LOCUS NC_004704 37319 bp DNA circular CON 08-MAR-2017
DEFINITION Coxiella burnetii RSA 493 plasmid pQpH1, complete sequence.
ACCESSION NC_004704
VERSION NC_004704.2
DBLINK BioProject: PRJNA57631
BioSample: SAMN02603970
Assembly: GCF_000007765.2
KEYWORDS RefSeq.
SOURCE Coxiella burnetii RSA 493
ORGANISM Coxiella burnetii RSA 493
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales;
Coxiellaceae; Coxiella.
REFERENCE 1 (bases 1 to 37319)
AUTHORS Beare,P.A., Unsworth,N., Andoh,M., Voth,D.E., Omsland,A.,
Gilk,S.D., Williams,K.P., Sobral,B.W., Kupko,J.J. III,
Porcella,S.F., Samuel,J.E. and Heinzen,R.A.
TITLE Comparative genomics reveal extensive transposon-mediated genomic
plasticity and diversity among potential effector proteins within
the genus Coxiella
JOURNAL Infect. Immun. 77 (2), 642-656 (2009)
PUBMED 19047403
REFERENCE 2 (bases 1 to 37319)
AUTHORS Seshadri,R., Paulsen,I.T., Eisen,J.A., Read,T.D., Nelson,K.E.,
Nelson,W.C., Ward,N.L., Tettelin,H., Davidsen,T.M., Beanan,M.J.,
Deboy,R.T., Daugherty,S.C., Brinkac,L.M., Madupu,R., Dodson,R.J.,
Khouri,H.M., Lee,K.H., Carty,H.A., Scanlan,D., Heinzen,R.A.,
Thompson,H.A., Samuel,J.E., Fraser,C.M. and Heidelberg,J.F.
TITLE Complete genome sequence of the Q-fever pathogen Coxiella burnetii
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (9), 5455-5460 (2003)
PUBMED 12704232
REFERENCE 3 (bases 1 to 37319)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 37319)
AUTHORS Beare,P.A., Unsworth,N., Andoh,M., Voth,D.E., Omsland,A.,
Gilk,S.D., Williams,K., Sobral,B., Kupko,J.J. III, Porcella,S.J.,
Samuel,J.E. and Heinzen,R.A.
TITLE Direct Submission
JOURNAL Submitted (24-SEP-2008) Coxiella Pathogenesis Section, Laboratory
of Intracellular Parasites, Rocky Mountain Laboratories, National
Institute of Allergy and Infectious Diseases, 903 S. 4th Street,
Hamilton, MT 59840, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 37319)
AUTHORS Seshadri,R., Paulsen,I.T., Eisen,J.A., Read,T.D., Nelson,K.E.,
Nelson,W.C., Ward,N.L., Tettelin,H., Fraser,C.M., Davidsen,T.M.,
Beanan,M.J., DeBoy,R.T., Daugherty,S.C., Madupu,R., Dodson,R.J.,
Khouri,H.M., Lee,K., Carty,H.A., Scanlan,D., Heinzen,R.A.,
Thompson,H.A., Heidelberg,J.F. and Brinkac,L.M.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2005) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AE016829.
