGFAALSGAQQAATRAALDQFSSVANVTFTEITESATKHADLRLASSDAPST
AWAYFPSTAAEGGDAWFNKSSGHYSRPVKGNYAYVTFLHETGHALGLEHAHEGNVMPV
NRDSMEYTVMSYRSYVGASTTTGYTNETWGYAQSLMMYDIAALQHMYGADFTTHSENT
TYRWSPTSGEMFVNGMGQGAPGGNKILLTVWDGGGTDTYDFSNYTTALKVDLRPGEWT
TTSAAQLAKLHYDGSKVAIGNIANALQYQGDTRSLIENAKGGAGNDAITGNAAANALW
GNGGNDRLIGGDGNDNLAGGAGADRLDGGNGTDLANYSNATAGMVADLYSPGSNTGEA
AGDTYVSIERLYGSAFNDTLRGDNRANLLNGLAGNDMLNGRDGNDTLIGGNGADRLIG
GGGADTFVFQTTAQSAPAFRDVIDDFASGVDRMDLRSIDASSKAIGDQAFLFIGSSAF
HGKAGELNFRSGIVSGDVNGDGLADFQIRVMNLSALSGSDFLL"
misc_feature complement(20485..21024)
/locus_tag="SMa0034"
/note="Zinc-dependent metalloprotease, serralysin_like
subfamily. Serralysins and related proteases are important
virulence factors in pathogenic bacteria. They may be
secreted into the medium via a mechanism found in
gram-negative bacteria, that does not...; Region:
ZnMc_serralysin_like; cd04277"
/db_xref="CDD:58577"
misc_feature complement(order(20656..20658,20674..20676,20683..20688))
/locus_tag="SMa0034"
/note="active site"
/db_xref="CDD:58577"
misc_feature complement(<20137..20484)
/locus_tag="SMa0034"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; cl12108"
/db_xref="CDD:164328"
misc_feature complement(19456..>19806)
/locus_tag="SMa0034"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; cl12108"
/db_xref="CDD:164328"
gene 21429..23051
/locus_tag="SMa0036"
/db_xref="GeneID:1235242"
CDS 21429..23051
/locus_tag="SMa0036"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similar to ABC transporter,
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435263.1"
/db_xref="GI:16262470"
/db_xref="GeneID:1235242"
/translation="MIRIENISKSNSHRILYIEASAALNRGEKIGLVGPNGAGKTTLF
RMITGQELPDEGQVAVEKGMTIGYFDQDVGEMAGRSAVAEVMEGAGPISAVAAELHEL
ETAMSDPDRMDEMDAIVERYGEVQARYEELDGYALEGRAREVLAGLSFSQEMMDGDVA
KLSGGWKMRVALARILLMRPDVMLLDEPSNHLDLESLIWLENFLKGYDGALLMTSHDR
EFMNRIVTKIIEIDGGALTTYSGDYGFYDEQRALNARQQQAQFERQQAMLAKEIKFIE
RFKARASHASQVQSRVKKLEKIDRVEPPRRRQTVAFEFLPAPRSGEDVVNLKSVHKTY
GSRTIYDGLDFMVRRRERWCIMGINGAGKSTLLKLVTGTTNPDKGSVSLGASVKLGYF
AQHSMDLLDGESTILQWLEERFPKAGQAPLRALAGCFGFSGDDVEKRCRVLSGGEKAR
LVMAAMLFDPPNFLVLDEPTNHLDLDTKEMLIKALSAYQGTMLFVSHDRRFLSALSNR
VLELTPDGINQYGGGYSEYVERTGQEAPGLRG"
misc_feature 21429..23030
/locus_tag="SMa0036"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:30834"
misc_feature 21432..>21686
/locus_tag="SMa0036"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by...; Region: ABCF_EF-3;
cd03221"
/db_xref="CDD:72980"
misc_feature 21657..>22016
/locus_tag="SMa0036"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop NTPase; cl09099"
/db_xref="CDD:158411"
misc_feature order(21657..21659,21663..21671,21840..21842,21984..21989)
/locus_tag="SMa0036"
/note="ATP binding site; other site"
/db_xref="CDD:72971"
misc_feature 21657..21668
/locus_tag="SMa0036"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature 21831..21842
/locus_tag="SMa0036"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <21903..22130
/locus_tag="SMa0036"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by...; Region: ABCF_EF-3;
cd03221"
/db_xref="CDD:72980"
misc_feature 21912..21941
/locus_tag="SMa0036"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 21972..21989
/locus_tag="SMa0036"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 21996..22007
/locus_tag="SMa0036"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 22401..22976
/locus_tag="SMa0036"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by...; Region: ABCF_EF-3;
cd03221"
/db_xref="CDD:72980"
gene complement(23398..24297)
/locus_tag="SMa0039"
/db_xref="GeneID:1235243"
CDS complement(23398..24297)
/locus_tag="SMa0039"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to LysR-family
transcriptional regulators with HTH domain"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435264.2"
/db_xref="GI:193782529"
/db_xref="GeneID:1235243"
/translation="MDRLTSMAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRL
GVQLINRTTRRQSLTEFGYVYYERCRVVLAEAQAADALASDQLSEPRGKLRVTMPVHF
GRHCVTPVLLELARKYPALELDLSFNDRIIDLAEDGFDLSIRTGVLEDRAGLIARRVA
RQPMIVCASPSYLESHGCPEAPEDLAQHAAVVYRRSGPVSPWLFPRPGQSSSEVTPLH
RFRLDDLDAIADAAARGLGLAWLPYWLVRGRIEAGTLVRLLPEQPPFLYDCHAVWLQT
PHLPLKVRVAVDALAAQLPSFMT"
misc_feature complement(23428..24297)
/locus_tag="SMa0039"
/note="putative DNA-binding transcriptional regulator;
Provisional; Region: PRK10632"
/db_xref="CDD:170584"
misc_feature complement(24112..24288)
/locus_tag="SMa0039"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature complement(23428..24024)
/locus_tag="SMa0039"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_6; cd08475"
/db_xref="CDD:176164"
misc_feature complement(order(23491..23493,23572..23574,23623..23625,
23812..23814,23818..23820,23863..23865,23980..23982,
23992..23994))
/locus_tag="SMa0039"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176164"
misc_feature complement(order(23596..23598,23605..23610,23629..23643,
23731..23733,23917..23937,23941..23943,23953..23955,
23962..23967,23971..23976,23986..23991))
/locus_tag="SMa0039"
/note="putative dimerization interface; other site"
/db_xref="CDD:176164"
gene 24399..25388
/locus_tag="SMa0041"
/db_xref="GeneID:1235244"
CDS 24399..25388
/locus_tag="SMa0041"
/codon_start=1
/transl_table=11
/product="zinc dependent oxidoreductase-releated quinone
oxidoreductase"
/protein_id="NP_435265.2"
/db_xref="GI:193782530"
/db_xref="GeneID:1235244"
/translation="MARVVRFHELGGPEVLRIEDVHVPEPGPHEVRIRVKALGLNRAE
ALLRSGAYIETATFPSGLGLEAAGFVEKVGPGVQGFIPGDPVSVLPPKSMIRWPAYGE
LAIFPAALLVRHPPSLSFEEAAAVWMQYLTAYGGLVDIGGLRRGDFVAITAASSSVGL
AAIQIANMVGAIPVAVTRTSAKRQGLLEAGAAHVIASMEEDLEAQLKRVSGQHGIRVV
FDPVGGPIFEPLAAAMAWGGILVEYGGLSPEKTPFPLFAVLSKSLTLRGYLVHELLAD
PGRLERAKAFILDGLVSGALRPIIARAFPFDQIVEAHRFLESNEQFGKIVVTV"
misc_feature 24402..25385
/locus_tag="SMa0041"
/note="Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR2; cd08268"
/db_xref="CDD:176229"
misc_feature 24402..25385
/locus_tag="SMa0041"
/note="NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only]; Region: Qor; COG0604"
/db_xref="CDD:30949"
misc_feature order(24519..24527,24534..24536,24762..24764,24792..24794,
24855..24866,24870..24875,24927..24932,24942..24944,
24987..24989,25059..25064,25068..25070,25125..25130,
25200..25208)
/locus_tag="SMa0041"
/note="putative NAD(P) binding site; other site"
/db_xref="CDD:176229"
gene complement(25417..25683)
/locus_tag="SMa0044"
/db_xref="GeneID:1235245"
CDS complement(25417..25683)
/locus_tag="SMa0044"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; start codon changed based on
codon usage pattern"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435266.1"
/db_xref="GI:16262473"
/db_xref="GeneID:1235245"
/translation="MCRNIKPLFNFDPPATDEEVRDAALQFVRKLSGTTKPSERNEAA
FERAVDSIAACARELLDALETSQPPRNREEVAARARERSAMRFA"
misc_feature complement(25477..25683)
/locus_tag="SMa0044"
/note="Uncharacterized conserved protein (DUF2277);
Region: DUF2277; cl02349"
/db_xref="CDD:154867"
gene complement(25848..26597)
/gene="cah"
/locus_tag="SMa0045"
/db_xref="GeneID:1235246"
CDS complement(25848..26597)
/gene="cah"
/locus_tag="SMa0045"
/EC_number="4.2.1.1"
/function="Small molecule metabolism; energy metabolism,
carbon; aerobic respiration"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase, Cah"
/protein_id="NP_435267.1"
/db_xref="GI:16262474"
/db_xref="GeneID:1235246"
/translation="MERRDFLRGLALLAACPLCVKTAYAAEGVHWRYEGEEGPEHWGS
LAKENSACSAGSQQSPIDIRGAVKADIPELTADWKSGGTILNNGHTIQVNAAGGTLRR
GDKSYDLVQYHFHSPSEHFVDGKSFPMEAHFVHKNAETGTLGVLGVFLVPGAANSTFA
SLAEKFPRNPGEESPLITIDPKGLLPSSLSYWTYEGSLTTPPCSEIVDWMVAMEAVEV
DPGDIKKFTALYSMNARPALAGNRRYVLSSS"
misc_feature complement(25857..26486)
/gene="cah"
/locus_tag="SMa0045"
/note="Carbonic anhydrase alpha, prokaryotic-like
subfamily. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack of
a zinc-bound hydroxide ion on carbon...; Region:
alpha_CA_prokaryotic_like; cd03124"
/db_xref="CDD:28766"
misc_feature complement(order(26001..26003,26202..26204,26241..26243,
26253..26255,26259..26261,26265..26267,26331..26333))
/gene="cah"
/locus_tag="SMa0045"
/note="active site"
/db_xref="CDD:28766"
misc_feature complement(order(26202..26204,26253..26255,26259..26261))
/gene="cah"
/locus_tag="SMa0045"
/note="zinc binding site; other site"
/db_xref="CDD:28766"
gene 26906..27154
/locus_tag="SMa5015"
/db_xref="GeneID:6435251"
CDS 26906..27154
/locus_tag="SMa5015"
/note="Similar to an approximately 75 amino acid-central
region of GntR-family transcriptional regulators; Possible
ORF fragment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000329.1"
/db_xref="GI:193782531"
/db_xref="GeneID:6435251"
/translation="MVPEVLRHLESESLVANLPNKGPIVSRLDLNEAKQIDQIRVAVG
GRATVRGAARPAIVEALEASFKGIRECYASRLRRAPAT"
gene 27295..27516
/locus_tag="SMa0050"
/db_xref="GeneID:1235248"
CDS 27295..27516
/locus_tag="SMa0050"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; partial homology to putative
succinate semialdehyde dehydrogenase; looks like
fragmented gene"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435269.1"
/db_xref="GI:16262476"
/db_xref="GeneID:1235248"
/translation="MQVGFYDDFAERLAAKVRKMKVDNGFEPGADTGPLISQKALARV
QEHISDAVAKGRECGLFFEPTVLMGGRWR"
misc_feature <27298..>27495
/locus_tag="SMa0050"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:176434"
gene 27507..27713
/locus_tag="SMa0052"
/db_xref="GeneID:1235249"
CDS 27507..27713
/locus_tag="SMa0052"
/function="Miscellaneous; Unknown"
/note="looks like fragmented gene; glimmer prediction;
partial homology to putative succ"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435270.1"
/db_xref="GI:16262477"
/db_xref="GeneID:1235249"
/translation="MEMKVARGNFGPVASLFKFSTEEAVFEMANNTEFGLASYFYSKD
ISKIFRVPEALEYGMVGINAGLIH"
misc_feature <27510..27707
/locus_tag="SMa0052"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:176434"
gene complement(28295..29428)
/locus_tag="SMa0056"
/db_xref="GeneID:1235250"
CDS complement(28295..29428)
/locus_tag="SMa0056"
/function="Small molecule metabolism; Central intermediary
metabolism"
/note="glimmer prediction; start codon changed based on
similarity in protein database"
/codon_start=1
/transl_table=11
/product="dehydratase/enolase"
/protein_id="NP_435271.1"
/db_xref="GI:16262478"
/db_xref="GeneID:1235250"
/translation="MKRPRITDIRATTVTVPLEAPLRHSNGAHWGRFVRTIVEVETDV
GIVGLGEMGGGGESAEAAFRALKPYLLGHDTFELENLRFMICNPTASLYNNRTQMHAA
IEFACLDIMGKFLGVPVCDLLGGKMRDAVPFASYMFFRLPNKDTGEGETRTADQLIEQ
TLALKKKCGFTSHKLKSGVFPPDYELEVFRAWAKALGPDSVRYDPNAAFSVEEAIRFA
KGIEDLNNDYYEDPTWGLNGMRRVRENTTMPLATNTVVVNFEQLATNILNPAVDVILL
DTTFWGGSALREGGGRLRDLPTRHCGTFVGRTRHPARHHASPRRGSPEPRLPRGCALS
PTHGRYHRRRPDALRERHYQGADGAGSRGGARSRQARAVRRPP"
misc_feature complement(<28580..29416)
/locus_tag="SMa0056"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:176427"
misc_feature complement(order(28670..28672,28739..28741,28817..28819))
/locus_tag="SMa0056"
/note="metal-binding site"
/db_xref="CDD:73188"
misc_feature complement(28598..28600)
/locus_tag="SMa0056"
/note="substrate binding pocket; other site"
/db_xref="CDD:73188"
gene complement(29492..30688)
/locus_tag="SMa0058"
/db_xref="GeneID:1235251"
CDS complement(29492..30688)
/locus_tag="SMa0058"
/EC_number="5.-.-.-"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="N-acylglucosamine 2-epimerase family protein"
/protein_id="NP_435272.1"
/db_xref="GI:16262479"
/db_xref="GeneID:1235251"
/translation="MKPIPDFRSKDFLLAHMREIMDFYHPICLNEEDGGYYNEYRDDG
FITDRKTQHLVSTTRFIFNYATAAVLFERPDFAEAAAHGVRYLDEVHRDPEHGGYYWL
MRGRDAVDATKHCYGHAFVLLAYATAMKAGIPGTGARVSQTWDLLENRFWEPDRELYK
DEVSRDWGATSPYRGQNANMHMTEAMLAAYEATGEIRYLDRAETLARRICVELAANTQ
DVVWEHYRQDWSVDWDYNKDDPKHLFRPYGYQPGHMTEWTKLLLILERYRPQDWLLPK
ALLLYETALAKSADLEFGGMHYSYGPEGKLYDLDKYHWVHCETIAAAAALAGRTGRER
YWQDYDRLWRYSWRHLIDHEYGCWFRILSPDGVKQSDIKSPSGKTDYHPFGACYEILR
VLGEAQ"
misc_feature complement(29498..30682)
/locus_tag="SMa0058"
/note="AGE domain; N-acyl-D-glucosamine 2-epimerase
domain; Responsible for intermediate epimerization during
biosynthesis of N-acetylneuraminic acid. Catalytic
mechanism is believed to be via nucleotide elimination and
readdition and is ATP modulated. AGE is...; Region: AGE;
cd00249"
/db_xref="CDD:29324"
misc_feature complement(order(29501..29503,29513..29515,30446..30448,
30485..30487,30635..30637,30656..30658))
/locus_tag="SMa0058"
/note="dimerization interface; other site"
/db_xref="CDD:29324"
misc_feature complement(order(29534..29536,29543..29548,29558..29560,
29735..29737,29747..29752,29909..29914,29921..29923,
29930..29932,30137..30139,30146..30151,30158..30160,
30320..30322,30329..30331,30341..30343,30503..30505,
30512..30514,30524..30526))
/locus_tag="SMa0058"
/note="putative active cleft; other site"
/db_xref="CDD:29324"
gene complement(30703..31488)
/locus_tag="SMa0059"
/db_xref="GeneID:1235252"
CDS complement(30703..31488)
/locus_tag="SMa0059"
/note="glimmer prediction; similar to short chain alcohol"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435273.1"
/db_xref="GI:16262480"
/db_xref="GeneID:1235252"
/translation="MSDFNGKSIVVTGGSLGMGLACAHRFAAGGGKVTIVANDKASVD
EAVTSIGDNAAGFVGDVRSKADMNAAVQAAVSRHGGVDILACCAGIQRYGTVVDTADE
VWDDVLDINLKGIFLASKFAIPEMRKRGGGAIVAISSVQAYASQTGVAAYTASKGAIN
ALVRAMALDHAGDNITVNAVCPASIDTPMLRWAADLWKGEGTVEATLETWGKGHPLGR
VGKPSEVAELVAFLASEKARFITGADIKIDGGVLSKLGIVIPD"
misc_feature complement(30706..31488)
/locus_tag="SMa0059"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature complement(30736..31485)
/locus_tag="SMa0059"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:168154"
gene complement(31488..32423)
/locus_tag="SMa0060"
/db_xref="GeneID:1235253"
CDS complement(31488..32423)
/locus_tag="SMa0060"
/note="glimmer prediction; similar to Ca2+-binding protein
regucalcin highly conserved in vertebrate species"
/codon_start=1
/transl_table=11
/product="gluconolactonase/regucalcin homolog"
/protein_id="NP_435274.1"
/db_xref="GI:16262481"
/db_xref="GeneID:1235253"
/translation="MSATVSLLLDAKDIVGESILWCGDEKALYWVDIVGKRIHRLEPE
NGRHDTWPTPDFVTSIGMRKDGGFIVGLSRNVCLWTPDGPFEEFAMPEPDLPENRLNE
GRVAPDGSFWVATMQSNLDAGGSPKDMDRQSGAVYRIDPTGHVSQLTPNEYGITNTMG
WTRDNRFFFADTLANEIYMFDCDLAARRIDNRRTIVAGFARGLPDGSCLDADDRLWNC
RVAGGAAVAGFDGAGRLMHLIELPASWPTSCTFGGPVLSTLYVTSARFTMTGDHLDMH
PLEGGLFAVEGVGHGVEEPKFGQAPDKFPSVSEIA"
misc_feature complement(31533..32423)
/locus_tag="SMa0060"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:33193"
gene 32634..33323
/locus_tag="SMa0062"
/db_xref="GeneID:1235254"
CDS 32634..33323
/locus_tag="SMa0062"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with gntR domain"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435275.1"
/db_xref="GI:16262482"
/db_xref="GeneID:1235254"
/translation="MTRDIKISAAEHCYRTLSRKIIGLELKPNEPIGEHALAGLLGVS
RTPVREALSRLSAEGLVDLRSRAGVVVAPIRMDAVRTAQFVREQLELAIVAEAAQQSN
RRVLLGIRQAIEEQELAILEDNPDLFFECDERMHALYCSLAGRDGVWAFISDAKKHMD
RVRRLSIQAGQLDQLVEDHRRVLKAVGEGDATKAQEIMRLHLRRAVVDLGELSQRFSS
YFALDAAGDAR"
misc_feature 32634..33296
/locus_tag="SMa0062"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 32673..32849
/locus_tag="SMa0062"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(32733..32738,32760..32774,32778..32783,32790..32792,
32820..32825,32829..32840)
/locus_tag="SMa0062"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 32886..33245
/locus_tag="SMa0062"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene 33453..34187
/locus_tag="SMa0063"
/db_xref="GeneID:1235255"
CDS 33453..34187
/locus_tag="SMa0063"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with gntR transcriptional
regulator domain"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, GntR family"
/protein_id="NP_435276.2"
/db_xref="GI:193782532"
/db_xref="GeneID:1235255"
/translation="MIELKAEEQSSSGRSGAEGLLGGVMTAVKTHIRENGLQVGDSLP
SEGTFAEKLGVSRSVVREAYRSLAALTLIDIGNGRRPRVAAPKADVLALVTDHAVHTD
QVTIQQIFDVRRTVERRTVVLAAMRRTDKEAAEIVALAEAMQRDFDQPVRVMEHDIAF
HEAIGRASRNPMFALIVGSFHVVTRHTWPIGWASRGSNETRQESIDGHMTIAQAIANG
DPAKGEEAMVEHFDLTVKALLAAGVY"
misc_feature 33522..34178
/locus_tag="SMa0063"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 33522..33704
/locus_tag="SMa0063"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(33582..33584,33588..33593,33615..33629,33633..33638,
33645..33647,33675..33680,33684..33695)
/locus_tag="SMa0063"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 33774..34148
/locus_tag="SMa0063"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene 34190..35392
/locus_tag="SMa0064"
/db_xref="GeneID:1235256"
CDS 34190..35392
/locus_tag="SMa0064"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; with homology to the domain of
mandelate racemase / muconate lactonizing enzyme family"
/codon_start=1
/transl_table=11
/product="dehydratase/enolase"
/protein_id="NP_435277.2"
/db_xref="GI:193782533"
/db_xref="GeneID:1235256"
/translation="MKITELETVRVRDFPNILWVRIHTDEGLVGLGETFFMAQTVETY
IHEVVAPKLVGRDPLEIDRISKDLTGYLGFRSTGAEMRGNSAVDIGLWDLFGKATNLP
IAQLLGGFSRREIRTYNTCAGNTYMRDAKGQQTANYGIGGPRRDYDDLNGFLERADEL
AEDLLSEGITAMKIWPFDIAAEKSGGQYISGPDLRKALEPFEKIRKRVGDRIDIMVEF
HSMWQLTPAIQIARALEPYATFWHEDPIKMDSLSSLKRYAAASRAPLCASETLATRWA
FRDLMETDAAGVVMLDLSWCGGISEAKKISTMAEAWHLPVAPHDCTGPVVLAASTHLS
LNAPNALVQESVRAYYKTWYADLTTQLPTVTNGMITIPPGAGHGVDLAPDLDRKFEVS
RRSSQIED"
misc_feature 34190..35371
/locus_tag="SMa0064"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:34556"
misc_feature 34193..35329
/locus_tag="SMa0064"
/note="Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share three
conserved carboxylate ligands for the essential divalent
metal ion (usually Mg2+), two aspartates and a glutamate,
and conserved catalytic residues...; Region: MR_like;
cd03316"
/db_xref="CDD:48191"
misc_feature order(34706..34708,34712..34714,34838..34840,34916..34918,
34994..34996,35063..35065,35144..35146,35219..35221)
/locus_tag="SMa0064"
/note="active site pocket"
/db_xref="CDD:48191"
gene 35455..36147
/locus_tag="SMa0065"
/db_xref="GeneID:1235257"
CDS 35455..36147
/locus_tag="SMa0065"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to transcriptional
regulator with gntR domain"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435278.1"
/db_xref="GI:16262485"
/db_xref="GeneID:1235257"
/translation="MQNIKPQRVLSAIEAVGPQVYRILREQIIQAELVPGARISEAEI
ARSLSISRQPVREAFIKLAEEGLVQVLPQRGTYVTRISTASVMDVRFVREAIEADIVR
QVAGEHPAAIVDELREQIARQKQVPHDDRAAFLRLDELFHHTLATAAGRAHAWSVIES
VKAQMDRVRFLSVDDLQIGRLIEQHERIVDAIAARDVGGAEQALRMHLREILKSLPEI
ARSREEFFDGTG"
misc_feature 35509..36135
/locus_tag="SMa0065"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 35509..35691
/locus_tag="SMa0065"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(35575..35580,35602..35616,35620..35625,35632..35634,
35662..35667,35671..35682)
/locus_tag="SMa0065"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 35716..36081
/locus_tag="SMa0065"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene 36205..37167
/locus_tag="SMa0067"
/db_xref="GeneID:1235258"
CDS 36205..37167
/locus_tag="SMa0067"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to sugar ABC
transporter, periplasmic sugar-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435279.1"
/db_xref="GI:16262486"
/db_xref="GeneID:1235258"
/translation="MIAGTALGLTLMAPAASAEGLSIAFISHSSASNTFWQAVKKGYD
DACEKVGASCQLILTQTEGAVEQAVANLQAAIASRPDAIFVAIVDNNAYDNVIKEAVD
AGILVLAVNVDDSEGAKGNARKAFIGQGFTAAGYSLAKAQSENFPKDGPLNLLVGVNA
PGQTWSEQRAGGVTKFLEEYKAEHSDREVNITRIDSATDLALTADRIGAYLNANPDTA
AYFDTGYWHAGVAKVLKDRGIEPGKVLLGGFDLVPEVLQQMEAGYVQVQVDQQPYMQG
FIPVMQAYLWKTAGLTPSDVDTGQGIVTPKDVPTILELAKQGLR"
misc_feature 36205..37158
/locus_tag="SMa0067"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature 36268..37113
/locus_tag="SMa0067"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_4; cd06312"
/db_xref="CDD:107307"
misc_feature order(36307..36309,36535..36537,36709..36711,36952..36954,
37012..37014)
/locus_tag="SMa0067"
/note="putative ligand binding site; other site"
/db_xref="CDD:107307"
gene 37353..38336
/locus_tag="SMa0070"
/db_xref="GeneID:1235259"
CDS 37353..38336
/locus_tag="SMa0070"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; C-terminal similar to sugar ABC
transporter permease"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="NP_435280.1"
/db_xref="GI:16262487"
/db_xref="GeneID:1235259"
/translation="MKRFLKIYLDKPELAGLALLFVLVLVFQAKSNGILLSFENMRGV
MGLLPEMALVAIGVTLLMICGEFDLSVGSVFALMPMSMAVLLNSGVPFTVAVLLGLMI
CGAIGFINGYVTLQFSIPSFITTLGMLFIARSLTIVISGGFPPLLPPDLPTWLFTDYI
WQGSPFRMSFLWFVVIAALVAALLSLTNFGNWIRATGGFNEAAASMGIPVKRVKIVCF
MLCSVLAGFAGLLQVLRLGSPLPSIGEGLELQAVAAAVIGGTALAGGIGTVFGAIIGT
LLIRTIDNGLVLSRVDANWFKFAIGVLTMFAVIANAWMGKMSRKIKVEAHK"
misc_feature 37497..38285
/locus_tag="SMa0070"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 37953..38009
/locus_tag="SMa0070"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 38333..39064
/locus_tag="SMa0072"
/db_xref="GeneID:1235260"
CDS 38333..39064
/locus_tag="SMa0072"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to sugar ABC transport
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435281.1"
/db_xref="GI:16262488"
/db_xref="GeneID:1235260"
/translation="MTTPIIECRNLQKWYSGVHALKNVDLTIHPGETVGLVGDNGAGK
STLIKILSGVHHQDSGDVLIEGRRVALRSPKDAMRYGLETIYQYNSMVPTMSIARNLF
IGREPMKWSVFGVGIMDQKRMRVESIQAIADVDLHLRSPDALVGELSGGQRQGVAIAR
AMHFKSKVLILDEPTNHLSVKETDKVIGFVRGLKAQGLTGIFISHNMQHVFQSCDRIV
AMARGEIVFDKPTADTSIDEVHALL"
misc_feature 38339..39031
/locus_tag="SMa0072"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 38348..39010
/locus_tag="SMa0072"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and...;
Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 38444..38467
/locus_tag="SMa0072"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(38453..38458,38462..38470,38591..38593,38846..38851,
38945..38947)
/locus_tag="SMa0072"
/note="ATP binding site; other site"
/db_xref="CDD:72975"
misc_feature 38582..38593
/locus_tag="SMa0072"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(38615..38626,38693..38710)
/locus_tag="SMa0072"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 38834..38851
/locus_tag="SMa0072"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 38858..38869
/locus_tag="SMa0072"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 38933..38953
/locus_tag="SMa0072"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
gene 39072..39830
/gene="fabG"
/locus_tag="SMa0074"
/db_xref="GeneID:1235261"
CDS 39072..39830
/gene="fabG"
/locus_tag="SMa0074"
/note="catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-(acyl-carrier-protein) reductase"
/protein_id="NP_435282.1"
/db_xref="GI:16262489"
/db_xref="GeneID:1235261"
/translation="MTELSGKTILITGALGTLGRAQAERLGRAGAGLLLLLDRPGAEA
GEGFAASLAAAHETMAIYVGEDLNNLASAEKRAATLSSEHGGIDILINNAALIINKPF
EEFSLEEYEDQVRVNSSAAFALARAVTPGMKQKRYGKIVNFCSLTLNGRWDGYVPYVA
SKGAMLGLTKALARELGPHGVRVNAVSPGAVVSEAEERVFADRLQQYNDWIVENQSLK
ARIQPSDVADLVHFLVSPASDMISGQNIAIDGGW"
misc_feature 39072..39827
/gene="fabG"
/locus_tag="SMa0074"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature 39081..39827
/gene="fabG"
/locus_tag="SMa0074"
/note="flagellin modification protein A; Provisional;
Region: PRK09186"
/db_xref="CDD:169699"
gene 39830..40717
/locus_tag="SMa0077"
/db_xref="GeneID:1235262"
CDS 39830..40717
/locus_tag="SMa0077"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435283.1"
/db_xref="GI:16262490"
/db_xref="GeneID:1235262"
/translation="MPAIELSNGEARLLARPDLGAGLTAFDVLHDGVWQAIFRRVDPS
TAHPFALSNILLVPFSGRVSGGGFTFDGTFHALPRNVETELYPIHGNGFSAAWDVASL
SADLLTLTLSAEGPGPFRYDATMSYRLQGAGLLMELSLVNRARIRLPYGAGFHPWFVR
EPDTTLHAPARGVWLEQSDHLPKAHDAIAAQADLDFNRPKPLPARWINNWFDGWDGKA
RIHWPSRGLAVDVDASEGLRQYVVFSPAAAADFFCFEPVTHPVDAFNLPGKAEAHGLK
ILEPDESLAVSARVAADFG"
misc_feature 39830..40714
/locus_tag="SMa0077"
/note="Aldose 1-epimerase; Region: Aldose_epim; cl00476"
/db_xref="CDD:174228"
gene 40959..41981
/locus_tag="SMa0078"
/db_xref="GeneID:1235263"
CDS 40959..41981
/locus_tag="SMa0078"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to pckR, putative
regulator of pckA expression; also similar to LacI/GalR"
/codon_start=1
/transl_table=11
/product="LacI family transcriptional regulator"
/protein_id="NP_435284.1"
/db_xref="GI:16262491"
/db_xref="GeneID:1235263"
/translation="MSSQERKKSRVTLLDVARHASVSRATASLVLRKSPLVGSETRAR
VEQAMRDLGYVYNIGAARLRVERSQIIGAIVPNLTNPFFAELLSGIEEAIGATGKVVI
LANSGERVERQSMLLQRMREHGVDGVVLCPAAGTEPDLSEQLAAWGMPVVQVLRHISV
DMDYVGVDYAGGMRQAVDYLASLGHEKIAFAVHGPFHSAYRERVDGFRDAMLAKAFDP
EILIHLPAQLGEIADSTHLLFAKATQPTAVICFNHLVALGLAAGLHDCGLTIGRDLSL
IGFDDVADAEAIRPRLTSVSTGPTAIGEMAARLLVERIANPDLPPRRVVNDTTLSVRQ
SCGRPA"
misc_feature 40989..41975
/locus_tag="SMa0078"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 41001..41150
/locus_tag="SMa0078"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(41022..41036,41040..41045,41052..41054,41067..41072,
41079..41081,41118..41120,41127..41129,41136..41141,
41145..41150)
/locus_tag="SMa0078"
/note="DNA binding site"
/db_xref="CDD:143331"
misc_feature 41118..41147
/locus_tag="SMa0078"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 41166..41960
/locus_tag="SMa0078"
/note="Ligand-binding domain of MalI, a transcription
regulator of the maltose system of Escherichia coli and
its close homologs from other bacteria; Region:
PBP1_MalI_like; cd06289"
/db_xref="CDD:107284"
misc_feature order(41166..41168,41205..41213,41220..41225,41229..41234,
41253..41267,41271..41273,41304..41306,41313..41315,
41322..41330,41643..41645,41727..41729,41739..41741,
41748..41753)
/locus_tag="SMa0078"
/note="putative dimerization interface; other site"
/db_xref="CDD:107284"
misc_feature order(41202..41207,41214..41216,41349..41351,41421..41423,
41457..41459,41565..41567,41634..41636,41796..41798,
41847..41849)
/locus_tag="SMa0078"
/note="putative ligand binding site; other site"
/db_xref="CDD:107284"
gene 42106..42774
/locus_tag="SMa0079"
/db_xref="GeneID:1235264"
CDS 42106..42774
/locus_tag="SMa0079"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid
(glutamine) ABC transporter, permease protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435285.1"
/db_xref="GI:16262492"
/db_xref="GeneID:1235264"
/translation="MYEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWG
KTAGPAILRHVIDGYIEIIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGA
YGTEIIRAGIESIHKGQVEAGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLN
TSVVSVISADDLAAAGNDLQSATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFKY
PLGR"
misc_feature 42142..42750
/locus_tag="SMa0079"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 42163..42720
/locus_tag="SMa0079"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(42211..42216,42223..42228,42241..42243,42271..42282,
42286..42315,42322..42327,42331..42333,42397..42402,
42406..42408,42412..42414,42421..42426,42430..42432,
42442..42447,42454..42456,42505..42507,42547..42552,
42559..42561,42580..42591,42598..42603,42640..42645,
42673..42678,42685..42690,42694..42699,42706..42711,
42718..42720)
/locus_tag="SMa0079"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature order(42289..42333,42580..42597)
/locus_tag="SMa0079"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(42331..42333,42382..42384,42598..42600,42634..42636,
42643..42645,42673..42675)
/locus_tag="SMa0079"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(42457..42495,42511..42516,42526..42528)
/locus_tag="SMa0079"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 42785..43441
/locus_tag="SMa0081"
/db_xref="GeneID:1235265"
CDS 42785..43441
/locus_tag="SMa0081"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter, permease protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435286.1"
/db_xref="GI:16262493"
/db_xref="GeneID:1235265"
/translation="MIRAFGWNEFLVIVAAAQWTIALSAIAFAGGSVGGLLVALMRVS
ETRALRLFATGFIRVFQGTPLLMQLFLVFFGMNIFGFAINPWIAATIALALHASAFLG
EIWRGCIEAVPKGQREAATALGLRYFRSMRHVILPQAARIAVAPTVGFLVQLIKGTSL
ASIIGFTELTRQGQIINNATFSPFLVFGTVAAVYFLLCWPLSLIARRMETRFSRATAR"
misc_feature 42806..43438
/locus_tag="SMa0081"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 42833..43375
/locus_tag="SMa0081"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(42881..42886,42893..42898,42911..42913,42941..42952,
42956..42985,42992..42997,43001..43003,43067..43072,
43076..43078,43082..43084,43091..43096,43100..43102,
43112..43117,43124..43126,43175..43177,43217..43222,
43229..43231,43250..43261,43268..43273,43310..43315,
43343..43348,43355..43360,43364..43369)
/locus_tag="SMa0081"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature order(42959..43003,43250..43267)
/locus_tag="SMa0081"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(43001..43003,43052..43054,43268..43270,43304..43306,
43313..43315,43343..43345)
/locus_tag="SMa0081"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(43127..43165,43181..43186,43196..43198)
/locus_tag="SMa0081"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 43471..44286
/locus_tag="SMa0082"
/db_xref="GeneID:1235266"
CDS 43471..44286
/locus_tag="SMa0082"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter, periplasmic amino acid-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435287.1"
/db_xref="GI:16262494"
/db_xref="GeneID:1235266"
/translation="MRREGLMNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTV
KVGMLVDFPPFGIMDANNQPDGYDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQV
DLLVASLGITEERAKNVDFSQPYAGISIGVFGAADLAVTKPEDLAGKTIGVARASTQD
TATTKIAPQDANIQRFDDDASAVQALLSGQVELIGVSNVVAAQIEAAAPGRFNQKLQL
SQQVQGIAVRKGSSEMLKFVNGFLDKVKADGQLNAIHEKWLGSPLPEFVTEAK"
misc_feature 43600..44250
/locus_tag="SMa0082"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:144186"
misc_feature 43600..44247
/locus_tag="SMa0082"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and...; Region: PBPb;
cd00134"
/db_xref="CDD:29040"
misc_feature order(43624..43626,43738..43740,43813..43815,43942..43944,
44059..44061)
/locus_tag="SMa0082"
/note="substrate binding pocket; other site"
/db_xref="CDD:29040"
misc_feature order(44008..44010,44020..44022,44038..44040)
/locus_tag="SMa0082"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 44125..44142
/locus_tag="SMa0082"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 44302..45081
/locus_tag="SMa0083"
/db_xref="GeneID:1235267"
CDS 44302..45081
/locus_tag="SMa0083"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to amino acid ABC
transporter, ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435288.1"
/db_xref="GI:16262495"
/db_xref="GeneID:1235267"
/translation="MNTEREYASPPDSREALDPAVRMEGVNKWYDAFHALKNIDLTVG
RGERIVICGPSGSGKSTLIRCINQLETIHSGRIVVDGHDLTAGGRNVDLVRQETGMVF
QQFNLFPHMTVLENCTLAPMKVRGLAKAEAEETAMKYLKRVRIPEQAVKYPAQLSGGQ
QQRVAIARALCMNPKIMLFDEPTSALDPEMVKEVLDTMVDLANEGMTMLCVTHEMGFA
RSVADRVVFMDRGEVLEIAPPDAFFGAPQHERTRFFLGQIS"
misc_feature 44356..45078
/locus_tag="SMa0083"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature 44362..45000
/locus_tag="SMa0083"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature 44458..44481
/locus_tag="SMa0083"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature order(44467..44472,44476..44484,44608..44610,44839..44844,
44938..44940)
/locus_tag="SMa0083"
/note="ATP binding site; other site"
/db_xref="CDD:73021"
misc_feature 44599..44610
/locus_tag="SMa0083"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature 44767..44796
/locus_tag="SMa0083"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature 44827..44844
/locus_tag="SMa0083"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature 44851..44862
/locus_tag="SMa0083"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature 44926..44946
/locus_tag="SMa0083"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene 45099..46052
/locus_tag="SMa0085"
/db_xref="GeneID:1235268"
CDS 45099..46052
/locus_tag="SMa0085"
/note="glimmer prediction; similar to putative D-isomer
specific 2-hydroxyacid"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435289.1"
/db_xref="GI:16262496"
/db_xref="GeneID:1235268"
/translation="MEFRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEA
ALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGV
LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIG
RALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD
ASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTP
NTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN"
misc_feature 45117..46049
/locus_tag="SMa0085"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature 45432..45953
