LOCUS NC_007958 4892717 bp DNA circular BCT 22-DEC-2012
DEFINITION Rhodopseudomonas palustris BisB5 chromosome, complete genome.
ACCESSION NC_007958
VERSION NC_007958.1 GI:91974482
DBLINK Project: 58441
BioProject: PRJNA58441
KEYWORDS .
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Oda,Y., Larimer,F.W., Chain,P.S., Malfatti,S., Shin,M.V.,
Vergez,L.M., Hauser,L., Land,M.L., Braatsch,S., Beatty,J.T.,
Pelletier,D.A., Schaefer,A.L. and Harwood,C.S.
TITLE Multiple genome sequences reveal adaptations of a phototrophic
bacterium to sediment microenvironments
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18543-18548 (2008)
PUBMED 19020098
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4892717)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000283.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4892717
/organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
gene 649..2067
/gene="dnaA"
/locus_tag="RPD_0001"
/db_xref="GeneID:4020455"
CDS 649..2067
/gene="dnaA"
/locus_tag="RPD_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_567142.1"
/db_xref="GI:91974483"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4020455"
/translation="MSNMEHDRWSRVKGRLRSSVGEDVYSSWFARMDLEAVQQESVHL
SVPTRFLKSWIQTHYSEKVLTCWQAEMPEVCRIDLTVRSPMRAAVTKEAPAPAEHRRD
EHRPAADARSHAAAPAPSNHDALGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAEGRR
GDPVMFNPLYIHSGVGLGKTHLLQAVTWAGNSGTERKVLYLTAEKFMYGFVASLKTQT
SLAFKEALRGIDVLVIDDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLES
LDERVRSRLAGGLVVEMAPLGEELRLGILKSRVVAARTHHASFDVPQSVLEYLARAIT
HNGRDLEGAINRLLAHSKLNAQPVTLEMAEHEVRDLIRPQEPKRIKIEDIQRVVARQY
NVSRSDLLSSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIE
GLVSKDVTLSDEVESLKRQLQE"
misc_feature 658..2064
/gene="dnaA"
/locus_tag="RPD_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 673..855
/gene="dnaA"
/locus_tag="RPD_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 1081..1503
/gene="dnaA"
/locus_tag="RPD_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 1165..1188
/gene="dnaA"
/locus_tag="RPD_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(1168..1191,1351..1353,1450..1452)
/gene="dnaA"
/locus_tag="RPD_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1339..1356
/gene="dnaA"
/locus_tag="RPD_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 1498..1500
/gene="dnaA"
/locus_tag="RPD_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1789..2058
/gene="dnaA"
/locus_tag="RPD_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1858..1860,1882..1887,1906..1908,1924..1932,
1957..1971,1978..1980,1987..1992)
/gene="dnaA"
/locus_tag="RPD_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 2329..3447
/locus_tag="RPD_0002"
/db_xref="GeneID:4020456"
CDS 2329..3447
/locus_tag="RPD_0002"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_567143.1"
/db_xref="GI:91974484"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4020456"
/translation="MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLAL
KATDLDLEVIETLPAETATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRA
GRSRFTLQTLPESDFPDLAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIY
LHTAGSAKAATLRAVATDGHRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDA
EIAIELSAGKIRFTIGNVVLTSKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRV
STISSERGRAVKLALSAGKLVLSVTNPDSGSATEELEVEYASDALDIGFNSRYLLDIA
AQIEGEVAVLKLADPGSPTLIQDRDTKNALYVLMPMRV"
misc_feature 2329..3444
/locus_tag="RPD_0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 2329..3441
/locus_tag="RPD_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(2398..2400,2542..2544,2563..2565,2938..2940)
/locus_tag="RPD_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(2545..2547,2554..2556,2638..2640,2644..2646,
3160..3162,3253..3258)
/locus_tag="RPD_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2857..2859,2863..2874,3304..3306,3430..3441)
/locus_tag="RPD_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2857..2859,2863..2868,3085..3087,3190..3192,
3229..3234,3313..3315,3430..3441)
/locus_tag="RPD_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 3622..4758
/gene="recF"
/locus_tag="RPD_0003"
/db_xref="GeneID:4020457"
CDS 3622..4758
/gene="recF"
/locus_tag="RPD_0003"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_567144.1"
/db_xref="GI:91974485"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:4020457"
/translation="MTASRITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLE
AISFLSPGRGLRRATLDDVSDHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTR
RCRIDREPVGSATAFGDHLRMVWLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRV
SALDRSLRSRNRLLEERNADRHWLDAIERETAELAVAVAAMRGQTAARLAAMLDARGA
ASAFPSAKIMLDGWMESALLTEPATAVEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQ
VIYAPKAMPARDASTGEQKALLIGLVLAHAQLVSEITGITPLLLLDEVVAHLDPARRR
ALFAELERLGAQVWMTGADPAGFAEIGPDAEIFTVESGRIAPQK"
misc_feature 3634..4749
/gene="recF"
/locus_tag="RPD_0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 3637..>4104
/gene="recF"
/locus_tag="RPD_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3718..3741
/gene="recF"
/locus_tag="RPD_0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(3727..3732,3736..3744,4003..4005)
/gene="recF"
/locus_tag="RPD_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 3994..4005
/gene="recF"
/locus_tag="RPD_0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <4420..4746
/gene="recF"
/locus_tag="RPD_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 4486..4515
/gene="recF"
/locus_tag="RPD_0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 4573..4590
/gene="recF"
/locus_tag="RPD_0003"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 4597..4608
/gene="recF"
/locus_tag="RPD_0003"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 4666..4686
/gene="recF"
/locus_tag="RPD_0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 4985..7426
/gene="gyrB"
/locus_tag="RPD_0004"
/db_xref="GeneID:4020458"
CDS 4985..7426
/gene="gyrB"
/locus_tag="RPD_0004"
/EC_number="5.99.1.3"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_567145.1"
/db_xref="GI:91974486"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="GeneID:4020458"
/translation="MTEPARQPIAETPPSVPAEYGAESIRVLKGLDAVRKRPGMYIGD
TDDGSGLHHMVYEVVDNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIHKGEG
ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRVWRNGKEHIIEF
AHGDAVAPLSMVGDANGRRGTEVTFFASPETFTHIEYDFATLEHRLRELAFLNSGVNI
VLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPAPIVLAADLNGIGVEVALWWN
ETYHENVLCFTNNIPQRDGGTHLAGFRAALTRQVNGYADSNAKKEKIALTGDDCREGL
TAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKVIVGKVIE
AAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQG
RNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGRDDFDLSKLRYHKI
ILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERA
LEDYLISTGLDDCIFRPASGEERSGRDLLALVENARIVRGTLHNLHSRYNRSVVEQAA
IAGVLNPRITSDIPTANEAAAYIARRLDALADEVERGWVGRFTEGEGFSFERTVRGVK
DVAIIDDALLGSADARKLDEYAAILQEAYPRPGVLRRKDTETAIHGPVSLFEAVTDAG
RKGVSLQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDLFTKLMGDVVEPR
REFIQENSLSATVDV"
misc_feature 5024..7423
/gene="gyrB"
/locus_tag="RPD_0004"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 5135..>5281
/gene="gyrB"
/locus_tag="RPD_0004"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 5165..5167
/gene="gyrB"
/locus_tag="RPD_0004"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(5252..5254,5258..5260)
/gene="gyrB"
/locus_tag="RPD_0004"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 5693..6157
/gene="gyrB"
/locus_tag="RPD_0004"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 5846..5848
/gene="gyrB"
/locus_tag="RPD_0004"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(6014..6016,6023..6028,6032..6034)
/gene="gyrB"
/locus_tag="RPD_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(6032..6034,6038..6040)
/gene="gyrB"
/locus_tag="RPD_0004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 6281..6625
/gene="gyrB"
/locus_tag="RPD_0004"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(6299..6304,6311..6313,6521..6523,6527..6529,
6533..6535)
/gene="gyrB"
/locus_tag="RPD_0004"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(6299..6301,6521..6523)
/gene="gyrB"
/locus_tag="RPD_0004"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 7202..7393
/gene="gyrB"
/locus_tag="RPD_0004"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(7691..8461)
/locus_tag="RPD_0005"
/db_xref="GeneID:4020459"
CDS complement(7691..8461)
/locus_tag="RPD_0005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567146.1"
/db_xref="GI:91974487"
/db_xref="GeneID:4020459"
/translation="MDSPGKQIHGGAMESDRLWAAASRLADYVKSPSLRHIRDPQNIQ
KLAREILQAVDQAGSVWSKWTAAREDIVKAAANCWVPPEDLRAFLNSLPGPALTATDV
AQRLRAIWEEPWTSYPKEELQAGCRALYDAEKAAGTEMRAIIGALEEFLEVEEERLRQ
EQNEAYQQFREQDRIRRQQRFLSGADCGWTPIDGSKELFCRRNGRAFRVGQAKDKRWK
LYRIAAVDDAGELLGTYAGRREASKALEQIAYQAEILR"
gene complement(8475..8738)
/locus_tag="RPD_0006"
/db_xref="GeneID:4020460"
CDS complement(8475..8738)
/locus_tag="RPD_0006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567147.1"
/db_xref="GI:91974488"
/db_xref="GeneID:4020460"
/translation="MRYVAILAIVAVVPGPSAAQEPKPLKTLRIQQAAPGATELFVVD
DDGTVRIDWEKVETLARLKTDRIALPTAQVMLAIRDRTWKPMK"
gene complement(8751..9092)
/locus_tag="RPD_0007"
/db_xref="GeneID:4020461"
CDS complement(8751..9092)
/locus_tag="RPD_0007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567148.1"
/db_xref="GI:91974489"
/db_xref="GeneID:4020461"
/translation="MIRTVAALIVLLLNAEVRSETVDVKYRGPVDLRTFECRDITRSS
FIQRVCYDQAQAYMIISLKGTYYHYCELSRATFDSLMGAPSMGQFFNQTIKGTGSDGP
FDCRTHRTPSY"
misc_feature complement(8805..8972)
/locus_tag="RPD_0007"
/note="KTSC domain; Region: KTSC; pfam13619"
/db_xref="CDD:205797"
gene complement(9267..10505)
/locus_tag="RPD_0008"
/db_xref="GeneID:4020462"
CDS complement(9267..10505)
/locus_tag="RPD_0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567149.1"
/db_xref="GI:91974490"
/db_xref="InterPro:IPR007421"
/db_xref="GeneID:4020462"
/translation="MFVREIGAWRLVGGETDRIECKAGFRLQPEDRFSKALRAIAGLA
NNKGGYILFGVTDGTYQADGLSDDVFTKSDISLLNRILASALDPVPHVTKGLIELGGK
QVGVLYVEKHDHGPVIAVKNVSQDVKEGGIYFRYVGETRLIKPGELRQIIAAREQRAV
AEFSARMNRVAVGKEATIDLDSGEVAGTSGKFLIDKSLLSSIQFVREGEFDEKKGAPA
LRLIGDVEPVSAVERERTRVIRENVTPDAVVRNFLRNEKVAEPTQYIHFQAHSQRKWF
PVWFYIDQTRSTASEVAEDLRKQVATYPSSRDALVDRLAGKDAAFRQSTGKAEALRAK
LARGDIKAPTDIDADVVFAGAVQALPTTMKPKDLESIRTALLDCLDRAQDTDPRSSNR
RGAIYRAACRLDELLYSKKR"
misc_feature complement(<9552..10466)
/locus_tag="RPD_0008"
/note="Predicted transcriptional regulator containing an
HTH domain and an uncharacterized domain shared with the
mammalian protein Schlafen [Transcription]; Region:
COG2865"
/db_xref="CDD:32692"
misc_feature complement(10074..10463)
/locus_tag="RPD_0008"
/note="Divergent AAA domain; Region: AAA_4; pfam04326"
/db_xref="CDD:202973"
gene 10961..11476
/locus_tag="RPD_0009"
/db_xref="GeneID:4020463"
CDS 10961..11476
/locus_tag="RPD_0009"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567150.1"
/db_xref="GI:91974491"
/db_xref="GeneID:4020463"
/translation="MLSGSYIWRHLPSAAQRALMATMAPKHHPTPLSGGDRKALQKEL
GKSRAMTGILARQAEEARSEGEALIRKADNLACQSWNERMWSDGGPAQPSPTIGQAIN
GGYPWLEVQCSRCKTISSVDLCEIKRPPETFVHTLEEALRCRKCSRSKWRPRGVLHQL
APNQRHTPPET"
gene 11481..12173
/locus_tag="RPD_0010"
/db_xref="GeneID:4020464"
CDS 11481..12173
/locus_tag="RPD_0010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567151.1"
/db_xref="GI:91974492"
/db_xref="InterPro:IPR003738"
/db_xref="GeneID:4020464"
/translation="MCNLYSITKNQDAIRQIFRIARDTTGNLPPLPAIFPDGLAPIVR
AAGERELTMMRWGMPGPPQFGGIPVTNIRNTKSPHWRRWLKPENRCLVPATSFSEYNA
TANPKSLTYPDGSPHPMAGKKDVVWFALSPERPLFAFAGIWTEWTGTRGTKANPVEGA
HLLYGFLTTEPNAIVAPIHPKAMPVILTTEEERDVWMRAPWGEAAALQRPLPDGPLQI
VARGANKEDRST"
misc_feature 11493..12107
/locus_tag="RPD_0010"
/note="Uncharacterized ACR, COG2135; Region: DUF159;
pfam02586"
/db_xref="CDD:202296"
gene complement(12201..13025)
/locus_tag="RPD_0011"
/db_xref="GeneID:4020465"
CDS complement(12201..13025)
/locus_tag="RPD_0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567152.1"
/db_xref="GI:91974493"
/db_xref="GeneID:4020465"
/translation="MKATFIGFDSAWTDNPKRPGAICSIDYDGSEFSEFRGPTLVGFK
QALEFIQSAYDANRLTLVAVDQPTIVNNLTGMRAAERVAAAAVSWLGGGVQPASRSRS
GMFDDNAPIWKFLRELGACDDPERCKASRDGLFIMEVFPALALPAFHPGFCGRLSAPR
YNPARSKTFRQSDWEKVTKVVGEQVDAMQCPSFNDWCASLSSVPKPKKSDQDKLDASI
CLLIALHWMVQPRESSVMIGDLTSGYIVAPVVDEIRRRLTDKARSEYVAIDGKIPG"
misc_feature complement(12222..13013)
/locus_tag="RPD_0011"
/note="Protein of unknown function (DUF429); Region:
DUF429; cl12046"
/db_xref="CDD:159706"
gene complement(13025..15799)
/locus_tag="RPD_0012"
/db_xref="GeneID:4020466"
CDS complement(13025..15799)
/locus_tag="RPD_0012"
/codon_start=1
/transl_table=11
/product="helicase-like protein"
/protein_id="YP_567153.1"
/db_xref="GI:91974494"
/db_xref="InterPro:IPR000330"
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002464"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4020466"
/translation="MDVKPLGRSTGLVGGGNLQRFSSRLGRLSHVYLKDQLRGASEYR
RIAGYFRSSIFDLVNEEIEGIGKVRIVCNSDLDPEDINAAKQARTQLLKEKWNEVDDA
VESFFRRPRYQRLFDILTKGNVEIRVVSRADAPFVHGKAGVIYRPDGTSSAFMGSLNE
TREGWSANYEFVWEDTSADGVAWVEDEFEYLWERGKPLPDAIIEEIGRSARRVEVQLA
DLTPAEVAPAALVEADIYRKGEELMPWQRAFVSLFLEHRETYGQVRLLLADEVGVGKT
LSLAGSALVSALLGDGPVLILCPATLTAQWQIELKDRLNIPSAVWLSQEKAWLLDPDE
IPMPSVGPEGVVKCPRQIALVSTGLIFHKTEERELLMSRRYGMVILDEAHRARGKTES
DEEERKANNLLSFMTEIAKKTTHVLLGTATPIQTDVEDMWDLLKILGMGAEHVIGDAW
SEWRSTEKVVPVITGKRKVTDDRDAWSLFRNPLPASAENEVIFGLMRGAIEMPPTRYV
TQKGFSDINDDFCREQFIDDVLTPKGDLGFFQRNNPVVRHVVLRKRSTLEQMNLLPRI
PVDIHPLPGQHMPALFDGLGLRTSSAFDAAYEAADKFTKVLRKRKKSAGFMRSLMLQR
LCSSYASGLSTAEKLLAGRSLDDEELMLDLGPNGVELIDEERLHLQTIIDVLSPHPTD
PKLDAVLYFLEDKGWLEKGCIIFSQYFDTTRWIGETLTGRLPREPVAVYAGAGKSGIY
IGGEWKSVEREQIKKAVKERTIRLVVATDAACEGLNLQTLGTLINVDLPWNPSRLEQR
IGRIKRFGQRRERVDMLNLVYHGSQQLTVDEKVYQKLSSRMKDRFDIFGTLPDVIDDD
WIDDEEEFDARLNDFTEKRKRANAFDLRYASDVDPKGERWELCEKVLARADVTKRLSR
GWGERERADG"
misc_feature complement(15221..15745)
/locus_tag="RPD_0012"
/note="N-terminal putative catalytic domain of
uncharacterized prokaryotic and archeal HKD family
nucleases fused to a DEAD/DEAH box helicase domain;
Region: PLDc_N_DEXD_a; cd09179"
/db_xref="CDD:197276"
misc_feature complement(15224..15703)
/locus_tag="RPD_0012"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:205272"
misc_feature complement(order(15290..15292,15323..15325,15329..15331,
15380..15382,15386..15388))
/locus_tag="RPD_0012"
/note="putative active site [active]"
/db_xref="CDD:197276"
misc_feature complement(15386..15388)
/locus_tag="RPD_0012"
/note="catalytic site [active]"
/db_xref="CDD:197276"
misc_feature complement(14531..15007)
/locus_tag="RPD_0012"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(14972..14986)
/locus_tag="RPD_0012"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(14648..14659)
/locus_tag="RPD_0012"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(13370..13783)
/locus_tag="RPD_0012"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(<13382..>13777)
/locus_tag="RPD_0012"
/note="Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis]; Region:
SrmB; COG0513"
/db_xref="CDD:30859"
misc_feature complement(order(13490..13498,13571..13576,13670..13681))
/locus_tag="RPD_0012"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(13388..13390,13397..13399,13409..13411,
13472..13474))
/locus_tag="RPD_0012"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(15807..18746)
/locus_tag="RPD_0013"
/db_xref="GeneID:4020467"
CDS complement(15807..18746)
/locus_tag="RPD_0013"
/codon_start=1
/transl_table=11
/product="DNA methylase containing a Zn-ribbon"
/protein_id="YP_567154.1"
/db_xref="GI:91974495"
/db_xref="GeneID:4020467"
/translation="MDAKVMKSKVVPFSLKDAPSLIERVWPAQMISVEAQRERKAVHG
QTLTSLGSYWKGRKPLVLVRACILGALLPSTGDDEKDLAIFEKLMGMSDDQVACRFKE
KVSVEEVQKFGTVSQQSALIDDDGQGTTLRKLPKAQRESLMGSVIQRMPYDVRAQKLL
RPEEVDESVLTGPALDEVNKHLGTDASNLSELLEQLGLMRFGRRPVVVDTFSGSGSIP
FEAARLGCDVFASDLNPIACMLTWAALNVVGGSDASRKEIQQEQAALAKAVDEEITRL
GIEHDSHGNRAKVFLYCLEARCPQTQWLVPLAPTFVVSEARRVVARLVPNKSKKQFDL
EIVSGANAKEMAEAAAGTVRDGKMVYSLDGETYSTPIKTIRGDRREAGGIAANNLRLW
EKSDVAPRSGDILSERLYCIQWIEQETVGKSRQVTFFASPTAADLKRELKVKNLVSHK
LKEWQEGGFVSDMEIETGKENEGPIRTNGWKFWHQMFMPRAILTAALIAEHGQGRAHA
ALSLCKYLDNNSKSCRWKVSQSGGDGGAVSTFDSQALKTIFNWAFRALNVAPWQLGEF
ARSPIRTNATIECVDARNFRHSMDLSITDPPYADAVNYHEITEFFIAWIRKNTPTEFE
EWTWDSRRPLAIKGDGEDFRHGMVDAYKAMSEKMAPNGLEIVMFTHQSASVWADMAQI
FWGAGLQVMAAWYIATETTSDLKKGGYVQGTVILVARKRREREAGYKDEIVQEVKAEV
ADQIDTMSGLSQNLKGRGRIENLFEDADLQMAGYAAALRVLTKYERIDGTDMTKEALR
PRRAGEKNIVGEIIDFAVQVANEHMVPEHMPPKLWGDLSGAERFYFKMLDIETTSLRK
LDNYQNFAKAFRVNDYSALMGSMEPNKARLKSAKEFKKAGFEIPDFGPSSTRSALFAI
FELESDVEGDDVLSHLKDLMPNYHNKREDLAAIADYIARKRETVDETESRAARILHGL
IRNERLG"
misc_feature complement(18480..18671)
/locus_tag="RPD_0013"
/note="Protein of unknown function (DUF1156); Region:
DUF1156; pfam06634"
/db_xref="CDD:148315"
misc_feature complement(16215..18269)
/locus_tag="RPD_0013"
/note="Adenine-specific DNA methylase containing a
Zn-ribbon [DNA replication, recombination, and repair];
Region: COG1743"
/db_xref="CDD:31929"
misc_feature complement(<18024..18161)
/locus_tag="RPD_0013"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(18758..19339)
/locus_tag="RPD_0014"
/db_xref="GeneID:4020468"
CDS complement(18758..19339)
/locus_tag="RPD_0014"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567155.1"
/db_xref="GI:91974496"
/db_xref="GeneID:4020468"
/translation="MSERKTIGFGVPNDIDPHHFTVEIPAVRANPVIITEHFGLSGGA
NGLPDSIERCRLPQEAWNAIRRELERVFNERLKEKKLTAARWKTGKNPVERLLGRELC
VLAWGVETAPKDTIPNAIRNWGAFKPEERWWLFAMAASLTGTSQDVDIGWRKAIRIAL
TETPTGEEVVAIRSKRPKSEGDRPRLPLFDDVK"
misc_feature complement(18767..19333)
/locus_tag="RPD_0014"
/note="Protein of unknown function (DUF3780); Region:
DUF3780; pfam12635"
/db_xref="CDD:193113"
gene complement(19336..22488)
/locus_tag="RPD_0015"
/db_xref="GeneID:4020469"
CDS complement(19336..22488)
/locus_tag="RPD_0015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567156.1"
/db_xref="GI:91974497"
/db_xref="GeneID:4020469"
/translation="MLQTIKDACQFDPKAIDYALSDQIENLDDLVGHDPVAAEAFFRK
TYVTGGMKTLLRQGLQRLAGSSGQAVFELKQAMGGGKTHSMLALGYLAANPKLFELVA
KDITQGIKAEPAQVVAISGRSISRDQHLWGDIADQLGKADKFLEFYKGMPQAPNEKDW
IGLIGDAPTLILLDELPPYFKNAITQNVGGGTLADVTTYAVSNLLSAALKLPRLCIVI
SNLSGAYEGATKSITTMVAKATRDLQNETGRQAKGITPVELGSDEIYNILRTRLLTKD
PDQKVINAVSTAFSDSISDAVKSKTIAKSATQIADEIAASYPFHPSFKHILALFKENE
RFRQTRGLMTMAALMVKSALGRPTNDVYLVGCQHIDLAQPDVRDVITNVYDLSGAITH
DIAGTATERAHAQTIDDVADTDAASQVARLVLMSSLSEANDAVKGLTKSQVVENLVAP
QRSPHEFDEAFEKLRIECWYLHRKENDAWYFSKNENLKKKIEKYASTAAQPKIDAEME
RRLQMVFEPKRRNAYSSVQALPKIEDIKPSGDRVLLVLSPDKRVPPEDAQRLFDAIVE
KNNFCVVTGDGTDLAKLEDKVRRIWATAKVLQEDGGDRSPNLAELQEETETAEFEFNS
TLIALFNRVYYPSRLPKPLPNGANEGLTYAALKLVERRTRENGPTTIDGEAAVEEALS
ATGASKLILTPADEGNAASLRNRAQDVLWGTTERKTRWKDVEERAISNVRWPWLPPKS
LDEIKRTAVSIGEWRDSGDGYIEKGPFPQAKTSVKVVTRAYNDDTGMATIEPTPVDAG
PNARVHFAPTKDVSGSSPVVPDTIFDRDDTVLWFLAVDPDGKHETGDPVKWSNTLTLT
HQPKEVMGKRTVELTVKPRGTIRWNIDGTNAREGKAYSGPIALNGDDEVKIYAYAEDA
GVEVTKVFPIRAAAEDEFKIDPELPVAIKKRQKIVSTKDVFATLKALKEARGLLKGSL
SATVGQGDVNATTRFGPQTNLNSAAIETFLGAARLSIAQEAAEVEIGFSEVHFETGRE
MEEFVKAVGWIVSPNEVEQQ"
misc_feature complement(<22138..>22458)
/locus_tag="RPD_0015"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:212217"
misc_feature complement(<21244..22377)
/locus_tag="RPD_0015"
/note="Predicted ATPase (AAA+ superfamily) [General
function prediction only]; Region: COG1483"
/db_xref="CDD:31672"
misc_feature complement(<21358..22152)
/locus_tag="RPD_0015"
/note="Protein of unknown function (DUF499); Region:
DUF499; pfam04465"
/db_xref="CDD:146886"
gene complement(22544..22762)
/locus_tag="RPD_0016"
/db_xref="GeneID:4020470"
CDS complement(22544..22762)
/locus_tag="RPD_0016"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567157.1"
/db_xref="GI:91974498"
/db_xref="GeneID:4020470"
/translation="MVRKSIEKNIAPGRPGRKPPPGDRRQFLLTMSQDVIKAVKQAGL
EDDRPAWEIMEEAAKDWLERRKSKAKKA"
gene 23030..23581
/locus_tag="RPD_0017"
/db_xref="GeneID:4020471"
CDS 23030..23581
/locus_tag="RPD_0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567158.1"
/db_xref="GI:91974499"
/db_xref="GeneID:4020471"
/translation="MTQNPSTSAWQAALVARHPNAFNVEFNGRITTPGYPSVGDGWRE
LVETAVGRMVEAAAPRGSVTIVQIKEKFGGLRIYWHGRNLSAVSTRAIEEAVALAEAR
SACTCEVCGAEGRLHKHGGWFATACPEHARGDPVRVKPGFDNIRIVRSFEPGKPPILS
CRRYDRATDTFVDVDPASLGIKE"
gene 23793..24572
/locus_tag="RPD_0018"
/db_xref="GeneID:4020472"
CDS 23793..24572