On Mar 8, 2017 this sequence version replaced NC_004704.1.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..37319
/organism="Coxiella burnetii RSA 493"
/mol_type="genomic DNA"
/strain="RSA 493"
/db_xref="taxon:227377"
/plasmid="pQpH1"
gene 79..537
/locus_tag="CBUA0001"
/db_xref="GeneID:1207831"
CDS 79..537
/locus_tag="CBUA0001"
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain containing protein"
/protein_id="NP_819020.1"
/db_xref="GeneID:1207831"
/translation="MKDSLITLKQLDQRLLALKEQGIHLTPKQGWVRTLRKALGLTIK
QLAKRLSVDPSRVVKIETSEVKGAVTLRTLQSVAEALNCTFVYSFVPKTSLEDTVRNQ
ARKVAKAQMERTAHTMELENQAIEKKWFEEQVEDLTDELLRKSWKHFWEE"
misc_feature 85..534
/locus_tag="CBUA0001"
/note="mobile mystery protein A; Region: mob_myst_A;
TIGR02612"
/db_xref="CDD:274231"
misc_feature order(175..177,187..189,262..264)
/locus_tag="CBUA0001"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(184..186,259..261)
/locus_tag="CBUA0001"
/note="salt bridge [active]"
/db_xref="CDD:238045"
misc_feature order(205..210,241..243,250..252,262..267)
/locus_tag="CBUA0001"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 668..1129
/gene="fic"
/locus_tag="CBUA0003"
/db_xref="GeneID:1207833"
CDS 668..1129
/gene="fic"
/locus_tag="CBUA0003"
/codon_start=1
/transl_table=11
/product="cell filamentation protein"
/protein_id="NP_819022.2"
/db_xref="GeneID:1207833"
/translation="MVSRQYFDLVEIATLDFVKKVHRRMFGKTWRWAGQFRTSNKNIG
VDWVGIPVELRVLVDDLRYQLKNKSYPLDELAVRFHHRLVAVHPFVNGNGRHARLMTD
ILLLSQGEKRFSWGRAEDLIVKSPVRKKYISALRAADKLDYAPLLTFVKER"
misc_feature <698..1120
/gene="fic"
/locus_tag="CBUA0003"
/note="Fic/DOC family; Region: Fic; cl00960"
/db_xref="CDD:445204"
gene complement(1211..1345)
/locus_tag="CBUA0003a"
/note="hypothetical protein; frameshifted ORF"
/pseudo
/db_xref="GeneID:31220962"
gene 1567..1680
/locus_tag="CBUA0003b"
/db_xref="GeneID:31220963"
CDS 1567..1680
/locus_tag="CBUA0003b"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351855.1"
/db_xref="GeneID:31220963"
/translation="MGGFWSTEEGKLLGPIREFMRYNAKKNQPILACIKNV"
gene 1722..2291
/locus_tag="CBUA0005"
/note="DNA integration/recombination/inversion protein;
C-terminally truncated ORF"
/pseudo
/db_xref="GeneID:1207835"
gene 2546..3571
/locus_tag="CBUA0006"
/db_xref="GeneID:1207836"
CDS 2546..3571
/locus_tag="CBUA0006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819024.1"
/db_xref="GeneID:1207836"
/translation="MRMFRESKSEEKKSPSSQTAGLFATVPSLKDIMIDRLIEQLGGI
AELNKQVVRDPRLWGAINERLTQHFLLLVVQGKQGQVEAMLKVNPALILFARGDVTDY
SGQTFKNISAWEYVLWAYDSHMYRMLFNYIPKEQRPLALQQLIDLETNGIAYTLSEKV
MNAEREAEETRETIIREAHYDFSPLIDALQTYVTNVERWSFEECVEHWRKKVGGAQCM
VPVHVGNEYCYPDRSFDPIPRFNEKNLPRRHNFYNYVSGADESWFPLSPAGLGTNFAI
MRGCMRAVAGACWRVGRQWACNDLAAITALREVRQSDLIQLKEQLQNPAPESAPSTSK
TLRSKNP"
gene complement(3769..4854)
/locus_tag="CBUA0007"
/db_xref="GeneID:1207837"
CDS complement(3769..4854)
/locus_tag="CBUA0007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819025.1"
/db_xref="GeneID:1207837"
/translation="MIRSYSSFRDRKKIKLTHTFLTSIGSLPDSVLNHSVGAFCDDNS