/locus_tag="SMa0085"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene 46069..46401
/locus_tag="SMa0087"
/db_xref="GeneID:1235269"
CDS 46069..46401
/locus_tag="SMa0087"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435290.1"
/db_xref="GI:16262497"
/db_xref="GeneID:1235269"
/translation="MIVRQALFEGTIRPGREQAFRGYVEEKLVPLWRAFPGVREVRVL
HAVDRDEGAPAFAMILSTTYDDREALARALASPVRYESRELTKGLLEMFEGHIHHHVF
DLDARSTA"
misc_feature 46105..>46299
/locus_tag="SMa0087"
/note="EthD protein; Region: EthD; cl06234"
/db_xref="CDD:157104"
gene 46684..47100
/locus_tag="SMa0089"
/db_xref="GeneID:1235270"
CDS 46684..47100
/locus_tag="SMa0089"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435291.1"
/db_xref="GI:16262498"
/db_xref="GeneID:1235270"
/translation="MKRNEQMTRRDAVFPANRHALYEAHGYSAAIRSGDLLFVSGQVG
SRSDGSPEPDFGRQVQLAFDNLRATLNAAGCTFDDIVDVTTFHTDPENQFETIMAVKN
QVFGTPPYPNWTALGVNWLAGFDFEIKVIARIPEAA"
misc_feature 46756..47085
/locus_tag="SMa0089"
/note="YjgH belongs to a large family of
YjgF/YER057c/UK114-like proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence similarity and no...;
Region: YjgH_like; cd02198"
/db_xref="CDD:100005"
misc_feature order(46762..46767,46774..46776,46780..46782,46789..46791,
46795..46797,46801..46806,46918..46920,46924..46929,
46933..46935,46939..46941,46975..46977,46984..46986,
46996..46998,47011..47037,47062..47064,47068..47070,
47074..47076)
/locus_tag="SMa0089"
/note="homotrimer interaction site; other site"
/db_xref="CDD:100005"
misc_feature order(46762..46764,46963..46965,46975..46977,47020..47022,
47062..47064)
/locus_tag="SMa0089"
/note="putative active site; other site"
/db_xref="CDD:100005"
gene 47225..47920
/locus_tag="SMa0091"
/db_xref="GeneID:1235271"
CDS 47225..47920
/locus_tag="SMa0091"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435292.1"
/db_xref="GI:16262499"
/db_xref="GeneID:1235271"
/translation="MKTALAVFGGFVLSLALFLSGAVVAVLFLTGKPARQPQLDVNQS
EVWTKQPRAVDRTAQQFERLPARPAPSDVNASREPETPAMANEAEKERSPEPLDRMAT
ASIQSPPAEEEPTASTVPAAHAEWCARRYRSYRPFDNTYRSFSGGRRSCNSPYMDAAW
GPSEDPSPVPRGIDAEDADDPSTQMEYSAGDGEAIRLTQEHVAYCFSRYRSYRPEDNS
YQPYSGGPRRQCR"
misc_feature 47588..47680
/locus_tag="SMa0091"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:149128"
misc_feature 47822..47917
/locus_tag="SMa0091"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:149128"
gene 48182..49033
/locus_tag="SMa0093"
/db_xref="GeneID:1235272"
CDS 48182..49033
/locus_tag="SMa0093"
/EC_number="2.6.1.21"
/function="Small molecule metabolism; Degradation; amino
acids"
/note="glimmer prediction. Interconversion of pyruvate and
D-alanine. Similar to Smc01047 of S. meliloti chromosome"
/codon_start=1
/transl_table=11
/product="Branched-chain amino acid aminotransferase"
/protein_id="NP_435293.1"
/db_xref="GI:16262500"
/db_xref="GeneID:1235272"
/translation="MGRIVYVHGQFVPEEEARIGLFDRGFLFGDAVYEVTAVIGGRMI
DNDLHLGRLERSLRELAIPLGLSRKEIAGVQAELIARNALLDGTVYLQVSRGEADRDF
LYSDALAPRLVGFTQAKTLTGTKAQQDGISVDLADDPRWHRRDIKTAMLLGQVMAKQA
ARARGFDDVWLVENGLVTEGASSTAHVITGDGRILTRAASRATLPGCTQRALALLCAA
EDLAIEERAFTPNEAQAAAEAFQTSASSLVMPVVRIGERVVGNGKPGPMTRKLQALYL
EAAGVPV"
misc_feature 48197..49006
/locus_tag="SMa0093"
/note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV
(PLPDE_IV). This D-amino acid superfamily, one of five
classes of PLPDE, consists of branched-chain amino acid
aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate...; Region:
PLPDE_IV; cl00224"
/db_xref="CDD:174046"
misc_feature order(48254..48259,48263..48268,48272..48274,48278..48280,
48356..48358,48449..48451,48455..48457,48518..48520,
48626..48628,48638..48640,48644..48646,48656..48658,
48698..48700)
/locus_tag="SMa0093"
/note="homodimer interface; other site"
/db_xref="CDD:29567"
misc_feature order(48278..48280,48335..48337,48620..48622,48716..48718,
48800..48805,48911..48913)
/locus_tag="SMa0093"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29567"
misc_feature 48320..49006
/locus_tag="SMa0093"
/note="Aminotransferase class IV; Region: Aminotran_4;
pfam01063"
/db_xref="CDD:144598"
misc_feature order(48335..48337,48620..48622,48716..48718)
/locus_tag="SMa0093"
/note="pyridoxal 5'-phosphate binding site; other site"
/db_xref="CDD:29567"
misc_feature 48620..48622
/locus_tag="SMa0093"
/note="catalytic residue; other site"
/db_xref="CDD:29567"
gene 49084..50121
/locus_tag="SMa0095"
/db_xref="GeneID:1235273"
CDS 49084..50121
/locus_tag="SMa0095"
/EC_number="3.4.11.19"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/codon_start=1
/transl_table=11
/product="D-aminopeptidase"
/protein_id="NP_435294.1"
/db_xref="GI:16262501"
/db_xref="GeneID:1235273"
/translation="MKTARELGLIPQGRLEPGPGNAITDVAGVSVGHRSLRGEGLFTG
VTAILPHAGDVFRVKPRAAVEVINGFGKSAGLMQVAEIGTIETPIVLTNTFGVAACTE
ALVRRAISANPAIGRKTSTVNALVCECNDGSINDIQALAVTPADAEAALDAARTGPVE
QGAVGAGSGMTAFGFKAGIGTASRRMRVGKRDFTLGTLVLANFGAAGDLVLPDGRRPD
PRVPAGPERGSVIVVMATDLPLADRQLQRVARRAGAGLARLGAFWGHGSGDVALCFTT
ADPVEHEPATAFTTQERLADGHIDIAFRAAADTTQEAVLNALCMAPAMPARNGRIYPC
LADWLMENPSP"
misc_feature 49120..50088
/locus_tag="SMa0095"
/note="L-Aminopeptidase D-amidase/D-esterase (DmpA)
family; DmpA catalyzes the release of N-terminal D and L
amino acids from peptide susbtrates. DmpA is synthesized
as a single polypeptide precursor, which is
autocatalytically cleaved to the active...; Region: DmpA;
cd02253"
/db_xref="CDD:73149"
misc_feature order(49264..49266,49324..49329,49810..49812,49822..49824,
49831..49833,49954..49968,49972..49974)
/locus_tag="SMa0095"
/note="homodimer interface; other site"
/db_xref="CDD:73149"
misc_feature order(49279..49290,49294..49302,49306..49308,49312..49317,
49324..49326,49366..49368,49375..49377,49399..49401,
49471..49473,49831..49836,49867..49881,49969..49971,
49981..49983,49990..49992)
/locus_tag="SMa0095"
/note="homotetramer interface; other site"
/db_xref="CDD:73149"
misc_feature order(49471..49473,49687..49689,49768..49770,49882..49887)
/locus_tag="SMa0095"
/note="active site pocket"
/db_xref="CDD:73149"
misc_feature 49765..49770
/locus_tag="SMa0095"
/note="cleavage site"
/db_xref="CDD:73149"
gene complement(50138..51079)
/locus_tag="SMa0097"
/db_xref="GeneID:1235274"
CDS complement(50138..51079)
/locus_tag="SMa0097"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with HTH domain, similar to
LysR family"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435295.1"
/db_xref="GI:16262502"
/db_xref="GeneID:1235274"
/translation="MEIKWLEDFVTLADTSSFSRAAELRNVTQPAFSRRIKQLESWLG
ATLISRATMPAELTPAGRNFLPVAQEAIRTFYAAREVLRLPHEPGLIRFAALHTLTVT
FFPRWLKTLEAAGGSFSTSLIPDRGGIEANLDALVGDEADFFLTYAHPEVPFHLDSGQ
FSSLTVAHDRLIPLVAAEIVLSGDPQPGLNLLDRAIAQPRLAIPYLSYGFNSFFGVAL
SRLLLRRPPFRRRTTHENTISAGLMNMAVTGAGVCWLPESLAREEIDARRLVPASADE
GWNLDLEIRLYRHAASRNRKVEELWATAQRLLEPAPA"
misc_feature complement(50141..51079)
/locus_tag="SMa0097"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(50894..51073)
/locus_tag="SMa0097"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature complement(50177..50809)
/locus_tag="SMa0097"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:176431"
gene 51262..52887
/locus_tag="SMa0101"
/db_xref="GeneID:1235275"
CDS 51262..52887
/locus_tag="SMa0101"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="Amidohydrolase"
/protein_id="NP_435296.1"
/db_xref="GI:16262503"
/db_xref="GeneID:1235275"
/translation="MAFGIKADLILINGRIWRGREEGISEALAVWQGKILATGSDTDI
LGLKGPRTEVIDLEGRFATPGLIDNHLHLIATGMAMGWVDATPASAPTLAALMGRISD
RAATTPKGGWVRARGYDQVKLDTGRHPTRDDLDRVAPDHPVLLTRACGHVSIANSRAL
ELAGITEATAVPEGGVIGVTEGRLNGFLAENAQNLVKAAMPSATTEDLIDGIERAGRY
LLSFGITSCMDAAVGQVSGFAEIQAYEMAKLSGRLPVRVWLTLLGDPGVSIVEDCWRA
GLLSGAGDDMLRVGGVKVFLDGSAGGRTAWMTRPYRGEPDNIGVQMLPDAEVEAVVKA
CHDRGYQMVCHAIGDGAIEQLITAYEKALAANPDPDRRHRVEHCGFSTPDQNARMKAA
GILPAPQMAFIHDFGDSYISVLGEERGRLSYPIGTWMRMGLKPSTGSDSPVCSPDPFP
NLHAMLTRQTGKGTVMEASERLSRQEALQTYTEYGAYSQKAEGVKGRLVPGQWADIAV
FDNDLLAAPPETILSDTSCVLTLLAGRVVHDAR"
misc_feature 51268..52884
/locus_tag="SMa0101"
/note="Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only];
Region: COG1574"
/db_xref="CDD:31762"
misc_feature 51340..52785
/locus_tag="SMa0101"
/note="YtcJ_like metal dependent amidohydrolases. YtcJ is
a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling; Region: YtcJ_like;
cd01300"
/db_xref="CDD:30043"
misc_feature order(51469..51471,51475..51477,52294..52296,52390..52392,
52579..52581)
/locus_tag="SMa0101"
/note="active site"
/db_xref="CDD:30043"
gene 52944..54536
/locus_tag="SMa0104"
/db_xref="GeneID:1235276"
CDS 52944..54536
/locus_tag="SMa0104"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide
transporter, dipeptide-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435297.1"
/db_xref="GI:16262504"
/db_xref="GeneID:1235276"
/translation="MLKRLTLAAMLSLGVAAGALAAGERHGGTLVFTAPYGSSFATLD
VQSSPNTQEEFITQAIHRALYSWDSNQNKPVLELATSEEVSEDGKVHTYHLRKNAVFH
NGKPLTADDIIYSYKRIANPENAFPGASFIAVIKGAEDYIAGKADEISGLKKIDDHTL
EITYTGTINPGFPLMQNTTVIYPSNVEGESTFGKNPVGLGAFVFKEHVPGSQVVVEKF
DKYYEEGRPYLDRINIVLMAEDAARDVAFRNKEIDVSILGPTQYQAYQGEEGLKDHLL
EVAEVYTRNIGFNPAFEPFKDKRVRQAINHAINAPLIIERLVKNKAYPASGWLPISSP
AFDKDKAPYAYDPEKAKALLAEAGYADGFEFEVTASPNESWGVPIVEAILPMLKKVGI
TVKPKPVESSTLGEAVTTNNFQAFIWSNLSGPDPLNALRCYYSKTAQSACNYTSYASP
EFDKLYEAAQQERDSAKQNDLLRQANNIVQDDAPVWFFNYNKAVMAYQPWIHGLVPNA
TELAIQPYDEIWIDETAPSSRQ"
misc_feature 53034..54455
/locus_tag="SMa0104"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature 53160..54263
/locus_tag="SMa0104"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:144185"
gene 54624..55559
/locus_tag="SMa0105"
/db_xref="GeneID:1235277"
CDS 54624..55559
/locus_tag="SMa0105"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide transport
system permease protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435298.1"
/db_xref="GI:16262505"
/db_xref="GeneID:1235277"
/translation="MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRR
AADPQMIARLNEEFGLNKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASL
QLAIAAMIFALVISVPLGFVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFAL
QLNWLPSFGYGDGSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGM
SEAKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDI
PVVQGTILVIVLWFLVINTAVDLIYAAIDPRIKQE"
misc_feature 54915..55487
/locus_tag="SMa0105"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(54963..54968,54975..54980,54993..54995,55026..55037,
55041..55070,55077..55082,55086..55088,55185..55190,
55194..55196,55200..55202,55209..55214,55218..55220,
55230..55235,55242..55244,55293..55295,55335..55340,
55347..55349,55368..55379,55386..55391,55416..55421,
55449..55454,55461..55466,55470..55475,55482..55487)
/locus_tag="SMa0105"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature order(55044..55088,55368..55385)
/locus_tag="SMa0105"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(55086..55088,55170..55172,55386..55388,55410..55412,
55419..55421,55449..55451)
/locus_tag="SMa0105"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(55245..55283,55299..55304,55314..55316)
/locus_tag="SMa0105"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 55565..56386
/locus_tag="SMa0106"
/db_xref="GeneID:1235278"
CDS 55565..56386
/locus_tag="SMa0106"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to dipeptide ABC
transporter, dipeptide-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435299.1"
/db_xref="GI:16262506"
/db_xref="GeneID:1235278"
/translation="MRLGFNFWLGAGLTTLVILAGILAPWIAPFDPVLDADLMNSELP
PDATFWFGTDGQGRDVYTRILYGAQISLTVGIVSQVINSIIGVTLGMTAGYWGGWWDD
LVNGFTNVMLAIPSLIFALAVMAVLGPGLPSLLIALGLTNWSWTCRIARSSTLSLKSL
GYVQAAQTLGYGDLRIMFTQILPNMMGPILVMATLGMGSAVLSEAALSFLGLGIQPPF
PSWGSMLTDARQLIQLAPWVAIFPGLAIFLSVLGFNLLGDGLRDSLDPHMRTRNP"
misc_feature 55766..56314
/locus_tag="SMa0106"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(55814..55819,55826..55831,55844..55846,55874..55885,
55889..55918,55925..55930,55934..55936,55985..55990,
55994..55996,56000..56002,56009..56014,56018..56020,
56030..56035,56042..56044,56093..56095,56135..56140,
56147..56149,56168..56179,56186..56191,56231..56236,
56264..56269,56276..56281,56285..56290,56297..56302,
56309..56314)
/locus_tag="SMa0106"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature order(55892..55936,56168..56185)
/locus_tag="SMa0106"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(55934..55936,55970..55972,56186..56188,56225..56227,
56234..56236,56264..56266)
/locus_tag="SMa0106"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(56045..56083,56099..56104,56114..56116)
/locus_tag="SMa0106"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 56383..57297
/locus_tag="SMa0108"
/db_xref="GeneID:1235279"
CDS 56383..57297
/locus_tag="SMa0108"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; similar to oligopeptide ABC
transporter, ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435300.1"
/db_xref="GI:16262507"
/db_xref="GeneID:1235279"
/translation="MTEPLLDIRDLHLGIAVGRSVNRPLLKGVSFQIMPGEAYGLVGE
SGSGKSVTSLAVMGLLKKPLAVSGGEILFKGQNLLELPKREMRRLRGNRIAMIFQEPM
TALNPLSTIGRQIAEMFVLHQGKSWDEAQKLAIEALASVRVPNPDRRARNYPHQMSGG
LRQRVMIAMALACNPDLLIADEPTTALDVTVQAEVLRLIKELCAERGTAVLFISHDLG
VIASICQRVGVMYAGCLVEENETRALFAAPRHEYTRGLLGALPRFGSRSLHGRQRLVD
IDSIIADRSKLIETRFIAPRGAEEGGQP"
misc_feature 56395..57270
/locus_tag="SMa0108"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature 56395..57099
/locus_tag="SMa0108"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 56509..56532
/locus_tag="SMa0108"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(56518..56523,56527..56535,56677..56679,56923..56928,
57025..57027)
/locus_tag="SMa0108"
/note="ATP binding site; other site"
/db_xref="CDD:73016"
misc_feature 56668..56679
/locus_tag="SMa0108"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 56851..56880
/locus_tag="SMa0108"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 56911..56928
/locus_tag="SMa0108"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 56935..56946
/locus_tag="SMa0108"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 57013..57033
/locus_tag="SMa0108"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 57088..>57249
/locus_tag="SMa0108"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:157624"
gene 57294..58256
/locus_tag="SMa0110"
/db_xref="GeneID:1235280"
CDS 57294..58256
/locus_tag="SMa0110"
/function="Cell processes; Transport of small molecules;
amino acids, amines, peptides"
/note="glimmer prediction; oligopeptide ABC transporter,
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435301.1"
/db_xref="GI:16262508"
/db_xref="GeneID:1235280"
/translation="MTDPLLEVDDLHVRFSVSGGGLLGTGRRMLHAVNGIGFSLSKGE
CLSIVGESGCGKSTTALSVLGLQEPTEGTIRYRGQPLTGPGAPGRMQRAKAVQMVFQD
PYASLNPRQSVRTSLAAPLRLHGITAASEIADRIEVMLANVGLTPEQANRYPHEFSGG
QRQRIGIARALILEPEIVVLDEPVSALDVSIRAQIINLLLDLQEKLGLGYLMISHDLS
VVEHMSDRVLVMFFGQVVEEGGWRDIFERPAHPYTRRLIAAIPDPDAALNPGTKDHFA
DVPLPDGRSFAVDGSTAPDVFSAPPPSELVEIAPGHRMRLVPAV"
misc_feature 57300..58094
/locus_tag="SMa0110"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 57306..58010
/locus_tag="SMa0110"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 57441..57464
/locus_tag="SMa0110"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(57450..57455,57459..57467,57594..57596,57834..57839,
57936..57938)
/locus_tag="SMa0110"
/note="ATP binding site; other site"
/db_xref="CDD:73016"
misc_feature 57585..57596
/locus_tag="SMa0110"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 57762..57791
/locus_tag="SMa0110"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 57822..57839
/locus_tag="SMa0110"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 57846..57857
/locus_tag="SMa0110"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 57924..57944
/locus_tag="SMa0110"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 57993..58238
/locus_tag="SMa0110"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:157624"
gene 58298..58612
/locus_tag="SMa5001"
/db_xref="GeneID:6435252"
CDS 58298..58612
/locus_tag="SMa5001"
/note="Has weak similarity to PilT-like proteins and StbB-
like plasmid stability proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000330.1"
/db_xref="GI:193782534"
/db_xref="GeneID:6435252"
/translation="MRKQRVREFPRFGESELLFGIGVLPDGRRKKALTEMLDGVLELF
GDRVLPFDIGAARCYAKLAVTARAAGKEFPTRPTDILPPLPPPGDLSSRQAIPARQSL
PS"
gene complement(58803..59234)
/locus_tag="SMa0112"
/db_xref="GeneID:1235281"
CDS complement(58803..59234)
/locus_tag="SMa0112"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435302.1"
/db_xref="GI:16262509"
/db_xref="GeneID:1235281"
/translation="MQAGGVSMTNAQCACGALRLMLNEPPQLTALCHCLACQRRTGAP
FSANAFYSIDCVEISGVSTEYIRTAESGRKVRMHFCPTCGSTLFWKADASPSWIGVAV
GSFADPAFAPPAMSVFERSKHKWVQLEGTVEHFQDLPIGQY"
misc_feature complement(58818..59216)
/locus_tag="SMa0112"
/note="Glutathione-dependent formaldehyde-activating
enzyme; Region: GFA; cl01553"
/db_xref="CDD:174647"
gene 59703..62264
/locus_tag="SMa0113"
/db_xref="GeneID:1235282"
CDS 59703..62264
/locus_tag="SMa0113"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to sensory transduction
histidine kinase with PAS domain"
/codon_start=1
/transl_table=11
/product="Sensor histidine kinase"
/protein_id="NP_435303.1"
/db_xref="GI:16262510"
/db_xref="GeneID:1235282"
/translation="MKSRESPVYMSNVEEFPLTGRVLTEYEALITSAPTALDAIPGAV
YVCDHEGWLVGYNAEAAELWGRQPSLSAPRERFCGSQRLFLSDGSPMDHQECPMAEAI
KTGVSTRNAEVIIERPDGSRIFALVNIRPLRDHRGVIQGAINCFQDISQQKRIEAEVN
CKSKDLEDFFENSAIGLHIVSAAGIILRANKAELELLGYPADEYVGRHIAEFHADAPV
IGDILDRLSCGEKLDRYPARLRARDGSIKHVLITSNSRFEDGKFVNTRCFTTDITSLH
ETENAWRETEERLAATYQAATIGIAESDADGRLLRVNDAFCTMLGRSREQLLNMTFLD
YTHEDDRDEEARCYARQVSGETDTYAIRKRAVKADGTVIYLDVYSSTVRDRTGRFRYG
VRVLLDVTEAKRMDDRRRESEQHMRDLLEALPAAVYTTDAEGRITFFNKAAVEMAGRT
PQIGDKWCVTWRLYRPDGTYLPHDQCPMAVTLKEDRPVRGEQAVAERPDGTRVPFIPY
PTPLHDVAGKLVGAVNMLVDISDREKAAEYAERLASIVRFSDDAIVSKDTQGIIQTWN
KGAERLFGYSAEEVIGKPINILIPPDRQGEEPGILERIRRDEHIDHYETVRIRKDGSL
IDVSLTVSPLKDARGRVVGASKIARDITERRRSEEHRKLLVNELNHRVKNTLATVQSL
AAQTFRGVNASEDFGRFQSRLVALARAHDVLTRESWQGADLGEVLHATINPICVEPQQ
RVQASGPPLRLRPKMALALSMAFHELCTNAAKYGALTNDGGLIKVNWHVSNIESVSHL
HLQWEEIGGPSVMVPARTGFGTRLLERALARELGGKVDLVFAPSGVRFHIEAPLT"
misc_feature 59811..60164
/locus_tag="SMa0113"
/note="PAS fold; Region: PAS_4; pfam08448"
/db_xref="CDD:117025"
misc_feature 59820..60149
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(59868..59870,59880..59882,59898..59900,59952..59963,
60045..60047,60060..60062)
/locus_tag="SMa0113"
/note="putative active site; other site"
/db_xref="CDD:29035"
misc_feature order(59943..59945,59955..59957,59979..59981,59994..59999,
60081..60083,60087..60089)
/locus_tag="SMa0113"
/note="heme pocket; other site"
/db_xref="CDD:29035"
misc_feature 60198..60545
/locus_tag="SMa0113"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:161776"
misc_feature 60219..60518
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(60267..60269,60279..60281,60297..60299,60336..60338,
60339..60341,60417..60419,60432..60434)
/locus_tag="SMa0113"
/note="putative active site; other site"
/db_xref="CDD:29035"
misc_feature order(60327..60329,60357..60359,60366..60371,60453..60455,
60459..60461)
/locus_tag="SMa0113"
/note="heme pocket; other site"
/db_xref="CDD:29035"
misc_feature 60558..60917
/locus_tag="SMa0113"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:161776"
misc_feature 60588..60899
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(60636..60638,60648..60650,60666..60668,60705..60716,
60795..60797,60810..60812)
/locus_tag="SMa0113"
/note="putative active site; other site"
/db_xref="CDD:29035"
misc_feature order(60696..60698,60708..60710,60732..60734,60741..60746,
60831..60833,60837..60839)
/locus_tag="SMa0113"
/note="heme pocket; other site"
/db_xref="CDD:29035"
misc_feature 60936..61313
/locus_tag="SMa0113"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:161776"
misc_feature 60942..>61103
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cl02459"
/db_xref="CDD:141436"
misc_feature 61320..61679
/locus_tag="SMa0113"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:161776"
misc_feature 61347..61655
/locus_tag="SMa0113"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(61395..61397,61407..61409,61425..61427,61464..61475,
61551..61553,61566..61568)
/locus_tag="SMa0113"
/note="putative active site; other site"
/db_xref="CDD:29035"
misc_feature order(61455..61457,61467..61469,61491..61493,61500..61505,
61587..61589,61593..61595)
/locus_tag="SMa0113"
/note="heme pocket; other site"
/db_xref="CDD:29035"
misc_feature 61632..62261
/locus_tag="SMa0113"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature 61701..61946
/locus_tag="SMa0113"
/note="Histidine kinase; Region: HisKA_2; cl06527"
/db_xref="CDD:157259"
gene 62292..62654
/locus_tag="SMa0114"
/db_xref="GeneID:1235283"
CDS 62292..62654
/locus_tag="SMa0114"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with response regulator
receiver domain"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="NP_435304.1"
/db_xref="GI:16262511"
/db_xref="GeneID:1235283"
/translation="MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALD
IARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGLDTRYSNIPLLTK
PFLDSELEAVLVQISKEV"
misc_feature 62316..62639
/locus_tag="SMa0114"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems...; Region: REC;
cd00156"
/db_xref="CDD:29071"
misc_feature order(62325..62330,62460..62462,62484..62486,62538..62540,
62595..62600)
/locus_tag="SMa0114"
/note="active site"
/db_xref="CDD:29071"
misc_feature 62460..62462
/locus_tag="SMa0114"
/note="phosphorylation site"
/db_xref="CDD:29071"
misc_feature order(62469..62474,62478..62486)
/locus_tag="SMa0114"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 62595..62603
/locus_tag="SMa0114"
/note="dimerization interface; other site"
/db_xref="CDD:29071"
gene 63200..64117
/locus_tag="SMa0116"
/db_xref="GeneID:1235284"
CDS 63200..64117
/locus_tag="SMa0116"
/function="Cell processes; Chaperoning"
/note="glimmer prediction, sequence similarity to DnaJ and
CbpA (co-chaperone-curved DNA binding protein)"
/codon_start=1
/transl_table=11
/product="DnaJ/CbpA-type protein"
/protein_id="NP_435305.2"
/db_xref="GI:193782535"
/db_xref="GeneID:1235284"
/translation="MTDDPYQILGVPRTGKPDEIRKAYRKRAKELHPDLHPGDKEVET
KFKALSAAYHLLSDPEQRARFDRGEIDASGAERPQQHFYRHYADADHARRYGSAGGTG
EFEDVSDIFADLFGQGGAGGRFKARGQDRHYHLELEFLDAVNGARRRITFPDGNTLDL
AIPAGTRDGSTLRLRGKGTPGIAGGEPGDALIEISVRSHSVFRREGNDIEIDLPITLY
EAVLGAKIEVPTISGRVSMTIPKGSNTGDILRLRGKGVKSQHGPAGDQRVTLKVVLPT
ATDPDLERFMETWRRSHAYDPREALGRAT"
misc_feature 63209..64111
/locus_tag="SMa0116"
/note="curved DNA-binding protein CbpA; Provisional;
Region: PRK10266"
/db_xref="CDD:137788"
misc_feature 63209..63373
/locus_tag="SMa0116"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of...; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(63293..63301,63326..63328,63335..63340,63347..63352)
/locus_tag="SMa0116"
/note="HSP70 interaction site; other site"
/db_xref="CDD:99751"
misc_feature 63566..63787
/locus_tag="SMa0116"
/note="DnaJ C terminal region; Region: DnaJ_C; pfam01556"
/db_xref="CDD:144958"
misc_feature 63761..64027
/locus_tag="SMa0116"
/note="DnaJ C terminal region; Region: DnaJ_C; pfam01556"
/db_xref="CDD:144958"
gene 64114..64452
/locus_tag="SMa0117"
/db_xref="GeneID:1235285"
CDS 64114..64452
/locus_tag="SMa0117"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435306.1"
/db_xref="GI:16262513"
/db_xref="GeneID:1235285"
/translation="MKLTERQVLEQFDIVTRKQLRQWVHSGWIVPAQGERGPSFDDVD
VARIRLVCELRRDMNVNDDAVPIILALLDQLYGLRRELRTIATALLEQPDEVRQQLKQ
ALLSPIGQQH"
gene 64679..65206
/locus_tag="SMa0118"
/db_xref="GeneID:1235286"
CDS 64679..65206
/locus_tag="SMa0118"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; partial homology to alcohol"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435307.1"
/db_xref="GI:16262514"
/db_xref="GeneID:1235286"
/translation="MFRLGIGFACFATSAFGLQPLGAAADDPAIARGEYLVTMGGCND
CHTPGYFFGKPDSSRFLGGSDVGFEIPGEGVFIGRNITPDKETGIGSWTREQIVTAIQ
TGQRPDGRMLAPIMPWHAFAQLTKEDAGAIAAFLQSLKPVSHQVPGPFKPGEKVSTFM
FRILPPGETAAAAPK"
misc_feature 64679..65095
/locus_tag="SMa0118"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
gene complement(65491..65658)
/locus_tag="SMa0121"
/db_xref="GeneID:1235287"
CDS complement(65491..65658)
/locus_tag="SMa0121"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435308.1"
/db_xref="GI:16262515"
/db_xref="GeneID:1235287"
/translation="MIRFERKPDPQPSLKEAENKRTKQISEAAKEENKKSGTTGAPRR
APQAADDDRLI"
gene complement(65729..66112)
/locus_tag="SMa0123"
/db_xref="GeneID:1235288"
CDS complement(65729..66112)
/locus_tag="SMa0123"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435309.1"
/db_xref="GI:16262516"
/db_xref="GeneID:1235288"
/translation="MQNSKTSITQQFGSYKPSKAILVWACVATAAATMIVGFNWGGWV
TGGTSRTAAAAAADIARGELASAICVERFNAAPDAAAKLIEFKAITDGYKKRQFVEAG
GWATMPGETAPDSRSVQGCATALAI"
gene complement(66192..67826)
/gene="groEL"
/locus_tag="SMa0124"
/db_xref="GeneID:1235289"
CDS complement(66192..67826)
/gene="groEL"
/locus_tag="SMa0124"
/function="Cell processes; Chaperoning"
/note="60 kDa chaperone family; promotes refolding of
misfolded polypeptides especially under stressful
conditions; forms two stacked rings of heptamers to form a
barrel-shaped 14mer; ends can be capped by GroES;
misfolded proteins enter the barrel where they are
refolded when GroES binds; the rhizobia and high GC
gram-positive bacteria have multiple copies of the groEL
gene which are active under different environmental
conditions; the R. leguminosarum protein in this cluster
is transcribed under anaerobic conditions and is not
necessary for growth"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="NP_435310.1"
/db_xref="GI:16262517"
/db_xref="GeneID:1235289"
/translation="MSAKQIVFSTDARDRLLRGVELLNNAVKVTLGPKGRNVVIDKSY
GAPRITKDGVSVAKEIELEDKFENMGAQMVRAVASKTNDLAGDGTTTATVLAASIFRE
GAKLVSVGMNPMDLKRGIDLGVAAVLAEIKARATKVISSSEIAQVGTIAANGDAGVGE
MIARAMEKVGNEGVITVEEARTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP
YILIHEKKLGSLQAMLPILEAAVQSGKPLLIISEDVEGEVLATLVVNRLRGGLKIAAV
KTPGFGDRRKAMLEDIAVLTAGQMISEDLGIKLENVTLDMLGRARRVLIEKDTTTIID
GSGDKASIQARVSQIKAQIEETASDYDKEKLQERLAKLAGGVAVIRVGGATELEVKEK
KDRIDDALNATRAAVEEGIVPGGGVALLRAKSALVGLTDDNADVTAGISIVRRALEAP
IRQIADNAGVEGSIVVGKLVDGRDHNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDA
GSIASLLITAEAMIADIPERGSPQSTGNGAVDSMGY"
misc_feature complement(66195..67823)
/gene="groEL"
/locus_tag="SMa0124"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12850"
/db_xref="CDD:171769"
misc_feature complement(66255..67817)
/gene="groEL"
/locus_tag="SMa0124"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature complement(order(66258..66278,66285..66287,66450..66452,
66669..66671,66675..66677,67056..67058,67140..67142,
67236..67238,67599..67601,67608..67610,67620..67622,
67644..67646,67650..67652,67680..67682,67686..67691,
67704..67706,67710..67721,67752..67754,67803..67805,
67815..67817))
/gene="groEL"
/locus_tag="SMa0124"
/note="ring oligomerisation interface; other site"
/db_xref="CDD:48161"
misc_feature complement(order(66339..66341,66345..66347,66465..66467,
66582..66584,66633..66635,67377..67379,67554..67556,
67566..67568,67728..67736))
/gene="groEL"
/locus_tag="SMa0124"
/note="ATP/Mg binding site; other site"
/db_xref="CDD:48161"
misc_feature complement(order(66426..66428,66435..66440,66444..66446,
66471..66473,66525..66527,67500..67502))
/gene="groEL"
/locus_tag="SMa0124"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature complement(order(66597..66602,66702..66704,67248..67250,
67269..67271,67404..67406))
/gene="groEL"
/locus_tag="SMa0124"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene complement(67874..68191)
/gene="groES"
/locus_tag="SMa0125"
/db_xref="GeneID:1235290"
CDS complement(67874..68191)
/gene="groES"
/locus_tag="SMa0125"
/function="Cell processes; Chaperoning"
/note="10 kDa chaperonin; Cpn10; GroES; forms
homoheptameric ring; binds to one or both ends of the
GroEL double barrel in the presence of adenine nucleotides
capping it; folding of unfolded substrates initiates in a
GroEL-substrate bound and capped by GroES; release of the
folded substrate is dependent on ATP binding and
hydrolysis in the trans ring"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="NP_435311.1"
/db_xref="GI:16262518"
/db_xref="GeneID:1235290"
/translation="MTFRPLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVG
PGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMGIVANTVPTAA
NAA"
misc_feature complement(67913..68188)
/gene="groES"
/locus_tag="SMa0125"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts...; Region: cpn10; cd00320"
/db_xref="CDD:73192"
misc_feature complement(order(67913..67921,67967..67969,67973..67975,
67988..67990,68018..68020,68081..68086,68165..68167,
68174..68176,68180..68182,68186..68188))
/gene="groES"
/locus_tag="SMa0125"
/note="oligomerisation interface; other site"
/db_xref="CDD:73192"
misc_feature complement(68099..68140)
/gene="groES"
/locus_tag="SMa0125"
/note="mobile loop; other site"
/db_xref="CDD:73192"
misc_feature complement(order(68024..68026,68057..68059))
/gene="groES"
/locus_tag="SMa0125"
/note="roof hairpin; other site"
/db_xref="CDD:73192"
gene 68805..69014
/gene="cspA8"
/locus_tag="SMa0126"
/db_xref="GeneID:1235291"
CDS 68805..69014
/gene="cspA8"
/locus_tag="SMa0126"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; C-terminus with CSD,
'Cold-shock' DNA-binding domain"
/codon_start=1
/transl_table=11
/product="CspA8 Cold shock family protein"
/protein_id="NP_435312.1"
/db_xref="GI:16262519"
/db_xref="GeneID:1235291"
/translation="MTTGTVKWFNSTKGFGFIAPDDGSADVFVHISAVERAGMNSIVE
GQKLGFELERDNKSGKMSAGQLRAA"
misc_feature 68811..68975
/gene="cspA8"
/locus_tag="SMa0126"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein...;
Region: CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature order(68826..68828,68853..68855,68886..68888,68973..68975)
/gene="cspA8"
/locus_tag="SMa0126"
/note="DNA binding site"
/db_xref="CDD:88424"
misc_feature order(68844..68864,68883..68894)
/gene="cspA8"
/locus_tag="SMa0126"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 69135..69515
/locus_tag="SMa0128"
/db_xref="GeneID:1235292"
CDS 69135..69515
/locus_tag="SMa0128"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435313.1"
/db_xref="GI:16262520"
/db_xref="GeneID:1235292"
/translation="MRHPSDNGFAERRNAAADAKRQLLTKFASAPKPTDPEMREKLAA
REAASRARDARRAEREALKTAENERILAEAAASAAAAEAEQRAEAEARQAEISNRVSR
VVADEAARKAERDRRYAARKARRA"
gene 69601..70668
/locus_tag="SMa0130"
/db_xref="GeneID:1235293"
CDS 69601..70668
/locus_tag="SMa0130"
/EC_number="1.14.99.-"
/function="Small molecule metabolism; Fatty acid
biosynthesis"
/note="glimmer prediction, C-terminus with fatty acid
desaturase domain"
/codon_start=1
/transl_table=11
/product="Fatty acid desaturase"
/protein_id="NP_435314.1"
/db_xref="GI:16262521"
/db_xref="GeneID:1235293"
/translation="MSAHVYPPASLVEDNAGAWLKTLAKYRQPRLGRSAFELFVTLVP
FAIFWAAACFSLANGFWPGLIAILPASAFLLRLFMIQHDCGHGSFFSRRGLDDWTGRL
LGVLTLTPYDYWRRAHAAHHATAGNLDERGVGDITTLTITEYCALSPIKRLGYRLYRH
PLVMFGIGPAWLFLFKQRLPFGMMNSGALPWISTMATNFAIVTLAALMVWAVGLGTFL
LIHLPVVLLAGAAGVWLFYVQHQFEETHWSAGEDWRFPQAALHGASHYDLPPVLRWLT
GNIGIHHVHHLSSRIPYYRLPEVLRDHPQLAGIGRITLWDSLKCVRLVLWDDRRRRLV
SFHDAAGSLRRSLTEDGRKTK"
misc_feature 69697..70488
/locus_tag="SMa0130"
/note="The Delta12 Fatty Acid Desaturase
(Delta12-FADS)-like CD includes the integral-membrane
enzymes, delta-12 acyl-lipid desaturases, oleate
12-hydroxylases, omega3 and omega6 fatty acid desaturases,
and other related proteins, found in a wide range of...;
Region: Delta12-FADS-like; cd03507"
/db_xref="CDD:58173"
misc_feature 69775..70548
/locus_tag="SMa0130"
/note="Fatty acid desaturase; Region: FA_desaturase;
pfam00487"
/db_xref="CDD:144179"
misc_feature order(69844..69846,69856..69858,69952..69954,69961..69966,
70444..70446,70453..70458)
/locus_tag="SMa0130"
/note="putative di-iron ligands; other site"
/db_xref="CDD:58173"
gene 70668..70955
/locus_tag="SMa0132"
/db_xref="GeneID:1235294"
CDS 70668..70955
/locus_tag="SMa0132"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435315.1"
/db_xref="GI:16262522"
/db_xref="GeneID:1235294"
/translation="MIELTPTQIRGLKLAKDGDVHPQAGKRWTHLNAQVTYAKQDRFK
ERPQKIKFLTTATLNELRDHRLVKALNTDVPPEESAHGITMAGKMLLLKIK"
gene complement(71066..71671)
/locus_tag="SMa0134"
/db_xref="GeneID:1235295"
CDS complement(71066..71671)
/locus_tag="SMa0134"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; similar to Smb20087 of S.