/locus_tag="RPD_0018"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_567159.1"
/db_xref="GI:91974500"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:4020472"
/translation="MRLWILSDLHLELTRGWDLPAGDARPAFDMLVVAGDLIPRMERG
VRWLAERVTDRPVIYIAGNHEFYGTDIDRTVEKARDAAAGTNIHVLQNESLTIDGVTF
LGATLWTDFDLFDNQDYAMAAAGEVMNDYRKIRIDDYQRRLRPAHTLQRHWESRDFLA
HGLRGGGRNVVVTHHGAHPEAARRGYERDITSAAYTSDLEALILEGAPELWIYGHTHE
SRDFRVGATRMISNAKGYGPWLPSDPTWDNAQFAPNFVIEI"
misc_feature 23796..24446
/locus_tag="RPD_0018"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature 23805..24500
/locus_tag="RPD_0018"
/note="Microscilla MS158 and related proteins,
metallophosphatase domain; Region: MPP_MS158; cd07404"
/db_xref="CDD:163647"
misc_feature order(23814..23816,23820..23822,23898..23900,23979..23984,
24312..24314,24435..24437,24441..24443)
/locus_tag="RPD_0018"
/note="putative active site [active]"
/db_xref="CDD:163647"
misc_feature order(23814..23816,23820..23822,23898..23900,23979..23981,
24312..24314,24435..24437,24441..24443)
/locus_tag="RPD_0018"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163647"
gene 24633..25244
/locus_tag="RPD_0019"
/db_xref="GeneID:4020473"
CDS 24633..25244
/locus_tag="RPD_0019"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567160.1"
/db_xref="GI:91974501"
/db_xref="GeneID:4020473"
/translation="MPSEFESCPMLFTNPAQRDLFVSAKSTTAIPARHPLVRDALIQA
SLDPQVRSLEFVPAATVGATQVALNAIVVVRDDGRFHLDVVEARQVRDVEMEGLFLIA
LDDLKLVPLTLTADDITRQPRFANAKTVWAYRFHTVGIEMRMRVLSVLTEDGPLQLGC
LLKRTRGPRDPAPAVMALACSDLLELDIISRPLGPATMVRSRS"
gene 25241..27334
/locus_tag="RPD_0020"
/db_xref="GeneID:4020474"
CDS 25241..27334
/locus_tag="RPD_0020"
/codon_start=1
/transl_table=11
/product="AAA ATPase, central region"
/protein_id="YP_567161.1"
/db_xref="GI:91974502"
/db_xref="InterPro:IPR000642"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="GeneID:4020474"
/translation="MTRTNAKANVKRARANVRRRAAVAKKPPRKIASKAGRKPARKGV
GRKVAAARPRGPWTTLVQPIEQPEGTNEVAESASSDPPLPRERPTARCALVAAAWTLA
TTGEIRARLKEGGSLAVVVVVPTSAWVASVKSMFEKRFGRGWEIFSIDDTTAKSPREQ
AAQNICAANELMKGHAVVGIAAQRDALPPALTTAADITIRIEPLRGSVIRRAIRLFTG
LPVGQVEDDIAAGGDFLDLLAAFRSGSTPTDILLRLRRATARSVDEGQRLPALESAVE
YGAAREWGLALARDIADYRAGRLDWREVDRGAVLHSEPGLGKTLFAQILARACGLPLI
ATSVADLFASSPGYLDSVIKASRAVFDRAAASAPCILFLDEIDALPNRATMSPRGADW
WTPVITDFLLRLDNAVANQRAGIVVIGATNNIAGVDGAMLRPGRLERSIEILRPDHAG
VINILRHHLERDLATAELTDVGHLLHGGTGAEIMMVVRQARRLARHDRRTLEVADLLR
AVVPIEEIAPDLLFRISAHEAAHAVGTLVLGCGSLLRSTVTPRGGRTTVAQDLGVAST
RATVESEAVMLLCGRAAERLILGDVSLGSGGTGASDLALATKMVAALHASSGLGETLT
YLSSHEDALETLRFDVGLRMRVEREMIAVQERADELVRRHRAAILAVAEQLRARRQLT
GTEIRQILDEMPPKS"
misc_feature 26132..26569
/locus_tag="RPD_0020"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 26168..26581
/locus_tag="RPD_0020"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature 26174..26197
/locus_tag="RPD_0020"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(26177..26200,26360..26362,26504..26506)
/locus_tag="RPD_0020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 26348..26365
/locus_tag="RPD_0020"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 26546..26548
/locus_tag="RPD_0020"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 26807..27307
/locus_tag="RPD_0020"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 27411..27716
/locus_tag="RPD_0021"
/db_xref="GeneID:4020475"
CDS 27411..27716
/locus_tag="RPD_0021"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567162.1"
/db_xref="GI:91974503"
/db_xref="GeneID:4020475"
/translation="MLVVKIEPAPSGFVPMRRCICGLAVANVSDLADIADYRVIGGES
PNGLKNRPAGIAETMFLNHPGRHRVWALVERPCGVIMKAGWVGLSNPHFDPNFVIEI"
gene 27805..28395
/locus_tag="RPD_0022"
/db_xref="GeneID:4020476"
CDS 27805..28395
/locus_tag="RPD_0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567163.1"
/db_xref="GI:91974504"
/db_xref="GeneID:4020476"
/translation="MFVHPKARASAHQFFVSAKTRTAIPTRHSLVREALVQASLDPLV
RDIGFVPSARVAAAQVALEAVVIVRDDGQFYLDIVPGRPLRDAEAEGLMLSALDELRL
APLTITEEDIRRQPRYTNARTVWHYQSTAVGIGMRMRIQRILIDAGPMRLGDLLMRDW
CSDPRPAVMSLACQDLLELNLMTEPLGPQTIVRCRS"
gene 28823..29248
/locus_tag="RPD_0023"
/db_xref="GeneID:4020477"
CDS 28823..29248
/locus_tag="RPD_0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567164.1"
/db_xref="GI:91974505"
/db_xref="GeneID:4020477"
/translation="MMSTEVLIRATEYPLDQVECVAERVVGENGDIVQVTCTDIASKV
IMGRLFVASEPAVWSVGLDLKDVVARVGGGYRHASITVDLATRELACRDEHLTRELRM
RKRLWRRRRRDPTSHNIRELAPSLAPSLAPSLPKGTIED"
gene 29308..29997
/locus_tag="RPD_0024"
/db_xref="GeneID:4020478"
CDS 29308..29997
/locus_tag="RPD_0024"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567165.1"
/db_xref="GI:91974506"
/db_xref="GeneID:4020478"
/translation="MVVRNKAAKITRSDATRRVVTYRSGHFTGYVASRKSSTVVQYES
ILERDFIYLLETDRDVLWFSEQPAPLKFSDGIAHHTWTLDFEIERSSGRYLVEVKPLS
KVKKYRLDVIYGFARAAAKASGYQNLELWTDRELKALPRLPNAEILVGSDTTYHDPAY
DLALLSTIAEIAKVSERTTVRELRSLSRLGPLSYRAVMRQIAIGGLIPADSTVFLGDD
AILLIPGGGGF"
misc_feature 29479..29679
/locus_tag="RPD_0024"
/note="TnsA endonuclease N terminal; Region:
Tn7_Tnp_TnsA_N; cl07370"
/db_xref="CDD:208682"
gene 29997..32429
/locus_tag="RPD_0025"
/db_xref="GeneID:4020479"
CDS 29997..32429
/locus_tag="RPD_0025"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_567166.1"
/db_xref="GI:91974507"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:4020479"
/translation="MSMEQSFEPHVPLIRLHKNDQVVIDEVWYRETHRTKHAVTLHPI
GGTLPRVFTGRQLRELYFDPAKRMRIVRGPNEKLDPEVAAAASRPFESFSAGQQAEML
KRYDYVLACDRFFARKLFTKRPETGYARIAEIVARYRRLVRAHQENRPSCRFDLETVG
GSTLRDWYGRWLHSGRQLGALAPLLHSRGSKEKKMDPAVRALIADCVNEKYLTAEAPP
LTVVWDYICGRIDDLNEDGRHALAKPSEMAVRRWIKDNVDPFTEVFYRKGRKKATHQF
RLTNNAPLATRPLQIVEFDETPLDIMLVDDNGKNPRRAVLTAGICVATGMIVGWHIGY
EHPSWVTVMKALRMAVLAKDTSGSGAESPYPVYGVPEMIKVDNGPAYRSHSLVAAAGQ
LQFEIRLCPVAKPNLKGKVERFFREVTRDFLSIFPGRTFSNIQERGDYDSEGNARMTL
QTVQRLFTRWVVDIYHNRPNSRCFGQTPLERWEALSGFGVRVPPQSDDLTPLIGLIVN
RTIQADGITFMGLTYRDAALKLMRQKSHMGREWMVKIDPNDLRWIYILNDEAQCWVRA
GCQRADLIEGLSLKMWMEVVKAAKEATAARQRVSIATLRRARVALLREAEAMGNKPHG
KITARDQMWIEANMNQPAYLISVDPDELDAMPNRMLPRRRAKPAENEAKRDPSMVEPA
SRAGGHPIADQDLPDAPLDVAERELDDEVREQQERDDLRQWRKRAAALSSAVSTTQKT
DAQPLRTVTEAAPPIIPDQQEDVSQARQEAPVGAFERLATAACTRTPTRLADEDDIES
WNPNNDQKEIDQ"
misc_feature 30858..31262
/locus_tag="RPD_0025"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 31521..31673
/locus_tag="RPD_0025"
/note="Mu transposase, C-terminal; Region: Mu-transpos_C;
pfam09299"
/db_xref="CDD:117843"
gene 32426..33565
/locus_tag="RPD_0026"
/db_xref="GeneID:4020480"
CDS 32426..33565
/locus_tag="RPD_0026"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567167.1"
/db_xref="GI:91974508"
/db_xref="InterPro:IPR006162"
/db_xref="GeneID:4020480"
/translation="MSRAIQKGSVVSLETALPAKASKPAVCGQPRKGPEEDAMRPQPR
RDVRSKNPSRNARADRLKGLSDVAVRTGKLAVAEQMFDELVVAYYSKVEGNLMVVYGS
SGSGKTHVLRQLRKDEDLQLDETDPECARRPLLMIEAPSPCTLKTLGLAVLQGLGYEE
AGFANLREHEVWRRARANLSNQGTGILVIDEMHNVLAGRSNMESVKIAMTLKSLMVSE
VTPIQIVISGLKTVRDFAEHFKELQRRSQFLEMTPLTSPRDDKKLVLFLEGLEKELKF
RTCGFTRHDLPVRFMMASRGLIGRVAYFVKMAAKLAITLGDDEIKQEYLGKVYERIYR
VSANQNPFLMANVASFVMPREKEADELTFVRGVKEVSRRNGDAAD"
misc_feature 32657..33160
/locus_tag="RPD_0026"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 32702..33109
/locus_tag="RPD_0026"
/note="AAA domain; Region: AAA_22; pfam13401"
/db_xref="CDD:205579"
misc_feature 32726..32749
/locus_tag="RPD_0026"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(32729..32752,32993..32995,33107..33109)
/locus_tag="RPD_0026"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 32981..32998
/locus_tag="RPD_0026"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 33158..33160
/locus_tag="RPD_0026"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 33552..35345
/locus_tag="RPD_0027"
/db_xref="GeneID:4020481"
CDS 33552..35345
/locus_tag="RPD_0027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567168.1"
/db_xref="GI:91974509"
/db_xref="InterPro:IPR000276"
/db_xref="GeneID:4020481"
/translation="MLPTSPHRNVGEGAIGFLMRLGETHGVRKFCDMLRDLGIRRFDL
SQGIGVDRVARAAMVARAALQFDSGTRTRQGVMLRGELLRPRQWSVHAGRRGCPACFA
GDRDGTVLPRQWHRAWWDIRAVTVCPLHGLLLIDACPRCGVPLDFKVNAIGQCRNGHP
LWDSSPERVTGFAGDEYIVGRLVGSDRIPNSLLDAGRLGEAIDALDLVGRCVLAGHHT
GGSGGLRRHVVLAAGFECFIDWPAAFDPLLDGLLRSSKQGVGKWGAAAAYGPLHYGLQ
ELGCGRIAMEMKAHLRRHAAANGVSISKPVFGTVPNVTGIYSVRHAARRFGMGFEGTR
TLLAREGVVPEETRRGTPIRISTAVVDRLATERSLTVGLGRLADHLALGRGQTRRLVG
AGFLGDRRPRPSLADADAMLAKLCIGAPANWDRSETASLPDACRSARCSIEVAVRSIL
AGAPDVKGYRPGAGLRGIFVRVSDLRAVGKLSRGRLTLADAAAALRVKWETARALAAD
GLLVTADDGVHPSALDNFQRDFIAAADLAKVARVRSQSLIKQLSGMGVSPAAGPPNCR
QVFYRRSSLRAVRALRRKLPGVYARALGQSR"
misc_feature 33582..33953
/locus_tag="RPD_0027"
/note="TniQ; Region: TniQ; pfam06527"
/db_xref="CDD:203473"
gene 35342..37240
/locus_tag="RPD_0028"
/db_xref="GeneID:4020482"
CDS 35342..37240
/locus_tag="RPD_0028"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567169.1"
/db_xref="GI:91974510"
/db_xref="GeneID:4020482"
/translation="MNVINRSTAVRRPLACRGPLWTDEPAYARANRLALMNGINSLAS
FGGEMRIPYRQIIWGWRNAEIAALAGMDPANLGAVTFRVGDDDRVRLGDEVLHIDDWS
YNVLRVCPACLRSDFERESRFPDLLPHIRSWWNLDAIEVCPLHRTPLLGGNPDIFGHR
NDPKILDVRFVAGVDCDLSSLQVEVGIVEDVRAESYILGRLGFMPRVRSEILDDLPLW
NAIRLMDRFGAVAAAGVRGFTSLGGSVSKREALSAGYAVFADGKDGLFCLLDRLVADA
DVARGKWGPRVAYGRIYEWLSHDTREEAYDPVRELVRQHAIDNIPMAAGDLVFDRPIG
DRHVFTLWHVSRELKTTPSATRRILKAMGHLSPDDDVKENWQVLLRKPVVDQVTADLA
DWLGFNEARALLGLPRAPMDALLQSGVLKAFLSVSTGVAEHIFRRRDLDAFMTSLVGG
APFSRKTEGLCDVVQAGRRSGTSTTDVVAALLAGRLTCCGRLSSATGMMQVLVDIEAV
RALRASGEVRRPGMTVEDARRKLGVTWPVVSNLIGLGLIKTIETRAGPKNRKQSFIED
SELEAFTAEFVSATEIAEARKTHVRVLVPALRKQGIEPAIEKTAVGQYFYTREKFTLS
RAVVESEH"
misc_feature 35378..35788
/locus_tag="RPD_0028"
/note="TniQ; Region: TniQ; pfam06527"
/db_xref="CDD:203473"
gene 37353..37691
/locus_tag="RPD_0029"
/db_xref="GeneID:4020483"
CDS 37353..37691
/locus_tag="RPD_0029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567170.1"
/db_xref="GI:91974511"
/db_xref="GeneID:4020483"
/translation="MTFFRRLLSAFLSFFRRRGKPRERARDLSRSAVQLKRWNGDDRP
PPLMWKDCHPRTQAIFKAELTCSNGHSISLRGHSISLEGHVTPSVVCQASGCDFHDYV
RLAGWTAGAL"
gene complement(37697..38431)
/locus_tag="RPD_0030"
/db_xref="GeneID:4020484"
CDS complement(37697..38431)
/locus_tag="RPD_0030"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567171.1"
/db_xref="GI:91974512"
/db_xref="GeneID:4020484"
/translation="MPSVAAEDAPLVHWSGSAYRLIPSRFPPVSIYDGLIASDRQEEL
VAVENLTNPRLRSLGRFQEAGSPGPCADPKLQNWNLAPFAYGNPDGSTFFGEERPCLE
LAMEQQTALAVSVAKRQAFMEATNEAPIGLDMRMLCHPVDGIFWDLRDVPISWSELGQ
AKRYELGAKMPIGAQGILFRPVERPTGTCLVVLTGDILQRSQQTVHFRFVWDGKKISQ
LYVFNNEGTRIDADKLAGREDVLAAT"
gene complement(38412..38798)
/locus_tag="RPD_0031"
/db_xref="GeneID:4020485"
CDS complement(38412..38798)
/locus_tag="RPD_0031"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567172.1"
/db_xref="GI:91974513"
/db_xref="GeneID:4020485"
/translation="MPTRAPVPQGEAERSKIPAELEAFFEVAERWRLSAEEQIVLLGS
PGRSTFFKWKKEGATLPADTRERLSHILGIWKSLRILFTQDDRGEAWIRAKNRYFDGA
SAIDVMLEGMVGLIRVRRYLDAQRGG"
misc_feature complement(38415..38576)
/locus_tag="RPD_0031"
/note="Protein of unknown function (DUF2384); Region:
DUF2384; pfam09722"
/db_xref="CDD:204292"
gene 38941..39660
/locus_tag="RPD_0032"
/db_xref="GeneID:4020486"
CDS 38941..39660
/locus_tag="RPD_0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567173.1"
/db_xref="GI:91974514"
/db_xref="GeneID:4020486"
/translation="MDGQVEILERRSRGMEYPVNGAMAAFPDNVVNGREVLTRSGLVP
ASEYRLILVRNGRTRLIGTDDDVDLDKEHGGSFRAFLSDRDFGFTVDEVGQVWGTADM
EVDEFLRIWPQHPEHRWVLERDDEPDTVLTPGGVLSFGPKGVEHVVSRKDAHPDKVMV
TVVTTAGVYPAEGAKRYPRSTRISDVLNDAARKLDIRDSSTWIVTVAGRDVSPTLTFA
QANLTGTVELEWGPREGGGGA"
misc_feature 38977..39189
/locus_tag="RPD_0032"
/note="Bacterial multiubiquitin; Region: Bac_multiUb;
pfam14452"
/db_xref="CDD:206618"
misc_feature 39190..39399
/locus_tag="RPD_0032"
/note="Bacterial multiubiquitin; Region: Bac_multiUb;
pfam14452"
/db_xref="CDD:206618"
gene 39653..40090
/locus_tag="RPD_0033"
/db_xref="GeneID:4020487"
CDS 39653..40090
/locus_tag="RPD_0033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567174.1"
/db_xref="GI:91974515"
/db_xref="GeneID:4020487"
/translation="MLEALSKATFDRDIGRIDPRSVRMYDWAIVQANYPVFDVIFNHA
QVAPLRLRLVCDDWDEIPPSIELLNKEGQPLATAPPNVGNVFNGSTHPNTGRPFVCMR
GAREYHTHGSHTSDLWDNYRGQSGMDLGGIVVQLWRAWKRSVG"
misc_feature 39653..40087
/locus_tag="RPD_0033"
/note="Predicted metal binding domain; Region: Metal_CEHH;
pfam14455"
/db_xref="CDD:206621"
gene 40087..40557
/locus_tag="RPD_0034"
/db_xref="GeneID:4020488"
CDS 40087..40557
/locus_tag="RPD_0034"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567175.1"
/db_xref="GI:91974516"
/db_xref="GeneID:4020488"
/translation="MSSIICTRSVLERTISIIRRDGNRGEERVALWLATAAQRSPAAI
VEVYEPEQVVEVDSFYIPPASMRALMNHLRSTRRRIAAQIHTHPGRAYHSDADAKWAI
IRHSGALSLVLPHFANATTVENFLEEVMTYEYSPAGEWIHCPNVGAGARVVVTA"
gene 40554..41921
/locus_tag="RPD_0035"
/db_xref="GeneID:4020489"
CDS 40554..41921
/locus_tag="RPD_0035"
/codon_start=1
/transl_table=11
/product="UBA/THIF-type NAD/FAD binding domain-containing
protein"
/protein_id="YP_567176.1"
/db_xref="GI:91974517"
/db_xref="InterPro:IPR000594"
/db_xref="GeneID:4020489"
/translation="MNKATQQNAMMLASLLGVGEAEAGERLARTVLITAAPGWKSGWA
VEVGELIGRTVQVSHQQEPTDPDLELVIGDVTPRTSARRVYADLGSEGAAASLEPVAK
LAGEPHGLYAAAAACAVSAVVVHAVIDAADLPQARLPMRLDYAQLGVPNGALDLRVDV
GHAVMAGAGAVAHAFLKAARHIDIHGDLAIVDPKVVQGGILNRCLYLEDNDVDRQKAE
VLAERAQRDFPHLRLLPFVTDFKAYVRQLGHPPETVFVTVDSRLVRRSIQLEVPRRII
DASTTDASGVIVHSNVLPTQHACLACIYRHVPEEHARERSIAEGLGVDLADVQAGLIT
AEVARRIVRTHKSIDGDAIVGLAFDSLFRQLCSEQALATPEGRQVLAPFAFVSAWAGV
MMAVEMLRSFAGAAKTNYWSVDPWNTPKARGRMLRQRHPECQFCSKPEYEPIIQSLWG
ELAEA"
misc_feature 40554..41003
/locus_tag="RPD_0035"
/note="E1 N-terminal domain; Region: E1-N; pfam14463"
/db_xref="CDD:206628"
misc_feature 41106..>41354
/locus_tag="RPD_0035"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature <41109..41585
/locus_tag="RPD_0035"
/note="Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2 [Coenzyme
metabolism]; Region: ThiF; COG0476"
/db_xref="CDD:30824"
misc_feature order(41127..41129,41133..41135,41160..41162,41199..41201,
41322..41324,41340..41342)
/locus_tag="RPD_0035"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73265"
gene 42301..44961
/locus_tag="RPD_0036"
/db_xref="GeneID:4020490"
CDS 42301..44961
/locus_tag="RPD_0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567177.1"
/db_xref="GI:91974518"
/db_xref="GeneID:4020490"
/translation="MRASRRTVVVHTVLAGRMERTAAARSNELGVQIVTMGQLAARLA
GGLLRPVDSEALQEAVFAALPVVDMGELEPIKLLPGMPGAVTATFDKAWRAGVDLSSA
AHPRLAALAALEQEVVGRLPASMKRPAELVAMAKERIAQASTVIGSLEIHGHSEMSPC
WRPLLEALANVVPLTWVAGPRHVPAWLEGTGVTVAKTDPTATATASYSCANQQHEVIE
AFRWVRKLLAEGVQAADIAIAATGPADYDDHMFAQVQESNLPVHFVSGVKALTTADGQ
AAAALAEVLAKGLSQERVRRLFALLRGSPALERIPREWTRLLPLGAPLTEMERWERVF
ARVEASDWPEGQDLSALVLEVLRLLDRGLAAATDVGEALLTGVPLSLWRRSLREGPPA
ALPVTLGRLRTPDALEPAASVIWCSAIDLASSPRPHVWLLGMNAGRWPRRISEDRLIP
NHVLPIEELDPLPIADGDKRDFGTILATATEVAMSHSRRDAGGRLRGRSPLIKSFAVT
YLDRGRTPEHAASEADRLLACPAEFAKLPVAVSGIGCWRDWFSGGLTAHDGLVAANHP
RITKLFERSLSATSLKLLLRDPIRFVWRYGFRWTAPEDADEPLTLDGLAFGNLVHAVL
QNAVDGLSEAGGLAAADRAAIDARIAAAIGGTVAAWEAEFPVPPAVIWRSAVERASTT
ATAALTYPMAALPDQRSWTEIPFGKPDEAEGERDLPWPTEKTVEIPGTGLLIDGKIDR
LDLAGDRSKARVLDYKTGKLDRKMAEKVIDGGRELQRCLYAFAVRTLVEAGVGVEAAL
FYPNAPEGEQAVFPLTDAALEAALAKVTQAVSLSRDALLAGAAVPGEDAADKYNDLRF
ALPANAGYLPRKKLPAIDRLGQAAAVWSET"
misc_feature 44023..44706
/locus_tag="RPD_0036"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene 44958..48305
/locus_tag="RPD_0037"
/db_xref="GeneID:4020491"
CDS 44958..48305
/locus_tag="RPD_0037"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_567178.1"
/db_xref="GI:91974519"
/db_xref="InterPro:IPR000212"
/db_xref="GeneID:4020491"
/translation="MKPIPDLVARARALTAIENTLLVEAGAGSGKTSVMAGRVAVLFG
KGVEPKNIAAITFTELAASELRLRIEKFTTALSLGDVPPDLTQAFPEGVPEAEKANLY
RACQSFDQLACTTIHGFAQSLIKPYPAEAGIDPGADIVDPDEAELAFGERYDAWLKQR
LSVDDADGLVAQLVLADEGGGLKLIEEVAQFLRKNRDARCAPAAWAEKTMADVIAAVK
RFEDALAAVGFEEEDTGLRCRTLIALVDILNPGKLSAGAPDTAALIAALNFPRHTSCF
TEKGTRRQLRNGTKWQDAAAKVGLKKADGKKTSDALVPLYDGCHNALETLLAAIAGEL
LSRLCAEMQGLLLEWRDYKRDAALLDFDDLLFTARDLLAGHPEVRRALSQRYRYVLVD
EFQDTDPLQTEILWMICGEDCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRGADVNA
YLAARSAVPQDARLAITANFRSVEPILAFVNKRFERVLSEEAGQPGFAELSPVRPPNG
DAPAVVALDVTLPQGASGVSAIRDAEAAALAELCCRLVGNLQVHDPETKELRPCRLGD
IALLAPAGTELWRFEEVLEDRGIPVATQAGKGFFRRQEIHDLIALVRTLADPRDTLAL
GALLRGPLIGLTENELLDIMEGLPVDPDRPARLPTLTVGTNPEHIAHAVARKAIENLQ
ALRRRIRITTPYALLADAMSDFHVRPHLRQRFRTGAERAVANVDLFLEFARAYDVRGL
RAFSRDMTAKWEDDEDQAEGRPDAEEESVSLITVHAAKGLEWPVVIPINMTGKPFAGG
VLMQDRPNSRFSIPVLGTEPSDYAAMKTMNALERDRERVRLWYVGVTRSRDLLVLPRH
TELPKECWATLVDLDVGALPAVDPESFGPAGTRAARIEANEQTREIFAAEAGRIFAAR
EKIVWRQPSRSEVDGEGEKPDIRIDHSEPPGPAEVEKPVVVGSAQRGVILHKLMEEII
NGEVGEHMSEIESRAALLKQHLGIEPTAEPQPVELAATVLKTLALPAIKALRPRMVAE
LPVFGSVAGADEEVLISGQVDVVALDDAGEIDVVVDWKSDVDPSAAAVDHYRQQIGDY
RRLTGAKKALLVFMTAGQVVEILLRSR"
misc_feature 44979..48224
/locus_tag="RPD_0037"
/note="ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair]; Region: RecB;
COG1074"
/db_xref="CDD:31272"
misc_feature 44982..45173
/locus_tag="RPD_0037"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature 47787..>48206
/locus_tag="RPD_0037"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene 48319..49446
/locus_tag="RPD_0038"
/db_xref="GeneID:4020492"
CDS 48319..49446
/locus_tag="RPD_0038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567179.1"
/db_xref="GI:91974520"
/db_xref="GeneID:4020492"
/translation="MLIYRFCFSAGGEQIAMARTKTLNSNGKKISKKNGPRYPTQVID
IGFNFAGYPIFSATAAALLRKMHTQKVRPPQPDHISGMAPYSRIPFAETSFIIGHWFL
ETALNETAMFFVRRAYQQTKQFASETEAVKQIDDFFSLSVSSPVKKVEAYDKICGTQI
AGKADLMEKIWTICAIRDLLYHHEANRYRGGKAPACVAKLFGYISDTPDQRSWIKAGW
SPVLGSKSAFDFVVQTVIDFTDTMSAELGHKHRFQTVDHLAKKPGIVSLCAEPGLVPP
KETIKSIQEKYTDPKTKAKVIAFDGTRRGTYYLFSKNKKYYVVHVTNRGRERTVPAWE
ILKIKNADRIGWIPIPWKGMDSELKRSVRERVSDIEIYRSA"
gene complement(49431..49802)
/locus_tag="RPD_0039"
/db_xref="GeneID:4020493"
CDS complement(49431..49802)
/locus_tag="RPD_0039"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567180.1"
/db_xref="GI:91974521"
/db_xref="GeneID:4020493"
/translation="MSSKKRIKPQRKDRDAAAGVQGLVQGSKQRARGDLRWRHRHQIR
KNGLLLNKIHHAAYDADLRVHISERLLSQQGDPLLAKAVAAMKGAKQRLPRRDKTNKI
QIGWRKGSSKNKQRCDRYAER"
gene complement(50548..51813)
/locus_tag="RPD_0040"
/db_xref="GeneID:4020494"
CDS complement(50548..51813)
/locus_tag="RPD_0040"
/codon_start=1
/transl_table=11
/product="thiolase"
/protein_id="YP_567181.1"
/db_xref="GI:91974522"
/db_xref="InterPro:IPR002155"
/db_xref="GeneID:4020494"
/translation="MMPEVYVIGTACTPFGKRPQTSFKALTREAYLAALADAGMADGR
DIAMAWFGNCGMGTFGQRNIRGQVCLSPLVREGLFPERIPTMNVEGGCATASQALHGA
WKDIASGDAQLSLAIGVEKTFVPDDPARTQEIFDGGIDQLDPGEWLAYYRDAGEVSGK
PFQPDDKRGTIFMDTYAMQAAYHMKRYGTTQRQIAIGAAKNHHHGSLNPLAQYRFTMT
ADEVLADRPISYPLTRSMCAPIGDGAAAALVCSKDYLASLPRGVRERAVKIRASAMSG
GKYRSLDEPGLSRIAADRAYKMAGISPSDIDIAEVHDATSFCEIYQVEMLRFCAEGQG
GAYVASGATALGGDRPVNLSGGLVSKGHPVGATGLSMIHELVLQLRGEAGERQAKNAR
LALAENGGGVVGFDEAACAITILERLEPN"
misc_feature complement(50563..51810)
/locus_tag="RPD_0040"
/note="acetyl-CoA acetyltransferase; Provisional; Region:
PRK06064"
/db_xref="CDD:180378"
misc_feature complement(50608..51792)
/locus_tag="RPD_0040"
/note="Thiolase domain associated with sterol carrier
protein (SCP)-x isoform and related proteins; SCP-2 has
multiple roles in intracellular lipid circulation and
metabolism. The N-terminal presequence in the SCP-x
isoform represents a peroxisomal...; Region:
SCP-x_thiolase; cd00829"
/db_xref="CDD:29416"
misc_feature complement(order(50728..50730,50878..50880,51538..51540))
/locus_tag="RPD_0040"
/note="active site"
/db_xref="CDD:29416"
gene complement(51851..53074)
/locus_tag="RPD_0041"
/db_xref="GeneID:4020495"
CDS complement(51851..53074)
/locus_tag="RPD_0041"
/codon_start=1
/transl_table=11
/product="cytochrome P450"
/protein_id="YP_567182.1"
/db_xref="GI:91974523"
/db_xref="InterPro:IPR001128"
/db_xref="InterPro:IPR002397"
/db_xref="GeneID:4020495"
/translation="MPNLDFADPKINADPFPVFAQLRESDPVHWSPVLKAWVITRYDD
VRRVAVSNADMSAERLAPFFATVPAESQSGFANLMTYLGKWMVFRDPPEHTRLRRLFT
KAFTSRSVMALEPNVGEIVALLFDEMEQKARSTGVVDWIADFAYPLPATVMMDLLGVP
RDDLHRVKDWSNDIALFIGTSRATADKYLRAEAGAKAMAEYFRGIIASRTVDPQDDII
SQLVTEPDKREALTDDEVIATCILLLFAGHETTTNLLGNGFYYTMNAPEQWARVKDDP
SLAETAVEEWLRYDGPSGALVRVVTADVEFGGRTMLQGQRVFAFINSANRDPEQFGDA
DRLDLGRSPNPHLTFGHGIHFCLGAQLARLEGQIALRALIERFPGISLATDSAPGWRD
SIILRGMQSLPIRLR"
misc_feature complement(51854..53038)
/locus_tag="RPD_0041"
/note="Cytochrome P450 [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: CypX;
COG2124"
/db_xref="CDD:32307"
gene complement(53163..55085)
/locus_tag="RPD_0042"
/db_xref="GeneID:4020496"