LAFLAHTSQHHYTLFRKNKTGQLRKRAVNQLLLHVVNGEQEEAEAMIANNHDLLLEID
QVPAYAQDTIVKETPFRVALAGEDDQMAAMIAAYLDEYYPGEKLEQYQAQFPAGEEKV
ENLRQEEDLIALQKIVTAISQASNNACEQMSNNEDNIAEDDEEMQRLAAVFYEFREHL
KPKNTIETGKQFNIQLLIEAFKLYDKNYEVFGGWNSHKNNLVWCKIIGYIQRFLPASY
AQALSQGVNFIIEEGEILQRSFNFRFGIGKFFPLDLDPQIRLGYDYAVAWPAVGGELL
EKLYRAKTAALHRVTHSPCNPAVNLRD"
gene 5070..5171
/locus_tag="CBUA0007a"
/db_xref="GeneID:31220964"
CDS 5070..5171
/locus_tag="CBUA0007a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351856.1"
/db_xref="GeneID:31220964"
/translation="MFCMINFQEKINLALIKLLFNKIFTARIKILYL"
gene 5308..6055
/locus_tag="CBUA0008"
/note="tail assembly protein; frameshifted ORF"
/pseudo
/db_xref="GeneID:1207838"
gene 6106..6333
/locus_tag="CBUA0008a"
/note="hypothetical protein; C-terminally truncated ORF"
/pseudo
/db_xref="GeneID:31220965"
gene 6326..11347
/locus_tag="CBUA0008b"
/note="rhs family protein; frameshifted ORF"
/pseudo
/db_xref="GeneID:1207839"
gene complement(11375..12628)
/locus_tag="CBUA0010"
/db_xref="GeneID:1207840"
CDS complement(11375..12628)
/locus_tag="CBUA0010"
/codon_start=1
/transl_table=11
/product="phage integrase family protein"
/protein_id="NP_819027.2"
/db_xref="GeneID:1207840"
/translation="MHEINELMEPLMKTVPLALFDSIENITAGNDYSYLKGIYDLDDI
KIATKFLKSYKGSQGTFNSYRREIERLIHWCALITNKSLKALKRDDIENFIYFCKKPP
KTWIGETKPPRFIIKDGVRIPNPKWRPFIVKLSKIERRKGMDLDKNNFELSHGSLRES
FAILSSFFNYLLQEEYVDVNPVALIRQKSQFIRKTQGQPKIRRLSELQWQYVIKSAKS
LAEQDPDIYERTLFIMSALYSMYLRISELAATERWEPRMNHFHRDGDGSWWFITVGKG
NKERQIAVSNAMLKALKRWRKHLGLTSLPSPADQSPLLPKNKGRGPIKSTNYIRNIVQ
YCFDRAIDQLDQDGFSEEAEALNEATVHWLRHTGISDDVKIRPREHVRDDAGHSSSAI
TDRYIDIELRERHQSARKKTISDED"
misc_feature complement(<11669..12481)
/locus_tag="CBUA0010"
/note="Site-specific recombinase XerC [Replication,
recombination and repair]; Region: XerC; COG4973"
/db_xref="CDD:227307"
misc_feature complement(11438..11992)
/locus_tag="CBUA0010"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain; Region: DNA_BRE_C; cd00397"
/db_xref="CDD:271175"
misc_feature complement(order(11441..11443,11543..11545,11639..11641,
11645..11647,11897..11902,11942..11944))
/locus_tag="CBUA0010"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:271175"
misc_feature complement(order(11441..11443,11468..11470,11534..11536,
11543..11545,11900..11902))
/locus_tag="CBUA0010"
/note="active site"
/db_xref="CDD:271175"
gene 12830..13000
/locus_tag="CBUA0011"
/db_xref="GeneID:1207841"
CDS 12830..13000
/locus_tag="CBUA0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819028.1"
/db_xref="GeneID:1207841"
/translation="MPLDSGAPLKVAQENAGHSDIGTTMLYRHVAQTDRFEATRLLSL
KKKVSSQNKDKV"
misc_feature <12836..12934
/locus_tag="CBUA0011"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain; Region: DNA_BRE_C; cl00213"
/db_xref="CDD:444754"
gene complement(13245..13760)
/locus_tag="CBUA0012"
/db_xref="GeneID:1207842"
CDS complement(13245..13760)
/locus_tag="CBUA0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819029.1"