meliloti pSymb"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435316.1"
/db_xref="GI:16262523"
/db_xref="GeneID:1235295"
/translation="MRTVTGLFDDYGDAREAVSDLEAAGVPSDDISIVANNIGDRYST
DGSNAAEGAGTGAGLGAAGGGVVGLLTGLGLMAIPGVGPVVAAGWLASTAAGAAAGAI
AGGAAGGLIGALTESGVDEEDAHVYAEGVRRGGTLVTARVEDSVAPRAEAILKQRKIV
DPAARRSIYAQEGWSRFDENADPYTLDQVDRERERYRSMMP"
gene complement(71712..72026)
/locus_tag="SMa5002"
/db_xref="GeneID:6435253"
CDS complement(71712..72026)
/locus_tag="SMa5002"
/note="Similar to S; meliloti SMb20086 and to
Agrobacterium tumefaciens Atu5288 & Atu5493"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000331.1"
/db_xref="GI:193782536"
/db_xref="GeneID:6435253"
/translation="MKNIIIVAAALMSAATTASLAQTTPSSEGETPAVATPDSQNPTA
PVEGANSFTEAQAKERIEEAGYTDVSGLKLDDKGVWQATAMKEGKSVSVALDYQGNVT
AQ"
gene 72274..74286
/locus_tag="SMa0136"
/db_xref="GeneID:1235296"
CDS 72274..74286
/locus_tag="SMa0136"
/function="Miscellaneous; Unknown"
/note="glimmer prediction, partial conserved with
hypothetical membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435317.2"
/db_xref="GI:193782537"
/db_xref="GeneID:1235296"
/translation="MLKFSRGIDQDRAATAGGLQQIAFARGSAAAAQPSRLPTLVATA
AAVAVLYFARDVFLPLAIAILLTFALAPLVSRLRRVGCPRSVAVIGTVTTAFLFLSAF
GVVIAMQVSEVAQNLPTYQYNIVEKVRTLKETGSESQILERIGRVIERISTEISRPEP
EVRASPEPTPETKPLLVEIFSPQRPIETLKNIINPLLGPLATTGLVIVVVIFMLLERE
ELRDRFIRLVGYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIGLSLLGIPN
AVLWGMLAIVLRFVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIVLELLSNNVV
EPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLVVLGRHVPQFEFLEIL
LGNEPVLDPKERLYQRLLAGDPDEATDNAEDMLQEKYLVEFYDTVAIPALLLAERDRA
RGALTNTQAAQIAQSANTLIANLEEIAGEEEGEEETSTEAQESDDDNDDAEEYDLPPG
DGKSVLCVGGRSDLDDVTASMLAQTLWIQGADAAHATHEVLKAGNIKALQLEGRNAVV
LSVLDQDFMRHAKFTVRRLKRIAPAARVGIVLWKEDGRPGTTERDQLIESLQADFVVF
GMGDAVREALSDELPRSLKLAHPKIAPGYAMRRSKRTDTESTVKAD"
misc_feature 72493..73410
/locus_tag="SMa0136"
/note="Domain of unknown function DUF20; Region: UPF0118;
cl00465"
/db_xref="CDD:174221"
gene 74378..76579
/locus_tag="SMa0137"
/db_xref="GeneID:1235297"
CDS 74378..76579
/locus_tag="SMa0137"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction, C-terminus similar to nitrogen
fixation positive activator protein"
/codon_start=1
/transl_table=11
/product="Diguanylate cyclase/phosphodiesterase"
/protein_id="NP_435318.2"
/db_xref="GI:193782538"
/db_xref="GeneID:1235297"
/translation="MRFVAGKVAVFRWMLPLAIAMALMGGIYLAVRWSAQQSDAVAVK
RQQHLVELVISKMQGSIAHDQESVTVWDDAVRKVSQEWDPRWVDSNLGSWMNSYFRHD
GAFVISPDRKPLYAFLAGQTNEQEAFSEIGPEAMPLIAKLQERLAAGDEGGTSEQVLS
IGESDLVRIGGRPAIISVKPIVSDTGDIVQEPGREYLHLAARFLDGDFLTHLGDDYGF
EDLRFSVLPELGRQRSYAPIVSSSRETIGYFSWLPFRPGADVMKATAPVLLVAGALLF
ALTSALSVVLRRRSRRLQESQAELDHLARHDPLTGLANRASFNRLLARVVATSTIDQA
NALLYLDLDRFKQVNDTLGHPVGDRLMVEVAKRLKETAAGAAISRIGGDEFTIIVART
RQDEVEKLCDALIAAIRRPFEIDGQPILIGLSIGVAVATGNDADPIEITRKADIALYH
AKSAGRNRYAVFGPHMDELIRTKRDLEQDLRAALDAGNQLEVFYQPVYSAQSHEISSL
EALIRWRHPSKGPIAPDAFVPLAETAGLIDRLGAFVLKEACSTAREFPGLDIAVNVSA
VELAQRHYAAQVLSLLRQFGIEPSRLELEITETALLDEAGVCEKNITALREFGVKFAL
DDFGTGFSSFGRLQRLEVDRIKIDRSFVHAFDRPGGGVAVVQSIVGIAHAKGLRITAE
GVETEEQSEILRKLGCDELQGFHLSRPMSKNSLRQLLGADKAQGTSSSSRS"
misc_feature 74378..75163
/locus_tag="SMa0137"
/note="CHASE4 domain; Region: CHASE4; cl01308"
/db_xref="CDD:154325"
misc_feature 75290..75757
/locus_tag="SMa0137"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(75398..75400,75524..75526)
/locus_tag="SMa0137"
/note="metal-binding site"
/db_xref="CDD:143635"
misc_feature order(75413..75415,75422..75427,75437..75439,75449..75451,
75512..75514,75518..75529)
/locus_tag="SMa0137"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(75500..75502,75584..75586)
/locus_tag="SMa0137"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 75809..76510
/locus_tag="SMa0137"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(76655..76975)
/locus_tag="SMa0139"
/db_xref="GeneID:1235298"
CDS complement(76655..76975)
/locus_tag="SMa0139"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435319.1"
/db_xref="GI:16262526"
/db_xref="GeneID:1235298"
/translation="MLTVDFTVAGILNGGPAFKHNEAFSFQIATDDQEETDRYWNAIV
GNGGQESACGWCKDKWGISWQITPRVLAEAMAAGGDEAKRAFEAMMTMKKIDVAAIEA
ARRG"
misc_feature complement(76676..>76975)
/locus_tag="SMa0139"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; cl00411"
/db_xref="CDD:174185"
gene complement(77422..78822)
/locus_tag="SMa0142"
/db_xref="GeneID:1235299"
CDS complement(77422..78822)
/locus_tag="SMa0142"
/EC_number="3.4.21.-"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of proteins, peptides,
glycopeptides"
/note="glimmer prediction; C-terminus with peptidase S8
(Subtilase family) domain"
/codon_start=1
/transl_table=11
/product="protease"
/protein_id="NP_435320.1"
/db_xref="GI:16262527"
/db_xref="GeneID:1235299"
/translation="MLTKLKLALIAPIAAIALVSGDILAPGNMIVREVIGTGLALADD
DDDDGGSGGNRGSGGSGRSGSYGAGAGWSGGKSLFPFREFLPRRSIPRRSRAAAPAAP
IRAPDEIVGLGFSPTELGELTATGFEVLERNTMTSFNAEVIKLRIPRRLTLEAARQRA
RAAAPQAVIDFNHYFRPEQHPDAPCVTSDCLARDVIGWPSAQTGLSNCAAGVRIGLVD
TAINPDHLAFEARNIEIVRLVEEELPESGRQHGTAVAALLVGSASSRTPGLIPGGKLI
AVDAFHRGERQDDRSAAFDLARALDLLTRRQVQVINLSLAGPPNLLLEQAVMKAGERG
IIMVAAAGNDGPKAEPVYPAAYEEVIAVTATDRRKRPYRRAGRGEHIDFAAPGVAVWT
AASVSGARPKTGTSFAAPFVTAAVAMMKASEPDLAPEMIHSRLSGHAEDLGDPGKDAV
FGWGLLNARAICKTKS"
misc_feature complement(77461..78189)
/locus_tag="SMa0142"
/note="Peptidase S8 family domain, uncharacterized
subfamily 4; Region: Peptidases_S8_4; cd05561"
/db_xref="CDD:173797"
misc_feature complement(order(77605..77607,77794..77796,77878..77880,
77938..77940,78073..78075,78169..78171))
/locus_tag="SMa0142"
/note="active site"
/db_xref="CDD:173797"
misc_feature complement(order(77605..77607,78073..78075,78169..78171))
/locus_tag="SMa0142"
/note="catalytic triad; other site"
/db_xref="CDD:173797"
gene 78965..79507
/gene="rpoE6"
/locus_tag="SMa0143"
/db_xref="GeneID:1235300"
CDS 78965..79507
/gene="rpoE6"
/locus_tag="SMa0143"
/function="Macromolecule metabolism; Macromolecule
synthesis, modification; RNA synthesis, modification, DNA
transcription"
/note="glimmer prediction; partial homology with RNA
polymerase sigma factor; with Sigma-70 factor (ECF
subfamily) domain"
/codon_start=1
/transl_table=11
/product="RNA polymerase ECF sigma factor"
/protein_id="NP_435321.2"
/db_xref="GI:193782539"
/db_xref="GeneID:1235300"
/translation="MSNAVKDVGERLMAFLPNLRRFAISLCGSRDVADDLVQSACERA
LASAERFEPGTRFDAWIFRILRNLWIDQVRRQKTAGVQDDITERHDIAGSSGERETEA
RLTLKTVAEAITELPDEQREVVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSLA
EAAGITQATGRSQSMKGANE"
misc_feature 78965..79459
/gene="rpoE6"
/locus_tag="SMa0143"
/note="RNA polymerase sigma factor; Provisional; Region:
PRK12547"
/db_xref="CDD:139056"
misc_feature 79001..79195
/gene="rpoE6"
/locus_tag="SMa0143"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 79289..79441
/gene="rpoE6"
/locus_tag="SMa0143"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(79313..79315,79343..79345,79361..79366,79394..79396,
79400..79405,79409..79417,79421..79426,79430..79432)
/gene="rpoE6"
/locus_tag="SMa0143"
/note="DNA binding residues"
/db_xref="CDD:100119"
gene 79504..80289
/locus_tag="SMa0144"
/db_xref="GeneID:1235301"
CDS 79504..80289
/locus_tag="SMa0144"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435322.1"
/db_xref="GI:16262529"
/db_xref="GeneID:1235301"
/translation="MTRADFSDEILMRFADGELDTGTAAEVERAMETDDALVARVALF
IETRHAAKAAMEPLLDEPVPSELKRAVERMVMEKTSPPSVSGAGILPFPRRAANESHR
SRWLAPVAASLAAVVAGFGGYWLRGSVEAPIEGGLGVAAIGSPALDEALATVAAGEER
RLPGSDQRFRAIATFRDNAQALCREFELDSDDRSTVVSVACRAGSEWRVTFAVIAPGA
TGGYAPASSTETLDAYLTAIDAGAPLEAAEEARALSELQGAQR"
misc_feature 79504..80181
/locus_tag="SMa0144"
/note="Predicted transmembrane transcriptional regulator
(anti-sigma factor) [Transcription]; Region: COG5662"
/db_xref="CDD:35221"
gene complement(80295..80819)
/locus_tag="SMa0146"
/db_xref="GeneID:1235302"
CDS complement(80295..80819)
/locus_tag="SMa0146"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435323.1"
/db_xref="GI:16262530"
/db_xref="GeneID:1235302"
/translation="MSGPRSLVAPSTFPQSQRPVCHSLPGRYDRSDRFELELDERFEE
EFDELFEDELELEFEELLDEELELELLEELELELLEELELELDELLPATMISPSVRPV
WAVCVEVRSTPGNKGAYSLASAAEPTNAARPAAIALFVQFFAISSTPCENRTGSSVRR
SNGRCAPLFHDRNF"
gene complement(80960..81673)
/locus_tag="SMa0148"
/db_xref="GeneID:1235303"
CDS complement(80960..81673)
/locus_tag="SMa0148"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435324.1"
/db_xref="GI:16262531"
/db_xref="GeneID:1235303"
/translation="MLSFLKKDPQVIQFVCHPEDDGVIAPPLPAKSVLPDWFRRLPAV
DKGHLSATNNGLTVKRCMPFLDAMTTGWILPIAATVRLDVKDDGRSVDAGWEFDRVMV
SNHGAHQVAGNPKEPSPPCKFHNYWSIRTPPGWSCLFLPPLNRPGQPFECVAGIVDTD
SYSAHIHFPFFATAPDGLHVVEKGTPLVQVIPFRRADAAVTAEIRAETRAEATEREAI
HRNTLAGEGWYRKSARAAR"
gene 81858..82340
/locus_tag="SMa0149"
/db_xref="GeneID:1235304"
CDS 81858..82340
/locus_tag="SMa0149"
/function="Miscellaneous; Unknown"
/note="activates RNA polymerase to cleave back-tracked RNA
during elongational pausing"
/codon_start=1
/transl_table=11
/product="transcription elongation factor regulatory
protein"
/protein_id="NP_435325.1"
/db_xref="GI:16262532"
/db_xref="GeneID:1235304"
/translation="MSVAFIKEESAETASETLLPDRPISPHPNLVTETGLKALELHLQ
QAREAFDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVT
FSRDDGRVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASVGDQELEILAIS"
misc_feature 81858..82337
/locus_tag="SMa0149"
/note="transcription elongation factor regulatory protein;
Validated; Region: PRK06342"
/db_xref="CDD:168530"
misc_feature 82134..82337
/locus_tag="SMa0149"
/note="C-term; Region: GreA_GreB; pfam01272"
/db_xref="CDD:144753"
gene complement(82374..83900)
/locus_tag="SMa0150"
/db_xref="GeneID:1235305"
CDS complement(82374..83900)
/locus_tag="SMa0150"
/EC_number="6.2.1.-"
/function="Small molecule metabolism; Fatty acid
biosynthesis"
/note="catalyzes the formation of malonyl-CoA from
malonate and CoA"
/codon_start=1
/transl_table=11
/product="malonyl-CoA synthase"
/protein_id="NP_435326.1"
/db_xref="GI:16262533"
/db_xref="GeneID:1235305"
/translation="MSNHLFDAIRRAARPDSAFILTADGRVWTYGDMLEHSGRIASVL
DALGVRPGDRVAVQVEKSPEALMLYLACLRTGAVYLPLNTAYTLAELDYFFGDAEPRL
IVCAPGAKEGIAKHAADCGAEVETLDEKGGGSLIDLARGKAPDFPDADRGPDDLAAIL
YTSGTTGRSKGAMLTHDNLLSNATTLREYWRFTADDRLIHALPIFHTHGLFVASNVIL
LAGASMFFLPKFDANEVLRLMPQSTSMMGVPTFYVRLVQNPGLTHEATAGMRLFVSGS
APLLAETHRTFAQMTGHAILERYGMTETNMNTSNPYDGERIAGTVGFPLPGVSLRVAD
PESGRPLPKGETGMIEVKGPNVFKGYWRMPEKTQGEFRADGFFITGDLGRIDERGYVH
IVGRGKDLVISGGYNIYPKEVETEIDQMPGVVETAVIGLPHPDFGEGVTAVVVRKPGA
AIDERAILDGLEGRLARYKQPKRVIFVDDLPRNTMGKVQKNVLRETYARLYAGAEARV"
misc_feature complement(82395..83900)
/locus_tag="SMa0150"
/note="malonyl-CoA synthase; Validated; Region: PRK07514"
/db_xref="CDD:168985"
misc_feature complement(82407..>83417)
/locus_tag="SMa0150"
/note="Acyl-protein synthetase, LuxE; Region: LuxE;
cl10450"
/db_xref="CDD:175215"
gene complement(83897..86626)
/locus_tag="SMa0151"
/db_xref="GeneID:1235306"
CDS complement(83897..86626)
/locus_tag="SMa0151"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="predicted by codon usage pattern and blastx.
N-terminus of putative protein is similar to eukaryotic
malonyl CoA decarboxylase, mitochondrial precursor.
C-terminus is similar to various membrane proteins
including those for C4 dicarboxylic acid transport"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435327.2"
/db_xref="GI:193782540"
/db_xref="GeneID:1235306"
/translation="MIVACLFVLLATGMPIAFALGLAAFAALYMQSGAGIFYVLGDTM
FSGIANLAYVSIPMFVLMGAAVASSPAGSDLYTSLDRWLNRIPGGLILSNIGACAIFS
GMTGSSPATCAAIGKMGIPEMMRRGYPASVASGSIAAGGTLGILIPPSVTLIVYGIAT
ETSIGRLFMAGILPGILLTIMFMTWAVIDCKRKGYEFEARLVRYSMKERLAVLPRILP
FLLIIAGTLYVLYGGIATPSEAAGAGAFLTLAVVIVAYRLFRFRPVAGIFGSAMKESV
MIMMIMAAAELFAFALSSLFITQTVAAAIADMEVNRWVLMAVINVFLLICGMFLPPVA
VIVMTSPMLFPIVTQAGFDPYWFAIVLTINMEVGLITPPIGLNLFVINAIAPQIPTKD
ILWGSLPYVLVMFLAIILLCVFPDVATWLPNQMLGDRPMNTTSFFSDMLQSIAERGRR
FLSLGPARNGDVNPVGTMEALCDTLLSSRGEASGMALAKNILDRWQGFDQDKRRDFML
ALLSRFGPDIERLERAIDAYRADPTPKALLEMSMAAEPRRQELIRRLNLAPNGIATLV
RMRADLLELKAQNPDLEAVDTDFAHLFGSWFNRGFLVLRPISWSTPADILEKIIRYEA
VHHIGGWDELRRRLAPEDRRCFAFFHPQLVDDPLIFVEVALTREMPPNIADLLKEDRA
PIRATDATTAVFYSISNCQEGLRGISFGNFLIKQVVEDLRRDLPRLDTFVTLSPVPGF
ADWLSRERQAETSNALSAADRSRLAALDEPDWADQPEIAAAIQPSLTAAAAWYFLRAR
NRNGKTVDPVARFHLGNGARLERINFLGDRSERAMRQAHGLMVNYLYKLDDIETNHEA
FATRGEVVAAPAIRRLIPADRSSRSLVPGPNVFPPGVRSADAPGRKGDKEFTS"
misc_feature complement(85382..86620)
/locus_tag="SMa0151"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature complement(85352..86497)
/locus_tag="SMa0151"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl09110"
/db_xref="CDD:175004"
misc_feature complement(84089..85099)
/locus_tag="SMa0151"
/note="Malonyl-CoA decarboxylase (MCD); Region: MCD;
pfam05292"
/db_xref="CDD:114040"
gene complement(86647..87216)
/locus_tag="SMa0155"
/db_xref="GeneID:1235307"
CDS complement(86647..87216)
/locus_tag="SMa0155"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435328.1"
/db_xref="GI:16262535"
/db_xref="GeneID:1235307"
/translation="MLKAYSRAVGNASRGLAAVATALLIAAMLVVCQMIMQRYVFRQA
TIWQTDFVVFSATAAMFLGAPYVLLKGGHVGIDVVEMVVGERTRYVLRIIAGLLGLLF
CAVMLIATWIQFHDAWAGNWKHSSVWAPPLWVPLAALPVSFAMLCLQYVAQILTLLTA
PAVPAAMGHGAAEPGSAPGADRHPQEIIQ"
misc_feature complement(86677..87216)
/locus_tag="SMa0155"
/note="Tripartite ATP-independent periplasmic
transporters, DctQ component; Region: DctQ; cl01181"
/db_xref="CDD:174571"
gene complement(87283..88287)
/locus_tag="SMa0157"
/db_xref="GeneID:1235308"
CDS complement(87283..88287)
/locus_tag="SMa0157"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435329.1"
/db_xref="GI:16262536"
/db_xref="GeneID:1235308"
/translation="MSSFRRKLTTSAVAAICSLVASTAGAQTVLKASHQFPGGKGDIR
DEMVQLIAREVAAANVGLEIQVFPGSSLYKPNDQWNAVTRGLLDMTSFPLDYASGRHP
EFSATLMPGLVGNFDRAMRLNDSEFMGDIKKVIENAGALVIADAWLSGAFASKKNCIT
SPDTIKGQVIRAAGPAFEEMLVEAGASISSMPSSEIYTGMQTGVLDAANTSSASFVSY
RLFEQAKCLTAPGENALWFMYEPVLVSKRVFDGLTEEQQKAILAAGEKAEVYFNEEVR
KGDQVMIDTYKKAGVEVVEMSKEDYDAWLELAKASSYKNFAANVPGGDKLIEKALAVK"
misc_feature complement(87286..88287)
/locus_tag="SMa0157"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; cl00710"
/db_xref="CDD:153950"
gene 88416..89090
/locus_tag="SMa0160"
/db_xref="GeneID:1235309"
CDS 88416..89090
/locus_tag="SMa0160"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435330.1"
/db_xref="GI:16262537"
/db_xref="GeneID:1235309"
/translation="MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPI
REALMQLSAIGLVEIRPRRGAVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDS
AALLAAHEKCREAVLSEETDRYYYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRR
LQLRVRNRMKVSFREHGEIVEAILSGNTDGAREGLRSHVAVQGDRFGDLVANLSNRER
RSGRLG"
misc_feature 88416..89069
/locus_tag="SMa0160"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 88428..88616
/locus_tag="SMa0160"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(88431..88433,88500..88502,88503..88508,88530..88544,
88548..88553,88560..88562,88590..88595,88599..88610)
/locus_tag="SMa0160"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 88644..89015
/locus_tag="SMa0160"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene complement(89275..89520)
/locus_tag="SMa0162"
/db_xref="GeneID:1235310"
CDS complement(89275..89520)
/locus_tag="SMa0162"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435331.2"
/db_xref="GI:193782541"
/db_xref="GeneID:1235310"
/translation="MTISSNRCTALIVTVLPFATLIDREKFDEISTESPFADAGGLTP
MPVHRATTKQKNAKREPLDLVMVPVFLHDTRHNVALS"
gene 89324..90724
/gene="pilQ2"
/locus_tag="SMa0163"
/db_xref="GeneID:1235311"
CDS 89324..90724
/gene="pilQ2"
/locus_tag="SMa0163"
/function="Structural elements; Cell exterior; surface
structures"
/note="similar to hypothetical 44.3 kDa protein Y4XJ in
Rhizobium sp. NGR234"
/codon_start=1
/transl_table=11
/product="PilQ2 pilus assembly protein"
/protein_id="NP_435332.2"
/db_xref="GI:193782542"
/db_xref="GeneID:1235311"
/translation="MTRSRGSLFAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRS
IKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKN
PVGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIAS
RFAGDEEVINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSP
RATSNTPAGSLIGSLIGEGYSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGE
FPIPISEQDGTITVSYKKFGVGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIA
IPGFSVRRARTSVDLKSGQSFMIAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQR
RETDLVIIVTPHLVKPIDPLKKVASPSDRTKRPTEAEFFLGNIDEVEVNGRGRSASRQ
ARVVRAPSSGHFLELQ"
misc_feature 89405..90640
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Flp pilus assembly protein, secretin CpaC
[Intracellular trafficking and secretion]; Region: CpaC;
COG4964"
/db_xref="CDD:34571"
misc_feature 89696..89851
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Putative phospholipid-binding domain; Region: BON;
cl02771"
/db_xref="CDD:155094"
misc_feature 90059..90544
/gene="pilQ2"
/locus_tag="SMa0163"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; cl02829"
/db_xref="CDD:164025"
gene 90721..91017
/locus_tag="SMa0164"
/db_xref="GeneID:1235312"
CDS 90721..91017
/locus_tag="SMa0164"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435333.1"
/db_xref="GI:16262540"
/db_xref="GeneID:1235312"
/translation="MIRRSSRPRGFPGLLFASSILLSGCQNHELVRSETIALSAGDAI
AANSVMQMVDPWPPRVKQTSLATPADLEQYKPQQPNAEQNGGNGETYPNDTTTQ"
gene 91039..91569
/locus_tag="SMa0166"
/db_xref="GeneID:1235313"
CDS 91039..91569
/locus_tag="SMa0166"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435334.1"
/db_xref="GI:16262541"
/db_xref="GeneID:1235313"
/translation="MEMTTGASGRSVLGRSGGGRRPTELVMAIVATVILSSCQTSEVL
SGAEFDPTSALASSGDVSKSDLDQGKLQFMNGNYGLAEKHFRKAVELRQDNAEALMGL
AACYDRLGRFDLADRAYNQLLKVAGRQPRIVNNMGYSQYLRGEKAKARKLLLEARAAS
PGDETIEANLALLDRS"
misc_feature 91234..91470
/locus_tag="SMa0166"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi...; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(91234..91239,91246..91251,91336..91341,91345..91350,
91357..91362,91438..91443,91450..91455,91462..91467)
/locus_tag="SMa0166"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(91243..91245,91279..91281,91291..91293,91300..91302,
91345..91347,91381..91383,91393..91395,91402..91404,
91447..91449)
/locus_tag="SMa0166"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 91653..92465
/locus_tag="SMa0168"
/db_xref="GeneID:1235314"
CDS 91653..92465
/locus_tag="SMa0168"
/function="Macromolecule metabolism; Macromolecule
synthesis, modification; RNA synthesis, modification, DNA
transcription"
/note="glimmer prediction; with ribosomal RNA adenine
dimethylases domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435335.1"
/db_xref="GI:16262542"
/db_xref="GeneID:1235314"
/translation="MAMASDVLARSFGKEAFGLDPQNYHTARPAYPELVWDALRNRAG
LRRGISILEIGAGTGLATERLLEDRPHRLLAVEPDRRLARFLRGRLDKEELEVVETPF
EKLKVPEKSFDLVVSATAFHWIDAAPALRRIHRLLRAGGTVALFWNVFGDGVRPDPFH
RATAHLFSGHRTSPSGGGTTKTPYGLNVGARLGELAEAGFTADEPELIDWTLALDPPA
VRRLYATYSNVTALPADERERLLSGLEKIAETEFAGVVTRNMTTSVYTGRRE"
misc_feature 91761..92426
/locus_tag="SMa0168"
/note="hypothetical protein; Provisional; Region:
PRK08317"
/db_xref="CDD:169372"
misc_feature 91803..92087
/locus_tag="SMa0168"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy)...; Region:
AdoMet_MTases; cd02440"
/db_xref="CDD:100107"
misc_feature order(91812..91832,91881..91886,91950..91958,92004..92006)
/locus_tag="SMa0168"
/note="S-adenosylmethionine binding site; other site"
/db_xref="CDD:100107"
gene 92526..93311
/locus_tag="SMa0169"
/db_xref="GeneID:1235315"
CDS 92526..93311
/locus_tag="SMa0169"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="putative methyltransferase"
/protein_id="NP_435336.1"
/db_xref="GI:16262543"
/db_xref="GeneID:1235315"
/translation="MALDRADFYDAELARHNRQLRVAADFGADDRVLDIGCGAGQTTR
EAARAAPQGEAIGVDISAEMLEEARRRSAAEGLRNAMFEQGDAQFHGFPTGSFDLCIS
RFGVMFFADPAAAFANIGRAMRPGARLVWMVWQSRERNEWSRAIRQALAPAIAVSAGA
ANPFSLGDPPVATDLLSAAGFTSIDFADVQEPVFYGSDVDAAFDALTSLYLVQDALAS
TNEPPDKPLQRLRDLLEGHMTPEGVFFDSRAWIITARRAGGGG"
misc_feature 92616..92915
/locus_tag="SMa0169"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy)...; Region:
AdoMet_MTases; cd02440"
/db_xref="CDD:100107"
misc_feature order(92628..92648,92700..92705,92778..92786,92832..92834)
/locus_tag="SMa0169"
/note="S-adenosylmethionine binding site; other site"
/db_xref="CDD:100107"
gene complement(93492..94256)
/locus_tag="SMa0171"
/db_xref="GeneID:1235316"
CDS complement(93492..94256)
/locus_tag="SMa0171"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435337.1"
/db_xref="GI:16262544"
/db_xref="GeneID:1235316"
/translation="MNATKLLLILPLLAAFAYISLVSLTYLSQRALLYPGASATPAPE
RASWGQNASIQTPDGETLHGLYSRGEPGQPSVLFFLGNADRVSNYGFFAQALAARGIG
LLALSYRGYPGSSGTPNEHGLLIDGIAAFDWLAARSGNEIVVLGQSLGSGVAVDTAGK
RPAVAVILVSAYLSVLSLAQTYYPFFPVALLTKDPFRSDLKIAGVRQPEAVYPRPARH
HHPIVFGRSSVSDRSRAQADAHLRCRPQRSVGCPHG"
misc_feature complement(93534..94196)
/locus_tag="SMa0171"
/note="Hydrolases of the alpha/beta superfamily [General
function prediction only]; Region: COG1073"
/db_xref="CDD:31271"
gene 94473..95393
/locus_tag="SMa0172"
/db_xref="GeneID:1235317"
CDS 94473..95393
/locus_tag="SMa0172"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; C-terminal homology with
hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435338.1"
/db_xref="GI:16262545"
/db_xref="GeneID:1235317"
/translation="MSNSKDEVERIDWLEAELADTIDEDYELELSEPTLSEKIREIYR
KAHPPALPRMDYFRALLALQAELIKLQDWVVYHKQKVVVIFEGRDAAGKGGVIKRITQ
RLNPRIVRTVALPAPSDREKTQWYFQRYVPHLPAGGEIVLFDRSWYNRCGVERVMGFA
TEEEVEQFFDDVPEFERMLVRSGVRLVKYWFSITDEEQQLRFLTRIHDPLKQWKLSPM
DLQSRVRWEAYTKAKEETFARTNIREAPWHIVEANDKKRARLNCIDHLLKQIPYEDVP
HEDITLPERIFNPNYERKVLPPELYVPAKY"
misc_feature 94623..95306
/locus_tag="SMa0172"
/note="Polyphosphate kinase 2 (PPK2); Region: PPK2;
cl11971"
/db_xref="CDD:164310"
gene complement(95789..96871)
/locus_tag="SMa0175"
/db_xref="GeneID:1235318"
CDS complement(95789..96871)
/locus_tag="SMa0175"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; partial homology with
hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435339.1"
/db_xref="GI:16262546"
/db_xref="GeneID:1235318"
/translation="MERGDKEQENLSRLEQAAQQTADPKTMQQKATKGPEEKLRFSLR
KKDVWWTVGLAAAALLLFGIQVLINWRLDWLDVPLRLRVMNYVKGGLLIFIMLTVANV
IEVFLIGRIPNRVSRFNLKRIFRLVVVVAIVFVAISVLFVNWYAAFVSLGLISLILGF
ALQMPISSFIAWIYILARAPYRVGDRIRIGDAHGDVIDVSYLDTTLWEFGGEYLWTDH
PSGRIIKFPNSTVFDTPVFNYSWPLFPYVWNEIKFQLAYESDLEFVARTMREVVEEQV
GDIMSQKVKIYKHILSNTPVDELEVKEHPVVHFRVSENTWLEAIVRYLVPPKEAGRTK
TRLIKEMLARMNAEPDRVLFPKSNLR"
misc_feature complement(95828..96445)
/locus_tag="SMa0175"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:144501"
gene complement(98400..99317)
/locus_tag="SMa0179"
/db_xref="GeneID:1235319"
CDS complement(98400..99317)
/locus_tag="SMa0179"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; similar to glycine cleavage
system transcriptional activator, with bacterial LysR
regulatory helix-turn-helix protein domain"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435340.1"
/db_xref="GI:16262547"
/db_xref="GeneID:1235319"
/translation="MHRPRLPPLSALRAFEAAARLASFKAAAEELLVTPTAISHQIKQ
LEAHMSLRVLDRTPRAVTLTPRGKALYEATAAGFGEIERVVTRLLAETAPTTVTLTST
IAFLSHWLVPRMDALRQTIPNIDLRLHASNKVEELRSGGIETAIRYGRGPFAGTASMQ
LCSDAMTPVCSPSLGLSQLGDLRRVTLIHIDGRSRPAPKPDWNRWCEQAGITDLDTSA
GPRFPDSMLAVQAAIAGQGVVIASRVLVADALATGLLEAPFTQSLAGDAYHFACALGL
EQRTDIAALRMWFQNCFSAAEPDPAHRLP"
misc_feature complement(98448..99308)
/locus_tag="SMa0179"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:170976"
misc_feature complement(99114..>99230)
/locus_tag="SMa0179"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature complement(98454..99032)
/locus_tag="SMa0179"
/note="HvR and beta-lactamase regulators, and that of
other closely related homologs; contains the type 2
periplasmic binding fold; Region:
PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432"
/db_xref="CDD:176123"
misc_feature complement(order(98928..98948,98952..99005,99009..99032))
/locus_tag="SMa0179"
/note="dimerization interface; other site"
/db_xref="CDD:176123"
misc_feature complement(order(98583..98585,98643..98651,99003..99005,
99009..99014))
/locus_tag="SMa0179"
/note="substrate binding pocket; other site"
/db_xref="CDD:176123"
gene 99435..100307
/locus_tag="SMa0180"
/db_xref="GeneID:1235320"
CDS 99435..100307
/locus_tag="SMa0180"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="epimerase"
/protein_id="NP_435341.1"
/db_xref="GI:16262548"
/db_xref="GeneID:1235320"
/translation="MVELIAGLIDVFADVPLTGNPLAVVQDADGLTDDQMRRIAGEFN
QAETTFLMRSTRADWKLRSFTASGAEVFGAGHNALGAWLWLAENGDLGSLTAARTFQQ
EIGRDVLPIELESVGGRIHGRMRQVPLRLSDPLDDVAPLADALGLDPRDILPEPPARP
ADTGATHLMVRVLNVDSVDRALPVADKLLAVLEKTPAEGCYIYALDADAPDTAYARFF
NPSVGLWEDAATGTAAGPLAAYLAATGNLTNNELVIEQGTKMGRRSILRIRLAPLPEL
SGAGIVVVKGVIRL"
misc_feature 99435..100304
/locus_tag="SMa0180"
/note="Predicted epimerase, PhzC/PhzF homolog [General
function prediction only]; Region: COG0384"
/db_xref="CDD:30733"
misc_feature 99456..>100115
/locus_tag="SMa0180"
/note="hypothetical protein; Provisional; Region:
PRK10281"
/db_xref="CDD:170349"
gene complement(100505..100708)
/gene="cspA7"
/locus_tag="SMa0181"
/db_xref="GeneID:1235321"
CDS complement(100505..100708)
/gene="cspA7"
/locus_tag="SMa0181"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; start codon changed based on
similarity to other proteins"
/codon_start=1
/transl_table=11
/product="CspA5 cold shock protein transcriptional
regulator"
/protein_id="NP_435342.1"
/db_xref="GI:16262549"
/db_xref="GeneID:1235321"
/translation="MPKGTVKFFNDDKGFGFITPEDGGTDVFVHVSALQHGGSLKEGD
KVSYDVGQDRKTGKSKAENVSVL"
misc_feature complement(100511..100702)
/gene="cspA7"
/locus_tag="SMa0181"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein...;
Region: CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(100544..100546,100625..100627,
100658..100660,100685..100687))
/gene="cspA7"
/locus_tag="SMa0181"
/note="DNA binding site"
/db_xref="CDD:88424"
misc_feature complement(order(100619..100630,100649..100669))
/gene="cspA7"
/locus_tag="SMa0181"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 100964..102508
/locus_tag="SMa0185"
/db_xref="GeneID:1235322"
CDS 100964..102508
/locus_tag="SMa0185"
/function="Structural elements; Cell envelope"
/codon_start=1
/transl_table=11
/product="transmembrane-transport protein"
/protein_id="NP_435343.1"
/db_xref="GI:16262550"
/db_xref="GeneID:1235322"
/translation="MADNIHTPEQASRREWVGLCVLSIACLIYSMDLSVLFLAVPAIV
ADLDPSASQLLWINDIYGFMVAGFLVTMGTLGDRIGRRRVLLMGAFAFGVASAFAAFS
NTPGQLILARALLGIAGATIAPSTLSLIVNLFKNEAERNRAISIWGTAFALGGLVGPL
IGGILLQYFHWGSVFLINIPVMLLLLAVAPFLLPEYKNNDAGRLDLLSVVLSLATVLP
IIYGFKHMAADGFQLAQIVYIGLGLLVGLLFVRRQRRLSDPLVDLALFRVPAFTASLM
VNLAGVFFVFGVFLFQNLFLQLVLGLSPLEAALWSAPSALVFAVMSFQAYRFTNRFGP
VRTVLGGLLVNAAGAAAMAIAAYAESLIGILGSSMIIGFGFVPVVLTTTGLIVGTAPP
ERAGSASAISETSAEFGGALGIAVLGSLATLIYRMAMNRADLSSLNPVQAEAVSATLA
GAVETARSMPGSTSAVWLETAKSGFSLGFAICCVVATVTLLLLAIVARRVYATAHIDE
STLAPH"
misc_feature 101024..>101995
/locus_tag="SMa0185"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature 101024..>101500
/locus_tag="SMa0185"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(101060..101062,101069..101077,101081..101086,
101135..101137,101144..101149,101156..101158,
101168..101173,101177..101182,101318..101323,
101330..101335,101342..101347,101354..101356,
101393..101398,101405..101410,101426..101428)
/locus_tag="SMa0185"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 102649..103602
/locus_tag="SMa0187"
/db_xref="GeneID:1235323"
CDS 102649..103602
/locus_tag="SMa0187"
/note="glimmer prediction; has short chain domain; SDR
superfamily member"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="NP_435344.2"
/db_xref="GI:193782543"
/db_xref="GeneID:1235323"
/translation="MKSETGQKQRDIQKQVEGADKKEKPKTSGAMQAGARRYPEPPFP
KVHQDKPGSEADLPVAPMYDAPFYKGSDKLKDKVALITGGDSGIGRSVAVLFAREGAD
VAIVHLDESQDADDTKAAVEKEGRKCLVIKGDVKDASFCRKAVEKTVMQLGRLDILIN
NAAFQVHTRDIEDLTDEHFDETLKTNLYGYFYMAKAAIPHLKNGSAIINTGSVTGLTG
SKELLDYSMTKGGIHAFTRALSGHLVPKGIRVNAVAPGPVWTPLNPSDKEAEDVEKFG
SQTPMKRAAQPEEIAPAYVFLASPQMSSYITGEILPIVGGY"
misc_feature 102745..103599
/locus_tag="SMa0187"
/note="short chain dehydrogenase; Provisional; Region:
PRK06701"
/db_xref="CDD:168649"
misc_feature 102862..103599
/locus_tag="SMa0187"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene 104028..104471
/locus_tag="SMa0189"
/db_xref="GeneID:1235324"
CDS 104028..104471
/locus_tag="SMa0189"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435345.1"
/db_xref="GI:16262552"
/db_xref="GeneID:1235324"
/translation="MRTDLVNRPQDGSAGRSALLVASAVNAVAAIYHIIGGTPEVMYP
VYSANLPPSSAGVLDILWYQMAALIVGSAVATLVAAFRSDWRWPVAWIIGGHFLVVSG
ICLFFTFVWFGNPWGLIQWAIFGPVGLIIFWAAARPAERAGAPTL"
gene 104560..105189
/locus_tag="SMa0190"
/db_xref="GeneID:1235325"
CDS 104560..105189
/locus_tag="SMa0190"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; with bacterial regulatory
proteins, tetR domain"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="NP_435346.1"
/db_xref="GI:16262553"
/db_xref="GeneID:1235325"
/translation="MADKQGGPTKADWVAAGLSALTAGGIEAVRVERLAVILGVSKGP
FYWRFKNRGELLEAIIEFWKRDFTADLIEQTSHFDTPRERLEALAELAVVSTSGALDV
AKTECALRAWAAQDPLPRAAVREVDAMRTKHLTEEFKLLGAPHPLAEQLAKAIYLALL
GLYTVRQYTPELADEQSYLTAVRIALDAAQIQSHSTEASAAKSRLEPDI"
misc_feature 104560..105087
/locus_tag="SMa0190"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 104599..104736
/locus_tag="SMa0190"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:144144"
gene complement(105799..106329)
/locus_tag="SMa0191"
/db_xref="GeneID:1235326"
CDS complement(105799..106329)
/locus_tag="SMa0191"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435347.1"
/db_xref="GI:16262554"
/db_xref="GeneID:1235326"
/translation="MTADKISPDMLRFERILAAPAATVWQYLVDPELRARWFMSGPTD
LQVGGAFGLTMDHDRLSDEVVPTPDRYKPYVGHRWHERITRYEPPHLLAFTWEDGKAG
EVTFALTEIDSGTTRLVLTHTGLRGSEDALNFGGGWHAHLAVLEKRIAGISIPDFWAL
HAVAEREMEIALVSEA"
misc_feature complement(105880..106326)
/locus_tag="SMa0191"
/note="Polyketide cyclase / dehydrase and lipid transport;
Region: Polyketide_cyc2; cl10449"
/db_xref="CDD:175214"
gene complement(106326..106652)
/locus_tag="SMa0193"
/db_xref="GeneID:1235327"
CDS complement(106326..106652)
/locus_tag="SMa0193"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435348.2"
/db_xref="GI:193782544"
/db_xref="GeneID:1235327"
/translation="MVDEKLTLTFAALADPTRRGMLAALTSGEKPISELARPYQMTLA
GAAKHVAILARAGLIERRKVGRQNICRLNAGNLKEANDWLAQWQRFWNVRLDALEKAL
KEELSQ"
misc_feature complement(106428..106625)
/locus_tag="SMa0193"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(106482..106484,106572..106574,
106581..106586,106593..106598,106605..106607,
106614..106616,106620..106625))
/locus_tag="SMa0193"
/note="dimerization interface; other site"
/db_xref="CDD:28974"
misc_feature complement(order(106443..106451,106464..106472,
106488..106493,106497..106502,106509..106514,
106518..106529,106554..106562,106599..106607,
106617..106622))
/locus_tag="SMa0193"
/note="putative DNA binding site; other site"
/db_xref="CDD:28974"
misc_feature complement(order(106551..106553,106560..106562))
/locus_tag="SMa0193"
/note="putative Zn2+ binding site; other site"
/db_xref="CDD:28974"
gene complement(106949..107863)
/locus_tag="SMa0196"
/db_xref="GeneID:1235328"
CDS complement(106949..107863)
/locus_tag="SMa0196"
/EC_number="3.1.1.17"
/function="Macromolecule metabolism; Macromolecule
degradation; degradation of polysaccharides"
/codon_start=1
/transl_table=11
/product="gluconolactonase"
/protein_id="NP_435349.1"
/db_xref="GI:16262556"
/db_xref="GeneID:1235328"
/translation="MAEASIYEIHDPRFRQMIVTSAGLDELYSGCRWAEGPVWFNDAN
QLLWSDIPNQRILRWTPEGGVSVYRQPSNFTNGHTRDRRGRLISCEHGTRRVTRTEVD
GSITVLADRFEGRRLNSPNDVVVKSDGTIWFTDPTYGIMSDYEGYHADPEQPTRNVYR
LDPETGELSAVVTDFTQPNGLAFSPDEKILYVADSSASHDDRLPRHIRAFDLTDGGRL
ANGRVFCVIDKGIPDGIRTDANGNLWSSAGDGVHCFDTAGKLIGKIRVPQTVANLTFG
GPRRNRLFIAATRSLYSVYVAVTGSQVP"
misc_feature complement(106952..107842)
/locus_tag="SMa0196"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:33193"
misc_feature complement(107246..>107395)
/locus_tag="SMa0196"
/note="Arylesterase; Region: Arylesterase; pfam01731"
/db_xref="CDD:145076"
gene complement(107878..108825)
/locus_tag="SMa0197"
/db_xref="GeneID:1235329"
CDS complement(107878..108825)
/locus_tag="SMa0197"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partially similar to ABC
transporter integral membrane protein and E. coli ribose
transport protein rbsC"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435350.2"
/db_xref="GI:193782545"
/db_xref="GeneID:1235329"
/translation="MNALIRQFGKPWVWSWLAAFIVWFLTIMVTGGAGTLGLSQAALT
FAAFSVIVGIGQMFVITLGPGNIDLSVPATMTLAGTVALKLMNVENGMVLPGLLLAVF
IGLGVGLCNYTLIKALRIPPIIATLSMSFVVQSGAIWTNRGLRIKPPSVLAEFTTTNT
LGVPNVAIVAVLISVLAWILLEKTIYGRWISAIGQSMPAARMAGIPVDGTRFVTYLFC
AVLASISGYLLACFSGGAALNMGAEYLLMSIAVVVIGGTAVAGGDSNVPGIWGASLFM
FLVVSMLNTYGLGAGIRLIMTGLIIISVIMLAGGRRGMR"
misc_feature complement(107905..108690)
/locus_tag="SMa0197"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(108178..108234)
/locus_tag="SMa0197"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(108822..109769)
/locus_tag="SMa0198"
/db_xref="GeneID:1235330"
CDS complement(108822..109769)
/locus_tag="SMa0198"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partially similar to ribose ABC
transporter, permease protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435351.1"
/db_xref="GI:16262558"
/db_xref="GeneID:1235330"
/translation="MTFRLSSDAIRLVIPALSLSLLLAAVFWLQPRAMSYIGLNLLFN
LAVPIALATIAQMLVMAVNDLDLSMGAFVSFVACVTATFLRDAPAIGILILAGAVAAY
AAIGVVIHLRNLPSIVVTLGMSFVWGGLAVLLLPAPGGQAPDWVRWLMTVKPPLAPMA
IVASIIIAVIAHFIVKRSSLGVLIRGVGGNQRSVERAGWSIVAARATAYALAGLFAVL
AGIALVGLTTSADANIALRYTLLSIAGVILGGGEFTGGRVSPIGAVIGALTLTLASSF
LSFLRISPDWQIGAQGAILIIVLALRLMLNRLERREKRR"
misc_feature complement(108876..109634)
/locus_tag="SMa0198"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(109140..109196)
/locus_tag="SMa0198"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(109766..111229)
/locus_tag="SMa0199"
/db_xref="GeneID:1235331"
CDS complement(109766..111229)
/locus_tag="SMa0199"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435352.1"
/db_xref="GI:16262559"
/db_xref="GeneID:1235331"
/translation="MMASSMDDVAKAIIAVDGAKVSFGAVKALDGVTLRVMPGECVGL
VGHNGAGKSTIVSVINGGLTPHHGIVTSDGERQERYGINAARDRGVRCVFQELSLCPN
LSIVENTRLVHRTLGGFGWRLRAAKIIEKSLDAVFPGHGIDSGRTVGDLSIAERQMVE
IALAFSDAGTPARLVILDEPTSSLDASLARQMLDHVRRFIAAGGSVIFISHILHEILE
TADRIVVMKDGRVVAERPAHRFDHHGLVEAMGSVAKAETRQRPVCDQPAAPVILSHEA
AGIPFTARTGEIIGLAGLAGHGQTELLLALHAARSGNWLPQGNPLVTFVAGDRRLNGV
FELWSILRNFSIASLGDMSRRGLVLEAGEKTRGTAWKERIEIRTPDLNNRILSLSGGN
QQKVLFARALATRAPIVLMDDPMRGVDVGTKQEVYAIIREEAAAGRTFIWYSTEMDEV
CLCDRVYVFREGRITAELGGDAVDEANIISASFEGTA"
misc_feature complement(109775..111214)
/locus_tag="SMa0199"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature complement(110528..111190)
/locus_tag="SMa0199"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and...;
Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature complement(111071..111094)
/locus_tag="SMa0199"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(order(110597..110599,110693..110698,
110945..110947,111068..111076,111080..111085))
/locus_tag="SMa0199"
/note="ATP binding site; other site"
/db_xref="CDD:72975"
misc_feature complement(110945..110956)
/locus_tag="SMa0199"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature complement(order(110750..110764,110909..110923))
/locus_tag="SMa0199"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature complement(110693..110710)
/locus_tag="SMa0199"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature complement(110675..110686)
/locus_tag="SMa0199"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(110591..110611)
/locus_tag="SMa0199"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature complement(109838..110398)
/locus_tag="SMa0199"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene complement(111288..112304)
/locus_tag="SMa0203"
/db_xref="GeneID:1235332"
CDS complement(111288..112304)
/locus_tag="SMa0203"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; partial homology to ABC
transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435353.2"
/db_xref="GI:193782546"
/db_xref="GeneID:1235332"
/translation="MTIRKMLLASAAITCAAMPASAFADTSAKKIALSNNYAGNSWRQ
AMLTSWEKVTGEAVKAGIVASADAFTTAENQATEQAAQIQNMILQGYDAIVLNAASPT
ALNGAVKEACDAGITVVSFDGIVTEPCAWRIAVDFKEMGRSQVEYLSNKLPDGGNLLE
IRGLAGVFVDDEISAGIHEGVKQFPQFKIAGSVHGDWAQDVAQKAVAGILPSLPDIVG
VVTQGGDGYGAAQAIAATDRKMPIIVMGNREDELKWWKEQKDANGYETMSVSIAPGVS
TLAFWVAQQILDGKEVKKDLVVPFLRIDQDNLEANLANTQAGGVANVEYTQEDAIKVI
ESAK"
misc_feature complement(111351..112304)
/locus_tag="SMa0203"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature complement(111396..112217)
/locus_tag="SMa0203"
/note="Periplasmic sugar-binding component of
uncharacterized ABC-type transport systems that are
members of the pentose/hexose sugar-binding protein family
of the type I periplasmic binding protein superfamily;
Region: PBP1_ABC_sugar_binding_like_1; cd06300"
/db_xref="CDD:107295"
misc_feature complement(order(111495..111497,111564..111566,
111786..111788,111939..111941,112179..112181))
/locus_tag="SMa0203"
/note="putative ligand binding site; other site"
/db_xref="CDD:107295"
gene 112578..113825
/locus_tag="SMa0204"
/db_xref="GeneID:1235333"
CDS 112578..113825
/locus_tag="SMa0204"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="NP_435354.1"
/db_xref="GI:16262561"
/db_xref="GeneID:1235333"
/translation="MLHSAPAAMFDHYLGISRLLAGQLDFRSAIRSVAAEVAHIIPHD
HLDVCVLLEDGNYHTAYETGIETAWGDLAGAPVVNSPIRSLLWGEVDFLLADDAMTDP
RFHFDGAFKRPIVEQSLRSRLHVPMKVQGAIIAALSCSSQEAGAYTMEDVERARIIAD
LLTPYFFALRAAEQAQRSAIVEAEARAREEGLRLGALKLTEALEQERQRIGMDLHDQT
LADLTRLARRIDRLSRNGEVAPEALEPVSRSLQHCMQDLRQIIEQAKPSVLQLFGLTQ
AIEHHLDRSTRDTGSIIEWGLADETNGALERLEPTVIVALFRIAQEAINNAVRHAAPL
AVKVRLDADDDRLSIEISDDGTGLAKTRGRIGEGIDNMKTRARLISARFTIGPGHNNR
GTVVRVVLPLAPHDSGSIEERAE"
misc_feature 112623..113114
/locus_tag="SMa0204"
/note="GAF domain; Region: GAF; cl00853"
/db_xref="CDD:154040"
misc_feature 112803..113783
/locus_tag="SMa0204"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature 113508..113786
/locus_tag="SMa0204"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cl00075"
/db_xref="CDD:173995"
gene 113822..114544
/locus_tag="SMa0206"
/db_xref="GeneID:1235334"
CDS 113822..114544
/locus_tag="SMa0206"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="Response regulator"
/protein_id="NP_435355.1"
/db_xref="GI:16262562"
/db_xref="GeneID:1235334"
/translation="MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLAR
EHKSAHIVMDLQMASRNGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAA
YGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFNDSEYEILVDIA
LGLTDRAIARRRGLSLRSVQNRLQQLYDKLDVYQAASDDNDDGRFNLRARAITIAFLR
KLLNYSALERAEAELQEWLDGK"
misc_feature 113822..114490
/locus_tag="SMa0206"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 113831..114190
/locus_tag="SMa0206"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems...; Region: REC;
cd00156"
/db_xref="CDD:29071"
misc_feature order(113840..113845,113981..113983,114005..114007,
114065..114067,114134..114136,114143..114148)
/locus_tag="SMa0206"
/note="active site"
/db_xref="CDD:29071"
misc_feature 113981..113983
/locus_tag="SMa0206"
/note="phosphorylation site"
/db_xref="CDD:29071"
misc_feature order(113990..113995,113999..114007)
/locus_tag="SMa0206"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 114143..114151
/locus_tag="SMa0206"
/note="dimerization interface; other site"
/db_xref="CDD:29071"
misc_feature 114275..114397
/locus_tag="SMa0206"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors...;
Region: LuxR_C_like; cl10457"
/db_xref="CDD:142561"
gene 114669..115757
/locus_tag="SMa0209"
/db_xref="GeneID:1235335"
CDS 114669..115757
/locus_tag="SMa0209"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435356.1"
/db_xref="GI:16262563"
/db_xref="GeneID:1235335"
/translation="MLKSIDLMYQAMLAELRQRSLDAAWSADFPSDGRFTPLTVKQRR
YWYFDRPDGKGGRTRDYVGPASDPEIAKRVEEFKAQKDDLQARRRMVSTLTREGGMVA
PDRMSGDVIEALASGGLFRLRGILIGTIAFHTYAGVLSVRLPGHSIMTGDADVAQDFA
VSREVGDSMPPILQLLQSVDPTFRPVPHRSGQAAFSSFQNKNSYKVEFLTNRSSDDYM
DQPARMPALGGASADPLRFLDFLIRDPVRTVVLHKSGIPVTVPDPSRYAVHNLIVASR
RHNDGQSAVKRDKDIRQAGILFEAILQTRRSSDLALVYNEAWQRGDAWRAGIRAGAAM
LPDEGRKHLKACLRTGAVEIDEDVSLPF"
misc_feature 114669..115712
/locus_tag="SMa0209"
/note="Protein of unknown function (DUF3620); Region:
DUF3620; cl02233"
/db_xref="CDD:154811"
gene complement(115852..116118)
/locus_tag="SMa0210"
/db_xref="GeneID:1235336"
CDS complement(115852..116118)
/locus_tag="SMa0210"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435357.2"
/db_xref="GI:193782547"
/db_xref="GeneID:1235336"
/translation="MDVQKAGMARLLLAAPDVRDSAWMIHDLTFLKLCEVYEHACLRR
DVLRCAASIDDAALLKSEEECKSLEAAAIAYIRERQKFSGLGSH"
gene complement(116261..116455)
/locus_tag="SMa0211"
/db_xref="GeneID:1235337"
CDS complement(116261..116455)
/locus_tag="SMa0211"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435358.1"
/db_xref="GI:16262565"
/db_xref="GeneID:1235337"
/translation="MLGDWDMDDRDTNHNGEKNSASDLLEIAAQLAALAEDIKTLAAM
PIEQISTLIEPGDRPEASSE"
gene complement(116673..117515)
/gene="kduI"
/locus_tag="SMa0214"
/db_xref="GeneID:1235338"
CDS complement(116673..117515)
/gene="kduI"
/locus_tag="SMa0214"
/note="4-deoxy-L-threo-5-hexosulose-uronate
ketol-isomerase; catalyzes the interconversion of
4-deoxy-L-threo-5-hexosulose uronate to
3-deoxy-D-glycero-2,5-hexodiulosonate"
/codon_start=1
/transl_table=11
/product="5-keto-4-deoxyuronate isomerase"
/protein_id="NP_435359.2"
/db_xref="GI:193782548"
/db_xref="GeneID:1235338"
/translation="MTISVSVRQVVGPEDAARRNTQGLRDGFVIEALFQPGRANLTYS
HLDRMIVGGVVPAADRLVIDRVAETGTQRFLDRREAAIINIGGSGTVSVGDKDHVLGF
QEALYVGMGGGALGFASDDANAPALFYVLSAPAHRSCPTVHITRDMAKKLSLGSAEES
NARTINQYVHPDVCESCQLLVGLTMFEPGSVWNTMPAHVHDRRMEVYLYFGMQEATRI
FHFMGEPGETRHVVLKNHEAVLSPGWSIHSGAGTGRYAFIWAMAGDNMSFTDMDKVPM
EALR"
misc_feature complement(116676..117503)
/gene="kduI"
/locus_tag="SMa0214"
/note="KduI/IolB family; Region: KduI; cl01508"
/db_xref="CDD:174639"
gene complement(117547..118287)
/locus_tag="SMa0216"
/db_xref="GeneID:1235339"
CDS complement(117547..118287)
/locus_tag="SMa0216"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; similar to ABC sugar transport
ATP binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435360.1"
/db_xref="GI:16262567"
/db_xref="GeneID:1235339"
/translation="MMSTPNLLELHNISKSFGALTALRNLSFHIGEGEVVGLLGDNGA
GKSTTVNLISGIHKPTDGYLSVDGKKTTFSCRSDSADAGIETIYQHTALVDSLSITRN
IFMGRELTDRFGFLRQREMRDIAMEVLQNAVHISGIDSPDTLVGNLSGGQKQAVAIAR
AVYFKKRVLLLDEPTSALSVRETEALLNQVLKLKAENVSSVLVTHNLYHAYQVCDRFV
IMSHGTKVFDVQKADTTISQLTEYVVLT"
misc_feature complement(117604..118278)
/locus_tag="SMa0216"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature complement(117604..118266)
/locus_tag="SMa0216"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop NTPase; cl09099"
/db_xref="CDD:158411"
misc_feature complement(118147..118170)
/locus_tag="SMa0216"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(117673..117675,117769..117774,
118021..118023,118144..118152,118156..118161))
/locus_tag="SMa0216"
/note="ATP binding site; other site"
/db_xref="CDD:72971"
misc_feature complement(118021..118032)
/locus_tag="SMa0216"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(117817..117846)
/locus_tag="SMa0216"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(117769..117786)
/locus_tag="SMa0216"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(117751..117762)
/locus_tag="SMa0216"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(117667..117687)
/locus_tag="SMa0216"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(118284..119363)
/locus_tag="SMa0217"
/db_xref="GeneID:1235340"
CDS complement(118284..119363)
/locus_tag="SMa0217"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; start codon changed based on
homology and codon usage."