CDS complement(53163..55085)
/locus_tag="RPD_0042"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_567183.1"
/db_xref="GI:91974524"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4020496"
/translation="MGAWEVKGPAKGTCRSWRDAYPELAGMVARITAPRGRGIAWEGT
EIWAYRDRPSSISECLAANVARWPDREAYVFHPGGERLTWGEVGAQVDRVAAALRQEF
GFRKRDRLCLLTAGCPEYVIAYLAIVQLGGVAVPVNLGLTDEGLAAQINKVGAKGLVV
SSEVWSGKLDAVRGGLDSVEAVFVIGGAAPQGTLAFSELSSLRTTPVDHEAVDEWDLC
AISFTSGTTGVPKGTMAMHINALGCAQNVVIAAKGLGPDDVNLCMPPLYHNTAVYADF
LPALLSGGKCVIMSAFTPLEAIKLIEAERATWAVAAPIMLWMMMNHPEFRNHDCSTLK
KILFGGHASSETFINQLNREFAPIAMVNAGSVSESTAVGFALPTEDAIRKITSCGLAT
PNTDIAIFDDAGNEVLEPNVIGEVAYRGQQTNAGYWEEPGKTAEVFRRDGFVLSGDWA
KIDEDGYLWLLDRKKDMVVRGGQNVYCIEVENKLYLHPKVLRAAVVGVPDHVFSERLK
AIVVLKPGESATADEIREHCAKHLAKYETPEYVVFGASLPANAAGKTLKRPLVDFWGD
SPGTPLARFSAFCASLPPALFDTPHLKLDGRPMTPREALGELQQGSERGQHLARMIEQ
QGVCGLTTPDEARFRK"
misc_feature complement(53400..54944)
/locus_tag="RPD_0042"
/note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism]; Region: CaiC; COG0318"
/db_xref="CDD:30666"
misc_feature complement(53601..54839)
/locus_tag="RPD_0042"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(53424..>53729)
/locus_tag="RPD_0042"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
gene 55237..55872
/locus_tag="RPD_0043"
/db_xref="GeneID:4020497"
CDS 55237..55872
/locus_tag="RPD_0043"
/codon_start=1
/transl_table=11
/product="regulatory protein TetR"
/protein_id="YP_567184.1"
/db_xref="GI:91974525"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4020497"
/translation="MIAKSRRTRTASQTRQAKPARENRAADKRPALSGDRRQALISEA
ARLFGNKGYENTSMRDIAAAVGILPGSLYHHFSSKEELFVAVYSFAVSQSVDAVTAAI
EPRSAPWIRLEAACIAHMQSLLDKSRFAAVLVSHLSVSGLPEQVVALRDSYEAVFKDL
IAELPLPAGTDRRIFRLGLLGSMNWAITWYRPGGETPASIARKLLNAIRRD"
misc_feature 55309..55866
/locus_tag="RPD_0043"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 55354..55494
/locus_tag="RPD_0043"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(56111..56848)
/locus_tag="RPD_0044"
/db_xref="GeneID:4020498"
CDS complement(56111..56848)
/locus_tag="RPD_0044"
/codon_start=1
/transl_table=11
/product="pentapeptide repeat-containing protein"
/protein_id="YP_567185.1"
/db_xref="GI:91974526"
/db_xref="InterPro:IPR001646"
/db_xref="GeneID:4020498"
/translation="MKLEPGTTLDGADLSGFELSELDLSGATFNACTIADANVSGGCF
EGARFAKCRIIRCRFANADFRDAIFEECDFADDQGHLGVQFAFSRIEQARFHRCNLSF
AKFERSDLFGMEMETCNLRGAVFKKVDFARAFGGKVVKWAGAMKGCNLELADLSEIRM
PDCDLNNSRFREAVLFDADLQGADLRGCDFAQAFAAGAKLARADMRGANLSGINLVEL
GNFDRLMVSADQMHPLLAALGVDVSSE"
misc_feature complement(56711..56824)
/locus_tag="RPD_0044"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(56525..56755)
/locus_tag="RPD_0044"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(56279..56509)
/locus_tag="RPD_0044"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(56279..56407)
/locus_tag="RPD_0044"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(56201..56332)
/locus_tag="RPD_0044"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(57042..57812)
/locus_tag="RPD_0045"
/db_xref="GeneID:4020499"
CDS complement(57042..57812)
/locus_tag="RPD_0045"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase/isomerase"
/protein_id="YP_567186.1"
/db_xref="GI:91974527"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020499"
/translation="MEHLTLSRPAPDLAVVQLRGAGRVNLMSYAMLEELWRVANDLQS
DRAVRVVIVTGSEQAFSAGMNLRQKEVSEFESYSIEERLQIHSIGARACKAWEDLHAV
TIGAIEGYCIGGGLAFASALDYRVASSMATLSAPELRHGMNMSWQSVPRLVALVGPAK
ARRLIMLAEQVAAADALAWGLVDVVCDPGAALASAEAEAQRFLAMPAAPLRMTKQAIN
QAAGALNHAASYMDLEQYVLCQSTQAHRDSIDAFTGRS"
misc_feature complement(57048..57791)
/locus_tag="RPD_0045"
/note="Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism]; Region: CaiD; COG1024"
/db_xref="CDD:31227"
misc_feature complement(57246..57779)
/locus_tag="RPD_0045"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(57393..57395,57402..57407,57471..57479,
57483..57485,57615..57629,57639..57641,57735..57737,
57741..57743))
/locus_tag="RPD_0045"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(57471..57473,57621..57623))
/locus_tag="RPD_0045"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(57264..57266,57273..57275,57306..57308,
57315..57320,57324..57329,57333..57338,57351..57356,
57360..57368,57372..57374,57390..57401,57435..57446,
57507..57509,57531..57533))
/locus_tag="RPD_0045"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(57862..58605)
/locus_tag="RPD_0046"
/db_xref="GeneID:4020500"
CDS complement(57862..58605)
/locus_tag="RPD_0046"
/codon_start=1
/transl_table=11
/product="regulatory protein GntR"
/protein_id="YP_567187.1"
/db_xref="GI:91974528"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR011711"
/db_xref="GeneID:4020500"
/translation="MRESMNQSSDPDQDIAQQPPAEAVEAAGEDLISSADRAYKIIEA
RIVQLKYPPGHALSEHQLSRELGISRTPVREAFRRLAVEQLVEILPRKGAFVTEIKIN
QYLHLLDLRQQLETFMAVRAAKRATPQQRQAMATLAQELRDGIMEPEQAIFVFADRAY
KDILVEASRNPFVGGIIAPMHALSRRFWYYYRDQWTEGEAEVAIKRHLALMDAVAIGD
EAATHTAVQNLFSYLEGFARRIMDSEYKI"
misc_feature complement(57880..58509)
/locus_tag="RPD_0046"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature complement(58315..58509)
/locus_tag="RPD_0046"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(58324..58335,58339..58344,58372..58374,
58381..58386,58390..58404,58426..58431,58501..58503,
58507..58509))
/locus_tag="RPD_0046"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(57928..58287)
/locus_tag="RPD_0046"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene complement(58602..60155)
/locus_tag="RPD_0047"
/db_xref="GeneID:4020501"
CDS complement(58602..60155)
/locus_tag="RPD_0047"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_567188.1"
/db_xref="GI:91974529"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4020501"
/translation="MTDIAIYDWIASHAKSRPDRIALVDDFSGRSFSYAELDRRVGAL
AAFMLDTLGIAVGDRVATLGHNSTNILEIQFACMRVGALFVPLNVRLAAPELIEVIRD
CGARVVFHDCEFRAVVADIAAAVGATPVEMNESGQACAYEEAIAGHVPRGPRHGGTLG
DTWTLIYTSGTTGRPKGVLISYQMVLYHAVNYGFSTGLTPDSHGLTFLPMFHTSGLNL
PANPALHAGATVTVMRRFDPPRALALMGRKESPVSHTFGVPANYLFMRLLPEFAEADL
RGVRSLGVGGAPMPIPLLQAYADKGVSMQQTFGMTETGPTVTILSAERGFDKLGSAGL
PIVHVETLIADKDGAAVAPGDIGELCVRGPSITTGYWNRPEESRSAFRDGWFRTGDMA
RQDEDGYFYIVDRSKNMYISGGENVYPAEVERVIEKLAGVVEVAVVAEADEKWGEVGR
AYVVRDPSVALTEDDIIRYCRAEIAGYKVPRYVSFIGALPHNATGKLDRLHLRKIADK
ESENACTPV"
misc_feature complement(58647..60140)
/locus_tag="RPD_0047"
/note="long-chain-fatty-acid--CoA ligase; Validated;
Region: PRK06187"
/db_xref="CDD:180453"
misc_feature complement(58863..60059)
/locus_tag="RPD_0047"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(<58629..58727)
/locus_tag="RPD_0047"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene complement(60305..61537)
/locus_tag="RPD_0048"
/db_xref="GeneID:4020502"
CDS complement(60305..61537)
/locus_tag="RPD_0048"
/codon_start=1
/transl_table=11
/product="ABC-type branched-chain amino acid transport
systems periplasmic component-like"
/protein_id="YP_567189.1"
/db_xref="GI:91974530"
/db_xref="GeneID:4020502"
/translation="MTTKMTRLLRNAALAGAALLATAAQAQDTIKVGALLPLSGNYGF
LGVTERLGIDMAVEEVNSAGGILGKKVVVVYEDAGTPAQTTRKATQMLEQDKVAFFVN
GGGSAVSATMFEFAQRNKVIDLAIDPNAEELVTTKAGKYAFLVPAPSSMIANAVIPEA
IKLGKTAMFLTHDYSFGHAQTGEQRRVLKDKGGVKEVGEIKIPLNTRDFSSQIIAIRN
AKPEMLIINVAGVDATALLEQIWEFELYKQTKIVVPLLDFEDSWAIGREKNQLIALAG
IEWHYNVPAADALAFKERYQKQFPKAEYPVPTTNTVNAYLGVRETLRAIQRAGSLDSA
KIVAALENHEVKDSLKPNPLVIRAKDHQWMQDFFVYKMKNPASSKELGDIYELITVAK
GADIVVPEAQRTTDLNAQ"
misc_feature complement(60416..61453)
/locus_tag="RPD_0048"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature complement(60428..61447)
/locus_tag="RPD_0048"
/note="Periplasmic solute-binding domain of active
transport proteins that belong to the type I periplasmic
binding fold protein family; Region: PBP1_SBP_like_1;
cd06327"
/db_xref="CDD:107322"
misc_feature complement(order(60773..60775,60851..60853,61010..61012,
61151..61159,61220..61228))
/locus_tag="RPD_0048"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107322"
gene complement(61605..63122)
/locus_tag="RPD_0049"
/db_xref="GeneID:4020503"
CDS complement(61605..63122)
/locus_tag="RPD_0049"
/EC_number="1.2.1.8"
/codon_start=1
/transl_table=11
/product="betaine-aldehyde dehydrogenase"
/protein_id="YP_567190.1"
/db_xref="GI:91974531"
/db_xref="InterPro:IPR002086"
/db_xref="GeneID:4020503"
/translation="MTTKTTKKPEPSRDDWHERGLKVTPRNQLYIDGGWQPAASGGTF
ACISPIDGRTITDVAAGDAEDIDRAVKAARTAFESGVWSRQTPAQRKKVLLQFAKLVR
EHRDELALLETLDVGKPIRFSRAVDIPQVEEAISWTAEAIDKLYDEVAPTGDKSLALV
RREAVGVVGAVVPWNFPLLMAAWKFAPILATGNSLVLKPAEQSPLTALRVAELATEAG
IPNGVFNVVTGFGETAGKALGLHPDVDVLAFTGSTQVGKYFLGYSAQSNMKQVWLECG
GKSPNIIFDDVYDIDAAVKAAAMGIFFNQGQVCNAGSRLLVHKAVKAQFMEKLVAFTK
RMTPADPMDPATILGSIVSVEQARRILDYIEIGAGEGARLVAGGKPVQPVEGGCFIEP
TIFDGVGAAMRIAQEEIFGPVLSVIEFESDDEAISIANDSMYGLAAAVWTRDLNRAHR
MGQRLKAGLVWVNCYDAGDMTVPFGGVKQSGFGRDRSLHALEKYTQLKTVWINLR"
misc_feature complement(61611..63077)
/locus_tag="RPD_0049"
/note="gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional; Region: PRK09847"
/db_xref="CDD:182108"
misc_feature complement(61617..63002)
/locus_tag="RPD_0049"
/note="Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like; Region: ALDH_GABALDH-PuuC; cd07112"
/db_xref="CDD:143430"
misc_feature complement(order(61701..61703,61815..61817,61893..61895,
61899..61901,62196..62198,62295..62303,62346..62351,
62358..62360,62367..62378,62520..62525,62529..62531,
62574..62576,62598..62612))
/locus_tag="RPD_0049"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143430"
misc_feature complement(order(62196..62198,62205..62207,62301..62303,
62598..62600))
/locus_tag="RPD_0049"
/note="catalytic residues [active]"
/db_xref="CDD:143430"
gene complement(63145..63843)
/locus_tag="RPD_0050"
/db_xref="GeneID:4020504"
CDS complement(63145..63843)
/locus_tag="RPD_0050"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567191.1"
/db_xref="GI:91974532"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020504"
/translation="MLEVRDINTYYGNAHILFDLSLTIAAGECVALLGRNGAGKTTTL
RSIMGLSPPRKGAIEFRSAEIQGWVPYRIAQAGIGFVPEDRRIFPVLTVEENLKLGQK
RGTSETTWSLERVYQVFPKLKQIRDRAGGNLSGGEQQMLSIARALMGNPDLLLLDEPT
EGLAPIVVEELVHAIARLKQDAMTVLLVEQNINVALALADRCYVLDHGAIVAEGSAEF
IRNNEKLRSDLLGI"
misc_feature complement(63148..63843)
/locus_tag="RPD_0050"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature complement(63178..63840)
/locus_tag="RPD_0050"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature complement(63721..63744)
/locus_tag="RPD_0050"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(order(63274..63276,63370..63375,63595..63597,
63718..63726,63730..63735))
/locus_tag="RPD_0050"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature complement(63595..63606)
/locus_tag="RPD_0050"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature complement(63418..63447)
/locus_tag="RPD_0050"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature complement(63370..63387)
/locus_tag="RPD_0050"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature complement(63352..63363)
/locus_tag="RPD_0050"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(63268..63288)
/locus_tag="RPD_0050"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene complement(63836..64612)
/locus_tag="RPD_0051"
/db_xref="GeneID:4020505"
CDS complement(63836..64612)
/locus_tag="RPD_0051"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567192.1"
/db_xref="GI:91974533"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020505"
/translation="MSGLRTENLSVQFGAVKPVDGVSVEIAAGKLTSIIGPNGAGKTS
FFNLLTGLYLPTRGKVYFDGNDVTDMPVHQKVRCGLTRTFQILNVFDALTVEENIRVA
VQRRHGRSRKLFCAADVHGPVEDEVAEITERIRLPDKRKVRACDLSHGHRRHLEIGLS
LATRPKTLLLDEPMSGLGMYESSIMGEFVRELAQSLTVVLVEHHMSVVLSISDTILVL
SQGRLLASGTPAEIQANPAVQEAYLGSGRYDLPQERAAHA"
misc_feature complement(63878..64603)
/locus_tag="RPD_0051"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature complement(63899..64603)
/locus_tag="RPD_0051"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature complement(64484..64507)
/locus_tag="RPD_0051"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(order(64004..64006,64097..64102,64358..64360,
64481..64489,64493..64498))
/locus_tag="RPD_0051"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature complement(64358..64369)
/locus_tag="RPD_0051"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature complement(64145..64174)
/locus_tag="RPD_0051"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature complement(64097..64114)
/locus_tag="RPD_0051"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature complement(64079..64090)
/locus_tag="RPD_0051"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(63998..64018)
/locus_tag="RPD_0051"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene complement(64609..65649)
/locus_tag="RPD_0052"
/db_xref="GeneID:4020506"
CDS complement(64609..65649)
/locus_tag="RPD_0052"
/codon_start=1
/transl_table=11
/product="inner-membrane translocator"
/protein_id="YP_567193.1"
/db_xref="GI:91974534"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:4020506"
/translation="MNALISNPTARRTPIRMFVGLLALFAVLPWLLTAIGLGVNLATE
VLIIALFAMSYNILLGTTGLASFGHAAFFGSGAYAVGILQRYGLNGIVISLAAAIAAG
LVASLFVGLLVRKKRGIYFGLLTLSFGQMFYIVALRWDELTGGETGLTGLKRPAPFGL
DLSSHINFYYFTLAIFMVALWLIWRITNSPFGSLLTAIKSNEVRTQYLGYDTALYKLA
AIVISGSFSGLAGGLYAWFQYAAYPQNLFWIESGNIVILTLLGGGLSSFFGPILGAAV
FVGAQDLISGYTQHWMFFFGLIFIVVVTTFPNGLPEAFAKFVASARRRFGRTAGETVI
SAQSSSRYGADQ"
misc_feature complement(64720..65517)
/locus_tag="RPD_0052"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature complement(64987..65043)
/locus_tag="RPD_0052"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene complement(65655..66530)
/locus_tag="RPD_0053"
/db_xref="GeneID:4020507"
CDS complement(65655..66530)
/locus_tag="RPD_0053"
/codon_start=1
/transl_table=11
/product="inner-membrane translocator"
/protein_id="YP_567194.1"
/db_xref="GI:91974535"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:4020507"
/translation="MPSLAEVVSQLTNGVILGLILALVASGFTMVLSVMGVINFAHGL
LFALGAYLALSLHKVVGYWPALLIAPLVVGALGVMLEQTFIRRLYGKDPLFVLLLTFG
IAMAGEDVIQMIWGKLAYSISPPDLAKGSIDLGFMVYSKYRLFMGGFALVAIFSVWLF
LAKTPYGAMIRAGSHDSEMVGILGKNLPRIRALVFGLAAAMAALAGIIAAPLWSVRPQ
MGLDALLPAFLIVVIGGMGSFWGSVLAGLLVGVANSFAVMVVPRFSDLMMYVLAVVVL
IYRPRGLLGTRSVLE"
misc_feature complement(65679..66491)
/locus_tag="RPD_0053"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature complement(65943..65999)
/locus_tag="RPD_0053"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene complement(66611..67423)
/locus_tag="RPD_0054"
/db_xref="GeneID:4020508"
CDS complement(66611..67423)
/locus_tag="RPD_0054"
/EC_number="4.2.1.17"
/note="Catalyzes the reversible hydration of unsaturated
fatty acyl-CoA to beta-hydroxyacyl-CoA"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase"
/protein_id="YP_567195.1"
/db_xref="GI:91974536"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020508"
/translation="MSFSQLTYEVDGQVAVISLNRPERMNALTQVLENELRDAIEQAD
ADSAVRAIVLTGKGKAFCAGMDMDELEVLPPDDIQRRDWMRPYDMNRRADYQTRYSYF
PASNKPIISAINGAAAGLGLVMALYSDFRLASEKAVFATAFAKRGLIAEHGIAWILPR
VVGHANAIDLLLTSRKIDAAEAREMGLVGRVLPPDQLMPAAMALAAVLATEVSPRSVQ
VMKRQLWEAPYQELGDAISDANREMFLSIQSDDFREGVAHFIERRPARFTGK"
misc_feature complement(66614..67423)
/locus_tag="RPD_0054"
/note="enoyl-CoA hydratase; Provisional; Region: PRK06210"
/db_xref="CDD:180472"
misc_feature complement(66851..67408)
/locus_tag="RPD_0054"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(66986..66988,66995..67000,67064..67072,
67076..67078,67223..67237,67247..67249,67343..67345,
67349..67351))
/locus_tag="RPD_0054"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(67064..67066,67229..67231))
/locus_tag="RPD_0054"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(66857..66859,66866..66868,66899..66901,
66908..66913,66917..66922,66926..66931,66944..66949,
66953..66961,66965..66967,66983..66994,67028..67039,
67100..67102,67151..67153))
/locus_tag="RPD_0054"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(67486..67848)
/locus_tag="RPD_0055"
/db_xref="GeneID:4020509"
CDS complement(67486..67848)
/locus_tag="RPD_0055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567196.1"
/db_xref="GI:91974537"
/db_xref="GeneID:4020509"
/translation="MRLAPSWIIRQSQLLASTERAAEQSVAPTFAECGHSPLEGWTPH
SARQKMQLPVSSHPHRDIVLSAAAPGHIVDACEKSRPNQPRSRIDVVDICLQTTPSPA
SAVSPHRSREPRKSLTSN"
gene 68026..69015
/locus_tag="RPD_0056"
/db_xref="GeneID:4020510"
CDS 68026..69015
/locus_tag="RPD_0056"
/codon_start=1
/transl_table=11
/product="integral membrane protein TerC"
/protein_id="YP_567197.1"
/db_xref="GI:91974538"
/db_xref="InterPro:IPR005496"
/db_xref="GeneID:4020510"
/translation="MDFLLLEWLGKPAWMWLGFLAIVGLLLAFDLGVLHRKQKEIEVG
ESLALSAGYIALGTAFAGLVWWQLGETAGIQYLTGFVVEKSLALDNVFVIALIFGFFA
VPRKYQHRVLFWGILGVIVLRAIMIGIGATLVAEFAWVLYLFAAFLILTGIKMLVIGD
KETDLAKNPVLRFIRRRFRVTDALHGERFFVKLPDPKTGQLVRYMTPLCLALILIEIA
DVIFAVDSVPAVFAITSDPYIVYTSNIFAILGLRALYFALAAVLHRFAYLKQALAVLL
IFIGAKIFVADLLGLEKFPAAWSLGATFAILAAGIAYSLWRTRNPAPHLKGET"
misc_feature 68059..68982
/locus_tag="RPD_0056"
/note="integral membrane protein, TerC family; Region:
R_switched_Alx; TIGR03718"
/db_xref="CDD:200316"
gene 69012..69314
/locus_tag="RPD_0057"
/db_xref="GeneID:4020511"
CDS 69012..69314
/locus_tag="RPD_0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567198.1"
/db_xref="GI:91974539"
/db_xref="GeneID:4020511"
/translation="MMPLLLCPNDNGSMQTVQRSGVEFDICPTCRGVWLDRGELEKLL
AVSRSDDSGDAQAHAQPVRDAFNARPAPRSEGRREWDDDDDYGRKRRRSSIFDIFD"
misc_feature 69021..>69200
/locus_tag="RPD_0057"
/note="Transcription factor zinc-finger; Region: zf-TFIIB;
cl01565"
/db_xref="CDD:207450"
gene 69369..69836
/locus_tag="RPD_0058"
/db_xref="GeneID:4020512"
CDS 69369..69836
/locus_tag="RPD_0058"
/codon_start=1
/transl_table=11
/product="tellurite resistance protein-like"
/protein_id="YP_567199.1"
/db_xref="GI:91974540"
/db_xref="GeneID:4020512"
/translation="MPNRRSPGRPSERLLEDFGDEVQQAQNEHLMEGIVAGCALVAYA
DGWVTPEEHDRMLSLIRGFEPITAFGLDEVTATFEALTKRFATDQRDGEAAAFAAVAR
VKGAARYPALLVGVCCAIAAADGGFDAEERKAALRICEVLGLDPTEFDLADAP"
misc_feature 69456..69800
/locus_tag="RPD_0058"
/note="tellurite resistance protein terB; Region: terB;
cd07176"
/db_xref="CDD:143580"
misc_feature order(69501..69503,69522..69524,69738..69740,69759..69761)
/locus_tag="RPD_0058"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143580"
gene 70113..70730
/locus_tag="RPD_0059"
/db_xref="GeneID:4020513"
CDS 70113..70730
/locus_tag="RPD_0059"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567200.1"
/db_xref="GI:91974541"
/db_xref="InterPro:IPR002453"
/db_xref="GeneID:4020513"
/translation="MRDLDKALADIIAIRSQIAAGTAFRGYGPTALAATAGLALITAV
LQSLWLDEPDSHPLSFFSGWAATACLSGAIIWIEMRARSHRHHSGLADAMIHQAIEQF
LPAGVAGALLALTLWKFAPETLWMLPGLWQILVSLGIFASVRSLPRSVAFVGAWYFVA
GFAVLALASANHALSPWTMGLPFMVGQLLMAAFVHFASGEIDAEG"
gene 70717..71097
/locus_tag="RPD_0060"
/db_xref="GeneID:4020514"
CDS 70717..71097
/locus_tag="RPD_0060"
/codon_start=1
/transl_table=11
/product="regulatory protein ArsR"
/protein_id="YP_567201.1"
/db_xref="GI:91974542"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:4020514"
/translation="MPKAEANNAPFSYDGLDRVIHEKARLGLLASLMAHPKGLAFADL
KKLCGLTDGNLSRHLQVLQEAGLVDVIKGYEGNRPHTFCRLTKTGRRRFLDYLAVLEQ
LVRDAAKAAGQDDAAPTRLGILPA"
misc_feature 70768..>70932
/locus_tag="RPD_0060"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(70768..70773,70783..70791,70834..70842,70867..70878,
70882..70887,70894..70899,70903..70908,70924..70932)
/locus_tag="RPD_0060"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(70768..70770,70774..70776,70783..70785,70792..70797,
70804..70809,70816..70818,70912..70914)
/locus_tag="RPD_0060"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature order(70834..70836,70843..70845)
/locus_tag="RPD_0060"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene 71131..71868
/locus_tag="RPD_0061"
/db_xref="GeneID:4020515"
CDS 71131..71868
/locus_tag="RPD_0061"
/EC_number="2.5.1.31"
/note="catalyzes the formation of undecaprenyl
pyrophosphate from isopentenyl pyrophosphate"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate synthase"
/protein_id="YP_567202.1"
/db_xref="GI:91974543"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:4020515"
/translation="MQRTLLSKQNAAKLHVGIIMDGNGRWATRRGLSRLRGHEAGVEA
IRRVVEAAPRQGVGTLTLFAFSSDNWRRPKAEVAALMGLLRIYLANEVKSLVRNGVRL
TVIGRRDRLPDGIAAAIAAAEVDTTGGETLNLRIAVDYSARDAILNAAAHAREIGNCS
RETFSDLVTGDPRLRDVDLIIRTSGEKRLSDFLLWESAYAELHFTERMWPDFDEDDLA
DALASFHRRERRFGGLQPIDPNLALSV"