/db_xref="GeneID:1207842"
/translation="MLQANLTFLGKTSVGPIMPRSYFGNAGAIQAPRIQKTATGEYTI
TFLTSRDIKETQPPAVHINFQDEVNGAFCSRLVKPVQFTYHPENSQFPWKILFQIAVQ
KGDGSYTDSNIVMITFAMANCNNQAVFNSCKNRVNAELNSCKPDDWECIADANTALQN
CYLQCEPDLII"
misc_feature complement(13335..13760)
/locus_tag="CBUA0012"
/note="Coxiella burnetii protein of unknown function
(DUF807); Region: DUF807; pfam05660"
/db_xref="CDD:283346"
gene 14418..15149
/locus_tag="CBUA0013"
/db_xref="GeneID:1207843"
CDS 14418..15149
/locus_tag="CBUA0013"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819030.1"
/db_xref="GeneID:1207843"
/translation="MPYFFTLPKIDIKEKSASQTPEKVLREWLRGASNQEDASLFIGN
SPIFGEHQDTSGSSLPKVEIPEFINSIKAVEAVFKKEGLKDEEILNYILHFGGINGYM
TLGQVVFEEISMNKGKSSRMENRRYSYRVKNKGEVEYIEQFDFYKKNTCDRNEIGDFI
GQVKIVSIISKDGDIQHACKKVEIAVPGEKLNSFRKHFGDQLNFVNRMKLRLVELYNS
LVERFRAAINKADRTNNNCFPFCSR"
misc_feature 14424..15140
/locus_tag="CBUA0013"
/note="Coxiella burnetii protein of unknown function
(DUF762); Region: DUF762; pfam05555"
/db_xref="CDD:283259"
gene complement(15181..15306)
/locus_tag="CBUA0013a"
/db_xref="GeneID:31220966"
CDS complement(15181..15306)
/locus_tag="CBUA0013a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351857.1"
/db_xref="GeneID:31220966"
/translation="MNILTSSTENNKIALTCRIQPEDLDRKHPNKLGEKFLFYKK"
gene 15536..15769
/locus_tag="CBUA0014"
/db_xref="GeneID:1207844"
CDS 15536..15769
/locus_tag="CBUA0014"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819031.1"
/db_xref="GeneID:1207844"
/translation="MRKSSAKTNEDVSPSERDHLSELNPDTLKKIIHNLSARDSYSLS
LSNKSLRNKVGAEFEHRAKTLNSDVKKLHLTIK"
gene 15979..16662
/locus_tag="CBUA0015"
/db_xref="GeneID:1207845"
CDS 15979..16662
/locus_tag="CBUA0015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819032.2"
/db_xref="GeneID:1207845"
/translation="MSDVNDYWYAKNEKGQIRPEFKNCTVEWKEDFVPPGRFNHCRLE
KVTFKNIAVSEEDDFFKGAELTDCSPSGATFANPSNFGVVKAKDLKSDLGKWFNEDDE
SEPWFEREVNKERKLYENNRKIHRFEEENKRLKSENQQLKDELKLLKARNSEKEAGAS
FGESSKKRSLLNEGLEEERTSEDFGPSTSSASTRLNLSIFSSPKRETDSETETEEEST
KTKNQIKLT"
misc_feature <16282..>16431
/locus_tag="CBUA0015"
/note="Possible nuclease of RNase H fold, RuvC/YqgF family
[General function prediction only]; Region: COG2433"
/db_xref="CDD:225288"
gene 16686..17711
/gene="cbhE"
/locus_tag="CBUA0016"
/db_xref="GeneID:1207846"
CDS 16686..17711
/gene="cbhE"
/locus_tag="CBUA0016"
/codon_start=1
/transl_table=11
/product="CbhE"
/protein_id="NP_819033.1"
/db_xref="GeneID:1207846"
/translation="MRLEQPRNSLKRSTLDLIERVNRDEYPSLPQDSKCKDALVSAFR
KTANFKKYNRPDVNSREQLISPSLTEEDLLGRIRQRYKEKIFAGGQEKFADQSFIAEQ
IASTYEDFKDNPTLPAYCGEMTYLLYYHLREEGIKPENMLVVGFSANAEDHVLLMYSS
DEGFLEQIKNDYFEQEEEGEEAESYKNFIELCARRDKNQTLLLLDPWSQDNKILDLNQ
LDRDESTNEVIEDYFKNKREALEEGFQPHAIIDGVLEESRVSKATGSVINMETLSFQV
DAFKPEELMEIDEENTSDSSEEGTSKNRFRDTLFSNVPDSSSDSENEQEREKKELAGK
TPSFRLC"
gene complement(17739..17945)
/locus_tag="CBUA0017"
/db_xref="GeneID:1207847"
CDS complement(17739..17945)
/locus_tag="CBUA0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819034.1"