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435361.2"
/db_xref="GI:193782549"
/db_xref="GeneID:1235340"
/translation="MGARRRARPVPRSPTIECQTVTPVLAESAAPRSRTQRQSILKQI
MGMPAGAIFLVFMTLQIVCIAGALLYPDEFRYLSPQNLTILMKAIPVLGCLALGAGVL
MIAGEFDLSIGSVYTFTAVLMASLVNAGLSAFIAAPIAILTGLLIGSLNGHITLRFGL
PSFIVTLGGLLFWRGAVLLYNGAVQVRFDPEPVFTSLFSGTLFGVNAAFIWIVLFVTG
FHLLLHRHRFGNHVFATGGNRGAAEAIGINTSRVKLIAFAIAGGMAAVAGILATARVG
SVQPGQGAGLELQAIAACVIGGLSLRGGRGSIIGIFLGVLLIHTITDVLLLLRAPGFY
LDMFIATLIVLAAIFNHLIERRGLA"
misc_feature complement(118314..119057)
/locus_tag="SMa0217"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(118590..118646)
/locus_tag="SMa0217"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(119373..120323)
/locus_tag="SMa0218"
/db_xref="GeneID:1235341"
CDS complement(119373..120323)
/locus_tag="SMa0218"
/function="Cell processes; Transport of small molecules;
carbohydrates, organic acids, alcohols"
/note="glimmer prediction; start codon changed based on
homology and codon usage pattern"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435362.2"
/db_xref="GI:193782550"
/db_xref="GeneID:1235341"
/translation="MKLTRLRTAALAAGLATLLTSTALAADVKATMIIYLDPSVQFFN
PVVKGAQDAAAQFGVDLDVQYANNDPVRQNDLIESATASGVDGIAVAISSSDAFDESI
CAAVKAGIIVIGFNNDDLDGAKGNCRQAYVGMDELASGYELGNRMIKEFGLKSGDVVF
NPREIPEASFAVARGGGIEKAMTENGIKVETVRAGLDPAEAQNIIAQFLIANPNVKAL
FGTGSVTSTVGAGAIKDAGVDIPFGGFDLAVEIVNAVESGAMYATMDQQPYLQGYYPI
AQIALAKKYGLTPTDIDTGQGAFLDKTRIGSVKPLIGSYR"
misc_feature complement(119433..120230)
/locus_tag="SMa0218"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:175057"
gene complement(120444..121958)
/locus_tag="SMa0220"
/db_xref="GeneID:1235342"
CDS complement(120444..121958)
/locus_tag="SMa0220"
/function="Small molecule metabolism; Energy metabolism,
carbon"
/codon_start=1
/transl_table=11
/product="NAD-dependent aldehyde dehydrogenase"
/protein_id="NP_435363.1"
/db_xref="GI:16262570"
/db_xref="GeneID:1235342"
/translation="MLSNFIAPDSNDPRLRIKSRYQMLVDGKSVDAASGSTIDRVSPG
HAGEVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEE
LALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALEGQTHNNIGDDRLGLVLREPV
GVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGV
FNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGEIAARTVKRVGLELGGKGPQI
VFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFGDP
LNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTP
DMSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRIRAG
RCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEYSQFKGVHVTLGRPAPWFT"
misc_feature complement(120492..121898)
/locus_tag="SMa0220"
/note="delta-1-pyrroline-5-carboxylate dehydrogenase,
group 2, putative; Region: D1pyr5carbox2; TIGR01237"
/db_xref="CDD:130304"
misc_feature complement(120477..121841)
/locus_tag="SMa0220"
/note="Gluconobacter oxydans L-sorbosone
dehydrogenase-like; Region: ALDH_SNDH; cd07118"
/db_xref="CDD:143436"
misc_feature complement(order(120561..120563,120675..120677,
120753..120755,120759..120761,121053..121055,
121149..121157,121197..121202,121209..121211,
121218..121229,121371..121376,121380..121382,
121425..121427,121449..121463))
/locus_tag="SMa0220"
/note="NAD(P) binding site; other site"
/db_xref="CDD:143436"
misc_feature complement(order(121053..121055,121062..121064,
121155..121157,121449..121451))
/locus_tag="SMa0220"
/note="catalytic residues; other site"
/db_xref="CDD:143436"
gene 122050..122778
/locus_tag="SMa0222"
/db_xref="GeneID:1235343"
CDS 122050..122778
/locus_tag="SMa0222"
/function="Miscellaneous; Not classified regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="NP_435364.1"
/db_xref="GI:16262571"
/db_xref="GeneID:1235343"
/translation="MVVQIGCQRMTAAKDMNLESLKIDTGETAAAQVERDLRESIIRL
ELAPGMRLSEQEIATRMGVSRQPVREALIALGKSKLVDIRPNRGTVVVRISARQMMEA
RFVREAIEVAVARRASETFDSWTRRKIDTILARQKAANEAHDHNAFRREDEQFHIAIA
EGAGCGLAWNAVSDIKAHMDRVCNLQLRHPDSMKKLIAEHEAIITAIDARDADAAAAA
MRSHLNGILADLPQIEADNPDLFE"
misc_feature 122086..122775
/locus_tag="SMa0222"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 122131..122322
/locus_tag="SMa0222"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(122131..122133,122137..122139,122209..122214,
122236..122250,122254..122259,122266..122268,
122296..122301,122305..122316)
/locus_tag="SMa0222"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 122425..122724
/locus_tag="SMa0222"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene complement(122852..123637)
/locus_tag="SMa0223"
/db_xref="GeneID:1235344"
CDS complement(122852..123637)
/locus_tag="SMa0223"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; with tetR domain"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, TetR family"
/protein_id="NP_435365.2"
/db_xref="GI:193782551"
/db_xref="GeneID:1235344"
/translation="MRCDRRCGGVKYRSWAQILCERHAKACRFGRRREAGGWLRLKAS
SYILQVSYFWYIVMSSRPNKTQPPAKRVRLSREQRRRQLLDLAWHLVREEGSDALTLP
RLSQEAAVAKPVVYDHFGTRNGLLIALYRDFDARQTEMIDAALAGSGPTLEDRARVIA
TSYVDCVLAQGREMPGVLAALAGSPELEAVKRDYQLAFIEKCRRALAAFVGRRGIEPA
GFWAMLGAANALSDAASTGEITAEQAQDELFETIVAMIERSHP"
misc_feature complement(122864..123379)
/locus_tag="SMa0223"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(123251..123379)
/locus_tag="SMa0223"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:144144"
gene 123589..125061
/locus_tag="SMa0224"
/db_xref="GeneID:1235345"
CDS 123589..125061
/locus_tag="SMa0224"
/function="Structural elements; Cell envelope"
/codon_start=1
/transl_table=11
/product="Permease, MFS"
/protein_id="NP_435366.2"
/db_xref="GI:193782552"
/db_xref="GeneID:1235345"
/translation="MPMTDTSLPRTVDRTAWLGLIAILPLVLLVAMDGSILYLAMPHV
TSALMPTADQALWILDIYGFVVGSLLIAFGNIGDRYGRLKLIITGAAVFGAGSLGAAY
SQTPEQLIASRALMGLGGATLLPSGLAIVSALFPDPRLRAQAIGIFAATFAAGFAIGP
LIGGMLLRQFAWGAVFLINVPVVIGFMIGAPILLREVRSTVGGSIDLASLVLSFAGIL
LFTYSLKNAAAYGFTPTQIVAGAAGIFALALFARRQTKLEYPLLDLGLFRDRIFSIAI
LTGLLSLVVWSAAGYLSGVYLQSVLGIDVFAAALLTLPGAIVLTATCVATARIVERIG
RKTALVATHLLIGAGVFLLLFTTTETGIAVFIASTMIAGIGYGLSFSLVADIAVSAVP
ANRAGAAGSIAETSNELGNALGISLLGSLATLSFRLFGPGVAGTLDETLDQPGLAHQS
LIQAQEAFLTGMHVAIGTGGLLTLAVGMVAWLWLPSKLPE"
misc_feature 123682..124830
/locus_tag="SMa0224"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:148990"
misc_feature 123682..>124173
/locus_tag="SMa0224"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(123688..123690,123697..123705,123709..123714,
123763..123765,123772..123777,123784..123786,
123796..123801,123805..123810,123946..123951,
123958..123963,123970..123975,123982..123984,
124021..124026,124033..124038,124054..124056)
/locus_tag="SMa0224"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature <124378..124857
/locus_tag="SMa0224"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 125261..126253
/locus_tag="SMa0226"
/db_xref="GeneID:1235346"
CDS 125261..126253
/locus_tag="SMa0226"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435367.2"
/db_xref="GI:193782553"
/db_xref="GeneID:1235346"
/translation="MSVSFPRAGFLALVMVVALAFGVPFDAARGELLARVPAAREMAV
CGDTLFVGTKGSSVYAVSLPGGRARRVASGFSNANGVACSRGRLFVASRSSITAFEIG
RGGTLSGRRDIRRDLPNSGAHSFRYIALGPDARLYVSLGSPCNICVPGGLQGTIVSMN
QDGSDLRRVAWGVRNSVGFDWRGGRMFFTDNGADRMGDDVPPDELNALRPGGFYGFPY
FGGQVPLTGFEDAMPPARQIPPVFNFQAHVAALGIHFFRSLGGDALVAQHGSWNRSVP
VGYQVVRVRFRGGRPVSAATFLRNVGRPVDVKEAPDGAILVSDDAGGAIHIFRR"
misc_feature 125261..126247
/locus_tag="SMa0226"
/note="Glucose/sorbosone dehydrogenases [Carbohydrate
transport and metabolism]; Region: COG2133"
/db_xref="CDD:32316"
gene 126420..127766
/gene="gdhA"
/locus_tag="SMa0228"
/db_xref="GeneID:1235347"
CDS 126420..127766
/gene="gdhA"
/locus_tag="SMa0228"
/EC_number="1.4.1.4"
/function="Small molecule metabolism; Central intermediary
metabolism; amino acids"
/note="converts 2-oxoglutarate to glutamate; in
Escherichia coli this enzyme plays a role in glutamate
synthesis when the cell is under energy restriction; uses
NADPH; forms a homohexamer"
/codon_start=1
/transl_table=11
/product="glutamate dehydrogenase"
/protein_id="NP_435368.1"
/db_xref="GI:16262575"
/db_xref="GeneID:1235347"
/translation="MNVDEKLEPILAEVLRRNGGEHEFHQAVREVLESLGRVIAKHPR
YAENALIERICEPERQIIFRVPWVDDKGQVQINRGFRVQFNSALGPYKGGIRFHPSVN
IGIIKFLGFEQTFKNALTGMPIGGGKGGSDFNPRGRSDGEIMRFCQSLMTELHRHLGE
YTDVPAGDIGVGGREIGYMFGQYKRLTNRYEAGVLTGKALFYGGSRARKEATGYGATY
FVQRMIATKGLDFEGKRVTVSGSGNVAIYTMEKVIEFGGKIVACSDSNGYVVDEDGID
LELVKEIKEVRRERISEYARLKGAGTHYIEAGSVWDVPCDVAMPSATQNELTGKDART
LVKNGVLAVGEGANMPCTPEAVRIFQEAGVLFAPGKAANAGGVATSALEMQQNASRDS
WTFEQTEARLATIMQAIHDRCAETAEEYGTPGDYVLGANIAGFVRVAEAMDALGVI"
misc_feature 126429..127763
/gene="gdhA"
/locus_tag="SMa0228"
/note="glutamate dehydrogenase; Provisional; Region:
PRK09414"
/db_xref="CDD:169848"
misc_feature 126588..126980
/gene="gdhA"
/locus_tag="SMa0228"
/note="Glu/Leu/Phe/Val dehydrogenase, dimerization domain;
Region: ELFV_dehydrog_N; pfam02812"
/db_xref="CDD:145786"
misc_feature 127005..127760
/gene="gdhA"
/locus_tag="SMa0228"
/note="NAD(P) binding domain of glutamate dehydrogenase,
subgroup 2; Region: NAD_bind_2_Glu_DH; cd05313"
/db_xref="CDD:133455"
misc_feature order(127143..127151,127209..127214,127383..127388,
127455..127463)
/gene="gdhA"
/locus_tag="SMa0228"
/note="NAD(P) binding site; other site"
/db_xref="CDD:133455"
gene 128085..128507
/locus_tag="SMa0229"
/db_xref="GeneID:1235348"
CDS 128085..128507
/locus_tag="SMa0229"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435369.1"
/db_xref="GI:16262576"
/db_xref="GeneID:1235348"
/translation="MSSIMVSSNLPLPFIGATDYRLLSRLAYQALSRDFDIAAELIEK
LERPCVLPDDQVPPDVVKIGSIVTCEVEDGPCRTFSLVYPDDVDAEKGRISVLTPVGV
ALLGLRPGQAVEWFSRDGQRNHLIVVRVEDDVKDELAL"
misc_feature 128085..128480
/locus_tag="SMa0229"
/note="Uncharacterized conserved protein, YhbC family
[Function unknown]; Region: COG0782"
/db_xref="CDD:31125"
misc_feature 128271..128477
/locus_tag="SMa0229"
/note="C-term; Region: GreA_GreB; pfam01272"
/db_xref="CDD:144753"
gene 128727..129278
/locus_tag="SMa0232"
/db_xref="GeneID:1235349"
CDS 128727..129278
/locus_tag="SMa0232"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435370.2"
/db_xref="GI:193782554"
/db_xref="GeneID:1235349"
/translation="MTRRKLERCAMSREAFCQLTAGDLNILMSMLDETGHTESFTILL
REKLNYASVFFREDIPENVVTLDTQVGYTVNGVRTGPHLLVRNAAGRPANSAISVRTM
RGLALLGLAVGERTEILGEDGWPETLAVERIVFQPESEARLKQTSTEPVQLIDHAPQV
VNFRPRPRKAAIPHDDDPGPSAA"
misc_feature 128727..129134
/locus_tag="SMa0232"
/note="Uncharacterized conserved protein, YhbC family
[Function unknown]; Region: COG0782"
/db_xref="CDD:31125"
gene complement(129300..130691)
/gene="otsA"
/locus_tag="SMa0233"
/db_xref="GeneID:1235350"
CDS complement(129300..130691)
/gene="otsA"
/locus_tag="SMa0233"
/EC_number="2.4.1.15"
/note="glimmer prediction; Very similar to
trehalose-6-phosphate synthase (OtsA) of Rhizobium sp.
NGR234 sym plasmid. S. meliloti appears to lack OtsB"
/codon_start=1
/transl_table=11
/product="OtsA trehalose-6-phosphate synthase"
/protein_id="NP_435371.1"
/db_xref="GI:16262578"
/db_xref="GeneID:1235350"
/translation="MSRLVIVSNRVPVPDKGGIAPAGGLAVALKVALEEHGGIWMGWS
GRSSGENEPEPLAQLHQGNITYALTDLTDTDVGEYYHGFANRVLWPICHYRLDLAEYG
RKEMAGYFRVNRFFAHRLAPLVRPDDVIWVHDYHLIPLAAELRQMGLKNRIGFFLHIP
WPPADVLFTMPVHEEIMRGLSHYDVVGFQTDHDLENFAGCLRREGIGDELGGGRFSAY
GRVFKGGIYAIGIETAAFAEFAKKALTNKTVRKARESIEHRSLIIGVDRLDYSKGITQ
RIDAFERFILANPAQQGRVTYLQITPKSRSEVPEYEAMQRTVAEQAGRVNGALGAVDW
VPIRYINRSVGRHILAGLYRLGKVGLVTPLRDGMNLVAKEYVAAQDPDDPGVLVLSRF
AGAARDLKGALLVNPYDIEGTANAMARALSMPLEERKDRWKTMMDHLLEHDVSRWCRD
FLNDLATSPDPSG"
misc_feature complement(129324..130685)
/gene="otsA"
/locus_tag="SMa0233"
/note="Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a key
enzyme in the trehalose synthesis pathway. Trehalose
is...; Region: GT1_TPS; cd03788"
/db_xref="CDD:99963"
misc_feature complement(129324..130685)
/gene="otsA"
/locus_tag="SMa0233"
/note="alpha,alpha-trehalose-phosphate synthase
[UDP-forming]; Region: trehalose_OtsA; TIGR02400"
/db_xref="CDD:162840"
misc_feature complement(order(129570..129572,129579..129584,
129645..129647,129876..129878,129891..129893,
130218..130220,130284..130286,130290..130292,
130452..130454,130608..130613,130662..130664))
/gene="otsA"
/locus_tag="SMa0233"
/note="active site"
/db_xref="CDD:99963"
misc_feature complement(129888..129914)
/gene="otsA"
/locus_tag="SMa0233"
/note="homotetramer interface; other site"
/db_xref="CDD:99963"
gene complement(131106..132884)
/locus_tag="SMa0235"
/db_xref="GeneID:1235351"
CDS complement(131106..132884)
/locus_tag="SMa0235"
/EC_number="4.2.1.9"
/function="Small molecule metabolism"
/note="catalyzes the formation of 3-methyl-2-oxobutanoate
from 2,3,-dihydroxy-3-methylbutanoate"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="NP_435372.1"
/db_xref="GI:16262579"
/db_xref="GeneID:1235351"
/translation="MTDKPQRRLRSQDWFDNPDHIDLTALYLERFMNYGVTPEELRCG
KPIIGIAQSGSDLTPCNRVHMDLAKRVRDGIRDAGGIPIEFPTHPIFENCKRPTAALD
RNLAYLGLVEILYGYPLDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGWHE
GDLVGSGTVIWRMRRKLAAGEIDREEFMQAALDSAPSVGHCNTMGTASTMNAMAEALG
MSLTGCGAIPAAYRERGQMAYRTGRRAVELVFEDLKPSDILTREAFLNAIRVNSAIGG
STNAQPHLAAMAKHAGVELYPDDWQVHGFDIPLLANIQPAGAYLGERYHRAGGTPAIM
WELLKAGKLDGGCRTVTGRTVAENLEGREPTDREVIRPFDEPLKEKAGFLVLKGNLFD
FAIMKMSVVSDDFRKRYLQEPGREGVFEGKAVVFDGSEDYHKRINDPELDIDENTILV
IRGAGPLGWPGSAEVVNMQPPDHLLKRGIRSLPTIGDGRQSGTADSPSILNASPESAA
GGGLAWLRSGDVIRIDFNLGRCDMLVSDEDIERRKADGIPAVPADATPWQRIYRKSVT
QLSDGAVLEGAADFRQIAKNMPRHNH"
misc_feature complement(131109..132884)
/locus_tag="SMa0235"
/note="Dehydratase family; Region: ILVD_EDD; cl00340"
/db_xref="CDD:174127"
misc_feature complement(131163..132782)
/locus_tag="SMa0235"
/note="dihydroxy-acid dehydratase; Region: ilvD;
TIGR00110"
/db_xref="CDD:161713"
gene complement(132893..133774)
/locus_tag="SMa0237"
/db_xref="GeneID:1235352"
CDS complement(132893..133774)
/locus_tag="SMa0237"
/function="Small molecule metabolism; Central intermediary
metabolism; amino acids"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435373.1"
/db_xref="GI:16262580"
/db_xref="GeneID:1235352"
/translation="MSGKTKIAFLGTGLMGAPMARRLLGAGFSVTVWNRDAAKAEPLA
ADGADIAASPADAVAGAAIVFTMLTNGQAVSEVLFERGVADSLAEGRIVVDCSSIAPQ
IAREHARRLAEKGIRHLDAPVSGGVVGAAAGTLAIMAGGDGAAVESLKEVFAVLGRVT
HVGPSGAGQVCKLANQQIVAVTIGAVAEAMVLVEAGGASRAAFRDAIRGGFAESRILE
LHGARMVERNFAPGGASNNQLKDLNAVMAMADELSLELPLTRQVRQEFADFVESGGGE
QDHSGLLLQLEKLNPRN"
misc_feature complement(132914..133762)
/locus_tag="SMa0237"
/note="3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism];
Region: MmsB; COG2084"
/db_xref="CDD:32267"
misc_feature complement(<133259..133759)
/locus_tag="SMa0237"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene complement(133771..134754)
/locus_tag="SMa0241"
/db_xref="GeneID:1235353"
CDS complement(133771..134754)
/locus_tag="SMa0241"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to SMB0663 of S.
meliloti pSymb"
/codon_start=1
/transl_table=11
/product="epimerase"
/protein_id="NP_435374.1"
/db_xref="GI:16262581"
/db_xref="GeneID:1235353"
/translation="MHILIIGAAGMVGRKLTQRLVKDGTLGANSVEKLTLVDVVAPER
PQGFAGTVVAREGDLSASGEAEKLVEGRPDVIFHLAAIVSGEAELDFDKGYRINLDGT
RYLFDAIRLAHDQDGYKPRLVFTSSIAVVGAPLPFPIPDDYHLTPLTSYGTQKAICEL
LLSDYSRRGFFDGIGIRLPTICIRPGKPNKAASGFFSNILREPLVGQEAVLPVSEDVR
HWHTSPRSAVGFLIHGATINLEKVGPRRNLSMPGLSATVGEQIEALRRVAGEKAVQLI
RREPDEMIMKMVAGWAPGFEAKRATELGFTAEKSFDEIIRVHIEDELGGKL"
misc_feature complement(133786..134754)
/locus_tag="SMa0241"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature complement(<134197..>134601)
/locus_tag="SMa0241"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene 134949..136394
/locus_tag="SMa0244"
/db_xref="GeneID:1235354"
CDS 134949..136394
/locus_tag="SMa0244"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; C-terminus similar to actin
interacting protein, a eukaryotic mitochondrial protein
with lactate activity; also has similarity to glycolate
oxidases"
/codon_start=1
/transl_table=11
/product="Dehydrogenase, FAD-dependent"
/protein_id="NP_435375.1"
/db_xref="GI:16262582"
/db_xref="GeneID:1235354"
/translation="MTSAGTIEDAKGPAELRLALRQMLGEDIVLSETEEMLRFCRDWH
GDVTTGTVAVIRPRSTQQVAAAVKACRELGLSIVPQGGNTGLVLGAIPDAPERQVVLS
LSRMNRIRKIDPADFSAVVESGCILSELKDAIAKMGMFFPLALGAQGSCQIGGNVSTN
AGGVNVLRYGMTRELVLGLEVVLPDGSILEGLSTLRKDNRGIDLKQLFIGAEGTLGII
TAVSITLTPYPDHVATALLGLASLEDAIRLYRRARRDCCDLMSAFEFMPPLAFTLAQE
AMPDLPIPISAEYPAYVLMEISGSGLVDVDDLMQRFLEGAMEEGLVLDGTIAASQTQA
RNLWLIREGMNEGQAKRGTHMRTDISVPLSQLASFVEEAEKAVSEALPGAVSVSYGHV
GDGNVHLNVLPPAGSTPEERIQLIYKAKTVVNEVLDRYTGSISAEHGIGRLKRPDFDA
RLPATRRKLLTALKHAVDPEMIMNPGCQLRF"
misc_feature 135003..136388
/locus_tag="SMa0244"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:30625"
misc_feature 135105..135518
/locus_tag="SMa0244"
/note="FAD binding domain; Region: FAD_binding_4; cl10516"
/db_xref="CDD:158898"
gene 136409..137119
/locus_tag="SMa0246"
/db_xref="GeneID:1235355"
CDS 136409..137119
/locus_tag="SMa0246"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; C-terminus similar to bacterial
regulatory proteins, gntR family"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, GntR family"
/protein_id="NP_435376.2"
/db_xref="GI:193782555"
/db_xref="GeneID:1235355"
/translation="MAAMDFGQISRSEHLPARIAAKIGREITEGRIAPGEKLPTEHLL
ATTFGVSRSVVREAIAQLRNEGLVETRQGVGAFATEIERRQSLRIEQGDLANRGSFRD
LFQLRIPLEVEAARLAAIHHTPQDLGKIDEALQQMTGAEKWTEQGIVADLAFHRAIAA
ATHNEYFLLFIGFIAERISLAINAARAAAILEEIVEVTIAEHVSIRNGVSARDPVQAE
EAMRHHLNGAAARLDLTI"
misc_feature 136430..137104
/locus_tag="SMa0246"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 136451..136639
/locus_tag="SMa0246"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(136454..136456,136523..136525,136529..136534,
136556..136570,136574..136579,136586..136588,
136616..136621,136625..136636)
/locus_tag="SMa0246"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 136712..137089
/locus_tag="SMa0246"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene 137290..138486
/locus_tag="SMa0247"
/db_xref="GeneID:1235356"
CDS 137290..138486
/locus_tag="SMa0247"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435377.1"
/db_xref="GI:16262584"
/db_xref="GeneID:1235356"
/translation="MSGGFLVSFEQALSAESIQPADASSAMLVGRVWSKTAGGPCPVL
ISEGEVFDLTPLAATISALLEIDGLVDALRDPSRFASLGSLDAFLRGEAGDLLAPADL
QAVKAAGVTFADSMLERVIEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSDKAAEV
KKLLQELGLWSQYLEVGIGPDAEIFTKAQPMSSVGCGAYIGIHPKSDWNNPEPEVVLA
VTSKGKIVGATLGNDVNLRDFEGRSALLLSKAKDNNASCSIGPFIRLFDGAFTIEDVK
QAEVSLVVDGKEGFKMTGISPMSAISRSPEDLVSQLLNDNHQYPDGVVFFLGTMFAPV
KDRRGTGLGFTHEIGDRVEISTPRLGRLVNWVDHSDRCPKWSFGLGALMKNLAERGLL
QAKREG"
misc_feature 137326..138465
/locus_tag="SMa0247"
/note="Fumarylacetoacetate (FAA) hydrolase family protein
[General function prediction only]; Region: COG3970"
/db_xref="CDD:33751"
misc_feature 137827..138381
/locus_tag="SMa0247"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; cl11421"
/db_xref="CDD:175247"
gene 138487..139020
/locus_tag="SMa0249"
/db_xref="GeneID:1235357"
CDS 138487..139020
/locus_tag="SMa0249"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="TRAP-type small permease component"
/protein_id="NP_435378.1"
/db_xref="GI:16262585"
/db_xref="GeneID:1235357"
/translation="MQKAIDTFYKLLELLLIVLLAGMAVMVFLNVVLRYGFNSGINVS
DEMSRYFFVWLTFIGAVVTFRENSHVGVETLVSLFGRKGRIICMILSNIVVIAVSAIF
FWGTWKQSPINASMAAPVTGISMLWVYGIGYFTGAGVVLIALERLVRLLTGRVTEEEI
AAFAGENMTLEQLAERT"
misc_feature 138487..139005
/locus_tag="SMa0249"
/note="Tripartite ATP-independent periplasmic
transporters, DctQ component; Region: DctQ; cl01181"
/db_xref="CDD:174571"
gene 139020..140297
/locus_tag="SMa0250"
/db_xref="GeneID:1235358"
CDS 139020..140297
/locus_tag="SMa0250"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; C-terminus with DedA domain"
/codon_start=1
/transl_table=11
/product="dedA-like protein"
/protein_id="NP_435379.1"
/db_xref="GI:16262586"
/db_xref="GeneID:1235358"
/translation="MTLVVFIVSLLGAMAIGVPVAFSLMFCGVVLMWYMGMFNTQIIA
QNMIAGADTFTLLAIPFFILAGELMNAGGLSRRIIDFAIACVGHIRGGLGIVAIMAAV
IMASISGSAAADTAALAAILIPMMAKAGYNVPRSAGLIAAGGVIAPVIPPSMAFIVFG
VAANVSITQLFMAGIVPGLIMGIALVATWLLVVRKDDIQPLPRTPMKERVGATGRALW
ALGMPVIILGGIKAGVVTPTEAAVVAAVYALFVGMVIYRELKPRDLPGVILQAAKTTA
VIMFLVCAALVSSWLITAANIPSEITGFISPLIDRPTLLMFVIMLVVLVVGTALDLTP
TILILTPVLMPIIKQAGIDPVYFGVLFIMNTCIGLLTPPVGVVLNVVSGVGRVPLGKV
IVGVTPFLVAQILVLFLLVLFPDIVIVPARWLH"
misc_feature 139038..140267
/locus_tag="SMa0250"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature 139158..140291
/locus_tag="SMa0250"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl09110"
/db_xref="CDD:175004"
gene 140349..141353
/locus_tag="SMa0252"
/db_xref="GeneID:1235359"
CDS 140349..141353
/locus_tag="SMa0252"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="glimmer prediction; with partial homology to
hypothetical protein"
/codon_start=1
/transl_table=11
/product="TRAP-type periplasmic solute-binding protein"
/protein_id="NP_435380.1"
/db_xref="GI:16262587"
/db_xref="GeneID:1235359"
/translation="MRKLLLATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGN
GIKAMQACLDQKSGGKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPA
LGVFDLPFLFANAQEAYTVLDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVT
KWEDFEGMKVRVMQNNIFLDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDT
SKFFEVQKYVTETNHAYTPFLFLFSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDL
NKKSLEKIKEAGLEVNTLSAEEQARIREKSMVVYEKHKAEIGAEVVDAILAKLEEIRK"
misc_feature 140349..141341
/locus_tag="SMa0252"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; cl00710"
/db_xref="CDD:153950"
gene 141517..142197
/locus_tag="SMa0254"
/db_xref="GeneID:1235360"
CDS 141517..142197
/locus_tag="SMa0254"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435381.1"
/db_xref="GI:16262588"
/db_xref="GeneID:1235360"
/translation="METSLYLPVKGFLEKAGYVVKGEVDGCDLVGLSDDDPPVVVICE
LKLRFNLELILQAVDRAAVADEVWIAARVSAKGKGREADKRYRDLCRRLGVGMLGISD
AGDVSVIVGSVTPMPRTNPKRRSKLMREHRRRRGDPAIGGSTRAPVMTAYRQQALGCA
LALTSGPLRVREIRSSVPDAGKILLANVYGWFERLDRGVYGLTAAGREALQRWPQQDM
QAKTAVPA"
misc_feature 141520..142194
/locus_tag="SMa0254"
/note="Uncharacterized conserved protein (DUF2161);
Region: DUF2161; cl02298"
/db_xref="CDD:154846"
gene 142327..143304
/locus_tag="SMa0255"
/db_xref="GeneID:1235361"
CDS 142327..143304
/locus_tag="SMa0255"
/function="Miscellaneous; Hypothetical/Partial homology"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="NP_435382.1"
/db_xref="GI:16262589"
/db_xref="GeneID:1235361"
/translation="MTSQLDMFARDVRPAAARAEASRARRQTSTSFSETEMLAALKAT
GRYRILRKLEARTVASEVRPGFPLRGVILDTETTGLDARKCEIIEIGLVSFTYNEEGE
IGDVVAVYGGLQQPTIAIPPDITRLTGITDAMVAGQSIDIAAVQAIVGPADLIIAHNA
GFDRPFCEAFSDVFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDGHRAVDDC
FALLGVLEQSSGGAALPPFAELYKASQRSRVRIFAENAPFDLKDVLKARGYRWSDGSD
GRPKSWWIEVAEEELEAELGFLRKEIYRWDEADPPTQRLTAFDRYRARR"
misc_feature 142423..143301
/locus_tag="SMa0255"
/note="DNA polymerase III subunit epsilon; Validated;
Region: PRK09182"
/db_xref="CDD:169695"
misc_feature 142435..>142605
/locus_tag="SMa0255"
/note="The DnaQ-like exonuclease superfamily is a
structurally conserved group of 3'-5' exonucleases, which
catalyze the excision of nucleoside monophosphates at the
DNA or RNA termini in the 3'-5' direction. It is also
called the DEDD superfamily, after the...; Region:
DnaQ_like_exo; cl10012"
/db_xref="CDD:175058"
misc_feature 142537..143004
/locus_tag="SMa0255"
/note="DEDDh exonucleases, part of the DnaQ-like (or DEDD)
exonuclease superfamily, catalyze the excision of
nucleoside monophosphates at the DNA or RNA termini in the
3'-5' direction. These proteins contain four invariant
acidic residues in three conserved...; Region: DEDDh;
cd06127"
/db_xref="CDD:99831"
misc_feature order(142546..142557,142561..142563,142798..142803,
142807..142815,142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="active site"
/db_xref="CDD:99831"
misc_feature order(142546..142557,142561..142563,142798..142803,
142807..142812,142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="substrate binding site; other site"
/db_xref="CDD:99831"
misc_feature order(142546..142548,142552..142554,142813..142815,
142960..142962,142975..142977)
/locus_tag="SMa0255"
/note="catalytic site; other site"
/db_xref="CDD:99831"
gene complement(143473..145566)
/locus_tag="SMa0257"
/db_xref="GeneID:1235362"
CDS complement(143473..145566)
/locus_tag="SMa0257"
/note="glimmer prediction; NADH:flavin oxidoreductase/NADH
oxidase family PF00724; homologous to DhtM (accession
#P16099) from Methylophilus methylotrophus"
/codon_start=1
/transl_table=11
/product="methylamine"
/protein_id="NP_435383.1"
/db_xref="GI:16262590"
/db_xref="GeneID:1235362"
/translation="MSRDSRFDILFEPVKIGPVTARNRFYQVPHCSGMGYRYPNAEAH
LRGMKAEGGWAVVSTQEAEIHPTSDLTPANEARLWDDGDLPALSAVTERVHAHGSLAA
IQLVHNGLHVANRFSRMIPLAPSHAVSDSLDPVQARAMDKADITDMRRWYRNAALRAK
KAGFDIVYLYAGHDMSVLQHFLSRRHNDRSDEYGGSFENRLRLFREILDDVREAIGDT
CALAVRLAVDELMGPSGITCEGEGKDIISALGELPDLWDVNLSDWSNDSQTARFSEEG
YQEPYIRFVKSVTTKPVVGVGRYTSPDSMVRVVKQGILDFIGAARPSIADPFLPKKIE
EGRIDDIRECIGCNICTSGDNTNVPMRCTQNPTVGEEWRKGWHPETIARSEAPEPALI
IGGGPAGLEAARALAQRGVDVMLAEGGGEWGGRVARECRLPGLATWGRVRDWRIGQLS
TRVNAELYLHSPLSAADILQYGIPHVAIATGASWRTDGVGRTHRMALDFLSEGILVSP
DAILSEGAEAVPSDGPVVVFDDDCFYMGSVLAELLARRGRTVTFVTPESQVSPWSRNT
LEQARIQKRLIGLGVEIVTAMALAGRTKDQLELSCVYSGRSRPVDCATLVPVTARLPD
ETLWLELKAREAEWADAGIKTITRLGDCLAPGLIAAAVYSGHQYARTYQEQVDKDRVP
FMREDIARLYGLRSG"
misc_feature complement(144454..145560)
/locus_tag="SMa0257"
/note="Trimethylamine dehydrogenase (TMADH) and histamine
dehydrogenase (HD) FMN-binding domain. TMADH is an
iron-sulfur flavoprotein that catalyzes the oxidative
demethylation of trimethylamine to form dimethylamine and
formaldehyde. The protein forms a...; Region:
TMADH_HD_FMN; cd02929"
/db_xref="CDD:73377"
misc_feature complement(144508..145551)
/locus_tag="SMa0257"
/note="NADH:flavin oxidoreductases, Old Yellow Enzyme
family [Energy production and conversion]; Region: NemA;
COG1902"
/db_xref="CDD:32086"
misc_feature complement(order(144514..144516,144601..144609,
144673..144675,144679..144681,144895..144897,
145048..145050,145057..145059,145255..145257,
145384..145389,145474..145485))
/locus_tag="SMa0257"
/note="FMN binding site; other site"
/db_xref="CDD:73377"
misc_feature complement(order(144475..144477,144481..144486,
144493..144495,144505..144510,144517..144519,
144526..144528,144535..144537,144604..144609,
144895..144897,145042..145044,145048..145053,
145057..145062,145255..145257,145297..145299,
145357..145362,145384..145386,145465..145467,
145474..145476,145480..145482))
/locus_tag="SMa0257"
/note="active site"
/db_xref="CDD:73377"