misc_feature 71131..71862
/locus_tag="RPD_0061"
/note="undecaprenyl pyrophosphate synthase; Provisional;
Region: PRK14839"
/db_xref="CDD:173300"
misc_feature 71185..71829
/locus_tag="RPD_0061"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature 71191..71193
/locus_tag="RPD_0061"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature 71194..71205
/locus_tag="RPD_0061"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature order(71314..71328,71368..71373,71377..71385,71464..71466,
71485..71487,71530..71532,71536..71538)
/locus_tag="RPD_0061"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature order(71557..71559,71584..71586,71593..71595,71620..71622,
71689..71694,71701..71703,71713..71715,71722..71724,
71734..71736)
/locus_tag="RPD_0061"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature order(71674..71676,71692..71694)
/locus_tag="RPD_0061"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene 71985..73535
/locus_tag="RPD_0062"
/db_xref="GeneID:4020516"
CDS 71985..73535
/locus_tag="RPD_0062"
/EC_number="1.14.13.81"
/codon_start=1
/transl_table=11
/product="magnesium-protoporphyrin IX monomethyl ester
anaerobic oxidative cyclase"
/protein_id="YP_567203.1"
/db_xref="GI:91974544"
/db_xref="InterPro:IPR006158"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR011772"
/db_xref="GeneID:4020516"
/translation="MRILLINVPHPSIGSRIPDDHLPPLGLLAIGGPLIDDGHDVRLI
DGEFGPMSTSAIVEQAVAFLPDAVLFGHSGSTSGHPVIAEVAHDLANAIPGVHIVYGG
VFPTYHWRDIMADEPYVTAIVRGEGEETALRLMAALARGESLGDVPGIAYREADETRA
TKPATVIRDLDAYRIGWELIDHKRYSYWGGLRAVVVQFSRGCPHLCSYCGQRGFWTQW
RHRDPVLFAKELARLHREQGVKVINFADENPTVSKKIWRTFLEALIAEDVDLILVGST
RADDIVRDADILPLYKKAGWVRFLLGLESTDEKTLELIRKDAATTTDREAIRLMRQHG
ILSMATWVVGFEEETDRDHWRGLRQLLSYDPDQIQLLYVTPHRWTPYFNSVAGRRVIQ
TDRRRWDYKHQVLATRNMPPWRVLLWVKWTELVLQGRPKAIWRVLFHRDVRLREAMRW
YTRMGRRVWPYEIINFLLDRRLKNGPTVTQFWGASQDSEEQSMSSAGRGRPTGVKSRL
RKTRTVIE"
misc_feature 71988..73427
/locus_tag="RPD_0062"
/note="magnesium-protoporphyrin IX monomethyl ester
anaerobic oxidative cyclase; Region: BchE; TIGR02026"
/db_xref="CDD:131081"
misc_feature 72114..72446
/locus_tag="RPD_0062"
/note="B12 binding domain_like associated with radical SAM
domain. This domain shows similarity with B12
(adenosylcobamide) binding domains found in several
enzymes, such as glutamate mutase, methionine synthase and
methylmalonyl-CoA mutase, but it lacks the...; Region:
radical_SAM_B12_BD; cd02068"
/db_xref="CDD:30206"
misc_feature 72570..73067
/locus_tag="RPD_0062"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(72588..72590,72594..72596,72600..72602,72606..72614,
72717..72719,72723..72728,72807..72815,72888..72890,
73008..73010)
/locus_tag="RPD_0062"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 73673..74686
/locus_tag="RPD_0063"
/db_xref="GeneID:4020517"
CDS 73673..74686
/locus_tag="RPD_0063"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567204.1"
/db_xref="GI:91974545"
/db_xref="GeneID:4020517"
/translation="MASRHFLKGLIKLSTREPWSDRFEQILEDHLILACDETGLEIDD
VVSTIGEDLFMSTVWACAFEDFLTREFDDGENAIDDYLKRRGWKESAAVVTYMAALRN
STMSLYEVSDLVPGASFRARDLIRGGEPVLISERSALQVYPGFHSTGATSWSWVAEGK
PAPARSGAGESSTKSLTFESWLDDGALVLGDIRLEDQSLVLRVNSRQRSDRGCALLSE
VLGPRVGAPSVKMESVEQMMASRGVAAPDQLDIPEQEQCAIIHRSMDRHYRDVLDQPV
AMLGGKTPRAAVKTKSGRTKVVDWLKMIENQSAKSADPSSPMANYDFGWLWAELGISE
LRR"
gene complement(75240..76196)
/locus_tag="RPD_0064"
/db_xref="GeneID:4020518"
CDS complement(75240..76196)
/locus_tag="RPD_0064"
/codon_start=1
/transl_table=11
/product="helix-turn-helix, AraC type"
/protein_id="YP_567205.1"
/db_xref="GI:91974546"
/db_xref="InterPro:IPR000005"
/db_xref="GeneID:4020518"
/translation="MRRRFDSNWRTALAEPKRVSAVDRASEQVGRPPRSAIRSWSQRK
IEVGYWSIDWPGVVQREMSLSTKAFCELSMVLTPVDDMTLLCGETTIRTGPLQSGRFR
VAPANTTLSASVSASSTVKFLKVFFAEETARAIGSAIHSHSIDIEMEDPMLGTDDPFL
VSLGREVVENINDPRPTSRAFAEEAAILMAGRVVSHYSTARYCTSMAVRSRGLDPDLD
RALQLMRDHICGTIDLGMLATSVDMPAFSFVRAFQKKYGLSPIRYHRHMRMEQAKTLL
STTAFPIGKISNMLGFSESSHFVSAFRKATGRTPLAYRRTRS"
misc_feature complement(75255..75503)
/locus_tag="RPD_0064"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(75252..75365)
/locus_tag="RPD_0064"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 76970..79036
/locus_tag="RPD_0065"
/db_xref="GeneID:4020519"
CDS 76970..79036
/locus_tag="RPD_0065"
/codon_start=1
/transl_table=11
/product="chemotaxis sensory transducer"
/protein_id="YP_567206.1"
/db_xref="GI:91974547"
/db_xref="InterPro:IPR000727"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:4020519"
/translation="MTIKTTRSSEPRTSGLLDLFTNRKIGTKVAVGFVLIQVLMVVLA
VLNYFSFENVRQAFVALDQRVQVVGIVRDVDRGFTAFRRFVREYSLTGDEALIHEAES
RQNALRESIAQGLKEIHDPSRLAKMREISQTFEAYTTSFADVIRMRREQSTLIREVLD
PTGQKARLKLEQLQAATTAEVGGETTSLLVAEAVKQLLLLRIDVNKVLGRHDQAAADA
AEKALVDLRGAMSALKIAIGSSAGRKQIGEIEVDIKNYADAYQKASRVAHEVEVLVNG
AMPKVATVIADGAASIKQSGIADQQMIAKNTEALLDDTKSQILIITVGAVAIGLVLAW
LIGRAISRPIIRMSGAMKELAGGNLRVDVPGSGRLDEIGLMACTVEVFKRNALEVERL
KTEQEEAESRVAAEHKAEMHRLADNFEGAVGEIIQTVTSASTELEASAGSLTTTADRS
QQLATTVAAASEQASANVQSVASATEEMASSISEISRQVQTSARIAGEAVDQARKTND
RIGQLADAANRIGDVVDLINTIAGQTNLLALNATIEAARAGDAGRGFAVVAQEVKALA
EQTAKATGEISQQVSGMQAATQDSVGAIREIGGTIERMSEIASTIASAVEEQGAATQE
ISRNVQQAAQGTQQVSSNICDVQRGATETGSASTQVLAAVQSLSRDSNRLKDEVTRFV
ETVRAA"
misc_feature 77033..77488
/locus_tag="RPD_0065"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature 77987..78124
/locus_tag="RPD_0065"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(77987..77992,77999..78004,78008..78013,78020..78025,
78029..78031,78080..78085,78089..78094,78101..78106,
78110..78115,78122..78124)
/locus_tag="RPD_0065"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 78404..78910
/locus_tag="RPD_0065"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(78404..78406,78413..78415,78422..78427,78431..78436,
78443..78445,78452..78457,78464..78466,78473..78478,
78485..78490,78497..78499,78503..78508,78515..78517,
78524..78529,78536..78541,78548..78550,78557..78559,
78566..78571,78578..78580,78590..78592,78599..78601,
78620..78622,78632..78634,78641..78643,78650..78655,
78662..78664,78671..78676,78683..78688,78692..78697,
78704..78709,78746..78751,78758..78760,78767..78772,
78776..78781,78788..78793,78800..78802,78809..78814,
78821..78823,78830..78835,78839..78844,78851..78856,
78860..78865,78872..78874,78881..78886,78893..78895,
78902..78907)
/locus_tag="RPD_0065"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 78407..79012
/locus_tag="RPD_0065"
/note="Methyl-accepting chemotaxis protein (MCP)
signalling domain; Region: MCPsignal; pfam00015"
/db_xref="CDD:143806"
misc_feature 78566..78667
/locus_tag="RPD_0065"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 79164..81395
/locus_tag="RPD_0066"
/db_xref="GeneID:4020520"
CDS 79164..81395
/locus_tag="RPD_0066"
/codon_start=1
/transl_table=11
/product="GGDEF domain-containing protein"
/protein_id="YP_567207.1"
/db_xref="GI:91974548"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="InterPro:IPR003018"
/db_xref="GeneID:4020520"
/translation="MISAPLPDNEQARLAALRRYDILDTPPEDCFDIFPRLVVRAIGV
PSAVISFVDRERQWFKARINVGDQQTPRDIAFCAHAILLERPLVVADATIDPRFHDNP
LVTAPGGMRFYAGAPIRTADGFPIGVLCAIDKVPRLLGKAQLETLRELASLVADQLEL
RLANRRLARELAERERTENHLLSMSRTLELSNLRLDAALNNFLHGLCMFDGDRKVVVS
NARFSEIYSLEPDEIECGVPLSAIQSVCRERGTFVETWSERRLGRSSHEISEVSSLLD
GRAILVRCQPVAGGGWMTVHEDITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEA
CARLRRWGETFSVIMLDLDRFKLVNDSLGHPAGDALLRAVVSRLKACIRETDVLARLG
GDEFAVLQTRTKDSYEEAVAFADRIVNCLIDPIEIEGHQLVISTSAGIALAPQHGTDS
DELIKNADLALYQAKAAGRNGYVTFETAMKDRANARQQLEGELRQAILHREFDLYYQP
QVDARSGRVIGAEALLRWRHPRRGFVPPSEFIPIAEETGLIEKLGEWVLTEATTEAIR
WPAPIKLAINLSPIQLTRGKLVDTVTQALRFSGLPPGRLEVEITETVFLEDEVNNLAV
IRQLRALGVSVALDDFGTGYSSLSYLTRFPFDQIKIDKFFSMNLIDRRDCAAIVSSVI
TLARGLGISTVAEGVETVRQFELLREAGVDYFQGYLFGHPVPASALDFGTAQAVARIT
EVA"
misc_feature 79191..79628
/locus_tag="RPD_0066"
/note="FOG: GAF domain [Signal transduction mechanisms];
Region: FhlA; COG2203"
/db_xref="CDD:32385"
misc_feature 79239..79628
/locus_tag="RPD_0066"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:201875"
misc_feature 79758..80084
/locus_tag="RPD_0066"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 80103..80582
/locus_tag="RPD_0066"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(80214..80216,80343..80345)
/locus_tag="RPD_0066"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(80229..80231,80238..80243,80253..80255,80265..80267,
80331..80333,80337..80348)
/locus_tag="RPD_0066"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(80319..80321,80409..80411)
/locus_tag="RPD_0066"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 80634..81344
/locus_tag="RPD_0066"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(81952..82028)
/locus_tag="RPD_R0001"
/note="tRNA-Arg5"
/db_xref="GeneID:4020521"
tRNA complement(81952..82028)
/locus_tag="RPD_R0001"
/product="tRNA-Arg"
/db_xref="GeneID:4020521"
gene complement(82163..83650)
/locus_tag="RPD_0067"
/db_xref="GeneID:4020522"
CDS complement(82163..83650)
/locus_tag="RPD_0067"
/codon_start=1
/transl_table=11
/product="ATPase-like ATP-binding protein"
/protein_id="YP_567208.1"
/db_xref="GI:91974549"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020522"
/translation="MQAADRQPETRVWRRGLEPKIGLSGKLLLLTIPLILIAEILIYV
PSIANFRLNRLNDRLAAASTAALVLDASASGTVPDTLARQVLDSIDARAVAIKMGQQR
RLLASSNVPTTIDYVVDMRNVTPWGAIIDAFVVMLESGNQTIRVMGPTEGNAQFIEVV
IDEAPLRIAMYRFSSNLLLVSLTITSLTTALIYLALHFLFVRPMRRLTANMVNFRRDP
ESPASIVVPGPRGDEIGLAERELSDMQRDLVSMLHQKSRLAALGLAVSKINHDLRNLL
ASSQLLSDQLSSVPDPRVQRFAPKLVRSLERAIAFCQSTLSYGRAQEAAPDRRVILIE
PVVNEVRETAGLASDTGVSSITWVSAIERGLTMDADPDQLFRVLLNLVRNAAQALEGQ
PRNEVALQQIRITGRREGSVTILEVSDTGPGVPQKARDHLFEAFHGSARAGGSGLGLA
IAAELVRAHGGDIKLVEGTLGATFRLSIPDRPVDLYSLRNERARA"
misc_feature complement(82217..82531)
/locus_tag="RPD_0067"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(82229..82231,82235..82240,82256..82258,
82304..82315,82379..82384,82388..82390,82394..82396,
82400..82402,82490..82492,82499..82501,82511..82513))
/locus_tag="RPD_0067"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(82499..82501)
/locus_tag="RPD_0067"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(82307..82309,82313..82315,82382..82384,
82388..82390))
/locus_tag="RPD_0067"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 83786..84514
/locus_tag="RPD_0068"
/db_xref="GeneID:4020523"
CDS 83786..84514
/locus_tag="RPD_0068"
/codon_start=1
/transl_table=11
/product="ribonuclease P protein component"
/protein_id="YP_567209.1"
/db_xref="GI:91974550"
/db_xref="InterPro:IPR000100"
/db_xref="GeneID:4020523"
/translation="MPNAGLARIGGPIRQKRRRAQLTRPGRSRISRANCPRWPGSTGA
VHFLGCLRLICEPHHRAYLNLLNNLPGLRRTTREADLSTEQIGAQAPSRLSCPSCHRW
WPKGAGGAPRPRTQASERLSGPSRDQIMDRLRQRADFIAVAGGLRISGPAFVLQGRRR
DDEGPVRVGFTVTKKIGTATERNRIRRRMRELVKRADRSFMLPNSDYVLVGRRAALSR
DFAVMLGDLRSALDRIARRSSKPD"
misc_feature 84179..84508
/locus_tag="RPD_0068"
/note="Ribonuclease P; Region: Ribonuclease_P; cl00457"
/db_xref="CDD:212221"
gene 84531..86396
/locus_tag="RPD_0069"
/db_xref="GeneID:4020524"
CDS 84531..86396
/locus_tag="RPD_0069"
/note="functions to insert inner membrane proteins into
the IM in Escherichia coli; interacts with transmembrane
segments; functions in both Sec-dependent and -independent
membrane insertion; similar to Oxa1p in mitochondria"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_567210.1"
/db_xref="GI:91974551"
/db_xref="InterPro:IPR001708"
/db_xref="GeneID:4020524"
/translation="MTDNRNTILAVILSGLVLLGWQYFFNIPQMEKQRAAQQAQQQQE
AAKQQTPPAATTPGAPNAPAAPGAPGAPANQPAANAPVVSRDAAIAASPRIKVETPRL
DGTLSLKGARIDDLSLSQYHETVDPKSAPIHLFSPSGSANPYYAEFGWVGAAGSNVKL
PDQNTLWEQEGSGALTPANPVTLKWDNGEGLTFRRQIAVDDRYLFTIKDDVTNVGGGP
VTLYPFALISRHGTPHVEGFYILHEGLIGYLGEQGLQEYGYAKIDEAKTVGFKATNAW
MGITDKYWASALLPDTNAQLQARFSSNQVGATRTYQTDYLEDAKTVPIGGTATATARL
FAGAKEARVVGINFPFAGLGGYNQQLGLNHFDLLIDWGWFYFITKPMFLALDFFFHLV
GNFGVAILLVTVLVKLIFLPLANKSYASMAKMKAIQPQLLALKERHPDDKAKQQQEMM
EIYRKEKINPVAGCLPVLLQIPVFFSLYKVLFVTIEMRHAPFFGWIHDLSAADPTNLF
NLFGLIPYDPSTLPVIGSYLVLGVWPLVMGFTMWFQMKLNPQPPDPTQQMIFAWMPVI
FTFMLAHFPAGLVIYWAWNNTLSVIQQAYIMRRNGVKVELWDNLKSAVVKPKKTA"
misc_feature 84537..86366
/locus_tag="RPD_0069"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature 85710..86324
/locus_tag="RPD_0069"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene 86689..87342
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/db_xref="GeneID:4020525"
CDS 86689..87342
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_567211.1"
/db_xref="GI:91974552"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR005289"
/db_xref="InterPro:IPR006073"
/db_xref="GeneID:4020525"
/translation="MTDAINPTLIERGRKVFAGDWHFIWASPSIETLPPMAGIEVAFA
GRSNVGKSSLINALTGRNALARTSNTPGRTQELIFFDGPTDAGLRLVDMPGYGYAAAS
KAKVASWTSLIHKFLQGRATLARVYVLIDGRHGLKDVDLDILKTLDKSAVSYQIVFTK
ADQVKAAELEQRIAATKTVLAKHPAAFPELLMTSSRTGAGMPELRAAMIRLLDERGA"
misc_feature 86731..87336
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature 86806..87324
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature 86821..86844
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature order(86827..86847,86887..86895,86902..86910,86962..86964,
87166..87168,87172..87174,87268..87273)
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature 86899..86919
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature 86908..86910
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature 86962..86973
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature order(86971..86982,87001..87045,87052..87057)
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature 87163..87174
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature 87268..87276
/gene="engB"
/locus_tag="RPD_0070"
/gene_synonym="yihA; ysxC"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 87339..87707
/locus_tag="RPD_0071"
/db_xref="GeneID:4020526"
CDS 87339..87707
/locus_tag="RPD_0071"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567212.1"
/db_xref="GI:91974553"
/db_xref="InterPro:IPR006696"
/db_xref="GeneID:4020526"
/translation="MTPLLRVLIVCAGIAGAAGVALAAAAAHVPDASRLGPASSMLLF
HASAILAAVLLCERGGVHRIPGLAAGCGFVIGAALFAGDLSLRQFSGHALFPMAAPTG
GVLLIGSWLLLAVAGLWPRR"
misc_feature <87450..87650
/locus_tag="RPD_0071"
/note="Protein of unknown function (DUF423); Region:
DUF423; pfam04241"
/db_xref="CDD:202941"
gene 87920..88816
/locus_tag="RPD_0072"
/db_xref="GeneID:4020527"
CDS 87920..88816
/locus_tag="RPD_0072"
/EC_number="2.7.2.8"
/note="catalyzes the phosphorylation of
N-acetyl-L-glutamate to form N-acetyl-L-glutamate
5-phosphate"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_567213.2"
/db_xref="GI:228924660"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:4020527"
/translation="MTDAPVISPIDQARILSEALPHMQRYDEETIVIKYGGHAMGAEN
DAKAFARDIVLLEQTAVNPVVVHGGGPQIATMLKRLGIKSEFAAGLRITDGATIEIVE
MVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVTASKATRTMVDPDSRIEEVVDLGFV
GEPEKVDLTLLNQLIGHELIPVLAPLATSATGQTFNVNADTFAGAVAGALKAKRLLLL
TDVPGVLDKSKQLIPELSIKDARKLIADGTISGGMIPKVETCIYALEQGVEGVVILDG
KVPHAVLLELFTNQGTGTLIHK"
misc_feature 87962..88807
/locus_tag="RPD_0072"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature 87962..87991
/locus_tag="RPD_0072"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature order(87965..87973,87977..87979,87986..87991,88070..88072,
88082..88084,88094..88096,88154..88159,88214..88216,
88223..88228,88241..88243,88250..88252,88262..88264,
88283..88285,88289..88297,88301..88303,88307..88318,
88427..88429,88454..88456,88757..88759,88766..88771,
88781..88783)
/locus_tag="RPD_0072"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature order(88019..88021,88028..88033,88511..88513,88574..88582,
88592..88594,88661..88663,88667..88669,88673..88678,
88685..88687)
/locus_tag="RPD_0072"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature order(88121..88126,88187..88192,88505..88507,88511..88516)
/locus_tag="RPD_0072"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene 88816..89970
/locus_tag="RPD_0073"
/db_xref="GeneID:4020528"
CDS 88816..89970
/locus_tag="RPD_0073"
/codon_start=1
/transl_table=11
/product="peptidoglycan binding domain-containing protein"
/protein_id="YP_567214.1"
/db_xref="GI:91974555"
/db_xref="InterPro:IPR002477"
/db_xref="GeneID:4020528"
/translation="MTGAKATSSCPGRGAARSAAPQTRDPGSAEPHKPGPRIISAPRR
EGRRAALHPGHACLFVATLLASLAGNTAAHADLKLCNRMSYVIETAIGIDDKATTATR
GWLRIDPAQCRVVLQGALSADRVMLHARALAVYGASPIPQNGTDRLCITPENFVIAAA
RQCRSGQTLAPFTEIKPTQQDDGNMVAYLAEDSEYDDEQARLAAIQRLLVIAGYDAAP
IDGVDGPKTQAALAAFLKSRGLKPDIVSAPDFFDTMIKAVESPSATGLTWCNDTRSRI
MAAIAEDDGKTITSRGWYRIEPGKCLRPDLSALPKRVFSFAEAVDGNARPITLKDKPL
NWGGATLLCTRESKFEISEQGDCSARGLNATGFAPVDLSGGGKTVRFATP"
misc_feature 89029..89361
/locus_tag="RPD_0073"
/note="Protein of unknown function (DUF1036); Region:
DUF1036; cl02296"
/db_xref="CDD:154845"
misc_feature 89425..>89544
/locus_tag="RPD_0073"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
misc_feature 89596..89961
/locus_tag="RPD_0073"
/note="Protein of unknown function (DUF1036); Region:
DUF1036; cl02296"
/db_xref="CDD:154845"
gene 89967..90668
/locus_tag="RPD_0074"
/db_xref="GeneID:4020529"
CDS 89967..90668
/locus_tag="RPD_0074"
/codon_start=1
/transl_table=11
/product="pyrimidine 5-nucleotidase"
/protein_id="YP_567215.1"
/db_xref="GI:91974556"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006402"
/db_xref="InterPro:IPR010237"
/db_xref="GeneID:4020529"
/translation="MTELSKRGFGHVDTWVFDLDNTLYPHHVNLWQQVDGRIRDFVAD
WLKVTPEEAFRIQKDYYKRYGTTMRGMMSEHGVSADDYLAYVHAIDHSPLEPNPAMGA
AIAQLPGRKLILTNGSTDHAGKVLERLGIGHHFEAVFDIVAAELEPKPAAQTYHRFLT
LHGVDPARAAMFEDLARNLAVPHQLGMTTVLVVPDGSKDVVREDWELEGRDAAHVDYV
TEDLTGFLAGLNEAV"
misc_feature 90009..90542
/locus_tag="RPD_0074"
/note="Haloacid dehalogenase-like hydrolase; Region:
HAD_2; pfam13419"
/db_xref="CDD:205597"
misc_feature 90231..90542
/locus_tag="RPD_0074"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 90309..90311
/locus_tag="RPD_0074"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 90762..91607
/gene="dapD"
/locus_tag="RPD_0075"
/db_xref="GeneID:4020530"
CDS 90762..91607
/gene="dapD"
/locus_tag="RPD_0075"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_567216.1"
/db_xref="GI:91974557"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005664"
/db_xref="GeneID:4020530"
/translation="MSLSALENTINTAFDARDTISAATKGEVRDAVDQALDLLDRGEA
RVAERDASGTWTVNQWLKKAVLLSFRLNDMHTIAGGPGGATWWDKVPSKFEGWGESRF
REAGFRAVPGAIVRRSAFIAKNAVLMPSFVNLGAYVDEATMVDTWSTVGSCAQIGKRV
HISGGVGIGGVLEPLQAGPVIIEDDCFIGARSEVAEGVIVRRGAVLAMGVFLGASTKI
VDRETGEVFIGEVPEYAVLVPGALPGKPLKNGTPGPSTACAVIVKRVDERTRSKTSIN
ELLRD"
misc_feature 90768..91601
/gene="dapD"
/locus_tag="RPD_0075"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature 91077..91490
/gene="dapD"
/locus_tag="RPD_0075"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(91083..91088,91095..91100,91146..91148,91152..91154,
91200..91208,91254..91256,91332..91334,91338..91340,
91392..91394,91473..91484,91488..91490)
/gene="dapD"
/locus_tag="RPD_0075"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(91083..91085,91107..91109,91143..91145,91158..91160,
91194..91196,91215..91217,91242..91244,91248..91250,
91269..91271,91275..91280,91287..91289,91326..91334,
91347..91349,91380..91385)
/gene="dapD"
/locus_tag="RPD_0075"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(91083..91085,91107..91109,91143..91145,91158..91160,
91194..91196,91215..91217,91275..91277)
/gene="dapD"
/locus_tag="RPD_0075"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(91248..91253,91269..91271,91287..91289,91326..91334,
91347..91349,91380..91385)
/gene="dapD"
/locus_tag="RPD_0075"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 91810..92097
/locus_tag="RPD_0076"
/db_xref="GeneID:4020531"
CDS 91810..92097
/locus_tag="RPD_0076"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567217.1"
/db_xref="GI:91974558"
/db_xref="GeneID:4020531"
/translation="MELLMAEFRRIIIKTAEVMMVLLVIITILATAGLGAISGSETSG
ALAVAGFVLGGVGGLIVSSIFASSFFLILEIAENTRQVLRYYEPKVDGASR"
gene 92115..93281
/locus_tag="RPD_0077"
/db_xref="GeneID:4020532"
CDS 92115..93281
/locus_tag="RPD_0077"
/note="dapE-encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase (DapE), catalyzes the hydrolysis of
N-succinyl-L,Ldiaminopimelate L,L-SDAP to
L,L-diaminopimelate and succinate. It is a metalloprotease
containing dinuclear active sites. Its structure is
similar to the carboxypeptidase G2 from Pseudomonas sp.
strain RS-16 and the aminopeptidase from Aeromonas
proteolytica."