/db_xref="GeneID:1207847"
/translation="MDFFYPFLYAFCALFQWCFIFLFLMRGINIPSFFRRLFIIFLKG
GVGASPEEPACSRDIFSPQFDYLS"
gene 17997..19614
/locus_tag="CBUA0018"
/note="hypothetical protein; frameshifted ORF"
/pseudo
/db_xref="GeneID:1207848"
gene complement(19736..20587)
/locus_tag="CBUA0020"
/db_xref="GeneID:1207850"
CDS complement(19736..20587)
/locus_tag="CBUA0020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819037.1"
/db_xref="GeneID:1207850"
/translation="MNDDEKKKLLEAYQNAVLIEPPKELPPIFVTPQTSDEPLQNLAI
TLSAFPIENRGGVQVFEVPKIADDCRSYVGRGYDAYEDTAAKGPQGPAWKPDSTWVKL
ESIEDFACRKGFEKVYVYEGHHYARQWGDGTILEKLGSTHWGATPVVRLIDPHALIVK
KYYGEVKEIWIRPYLHGSVPIPYLRAQSSYRRGPFGNYHLFKSVYKKEIVIQKMTKDD
WEPHYQWAKKEQQRQQQATAQFFKPQEEKQQESKKFINSFLVRLCEVLRIFISDENRE
PRKIDPS"
gene complement(20614..21690)
/locus_tag="CBUA0021"
/db_xref="GeneID:1207851"
CDS complement(20614..21690)
/locus_tag="CBUA0021"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819038.2"
/db_xref="GeneID:1207851"
/translation="MQDEVLKYMGIKVQDLVPPPNNPTVSSNSVAFFVVRLANFSNTI
LPVFLDHVAKGNQVEVEKTLEQYGALLLWQEGQAETYAKDLNGDPVIVRGTALQIALG
AEDEDMVEVIVGFLDAVDPGEKYRQYQAQFPAEEEKAESLRQQEDLEALQTIVTAIGH
ASPRACAQVLDHEENISDNDDEAKTLLAALNVFRNDVKPKGVIKTGKQFNIQLLIQAF
QFYDKNYETFGGFNSPKNNLCCCKIIGYLQRFVPACYAQAFAQGIYYIVEGGEGLRRS
FNFVLVMALIFRLTPFLIFVGDIIALGRDWDRGAAVRALGAHAGRRWRPSRRFLENYV
KQKQQQCKETCNNPATTPMPERTQ"
gene 22124..22435
/locus_tag="CBUA0022"
/db_xref="GeneID:1207852"
CDS 22124..22435
/locus_tag="CBUA0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819039.1"
/db_xref="GeneID:1207852"
/translation="MKNLKIIGKNPFCLQCAYGLTEKAKEQLQEDSPRQAAERFSREE
KEFEFDKCAYWYAYIKGYDKTAQWLKDQDPHIEDGKKEILRRILDSAVRSGDFETVDN
A"
gene complement(22568..23269)
/locus_tag="CBUA0023"
/db_xref="GeneID:1207853"
CDS complement(22568..23269)
/locus_tag="CBUA0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819040.1"
/db_xref="GeneID:1207853"
/translation="MKDYVKEIDFQSIKNSNCAIEETLQEWLRGANSVEKAHIFIVSP
ENQSFPICSNQVSSANLFKLKIHDIKSVIINQFKVFGLKSEPVINYILTYGGIDGYSS
VGEACLFKFDSLMGVEIQPRNHKKTYVIHSENTVNYIEAFNLISLKERRVIGHFSAVS
EIKLSENGEIIHVCKEANLKMFKVKSKSQVLVETIRKNLFEFLKSFYQRICSLFNEQK
NLRNRNTKMRGPGIG"
misc_feature complement(22574..23254)
/locus_tag="CBUA0023"
/note="Coxiella burnetii protein of unknown function
(DUF762); Region: DUF762; pfam05555"
/db_xref="CDD:283259"
gene complement(23548..23643)
/locus_tag="CBUA0023a"
/db_xref="GeneID:31220967"
CDS complement(23548..23643)
/locus_tag="CBUA0023a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351858.1"
/db_xref="GeneID:31220967"
/translation="MSFSCFAFPNLGSQYKKRFSIRKLQDMVKEI"
gene 23713..24156
/locus_tag="CBUA0024"
/db_xref="GeneID:1207854"
CDS 23713..24156
/locus_tag="CBUA0024"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819041.1"
/db_xref="GeneID:1207854"
/translation="MLAAHLIFSGQIPIGPIDPDSYFGNPGAIMDPEIEKIATGKYTI
TLLSARNVQNTQPAVVHISVMDDANETFCPRVTKALKFTYEPQNSDFPWKGMLEIAIT
EGDGTAIDPKQVMVSIHAQNESVGADVTVGPTRAKAKVKVDVPHP"
misc_feature 23713..24138
/locus_tag="CBUA0024"