misc_feature complement(order(144454..144459,144499..144501,
144508..144510,145012..145017,145153..145155,
145201..145203,145300..145302,145309..145314,
145318..145320,145327..145332,145336..145338,
145423..145425))
/locus_tag="SMa0257"
/note="homodimer interface; other site"
/db_xref="CDD:73377"
misc_feature complement(145042..145044)
/locus_tag="SMa0257"
/note="putative catalytic residue; other site"
/db_xref="CDD:73377"
misc_feature complement(order(144481..144483,144517..144519,
144526..144528,144535..144537))
/locus_tag="SMa0257"
/note="4Fe-4S cluster binding site; other site"
/db_xref="CDD:73377"
misc_feature complement(<144061..>144459)
/locus_tag="SMa0257"
/note="putative selenate reductase subunit YgfK;
Provisional; Region: PRK09853"
/db_xref="CDD:170129"
misc_feature complement(<144295..144393)
/locus_tag="SMa0257"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene complement(145822..146667)
/locus_tag="SMa0259"
/db_xref="GeneID:1235363"
CDS complement(145822..146667)
/locus_tag="SMa0259"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435384.1"
/db_xref="GI:16262591"
/db_xref="GeneID:1235363"
/translation="MTAQDLYRIRDFVPDFDTIAAEFAERSWAVSARADVRADIRYGS
GVREVIDLILPERVQAGAPLHVFVHGGYWRSGEKINYRFVAAPVLAAGGIAALVEYDL
MPGKRLDVLVDQVRRSVLWLQAHAGDFGADPARLTVSGHSAGAHLASFLAATGPEEAY
PPSLPTLQGLLLLSGIYDLSGIPDSFLRHEAEMTPMEAAAWSPLTSSQLPCPLRIIAY
GADETAPFQNQAAGLCELLRAQDKSAELLPVPDLNHMSIVLDLADTDGVLGRQLHDLV
AQPTR"
misc_feature complement(145906..146661)
/locus_tag="SMa0259"
/note="Esterase/lipase [Lipid metabolism]; Region: Aes;
COG0657"
/db_xref="CDD:31002"
misc_feature complement(<146215..>146487)
/locus_tag="SMa0259"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:175390"
gene complement(146683..148146)
/gene="gabD3"
/locus_tag="SMa0260"
/db_xref="GeneID:1235364"
CDS complement(146683..148146)
/gene="gabD3"
/locus_tag="SMa0260"
/EC_number="1.2.1.16"
/function="Small molecule metabolism; Central intermediary
metabolism; pool of unassigned individual reversible
reactions"
/note="glimmer prediction; similar to E. coli GabD
(accession P25526) and A. tumefaciens AttK (accession
AAD43988); Aldehyde family, PF00171"
/codon_start=1
/transl_table=11
/product="GabD3 succinate-semialdehyde dehdyrogenase"
/protein_id="NP_435385.1"
/db_xref="GI:16262592"
/db_xref="GeneID:1235364"
/translation="MTFHAKFSGYADPALHAAGLYIGGKWQSGSGITVLDPSTGNLLA
EVADASIEDAQRAVDAADAAAAGWRATPARQRSEILRRWYQLMTQHAEELATLIALEN
GKALADARGEVAYAAEFFRWYAEEATRIPGEFRHTPSGSHNILVDHEPIGIAVLITPW
NFPAAMATRKIGPALAAGCTVILKPASETPLTAYAMARLGEEAGVPPGVVNVLTTSNP
GGITNAMLADPRVRKLSFTGSTGVGRVLLAEAAKSVVSCSMELGGNAPFIVFDDADLE
VALDGAMIAKMRNAGEACTAANRFYVQAGIHDAFVAGLTARMKSLKLGPGYDPETQCG
PMITQNAVRKIDRLVSEALAAGARATTGGKPLTENGYFYPPTVLENVPVNASIAREEI
FGPVAPVYKFESDDEAIRLANNTEYGLAAYIYSRDLKRAMKVGKRIETGMLGINRGLM
SDPAAPFGGVKQSGLGREGGVTGILEFMEPKYFAVDY"
misc_feature complement(146704..148089)
/gene="gabD3"
/locus_tag="SMa0260"
/note="1-pyrroline-5-carboxylate dehydrogenase;
Provisional; Region: PRK03137"
/db_xref="CDD:167499"
misc_feature complement(146692..148047)
/gene="gabD3"
/locus_tag="SMa0260"
/note="Mitochondrial succinate-semialdehyde dehydrogenase
and ALDH family members 5A1 and 5F1-like; Region:
ALDH_F5_SSADH_GabD; cd07103"
/db_xref="CDD:143421"
misc_feature complement(order(146692..146712,146746..146748,
146761..146763,146779..146784,146791..146793,
146809..146829,146833..146835,146842..146844,
146848..146850,146860..146865,146869..146871,
147073..147075,147211..147213,147223..147225,
147394..147396,147403..147405,147415..147417,
147451..147453,147700..147702,147715..147723,
147739..147765,147769..147774,147781..147783,
147904..147906,147931..147933))
/gene="gabD3"
/locus_tag="SMa0260"
/note="tetramerization interface; other site"
/db_xref="CDD:143421"
misc_feature complement(order(146776..146778,146890..146892,
146968..146970,146974..146976,147265..147267,
147361..147369,147409..147414,147421..147423,
147430..147441,147586..147591,147595..147597,
147640..147642,147664..147678))
/gene="gabD3"
/locus_tag="SMa0260"
/note="NAD(P) binding site; other site"
/db_xref="CDD:143421"
misc_feature complement(order(147265..147267,147274..147276,
147367..147369,147664..147666))
/gene="gabD3"
/locus_tag="SMa0260"
/note="catalytic residues; other site"
/db_xref="CDD:143421"
gene complement(148163..149362)
/locus_tag="SMa0263"
/db_xref="GeneID:1235365"
CDS complement(148163..149362)
/locus_tag="SMa0263"
/EC_number="1.1.1.-"
/note="glimmer prediction; similar to Agrobacterium
tumefaciens AttL (accession AAD43989); iron-containing
alcohol family, PF00465"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="NP_435386.1"
/db_xref="GI:16262593"
/db_xref="GeneID:1235365"
/translation="MNLFGTLRAPRELLFGAGQRHALGGIAAKLGHRALIVTDTRLAV
DADLLALVRRLEEAGLEVMVDSSTLPDVPVESAIVSAAAASGFAPDLVIGIGGGSCLD
MAKCVTLLLTHGGRPQDYYGEYAVPGPVMPLIAIPTTAGTGSEVTPVAVLSDAERSLK
VGISSPHLIPAVSICDPELTLSCPPGLTAIAGADALTHAIEAFTAIRREPVPGIAQQR
VFVGKNELSDHFALSAITLLWQGLERACKDGADAGARETVMLGATLAGLAFGVAGTAA
AHAIQYPVGALTHTAHGLGVACLMPYVMTWNAPLIRDELAQIAHAAGLGGPDEVIPAL
VSLFERIGIPATLRDLGLEEDRIDWVAEQSSGIARLIQNNPRPLNPHEMRNLVAAAHC
GDRSRLN"
misc_feature complement(148190..149353)
/locus_tag="SMa0263"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:31643"
misc_feature complement(148202..149335)
/locus_tag="SMa0263"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); Region:
DHQ_Fe-ADH; cl02872"
/db_xref="CDD:174735"
misc_feature complement(order(148487..148489,148517..148519,
148529..148531,148769..148771,148781..148783,
148802..148804,148826..148828,148880..148885,
148940..148942,148946..148951,149048..149050,
149057..149059,149066..149074,149246..149248))
/locus_tag="SMa0263"
/note="active site"
/db_xref="CDD:173927"
misc_feature complement(order(148487..148489,148826..148828,
148940..148942,148946..148951,149066..149074,
149246..149248))
/locus_tag="SMa0263"
/note="NAD binding site; other site"
/db_xref="CDD:173927"
misc_feature complement(order(148487..148489,148529..148531,
148781..148783))
/locus_tag="SMa0263"
/note="metal-binding site"
/db_xref="CDD:173927"
gene complement(149384..150388)
/locus_tag="SMa0265"
/db_xref="GeneID:1235366"
CDS complement(149384..150388)
/locus_tag="SMa0265"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="NP_435387.1"
/db_xref="GI:16262594"
/db_xref="GeneID:1235366"
/translation="MRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSH
GLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILK
ETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVA
IGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAI
APFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGS
IPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEAA"
misc_feature complement(149396..150388)
/locus_tag="SMa0265"
/note="Malate/L-lactate dehydrogenase; Region: Ldh_2;
cl00900"
/db_xref="CDD:174446"
gene 150483..151175
/locus_tag="SMa0267"
/db_xref="GeneID:1235367"
CDS 150483..151175
/locus_tag="SMa0267"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; putative bacterial regulatory
protein, gntR family, PF00392"
/codon_start=1
/transl_table=11
/product="GntR family regulator"
/protein_id="NP_435388.1"
/db_xref="GI:16262595"
/db_xref="GeneID:1235367"
/translation="MVVAIAAERASRGAGIRPTSVVEGVYDSIYHRLMSLDIAPGARI
PIDVLARELGVSQTPIREALSRLEREGLVRKEHLIGYSAAPQWTRKQFEDLYAFRLLI
EPEAARLAAANMTPEALQQLENSAADMGHGEAPVDRNTRYSRFARADAQFHDEILKIA
GNDVIRSTLSNQHVHLHIFRLMFHIRVTQEALEEHESLLAAFRARDPQAAYDAMRVHI
ERSRDRLLSAFE"
misc_feature 150528..151172
/locus_tag="SMa0267"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 150540..150725
/locus_tag="SMa0267"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(150540..150542,150546..150548,150615..150617,
150618..150623,150645..150659,150663..150668,
150675..150677,150705..150710,150714..150725)
/locus_tag="SMa0267"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 150762..151142
/locus_tag="SMa0267"
/note="FCD domain; Region: FCD; cl11656"
/db_xref="CDD:159608"
gene 151172..152764
/locus_tag="SMa0270"
/db_xref="GeneID:1235368"
CDS 151172..152764
/locus_tag="SMa0270"
/note="glimmer prediction; ABC transporter family,
PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="NP_435389.1"
/db_xref="GI:16262596"
/db_xref="GeneID:1235368"
/translation="MNAALPSNAVAPPPNRAVAALAAEGLGKAYGPITVLSDVTLEVH
AGEVHAIIGENGAGKSTLMKLLSGHVVPTAGHLLLEGKSVEFRNAVEAENAGIVLVHQ
EILLASDLTVAENLYLGREVGRGLLVNDKAMNSRAAELLARVGSAARPRDRVGELPLA
QRQLVQIARALLDERKVIIFDEPTAVLANDEVAALLDIVRSLRDHGVAVLYISHRLDE
VQALADRITVLRDGRMIGTWPAAGLGQREMAELMVGRELDMLYPHKRSATTAAPILSV
TNLAIDHGSQTVSFSVSPGEVLGIGGMVGAGRTELIEGLMGLRPSEAESIVLNGREIG
SRSVRTLMDAGLVYLTEDRKGKGLLLEEKLGPNLTLQALDTINPGVFLDKQGELSRLR
KAVADYDIRVRSMRLEASQLSGGNQQKLLLAKVMMADPSVIIIDEPTRGIDIGNKSQI
YDFIDGMVRAGKACIVISSEMPELVGLADRVLVMRAGRIVAELRGDEINEENVVYAAT
TGGCADVGEEKHDRSDSNTRTN"
misc_feature 151241..152701
/locus_tag="SMa0270"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 151241..151882
/locus_tag="SMa0270"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and...;
Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 151328..151351
/locus_tag="SMa0270"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(151337..151342,151346..151354,151475..151477,
151712..151717,151811..151813)
/locus_tag="SMa0270"
/note="ATP binding site; other site"
/db_xref="CDD:72975"
misc_feature 151466..151477
/locus_tag="SMa0270"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(151499..151510,151652..151669)
/locus_tag="SMa0270"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 151700..151717
/locus_tag="SMa0270"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 151724..151735
/locus_tag="SMa0270"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 151799..151819
/locus_tag="SMa0270"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 151979..152638
/locus_tag="SMa0270"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 152730..153725
/locus_tag="SMa0271"
/db_xref="GeneID:1235369"
CDS 152730..153725
/locus_tag="SMa0271"
/note="glimmer prediction; ABC-2 type transporter,
PF01061"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435390.1"
/db_xref="GI:16262597"
/db_xref="GeneID:1235369"
/translation="MTVATATLAPTNEGARIRWADLAPFIALAVIVLFGALVNPNFVS
SANLINVITRSAFIAIIAVGATFVISSGGLDLSVGSMMAFVTGIMIMAMNHLAPAFGA
WAIPMGAGVALLVGALCGLFNGLIVTVGRIEPFIVTLGTMGIFRAFITFMTDGGSLPI
DRSLREAYRPVYFGSFFGIPYPVLITFVVVMAGAFLLYKTKYGRRLKSAGSNVEVARF
SGVNVAGVRTGAYVIQGFCVAVAAICYVPRLGAATPTTGQLWELQVITAVVIGGTLLR
GGRGRIGGTVAGALILEVIANVMVLSDLVSEYLVAAVQGAIIIIAMLAHRFTANR"
misc_feature 152892..153653
/locus_tag="SMa0271"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 153369..153425
/locus_tag="SMa0271"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 153755..154720
/locus_tag="SMa0273"
/db_xref="GeneID:1235370"
CDS 153755..154720
/locus_tag="SMa0273"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435391.1"
/db_xref="GI:16262598"
/db_xref="GeneID:1235370"
/translation="MKSIIRKAGLLLSTATLVLAQPLGTAQAQEKRIVAVSIPAATHG
WTGGVVYHAEQAEKEVEAAFPNVDVVLSTASSATAQVSALEDLSATRKLDALVILPFT
SEELTGPVEQIKKNGTFISVVDRGLTDPTIQDLYVAGDNIAVGANTARWLSDKLGGQG
EIVVLRGIPTVIDDERIKGFSDVIDKTNIKILDIQYANWNQDEAFKLMQDYLAKYPKI
DAVWANDDDMLLGVIEAVDRAGRKDIKYALGGNGMKQVIEMVKEGNERTPVSTPYPPS
MIKSAIYMTAAQFAGQAPMRGSFLLGAPLITPENADQFYFPDSPF"
misc_feature 153755..154717
/locus_tag="SMa0273"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature 153851..154672
/locus_tag="SMa0273"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_3; cd06311"
/db_xref="CDD:107306"
misc_feature order(153887..153889,154124..154126,154280..154282,
154505..154507,154568..154570)
/locus_tag="SMa0273"
/note="putative ligand binding site; other site"
/db_xref="CDD:107306"
gene 154841..155428
/locus_tag="SMa0275"
/db_xref="GeneID:1235371"
CDS 154841..155428
/locus_tag="SMa0275"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; ThiJ/PfpI family, PF01965"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435392.1"
/db_xref="GI:16262599"
/db_xref="GeneID:1235371"
/translation="MSGKKILMLTGEFTEEYEIYVFQKGMEAVGHTVHVVCPDKKAGD
RIKTSLHDFEGDQTYTEKLGHYADINKTFSEVRPEEYDAVYAAGGRGPEYIRTDKRVQ
DMVRHFHDTGKPIFTICHGVQILMAVPGVLKGRKVAGLGACEPEVTAVGGTYIDVEPT
GAYVDGNMVSAKGWTGLAAFMRECLNVLGTKITHT"
misc_feature 154853..155404
/locus_tag="SMa0275"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in a subgroup of proteins similar to PfpI
from Pyrococcus furiosus; Region: GATase1_PfpI_1; cd03169"
/db_xref="CDD:153243"
misc_feature 155195..155197
/locus_tag="SMa0275"
/note="conserved cys residue; other site"
/db_xref="CDD:153243"
gene complement(155598..155948)
/locus_tag="SMa0277"
/db_xref="GeneID:1235372"
CDS complement(155598..155948)
/locus_tag="SMa0277"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435393.1"
/db_xref="GI:16262600"
/db_xref="GeneID:1235372"
/translation="MEKHRIYSVSVASVYPHYVAKAEKKGRTKAEVDEIICWLTGYGP
QALDDQLAKNTSLENFFAQAPRMNPSRSLITGVICGVRVEEIQDTTMREIRYLDKLID
ELAKGKAMDKILRK"
misc_feature complement(155604..155936)
/locus_tag="SMa0277"
/note="Uncharacterized protein conserved in bacteria
(DUF2200); Region: DUF2200; cl02047"
/db_xref="CDD:154722"
gene complement(156190..156489)
/locus_tag="SMa5016"
/db_xref="GeneID:6435254"
CDS complement(156190..156489)
/locus_tag="SMa5016"
/note="Has similarity to a short region in the carboxy-
termini of proteins annotated as aldehyde dehydrogenases;
Possible ORF fragment"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000332.1"
/db_xref="GI:193782556"
/db_xref="GeneID:6435254"
/translation="MVGFNGAKMSGYGAKGGLAHLATYLYTKSATFNARSHDFRSSGP
GGTQDFRSGYDDLHRPLASLARPGGIPSGTGVVGRARPDSRSIRLDRIIDLDDMQ"
gene complement(156800..157411)
/locus_tag="SMa0279"
/db_xref="GeneID:1235374"
CDS complement(156800..157411)
/locus_tag="SMa0279"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; weak homologies to
phosphatidylethanolamine N-methyltransferase (accession
Q05197) from Rhodobacter sphaeroides"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435395.1"
/db_xref="GI:16262602"
/db_xref="GeneID:1235374"
/translation="MGIYRDVILPRLCDLSMRNERLRPYRERVIGAAQGRVLEIGVGS
GLNLPFYGPVVGEVLALEPSAGLVAMAREAPRSDLPVSFIDASAEAIPLDDKSVDTVV
TTWTLCTIPDAAAALTEMRRVLRPGGKLLFVEHGLAPDRGVRWWQDTLTPVWRRISGG
CHLNRPIRSMIECGGFRMERVETGYMQGPKPMTFMYEGSARPE"
misc_feature complement(157013..157306)
/locus_tag="SMa0279"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy)...; Region:
AdoMet_MTases; cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(157100..157102,157148..157156,
157223..157228,157274..157294))
/locus_tag="SMa0279"
/note="S-adenosylmethionine binding site; other site"
/db_xref="CDD:100107"
gene complement(157557..158345)
/locus_tag="SMa0280"
/db_xref="GeneID:1235375"
CDS complement(157557..158345)
/locus_tag="SMa0280"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435396.1"
/db_xref="GI:16262603"
/db_xref="GeneID:1235375"
/translation="MLDRTIPHNLARKAVLYRMVMPGHTCPYGLKTKDLLQRSGYEVD
DHHLTTREETDAFKAQHGVPTTPQVFIDGQRVGGYDDLRRFLGKPVADPKATTYRPVI
VLFTLTALTAMAASHAVNGTPFTLRAAEWFIAFSMVVLAMMKLQNVESFATMFLNYDL
LAMRWIPYSYIYPYAEGLAGVLMVAGALNWLSVPVAMFIGTVGAVSVFKAVYIDKREL
KCACVGGSSNVPLGFISLTENLMMIAMAVWMAAGSIGLIATHAM"
misc_feature complement(158082..158273)
/locus_tag="SMa0280"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:174165"
misc_feature complement(<157590..157979)
/locus_tag="SMa0280"
/note="Methylamine utilisation protein MauE; Region: MauE;
pfam07291"
/db_xref="CDD:115916"
gene 158400..158804
/locus_tag="SMa0281"
/db_xref="GeneID:1235376"
CDS 158400..158804
/locus_tag="SMa0281"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory protein,
merR family, PF00376; homologous to MerR from Thiobacillus
ferrooxidans (accession S18590)"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="NP_435397.1"
/db_xref="GI:16262604"
/db_xref="GeneID:1235376"
/translation="MVQSQDLQELTIGKLAAAGGVGVETIRFYQRKGLLATPKRLEGV
RRYGGEDVRRLRFIKQAQAAGFTLEEIGQLLALDAGHNRSAARELAKKKLEQLDARIG
ELNRAREALRKLVSECAEDKTGPCPILASFGV"
misc_feature 158427..158795
/locus_tag="SMa0281"
/note="Helix-Turn-Helix DNA binding domain of the MerR1
transcription regulator; Region: HTH_MerR1; cd04783"
/db_xref="CDD:133410"
misc_feature 158430..158792
/locus_tag="SMa0281"
/note="Hg(II)-responsive transcriptional regulator;
Region: MerR; TIGR02051"
/db_xref="CDD:131106"
misc_feature order(158430..158438,158478..158480,158526..158534)
/locus_tag="SMa0281"
/note="DNA binding residues"
/db_xref="CDD:133410"
misc_feature order(158568..158570,158577..158579,158589..158594,
158619..158621,158646..158651,158658..158660,
158667..158669,158679..158681,158697..158699,
158709..158711,158718..158723,158742..158744,
158757..158762,158775..158777,158781..158783)
/locus_tag="SMa0281"
/note="dimer interface; other site"
/db_xref="CDD:133410"
misc_feature order(158646..158648,158751..158753,158775..158777)
/locus_tag="SMa0281"
/note="mercury binding site; other site"
/db_xref="CDD:133410"
gene complement(159165..159389)
/locus_tag="SMa0285"
/db_xref="GeneID:1235377"
CDS complement(159165..159389)
/locus_tag="SMa0285"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435398.2"
/db_xref="GI:193782557"
/db_xref="GeneID:1235377"
/translation="MSASAQLAKMAIEKGHGETSHIVWMKMGGLKDWELKPNILEGDW
TFVTKNSVDFQGPNTSPAPRDNIPKRCSSR"
gene complement(159590..160051)
/locus_tag="SMa0286"
/db_xref="GeneID:1235378"
CDS complement(159590..160051)
/locus_tag="SMa0286"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; ORF also predicted in the
Rhizobium sp. NGR234 sym plasmid sequence - gene y4E0
(accession P55438)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435399.1"
/db_xref="GI:16262606"
/db_xref="GeneID:1235378"
/translation="MSLFCGSGGRRRAVIHLFSRDLAQGKVPAGHTSCQTPSFRSTMA
ATSWRGPVHSSPSILRARAASRPRSDCLPSAPQGPTGNSAHTPLGGPVARGLDGSHEF
LAIDLVPVMRDASERLDLAAAREIVTASPDVLGGTPVIRGTPVPVYDVAAS"
misc_feature complement(<159596..159673)
/locus_tag="SMa0286"
/note="Protein of unknown function (DUF433); Region:
DUF433; cl01030"
/db_xref="CDD:154156"
gene complement(160062..160508)
/locus_tag="SMa0287"
/db_xref="GeneID:1235379"
CDS complement(160062..160508)
/locus_tag="SMa0287"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435400.1"
/db_xref="GI:16262607"
/db_xref="GeneID:1235379"
/translation="MNKGSTKAKRQENSRCENEEPTRKPGTSIAEWIVAGVSCLALLA
VLGYLILDGLSGRNGAADIIVLPAEVTAMNDGYVVEFAANNRAGKSVAAVEIKGELRG
GEEVVEESGVTIDYIPQKSERKGALIFRSDPEGYELRIFASGYSEP"
misc_feature complement(160065..160427)
/locus_tag="SMa0287"
/note="Protein of unknown function (DUF2393); Region:
DUF2393; cl09840"
/db_xref="CDD:158727"
gene complement(160505..161341)
/locus_tag="SMa0288"
/db_xref="GeneID:1235380"
CDS complement(160505..161341)
/locus_tag="SMa0288"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435401.1"
/db_xref="GI:16262608"
/db_xref="GeneID:1235380"
/translation="MTPAEGVVGPTPREFWIGLGRAFAGALIFAVPVLMTMEAWALGF
HLHPLRLALLLVATVPTLVLLHKYGGFRKSVGLRDRIADAFVALLVAAIAASAILFSF
GIVDADMPLREIVGKVAVQIVPGSLGASLARAQLGPSPLEGDAVPEPAYAGELFLMVV
GALFLSVNIAPTEEVVLIAYKMNPWHEIALALGTLGLMHVFVYELEFRGTHNPEPGAG
FVNIFFRYTIVGYCLVMLVNFYILWTFGRTDGVGFSETLSAVVVLSFPGALGAAVARL
IL"
misc_feature complement(160508..161305)
/locus_tag="SMa0288"
/note="Putative integral membrane protein (DUF2391);
Region: DUF2391; cl01935"
/db_xref="CDD:154661"
gene 161616..161984
/locus_tag="SMa0291"
/db_xref="GeneID:1235381"
CDS 161616..161984
/locus_tag="SMa0291"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435402.1"
/db_xref="GI:16262609"
/db_xref="GeneID:1235381"
/translation="MVLFCSDPHISPETNPENAVSEFISYLFAILVVGPLQAEISERL
RGVPSTEIVQAGRACVAAEAPRLLQRAQEDWGWAAANAVGVSVGLIDPASLLAGQNAD
CDRLVQVLSQSSGGNGDDEA"
gene complement(162273..162668)
/locus_tag="SMa0293"
/db_xref="GeneID:1235383"
CDS complement(162273..162668)
/locus_tag="SMa0293"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435404.4"
/db_xref="GI:193782558"
/db_xref="GeneID:1235383"
/translation="MESVTILLAEDETLLLLDFEDALKEAGFMVLAVTSGKKAVEHLK
AAESSIAGIVTDIRFAESPSGWDVTRIAREIDPEMPVVYISGDSAPDWASQGVPKSIM
IEKPFVMSQMIVAISQLLNDRRAGAAALE"
misc_feature complement(162309..162590)
/locus_tag="SMa0293"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems...; Region: REC;
cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(162351..162356,162414..162416,
162474..162476,162501..162503))
/locus_tag="SMa0293"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(162501..162503)
/locus_tag="SMa0293"
/note="phosphorylation site"
/db_xref="CDD:29071"
misc_feature complement(order(162474..162479,162483..162485,
162489..162494))
/locus_tag="SMa0293"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(162348..162356)
/locus_tag="SMa0293"
/note="dimerization interface; other site"
/db_xref="CDD:29071"
gene complement(163041..164855)
/locus_tag="SMa0298"
/db_xref="GeneID:1235384"
CDS complement(163041..164855)
/locus_tag="SMa0298"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; N-terminal half of putative ORF
is similar to ABC transporter family, PF00005; start codon
changed based on homology and location of S-D consensus."
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435405.1"
/db_xref="GI:16262612"
/db_xref="GeneID:1235384"
/translation="MKNLIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESG
CGKSTVAYRLLGYGTINSLVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTS
LSPGMRVGSQICEMIATHKALPDGMTMERRIVELFTLVGLPDVGHRYPHELSGGQQQR
VTIAMAVACNPDLLVLDEPTTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQ
IADRVGVMYAGQLVEVAPCDKLLSAPAHPYSRGLIASIPTNDGTDRQARSLRGMLRRD
EMSTGCKFEPRCDFATGACRATPQLLELIEDARSVACMRWREATAPLAPSVTAKAVAR
TAVRSESLLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSG
KSTIARAISARLPPRAGIIRLDGTALAPSLKDRSVEELRQIQYIFQNPDASLNPRGLR
LFERTQELDDPCLYRNVERREDLVADQKLRIDEKCAGCYSKPPLDSKRTITSHARPPF
RGRRPYRASAVPSPAAVRARSAIHAPKTGHPSRSRLPASSAAISLPKHWYATPPRQIT
TARRSRSDQCRDLARDRAQASRRSALRRSAADRTANSC"
misc_feature complement(163908..164846)
/locus_tag="SMa0298"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature complement(164151..164846)
/locus_tag="SMa0298"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(164712..164735)
/locus_tag="SMa0298"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(164223..164225,164322..164327,
164565..164567,164709..164717,164721..164726))
/locus_tag="SMa0298"
/note="ATP binding site; other site"
/db_xref="CDD:73016"
misc_feature complement(164565..164576)
/locus_tag="SMa0298"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(164370..164399)
/locus_tag="SMa0298"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(164322..164339)
/locus_tag="SMa0298"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(164304..164315)
/locus_tag="SMa0298"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(164217..164237)
/locus_tag="SMa0298"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(163971..164162)
/locus_tag="SMa0298"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:157624"
misc_feature complement(<163515..163769)
/locus_tag="SMa0298"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop NTPase; cl09099"
/db_xref="CDD:158411"
misc_feature complement(163674..163697)
/locus_tag="SMa0298"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(163542..163544,163671..163679,
163683..163688))
/locus_tag="SMa0298"
/note="ATP binding site; other site"
/db_xref="CDD:72971"
misc_feature complement(163542..163553)
/locus_tag="SMa0298"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
gene complement(164858..165745)
/locus_tag="SMa0299"
/db_xref="GeneID:1235385"
CDS complement(164858..165745)
/locus_tag="SMa0299"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435406.1"
/db_xref="GI:16262613"
/db_xref="GeneID:1235385"
/translation="MSVITTIPARRFSRFNAERWRATPGPFKVGAVILVAHALFAILG
VFWTPYGFAEMGAGLPLSGASWQHPMGLDQIGRDVFSRFMHGAHIVLMLSFAGTMLGM
VAGTTLGLLSGYIGGWFDEVTQRIVEAMISIPFLALALVMIIAAGPALAGKPVLIVFV
VGLVYAPRIVRIARAAAMDIATREYVAVAELRGEGTWSIVFREILPNAANVLLVEFSL
RLSYAPILIGALGFLGFGIRPPTPEWGLMISENRNLLIASPVTVFGPGLGLASLVIGF
NLFTDGLSRMLGQRPVAGA"
misc_feature complement(164876..165736)
/locus_tag="SMa0299"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:174197"
gene complement(165742..166695)
/locus_tag="SMa0300"
/db_xref="GeneID:1235386"
CDS complement(165742..166695)
/locus_tag="SMa0300"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; similar to genes in
Agrobacterium tumefaciens (ophB, S77573; accD, BAA87748;
agaB, AAB88467) that are present on the Ti plasmid"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435407.1"
/db_xref="GI:16262614"
/db_xref="GeneID:1235386"
/translation="MSVLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRD
ATAKALELLRSQLDLDQPALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLL
LSLFAFAIYLVLALVPAIIQATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVA
VPILPALATISEASTWQETLRAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLA
ELKGLRPTAVLFRHALPNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDAL
QLRDIPLIKATVMISAVVYVAANLVADVLAVLLQPRLRTSR"
misc_feature complement(165826..>166209)
/locus_tag="SMa0300"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(165919..165936,166192..166209))
/locus_tag="SMa0300"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165829..165834,165838..165843,
165850..165855,165883..165888,165913..165918,
165925..165936,165955..165957,165964..165969,
166009..166011,166060..166062,166069..166074,
166084..166086,166090..166095,166102..166104,
166108..166110,166114..166119,166192..166194,
166198..166203))
/locus_tag="SMa0300"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165853..165855,165883..165885,
165892..165894,165916..165918,166132..166134,
166192..166194))
/locus_tag="SMa0300"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(165988..165990,166000..166005,
166021..166059))
/locus_tag="SMa0300"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(166692..167360)
/locus_tag="SMa0301"
/db_xref="GeneID:1235387"
CDS complement(166692..167360)
/locus_tag="SMa0301"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435408.1"
/db_xref="GI:16262615"
/db_xref="GeneID:1235387"
/translation="MTVFALTTFLNSFADALDRDARTVSRSHAARLRRLADQLPPMND
VPQGRVPIQAACEAELAAHDQSAIARALATLLPFVHITRSKSYLANPPSSDFGENYGY
GVICGPSSGPPALIKDPDIALGLMFLGPKTHYPLHHHPADELYYTVTGPSFWRAGEAD
WTRRGIDEIIHHPPWLPHATLSAEGPLVLLYIWEGDLETDAAFIPDTVTADAALSSMG
LDAT"
gene complement(167430..168956)
/locus_tag="SMa0302"
/db_xref="GeneID:1235388"
CDS complement(167430..168956)
/locus_tag="SMa0302"
/note="glimmer prediction; bacterial extracellular
solute-binding protein, family 5, PF00496; similar to S.