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_567218.1"
/db_xref="GI:91974559"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR005941"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:4020532"
/translation="MTSSRDALSIAQALLRCPSVTPADAGALGVLETLLKDAGFTAHR
VTFSEPGAADIDNLYARIGDGAPHLCFAGHTDVVPPGDADAWSHGAFSGDVEGGLLYG
RGAVDMKGGIACAVAAVLDHLAAHGGRPKGSISFLITGDEEDVAVNGTVKLLQWAADR
GETFDHCIVGEPSNVEAIGDTIKIGRRGSQSGMLIVDGLQGHVAYPHRASNPIPDIAA
LITALNDEPLDQGSAQFQPSNLEFTSVDVGNPATNVIPAQARAKFNIRFNDHHTQDSL
KALIEQRLAAACGNRIRARIEWLPSNADVFVTKPGNFTDLVTASIADVTGRTPDLNTG
GGTSDARFIAKYCPVVEFGLVGQTMHQIDERTPVADLDQLTAIYRGVLERYFKS"
misc_feature 92130..93275
/locus_tag="RPD_0077"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature 92136..93260
/locus_tag="RPD_0077"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature order(92334..92336,92433..92435,92538..92543,92625..92627,
93192..93194)
/locus_tag="RPD_0077"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature order(92685..92687,92718..92729,92745..92747,92751..92756,
92763..92768,92772..92777,92784..92786,92829..92831,
92835..92858,92877..92882,92904..92906,92910..92912,
93117..93119)
/locus_tag="RPD_0077"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene complement(93536..94498)
/locus_tag="RPD_0078"
/db_xref="GeneID:4020533"
CDS complement(93536..94498)
/locus_tag="RPD_0078"
/codon_start=1
/transl_table=11
/product="transposase, IS4"
/protein_id="YP_567219.1"
/db_xref="GI:91974560"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4020533"
/translation="MAQDSFIEALLPAGFGRNERLERISGLIDWDRLAVLIRKVRPGE
TGRPPYAPLAMFKALLLQQWYGLSDPGLEEALLDRVSFRRFCGFALDAQTPDETTLCR
FRNALQQAGLGDALFQEVLRQLEAAGYVLKTGTLIDATLVQSSGRTPPSGSTPREVES
RSSHDPQADWTRHGAGRRLFFGYKAHIAIDQGSGLIRARKLTGAKTYESEVADDLVLG
DEKAVYADKAYEKRARRQALKARGIKDRIQHRRNKHQKALPRWQAVRNKLIGRVRQAI
ERTFAQLKGRYGFTRMRYAGITANAFHLDLISIAYNLRTAAAIR"
misc_feature complement(94136..94363)
/locus_tag="RPD_0078"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
misc_feature complement(93560..94003)
/locus_tag="RPD_0078"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature complement(93644..>93961)
/locus_tag="RPD_0078"
/note="DDE superfamily endonuclease; Region: DDE_4;
cl15789"
/db_xref="CDD:211471"
gene complement(94698..95435)
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/db_xref="GeneID:4020534"
CDS complement(94698..95435)
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/EC_number="5.4.99.12"
/note="mediates pseudouridylation (positions 38, 39, 40)
at the tRNA anticodon region which contributes to the
structural stability"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="YP_567220.1"
/db_xref="GI:91974561"
/db_xref="InterPro:IPR001406"
/db_xref="GeneID:4020534"
/translation="MPRYKLTIEYDGAPFCGWQLQPVLPSVQGALEAAALATCGEAVR
VHGAGRTDAGVHALGQVAHLDIAKPFRADRLRDALNAHVRPYPVAVLSTEIVPDSFEA
RFSAIRRHYRYRIVNRRSNLALEIGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDT
ECQAASPEKTLDVLDVVRSGDCVDIITSARSYLHSQVRSMVGSLVWVGEGRWSADDLA
AALAARRRSACGPVAPPDGLYLVKVDY"
misc_feature complement(94701..95435)
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:178798"
misc_feature complement(94701..95420)
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature complement(order(95163..95177,95181..95189,95196..95198,
95409..95411))
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature complement(order(94842..94844,95280..95291))
/gene="truA"
/locus_tag="RPD_0079"
/gene_synonym="hisT"
/note="active site"
/db_xref="CDD:211337"
gene complement(95609..96541)
/gene="fmt"
/locus_tag="RPD_0080"
/db_xref="GeneID:4020535"
CDS complement(95609..96541)
/gene="fmt"
/locus_tag="RPD_0080"
/EC_number="2.1.2.9"
/note="modifies the free amino group of the aminoacyl
moiety of methionyl-tRNA(fMet) which is important in
translation initiation; inactivation of this gene in
Escherichia coli severely impairs growth"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_567221.1"
/db_xref="GI:91974562"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR005793"
/db_xref="InterPro:IPR005794"
/db_xref="GeneID:4020535"
/translation="MPLRLVFMGTPDFAVPTLLALSAYGHDIAAVYSREPKPAGRGMK
LQHSPVAQEAQRFGIPVLTPKTLKTDEALAEFRSHDADAAVVVAYGMILPQAILDAPR
LGCYNLHGSLLPRWRGAAPLNRAIMAGDAESGVMVMKMDAGLDTGDVAMAERIAITDA
MTVTDLHDSLARLGADLMVRAMAALERDQLQLTRQSEHGVTYAAKIDKAEAKIDFARP
AQAVLRHIHGLSPFPGAWCELPIDGEAVRVKILRCASATGGGAPGQVLDDRLTIACQD
GAIRVLQLQRAGKQPMQADEFLRGTPIAAGAVIV"
misc_feature complement(95615..96535)
/gene="fmt"
/locus_tag="RPD_0080"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature complement(95936..96535)
/gene="fmt"
/locus_tag="RPD_0080"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature complement(order(96107..96112,96119..96124,96128..96130,
96188..96190,96212..96223,96248..96250,96263..96286,
96500..96505,96515..96517))
/gene="fmt"
/locus_tag="RPD_0080"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature complement(order(96182..96190,96212..96217,96221..96223,
96272..96283,96413..96424,96428..96430,96440..96442,
96503..96505,96509..96514))
/gene="fmt"
/locus_tag="RPD_0080"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature complement(order(96107..96112,96119..96124,96221..96223,
96248..96250,96263..96271,96275..96277,96284..96286))
/gene="fmt"
/locus_tag="RPD_0080"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature complement(order(96107..96109,96215..96217,96221..96223))
/gene="fmt"
/locus_tag="RPD_0080"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature complement(95660..95893)
/gene="fmt"
/locus_tag="RPD_0080"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature complement(order(95666..95668,95672..95677,95681..95683,
95687..95689,95795..95797,95801..95803,95846..95848))
/gene="fmt"
/locus_tag="RPD_0080"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene complement(96621..97148)
/gene="def"
/locus_tag="RPD_0081"
/db_xref="GeneID:4020536"
CDS complement(96621..97148)
/gene="def"
/locus_tag="RPD_0081"
/EC_number="3.5.1.88"
/note="cleaves off formyl group from N-terminal methionine
residues of newly synthesized proteins; binds iron(2+)"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_567222.1"
/db_xref="GI:91974563"
/db_xref="InterPro:IPR000181"
/db_xref="GeneID:4020536"
/translation="MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPG
IGLAAIQIAEPVRLITMDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEY
YADVERPAVVRIRYTDLDGNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMV
VRKFEKAAKRGIKYV"
misc_feature complement(96705..97133)
/gene="def"
/locus_tag="RPD_0081"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature complement(order(96723..96725,96732..96737,96858..96866,
96996..96998,97011..97019))
/gene="def"
/locus_tag="RPD_0081"
/note="active site"
/db_xref="CDD:29602"
misc_feature complement(order(96732..96734,96858..96860,96996..96998,
97011..97013))
/gene="def"
/locus_tag="RPD_0081"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature complement(order(96723..96725,96735..96737,96861..96863))
/gene="def"
/locus_tag="RPD_0081"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 97298..98515
/locus_tag="RPD_0082"
/db_xref="GeneID:4020537"
CDS 97298..98515
/locus_tag="RPD_0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567223.1"
/db_xref="GI:91974564"
/db_xref="InterPro:IPR003798"
/db_xref="GeneID:4020537"
/translation="MNETLFYLGDAPVSIGAALFGASAMALLLLLAIVLVIAHGLQSG
SAAALAQARRASDLEQRLSGLIRFQSEANGRVDAMGRALAGRQAEMARAVSERLDTVT
HRVGQSMTQSTRHTMESLQALHERLGIIDRAHDNLTELTDQVTSLRDVLANKQARGAF
GQARMESIVQDGMPKGAYAFQYTLSTGKRPDCVVFLPDQRPLCIDAKFPLEAVTALRE
SRSDGEKKAASQRLRLDVMRHVDDIAAKYLIPGETQDTALMFVPSESVYAEIHDGFDD
VIQRAYRARIVLVSPSLLMLAIQVMQQILKDARMRDAADQIRTEVLSLGDDLARLRER
VTKLQTHFGQVNDDVRQILISADKIERRAVRIEELDFSAVEPSTGTQAPLAPEARDLF
ASRAFKIDEVASD"
misc_feature 97580..98416
/locus_tag="RPD_0082"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:111535"
gene 98724..100097
/locus_tag="RPD_0083"
/db_xref="GeneID:4020538"
CDS 98724..100097
/locus_tag="RPD_0083"
/codon_start=1
/transl_table=11
/product="major facilitator transporter"
/protein_id="YP_567224.1"
/db_xref="GI:91974565"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4020538"
/translation="MTAPDASSNPEPLPPVAPASTWREAMTVYLQPRVLIVLFLGFSS
GLPLALSGSTLLVWMRESGVDLGTIGLFALVGTPYTLKFIWAPLVDALHVPLLSRLFG
RRRGWLVISQLLLIGAILLLALTDPAHAPLFVAIGALLVAAASATQDIVVDAFRVESL
PENEQAAGMASYVAAYRIGMLISTAGVLFLVSAYEGIGLARSTAWMWGYVTMAGMVLI
GTVTALLATEPEQSRRAEAATSGESAFTRVTRAAIGAFSEFLGRTDALAVLAFVVLFK
FTDAFSGTMTAPFVIDLGFSRNDYAAIVKGVGLAATLVGGFAGGYLARRYTLTTSLWI
GAVLQALSNLAFAWLATVGVNQWALALAISVENFTGAIGTVIFVAYLSALCQNPLHTA
TQYALLTALSAVGRTYLSAGAGYVAQATGWPAFFMISVAVAAPSLVLLIWLQRRDHFA
ALGPVKV"
misc_feature 98799..100043
/locus_tag="RPD_0083"
/note="muropeptide transporter; Validated; Region: ampG;
PRK11010"
/db_xref="CDD:182898"
misc_feature 98832..100064
/locus_tag="RPD_0083"
/note="muropeptide transporter; Reviewed; Region: ampG;
PRK11902"
/db_xref="CDD:183369"
gene complement(100126..100554)
/locus_tag="RPD_0084"
/db_xref="GeneID:4020539"
CDS complement(100126..100554)
/locus_tag="RPD_0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567225.1"
/db_xref="GI:91974566"
/db_xref="GeneID:4020539"
/translation="MTDLILKPSMIFAAVLSLSAAPAYAQGTESRAALPKPMAMQVGD
VLNGELTAMRSRANGKGKKIPVYQLTSEPRRLPPPAGLCNLENGPETFQIVPAGDAQA
AQLKSHLGKQIALKVEAVACAEEAGQYSEAVVTKWSMVAK"
gene complement(100574..101179)
/gene="recR"
/locus_tag="RPD_0085"
/db_xref="GeneID:4020540"
CDS complement(100574..101179)
/gene="recR"
/locus_tag="RPD_0085"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_567226.1"
/db_xref="GI:91974567"
/db_xref="InterPro:IPR000093"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
/db_xref="GeneID:4020540"
/translation="MATAVAGPEIERLIQLLARLPGLGPRSARRAALHLIKKRDALMT
PLASALQVAIDKIEVCKSCGNIDTRNPCTVCTDPRRDPSIIVVVADVADLWALERASA
TNGRYHVLGATLSPLDGVGPDDLTIDALVARAHDPAVSEIILALNATVDGQTTAHYVT
DLLQEAGVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTLF"
misc_feature complement(100577..101164)
/gene="recR"
/locus_tag="RPD_0085"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature complement(100937..101053)
/gene="recR"
/locus_tag="RPD_0085"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature complement(100598..100900)
/gene="recR"
/locus_tag="RPD_0085"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature complement(order(100598..100606,100610..100612,
100616..100618,100631..100633,100637..100672,
100700..100702,100736..100738,100745..100747,
100751..100753,100757..100759,100880..100885,
100889..100897))
/gene="recR"
/locus_tag="RPD_0085"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
misc_feature complement(order(100727..100729,100733..100735,
100739..100741))
/gene="recR"
/locus_tag="RPD_0085"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature complement(100739..100741)
/gene="recR"
/locus_tag="RPD_0085"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
gene complement(101293..101613)
/locus_tag="RPD_0086"
/db_xref="GeneID:4020541"
CDS complement(101293..101613)
/locus_tag="RPD_0086"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567227.1"
/db_xref="GI:91974568"
/db_xref="InterPro:IPR004401"
/db_xref="GeneID:4020541"
/translation="MADFLGMMKQAAQLQSKMKAMQAELDQIEVEGSSGGGLVQVRMS
AKMEVRGVSIDPSLLKPDEGGVLEDLLVAAHADAHRKAEAAMQEKMQALTGGLGLPPG
LGLG"
misc_feature complement(101332..101613)
/locus_tag="RPD_0086"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:178904"
gene complement(101648..103522)
/locus_tag="RPD_0087"
/db_xref="GeneID:4020542"
CDS complement(101648..103522)
/locus_tag="RPD_0087"
/EC_number="2.7.7.7"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the tau chain serves as a
scaffold to help in the dimerizaton of the alpha,epsilon
and theta core complex; the gamma chain seems to interact
with the delta and delta' subunits to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunits gamma and tau"
/protein_id="YP_567228.1"
/db_xref="GI:91974569"
/db_xref="InterPro:IPR000862"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR012763"
/db_xref="GeneID:4020542"
/translation="MTDSGPPAIPSGDSEQTGLGLGAAPAGAYRVLARKYRPNSFEDL
IGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARALNYEMPDGSVKGPTI
HMPVHGVHCKAIMESRHMDVLEMDAASHTGVDDVRQINDSVRYAPASARYKVYIIDEV
HMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDLRRVEADVLMKH
LAGIAAKEGVEVEPEALGIIARAAEGSVRDSLSLFDQAIAHAAGLVRADQVRQMLGLA
DRTRVIELFDALARGDIASAFQEFRDQYDTGADPVVVLSDLAEFVNFVTRVKIVPATA
DNVAFGETERLRGRDFAAKLSMRVLSRMWQMLLKGIAEVQGATRPAAAAEMVLVRIAY
AADLPTPDEALRMLAQDGGSATPLPSGGGAAPRGASSPPVSAASVASAYAAPAAAAMP
PRSAPTMARGGADSMARPQISAPAAAPQQDAALKITTFPQLVALASEKRDVMTRMALE
ADVRLVRIDDGRLELALERTASRSLINDLGRKLEQWTGRRWTVIVSNEPGQPTLRSQS
EAQKNERERAAESDPRVREVLAKFPGAKFEVRRLATDLAEADAGIEDPAEPVDDDDES
"
misc_feature complement(102350..103438)
/locus_tag="RPD_0087"
/note="DNA polymerase III, subunit gamma and tau; Region:
dnaX_nterm; TIGR02397"
/db_xref="CDD:162839"
misc_feature complement(102911..103390)
/locus_tag="RPD_0087"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(103289..103312)
/locus_tag="RPD_0087"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(102956..102958,103049..103051,
103286..103309))
/locus_tag="RPD_0087"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(103046..103063)
/locus_tag="RPD_0087"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(102920..102922)
/locus_tag="RPD_0087"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(102305..102733)
/locus_tag="RPD_0087"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
misc_feature complement(101741..102070)
/locus_tag="RPD_0087"
/note="DNA polymerase III gamma and tau subunits C
terminal; Region: DUF3646; pfam12362"
/db_xref="CDD:152797"
gene complement(103759..103861)
/gene="ffs"
/locus_tag="RPD_R0002"
/db_xref="GeneID:4020543"
misc_RNA complement(103759..103861)
/gene="ffs"
/locus_tag="RPD_R0002"
/product="SRP RNA; RNA component of signal recognition
particle"
/db_xref="GeneID:4020543"
gene 103996..104481
/locus_tag="RPD_0088"
/db_xref="GeneID:4020544"
CDS 103996..104481
/locus_tag="RPD_0088"
/codon_start=1
/transl_table=11
/product="histidine triad (HIT) protein"
/protein_id="YP_567229.1"
/db_xref="GI:91974570"
/db_xref="InterPro:IPR001310"
/db_xref="GeneID:4020544"
/translation="MDVSGSVPATTQEPACQRADGIDMPSDWSLSSQLEKDTINIGDL
PLSRVLVIKDAHYPWLLLVPRRADAVEIIDLDEVEQAQLMTEISRVGRALKEITKCDK
LNIAALGNMVPQLHVHIIARRSSDAAWPRPVWGVMPPLPHDPEEVQQFISALRRKIWL
G"
misc_feature 104092..104367
/locus_tag="RPD_0088"
/note="HIT domain; Region: HIT; pfam01230"
/db_xref="CDD:201674"
misc_feature order(104176..104178,104329..104331,104341..104343,
104347..104349)
/locus_tag="RPD_0088"
/note="nucleotide binding site/active site [active]"
/db_xref="CDD:29586"
misc_feature order(104335..104337,104341..104343,104347..104355)
/locus_tag="RPD_0088"
/note="HIT family signature motif; other site"
/db_xref="CDD:29586"
misc_feature 104341..104343
/locus_tag="RPD_0088"
/note="catalytic residue [active]"
/db_xref="CDD:29586"
gene 104486..105418
/locus_tag="RPD_0089"
/db_xref="GeneID:4020545"
CDS 104486..105418
/locus_tag="RPD_0089"
/codon_start=1
/transl_table=11
/product="NUDIX hydrolase"
/protein_id="YP_567230.1"
/db_xref="GI:91974571"
/db_xref="InterPro:IPR000086"
/db_xref="GeneID:4020545"
/translation="MSSAFPLGQPAFVSNILDRAAHLRADDARLMAMEDRSDTRAYVV
HRDSLVVKHEDGGPRALLSIKEALALGANPGTIFLGLRDGAAVFGMGIGAAAIETLVT
RSDAGIAELRGMAMQGMLPEEQLSAIAMAKSMVNWHQRHGYCANCGQRTAMAQGGWKR
DCPACKAEHFPRTDPVVIMLVTSGDKCLLGRQKQFPVGMYSCLAGFVEAAETIEDAVC
REILEESGIRCADVRYYMTQPWPYPSSLMIGCTAIATTEDITIDFTELEDARWFSRDE
AAQMLNRQHPDGLVGPHPFAIAHHLVGRWLEQDT"
misc_feature 104597..105406
/locus_tag="RPD_0089"
/note="NTP pyrophosphohydrolases containing a Zn-finger,
probably nucleic-acid-binding [DNA replication,
recombination, and repair]; Region: NPY1; COG2816"
/db_xref="CDD:32645"
misc_feature 104600..104896
/locus_tag="RPD_0089"
/note="NADH pyrophosphatase-like rudimentary NUDIX domain;
Region: NUDIX-like; pfam09296"
/db_xref="CDD:204191"
misc_feature 104900..104995
/locus_tag="RPD_0089"
/note="NADH pyrophosphatase zinc ribbon domain; Region:
zf-NADH-PPase; pfam09297"
/db_xref="CDD:204192"
misc_feature 105008..105409
/locus_tag="RPD_0089"
/note="NADH pyrophosphatase, a member of the Nudix
hydrolase superfamily, catalyzes the cleavage of NADH into
reduced nicotinamide mononucleotide (NMNH) and AMP. Like
other members of the Nudix family, it requires a divalent
cation, such as Mg2+ or Mn2+, for...; Region:
NADH_pyrophosphatase; cd03429"
/db_xref="CDD:72887"
misc_feature order(105011..105013,105095..105103,105203..105205,
105212..105214,105218..105220,105224..105226)
/locus_tag="RPD_0089"
/note="putative NADH binding site [chemical binding];
other site"
/db_xref="CDD:72887"
misc_feature order(105098..105103,105107..105109,105143..105145,
105152..105157,105203..105205,105212..105214,
105218..105220,105224..105226)
/locus_tag="RPD_0089"
/note="putative active site [active]"
/db_xref="CDD:72887"
misc_feature 105098..105166
/locus_tag="RPD_0089"
/note="nudix motif; other site"
/db_xref="CDD:72887"
misc_feature order(105143..105145,105152..105157,105278..105280)
/locus_tag="RPD_0089"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72887"
gene 105415..106344
/locus_tag="RPD_0090"
/db_xref="GeneID:4020546"
CDS 105415..106344
/locus_tag="RPD_0090"
/codon_start=1
/transl_table=11
/product="PfkB"
/protein_id="YP_567231.1"
/db_xref="GI:91974572"
/db_xref="InterPro:IPR002139"
/db_xref="InterPro:IPR002173"
/db_xref="InterPro:IPR011611"
/db_xref="GeneID:4020546"
/translation="MTDKAKRKPRILCIGIPVRDLTFRVEAVPGRGNKVPASAYKEIA
GGNALNAGIGIARLGGAATMCGPMGDAGETAATFMFDKLGEEGIATDRLIHMPGLVTP
ISAVLVDPTGERTIVTFRDPKLWNVGLPSAETLLADCDAIMIESRCAGFATALCAEAI
RRGIPVVVDIDSAMSLNEGLLTASSHLIFSAEALHATAGINDDAEALKKIATLTHAFV
AVTRGPKGTLWLDADQNFQETPAFPVHSVDTLGAGDIFHGGFAVAFSEGQDIPSALRF
ASAAAALKCTRPGGAFACPDRAEVEAFLAAQPR"
misc_feature 105442..106338
/locus_tag="RPD_0090"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 105442..106302
/locus_tag="RPD_0090"
/note="Ribokinase-like subgroup B. Found in bacteria and
plants, this subgroup is part of the ribokinase/pfkB
superfamily. Its oligomerization state is unknown at this
time; Region: ribokinase_group_B; cd01945"
/db_xref="CDD:29367"
misc_feature order(105562..105564,106165..106167,106174..106176)
/locus_tag="RPD_0090"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29367"
misc_feature order(105982..105984,106075..106077,106159..106161,
106168..106173,106180..106182,106246..106248,
106255..106257)
/locus_tag="RPD_0090"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29367"
gene complement(106399..107100)
/locus_tag="RPD_0091"
/db_xref="GeneID:4020547"
CDS complement(106399..107100)
/locus_tag="RPD_0091"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567232.1"
/db_xref="GI:91974573"
/db_xref="GeneID:4020547"
/translation="MTLAARKDLRLSSQIIDPAILYFGTPVVLIGSCNDDDSFNLAPM
SSAWWVGQRCMLGLASNSKTTGNILRSGECVLNLPSSDLVGAVDRLARTTGSDPVPQG
KLHRGYRFEADKFGVSRLTSQKGDAVAAPRALECPVQIEARLMQAHPMAEEDVVWRGH
LVALELSVVRIHVHPSIMMDGQDDRIDPDKWRPLIMSFQQYYGLALGRLQHSVLGEIP
EAYYRPPSRPSQPAG"
misc_feature complement(106480..107067)
/locus_tag="RPD_0091"
/note="Conserved protein/domain typically associated with
flavoprotein oxygenases, DIM6/NTAB family [General
function prediction only]; Region: COG1853"
/db_xref="CDD:32038"
gene complement(107176..107604)
/locus_tag="RPD_0092"
/db_xref="GeneID:4020548"
CDS complement(107176..107604)
/locus_tag="RPD_0092"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567233.1"
/db_xref="GI:91974574"
/db_xref="InterPro:IPR009327"
/db_xref="GeneID:4020548"
/translation="MPSAAEMIARLKLQPHPEGGHFRETFRDPRCDASGRSFSTAIYF
LLASGERSHWHRIDAIEVWHYYAGAALALEIADADGHRAIRLGPDVAAGEQPQAIVPP
HAWQAAVTTGDWTLVGCTVAPGFAFEHFELAPPDWSPLRR"
misc_feature complement(107203..107595)
/locus_tag="RPD_0092"
/note="Cupin superfamily (DUF985); Region: Cupin_5;
pfam06172"
/db_xref="CDD:203400"
gene complement(107613..108380)
/locus_tag="RPD_0093"
/db_xref="GeneID:4020549"
CDS complement(107613..108380)
/locus_tag="RPD_0093"
/EC_number="3.1.2.6"
/codon_start=1
/transl_table=11
/product="hydroxyacylglutathione hydrolase"
/protein_id="YP_567234.1"
/db_xref="GI:91974575"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4020549"
/translation="MAADIRIVPCLTDNFGYLIHDPSSGATASIDAPEAAPLIAALEK
EGWKLTDILVTHHHGDHVGGVAELKKKYQCRVVAPHDANAKIADIDLRVEEGDVVRVG
GLSARVLETPGHTLDHISYVFDDDRALFAADTLFSIGCGRVFEGTYPMMWESLLKLRE
LPDDFKLYCGHEYTASNVKFALTIEPDNAALQARAKQVEQQRAAGQPTIPVTLGEEKQ
ANLFLRADVPSVAAAVGLPGESAADVFGELRERKNNS"
misc_feature complement(107619..108368)
/locus_tag="RPD_0093"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:207049"
misc_feature complement(107703..>108062)
/locus_tag="RPD_0093"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 108557..109321
/locus_tag="RPD_0094"
/db_xref="GeneID:4020550"
CDS 108557..109321
/locus_tag="RPD_0094"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_567235.1"
/db_xref="GI:91974576"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:4020550"
/translation="MTIDVVNLRDFYSNRLGLVARRLINRGIQTRWPDARGQRVLGLG
YPTPYLGLFRDDCERCIAFMPAAQGVLKWPTARATLSTLVEERALPLPDAAVDRILLV
HSLEMSEDPDALLREVWRVLAPSGRLLAVVPNRRGVWARSDNTPFGHGRPYSRSQISD
LLRRTWFTPVGWSEALFMPPLEQSWLLRSAPAWERVGAAASLPFAGVHVVEATKQVVR
PIQAKRERTRLIPALGPSLVPSPMQADDADLPARPR"
misc_feature <108812..109066
/locus_tag="RPD_0094"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature <108812..108952
/locus_tag="RPD_0094"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene complement(109382..110107)
/locus_tag="RPD_0095"
/db_xref="GeneID:4020551"
CDS complement(109382..110107)
/locus_tag="RPD_0095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567236.1"
/db_xref="GI:91974577"
/db_xref="GeneID:4020551"
/translation="MRNGQNNKRLRNRNSGSNNNNNNNNNRRGQNPMTRVFESNGPDI
KIRGTASHVAEKYVQLARDARSSGDPVAAENYYQHAEHYFRLIAAAQEQFRQNQPQQQ
QRVDNDMSDNDDEGEADYSNFGAEPGLVPVQQQPYQPREQPRAEQPQFAPREQPQPRE
HRPQPQFTPRAEQPQPSVEAVDRLPSFITGPQPQISPAAFEGAGGAERFPPRRRRRPH
VPRGEGAAAAAPVPAEDATPGNE"
misc_feature complement(109838..110014)
/locus_tag="RPD_0095"
/note="Domain of unknown function (DUF4167); Region:
DUF4167; pfam13763"
/db_xref="CDD:205936"
gene complement(110600..111478)
/locus_tag="RPD_0096"
/db_xref="GeneID:4020552"
CDS complement(110600..111478)
/locus_tag="RPD_0096"
/codon_start=1
/transl_table=11
/product="HemK family modification methylase"
/protein_id="YP_567237.1"
/db_xref="GI:91974578"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR004556"
/db_xref="InterPro:IPR007848"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4020552"
/translation="MTESPAAKTIAAARRAIGRRLKDAGIESAELDARLLIGEVTGLD
LTGLIVQAERLLAPDQAELLDGFVARRLAGEPVARILGAREFWGLPLTLSADTLVPRP
DTETVVEVALEYLRAEAPARPLILDIGAGSGAILLALLSECPAAFGVATDISLGALRA
AQSNAIRLGLSNRAGFAVCDYASALIGPFDLIVSNPPYIPARDIAALDREVRDHDPRR
ALDGGDDGLDAYRRIVPESMRLLRPGGALVVEFGQGQSDEVAALMRAAGLTVSGPPRR
DLGGIFRALMGRNLIG"
misc_feature complement(110675..111418)
/locus_tag="RPD_0096"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature complement(110612..111403)
/locus_tag="RPD_0096"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:181780"
gene complement(111521..112606)
/gene="prfA"
/locus_tag="RPD_0097"
/db_xref="GeneID:4020553"
CDS complement(111521..112606)
/gene="prfA"
/locus_tag="RPD_0097"
/note="recognizes the termination signals UAG and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF1; this protein is
similar to release factor 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 1"
/protein_id="YP_567238.1"
/db_xref="GI:91974579"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004373"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:4020553"
/translation="MSKLPEAKLDVLLAHHASLEAQLLGEVGASEYVRITRELSELNP
LVEAVKAYREVRDELGDVDALLEDPDTDSEMRAMAEAERDALDAHRAELIQEIRVALL
PKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGSMGGF
KEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIK
ADDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRS
RIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIA
GEALGELIDALTTEHQAAQLAAQGHAA"
misc_feature complement(111563..112600)
/gene="prfA"
/locus_tag="RPD_0097"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature complement(112070..>112339)
/gene="prfA"
/locus_tag="RPD_0097"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature complement(111644..111985)
/gene="prfA"
/locus_tag="RPD_0097"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(112658..114925)
/locus_tag="RPD_0098"
/db_xref="GeneID:4020554"
CDS complement(112658..114925)
/locus_tag="RPD_0098"
/codon_start=1
/transl_table=11
/product="PTSINtr with GAF domain, PtsP"
/protein_id="YP_567239.1"
/db_xref="GI:91974580"
/db_xref="InterPro:IPR000121"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR006318"
/db_xref="InterPro:IPR008279"
/db_xref="InterPro:IPR008731"
/db_xref="GeneID:4020554"
/translation="MRSTSGGPRVLLRRLRETMAEQVSAQERLDKIVVLIAANMVAEV
CSTYVLRVDNTLELYATEGLNREAVHQTVLNAHEGLVGLVASEATPLNLSDAQSHPAF
SFRPETGEEIYHSFLGVPILRAGNTLGVLVVQNRAKRTYVEEEVEALQTTAMVLAEMI
ASGELSALAQPGAEPAARHSIHKTGAILSDGIALGHVVLHEPRVVITNYIAEDLPKEI
KRLDAALAKLRADLDRLLERGDVADGGEHREVLEAYRMFANDHGWSHRLHEAVATGLT
AEAAVERVQSDTRARMLRSTDPYLRDRLHDLEDLGHRLMRQLVGQNHAPSREQLPDNA
ILIARSMGPAALLDYDRTRLRGLVLEEGTANSHVSIVARALGIAAVGEVPNAPGIADP
GDAIIVDATSGSIYVRPSAEVEAAYGERVRFRARRQAQYSALRDLACVTKDGQPIDLM
INAGLAIDLPHIDDTGSSGIGLFRTELQFMIGQSLPRSSDQLALYRTVLDAAGSKPVT
FRTLDIGGDKALPYMETVVEENPALGWRAIRLGLDRPGLLRSQIRALLRAGGGRSLRI
MFPMISEVAEFDAAKAIVERELTYLRQHGHTLPERVDVGTMVEVPALLYQLDELLKKV
DFISVGSNDLFQFLYAVDRGNSKVSDRFDTLSTPILRALRHIVRKAKAANRSVSLCGE
MASQPLSALALIAIGYRALSVSAVSHGPIKAMILEVDAAKAEAAILPLLDAPAGSVSI
RHKLAEFAEAHGLSL"
misc_feature complement(112661..114892)
/locus_tag="RPD_0098"
/note="Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms]; Region: PtsP;
COG3605"
/db_xref="CDD:33405"
misc_feature complement(114455..114850)
/locus_tag="RPD_0098"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:201875"
misc_feature complement(114017..114376)
/locus_tag="RPD_0098"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:203267"
misc_feature complement(113720..113938)
/locus_tag="RPD_0098"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(112769..113644)
/locus_tag="RPD_0098"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene complement(115231..116484)
/locus_tag="RPD_0099"
/db_xref="GeneID:4020555"
CDS complement(115231..116484)
/locus_tag="RPD_0099"
/EC_number="2.7.2.4"
/note="catalyzes the formation of 4-phospho-L-aspartate
from L-aspartate and ATP, in Bacillus, lysine sensitive;
regulated by response to starvation."