/note="Coxiella burnetii protein of unknown function
(DUF807); Region: DUF807; pfam05660"
/db_xref="CDD:283346"
gene complement(24282..24542)
/locus_tag="CBUA0025"
/db_xref="GeneID:1207855"
CDS complement(24282..24542)
/locus_tag="CBUA0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819042.1"
/db_xref="GeneID:1207855"
/translation="MNKPNDGVKFFMTDEEAALAILKKTNFFAQVVKNQKIGASTVDS
LQWLRVECEKKCENLVNENRLSEKTKEGHTVYKELQRGKNFK"
gene 24901..25131
/locus_tag="CBUA0026"
/db_xref="GeneID:1207856"
CDS 24901..25131
/locus_tag="CBUA0026"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819043.1"
/db_xref="GeneID:1207856"
/translation="MIVYRSLVLTSEIPVCLKLKPVIPAPSSSPRRRGPSALRAQRAK
SAPGLPMNYCVIMLKKMTAHSPMPQAKSLLLI"
gene 25191..25316
/locus_tag="CBUA0026a"
/note="hypothetical protein; N-terminally truncated ORF"
/pseudo
/db_xref="GeneID:31220968"
gene complement(25379..25723)
/locus_tag="CBUA0027"
/db_xref="GeneID:1207857"
CDS complement(25379..25723)
/locus_tag="CBUA0027"
/codon_start=1
/transl_table=11
/product="putative DNA-binding protein"
/protein_id="NP_819044.2"
/db_xref="GeneID:1207857"
/translation="MMKDKKKKSKTRFKPLSPIEAVHESAKGLYDAGVIDATTMHEFD
ALCLTPVRELSPREIKRIRIHEKVSQAVFAKYLNTSVSTVKQWELGEKHPRGTSLKLL
NLVDRKGLQAIA"
misc_feature complement(25382..25666)
/locus_tag="CBUA0027"
/note="DNA-binding transcriptional regulator YiaG,
XRE-type HTH domain [Transcription]; Region: YiaG;
COG2944"
/db_xref="CDD:225495"
gene complement(25720..26175)
/locus_tag="CBUA0028"
/db_xref="GeneID:1207858"
CDS complement(25720..26175)
/locus_tag="CBUA0028"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819045.2"
/db_xref="GeneID:1207858"
/translation="MTDGNLLEIGNEYRLTNSSLSDIVLTIREVMRIFKTRYFHRWAK
SENLSDSQLKTAISELMKGLHDGDLGSYIYKKRIPILGKGKRGGLRTIIAYRAEDKAF
FVYGYAKNVQANITPKEKEAYKKLSKTYFDMKELELQSLLKIGELIEVL"
misc_feature complement(25726..26085)
/locus_tag="CBUA0028"
/note="RelE toxin of RelE / RelB toxin-antitoxin system;
Region: RelE; pfam06296"
/db_xref="CDD:399359"
gene complement(26172..26405)
/locus_tag="CBUA0029"
/note="hypothetical protein; N-terminally truncated ORF"
/pseudo
/db_xref="GeneID:1207859"
gene complement(26583..28172)
/locus_tag="CBUA0029a"
/note="hypothetical protein; frameshifted ORF"
/pseudo
/db_xref="GeneID:31220969"
gene 28244..28864
/locus_tag="CBUA0031"
/db_xref="GeneID:1207861"
CDS 28244..28864
/locus_tag="CBUA0031"
/codon_start=1
/transl_table=11
/product="hypothetical membrane spanning protein"
/protein_id="NP_819047.1"
/db_xref="GeneID:1207861"
/translation="MSIFGFHIAMSGLLFPFSFILLIVITETYGYRETGRAILIILLS
QNILLILLSITARLPSPPNIPLSHEYYSLFSGVWRILISGNIAIPIAFFFNSLLNLKL
KVYLKGTKWVVRFLLTNALSKGLLVFISYPINFFGVLPIKTVLHICLDTWLFKIVFCI
LTVWLIRLISEISSKVDSTDIYDINTNYSLLQLYSPKNSGMNLYGR"
misc_feature 28271..28750
/locus_tag="CBUA0031"
/note="Putative vitamin uptake transporter; Region: Vut_1;
pfam02592"
/db_xref="CDD:426858"
gene 28854..29600
/locus_tag="CBUA0032"
/db_xref="GeneID:1207862"
CDS 28854..29600
/locus_tag="CBUA0032"
/EC_number="3.1.4.17"
/codon_start=1