meliloti ORF23 (CAB01955)"
/codon_start=1
/transl_table=11
/product="ABC transporter periplasmic substrate-binding
protein"
/protein_id="NP_435409.1"
/db_xref="GI:16262616"
/db_xref="GeneID:1235388"
/translation="MKRHLLKGTALAVTMAACSFGATVAFAQEGCVRVLGYESDGEKQ
TMDPAALIGTDSVYHIRAVYEPLVDRSNTMQPVPALAESWESNADATEWTFHLRKGVK
FHDGSDFDAKDVVYSYRRLLDPAVSPGGFSTLAFLDADGITAIDDHTVRFKVKEPVVE
LPMLIATKYALMVPEGAKSEDLRVKGNGTGPFMQETFTINGAVRVMRRNPTYWRAGLP
KSECLEITTSLEPTSRLSALLSGTVDLSLTVDPASLITLKDNPAVELAATPGATSLYI
AVWTDTPPFDSVKVREAMKLVMDRQKILDTVLLGYGEVGADTPIPPSSPFGLGTPAKT
ADIEKATALLAEAGHPDGIDFDLYTSDSYPGMMLLAQVYAQMAAPAGIRVNVITSPAE
GYWDTIWLKKPAVISYTSARPPAEALTLSLNSKSEWNETHWTRDDFDALVVKAGQTAD
EKQRNDLYRDAQRIVADEGGMILPVFSSVVAGLRKGCSGYEPNVDVNRIDYAELTCAD"
misc_feature complement(167487..168878)
/locus_tag="SMa0302"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_17; cd08503"
/db_xref="CDD:173868"
misc_feature complement(167667..168734)
/locus_tag="SMa0302"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:144185"
gene 169064..169942
/locus_tag="SMa0303"
/db_xref="GeneID:1235389"
CDS 169064..169942
/locus_tag="SMa0303"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435410.1"
/db_xref="GI:16262617"
/db_xref="GeneID:1235389"
/translation="MVRRNLPPLTTLRAFEAAARLMSFKAAAEELRVTQSAVSHQVAS
LERNLGTPLFVRLPGRVELSQEGTVYFPVVQDALDKIALTTDLIRKTNTSASLTVQVY
VTVAVRWLIPRLQAFKEASPEIAVNLDASLLDWEFNPDRADVGFIYTRAPNRPNLTYT
LLRRERLVGVCSPAIARAIKTAEDLRHFSFLSVSGTTDDAETWAASVGVAGLSQKSSP
LFDSNLLAIEAAANGQGVVVVPQFLVEGDIANGNLVAPLASDVMQPGGWYLVHLQRRG
NEKAIRKFLQWIQSQT"
misc_feature 169073..169936
/locus_tag="SMa0303"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:170976"
misc_feature 169088..169264
/locus_tag="SMa0303"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature 169352..169927
/locus_tag="SMa0303"
/note="HvR and beta-lactamase regulators, and that of
other closely related homologs; contains the type 2
periplasmic binding fold; Region:
PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432"
/db_xref="CDD:176123"
misc_feature order(169352..169372,169376..169429,169433..169453)
/locus_tag="SMa0303"
/note="dimerization interface; other site"
/db_xref="CDD:176123"
misc_feature order(169367..169372,169376..169378,169724..169732,
169790..169792)
/locus_tag="SMa0303"
/note="substrate binding pocket; other site"
/db_xref="CDD:176123"
gene complement(170035..171675)
/locus_tag="SMa0306"
/db_xref="GeneID:1235390"
CDS complement(170035..171675)
/locus_tag="SMa0306"
/EC_number="4.3.1.3"
/function="Small molecule metabolism; Amino acid
biosynthesis; histidine"
/note="glimmer prediction; phenylalanine and histidine
ammonia-lyase family, PF00221"
/codon_start=1
/transl_table=11
/product="histidine ammonia-lyase"
/protein_id="NP_435411.1"
/db_xref="GI:16262618"
/db_xref="GeneID:1235390"
/translation="MRIDSLFHSVVGACLLFSSPVMADVLLNGRNATPEMIVRVAKGE
AVTVDGESLDKVERAYAVLLQGAKEGQEIYGLTVGVGWNKDRKMVDATGELTPELMEA
SREFNEGLLRAHSVGVGPDAAVPVVRAAMAVRLNNILTGGPGVQPHVAEMLLAFLNKG
ITPTMPSRGSVGQADMTLLSHIGLAMLGEGDVDYQGRRMSAAEALKAAGIEPLKPFGK
DGLAILSSNAYAAGLAALAIHDAEQLLSTSRLVYALSLEGLNGNVSPLLEDVAALRPF
PSHLSSTTELRALLEGSYLWQADDKRILQDPLSFRTAPYLLGSFADSLARTKALVQIQ
INSSDDNPGIVVGVEPKSDLFQARRGYVEGGAVLPTANFEPLPWIIAFEELGIVLAHH
TTASSERVLKLNNPTHTKLARYLGTENTHHAFLVVEAPLMALATENRALAQPTSFDSR
PIAGGVEDVGTNAPLVVERIRAQIDNSFTILSMEMLHAAQAADLRLKGHPERKLSTAT
TSFHDAFRQRVPFLDRDRSMTPDIAAGTAFLKEYALTN"
misc_feature complement(170059..171597)
/locus_tag="SMa0306"
/note="tyrosine 2,3-aminomutase; Region: Tyr_2_3_mutase;
TIGR03832"
/db_xref="CDD:163544"
misc_feature complement(170191..171588)
/locus_tag="SMa0306"
/note="Phenylalanine ammonia-lyase (PAL) and histidine
ammonia-lyase (HAL) and. PAL and HAL are members of the
Lyase class I_like superfamily of enzymes that, catalyze
similar beta-elimination reactions and are active as
homotetramers. The four active sites...; Region: PAL-HAL;
cd00332"
/db_xref="CDD:28771"
misc_feature complement(order(170569..170571,170653..170655,
170743..170745,170752..170754,171001..171003,
171013..171027,171346..171348,171355..171357,
171436..171438,171442..171444,171448..171456))
/locus_tag="SMa0306"
/note="active sites"
/db_xref="CDD:28771"
misc_feature complement(order(170248..170253,170260..170262,
170269..170274,170290..170292,170299..170319,
170350..170361,170365..170382,170386..170388,
170392..170403,170407..170412,170416..170421,
170452..170454,170461..170463,170470..170472,
170482..170484,170494..170496,170503..170505,
170524..170526,170536..170538,170545..170550,
170554..170574,170578..170580,170641..170649,
170662..170667,170674..170679,170686..170691,
170698..170700,170707..170712,170728..170733,
170740..170745,170749..170757,170761..170763,
170839..170841,170848..170850,170854..170859,
170866..170871,171124..171126,171133..171135,
171169..171174,171256..171258,171319..171342,
171349..171351,171436..171441))
/locus_tag="SMa0306"
/note="tetramer interface; other site"
/db_xref="CDD:28771"
gene complement(172016..173002)
/locus_tag="SMa0307"
/db_xref="GeneID:1235391"
CDS complement(172016..173002)
/locus_tag="SMa0307"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; N-terminus contains bacterial
reg"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435412.1"
/db_xref="GI:16262619"
/db_xref="GeneID:1235391"
/translation="MSRSAIKSISIMQVIDHFNLRSFDLNLLVAFDAMMEEMSVTRAA
QRLKIQQPAMSHNISTLRTLFQDELFIRVGQVMKPTARALNLSGPVRQALRQAQAAVL
MADVFDPATEQRTFRLGLSSEVELLLLPDLTARLRDIAPGIRILARGGDAAEVDAMLD
AGVIDLSVGCSYLPDSRHHCEPLYQSSVLCCFNPQLLEISNPVSLDAYMAAQHAVISQ
TDSLHGCVKDALEHAGAELEVVAAAPDFMSILATARSSAVIATVSSRIAARYGPLLGL
QVSPVPLALSFPPVAMVWPLHMDSDLGCAWLRQQIREAMLRTTETNVADIAA"
misc_feature complement(172070..172948)
/locus_tag="SMa0307"
/note="leucine transcriptional activator; Reviewed;
Region: leuO; PRK09508"
/db_xref="CDD:169932"
misc_feature complement(172754..172930)
/locus_tag="SMa0307"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature complement(172061..172588)
/locus_tag="SMa0307"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
similar to DntR, which is involved in the catabolism of
dinitrotoluene; contains the type 2 periplasmic binding
fold; Region: PBP2_DntR_like_2; cd08464"
/db_xref="CDD:176153"
misc_feature complement(order(172196..172198,172238..172240,
172247..172252,172259..172264,172271..172285,
172367..172369,172556..172558,172562..172576,
172580..172585))
/locus_tag="SMa0307"
/note="putative dimerization interface; other site"
/db_xref="CDD:176153"
gene 173063..174022
/locus_tag="SMa0308"
/db_xref="GeneID:1235392"
CDS 173063..174022
/locus_tag="SMa0308"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435413.1"
/db_xref="GI:16262620"
/db_xref="GeneID:1235392"
/translation="MPSRRSILKSALTGLIVAPFVAPSVTFAKAPFAVVQAPGYYRLK
IGSVEVTALSDGTVALPLAKLYTNTSEHDAQNALKDAFLPDMVPTSVNAFLVNTGERL
VLIDAGTGGYLGASLGKLVSNIEASGYKVGDIDDVILTHIHTDHSGGLMSNGKRTFPN
ATLRVNEREAKFWLSSANAMTATGTVKQHFGEADQCVTPYVKAGKFETFADNAAPVPG
LGSILYAGHTPGHSAITLESESQKIVFWGDITHGDILQFDEPGVAIEFDIDQKAAVAA
RNTAFKQAVEGKYLVAGAHIAFPGIGHVREDSKNYDWLPINYA"
misc_feature 173324..173947
/locus_tag="SMa0308"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:174207"
gene complement(174273..175004)
/locus_tag="SMa0310"
/db_xref="GeneID:1235393"
CDS complement(174273..175004)
/locus_tag="SMa0310"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435414.1"
/db_xref="GI:16262621"
/db_xref="GeneID:1235393"
/translation="MRLTEAGNRLHETLSQPMAEVRSAFENVAGDARPSGLLRIAVTS
IAEQFLSGPLIASFAETHPGITIDVTVTDDVFDIVAAGFDAGVRLGEVIEQDMVAVPL
TKEEREVVVATPRYFELHGTPRHPRELVRHRCVGWRPSPSAAPYRWEFEEDGIPFDVA
VEPQITTNDLHLMIRTALAGGGITFALEETFRPYIVRGELITALDDYLPPFPGFFLYF
PNRRNMAPKLRALIDHVRAYRPTPS"
misc_feature complement(174300..174905)
/locus_tag="SMa0310"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature complement(order(174363..174365,174444..174446,
174495..174497,174687..174689,174696..174698,
174738..174740,174855..174857,174867..174869))
/locus_tag="SMa0310"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature complement(order(174468..174470,174477..174482,
174501..174515,174606..174608,174792..174812,
174816..174818,174828..174830,174837..174842,
174846..174851,174861..174866))
/locus_tag="SMa0310"
/note="putative dimerization interface; other site"
/db_xref="CDD:176163"
gene 175343..175876
/locus_tag="SMa0312"
/db_xref="GeneID:1235394"
CDS 175343..175876
/locus_tag="SMa0312"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435415.1"
/db_xref="GI:16262622"
/db_xref="GeneID:1235394"
/translation="MAFGICAAPVAAQDSSCPREGADAPLALHADWIMKGWERHEGDG
KFEFSQKLNRYYDLENTKGVFYDNFAPGSTQLFDNSARYGANWEALQNAARSVRHGLT
GGHDVIVSDTVASTTLGFVGRIDRLDGAVVAFDGRSQLGWTCTGGEWKIRHELNYAWV
VEPETIQSFLGKTEPAQ"
gene 175873..176124
/locus_tag="SMa0314"
/db_xref="GeneID:1235395"
CDS 175873..176124
/locus_tag="SMa0314"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435416.1"
/db_xref="GI:16262623"
/db_xref="GeneID:1235395"
/translation="MTSQTLSHPYVGMWETTDGRIRHQLLPNGRYDEARGSRESAYRG
RYEVSGNHIEYWDDTGFTADGDFVDDVLHHAGMVLYRKQ"
misc_feature 175894..176118
/locus_tag="SMa0314"
/note="Agrobacterium tumefaciens protein Atu4866; Region:
Atu4866; pfam11512"
/db_xref="CDD:151949"
gene 176207..177469
/locus_tag="SMa0316"
/db_xref="GeneID:1235396"
CDS 176207..177469
/locus_tag="SMa0316"
/function="Miscellaneous; Hypothetical/Partial homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435417.1"
/db_xref="GI:16262624"
/db_xref="GeneID:1235396"
/translation="MTMTHIEQQLENLASPGDRQKHLRGLAVLKQIGGENFGGPVSQL
ASFSEDLARFTIQYPYGDVLSRDGLDLRTRQILTAATLLAHGSAQSQLSFHLYGLLNA
GGTRADVVDLLFISAGLLGFPTAINAVPIVRDILADRDETKNVAGAQTSPAVPDMPSD
RFAVLDRIAPDFVNWREHTLGEEIFGAVHLEPRLAHLASAAMLAARGKVGASFDAHIV
SALAAGATDSDIVEMVIQLSVYSGFPAALNAAGRARNVLAAPERPQASTQKGVDTTKD
DEKRFMRGVATLAETSGGSGADVVDSFKDVAPGLGRLIVAHCYGDIFCRPALDPKVRE
LGAISALAAQGTVAAEKPLGVHIDAALNLGATPEEIVETLFNIIPYAGYPLIEKALLI
AHDRISLFDEKQVDGSPSDHRTLDMCSG"
misc_feature 176261..176626
/locus_tag="SMa0316"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; cl00460"
/db_xref="CDD:153783"
misc_feature 176684..176983
/locus_tag="SMa0316"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; cl00460"
/db_xref="CDD:153783"
misc_feature 177050..177418
/locus_tag="SMa0316"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; cl00460"
/db_xref="CDD:153783"
gene 177973..178974
/locus_tag="SMa0319"
/db_xref="GeneID:1235397"
CDS 177973..178974
/locus_tag="SMa0319"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, AraC family, PF00165"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, AraC family"
/protein_id="NP_435418.1"
/db_xref="GI:16262625"
/db_xref="GeneID:1235397"
/translation="MANIEASRQNVSPPIPAVAGNPIYPAVLVPELNEVIARPDRTSP
LGLEQYIAGRTLVSGDTPAWSDMFVQVYSRLNKQEPFLVPAVAEPLIVWVMSGEAVVE
ERDLDGDWVANTVTVGDFFLTRSPTPYEMRWRSVDAAPFQVMHLYLSVPLFERVAYDV
LGCAAPPALRDISGGRDTQLSHLLALVHQELTAEGKGSQLFIQGLAQSLAVHLIRNYA
ANEADDRQNALTGFKLRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLS
PSRYFIRQRVARAQLLLQETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRRG"
misc_feature <178489..178968
/locus_tag="SMa0319"
/note="Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription]; Region: COG4977"
/db_xref="CDD:34583"
misc_feature 178693..178812
/locus_tag="SMa0319"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 178855..178968
/locus_tag="SMa0319"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 179119..179868
/locus_tag="SMa0320"
/db_xref="GeneID:1235398"
CDS 179119..179868
/locus_tag="SMa0320"
/note="glimmer prediction; short chain motif, PF00106"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435419.1"
/db_xref="GI:16262626"
/db_xref="GeneID:1235398"
/translation="MTSLNGKIALVTGASSGIGAATAAKLAEAGAKVGIAARRTDKLE
DLKKKIEAKGGEALVIEMDVVDTTSVEAGVKKLVDAYGSIDILVNNAGLMPLSDIDQF
KVDEWQRMVDVNVKGLLNTTAAVLPQMIKQHSGHVFNMSSIAGRKVFKGLSVYCATKH
AVTAFSDGLRMEVGQKHGIRVTCIQPGAVATELYDHITDPGYRQQMDELATQMTFLQG
EDIGDTIVFAAQAPAHVDVAELFVLPVEQGW"
misc_feature 179119..179865
/locus_tag="SMa0320"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature 179122..179805
/locus_tag="SMa0320"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05557"
/db_xref="CDD:168093"
gene 179926..180474
/locus_tag="SMa0322"
/db_xref="GeneID:1235399"
CDS 179926..180474
/locus_tag="SMa0322"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435420.1"
/db_xref="GI:16262627"
/db_xref="GeneID:1235399"
/translation="MKELPASQAYRVLEPGPIVMVSTSDNGKPNVMTMGFHTMIQHDP
PLIGCVIGPWDHSYQALRKTGECVIAVPGLDLAETVVDVGNCSGDRVDKLQRYGLMTQ
PARDVSAPLLRDCLANIECRVVDTRLLDPYNLFILEATRIWINENRKERRMMHHRGDG
TFTVDGGTLDLKDRMVRWRHLP"
misc_feature 179926..180429
/locus_tag="SMa0322"
/note="Flavin Reductases; Region: FlaRed; cl00801"
/db_xref="CDD:154006"
gene 180525..180809
/locus_tag="SMa0323"
/db_xref="GeneID:1235400"
CDS 180525..180809
/locus_tag="SMa0323"
/function="Miscellaneous; Unknown"
/note="glimmer prediction; similar to Smc00411 of S.
meliloti chromosome"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435421.1"
/db_xref="GI:16262628"
/db_xref="GeneID:1235400"
/translation="MSAYLIVDLDIHDMKSIEDYRSKALPLVAKAGGKLIAIDESPLE
LEGWIATNMLIIEFPDKDAIRQLFASPEYAPLAAQRQAAAASRIIAINGV"
misc_feature 180525..180752
/locus_tag="SMa0323"
/note="Protein of unknown function (DUF1330); Region:
DUF1330; cl02288"
/db_xref="CDD:154838"
gene 180910..181212
/locus_tag="SMa0325"
/db_xref="GeneID:1235401"
CDS 180910..181212
/locus_tag="SMa0325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435422.1"
/db_xref="GI:16262629"
/db_xref="GeneID:1235401"
/translation="MADLTNVAYFTAKPGRSGELGDELLQLVTPSRNEEGCLRYEIHQ
SNDVPDVWMVLEDWRHASDFKLHMNTPYVQAFMAKVPDLCVEDVEICGYQQRSPQV"
misc_feature 180910..181209
/locus_tag="SMa0325"
/note="Antibiotic biosynthesis monooxygenase; Region: ABM;
cl10022"
/db_xref="CDD:175061"
gene 181233..182072
/locus_tag="SMa0326"
/db_xref="GeneID:1235402"
CDS 181233..182072
/locus_tag="SMa0326"
/note="glimmer prediction; short chain motif, PF00106"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435423.1"
/db_xref="GI:16262630"
/db_xref="GeneID:1235402"
/translation="MSTQNPKVWLVTGCSTGFGRYIAEHLLEVGEKVVVTARKADKIA
DLEQKGDALILPLDVIDRDQCQKVVDAAEAHFGRIDVLINNAGIGFFGAIEETDESNA
RRLFDVNFFGTANTIHSVLPHMRARRSGTIVNLTSIGGLVGYTGVGYYCATKFAVEGL
SDTLRNEVAPLGINVMTVEPSAFRTEWAGSSNEVSASIEDYEATAGEARRAYHTSVGK
QAGDPARAAKAIREAVLAQQPPHHLPLGNDAADAALKKAEDLKANVLAWEALSRSADF
PAN"
misc_feature 181245..182060
/locus_tag="SMa0326"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene 182145..182906
/locus_tag="SMa0329"
/db_xref="GeneID:1235403"
CDS 182145..182906
/locus_tag="SMa0329"
/note="glimmer prediction; N-terminus motif - short chain
dehydrogenase, PF00106; C-terminus motif - short chain
dehydrogenase/reductase C-terminus, PF00678"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435424.1"
/db_xref="GI:16262631"
/db_xref="GeneID:1235403"
/translation="MSKRFDGKVAIVTGGGSGIGAAIANRLLEEGASVMMSGRTEKRL
SDVASKMPADRSGIFVANVSSRPDCDALVAATVERFGRIDTVVNAAGMNFVGTIQETS
DQDWDECIASDLSGVFYMSRAAVPHLKETKGSIVNIGSVSSLGGGWSHAAYNAAKGGV
ANLTRSAACDLGKFGVRANTVAPGLTVTGMVEAIMDDDALLEKAWDRIPLRRAGQPAS
AVAFLASDEAAWITGIVLPVDGGQTCTDGGPEWGK"
misc_feature 182151..182870
/locus_tag="SMa0329"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:168154"
misc_feature 182220..182867
/locus_tag="SMa0329"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene complement(182962..183186)
/locus_tag="SMa5017"
/db_xref="GeneID:6435255"
CDS complement(182962..183186)
/locus_tag="SMa5017"
/note="Predicted membrane protein; Has similarity to the
carboxy-terminal half of DoxX family proteins; Together
with the adjacent gene, SMa0333, may comprise a
pseudogene"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000333.1"
/db_xref="GI:193782559"
/db_xref="GeneID:6435255"
/translation="MTEIVGSIALILGFQTRIVALILALFSVATALTFHNNLSDLNQF
IHFFKNIAMAGGLLQVVAFGAGRYSLDARR"
misc_feature complement(182965..>183183)
/locus_tag="SMa5017"
/note="DoxX; Region: DoxX; cl00976"
/db_xref="CDD:154119"
gene complement(183183..183395)
/locus_tag="SMa0333"
/db_xref="GeneID:1235404"
CDS complement(183183..183395)
/locus_tag="SMa0333"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435425.1"
/db_xref="GI:16262632"
/db_xref="GeneID:1235404"
/translation="MSYSDTIAQRVETLSHSALINGVAPLAGRVLLAAIFLLSGISKI
SDPAGTIGYINMVGLPFPPLSYGAPY"
misc_feature complement(<183204..183326)
/locus_tag="SMa0333"
/note="DoxX; Region: DoxX; cl00976"
/db_xref="CDD:154119"
gene complement(183576..184352)
/gene="fabG"
/locus_tag="SMa0335"
/db_xref="GeneID:1235405"
CDS complement(183576..184352)
/gene="fabG"
/locus_tag="SMa0335"
/note="Catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-(acyl-carrier-protein) reductase"
/protein_id="NP_435426.1"
/db_xref="GI:16262633"
/db_xref="GeneID:1235405"
/translation="MSTSNILDGKVVIVTGASSGIGRAIAIRAAEHGAKAVIVSDVVE
APREGGEPTASEIRKLGAESVFVKADVSRKVDNDALVAAAEEFGGVDVMVANAGITLK
TDGAEVPEDDYRRLMSVNLDGPLFGAQAAARQMKALNKQGSIVLMASMGGISGAGITV
AYSTSKGGVVLMAKSLADALGPDGIRVNAVAPGTIDTELLRTSPGIAQASEGFRQRTP
LRRLGKPAEVGDAVAFLGSDLSSYVSGTALLVDGGLLAVI"
misc_feature complement(183585..184343)
/gene="fabG"
/locus_tag="SMa0335"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK07231"
/db_xref="CDD:168870"
misc_feature complement(183585..184334)
/gene="fabG"
/locus_tag="SMa0335"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene complement(184339..184821)
/locus_tag="SMa0337"
/db_xref="GeneID:1235406"
CDS complement(184339..184821)
/locus_tag="SMa0337"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435427.1"
/db_xref="GI:16262634"
/db_xref="GeneID:1235406"
/translation="MSDHHEASYEALKAVVRRNTLEVQSGGNFELFDELFADDFLDHT
PQPGGTPDKEGARRLYHALREAFPDFHAEIHWQAVDGDIVTTFKTYHGTHQGVVLGSR
QRAARSSSKPSTPCAFATARSSNTGGSPTSTIFCSNSTRCPPRPPKCRNIKDHHDEHQ"
misc_feature complement(<184519..184782)
/locus_tag="SMa0337"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:175003"
gene complement(184847..185620)
/locus_tag="SMa0339"
/db_xref="GeneID:1235407"
CDS complement(184847..185620)
/locus_tag="SMa0339"
/note="glimmer prediction; N-terminus motif - short chain
de"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435428.1"
/db_xref="GI:16262635"
/db_xref="GeneID:1235407"
/translation="MSSLFSNKVVTVTGAGSGIGRAIALGLARDGATVHLADRDADGL
TQTAELIRAEDGRAFTTELDVASELQVVGWIEQIGSTSGRLDAAFNNAGITGPAKRIE
DYPLEDFQRVIAVNLQSVFLGMKYQIPLIKRNGGGSIVNTASIAALTGPGGMSAYAAS
KHGVQGLTRVVAMENAAHGIRVNAIAPGWTETPMVAANSQQNPAFAALAQNAIPAKRG
GKPEEIAAAAIWLASDAASYVTGHMLTVDGGMTIGGFEL"
misc_feature complement(184868..185620)
/locus_tag="SMa0339"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature complement(184871..185614)
/locus_tag="SMa0339"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:168154"
gene complement(185692..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/db_xref="GeneID:1235408"
CDS complement(185692..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/function="Miscellaneous; Not classified regulator"
/note="stationary phase protein that binds TrpR repressor"
/codon_start=1
/transl_table=11
/product="TrpR binding protein WrbA"
/protein_id="NP_435429.1"
/db_xref="GI:16262636"
/db_xref="GeneID:1235408"
/translation="MTRVLVLYYSSYGHIETMAGAVAEGARSTGAEVTIKRVPETVPI
EVADKAHFKLNQAAPVATVAELADYDAIIVGTGTRFGRMSSQMAVFLDQAGGLWARGA
LNGKVGGAFVSTGTQHGGQETTLFSIITNLMHFGMVIVGLPYSHQGQMSVDEIVGGAP
YGATTVAGGDGSRQPSQIDLAGAFHQGEIVARTAAALVAARN"
misc_feature complement(185737..186300)
/gene="wrbA2"
/locus_tag="SMa0340"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:174204"
gene 186524..186718
/locus_tag="SMa0341"
/db_xref="GeneID:1235409"
CDS 186524..186718
/locus_tag="SMa0341"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435430.1"
/db_xref="GI:16262637"
/db_xref="GeneID:1235409"
/translation="MAKGLLGGGEMKFYPQDALTQAGGRFSQSDAPFSAHVVTDRELI
TGQNPASAPAVAQELLKRLK"
misc_feature <186545..186712
/locus_tag="SMa0341"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain; Region: GAT_1; cl00020"
/db_xref="CDD:173987"
gene complement(186903..187337)
/locus_tag="SMa0343"
/db_xref="GeneID:1235410"
CDS complement(186903..187337)
/locus_tag="SMa0343"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435431.1"
/db_xref="GI:16262638"
/db_xref="GeneID:1235410"
/translation="MEKTPDTFVDLGRGTPAWFTFAARILPVGILGQLLSAGLALFRD
SSLWGLHAALGGALSFPAVSLVAGALFVSRLRGFGWWAGLTFLLYLLQVILAAGGMPL
LLSFHPVNGAFLLAASLVLLANVERRRSQSLAEDNATAKPGK"
gene complement(187341..187958)
/locus_tag="SMa0346"
/db_xref="GeneID:1235411"
CDS complement(187341..187958)
/locus_tag="SMa0346"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; similar to General stress
protein 14 (P80871) from Bacillus subtilis"
/codon_start=1
/transl_table=11
/product="NAD(P)H dehydrogenase"
/protein_id="NP_435432.1"
/db_xref="GI:16262639"
/db_xref="GeneID:1235411"
/translation="MRRNLLLVATQETTVTKTLILLFHPDLKRSKANAALAGAAAKLD
GVEVADMQAAYPDSMDMFRDGEREARRLLAADRIVLQFPIQWYSTPPLMKAWQDGVLT
RMFYVTYETEGRALEGTPLMLAATAGNVPESYRPGGRNMFTMEALLAPLRATAHRCGL
SCTAPFIIYQADKLEAEELEAAASNYAATLKNWIAGPLVTRQEAV"
misc_feature complement(187374..187910)
/locus_tag="SMa0346"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:174204"
gene 188006..188893
/locus_tag="SMa0347"
/db_xref="GeneID:1235412"
CDS 188006..188893
/locus_tag="SMa0347"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; N-terminus - bacterial
regulatory helix-turn-helix protein, LysR family, PF00126;
C-terminus - NodD transcription activator carboxy terminal
region, PF01046; start codon changed based on codon usage
and similarity."
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435433.1"
/db_xref="GI:16262640"
/db_xref="GeneID:1235412"
/translation="MNLRSLDLNLLVVLDALLDEAHVSRAADRLGLSQPAASAALQRC
RHLFRDELLERGRGTMRLTSRAEALRAPLKSLLASMMELIGPPEIPLTEIRQVLRITM
ADYPALFVIAQLQRELQPSAPGIDLVIQSWHGGDAARSALVDGTADLAVSVFTAPDDD
LHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPHILVSGRGDTTTPLDAELSRFGLS
RRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGGSLVSFLPPIPVPGFQLHMAWHRR
RAKDAALQHVARILGALLR"
misc_feature 188063..188890
/locus_tag="SMa0347"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature <188069..188206
/locus_tag="SMa0347"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature 188294..188857
/locus_tag="SMa0347"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators that involved in the
catabolism of nitroaromatic/naphthalene compounds and that
of related regulators; contains the type 2 periplasmic
binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
/db_xref="CDD:176109"
misc_feature order(188312..188314,188318..188323,188333..188335,
188510..188512,188618..188620,188810..188812)
/locus_tag="SMa0347"
/note="substrate binding pocket; other site"
/db_xref="CDD:176109"
misc_feature order(188315..188317,188324..188329,188336..188341,
188348..188353,188357..188362,188369..188374,
188378..188392,188396..188398,188585..188587,
188669..188683,188690..188695,188702..188707,
188714..188716)
/locus_tag="SMa0347"
/note="dimerization interface; other site"
/db_xref="CDD:176109"
gene complement(189202..189798)
/locus_tag="SMa0349"
/db_xref="GeneID:1235413"
CDS complement(189202..189798)
/locus_tag="SMa0349"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435434.1"
/db_xref="GI:16262641"
/db_xref="GeneID:1235413"
/translation="MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR
FGASVKAVELKDALQADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPR
DLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQV
AELISSLGFAPVDLGTLAASGPIQQFGRPLVALNLLKD"
misc_feature complement(189217..189798)
/locus_tag="SMa0349"
/note="Predicted dinucleotide-binding enzymes [General
function prediction only]; Region: COG2085"
/db_xref="CDD:32268"
misc_feature complement(189523..189759)
/locus_tag="SMa0349"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature complement(189205..>189630)
/locus_tag="SMa0349"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
gene complement(189834..190730)
/locus_tag="SMa0352"
/db_xref="GeneID:1235414"
CDS complement(189834..190730)
/locus_tag="SMa0352"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; start codon changed based on
codon usage and homology. N-terminus is similar to
Pirin-protein (NP_003653) from humans"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435435.1"
/db_xref="GI:16262642"
/db_xref="GeneID:1235414"
/translation="MSHISTADIEQVILPSSRDLGGFSVRRALPAPMRQMVGPFIFLD
SFGPVRFGEGEGIDTRPHPHIGLSTLTYLLEGELTHRDSERYVQAIRPGEVNVMVAGA
GIVHSERTPEHQRATGGKLAGLQSWIALPKKSEETAPLFQHLDAGSLPTVSGEGIGMK
LLAGNLHGRQSPATVFSDLFAAEVHLEAGARYRIDGEHVERAIFVVAGALEIVGQDGN
FGQDRLLVFKPGSEIVVKATGPARFLAFGGEPLPEKRFIRWNFVATDQERIRHAADLW
RERGFPGVPDDDEFIPLPENFR"
misc_feature complement(189885..190706)
/locus_tag="SMa0352"
/note="Pirin-related protein [General function prediction
only]; Region: COG1741"
/db_xref="CDD:31927"
misc_feature complement(190347..190667)
/locus_tag="SMa0352"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:175009"
misc_feature complement(189885..190187)
/locus_tag="SMa0352"
/note="Pirin C-terminal cupin domain; Region: Pirin_C;
pfam05726"
/db_xref="CDD:147724"
gene 190833..191747
/locus_tag="SMa0353"
/db_xref="GeneID:1235415"
CDS 190833..191747
/locus_tag="SMa0353"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial helix-turn-helix
regulatory protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435436.1"
/db_xref="GI:16262643"
/db_xref="GeneID:1235415"
/translation="MSDPGQPTLDQLRVFIAVVETGSFAAAARKLNRATSVISYTIAN
LEAQLGVTLFDRLSTKKPQLTLEGRTVLAEARSVSNGIDNLRAKVKSMLRGIEPEVHL
ALDVMLPASRVMDALKAFRKEFPSVSLRLYVEALGAVTQIVLNRTATVGISGPLDVDV
LGLERIGVGFVQLVPVAAPDHPLAGGSHAPGAARSHIQLVLTDRSPLTQGHEFAVVGT
HTWRLADLGAKHMLLKEGIGWGNMPEPMVRDDLADGRLVQLDLPDCKGGPYRLQAIYR
TDTPPGPAGRFLIEHFQAQDAKTPTTAW"
misc_feature 190851..191732
/locus_tag="SMa0353"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 190857..191039
/locus_tag="SMa0353"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature 191127..191615
/locus_tag="SMa0353"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:176431"
misc_feature order(191172..191177,191181..191186,191193..191195,
191205..191207,191211..191231,191490..191507,
191523..191528,191532..191537)
/locus_tag="SMa0353"
/note="dimerization interface; other site"
/db_xref="CDD:176102"
gene 191922..192416
/locus_tag="SMa0355"
/db_xref="GeneID:1235416"
CDS 191922..192416
/locus_tag="SMa0355"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435437.2"
/db_xref="GI:193782560"
/db_xref="GeneID:1235416"
/translation="MKGPGTPTFDQLKVFLTVVDVGSFAGAARKLNRATSVVSYTIAN
LEAQLGFALFDRDSTRRPCLTEAGRIVLSETRSVANGVNRLRAKAQGLLQGLEPSLSI
ALDAMLPASRVLDALKGFRSEFPTIPLQIRTEQFRALSMLVRQGDIVIRHEYGRRCNG
GPLA"
misc_feature 191946..192128
/locus_tag="SMa0355"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature 191955..>192329
/locus_tag="SMa0355"
/note="putative DNA-binding transcriptional regulator;
Provisional; Region: PRK11074"
/db_xref="CDD:170934"
gene complement(193272..193553)
/locus_tag="SMa0357"
/db_xref="GeneID:1235418"
CDS complement(193272..193553)
/locus_tag="SMa0357"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435439.1"
/db_xref="GI:16262646"
/db_xref="GeneID:1235418"
/translation="MVDARPVGDYPNLRQLAFLHVSHDWRGKKLALRLYQLCKDTVVG
SGAEGFYISSTPTRRTVEFYLRQGAKLMARPDTTLVSIEPDDIHLAHWF"
misc_feature complement(193275..>193532)
/locus_tag="SMa0357"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00443"
/db_xref="CDD:176420"
gene complement(193562..193807)
/locus_tag="SMa0359"
/db_xref="GeneID:1235419"
CDS complement(193562..193807)
/locus_tag="SMa0359"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435440.1"
/db_xref="GI:16262647"
/db_xref="GeneID:1235419"
/translation="MTMGTIIRPLQRAEVELVWQIERREVVQEIYEVADGRLHLRPQF
YDTREWPDGEPEIYTPILFDCFDHDGVFLGALLEKNL"
misc_feature complement(<193565..193804)
/locus_tag="SMa0359"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00443"
/db_xref="CDD:176420"
gene complement(193804..194493)
/locus_tag="SMa0360"
/db_xref="GeneID:1235420"
CDS complement(193804..194493)
/locus_tag="SMa0360"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="putative transposase"
/protein_id="NP_435441.2"
/db_xref="GI:193782561"
/db_xref="GeneID:1235420"
/translation="MSDPFPDEVDEALWDEACRRAEAVREFLKHRPGKMTAADVALLA
TEVETSRATAYRLIKLFRAGGTVMSLVDRKRGRPEGHRVLDDKREEIIRTTINRHYLT
RNRPTVSQLVRDVQTNCISAGLKRPHRRTIKARLEEIEPQRRAKRRGETEIVKQTQAV
PGVFAASRPLQVVQVDHTKADIFVVDEETRQPIGRPWLTLAMDVCSRMVTGFYLTMDA
PSRLSTRGVAP"
gene 195082..196866
/locus_tag="SMa0364"
/db_xref="GeneID:1235421"
CDS 195082..196866
/locus_tag="SMa0364"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435442.1"
/db_xref="GI:16262649"
/db_xref="GeneID:1235421"
/translation="MDHATKSEATRGSSALPYSDGRSTAAPFHRVRHGLFTAAFSIIP
FSFIVLFAASAGGQSAAVNGLAPQDAVEIHLPGWHTLFGDAAKAALPNGTFTIGSAGA
LELPGIGRVPAAGLHASELAKLIADRLQARSGSHDSPVTIVEPRRPALEGQRVSPPAK
QPAMVEREAMQALGGERSSVEALLRDLAAARKEAEAAREEERAAHQAARDASILHRRH
LAAERQRAAKLTQELTAARVDLETMKTQLKQETNAAHDWKAAVAMIKAAREAAARERS
ERAALEEELRAARREIEAARNGAQMVASEREEPLRHDMVPATGALDTMGVAADGAGAQ
ARKAADTMAERESALEQQRQRAEGLARDLTVLRRDMDSLQAKVAGAIRSKAAALRARR
AGEAALVDAKRALVEERQKIGVYARDLALALQSAAALESRAKLAAAEQAAAAQARKIA
EAAAKRAGEALALELEAGKSLARELDTARRERDAAKEELTQVLAQHTSLKGERAWANG
RELSAARQQHDGKKARTERRVEDVDEPKTRAGNHASERAKTARATGTRSVRELGARKG
RTLETRKPLKIALPNALLPKRWLAPGLW"
misc_feature 195115..>195621
/locus_tag="SMa0364"
/note="Periplasmic protein involved in polysaccharide
export, contains SLBB domain of b-grasp fold [Cell
wall/membrane/envelope biogenesis]; Region: Wza; COG1596"
/db_xref="CDD:31784"
misc_feature 195274..195471
/locus_tag="SMa0364"
/note="Polysaccharide biosynthesis/export protein; Region:
Poly_export; pfam02563"
/db_xref="CDD:145609"
gene 196912..197808
/locus_tag="SMa0367"
/db_xref="GeneID:1235422"
CDS 196912..197808
/locus_tag="SMa0367"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435443.1"
/db_xref="GI:16262650"
/db_xref="GeneID:1235422"
/translation="MVMRKYLTVALLITVAIGPASALDIGVGVSVGGTGVSAGVRTGK
NGTSAGVSTSVGGIGGAKAGTAAGKSGGSSIGASGNLGGIGVGAGVGVGKNGTSAGIG
AGIGGAKAGASVGTSGGSSIRASGNVGRASGGVSTGSVPGAGLSGTGPGNAPSGLAAR