/codon_start=1
/transl_table=11
/product="aspartate kinase"
/protein_id="YP_567240.1"
/db_xref="GI:91974581"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR001341"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR005260"
/db_xref="GeneID:4020555"
/translation="MGRLVMKFGGTSVANIERIQNVARHVKREVDAGHEVAVVVSAMS
GKTNELVAWCREASPMHDAREYDAVVASGEQVTSGLLAIALQAVGIQARSWQGWQLPI
STSDAHASARITDIDGSEIIKRFGDRKEVAVIAGFQGINPETGRITTLGRGGSDTSAV
AIAAALKADRCDIYTDVDGVYTTDPRVVPKAKRLDKVAFEEMLELASQGAKVLQVRSV
ELGMVHNMPIFVRSSFDKPEDIDPHGTPPGTLICSEEIIMENHVVTGIAFSKDEAQIS
VRRIEDKPGVAASIFGPLADANINVDMIVQNVSEDGKTTDLTFTVPAADFARAKQTIT
SAQEEIGYARFDSETDVAKVSVIGSGMRSHAGVAAQAFAALAARNINIRAITTSEIKF
SVLIDAAYTELAVRTLHTLYGLDQV"
misc_feature complement(115240..116484)
/locus_tag="RPD_0099"
/note="aspartate kinase; Reviewed; Region: PRK06635"
/db_xref="CDD:180641"
misc_feature complement(115729..116478)
/locus_tag="RPD_0099"
/note="AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily
(AAK), AKii; this CD includes the N-terminal catalytic
aspartokinase (AK) domain of the lysine-sensitive
aspartokinase isoenzyme AKII of Bacillus subtilis 168, and
the lysine plus threonine-sensitive...; Region:
AAK_AKii-LysC-BS; cd04261"
/db_xref="CDD:58627"
misc_feature complement(order(115942..115947,115954..115959,
116452..116460,116464..116466))
/locus_tag="RPD_0099"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58627"
misc_feature complement(order(116263..116265,116344..116346,
116464..116466))
/locus_tag="RPD_0099"
/note="putative catalytic residues [active]"
/db_xref="CDD:58627"
misc_feature complement(order(115933..115935,116017..116019,
116344..116346,116362..116364))
/locus_tag="RPD_0099"
/note="putative Mg ion binding site [ion binding]; other
site"
/db_xref="CDD:58627"
misc_feature complement(order(116263..116265,116344..116346,
116359..116364))
/locus_tag="RPD_0099"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:58627"
misc_feature complement(115444..115671)
/locus_tag="RPD_0099"
/note="ACT domains of the lysine-sensitive aspartokinase
isoenzyme AKII of Bacillus subtilis (BS) strain 168 and
related proteins; Region: ACT_AKii-LysC-BS-like_1;
cd04913"
/db_xref="CDD:153185"
misc_feature complement(115555..115560)
/locus_tag="RPD_0099"
/note="putative allosteric regulatory site; other site"
/db_xref="CDD:153185"
misc_feature complement(115243..115431)
/locus_tag="RPD_0099"
/note="ACT domains of the lysine-sensitive, aspartokinase
(AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168
and related domains; Region: ACT_AKii-LysC-BS-like_2;
cd04936"
/db_xref="CDD:153208"
misc_feature complement(115429..115431)
/locus_tag="RPD_0099"
/note="putative allosteric regulatory residue; other site"
/db_xref="CDD:153208"
gene 116843..117604
/locus_tag="RPD_0100"
/db_xref="GeneID:4020556"
CDS 116843..117604
/locus_tag="RPD_0100"
/EC_number="2.1.1.64"
/note="Involved in ubiquinone biosynthesis"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_567241.1"
/db_xref="GI:91974582"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR001601"
/db_xref="InterPro:IPR003333"
/db_xref="InterPro:IPR010233"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4020556"
/translation="MALQSESTGPVSPSVDPAEIAKFSRLSAEWWDPTGKMAPLHRIN
PLRISFIRDAACRKFERNAKSLSCLSGLRMLDIGCGAGLLCEPFTRLGAQVIGIDPSA
TNIAAAKLHADKSHLAIDYRCTTVEEIDPRERFDIVMAMEVIEHVNDVPAFLGRCAAL
MKPTGIMLVATLNRNWKSFALAIVGAEYVMRWLPRGTHQWDKFVTPDELEQHLQGLGL
VVTEQSGLVFNPLADRWRLSPDMDVNYMVVAETAP"
misc_feature 116876..117592
/locus_tag="RPD_0100"
/note="bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional; Region: PRK05134"
/db_xref="CDD:179944"
misc_feature 117059..117349
/locus_tag="RPD_0100"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(117071..117091,117137..117142,117212..117220,
117263..117265)
/locus_tag="RPD_0100"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(117713..118528)
/locus_tag="RPD_0101"
/db_xref="GeneID:4020557"
CDS complement(117713..118528)
/locus_tag="RPD_0101"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567242.1"
/db_xref="GI:91974583"
/db_xref="GeneID:4020557"
/translation="MLRCLAAFTALCAALMSPASAEDGFRGSECLAMAQAPPRVMPAS
LRRLAAADQVLITYRGHSTYTIESPGGVMIATDYSGTYDTGRAPDVVTMNRAHATHYT
LSPDRNIAHVLHGWGEDGQPARVRLQFGDVLIRNVTTDIRRTIFGDGAGGMIKDGNSI
FIFEVAGLCIGHLGHLHTMLDDSHFAAIGRIDILMVPIDGSYTMSLDGISEITKRLRA
SVVLPMHRFMTPLDEFMQRIGKSFAIDQRGERSLRISRDTLPSAPTVIILRGV"
misc_feature complement(117854..118363)
/locus_tag="RPD_0101"
/note="Beta-lactamase superfamily domain; Region:
Lactamase_B_3; pfam13483"
/db_xref="CDD:205661"
gene 118681..119580
/locus_tag="RPD_0102"
/db_xref="GeneID:4020558"
CDS 118681..119580
/locus_tag="RPD_0102"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567243.1"
/db_xref="GI:91974584"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4020558"
/translation="MLSLASLWIPFTLVAAIGQVARNAMQRSLTGPLGTWGATNIRFL
FGFPFSIVFFVVVIVATGDTVAWPGLAFWPWLLLGALSQIAATGLMLAAMNERSFVVT
TAYLKTEAIQTAIFGFVFLGDHLGVLKVVAILIATIGVVITALRPGAARNLASLRPTL
LGLTAAAAFALSAVGFRGAIIVVPGVSFVTAATLTLVFALGVQTLVLTIYLLARAPQV
LRDILQLWKPSMLAGFTGALASQFWFLAFALTAAANVRTLALVEVLFAQAVAYYSFKQ
PLSGRELGGIALIVLGVALLVAA"
gene complement(119581..120015)
/locus_tag="RPD_0103"
/db_xref="GeneID:4020559"
CDS complement(119581..120015)
/locus_tag="RPD_0103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567244.1"
/db_xref="GI:91974585"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4020559"
/translation="MSATIWPWQVWALLSAVFAALTAIFAKVGVADINSDLATFIRTV
VVLVALAMVLSATGQFSVSGTITAKTWLFLVLSGLCTGASWLCYFRALTLGPASLVAP
IDKLSVVLVALFAFAFLGERPSGVHWLGIALIAAGAVIIAVK"
misc_feature complement(119632..119994)
/locus_tag="RPD_0103"
/note="Predicted membrane protein [Function unknown];
Region: COG2510"
/db_xref="CDD:32580"
gene complement(120224..120727)
/locus_tag="RPD_0104"
/db_xref="GeneID:4020560"
CDS complement(120224..120727)
/locus_tag="RPD_0104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567245.1"
/db_xref="GI:91974586"
/db_xref="InterPro:IPR009562"
/db_xref="GeneID:4020560"
/translation="MIRYNLRCECGHSFESWFQSSSAYDSQVRRKLVNCPACDSVKVE
KAIMAPQIVGKKGRGRAPEPAHEVAAGTAVAPQAAESPVAESATPLLLAQERELRTKL
KELRDYIVKTADNVGDSFPNEARKMHYGDIEHRPIFGEASPAEAKALIDEGIEVAPLP
VLPEDRN"
misc_feature complement(120227..120727)
/locus_tag="RPD_0104"
/note="Protein of unknown function (DUF1178); Region:
DUF1178; pfam06676"
/db_xref="CDD:148338"
misc_feature complement(120557..120727)
/locus_tag="RPD_0104"
/note="putative regulatory protein, FmdB family; Region:
CxxC_CxxC_SSSS; TIGR02605"
/db_xref="CDD:211756"
gene complement(120724..121599)
/locus_tag="RPD_0105"
/db_xref="GeneID:4020561"
CDS complement(120724..121599)
/locus_tag="RPD_0105"
/codon_start=1
/transl_table=11
/product="Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase"
/protein_id="YP_567246.1"
/db_xref="GI:91974587"
/db_xref="InterPro:IPR001110"
/db_xref="InterPro:IPR003010"
/db_xref="GeneID:4020561"
/translation="MTEVPFNAAMVQMRTGLLPGPSLEQATKLIREAAAAGADYVLTP
EVSNMMQLNREALFEHLADEADDASLKAYRDLARELNIHLHIGSLALRATPDRAVNRS
FLIDPSGAVLASYDKIHMFDIDLGNGESYRESTNYQPGESAVISDLPWGRIGLTICYD
VRFPALYRALAEAGASFLTVPSAFTRPTGEAHWHVLLRARAIENGCFVFAAAQCGLHE
NRRETYGHSLIVDPWGVVLAEGGVDPGFVMARIDPAAVAKARGKVPSLQHGRRFTVVD
AKHSPEHLHLVRGQT"
misc_feature complement(120787..121578)
/locus_tag="RPD_0105"
/note="nitrilase; Region: PLN02798"
/db_xref="CDD:178395"
misc_feature complement(120790..121578)
/locus_tag="RPD_0105"
/note="Nit1, Nit 2, and related proteins, and the
Nit1-like domain of NitFhit (class 10 nitrilases); Region:
nit; cd07572"
/db_xref="CDD:143596"
misc_feature complement(order(121051..121053,121114..121119,
121123..121128,121201..121203,121237..121239,
121249..121251,121300..121302,121465..121467))
/locus_tag="RPD_0105"
/note="putative active site [active]"
/db_xref="CDD:143596"
misc_feature complement(order(121126..121128,121249..121251,
121465..121467))
/locus_tag="RPD_0105"
/note="catalytic triad [active]"
/db_xref="CDD:143596"
misc_feature complement(order(120790..120792,120796..120801,
120808..120813,120901..120903,120991..120996,
121000..121008,121012..121017,121024..121029,
121093..121098,121102..121116,121123..121125,
121177..121185,121243..121248))
/locus_tag="RPD_0105"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143596"
gene complement(121596..121886)
/locus_tag="RPD_0106"
/db_xref="GeneID:4020562"
CDS complement(121596..121886)
/locus_tag="RPD_0106"
/codon_start=1
/transl_table=11
/product="glutaredoxin GrxC"
/protein_id="YP_567247.1"
/db_xref="GI:91974588"
/db_xref="InterPro:IPR002109"
/db_xref="InterPro:IPR011900"
/db_xref="GeneID:4020562"
/translation="MSAAIEIFTRPGCGYCGAAKSLLNRKKAAFTEYDVSVDPGFRVK
MDERAGPGATYPQIFIGSFHVGGCDDLYALDREGKLDALLAGELAAGEKAIS"
misc_feature complement(121659..121874)
/locus_tag="RPD_0106"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature complement(order(121722..121727,121734..121736,
121842..121850,121857..121859))
/locus_tag="RPD_0106"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature complement(order(121839..121841,121848..121850))
/locus_tag="RPD_0106"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene complement(121938..122756)
/locus_tag="RPD_0107"
/db_xref="GeneID:4020563"
CDS complement(121938..122756)
/locus_tag="RPD_0107"
/codon_start=1
/transl_table=11
/product="phosphoribosyltransferase"
/protein_id="YP_567248.1"
/db_xref="GI:91974589"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR002375"
/db_xref="GeneID:4020563"
/translation="MQAEAITASGAKADGGVLFKAFGAVRRVWTRAAHLALDVALPTL
CVACREPVAGDGLCAPCWSQLSFIAPPYCEKLGIPFVYDPGPGLLSMQAIADPPAYAR
ARAAVRYDEVAKTLVHALKFHDRVDLAPTMGRWMAHAGQPLLADADLLIPVPLHWRRG
FSRRYNQSGALARAIGRQAGLPLAIEALKRIRPTAHQIGLSRAERAANVQGAFKVPPE
CKAEVQGRRIVLVDDVLTSGATVDACARALLRAKARSVDVLVFARVVDTLKSPI"
misc_feature complement(121965..122654)
/locus_tag="RPD_0107"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:31242"
misc_feature complement(121965..122363)
/locus_tag="RPD_0107"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(121965..121967,122037..122051,
122055..122063,122280..122282,122295..122297))
/locus_tag="RPD_0107"
/note="active site"
/db_xref="CDD:206754"
gene 122868..123170
/locus_tag="RPD_0108"
/db_xref="GeneID:4020564"
CDS 122868..123170
/locus_tag="RPD_0108"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567249.1"
/db_xref="GI:91974590"
/db_xref="GeneID:4020564"
/translation="MSEPDDKSADSITYVDIPTAPHVYFDIAPAHGVMANGVEIELAA
RTLNPLADGTVEVKFVTTARLRCSQAGAQHLRNALDAVLKMIEAAQQSPAAASKLN"
gene 123232..124065
/locus_tag="RPD_0109"
/db_xref="GeneID:4020565"
CDS 123232..124065
/locus_tag="RPD_0109"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_567250.1"
/db_xref="GI:91974591"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:4020565"
/translation="MTDVAPLLFDRSLLAARLARARTLGPASFLLDRVADEMGERLHA
VLRDFKAIADIWTPGDALPAERFPGITRVAIDRSGDEALRLPPGSLDLAVSALALQFA
NDLPGVLAQIRRALKPDGLLLAALTGGDTLTELRQAFAAAEAEIEGGVSPRVAPTADL
RDLGALLQRAGFALPVTDIDRVVVRYDHAFALMQDLRRMGATNVLVERRRTPLRRATL
LRMADIYAERFADPDGRIRATFEIVWLSGWSPHESQQQPLKPGSAKASLEQAVRGNQP
K"
misc_feature <123466..123975
/locus_tag="RPD_0109"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(124127..124528)
/locus_tag="RPD_0110"
/db_xref="GeneID:4020566"
CDS complement(124127..124528)
/locus_tag="RPD_0110"
/codon_start=1
/transl_table=11
/product="NUDIX hydrolase"
/protein_id="YP_567251.1"
/db_xref="GI:91974592"
/db_xref="InterPro:IPR000086"
/db_xref="GeneID:4020566"
/translation="MKLLLVVAVALIDADNRVLIAQRPKHKQLGGLWEFPGGKLDPGE
RPEAALIRELDEELGITVKEACLAPLTFASHAYEDFHLLMPLYVCRRWEGLVMPREGQ
ELAWVRPNKLRDYPMPPADIPLIPPLIELLM"
misc_feature complement(124184..124495)
/locus_tag="RPD_0110"
/note="The MutT pyrophosphohydrolase is a prototypical
Nudix hydrolase that catalyzes the hydrolysis of
nucleoside and deoxynucleoside triphosphates (NTPs and
dNTPs) by substitution at a beta-phosphorus to yield a
nucleotide monophosphate (NMP) and inorganic...; Region:
MutT_pyrophosphohydrolase; cd03425"
/db_xref="CDD:72883"
misc_feature complement(order(124229..124231,124283..124285,
124358..124363,124370..124372,124406..124408,
124412..124417))
/locus_tag="RPD_0110"
/note="active site"
/db_xref="CDD:72883"
misc_feature complement(order(124283..124285,124289..124291,
124412..124417))
/locus_tag="RPD_0110"
/note="8-oxo-dGMP binding site [chemical binding]; other
site"
/db_xref="CDD:72883"
misc_feature complement(124349..124417)
/locus_tag="RPD_0110"
/note="nudix motif; other site"
/db_xref="CDD:72883"
misc_feature complement(order(124358..124363,124370..124372))
/locus_tag="RPD_0110"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:72883"
gene complement(124701..125942)
/gene="argJ"
/locus_tag="RPD_0111"
/db_xref="GeneID:4020567"
CDS complement(124701..125942)
/gene="argJ"
/locus_tag="RPD_0111"
/EC_number="2.3.1.1"
/EC_number="2.3.1.35"
/note="bifunctional arginine biosynthesis protein ArgJ;
functions at the 1st and 5th steps in arginine
biosynthesis; involved in synthesis of acetylglutamate
from glutamate and acetyl-CoA and ornithine by
transacetylation between acetylornithine and glutmate"
/codon_start=1
/transl_table=11
/product="bifunctional ornithine
acetyltransferase/N-acetylglutamate synthase protein"
/protein_id="YP_567252.1"
/db_xref="GI:91974593"
/db_xref="InterPro:IPR002813"
/db_xref="GeneID:4020567"
/translation="MSSSVSPLAPTNVPTLPDLAGVRLATAAAGIRYKGRTDVLLVAL
DPGTAVAGVFTKSKCPSAPVEWCRDKLKGGSARVLVVNSGNANAFTGKTGRQATTLTA
SIASKAIGCKPAEVFLASTGVIGEPLDATKFDGVLGKLAETAQPGGWMEAARAIMTTD
TFPKVATATVKIGKTKVTINGMAKGAGMIAPDMATMLSFVFTDAPLSASCLQALLKAG
VADTFNAVTIDGDTSTSDTLLAFATGAAAKAGAPKISRASDPRLKAFVKAFNAVLADL
AEQVARDGEGARKLVEIIVDGAKTPASARKIAMSIANSPLVKTAIAGEDANWGRVVMA
VGKAGEPADRDKLSISFNGIRVAKSGARDPSYNEAEVSAAMKKPEIQIKVSLGLGKGR
DRVLTCDLTKAYVEINGDYRS"
misc_feature complement(124704..125885)
/gene="argJ"
/locus_tag="RPD_0111"
/note="Ornithine acetyltransferase (OAT) family; also
referred to as ArgJ. OAT catalyzes the first and fifth
steps in arginine biosynthesis, coupling acetylation of
glutamate with deacetylation of N-acetylornithine, which
allows recycling of the acetyl group in...; Region: OAT;
cd02152"
/db_xref="CDD:73147"
misc_feature complement(order(124737..124745,124872..124874,
124926..124937,124944..124949,124953..124964,
124968..124970,124974..124979,124983..124988,
124995..125003,125247..125258,125367..125369,
125379..125381,125568..125573,125676..125678,
125763..125777))
/gene="argJ"
/locus_tag="RPD_0111"
/note="heterotetramer interface [polypeptide binding];
other site"
/db_xref="CDD:73147"
misc_feature complement(order(124704..124709,124719..124721,
125358..125360,125382..125384,125391..125393,
125466..125471,125577..125582))
/gene="argJ"
/locus_tag="RPD_0111"
/note="active site pocket [active]"
/db_xref="CDD:73147"
misc_feature complement(125358..125363)
/gene="argJ"
/locus_tag="RPD_0111"
/note="cleavage site"
/db_xref="CDD:73147"
gene complement(126213..126722)
/locus_tag="RPD_0112"
/db_xref="GeneID:4020568"
CDS complement(126213..126722)
/locus_tag="RPD_0112"
/codon_start=1
/transl_table=11
/product="OsmC-like protein"
/protein_id="YP_567253.1"
/db_xref="GI:91974594"
/db_xref="InterPro:IPR003718"
/db_xref="GeneID:4020568"
/translation="MDAATLRATQAPIKERYKSDPDAALITLTAKGSVDSDGLTCKVE
TGRALATAGLHPATGGSGLELCSGDMLLEALVACAGVTLKSVATAIEVPLTRGDVVAE
GDLDFRGTLGIDKETPVGFREIRLRFDVGTDAPQDKLDLLLKLTERYCVVYQTIKNGP
KVSVSLERV"
misc_feature complement(126228..126545)
/locus_tag="RPD_0112"
/note="OsmC-like protein; Region: OsmC; pfam02566"
/db_xref="CDD:202287"
gene complement(126781..127566)
/locus_tag="RPD_0113"
/db_xref="GeneID:4020569"
CDS complement(126781..127566)
/locus_tag="RPD_0113"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567254.1"
/db_xref="GI:91974595"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020569"
/translation="MLVLDGLDKTYPNGVHALERFSAQIQLGEIIAIIGGSGCGKSTL
LRAIAGLDRASAGAITLDGETIAAPHPKIGIIFQEPRLLPWLSVADNIGFGLDGVPRR
QRAGRVAAALSRVGLSDKAKAWPRELSGGQAQRVAIVRALVPQPEVLLLDEPFSALDA
FTRRDLQDHLLDLWADTRPTLILVTHDVEEAVVLADRVLVMRPRPGRLFEEIAVDLAR
PRDRNSPLFETLRHRVYSSLDRSLDLAQPGAEAKVNVGDAMWW"
misc_feature complement(126853..127566)
/locus_tag="RPD_0113"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature complement(126919..127563)
/locus_tag="RPD_0113"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(127441..127464)
/locus_tag="RPD_0113"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(127009..127011,127108..127113,
127333..127335,127438..127446,127450..127455))
/locus_tag="RPD_0113"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(127333..127344)
/locus_tag="RPD_0113"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(127156..127185)
/locus_tag="RPD_0113"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(127108..127125)
/locus_tag="RPD_0113"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(127090..127101)
/locus_tag="RPD_0113"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(127003..127023)
/locus_tag="RPD_0113"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(127566..128426)
/locus_tag="RPD_0114"
/db_xref="GeneID:4020570"
CDS complement(127566..128426)
/locus_tag="RPD_0114"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport systems
inner membrane component"
/protein_id="YP_567255.1"
/db_xref="GI:91974596"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR001958"
/db_xref="GeneID:4020570"
/translation="MAMTLETPVLQRSDAIEPADGARAPRRAPRWRGPLLGLLLPLTI
ALGWELLVHFGYSNGRLVPPPSKVFAIIAELAKSGELSRHIVATVGRVASGFGLGVLA
GTVLGAVSGYWGLARQLLDPTVQALRAIPSIAWVPLFILWLGIFETSKVALIAVGVFF
PVYLGVMGAIRSVDRKIVEVGRAFRLSGPAMIRRILLPAVLPAYVVALRVGLGLGWMF
VVAAEFMGASEGLGFLLIDGQQLGKPAQIVAAIVIFALLGKTTDWLIEIASAPLLRWQ
DAFGRHEGEA"
misc_feature complement(127590..128285)
/locus_tag="RPD_0114"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(127656..128093)
/locus_tag="RPD_0114"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(127656..127658,127665..127670,
127674..127679,127686..127691,127719..127724,
127755..127760,127767..127778,127797..127799,
127806..127811,127851..127853,127902..127904,
127911..127916,127926..127928,127932..127937,
127944..127946,127950..127952,127956..127961,
128007..128009,128013..128018,128025..128054,
128058..128069))
/locus_tag="RPD_0114"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(127761..127778,128007..128051))
/locus_tag="RPD_0114"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(127689..127691,127719..127721,
127728..127730,127758..127760,127974..127976,
128007..128009))
/locus_tag="RPD_0114"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(127830..127832,127842..127847,
127863..127901))
/locus_tag="RPD_0114"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(128620..129606)
/locus_tag="RPD_0115"
/db_xref="GeneID:4020571"
CDS complement(128620..129606)
/locus_tag="RPD_0115"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein,
aliphatic sulfonates"
/protein_id="YP_567256.1"
/db_xref="GI:91974597"
/db_xref="InterPro:IPR001638"
/db_xref="InterPro:IPR010067"
/db_xref="GeneID:4020571"
/translation="MSNISRRAITALIAAAAFLPGVLPVVASAADKPKEIRIDWATYN
PVSIVLKQQGLLEKEFAKDGISVVWVQSAGSNKALEFLNAGSIDFGSTAGSAALVARI
NGNPIKSVYVYSRPEWTALVTAKDSKIASVADLKGKRVAVTRGTDPHIFLVRALLDAG
LSQNDITPVLLQHADGKAALIRGDVDAWAGLDPMMAQAEVEEGAKLFFRKPEANTWGI
LNVREQFLKDNPDLVRRVLAVYEDARKYAVANTDEVKKAFIGVTKLPETVVDKQLKER
TELTHSRIGAPQRDSILAAGLALQQAGVIQSSVDVKATLDQLIDDQVPLPTN"
misc_feature complement(128644..129501)
/locus_tag="RPD_0115"
/note="ABC transporter, substrate-binding protein,
aliphatic sulfonates family; Region: SsuA_fam; TIGR01728"
/db_xref="CDD:130789"
misc_feature complement(128872..129441)
/locus_tag="RPD_0115"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(129034..129036,129166..129168,
129307..129309,129385..129387))
/locus_tag="RPD_0115"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(129055..129057,129073..129075,
129085..129087))
/locus_tag="RPD_0115"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(128953..128961)
/locus_tag="RPD_0115"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 129849..132650
/locus_tag="RPD_0116"
/db_xref="GeneID:4020572"
CDS 129849..132650
/locus_tag="RPD_0116"
/EC_number="2.7.7.59"
/note="catalyzes the uridylylation or deuridylylation of
the PII nitrogen regulatory protein"
/codon_start=1
/transl_table=11
/product="PII uridylyl-transferase"
/protein_id="YP_567257.1"
/db_xref="GI:91974598"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR010043"
/db_xref="GeneID:4020572"
/translation="MDKVATPPHRPAGDERFDTQRITAEIAVLAAQHGGNDQAFRNAL
AQLMKAELAKARAEAEAQLLRDRHGRRCAERLCFVKDEIIRLLFMAATKYLYNSPTPS
SSERMSVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVVLYSLWDIGLKVGH
ATRSVDECIRQARADMTIRTAILETRFLTGDKALYAELVERFDKEVVEGTAAEFVTAK
LAEREERHRRSGQSRYLVEPNVKDGKGGLRDLHTLFWIAKYVYRVRETSELLERGVFD