/transl_table=11
/product="3',5'-cyclic-nucleotide phosphodiesterase"
/protein_id="NP_819048.1"
/db_xref="GeneID:1207862"
/translation="MEDNCIKIAQVSDLHLTSENCETSRGRYSNAMNVFSAISLSGQH
DMIFITGDISDDYTENSYKQLLEMLKKLTCRVFVIPGNHDDVNLMNKIIPEKYLFSPE
TVTSFNTFDFLFVNTVVNGEIHGLLTDQDLSLFQNHLENSGNKKKCIIMHHNPIPLNR
KIYDKYMLLNYQDFLRIICLYDNVKLVIFGHVHNDYTISYRQTLFSSAPATCYQIKKF
ESDIIIEEKYGYKNYFLFEEFIETNCIWIK"
misc_feature 28875..29573
/locus_tag="CBUA0032"
/note="Enterobacter aerogenes GpdQ and related proteins,
metallophosphatase domain; Region: MPP_GpdQ; cd07402"
/db_xref="CDD:277347"
misc_feature order(28890..28892,28896..28898,29007..29009,29016..29018,
29097..29102,29307..29309,29424..29426,29430..29432,
29490..29492)
/locus_tag="CBUA0032"
/note="active site"
/db_xref="CDD:277347"
misc_feature order(28890..28892,28896..28898,29007..29009,29097..29099,
29307..29309,29424..29426,29430..29432)
/locus_tag="CBUA0032"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:277347"
misc_feature order(28920..28922,28929..28931,28938..28943,28950..28955,
29016..29018,29025..29027,29052..29054,29319..29321,
29325..29330,29409..29411,29415..29417,29436..29450,
29457..29465,29469..29471,29553..29555,29562..29564,
29568..29570)
/locus_tag="CBUA0032"
/note="homohexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:277347"
gene 29790..30143
/locus_tag="CBUA0033"
/db_xref="GeneID:1207863"
CDS 29790..30143
/locus_tag="CBUA0033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819049.1"
/db_xref="GeneID:1207863"
/translation="MNPKDLLYLKGFFDDFNKNKQRIKLVAEYRNNEYGIACDQFEIR
KIPGSSLCADLNLLGNMSIESAFVIIYKTAYLKGVADSKKSQFLEQKQQCYGKDTPTR
LLRLVNNNVEGGKDN"
gene complement(30413..30619)
/locus_tag="CBUA0034"
/db_xref="GeneID:1207864"
CDS complement(30413..30619)
/locus_tag="CBUA0034"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_819050.1"
/db_xref="GeneID:1207864"
/translation="MGAYFRQKNWIFKKKTLKYKNRSTFLYINLFEAEAVGIWMSIKL
NIQFTRSFTERLQSTNTNPLMIKC"
gene complement(30688..31307)
/locus_tag="CBUA0034a"
/note="putative acetyltransferase/acyltransferase;
frameshifted ORF"
/pseudo
/db_xref="GeneID:31220970"
gene complement(31549..32472)
/gene="parB.1"
/locus_tag="CBUA0036"
/db_xref="GeneID:1207866"
CDS complement(31549..32472)
/gene="parB.1"
/locus_tag="CBUA0036"
/codon_start=1
/transl_table=11
/product="chromosome partitioning protein"
/protein_id="NP_819051.2"
/db_xref="GeneID:1207866"
/translation="MEETFAVRDNVNVLKGKIMADIELKGLKGLRDLKSLANASKTND
FVAQNLYFLSIDLLQTGKYQPRKGWIKESLQELVNSIKSQGIIQPLIVRQIQTNRYEI
IAGERRWRAAKEAGLKKVPAIIRNVDDTTALAFALIENIQRENLNPIDEALAFSRLRD
EFSMSHAAISETVGRSRTAVTNILRLLSLDDSVKVLLQTDKLEMGHARALLTLPKDQQ
ILFAQKIIDKNLTVREAEKLVQFAKTPKETKPAPYADEVQGWVNQLSRSLSSKIAINI
NEKGEGKVIIHFTSPEEVDWLVEHFTDKAEE"
misc_feature complement(31795..32337)
/gene="parB.1"
/locus_tag="CBUA0036"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:272946"
gene 32611..32742
/locus_tag="CBUA0036a"
/db_xref="GeneID:31220971"
CDS 32611..32742