SGSPATGTASRILGAAPEKGVRPSIALPRILWPLKSRRRHERGEWSYPLRFPAPIAAI
TGTPRAVVRVCRQAIAQAASALGGVRVRAVSAGPLHRGRRGTLTAPLDVRIDYAGQGG
REVRQARIRCRLDTSGRVIAVI"
gene 197906..198172
/locus_tag="SMa0369"
/db_xref="GeneID:1235423"
CDS 197906..198172
/locus_tag="SMa0369"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435444.1"
/db_xref="GI:16262651"
/db_xref="GeneID:1235423"
/translation="MYPEMPRAISRSTMDVETDDKSQTIVRGILALAHGLGMRVTAEG
VETADQANWLRNQGCDRLQGNLFSAPIPAGSMEKFLRQSSMASQ"
misc_feature <197930..198124
/locus_tag="SMa0369"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(199105..200004)
/locus_tag="SMa0372"
/db_xref="GeneID:1235425"
CDS complement(199105..200004)
/locus_tag="SMa0372"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory
helix-turn-helix protein, LysR family, PF00126"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, LysR family"
/protein_id="NP_435446.1"
/db_xref="GI:16262653"
/db_xref="GeneID:1235425"
/translation="MNDYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAEL
GVQLFVRTTRQVSLTTDGAIFAAQLQPAVKTIEDARREVMNAHKADEGRLRISAPTWF
GKAVLPPILSAFKERYPKMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIR
VVPRILVAAPGSRFVDMQHPNELTPDDCLAYSGDSRRENWVLSDGGSSITISAGRAFS
ANNGEVLADIAADGAGVAMLPGFHIFEHLRTGRLVHVFKGWAPPDLWLTLYYPPYQAL
PPRIASFSKFFEEQVPAHMVMLD"
misc_feature complement(199123..199998)
/locus_tag="SMa0372"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(199819..199992)
/locus_tag="SMa0372"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cl00088"
/db_xref="CDD:173998"
misc_feature complement(199156..199731)
/locus_tag="SMa0372"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(199207..199209,199288..199290,
199339..199341,199519..199521,199525..199527,
199570..199572,199687..199689,199699..199701))
/locus_tag="SMa0372"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(199312..199314,199321..199326,
199345..199359,199444..199446,199624..199644,
199648..199650,199660..199662,199669..199674,
199678..199683,199693..199698))
/locus_tag="SMa0372"
/note="dimerization interface; other site"
/db_xref="CDD:176114"
gene 200116..201048
/locus_tag="SMa0374"
/db_xref="GeneID:1235426"
CDS 200116..201048
/locus_tag="SMa0374"
/codon_start=1
/transl_table=11
/product="dioxygenase/lyase"
/protein_id="NP_435447.1"
/db_xref="GI:16262654"
/db_xref="GeneID:1235426"
/translation="MIKDIKGLHHVTSMASDARQNNRFFTDTLGLRRVKQTVNFDDPS
VYHLYYGDETGSAGTVMTYFPFPNMMLGRPGVGEVGETQFSVPKGSLKFWQDRFTTQG
VDGLERDTVFGADRLRFMGPDGDSFALIESADDKRAPWLADGIPDDAAIRGFAGARFS
LHDSAATEELLGFMGYERAEKEGDVVRFIISNGNGADTIDLLALPKTPFARQGAGSVH
HIAFAVDNREKQLEVRKALMDTGYQVTPVIDRDYFWAIYFRTPGGILFEVATNEPGFN
RDEDTAHLGEALKLPVRYEEYRGQIQANLVPLAA"
misc_feature 200131..200544
/locus_tag="SMa0374"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; cl00411"
/db_xref="CDD:174185"
misc_feature 200617..200919
/locus_tag="SMa0374"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; cl00411"
/db_xref="CDD:174185"
gene 201366..202055
/locus_tag="SMa0376"
/db_xref="GeneID:1235427"
CDS 201366..202055
/locus_tag="SMa0376"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_435448.1"
/db_xref="GI:16262655"
/db_xref="GeneID:1235427"
/translation="MSKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAK
AAKIFNVPTTITTVETQSFSGNTFPELLAVFPENDLLERTSMNSWDDQNVRDALAKNA
ANGRKKIVVSGLWTEVCNTTFALSALHDVPEYEIYMVADASGGTSSDAHKYAMDRMVQ
AGVIPVTWQQVLLEWQRDWARKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGAEERVK
HGKRIGPNPAK"
misc_feature 201405..201896
/locus_tag="SMa0376"
/note="YcaC related amidohydrolases; E.coli YcaC is an
homooctameric hydrolase with unknown specificity. Despite
its weak sequence similarity, it is structurally related
to other amidohydrolases and shares conserved active site
residues with them...; Region: YcaC_related; cd01012"
/db_xref="CDD:29550"
misc_feature 201405..201875
/locus_tag="SMa0376"
/note="Isochorismatase family; Region: Isochorismatase;
pfam00857"
/db_xref="CDD:144449"
misc_feature order(201417..201419,201612..201614,201720..201722)
/locus_tag="SMa0376"
/note="catalytic triad; other site"
/db_xref="CDD:29550"
misc_feature order(201426..201428,201435..201437,201573..201575)
/locus_tag="SMa0376"
/note="dimer interface; other site"
/db_xref="CDD:29550"
misc_feature 201705..201710
/locus_tag="SMa0376"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:29550"
gene 202120..202407
/locus_tag="SMa5018"
/db_xref="GeneID:6435256"
CDS 202120..202407
/locus_tag="SMa5018"
/note="pfam07235, DUF1427, Protein of unknown function
(DUF1427); This family consists of several bacterial
proteins of around 100 residues in length; The function of
this family is unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000334.1"
/db_xref="GI:193782562"
/db_xref="GeneID:6435256"
/translation="MKVYLLSLGAGLLVGIVYSLLNVRSPAPPVIALVGLLGILVGEQ
IIPFAKTLWRSEPAAISWLHQIKPHMFGHLPKGSDRIEIAHQAKARVEERS"
misc_feature 202120..202389
/locus_tag="SMa5018"
/note="Protein of unknown function (DUF1427); Region:
DUF1427; cl01771"
/db_xref="CDD:154582"
gene 202407..204389
/locus_tag="SMa0380"
/db_xref="GeneID:1235428"
CDS 202407..204389
/locus_tag="SMa0380"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="NP_435449.1"
/db_xref="GI:16262656"
/db_xref="GeneID:1235428"
/translation="MATRRSFLGGASSLAFANFFSPAKAADPNQTGVDTMHPDLILHN
GRVTTLDRTNPNATAIAIKDGLFLEVGSDSEVMALAGSGTKIVDLKGKGVLPGLIDNH
THVVRGGLNYNMELRWDGVRSLADAMDMLKRQVAITPAPQWVRVVGGFTEHQFAEKRL
PTIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTG
LLLAKPNAGILYSTLAKGPKLPLDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDD
YEVIQKLSDENQMTVRLAYNLFTQKPKEEKQDFLNWTQSVKYKQGNDYFRHNGAGEML
VFSAADFEDFRQPRPEMAPEMEGELEEVLRVLAENRWPWRLHATYDETISRALDVFEK
VNKDIPLEGLNWFFDHAETISDRSIDRIAALGGGIATQHRMAYQGEYFAERYGHGVAE
ATPPIRRMLDKGVNVSAGTDATRVASYNPWVSLSWMVTGKTVGGMQLYPRANCLDRET
ALRMWTEKVTWFSNEEGKKGRIEKGQFADLVVPDKDFFSCAEDEISFIVSELTMVGGK
IVYGAGDFKTLDENEIPPAMPDWSPVRKFGGYAAWGEPERAGARSLRRTAISTCGCAS
DCGVHGHDHAGAWTSKLPIADLKGFFGALGCSCWAV"
misc_feature 202509..204122
/locus_tag="SMa0380"
/note="Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only];
Region: COG1574"
/db_xref="CDD:31762"
misc_feature 202581..204026
/locus_tag="SMa0380"
/note="YtcJ_like metal dependent amidohydrolases. YtcJ is
a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling; Region: YtcJ_like;
cd01300"
/db_xref="CDD:30043"
misc_feature order(202710..202712,202716..202718,203532..203534,
203628..203630,203814..203816)
/locus_tag="SMa0380"
/note="active site"
/db_xref="CDD:30043"
gene 204550..204993
/locus_tag="SMa5019"
/db_xref="GeneID:6435257"
CDS 204550..204993
/locus_tag="SMa5019"
/note="Predicted membrane protein; Similar to S; meliloti
SMa1817"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002000335.1"
/db_xref="GI:193782563"
/db_xref="GeneID:6435257"
/translation="MTYHSQLSNPIRSGVARVVGSPVVRTVSLLALCAAYIQGPLTKI
FDFNGALAEMDHFGLHPAPFFAVAVIVFELTASAMVISGLLRWAGALALAGFTLLATF
IALRFWEMAPGMDRMMATNAFFEHLGLAGAFVFVAAFDLTKGAGK"
misc_feature 204637..>204792
/locus_tag="SMa5019"
/note="DoxX; Region: DoxX; cl00976"
/db_xref="CDD:154119"
gene 204990..206588
/locus_tag="SMa0383"
/db_xref="GeneID:1235429"
CDS 204990..206588
/locus_tag="SMa0383"
/function="Miscellaneous; Hypothetical/Global homology"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435450.1"
/db_xref="GI:16262657"
/db_xref="GeneID:1235429"
/translation="MSAAKSSGGTFAPLAQPVFAVLWTATVLGNTGSFMRDVASAWLM
TDLSASPAAVAMVQAAGTLPIFLLAIPAGVLTDILDRRKFLIAVQLLLASVSISLMVL
SQTGMLSVSSLIGLTFLGGIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARS
IGPAAGGLLLAAFGAGITYGADVASYIVVIAALVWWPRAKNANDALQENFFGAFRAGL
RYTRSSTPLHVVLLRAAIFFAFASAVWALLPLVARQLLGGDAGFYGILLGAVGAGAIG
GALVMPKLRERLSSDGLLLGAALITAAVMGVLALAPPKVVAIIVLLFLGGAWITALTT
LNGTAQSVLPNWVRGRGLAVYLTVFNGAMTAGSLGWGAVGEAVGIQSTLIIGAIGLLI
AGLIMHRVKLPAGDADLVPSNHWPEPLVAEPIAHDRGPVLILIEYKVEKQHRTAFLHA
IDHLSRERRRDGAYGWGVTEDSADPEKIVEWFMVESWAEHLRQHKRVSNADADLQGKV
LAYHVGPDKPVVRHFMTINRPGAA"
misc_feature 205014..206579
/locus_tag="SMa0383"
/note="Bacterial protein of unknown function (DUF894);
Region: DUF894; pfam05977"
/db_xref="CDD:147889"
misc_feature 205044..206135
/locus_tag="SMa0383"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(205086..205088,205095..205103,205107..205112,
205161..205163,205170..205175,205182..205184,
205194..205199,205203..205208,205359..205364,
205371..205376,205383..205388,205395..205397,
205431..205436,205443..205448,205464..205466,
205698..205700,205707..205709,205713..205715,
205722..205727,205734..205736,205776..205778,
205788..205790,205800..205802,205809..205811,
205821..205823,205962..205964,205971..205976,
205983..205985,205995..206000,206007..206009,
206040..206045,206052..206057,206064..206069,
206076..206078)
/locus_tag="SMa0383"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
repeat_region complement(207549..208846)
/standard_name="ISRm3"
/note="SMa3002; predicted by homology"
/rpt_family="ISRm3"
gene complement(207586..208788)
/locus_tag="SMa0384"
/db_xref="GeneID:1235430"
CDS complement(207586..208788)
/locus_tag="SMa0384"
/function="Elements of external origin; Transposon-related
functions"
/codon_start=1
/transl_table=11
/product="TRm3 transposase"
/protein_id="NP_435451.1"
/db_xref="GI:16262658"
/db_xref="GeneID:1235430"
/translation="MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELD
DHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPDF
DDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYP
LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELK
NRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPAL
RAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYT
TNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAV
IFGERFFN"
misc_feature complement(207652..208782)
/locus_tag="SMa0384"
/note="Transposase, Mutator family; Region:
Transposase_mut; pfam00872"
/db_xref="CDD:109910"
misc_feature complement(208015..208251)
/locus_tag="SMa0384"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:151094"
gene complement(209020..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/db_xref="GeneID:1235431"
CDS complement(209020..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/EC_number="2.6.1.9"
/note="catalyzes the formation of
3-(imidazol-4-yl)-2-oxopropyl phosphate and L-glutamate
from L-histidinol phosphate and 2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate aminotransferase"
/protein_id="NP_435452.1"
/db_xref="GI:16262659"
/db_xref="GeneID:1235431"
/translation="MAIPSRPIREEIRSIAPYNAGLTLEEVRAKYHVDEVAKLSSNEN
PLGPSPALRRLFPDIGELARLYPDPQGRALCARLAASFDVENNQVILGNGSEDLIAVI
CRSVVRAGDTVVTLYPSFPLHEDYTTLMGGKVDRVTVTPDLSVDMDALLAAIARKPRM
LMFSNPMNPVGSWLTPLQLAKVVAALDPETLIVVDEAYAEYAAGDDYPSAAEVLKVTG
LNWVVLRTFSKAYGLAGLRIGYGIVSDGSLCDFFNRARTPFNTNAIAQVSALAAFDDT
YHLNRSVELALVERERMKKELATMGYRIAPSKCNFLFFDARTEATPVAEALLRRGVIV
KPWKQPRFETYIRVSIGSPVENDHFIHALKEVEAVG"
misc_feature complement(209023..210132)
/gene="hisC3"
/locus_tag="SMa0387"
/note="histidinol-phosphate aminotransferase; Provisional;
Region: PRK05166"
/db_xref="CDD:101643"
misc_feature complement(209038..210021)
/gene="hisC3"
/locus_tag="SMa0387"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(209422..209424,209446..209451,
209455..209457,209539..209541,209629..209631,
209773..209775,209845..209853))
/gene="hisC3"
/locus_tag="SMa0387"
/note="pyridoxal 5'-phosphate binding site; other site"
/db_xref="CDD:99734"
misc_feature complement(order(209329..209331,209338..209340,
209422..209430,209560..209562,209743..209745,
209842..209844))
/gene="hisC3"
/locus_tag="SMa0387"
/note="homodimer interface; other site"
/db_xref="CDD:99734"
misc_feature complement(209446..209448)
/gene="hisC3"
/locus_tag="SMa0387"
/note="catalytic residue; other site"
/db_xref="CDD:99734"
gene 210263..211030
/locus_tag="SMa0389"
/db_xref="GeneID:1235432"
CDS 210263..211030
/locus_tag="SMa0389"
/note="glimmer prediction; N-terminus - short chain
motif, PF00106; C-terminus - short chain
dehydrogenase/reductase C-terminus motif, PF00678"
/codon_start=1
/transl_table=11
/product="short chain alcohol dehydrogenase-related
dehydrogenase"
/protein_id="NP_435453.2"
/db_xref="GI:193782564"
/db_xref="GeneID:1235432"
/translation="MTSPIFDLSGRRALVTGASRGIGQSIAVALAEAGAHVAVTARTV
EGLAETRALIEKTGRRAVALAQDVRDVEACASVTRAAAEGLGGLDILVNNAGFENVRP
SFDVDEALWDTIVSTNLKGAFFCAQAAGRIMADANGGAIVNLCSLTSYVGIPTAVPYG
ASKSGLLGVTRALATEWAAHNIRVNAIAPGYFRTAMTAGFYEDEDWQSRMLEKIPQRR
FGKESDIGGVAVFLCSDAAAYITGHCIPADGGYLASI"
misc_feature 210278..211012
/locus_tag="SMa0389"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:176428"
misc_feature 210278..211012
/locus_tag="SMa0389"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05557"
/db_xref="CDD:168093"
gene 211336..212469
/locus_tag="SMa0391"
/db_xref="GeneID:1235433"
CDS 211336..212469
/locus_tag="SMa0391"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; ABC transporter, PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter, ATP-binding protein"
/protein_id="NP_435454.1"
/db_xref="GI:16262661"
/db_xref="GeneID:1235433"
/translation="MGAVAAGLRPTGSVNPGAVSVKDVGMAFGDVHAVRNASFDLPKG
RFLTILGPSGSGKTTLLRMIAGFDRPTHGEIFINGRPVSAVPPHKRAIGMVFQKLALF
PHMTAAENVAFPLKMRRHDARTIPEKVERYLDLVRLGGYGDRRINELSGGQQQRVAIA
RALVFEPDLLLLDEPLAALDRKLREEMQLEFRRIQKELGVTTINVTHDQREALVVSDE
IIIMNGGAIQQKARPVDAYRAPSNAFVANFIGVTNFLEGRIVELTSTQAVFETNGVRL
VGIAADAALAPGLSCSGALRAEQIRIAPMGGRLDELETLVDGQVVDCIFEGDRVVYEI
RVPDLAGVLMRVFDHDPESHLQFGPGDEVRLGWNARDMHVFQK"
misc_feature 211378..212466
/locus_tag="SMa0391"
/note="ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: PotA; COG3842"
/db_xref="CDD:33633"
misc_feature 211390..212085
/locus_tag="SMa0391"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop NTPase; cl09099"
/db_xref="CDD:158411"
misc_feature 211486..211509
/locus_tag="SMa0391"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(211495..211500,211504..211512,211624..211626,
211852..211857,211954..211956)
/locus_tag="SMa0391"
/note="ATP binding site; other site"
/db_xref="CDD:72971"
misc_feature 211615..211626
/locus_tag="SMa0391"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 211780..211809
/locus_tag="SMa0391"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 211840..211857
/locus_tag="SMa0391"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 211864..211875
/locus_tag="SMa0391"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 211942..211962
/locus_tag="SMa0391"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 212215..212460
/locus_tag="SMa0391"
/note="TOBE domain; Region: TOBE_2; cl01440"
/db_xref="CDD:163979"
gene 212503..213618
/locus_tag="SMa0392"
/db_xref="GeneID:1235434"
CDS 212503..213618
/locus_tag="SMa0392"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic solute-binding
protein"
/protein_id="NP_435455.1"
/db_xref="GI:16262662"
/db_xref="GeneID:1235434"
/translation="MSHEKFLSAQIGRRTLLASMAAAGASAGLSTLGVSRAFAQEPEK
PAEIIVRAWGGSWVDALKAGVSDSFTKMTGIAVRHDLTEDNEIQPKVWAAVAQKRVPP
IHINWDTTTNATKSALRGVTEDLSDLPNLKNATDLAKPVGLDGYPIVNTYGYVYVLAY
RPSAFPNGAPKSWKDLLDPKLKGRIALYNDGIGFHFPAQVAGGGKLEDIPANMQPAWD
FISKIKEQQPLLGEDPDFTTWFQKGEIDAACTISTNAREAKKNGIEIAWVVPEEGAKF
DTDGLWIPKGLPENELYWAKQYINHALTKEAQQIWLDGLGLPGVIPGITPPADLVGDP
SYPTTEEDFKQLIRISAKVQVENESQWFAKFKEIMQG"
misc_feature 212617..213606
/locus_tag="SMa0392"
/note="Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]; Region: PotD;
COG0687"
/db_xref="CDD:31031"
misc_feature 212701..213543
/locus_tag="SMa0392"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:176431"
gene 213683..214627
/locus_tag="SMa0394"
/db_xref="GeneID:1235435"
CDS 213683..214627
/locus_tag="SMa0394"
/function="Cell processes; Transport of small molecules"
/note="glimmer prediction; binding-protein-dependent
transport systems inner membrane component, PF00528"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435456.1"
/db_xref="GI:16262663"
/db_xref="GeneID:1235435"
/translation="MRAPRAAYPLTWRVMDVLERLAAIVWPSSFQRGLPYLMLMPALV
LVGLLVLGLVQIGDTSLRTLDTNTFLMSESYTLANYQRVLTESFFATVAGRSLVGSVI
VTVITLLLAFPYAYLMVRTPSSALRKFLLVALFLPFFIGQVVRAYGWLIILGNQGMVN
EALGLVGVPPIRLLYNYPAVLFGLVQYMLPFAVLMLAPALTAIPSELEAAAASLGAGW
TRTFRHIVLPLSRPGLVGAGLVVLTLSLTDFAIPAILGGGTQDFIANAIYDQFFRTSD
QGMGATLSLMLVAVGSMLVGVVFMLFGAGTLAMTGDRK"
misc_feature 213860..214579
/locus_tag="SMa0394"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:174197"
gene 214624..215424
/locus_tag="SMa0396"
/db_xref="GeneID:1235436"
CDS 214624..215424
/locus_tag="SMa0396"
/function="Cell processes; Transport of small molecules"
/codon_start=1
/transl_table=11
/product="ABC transporter, permease"
/protein_id="NP_435457.1"
/db_xref="GI:16262664"
/db_xref="GeneID:1235436"
/translation="MTGSKSKSFVLWAFVTTALLMLSAPTVVVLGASFTAGNIITFPP
DGLSLKWYGAIAQASDLRQAFVRSLIVATICTLVSIPVGTLAGIALAKYRVRFARSIQ
IYLLLPFTIPLIGSGIGMMLVLGNMGVLGKLWPVGIACAVINLPFMIWAVTASASNLS
PDLELAAANCGAPPLQRFLYITLPAVLPGVITGSLLMFILALNEFLVSLLLVDARSVT
LPVQIYNSIRSIITPDLAAISVVFIACAGLAIALLDRLVGLDIFLKSK"
misc_feature 214816..215373
/locus_tag="SMa0396"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(214864..214869,214876..214881,214894..214896,
214924..214935,214939..214968,214975..214980,
214984..214986,215047..215052,215056..215058,
215062..215064,215071..215076,215080..215082,
215092..215097,215104..215106,215155..215157,
215197..215202,215209..215211,215230..215241,
215248..215253,215290..215295,215323..215328,
215335..215340,215344..215349,215356..215361,
215368..215373)
/locus_tag="SMa0396"
/note="dimer interface; other site"
/db_xref="CDD:119394"
misc_feature order(214942..214986,215230..215247)
/locus_tag="SMa0396"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(214984..214986,215032..215034,215248..215250,
215284..215286,215293..215295,215323..215325)
/locus_tag="SMa0396"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(215107..215145,215161..215166,215176..215178)
/locus_tag="SMa0396"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 215421..216791
/gene="hisD2"
/locus_tag="SMa0398"
/db_xref="GeneID:1235437"
CDS 215421..216791
/gene="hisD2"
/locus_tag="SMa0398"
/EC_number="1.1.1.23"
/function="Small molecule metabolism; Amino acid
biosynthesis; histidine"
/note="catalyzes the oxidation of L-histidinol to
L-histidinaldehyde and then to L-histidine in histidine
biosynthesis; functions as a dimer"
/codon_start=1
/transl_table=11
/product="histidinol dehydrogenase"
/protein_id="NP_435458.3"
/db_xref="GI:187729962"
/db_xref="GeneID:1235437"
/translation="MTLRPQLARYKDKTMTSVSFYEYSKLNAEEKAALLRRSETDISG
FIEKVAPILEAVRTEGDKALARFGRELDKADVTEANLKVTAAEFDAAFKLVDASVLES
VQFGIDNIRKFHEEQKPEAMWLKEIRPGAFAGDRFTPIQSVALYVPRGKGSFPSVTMM
TSVPAVVAGVPNLAIVTPPAPDGSVDAATLVAARLAGVETVYKAGGAQAVAAVAYGTE
TVKPALKIVGPGSPWVVAAKRSLSGVIDTGLPAGPSEVMILADDTVHGGLAALDLLIE
AEHGPDSSAYLVTHSGRVAEEALAALPEHWARMTEQRTAFSKTVLSGKTGGIVLTSSI
EESYEFVNAYAPEHLELLSEQPFIHLGHITEASEILMGTHTPVSIANFSLGPNAVLPT
SRWARTFGPLSVTDFVKRSSIGYVTAPAYPEFARHSHNLAIYEGFSSHALAVSPVRDA
YLKKGA"
misc_feature 215493..216776
/gene="hisD2"
/locus_tag="SMa0398"
/note="Histidinol dehydrogenase [Amino acid transport and
metabolism]; Region: HisD; COG0141"
/db_xref="CDD:30490"
misc_feature 215556..216740
/gene="hisD2"
/locus_tag="SMa0398"
/note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes
the last two steps in the L-histidine biosynthesis
pathway, which is conserved in bacteria, archaea, fungi,
and plants. These last two steps are (i) the NAD-dependent
oxidation of L-histidinol to L...; Region: Histidinol_dh;
cd06572"
/db_xref="CDD:119329"
misc_feature order(215631..215633,215856..215858,215862..215867,
215889..215891,215952..215954,216033..216038,
216042..216044,216105..216113,216117..216122,
216255..216257)
/gene="hisD2"
/locus_tag="SMa0398"
/note="NAD binding site; other site"
/db_xref="CDD:119329"
misc_feature order(215712..215717,215724..215729,215733..215735,
215742..215747,215754..215759,215766..215771,
215793..215795,215799..215801,215811..215825,
215832..215834,215838..215840,215874..215888,
216090..216092,216135..216137,216147..216149,
216219..216224,216231..216236,216240..216248,
216252..216257,216474..216476,216489..216491,
216498..216503,216507..216533,216537..216539,
216543..216548,216552..216566,216570..216572,
216576..216578,216606..216611,216615..216629,
216633..216638,216645..216668,216711..216716,
216720..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="dimerization interface; other site"
/db_xref="CDD:119329"
misc_feature order(215880..215882,215886..215888,216180..216182,
216255..216257,216459..216464,216549..216551,
216561..216566,216582..216584,216723..216725,
216729..216731,216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="product binding site; other site"
/db_xref="CDD:119329"
misc_feature order(215886..215888,216180..216182,216246..216248,
216255..216257,216459..216464,216549..216551,
216561..216566,216582..216584,216723..216725,
216729..216731,216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="substrate binding site; other site"
/db_xref="CDD:119329"
misc_feature order(216246..216248,216255..216257,216561..216563,
216738..216740)
/gene="hisD2"
/locus_tag="SMa0398"
/note="zinc binding site; other site"
/db_xref="CDD:119329"
misc_feature 216459..216464
/gene="hisD2"
/locus_tag="SMa0398"
/note="catalytic residues; other site"
/db_xref="CDD:119329"
gene 216795..217808
/locus_tag="SMa0400"
/db_xref="GeneID:1235438"
CDS 216795..217808
/locus_tag="SMa0400"
/note="zinc-binding motif, PF00107"
/codon_start=1
/transl_table=11
/product="Dehydrogenase, Zn-dependent"
/protein_id="NP_435459.1"
/db_xref="GI:16262666"
/db_xref="GeneID:1235438"
/translation="MKAVRLYDIRDLRVEEVAELAAPPPGFVNLEVRAAGICGSDLHN
YRTGQWISRRPSTAGHEFCGRVTAIGEGVSHLVRGDVVSADSRMWCGTCPACASGRSN
VCETLGFLGEVCDGGFAEAVQLPSRLVFRHDPKLSPHVAAMAEPLAVALHAVRRLAVP
DGAPVLVMGCGTIGGLSALLLSRLHQGPLLLTDLNADKAALVAEVTGGVVVALDGAAI
EEALPGTRLRHALDATGSIQAIARALDILSGGGALALVGIGHGKLDLDPNILVEREIS
LVGCHAFAGELPEAIELLADLAPALQRFIEVLPTLDDVPEAYERLLRGESNALKTIIE
VAG"
misc_feature 216795..217796
/locus_tag="SMa0400"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature 216795..217793
/locus_tag="SMa0400"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy)...; Region:
AdoMet_MTases; cl12011"
/db_xref="CDD:176435"
misc_feature order(216906..216914,216921..216923,217227..217229,
217239..217241,217299..217316,217371..217376,
217386..217388,217491..217496,217560..217565)
/locus_tag="SMa0400"
/note="NAD(P) binding site; other site"
/db_xref="CDD:176178"
misc_feature order(216906..216908,216972..216974,217227..217229)
/locus_tag="SMa0400"
/note="catalytic Zn binding site; other site"
/db_xref="CDD:176178"
gene 217871..218602
/locus_tag="SMa0402"
/db_xref="GeneID:1235439"
CDS 217871..218602
/locus_tag="SMa0402"
/function="Miscellaneous; Not classified regulator"
/note="glimmer prediction; bacterial regulatory protein,
gntR family, PF00392"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator, GntR family"
/protein_id="NP_435460.1"
/db_xref="GI:16262667"
/db_xref="GeneID:1235439"
/translation="MNTLSDSASPLYEKVKDFVLGNIGSGKWARNSRLPSENELVSAL
GVSRMTVHRALRELTSEGHLRRIQGVGTFVAPPRPRSTLIEISNIITEIKTRGSRHRA
EVVVLERIARPEPELLLAFEFETVKPVDHSVVIHFENDLPVQLEERYVNPNLVSGYID
QDFAAVATYDYLQNATPLTEVEHLISALPANAEQARLLNVRPGDCCLILHRKTWTGPV
VATVNTFTYVGSRYSLGSRYLHGGK"
misc_feature 217898..218584
/locus_tag="SMa0402"
/note="histidine utilization repressor, proteobacterial;
Region: his_ut_repres; TIGR02018"
/db_xref="CDD:162662"
misc_feature 217898..218095
/locus_tag="SMa0402"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(217898..217900,217904..217906,217973..217975,
217979..217984,218006..218020,218024..218029,
218036..218038,218066..218071,218075..218086)
/locus_tag="SMa0402"
/note="DNA binding site"
/db_xref="CDD:153418"
misc_feature 218156..218569
/locus_tag="SMa0402"
/note="UTRA domain; Region: UTRA; cl06649"
/db_xref="CDD:176424"
gene 218550..219938
/locus_tag="SMa0403"
/db_xref="GeneID:1235440"
CDS 218550..219938
/locus_tag="SMa0403"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435461.1"
/db_xref="GI:16262668"
/db_xref="GeneID:1235440"
/translation="MSAAATRSAAAICTAASDRRSYALKDPSGKNAMSQPTSRTAEIR
KVAKTGDGKAEQLLAELLRDLFRIEARNVAINHDQYSLNSLNGFFETEDGAFFFKFHQ
EEGEEAMSGEYYRADILARAGLPVDQPLLMSVIPGEQILVYRRRTDPRFSDVLRALDL
KDDAAARGRAVEAERRLSEAVLKVYLATLHTVGAREVAAEPIHRLFYERLVDRSAASY
PGGRMASFYVGKDFAFPNLTLDWETLSRCRFVVNGIEYSDSIGALFDAAHERLNPARL
ADAGGVVAHGDAHNANVWYEERDGGAHLSFFDPAFAGENIPALLAEVKTTFHNILAHP
LWLYDPAMAAGRYKASAVLDGALLRVTTDFAPSPVRRALLDVKAEALWRPLLSELKAR
GMLPADWRRVIRLGLFLCPTLVMNLRAGATTHNAISSLIGFSVAVMAGSEPVAGDDLI
SRFIDTIDPDNG"
gene 219940..221085
/locus_tag="SMa0404"
/db_xref="GeneID:1235036"
CDS 219940..221085
/locus_tag="SMa0404"
/note="glimmer prediction; FMN-dependent motif, PF01070"
/codon_start=1
/transl_table=11
/product="FMN-dependent dehydrogenase"
/protein_id="NP_435462.1"
/db_xref="GI:16262669"
/db_xref="GeneID:1235036"
/translation="MALVNIDDFRDLARRRRPKIFFDYIDGGSFEEETMRANRSDFSR
LTLRQNVLVEPQPQDLATAYLGKRHPLPFMLGPVGFLGLYSGKGEVKAVRAAHAAGIP
FCLSTFSIASLADLRIVTDGPLHFQLYVLEDRSLCEEFLRAAEYAGVDTLFVTVDTAI
TGIRERDVRNGFRSLTRVTPDLFARLALKPRWLAEVVLAGMPSVRAVEHRPEFGRGAL
EQAANLSRRIDKTLSWKDIAWLRERWAGKLVIKGVLTPADAVRARDLGCDGVVVSNHG
GRQLDGAPSTIRALPSIRATVGTDFCLMLDGGIRRGADVIKAIALGADGVMLGRAYAY
GLSAAGQAGVAEVIAILEREISISLALMGIASVEQLKALGAEAVSTL"
misc_feature 219940..221055
/locus_tag="SMa0404"
/note="L-lactate dehydrogenase; Provisional; Region: lldD;
PRK11197"
/db_xref="CDD:171019"
misc_feature 219958..221049
/locus_tag="SMa0404"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:176427"
misc_feature order(220858..220863,220924..220929)
/locus_tag="SMa0404"
/note="phosphate binding site; other site"
/db_xref="CDD:73384"
gene 221438..221725
/locus_tag="SMa0405"
/db_xref="GeneID:1235037"
CDS 221438..221725
/locus_tag="SMa0405"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="transposase, fragment"
/protein_id="NP_435463.2"
/db_xref="GI:193782565"
/db_xref="GeneID:1235037"
/translation="MTPKKCQSSESDHSGRISKIGDGSVRTALYEAANVILTRPVKGS
DLKGWALAVARRAGPRKARVALARKLAVVLHCMLRDRTNFIAHKGAPALAA"
misc_feature <221438..221554
/locus_tag="SMa0405"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:145490"
gene 222078..222866
/locus_tag="SMa0407"
/db_xref="GeneID:1235038"
CDS 222078..222866
/locus_tag="SMa0407"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435464.1"
/db_xref="GI:16262671"
/db_xref="GeneID:1235038"
/translation="MELRVGGAKPSDNSPAASKGFSDPLDSHGVPGRSKQYLIHSAFT
GTIGGVAMAYVDWAIKGPKIASCSCDYGCPCEFNGKPTEGLCEGLECMLIEEGWFGDL
RLDGLKVAAVYRWPGPVHEGGGVVRGFFDANADQAQIDALFTILGGKEQEPTTVFNIY
GSTIAQELEPIFAPIEFHSDIEKRTGGFRIDGHLELELEPIRNPVTGAPHRARIVLPE
GFEFRQAEIASGTFNANGEIAMGRQKRYGALWRAAYGPYGIIEE"
misc_feature 222228..222851
/locus_tag="SMa0407"
/note="Protein of unknown function (DUF1326); Region:
DUF1326; cl02375"
/db_xref="CDD:154882"
gene complement(223861..224175)
/locus_tag="SMa0412"
/db_xref="GeneID:1235040"
CDS complement(223861..224175)
/locus_tag="SMa0412"
/function="Miscellaneous; Unknown"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435466.2"
/db_xref="GI:193782566"
/db_xref="GeneID:1235040"
/translation="MIKMSVYYPADGGSKFDHDYYRTRHMPLIQERLGDACLRYEIDK
GLAGREPGSAPEFVAACHVYSPSLATFQEALGPHRSEIAADVANYTDIAPIVQISEVV
EG"
misc_feature complement(223864..224172)
/locus_tag="SMa0412"
/note="EthD protein; Region: EthD; cl06234"
/db_xref="CDD:157104"
gene 224805..226475
/locus_tag="SMa0414"
/db_xref="GeneID:1235041"
CDS 224805..226475
/locus_tag="SMa0414"
/function="Miscellaneous; Hypothetical/Global homology"
/note="glimmer prediction; C-terminal DNA ligase motif,
PF01068"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_435467.1"
/db_xref="GI:16262674"
/db_xref="GeneID:1235041"
/translation="MADNLSKDRAKRDFKKTREPSGEAQVKPSNRRRFVIQKHDATRL
HYDLRLELDGVFKSWAVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTV
MLWDRGYWEPEGRKSPEEALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLI
KHRDDYSVDENGAAILEENATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDS
KHGLAAEERKKGSRRDVATSTAADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQ
MRIADGKVTLKTRKGLDWTAKYPEIADAASELPDCIIDGEICALDDNGAPDFAALQAA
LSEGKTGNLVYFAFDLLFDGGEDLRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESG
GDAVLRSACKLSLEGIVSKQMDAPYQSGRTDTWAKSKCRAGHEVVIGGYATTNGKFRS
LLVGVHRGDHFVYVGRVGTGFGAAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWL
PDGRALPACRVRSSTDVVRFRRSGRSPRALRSDRSEGRASCPRRLSPV"
misc_feature 224817..225299
/locus_tag="SMa0414"
/note="DNA ligase D, 3'-phosphoesterase domain; Region:
LigD_PE_dom; TIGR02777"
/db_xref="CDD:131824"
misc_feature 225021..226430
/locus_tag="SMa0414"
/note="ATP-dependent DNA ligase [DNA replication,
recombination, and repair]; Region: CDC9; COG1793"
/db_xref="CDD:31978"
misc_feature 225543..226097
/locus_tag="SMa0414"
/note="The Adenylation domain of Mycobacterium
tuberculosis LigD-like ATP-dependent DNA ligases is a
component of the catalytic core unit; Region:
Adenylation_DNA_ligase_LigD; cd07906"
/db_xref="CDD:153267"
misc_feature order(225603..225614,225618..225626,225666..225674,
225678..225680,225684..225686,225750..225752,
225786..225791,225798..225806,225846..225848,
226020..226022,226029..226031,226035..226037,
226077..226079,226083..226085,226089..226091)
/locus_tag="SMa0414"
/note="active site"
/db_xref="CDD:153267"
misc_feature order(225609..225611,225618..225626,225666..225674,
225678..225680,225684..225686,225786..225791,
225798..225806,226020..226022,226083..226085,
226089..226091)
/locus_tag="SMa0414"
/note="DNA binding site"
/db_xref="CDD:153267"
misc_feature 226104..226439
/locus_tag="SMa0414"
/note="The Oligonucleotide/oligosaccharide binding
(OB)-fold domain of ATP-dependent DNA ligase LigD is a
DNA-binding module that is part of the catalytic core
unit; Region: OBF_DNA_ligase_LigD; cd07971"
/db_xref="CDD:153440"
misc_feature order(226149..226151,226197..226202,226206..226223,
226377..226379,226383..226388,226404..226406)
/locus_tag="SMa0414"
/note="DNA binding site"
/db_xref="CDD:153440"
gene 226536..227393
/locus_tag="SMa0417"