AIEFRTFRRCEDFLWSVRCNLHFLTRRAEERLSFDLQREIGVRLGYTSHPGMQDVERF
MKHYFLIAKEVGNLTAILCAKLEDQQAKPAPALSRMMARLRPGATRRRVPESDDFVID
NNRINLAAPDVFKHDPVNLIRIFRLAQKNSLAFHPDAMRTVTRSLALINAQLRDDPEA
NRLFIEILTSDNSEPVLRRMNETGVLGRFIRAFGRIVSMMQFNMYHSYTVDEHLLRCV
GNLQEIERGGNDEFMLSSDLTRRIRPDHRAVLYVAVLLHDIAKGQPEDHSTAGAKVAR
RLCPRFGFNAADTELIAWLIEKHLVMSTVAQSRDLSDRKTIENFAAVVESVEQMKLLT
ILTTADIRGVGPGVWNGWKAQLLRTLYYETEPVLTGGFSEVNRAERIRAAQAEFRAAF
TEWPEAELDAYVARHYPAYWLKVELARKLRHARFLRASEQAGNKLAVNVGFDEARGVT
ELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISIRREYDRDEDEGR
RATRIGEIIEEVLEGKLRLPEAVARRATSSKTKLRAFVVEPEISINNNWSDRYTVIEV
SGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPTRQAAI
KRALVHLLANGDAEQKPAA"
misc_feature 129852..132647
/locus_tag="RPD_0116"
/note="PII uridylyl-transferase; Provisional; Region:
PRK05092"
/db_xref="CDD:179932"
misc_feature 130050..130454
/locus_tag="RPD_0116"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(130221..130223,130227..130229,130305..130307)
/locus_tag="RPD_0116"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature 130488..130907
/locus_tag="RPD_0116"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:149407"
misc_feature 131415..>131618
/locus_tag="RPD_0116"
/note="HD domain; Region: HD; pfam01966"
/db_xref="CDD:202067"
misc_feature 132063..132281
/locus_tag="RPD_0116"
/note="ACT domains are commonly involved in specifically
binding an amino acid or other small ligand leading to
regulation of the enzyme; Region: ACT; cl09141"
/db_xref="CDD:208988"
misc_feature 132402..132614
/locus_tag="RPD_0116"
/note="C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_ACR-UUR-like_2; cd04899"
/db_xref="CDD:153171"
gene 132778..133347
/locus_tag="RPD_0117"
/db_xref="GeneID:4020573"
CDS 132778..133347
/locus_tag="RPD_0117"
/codon_start=1
/transl_table=11
/product="putative threonine efflux protein-like"
/protein_id="YP_567258.1"
/db_xref="GI:91974599"
/db_xref="InterPro:IPR001123"
/db_xref="GeneID:4020573"
/translation="MTTQMSYEAFVLTSLLILLTPGPTNTLLAASGAAMGVRKALWLA
LAEALGYSIAISLFVAAAGALEDVPIALPLLKAVAAGWLLFSAVQLWTRPATPDRADQ
RGAFSRVCVTTMLNPKAMLVGTVIIPDVTIGQAQAVLTFVVLSSVAGAGWIVSGAALP
AGLRRYSFKSAAVIIAAFSFAAAASAVQG"
misc_feature 132790..133284
/locus_tag="RPD_0117"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene complement(133645..135261)
/locus_tag="RPD_0118"
/db_xref="GeneID:4020574"
CDS complement(133645..135261)
/locus_tag="RPD_0118"
/codon_start=1
/transl_table=11
/product="HWE histidine kinase"
/protein_id="YP_567259.1"
/db_xref="GI:91974600"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR011102"
/db_xref="GeneID:4020574"
/translation="MQPPDYTFDRERLAALSRFGILDTPPERGFDDVVELTTLICETP
VALVSFVTDDRQWFKARVGFDACQTDLNSSVCAHALIEPDLLVVPDLTIDERTKYNPL
VTGQPFIRFYAGAPLRTAGGHVLGSLCAIDTKARPGGLTAAQTSALRNLGRQVVAQLE
LRHAVAQRDALLTEQKEAEIRRNGLLEIGDRLRDATSVSEMTRAAAAVVGETLGVSRA
AFGRFDEAGEYVEVEPDWTADGVVSAAGRHRLADYGPNLLRGVLNGQALVVTDVTTDP
ATAGHTEALLRLDIRALVNIPVVEHGRAVAMLIVHARQPRSWSPETLTYLRNIADRIE
MGVSRLRAEAQQRILNSELSHRMKNTMALVQAVASQTLKSVPDKAPVKAFSDRLLALS
MAHDVLLQQDWRSAQVRNIVDAAICTFNEVGRFDISGEQVTLGSRAALSLALLLHELT
TNAVKYGALSNELGRVQIAWRVETTDGDAGFRLRWNETGGPRIDPPSRRGFGSRLLGM
GLSGTGDAALNYHRSGLEVEFTASLAELQA"
misc_feature complement(134752..135234)
/locus_tag="RPD_0118"
/note="FOG: GAF domain [Signal transduction mechanisms];
Region: FhlA; COG2203"
/db_xref="CDD:32385"
misc_feature complement(134785..135174)
/locus_tag="RPD_0118"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:201875"
misc_feature complement(134263..134679)
/locus_tag="RPD_0118"
/note="GAF domain; Region: GAF_2; pfam13185"
/db_xref="CDD:205366"
misc_feature complement(134257..134655)
/locus_tag="RPD_0118"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:201875"
misc_feature complement(133654..134247)
/locus_tag="RPD_0118"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature complement(133972..134208)
/locus_tag="RPD_0118"
/note="HWE histidine kinase; Region: HWE_HK; smart00911"
/db_xref="CDD:197979"
gene complement(135398..138127)
/locus_tag="RPD_0119"
/db_xref="GeneID:4020575"
CDS complement(135398..138127)
/locus_tag="RPD_0119"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase with PAS/PAC"
/protein_id="YP_567260.1"
/db_xref="GI:91974601"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020575"
/translation="MRLSMRLTLVMTTLVLCAVAAVGILTYYNVGRAVVPAGLTRLAD
RAEARLGAFDGILRLLQLEILAARTFPPHQGLVRARINGGLDPQDDLTEARWLRRLGD
AYLGQMSVKSDIVRFSLVSADGGRELLRVDRSGPGGDIRVVPDDKLERVGQELFDRTI
ALSEGEVYTSPIHAGPGNSGDDDLAPMVSIATPLRMPEGEPFGMLVLDFDLRPTFERI
RASPDNNTKAYFVDAGGPYLLDLLDGRVIPSRPRGQWQDDYPDLAKALGDKPGAATVL
TAPDGARVAAAIAIAPLVGRLRVGVIETEAFERIIAPATALRQTVVTVALFAAGVAVL
LSALLSRSLAKPLVQITAAVDDFASTGRVAMPRGLSGETKTLAAAFEHMAAEIDTTTT
ALRAKSEALDKIVASMADAVLMLDAEGRRVFANPTFFALFGDIAEIGSERWRQHYQGL
RPDGVTPIPDDETPSARARRGESFDNLDVVLRRVGHSQLVHLAASGRPIETASGAFDG
AVVVYRNVTALKETERQLRQAQKMQAIGQLTGGVAHDLNNILTVLTGGIEILADGVSD
RPALKDVAVMVDQAVSRASDLTNGLLSFARKQPLQPRSIDVNALMQETARLLRATFGS
HIEIAFEPTPGLRSALADPSQLSGALINLAINARDAMPGGGKLLLEAGNIDLDQAYAD
HNDEVAAGRYVVLMVTDTGTGIPAAIRDRVFEPFFTTKALGEGTGLGLSMVYGFVKQS
GGHIAIYSEEGVGTTIRLYLPSADPKNSPGDAAAPQQAQGGRESILLIEDDVLVRSYV
VTDLAALGYTVHAAATAAQAMAMVYDELEFDLLFTDVMLAGSINGYQLADELRKYRPD
LKVLLTSGYTGNMLRLQGGHEDGTPFLEKPYRRAELARMLRLALDGKAPSSPT"
misc_feature complement(135845..136918)
/locus_tag="RPD_0119"
/note="Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms]; Region: NtrB;
COG3852"
/db_xref="CDD:33642"
misc_feature complement(136340..136534)
/locus_tag="RPD_0119"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(136355..136357,136367..136369,
136376..136378,136388..136390,136397..136399,
136409..136411,136460..136462,136469..136471,
136481..136483,136490..136492,136502..136504,
136514..136516))
/locus_tag="RPD_0119"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(136496..136498)
/locus_tag="RPD_0119"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(135848..136183)
/locus_tag="RPD_0119"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(135860..135862,135866..135871,
135884..135886,135890..135892,135938..135949,
136016..136021,136025..136027,136031..136033,
136037..136039,136151..136153,136160..136162,
136172..136174))
/locus_tag="RPD_0119"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(136160..136162)
/locus_tag="RPD_0119"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(135941..135943,135947..135949,
136019..136021,136025..136027))
/locus_tag="RPD_0119"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(135467..135772)
/locus_tag="RPD_0119"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(135470..135475,135482..135484,
135539..135541,135599..135601,135626..135628,
135758..135763))
/locus_tag="RPD_0119"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(135467..>135658)
/locus_tag="RPD_0119"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(135626..135628)
/locus_tag="RPD_0119"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(135599..135607,135614..135619))
/locus_tag="RPD_0119"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(135467..135475)
/locus_tag="RPD_0119"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(138274..138702)
/locus_tag="RPD_0120"
/db_xref="GeneID:4020576"
CDS complement(138274..138702)
/locus_tag="RPD_0120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567261.1"
/db_xref="GI:91974602"
/db_xref="GeneID:4020576"
/translation="MTGYIDPTKEVFAQFRENDRDGPIHMLNLVRLKPRASYPDGREA
TGAEAYAAYGRDSLSVFSRLGGRVVWQGAFELMLIGPQQERWDHVFIAEYPGVSAFVE
MIRDPVYREAVKHRQAAVEDSRLIRLKPIPAGEGFGQIPE"
gene 138971..140191
/locus_tag="RPD_0121"
/db_xref="GeneID:4020577"
CDS 138971..140191
/locus_tag="RPD_0121"
/codon_start=1
/transl_table=11
/product="extracellular ligand-binding receptor"
/protein_id="YP_567262.1"
/db_xref="GI:91974603"
/db_xref="InterPro:IPR001828"
/db_xref="GeneID:4020577"
/translation="MKSLYRAAAAAVAAIALTAAPAAAQKKYDTGATDTEIKIGQTVP
FSGPASAYAGIGKTQAAYMRMINDSGGINGRKINLIQYDDAYSPPKAVEQVRKLVEGD
EVLLTFQIIGTPSNAAVQKYLNGKKVPQLLASTGATRFTDPKSFPWTMGYNPNYQTEA
RIYARYILKNHPNAKIGIMYQNDDLGRDYLAGLKAGLGDKAAAMIVAETSYELSDPTV
DSQIVKLKAAGVDLFFNASTPKFAAQAIKKVADLDWRPIHILDINASPVSSTLKPAGL
DISKGIISVNYGKDPADPQWKDDPGVAKYLAFMDKYYPEGDKMSTINTYGYSTAQLLV
TILKQCGDDLTRDNVMKQAANLKNVTGDLSLPGMVINTSPTDYRINKQLQMMKFNGER
WELFGQIIEDDQAM"
misc_feature 139061..140149
/locus_tag="RPD_0121"
/note="Type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type active
transport systems that are predicted to be involved in
uptake of amino acids, peptides, or inorganic ions;
Region: PBP1_ABC_ligand_binding_like_8; cd06343"
/db_xref="CDD:107338"
misc_feature 139076..140041
/locus_tag="RPD_0121"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature order(139301..139309,139370..139378,139523..139525,
139682..139684,139757..139759)
/locus_tag="RPD_0121"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107338"
gene 140396..140815
/locus_tag="RPD_0122"
/db_xref="GeneID:4020578"
CDS 140396..140815
/locus_tag="RPD_0122"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567263.1"
/db_xref="GI:91974604"
/db_xref="GeneID:4020578"
/translation="MHLVVCTGCREDVAQLIGNQIGSVDRWFEQRARHFVQNATDRLQ
RIGVEWRGGEYDRMRVTSGAPQRGESTMRTESNRYFTIEQLEELAVAKYIEAALMPEG
GEREELLQEAKRFASRARMKSWLMGEIGITPPRREYH"
gene complement(140960..141211)
/locus_tag="RPD_0123"
/db_xref="GeneID:4020579"
CDS complement(140960..141211)
/locus_tag="RPD_0123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567264.1"
/db_xref="GI:91974605"
/db_xref="GeneID:4020579"
/translation="MNRMQKTAEEIEALLLQDVRQQRHCGKVEAIRIRPCEPDEDTNG
ANWKVASVDPGQASREFAGAAVMIAMDRLQREVSAFPWD"
gene 141403..143565
/locus_tag="RPD_0124"
/db_xref="GeneID:4020580"
CDS 141403..143565
/locus_tag="RPD_0124"
/EC_number="2.4.1.129"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 1A"
/protein_id="YP_567265.1"
/db_xref="GI:91974606"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR011816"
/db_xref="GeneID:4020580"
/translation="MALGKKKAGERREPKFGFAESLAHLRLGPQDRVSVADDDRPKKP
KAQAGKSGGGGRGKSRGKSRKKGGLRSLVTRTVYWTAVAGIWAVLAVVGIMVWVGAHL
PPIQSLEIPKRPPTITIVGADGSQLAVRGEMAGTNVSLKDLPPYLPKAFIAIEDRRFY
SHFGVDPMGIARAAVANVMHRGVSQGGSTLTQQLAKNLFLTQDRTLTRKLQEVELALW
LERKHAKAEILELYLNRVYFGSGAYGVEAAARKYFGKSAKEVSLVEAAMLAGLVKSPS
RLAPNRNPEGAEKRAQLVLAAMAEADFITDKQARAAIANPVYTVAPTGAGTLNYVADW
IGEVLDDLVGQIDQSIVVETSIDPKLQTEAEAAIIDELAAKSVKFKVSQGALVAMTPD
GAVRAMIGGRNYADSQFNRAVTAKRQPGSAFKPFVYLTAIEAGLTPDTIRQDAPLDLK
GWRPENYTHEYFGAVTLTQGLAMSLNTVAVRLGLEVGPKNVVRTAHRLGIASKLDANP
SIALGTSEVSLAELVGAYAPFANGGLMASPHVVTRIRTASGNKLLYARPSDPPSRVVD
ARAVAMMNTMMQETLQSGTGRKADLPGWSAAGKTGTSQDFRDAWFIGYTSTLITGVWL
GNDDNSPTKKATGGGLPVDVWTRFMRAALQGAAPQPLPGGWVEAPATIAQSGPRGETQ
VMNVAPPSGRAPQPTRANVRPEADTGLDGWLMDRLFGR"
misc_feature 141769..142299
/locus_tag="RPD_0124"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature 141805..143352
/locus_tag="RPD_0124"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:211713"
misc_feature 142552..143349
/locus_tag="RPD_0124"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene complement(143897..144667)
/locus_tag="RPD_0125"
/db_xref="GeneID:4020581"
CDS complement(143897..144667)
/locus_tag="RPD_0125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567266.1"
/db_xref="GI:91974607"
/db_xref="InterPro:IPR002725"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:4020581"
/translation="MSGSAEMAFRALLYRRPTEPSTIAVRHGSQFFAVRIRRHRRATR
YTLRIHPSDREAILTMPPRGTLVDAKDFAQRHGAWIAARLGRLPKAAPFQPGTLVPLR
GHDHKIVHRTGRGTVWTETRDSGERIICVAGDAEHIDRRVHDFLKREARHDLQKACDR
YAPELGVKVTRLSIRDQSSRWGSCTSAGSLSFSWRLILAPPYVLDYLAAHEVAHLVEM
NHSARFWRVVGKVCPHMERAKTWLDTHGNDLHRYGISD"
misc_feature complement(143933..144517)
/locus_tag="RPD_0125"
/note="Protein of unknown function DUF45; Region: DUF45;
pfam01863"
/db_xref="CDD:145171"
gene complement(144990..146315)
/locus_tag="RPD_0126"
/db_xref="GeneID:4020582"
CDS complement(144990..146315)
/locus_tag="RPD_0126"
/codon_start=1
/transl_table=11
/product="polyhydroxyalkanoate depolymerase,
intracellular"
/protein_id="YP_567267.1"
/db_xref="GI:91974608"
/db_xref="InterPro:IPR009656"
/db_xref="InterPro:IPR010915"
/db_xref="GeneID:4020582"
/translation="MPVIGEFGRPPEMPAEVSPAMTTPMYWFYELAHASLNPARAMSD
AARLMFKNPLNPWSHTDLGKSIAAACEVFERTTRRYGKPEWGLDDTEVNGMRVPIEIH
NVWEKPFCRLLYFERKLEHPLRHPQPRVLIVAPMSGHYATLLRGTVEAFLPTHEVYIA
DWTDARMVPVAAGRFDLDDYVDYVIEMLQTLGGNVHVVAVCQPSVPVLAAVSVMEAND
DPFVPLSMTLMGGPIDTRRNPTSVNNLAAEKGIDWFRSHVITKVPFPHPGVMRDVYPG
FLQLNGFISMNLDRHMDAHKNLFNHLVQGDGDLADKHREFYDEYLAVMDLTAEFYLQT
VDLVFVKHALPKGEMTHRGKLVEPSKIKRVALMTVEGENDDISGLGQTEATHTLCTSI
PDERRVHYVQKGVGHYGVFNGSRFRSEIVPRISDFMLSSASGARATAAE"
misc_feature complement(145032..146240)
/locus_tag="RPD_0126"
/note="polyhydroxyalkanoate depolymerase, intracellular;
Region: PHB_depoly_PhaZ; TIGR01849"
/db_xref="CDD:130908"
misc_feature complement(145032..145628)
/locus_tag="RPD_0126"
/note="PHB de-polymerase C-terminus; Region: PHB_depo_C;
pfam06850"
/db_xref="CDD:148454"
gene 146905..147660
/locus_tag="RPD_0127"
/db_xref="GeneID:4020583"
CDS 146905..147660
/locus_tag="RPD_0127"
/codon_start=1
/transl_table=11
/product="type 12 methyltransferase"
/protein_id="YP_567268.1"
/db_xref="GI:91974609"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4020583"
/translation="MHNRYGKLASWVYNLDKPVGRSFGDVEFYRQRLKDVDGPILEPA
AGNGRILVPLLEAGLRIEGFDASDEMLGYCRDECGKRHLSAGLTRQRFDDFSYDTRFA
SIIMPAGSFQLITDAASAAAVLKRFHDHLAPQGRLIIDLDPISGFLGASRSIRSWATD
DGDMLTLTDHRVETDFIAQTTLSHLRYEHWQDGSLTRTELDLFKLRWWGVNEFSLALQ
AAGFSDVEVSGNYQHGRAPQPGDDIISFEARRA"
misc_feature 147013..147321
/locus_tag="RPD_0127"
/note="Methyltransferase domain; Region: Methyltransf_18;
pfam12847"
/db_xref="CDD:205104"
misc_feature order(147031..147051,147097..147102,147172..147180,
147226..147228)
/locus_tag="RPD_0127"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(147710..148540)
/locus_tag="RPD_0128"
/db_xref="GeneID:4020584"
CDS complement(147710..148540)
/locus_tag="RPD_0128"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567269.1"
/db_xref="GI:91974610"
/db_xref="InterPro:IPR000412"
/db_xref="GeneID:4020584"
/translation="MRSLINSLELGHGIAWHRIEAMVLRYWYLLLSSWPRLLELVYWP
ALQIITWGFLQSYIAQNAGFFARAGGTLIGAVILWDILFRGQLGFSISFLEEMWARNL
GNLMMSPLKPIEFLASLMIMSLIRLAIGIVPMTLLAMIFFDFNLLGFGLPLIAFFCNL
IFTSWALGIFVSGLVLRNGLGAESIVWTLMFGVMPLACVYYPVSVLPHWLQLVAWTLP
PTYVFEGMRALLMEHQFRVDLMLWSLGLNAVLFAAAFISFLVMLNSARRHGSLIQTGE
"
misc_feature complement(147758..>148327)
/locus_tag="RPD_0128"
/note="ABC-type multidrug transport system, permease
component [Defense mechanisms]; Region: COG0842"
/db_xref="CDD:31184"
misc_feature complement(147848..>148207)
/locus_tag="RPD_0128"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene complement(148537..149331)
/locus_tag="RPD_0129"
/db_xref="GeneID:4020585"
CDS complement(148537..149331)
/locus_tag="RPD_0129"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567270.1"
/db_xref="GI:91974611"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020585"
/translation="MTLEIASRPAPSATDAPAAAAIEVAHLVKVYKTTRAVDDISFRV
PRGSITGLLGGNGAGKTTTISMIMGLVLPTSGRVRVLGHEMPERRADVLGRINFESPY
VDMPSRLTVRQNLIVFGKLYAVKDLPGRIAELAADLDLGEFLDRASGKLSAGQKTRVA
LAKALINRPELLLLDEPTASLDPDTADWIRSHLETYRKQHGASILLASHNMLEVERLC
DRVVIMKRGRIEDDDSPAAIMARYNRATLEEVFLDVARGRAAGSGR"
misc_feature complement(148573..149268)
/locus_tag="RPD_0129"
/note="ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism]; Region: NatA; COG4555"
/db_xref="CDD:34199"
misc_feature complement(148645..149268)
/locus_tag="RPD_0129"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature complement(149149..149172)
/locus_tag="RPD_0129"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(order(148705..148707,148804..148809,
149029..149031,149146..149154,149158..149163))
/locus_tag="RPD_0129"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature complement(149029..149040)
/locus_tag="RPD_0129"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature complement(148852..148881)
/locus_tag="RPD_0129"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature complement(148804..148821)
/locus_tag="RPD_0129"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature complement(148786..148797)
/locus_tag="RPD_0129"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(148699..148719)
/locus_tag="RPD_0129"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
gene 149441..150763
/locus_tag="RPD_0130"
/db_xref="GeneID:4020586"
CDS 149441..150763
/locus_tag="RPD_0130"
/codon_start=1
/transl_table=11
/product="periplasmic sensor signal transduction histidine
kinase"
/protein_id="YP_567271.1"
/db_xref="GI:91974612"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020586"
/translation="MSDDQNSSDFRHPRRHVRLDTILRLRWLAALGQISAIFIVAQGL
EFDFAVLPCLAIVAASAVVNLGLQIAFNPMQRMEPIYAALLLALNIAELAGLLYFTGG
LQNPFAFLFLGPVLIAATALPTRFTISLGILAASCAALLGYAHQPLPWAGEEAVQLPE
IYLIGVWLSILLAIGVTSVYTFQVTEEARKLADALSATELVLEREQHLTQIDGMAAAA
AHELGTPLSTIFLISRELEKSAPPEMVGDLRTLREQAQRCREILAKISHLNAAGAPFD
QMPLSTLIEEAVAPHRDFGVAIKIRVAVSGVSEPVVMRNPAILYGIGNILENAVDFAR
ETVEVNAWWNADTVQIMISDDGPGIKPDLLKRIGEPYLSRRRHPDDAHTERSGLGLGV
FIARTLLERTGAKVSFRNKLFPDHGAVVQLTWPRNRFENSEIPAVAEA"
misc_feature <149951..150739
/locus_tag="RPD_0130"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 150080..150244
/locus_tag="RPD_0130"
/note="His Kinase A (phosphoacceptor) domain; Region:
HisKA; smart00388"
/db_xref="CDD:197695"
misc_feature order(150080..150082,150092..150094,150104..150106,
150113..150115,150125..150127,150134..150136,
150179..150181,150191..150193,150200..150202,
150212..150214,150221..150223)
/locus_tag="RPD_0130"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 150098..150100
/locus_tag="RPD_0130"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 150404..150712
/locus_tag="RPD_0130"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(150410..150412,150422..150424,150431..150433,
150494..150496,150500..150502,150506..150508,
150512..150517,150605..150616,150662..150664,
150668..150670,150689..150694,150698..150700)
/locus_tag="RPD_0130"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 150422..150424
/locus_tag="RPD_0130"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(150506..150508,150512..150514,150605..150607,
150611..150613)
/locus_tag="RPD_0130"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 150866..151420
/locus_tag="RPD_0131"
/db_xref="GeneID:4020587"
CDS 150866..151420
/locus_tag="RPD_0131"
/codon_start=1
/transl_table=11
/product="response regulator receiver"
/protein_id="YP_567272.1"
/db_xref="GI:91974613"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002197"
/db_xref="GeneID:4020587"
/translation="MNAIPELNDLTDRSLLIVEDDKPFLERLSRAMETRGFAVTSCDS
VSSGLAQIGKAAPAFAVVDLRLGDGNGLDVVSALKRERPDARAIVLTGYGNIATAVTA
VKMGAVDYLSKPADADDVVAALLASGTEKSELPNNPMSADRVRWEHIQRIYEMCNRNV
SETARRLNMHRRTLQRILAKRAPR"
misc_feature 150881..151417
/locus_tag="RPD_0131"
/note="Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription]; Region: COG4567"
/db_xref="CDD:34205"
misc_feature 150911..151207
/locus_tag="RPD_0131"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(150920..150925,151052..151054,151076..151078,
151136..151138,151193..151195,151202..151207)
/locus_tag="RPD_0131"
/note="active site"
/db_xref="CDD:29071"
misc_feature 151052..151054
/locus_tag="RPD_0131"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(151061..151066,151070..151078)
/locus_tag="RPD_0131"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 151202..151207
/locus_tag="RPD_0131"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 151316..>151396
/locus_tag="RPD_0131"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene complement(151611..152090)
/locus_tag="RPD_0132"
/db_xref="GeneID:4020588"
CDS complement(151611..152090)
/locus_tag="RPD_0132"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567273.1"
/db_xref="GI:91974614"
/db_xref="InterPro:IPR009394"
/db_xref="GeneID:4020588"
/translation="MESNAVHMVLPPDLRQSETALKVARGASRLLRSLGFACVSELPL
PSGRRADLVALNERGEIWIVEIKSSVEDLRADQKWPDYRAHCDRLFFAFTQDLPCEIF
PADTGLIVADGYGAHMHCEAPEHKLPAPTRKLMMLRFALAAAQRLNRLSDPQGFGDG"
misc_feature complement(151626..152060)
/locus_tag="RPD_0132"
/note="Protein of unknown function (DUF1052); Region:
DUF1052; pfam06319"
/db_xref="CDD:115006"
gene 152241..153359
/locus_tag="RPD_0133"
/db_xref="GeneID:4020589"
CDS 152241..153359
/locus_tag="RPD_0133"
/codon_start=1
/transl_table=11
/product="von Willebrand factor, type A"
/protein_id="YP_567274.1"
/db_xref="GI:91974615"
/db_xref="InterPro:IPR002035"
/db_xref="GeneID:4020589"
/translation="MKRITMLRALAFAALIAPLAIPSAARARPAVEVAFVLDTTGSMS
GLIEGAKRKIWSIATAIVDSNPGADIRMGLVAYRDIGDDYVTRNVELTPDIQDLYARL
LELQARGGGDWPESVNEALDVAVNKLRWSKDGDTRRIVFLVGDAPPHMDYAQDTKYPT
TLSVARQKDIIVNAVQAGAARDTERVWHEIADGGRGRYIPIPQDGGQIVVIETPYDQD
IIILQNRINGTVIPYGPAPLQKRTEEQTRQLSKVAAAAPAAASDMASYINKRARTSSE
AVTGGGDLVSDVMAGRQKLDQVKDEELPDSLRALPAEQRTAKIEAEMNQRKALNEKLA