/locus_tag="CBUA0036a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351859.1"
/db_xref="GeneID:31220971"
/translation="MKIKQLINCKQQKLIKKIKTRCVSFVNRNFIKKLHFHKKPDIF"
gene 32782..34002
/locus_tag="CBUA0037"
/db_xref="GeneID:1207867"
CDS 32782..34002
/locus_tag="CBUA0037"
/codon_start=1
/transl_table=11
/product="plasmid partition protein A"
/protein_id="NP_819052.1"
/db_xref="GeneID:1207867"
/translation="MLETQITPYGTETPEQLMDKFYQAGNEMLLTLRNYITSPDKRKK
SRTWGAIEAAKMVGVSAPTFRKLLESDNEVPGIIIEENENGRKIKKYTLTAINNLREK
AKTRYKRPKGSKPLTIAISNLKGGVGKTETAVDLGKKIAIEGLRSLLLDFDAQGTATL
ISSGLIPDLELRYEDTITNTLISDPNNIKNIVLKTHFDGFDIIPANLAIQDCDLILPN
DKENNNDRLGSPFLRLAESLKIIKNQYDVILIDCGPNLGLLTLNAIIACDGMIIPIPP
SMNDYSSFIMYTATLRNMFRELSNKKLDYLRILLSKHNSSNEALQMENMMREQFGRYI
LSNHMCETVEVSKAANEIGTIYDVSKPRGSREAYRRALQHLDDVNMEIINNFKDIWKS
QVKVLTTLGETVNG"
misc_feature 32860..33951
/locus_tag="CBUA0037"
/note="plasmid partitioning protein RepA; Region:
partition_RepA; TIGR03453"
/db_xref="CDD:274585"
gene 33995..34999
/gene="parB.2"
/locus_tag="CBUA0038"
/db_xref="GeneID:1207868"
CDS 33995..34999
/gene="parB.2"
/locus_tag="CBUA0038"
/codon_start=1
/transl_table=11
/product="DNA-binding protein"
/protein_id="NP_819053.1"
/db_xref="GeneID:1207868"
/translation="MDNSKRNIHNSGPLGMLMKNGQIKKIENSAESNEGTVVLNKAAP
SYFKTQAGIEFTEHELIFVDPKECEPWEYANRQDEELGNINELIESIKSNKQLQPALI
RKHPHPHDDVKYEIIFGRRRHIACLNLGIPFLAILKEIPNVQDAIAFQDAENKLRNDV
SNYSNAILYKRLIEEGVFKKEKDLAEKLRLSPSTLNDLMAYTKIPSAIVKKIPNIHAL
SKSIVLKIVQLLNKSSKNHAKLIAIAPDIGKSITSPAKLESAVEKPVGSKTKQRLQAT
KQYKTKDGKKLFTFKIDHRGAPCIVLNKEILNRVDMDTMCEKIKSQLEIELSQSGAPD
"
misc_feature 34160..34729
/gene="parB.2"
/locus_tag="CBUA0038"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:272946"
gene 34996..36345
/locus_tag="CBUA0039"
/db_xref="GeneID:1207869"
CDS 34996..36345
/locus_tag="CBUA0039"
/codon_start=1
/transl_table=11
/product="plasmid replication initiation protein"
/protein_id="NP_819054.2"
/db_xref="GeneID:1207869"
/translation="MTPNPELPDWSLSQILMEKRMNLAVATDKRVELKKHVNAIHCSN
NLTLVQRKLFNALLFNAYPELPYKLKFQISAKDLCKLIGYNSNDYGKLKRALLGLITT
AIEWNVIDCDTGKEKNWKASSILSAAQLAEGVCTYEYSHIMKELLFQPEIYGRIDVKT
MSKFKSSYGLALYENCIRYQRLSQTPWFPLDVFRKLMGVLGGKYTSFKDFKKRVLNIA
VNEVNNLSQIQVLPEIERQNQKVTKIRFKLNKKHLASSEKISNLINAELEETLTNTFS
LSPLLIRDLLTEYDIAFIREKVNIIINSSSFQEGKIRGLSGYLIDSLRKDYKASKSSQ
MLISEARMKRKLEEEAEKEREERRRNRYEKYVKDKINKYLTLLTDAEKDALVMDFEVE
LKSNKSNKVFYSWYKKNGFEHVGVKACFHNFVKEHKKQHMGGILSFEEFISLVDEYT"
misc_feature 35080..35736
/locus_tag="CBUA0039"
/note="Initiator Replication protein; Region: Rep_3;
pfam01051"
/db_xref="CDD:426016"
gene complement(36436..36993)
/locus_tag="CBUA0039a"
/db_xref="GeneID:31220972"
CDS complement(36436..36993)
/locus_tag="CBUA0039a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_009351860.1"
/db_xref="GeneID:31220972"
/translation="MDKIKSIPTRHKPNAQKKYRRSQANKGLVRFELQVRADAKKRFE
AMVQAAAEEYPEPWNERQRMAKARARIFEEITQGTLHEFFTLKEEIERLKEEVKTLSP
QFFQSENIAPTPLPEAIRSLPDNPQQLKAILAKIYQTGLQAQLAVKEYKRRAEQYLKL
YEAASNSNEELKSRLKKEQDVTFED"
CONTIG join(AE016829.2:1..37319)
//