TLVKQRDAYLFAQRDKQPEQASSFDREVEATLKAQLKR"
misc_feature 152331..152837
/locus_tag="RPD_0133"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:29222"
misc_feature order(152352..152354,152583..152585,152673..152675)
/locus_tag="RPD_0133"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 153579..154247
/locus_tag="RPD_0134"
/db_xref="GeneID:4020590"
CDS 153579..154247
/locus_tag="RPD_0134"
/codon_start=1
/transl_table=11
/product="beta-lactamase-like protein"
/protein_id="YP_567275.1"
/db_xref="GI:91974616"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4020590"
/translation="MSTQSDTKTKAGAAIIPVTPFQQNCTLLWCEATRKAVVVDPGGD
VPEILAAIEKTGVSVEKIWLTHGHIDHVGGAAELRDALGVQIEGPHRDDLFLLENVVN
SGRSFGIGGVRDVTPDRWLDHGDSVSVGELTFQILHCPGHSPGSVVFFNDAMRFALVG
DVLFAGSVGRTDLPGGNHATLISSITDRLLPLGDDVGFICGHGAGSSFGQERLTNPFL
NGAM"
misc_feature 153615..154229
/locus_tag="RPD_0134"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature 153648..154184
/locus_tag="RPD_0134"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 154717..155706
/locus_tag="RPD_0135"
/db_xref="GeneID:4020591"
CDS 154717..155706
/locus_tag="RPD_0135"
/codon_start=1
/transl_table=11
/product="helix-turn-helix, AraC type"
/protein_id="YP_567276.1"
/db_xref="GI:91974617"
/db_xref="InterPro:IPR000005"
/db_xref="GeneID:4020591"
/translation="MTVELLSEPLSEFRALDTSDPVELAQALWTVYGVRHFEAPPAGH
FRIRGNFIQLQDIALGFTSGHAPLTVDFPEADFARLQIGLAGQASTRSAGVTTAVDSR
QGCITSPGRTARTEFGETYEQLLLRVKNGALERKLSALLGTKPKRTIEFEPAATNDLP
QAANLRRMIAFVSSQINSPSAPLPALVLAELQDAITLLLLSTYRHNFSRFLEADSPTA
APKHVRKIEEYIEANWMKPITIETLVDLTGISARGVFKTFQRNRGYSPMAFAKQVRLQ
HARAMLTQGRTQTTVTAAAFACGFANLGHFAKDYRELFGERPSETLGRSSTSL"
misc_feature 155443..155688
/locus_tag="RPD_0135"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
gene complement(155814..156233)
/locus_tag="RPD_0136"
/db_xref="GeneID:4020592"
CDS complement(155814..156233)
/locus_tag="RPD_0136"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567277.1"
/db_xref="GI:91974618"
/db_xref="InterPro:IPR009642"
/db_xref="GeneID:4020592"
/translation="MMNRFAGAAVVVLSLATPSIVNAQGVPGGVERGAREGERAAGPV
GAVVGGTIGGVVGGVAGILGVDDRPRFRSYVVDQRRPSYSYREDVRVGAVLPADGVTY
YEVPDQFSAARDYRYTVVNGRTVLVEPRTRRIVEIIE"
misc_feature complement(155817..156014)
/locus_tag="RPD_0136"
/note="Protein of unknown function (DUF1236); Region:
DUF1236; pfam06823"
/db_xref="CDD:203525"
gene complement(156463..157641)
/locus_tag="RPD_0137"
/db_xref="GeneID:4020593"
CDS complement(156463..157641)
/locus_tag="RPD_0137"
/codon_start=1
/transl_table=11
/product="esterase, PHB depolymerase"
/protein_id="YP_567278.1"
/db_xref="GI:91974619"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR010126"
/db_xref="GeneID:4020593"
/translation="MSLKNTIDFLAHLRKFNGLSSLGAVSGGAGDASPLTETTDFGDN
PGQLRMLSFIPEGLSQRIPLVVVLHGCTQTATGYDVGAGWSTLAERYGFALLMPEQTR
ANNPNLCFNWFVPDDIRRGHGEAGSIRQMVEHLARTHQIDRARIFVTGLSAGGAMTAA
MLATYPDVFAGGAVIAGLPYAVAGTVRQALKEMRHASPHSAHQLGDLVRRASSHRGPW
PKLSVWHGSADRTVDSGNADALVKQWLDLHGLPEAPMAQRKIDGFPHRIWWNSSGETA
VESYTITDMAHGTPLGRANDEHFGVAGAYLLETGISSSFHIAEFFGLTAQVHQPKSVR
QTSARPDRAAVATESKASQSKPRAAAGARRTQEPPRDRRGFDVNAVITRALTAAGLMK
"
misc_feature complement(156856..157494)
/locus_tag="RPD_0137"
/note="esterase, PHB depolymerase family; Region:
esterase_phb; TIGR01840"
/db_xref="CDD:162554"
misc_feature complement(156868..157458)
/locus_tag="RPD_0137"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(157856..158101)
/locus_tag="RPD_0138"
/db_xref="GeneID:4020594"
CDS complement(157856..158101)
/locus_tag="RPD_0138"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567279.1"
/db_xref="GI:91974620"
/db_xref="GeneID:4020594"
/translation="MKKIVLAAICSAAIGGLSIGQAAAQTTGPAPQDSMKMNDGMSKG
GMSDPGMKKTTTGMSKSSKAKATKKSMKSDKMNNMEK"
gene complement(158217..159605)
/locus_tag="RPD_0139"
/db_xref="GeneID:4020595"
CDS complement(158217..159605)
/locus_tag="RPD_0139"
/codon_start=1
/transl_table=11
/product="chromate transporter"
/protein_id="YP_567280.1"
/db_xref="GI:91974621"
/db_xref="InterPro:IPR003370"
/db_xref="GeneID:4020595"
/translation="MSSSASQPRTTDSAAPGVSLAEATSAWAKIALLSFGGPAGQIAV
MHRIVVDEKRWVSEERFLHALNYCMLLPGPEAQQLATYLGWLMHGTRGGLIAGGLFIL
PGALAIMVLSVIYVSFGQLGIVAALFFGLKAAVLAIVLQAVSRVGARALKTSATRALA
ALALLAIFVFDVPFPLIVLGAGLIGWLGSRAGLAGFSPPTSSTAVVATNEDGARVDAV
TAAGGTPGEALRVALVWLVLWLTPVAALLIGLGPDNVFSQLAVFFSKMALVTFGGAYA
VLAYVAQLAVDHYGWLKPGEMLDGLGMAETTPGPLIMVLQFVGFVAAFRTPGALPPLV
AGALGGLLTTWVTFAPCFLWIFLGAPYVERLRGNAALSAALAAITAAVVGVMLNLALW
FAIHTIFREVRKLSVAGLTLELPVLSSINPSAALLSALAIVAVFGFRMGTATVLLICA
SAGFALHFLGAL"
misc_feature complement(159045..159551)
/locus_tag="RPD_0139"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
misc_feature complement(158241..158834)
/locus_tag="RPD_0139"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene complement(159602..160213)
/locus_tag="RPD_0140"
/db_xref="GeneID:4020596"
CDS complement(159602..160213)
/locus_tag="RPD_0140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567281.1"
/db_xref="GI:91974622"
/db_xref="GeneID:4020596"
/translation="MSRPQLLPESPSEQDTAKFLRRFSELVAVGQSASYLRHAAGLID
ELIDRVRQTEALLHQQTADNADNLALRRRAEAEAMAARQELAPHAEALADLQDKFVCA
QHSFAAERADLTGRIARAESRLAEADAELRRLRARLAAIGPTHAIVPMQTLRLLQTQL
AALAGEFQRGGDLVSVAMCEVSICVIDQTLAAEPGRRSTATSA"
gene complement(160419..160742)
/locus_tag="RPD_0141"
/db_xref="GeneID:4020597"
CDS complement(160419..160742)
/locus_tag="RPD_0141"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567282.1"
/db_xref="GI:91974623"
/db_xref="GeneID:4020597"
/translation="MASRSAPDRAGLPGLISRSRLIAVACLVIAGAGVTTSPVSAQSC
QALWVERNSYYKEAGYCFKTSRAIGYFGNRGCSYDYEGDVPLSVNIRDRIAEIKAMER
RFGCN"
gene 160993..161466
/locus_tag="RPD_0142"
/db_xref="GeneID:4020598"
CDS 160993..161466
/locus_tag="RPD_0142"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567283.1"
/db_xref="GI:91974624"
/db_xref="GeneID:4020598"
/translation="MSDTMYDVFKFLHVVGVVVLVGNVTITAFWKAFSDLTRDPKIVA
HAQRGVTVSDLIFTLLGIVLVMVGGYGAAIVKDVPLFSSFWLVAGQILFAISGMMWLG
ILVPLQIRQARLARSFADGSDIPERYWRDTRTWLIWGIIATVPLVAAIFVMVVKF"
misc_feature 161065..161460
/locus_tag="RPD_0142"
/note="Predicted integral membrane protein (DUF2269);
Region: DUF2269; pfam10027"
/db_xref="CDD:204381"
gene 161499..161972
/locus_tag="RPD_0143"
/db_xref="GeneID:4020599"
CDS 161499..161972
/locus_tag="RPD_0143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567284.1"
/db_xref="GI:91974625"
/db_xref="GeneID:4020599"
/translation="MTVEQIAPVVDREALLPGAQFIDAYSVTIGDNALDAREAATRMV
EHGPRWIGTLMRLRNIVVTPFGLKTPAPGGSARGDRIGSFPVLSETPTRIVAGFDDSH
LDFRIVVDVVDGAAGRRVIASTLVLTHNRLGRTYLAAIMPFHRLVVRAMLGRVAQ"
misc_feature 161538..161954
/locus_tag="RPD_0143"
/note="Protein of unknown function (DUF2867); Region:
DUF2867; pfam11066"
/db_xref="CDD:151511"
gene 161969..162517
/locus_tag="RPD_0144"
/db_xref="GeneID:4020600"
CDS 161969..162517
/locus_tag="RPD_0144"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567285.1"
/db_xref="GI:91974626"
/db_xref="GeneID:4020600"
/translation="MKRRRNFGGRRRLPKVDGETNHNGGLSAPDEKTAALARAFDSAW
ERFIATEGAEADTDANRKRLASKIVALSRAGEADEDRLAQSGLIHLSVLAEAARLGSQ
PPAPTNGIGTSQQATHAQAFSPQTVAAMSAALEQCVETLPLQTPSSALQFLSARILEQ
ASRGEHDPERLSRHALEALRNR"
gene complement(162595..163710)
/locus_tag="RPD_0145"
/db_xref="GeneID:4020601"
CDS complement(162595..163710)
/locus_tag="RPD_0145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567286.1"
/db_xref="GI:91974627"
/db_xref="GeneID:4020601"
/translation="MKRFWSRYPAHWRPRRPQWGLALRITLGALLALAAAQALHLRLP
LWAVLTAIIVTQLSVGRSVKIAFDYLVGTIGGAIYGGAITILVPHSSELALLGVLALA
VAPLALLSAIKPNLNVATVTAIIVLLVPTMTQVSPLDSAIDRVLEVTVGALVGLLVSF
LVLPSRAQAQALGAAAQALDLMAVALGELLAGLIRGLDNDALHRLQDGIGAALVTLNE
IGDEAEHERATGLSRGPQMAPLIRTLLRLRHDLVMVGRAVAAPLPPPLQQRLGPCLDS
FRAAATLHLAASASALRDRRAPPPLRAVSSALDAYAAEVQTVRQDGLTRDLSGEQAER
FFALGFAMEQLTQNFRDLEMRVAEWAARPVVETPAAV"
misc_feature complement(<162952..163350)
/locus_tag="RPD_0145"
/note="Fusaric acid resistance protein family; Region:
FUSC; pfam04632"
/db_xref="CDD:203061"
gene 163879..165252
/locus_tag="RPD_0146"
/db_xref="GeneID:4020602"
CDS 163879..165252
/locus_tag="RPD_0146"
/codon_start=1
/transl_table=11
/product="MmgE/PrpD"
/protein_id="YP_567287.1"
/db_xref="GI:91974628"
/db_xref="InterPro:IPR005656"
/db_xref="GeneID:4020602"
/translation="MANETATLAGYVAALRFEDIPQDVLARAKVLTLDFLGSAIRARR
EAESTPSLLAMLQALSLDGDGAATVFGDAKRWTPAMAALLNGALGHSLDFDDTHADSS
LHPSAPVVPAAFAVGELVGASGREVLTAIVAGYEVCCRLGNALDPTSHYARGFHPTAT
AGAYGAAAAAAKLFGLTQDQIVAAFGVSGSQAAGSLQFLVNGAWNKRYQVGAAAMNGV
IAATLAKNDFIGATESVEGIHGLLVGYTDTPHHDKAVADLGRVYETMKIGVKPYPSCR
YTHAAIDALIAMRREHNLTPDQVKRVEIGLHRNGITLTGDAATKRHPSSIVGGQFSMF
FTGALALEQGSFGWDDYTRLGDPAIDALADRFDVVQDARLEGKTHPFGARVSITTDDG
VHERIYADPSGEPNAFPTDQAMAQKFLQLARPVLDGRAQQFADAILTLERFDRVATAT
ALGQPAS"
misc_feature 163900..165174
/locus_tag="RPD_0146"
/note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912"
/db_xref="CDD:199356"
gene 165321..165929
/locus_tag="RPD_0147"
/db_xref="GeneID:4020603"
CDS 165321..165929
/locus_tag="RPD_0147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567288.1"
/db_xref="GI:91974629"
/db_xref="GeneID:4020603"
/translation="MQRFVCEQNILHFQKLLDGPTDATLRRTLLTLLSSAKRELALLN
SHTSGADLSPALSRRKHTGDLESVLRQLRPGFETSAHPYMLIHPGPGLKIIDINAAFS
RATFSDRRDIVGRQLFEVFPDNPAIGTADGVSNLYASLRTVVETGQPHAMIVQRYDVR
DRTGGFIERYWQPINTPVHDSGERLICLLHHVEDVTAEVLAN"
misc_feature 165597..165911
/locus_tag="RPD_0147"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
gene 166201..167619
/locus_tag="RPD_0148"
/db_xref="GeneID:4020604"
CDS 166201..167619
/locus_tag="RPD_0148"
/EC_number="4.1.1.9"
/codon_start=1
/transl_table=11
/product="malonyl-CoA decarboxylase"
/protein_id="YP_567289.1"
/db_xref="GI:91974630"
/db_xref="InterPro:IPR007956"
/db_xref="GeneID:4020604"
/translation="MPSASVDRASEILGGLLTSLTERGRNLFRSSGDQPKTKEELIAL
GEALLSRRGEATGVAMASSLLSGYDGATDEDQLGFLDALAEHFGPDLAQLTAAVEAFH
VSGASADAAGQLLKAAEPRRQELIRRLNLAPGGTASLVQMRETVLSHLRDHPQLKHVD
DDFVHLFTSWFNRGFLVLQRIDWNTPANILEKIIRYEQVHAIHNWDDLRARLAPADRR
CYGFFHPQLVDEPLIFVEVALTLDRPAAIAPLLDLGREPIAARSATTAVFYSISNTQK
GLAGISFGNFLIKQVVEEIKRELPNVQSFVTLSPVPGFAKWLKRERAADESALLDDTA
RAALDVLDTPDWFDQPELAEQIRPIMLPLAAAYFLQAKNPRGQPQDPVARFHLGNGAR
LESLNFLGDRSPNGMRQSHGLMVNYLYALGEIEDNHEAFVERGQVAAASAVRRQLPSK
PLSSEPRKSNGAARRDGAQSPA"
misc_feature 166447..167457
/locus_tag="RPD_0148"
/note="Malonyl-CoA decarboxylase (MCD); Region: MCD;
pfam05292"
/db_xref="CDD:114040"
gene 167670..168587
/locus_tag="RPD_0149"
/db_xref="GeneID:4020605"
CDS 167670..168587
/locus_tag="RPD_0149"
/codon_start=1
/transl_table=11
/product="Pirin-like protein"
/protein_id="YP_567290.1"
/db_xref="GI:91974631"
/db_xref="InterPro:IPR003829"
/db_xref="InterPro:IPR008778"
/db_xref="GeneID:4020605"
/translation="MSWMPTDDPLLGDPKTCDALELIIVPRTRDLGDGFAVRRALPHG
KRQMVGPFIFFDHFGPVQFIPGKGMDVRPHPHIGLSTVTYLFDGTIMHRDSEGNIQEI
APGAMNLMTAGRGIAHSERTPEMQRRDGQSMLGLQSWIALPAGSEEIAPSFQHFAAAT
LPTVTDTGFTARVIAGSAFGEASPVTMVSPWFYVEVNARAGATVPLDPDHEERAIYLV
DGEIEIAGDRHSGPSLLIFRPGDRITVRVMTDTRMMFLGGDALEGPRHIWWNFVSSSK
ERIEQAKQDWKTGRFAAVPDESEFIPLPE"
misc_feature 167706..168545
/locus_tag="RPD_0149"
/note="Pirin-related protein [General function prediction
only]; Region: COG1741"
/db_xref="CDD:31927"
misc_feature 167769..168089
/locus_tag="RPD_0149"
/note="Pirin; Region: Pirin; pfam02678"
/db_xref="CDD:202346"
misc_feature 168246..168545
/locus_tag="RPD_0149"
/note="Pirin C-terminal cupin domain; Region: Pirin_C;
pfam05726"
/db_xref="CDD:203319"
gene 168656..169573
/locus_tag="RPD_0150"
/db_xref="GeneID:4020606"
CDS 168656..169573
/locus_tag="RPD_0150"
/EC_number="6.3.2.6"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_567291.1"
/db_xref="GI:91974632"
/db_xref="InterPro:IPR001636"
/db_xref="GeneID:4020606"
/translation="MTTMLTSDLPLNKIGRGKVRDIYAVDDERLLLVTTDRISAFDVV
MAETIPMKGAVLTQISAWWFDQLGGVVPHHMISADAAEIIDAVPALKDHRAALAGRAM
LCRRTTVFPIECVIRGYITGSAWKEYAASGTLAGETLPAGLQESERLAPPIFSPATKA
ETGHDENITIARMREIVGDETAYTLESMTRAVYTQGEAIAREQGIIIADTKFEFGRDA
NGRIILIDEVMTPDSSRFWAADSYAPGRSQPSFDKQPLRDYLDAERRAGRWNGEAPPP
KLPAEVVAATSARYLDAYRRLTGTDLVVK"
misc_feature 168692..169552
/locus_tag="RPD_0150"
/note="non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_Sc; cd01414"
/db_xref="CDD:133469"
misc_feature order(168695..168700,168704..168709,168713..168715,
168719..168724,168743..168745,168749..168751,
168875..168877,168968..168970,168974..168976,
168980..168982,169130..169132,169292..169294,
169328..169333)
/locus_tag="RPD_0150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133469"
misc_feature order(168698..168700,168704..168715,168719..168721,
168743..168745,168779..168781,168878..168880,
168965..168976,168980..168982,168992..168994,
168998..169000,169004..169006,169016..169024,
169124..169126,169130..169132,169148..169150,
169280..169288,169292..169294,169331..169333,
169349..169360)
/locus_tag="RPD_0150"
/note="active site"
/db_xref="CDD:133469"
misc_feature order(168779..168781,168992..168994,168998..169000,
169004..169006,169016..169024,169124..169126,
169148..169150,169280..169288,169349..169360)
/locus_tag="RPD_0150"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133469"
gene 169820..170602
/locus_tag="RPD_0151"
/db_xref="GeneID:4020607"
CDS 169820..170602
/locus_tag="RPD_0151"
/EC_number="4.2.1.17"
/note="Catalyzes the reversible hydration of unsaturated
fatty acyl-CoA to beta-hydroxyacyl-CoA"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase"
/protein_id="YP_567292.1"
/db_xref="GI:91974633"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020607"
/translation="MPQNTVLIERDGPVTIISINRPERRNAVDGATAQKLFDAFLAFD
ADETASVAVFTGTGGSFCAGADLKAVAAGDIEKKREIAGHNTIAPMGPSRLRLSKPVI
AAIEGYAVAGGLELALWADMRVAAEDATFGVFCRRFGVPLIDLGTIRLPRLIGHSQAM
DMILTGRPVSGIEAHRMGLANRLVHRGEAALHAITLAKEIAKFPQACMRADRLSALQQ
WDMPEEDAIMNEMRGGLQVIASGETLSGAERFTAGEGRHGKF"
misc_feature 169832..170572
/locus_tag="RPD_0151"
/note="enoyl-CoA hydratase; Provisional; Region: PRK08252"
/db_xref="CDD:181325"
misc_feature 169835..170419
/locus_tag="RPD_0151"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature order(169892..169894,169898..169900,169994..169996,
170006..170020,170141..170143,170147..170155,
170219..170224,170231..170233)
/locus_tag="RPD_0151"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature order(170012..170014,170153..170155)
/locus_tag="RPD_0151"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature order(170093..170095,170117..170119,170180..170191,
170225..170236,170252..170254,170258..170266,
170270..170275,170288..170293,170297..170302,
170306..170311,170318..170320,170351..170353,
170360..170362,170405..170407,170414..170419)
/locus_tag="RPD_0151"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(170705..171424)
/gene="radC"
/locus_tag="RPD_0152"
/db_xref="GeneID:4020608"
CDS complement(170705..171424)
/gene="radC"
/locus_tag="RPD_0152"
/note="Involved in DNA double-strand break repair and
recombination. Promotes the annealing of complementary
single-stranded DNA and by simulation of RAD51
recombinase"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadC"
/protein_id="YP_567293.1"
/db_xref="GI:91974634"
/db_xref="InterPro:IPR001405"
/db_xref="GeneID:4020608"
/translation="MPANSDEQLSQSGFAEAPHYHGHRERLRERFREAGADALSDYEL
LEMVLFRALPRRDVKPLAKALIARFGSFAETMHAPEPRLREVSGLGEAAITEIKLVAA
AAARVTKGQVKSRTVLSSWSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVG
TVDHTPVYPREIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTRTIVAIAEPLGVS
VHDHIIVGKNGHASLKGLKLI"
misc_feature complement(170708..171358)
/gene="radC"
/locus_tag="RPD_0152"
/note="hypothetical protein; Reviewed; Region: PRK00024"
/db_xref="CDD:178801"
misc_feature complement(170723..171061)
/gene="radC"
/locus_tag="RPD_0152"
/note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466;
cd08071"
/db_xref="CDD:163702"
misc_feature complement(order(170822..170824,170831..170833,
170855..170857,170861..170863,171011..171013))
/gene="radC"
/locus_tag="RPD_0152"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163702"
misc_feature complement(order(170822..170824,170855..170857,
170861..170863))
/gene="radC"
/locus_tag="RPD_0152"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163702"
gene complement(171562..173370)
/locus_tag="RPD_0153"
/db_xref="GeneID:4020609"
CDS complement(171562..173370)
/locus_tag="RPD_0153"
/codon_start=1
/transl_table=11
/product="chemotaxis sensory transducer"
/protein_id="YP_567294.1"
/db_xref="GI:91974635"
/db_xref="InterPro:IPR000727"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:4020609"
/translation="MARVSIRALSVAVFLGLALIVFLNLSSFFLYQGAQGEISEAQTS
RYQSYLLADELRQSSDDLTRLVRTYVVTGDAKFEQQYWDVLAIRNGEKPRPDQYQRIY
WDFMAADGRKPRPDGVNASLQQLMERGGFSAEEFGKLKQAQNNSNELIKLETIAMNAV
KGRFEDRDGKFTKTGAPDTALARELVHSADYHKYKAQIMAPIDEFFVLLDRRTGANVA
IAEAKAALYRTVSIVFLGLLLVSALVIGWVMLRGIARPLRSLSVSMNKLAEGDFNVAL
PGLDARNELGEVARAVERFKVKAEEKGQAEAEALLKQDQIAASQRRKDTHKLADDFEG
AVGRIIDTVSSASSELESSAGKLTSTATRAQQLATLVAGASEEASTNVQSVASATEEL
SASVNEISRQVQDSARMASEAVDQARRTNDRVGELSKAAARIGDVVELINTIAGQTNL
LALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGDIGQQISGIQAATQESVGAI
KEISGTIERLSEISATIASAVEEQGAATLEISRNVQQAAQGTQRVSSNIADVQNGASE
TGSASSHVLSAAQSLSNDSNRLKQEVGRFLDSVRAA"
misc_feature complement(172486..172614)
/locus_tag="RPD_0153"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(172486..172491,172495..172500,
172507..172512,172516..172521,172570..172572,
172576..172581,172588..172593,172597..172602,
172609..172614))
/locus_tag="RPD_0153"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(171586..172299)
/locus_tag="RPD_0153"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(171688..172260)
/locus_tag="RPD_0153"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(171691..171696,171703..171705,
171712..171717,171724..171726,171733..171738,
171742..171747,171754..171759,171763..171768,
171775..171777,171784..171789,171796..171798,
171805..171810,171817..171822,171826..171831,
171838..171840,171847..171852,171889..171894,
171901..171906,171910..171915,171922..171927,
171934..171936,171943..171948,171955..171957,
171964..171966,171976..171978,171997..171999,
172006..172008,172018..172020,172027..172032,
172039..172041,172048..172050,172057..172062,
172069..172074,172081..172083,172090..172095,
172099..172101,172111..172116,172120..172125,
172132..172134,172141..172146,172153..172158,
172165..172167,172174..172179,172186..172188,
172195..172200,172204..172209,172216..172218,
172225..172230,172237..172242))
/locus_tag="RPD_0153"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(171931..172032)
/locus_tag="RPD_0153"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 173763..174749
/locus_tag="RPD_0154"
/db_xref="GeneID:4020610"
CDS 173763..174749
/locus_tag="RPD_0154"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567295.1"
/db_xref="GI:91974636"
/db_xref="InterPro:IPR006164"
/db_xref="GeneID:4020610"
/translation="MAPRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRKTGNR
IKYTKVDADTGEEVSSDDIMKGYKVDTDSYIEITKDELDAIALESTRTIEIDQFVPKS
EIDDLYLVRPYYIVPDGKVGHDAYAVIRETIRTMDRVALARVVLTNREHVIALEARDN
GLMGMLLRYPYEVRDASEYFDDIQDVKITKDMLDLARHIVEQRSGHFEPDKFEDHYEA
ALTELINQKRNGQPIAPKARPRGDNVVDLMDALRKSLGGAKPAPAAGKAASAEKPAAK
PARTKKRKTAPGQKEMLLPISGAKSAAAKQDAGKAKKPARSSTASSKARKTG"
misc_feature 173769..174527
/locus_tag="RPD_0154"
/note="Ku protein, prokaryotic; Region: Ku_bact;
TIGR02772"
/db_xref="CDD:163009"
misc_feature 173772..174527
/locus_tag="RPD_0154"
/note="Ku-core domain, Ku-like subfamily; composed of
prokaryotic homologs of the eukaryotic DNA binding protein
Ku. The alignment includes the core domain shared by the
prokaryotic YkoV-like proteins and the eukaryotic Ku70 and
Ku80. The prokaryotic Ku...; Region: KU_like; cd00789"
/db_xref="CDD:63881"
misc_feature order(173775..173777,173832..173834,173862..173864,
173907..173909,174201..174203)
/locus_tag="RPD_0154"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:63881"
misc_feature order(173811..173813,173832..173846,173862..173873,
173886..173888,173895..173906,173910..173918,
173934..173936,173946..173954,173958..173960,
173964..173969,173979..173984,173991..173993,
174048..174050,174054..174059,174087..174089,
174132..174134,174189..174191,174270..174278,
174282..174284,174369..174371,174381..174383,
174396..174404,174441..174443,174516..174518,
174525..174527)
/locus_tag="RPD_0154"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:63881"
gene complement(175023..175847)
/locus_tag="RPD_0155"
/db_xref="GeneID:4020611"
CDS complement(175023..175847)
/locus_tag="RPD_0155"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase, type I"
/protein_id="YP_567296.1"
/db_xref="GI:91974637"
/db_xref="InterPro:IPR000994"
/db_xref="InterPro:IPR001714"
/db_xref="InterPro:IPR002467"
/db_xref="GeneID:4020611"
/translation="MSYVDASETSLRKTGQIKLHGAAGFAGMRKAGQIVAQCLDELVD
IVKPGVPTSLIDDFVRDFAFSHGAFPATLMYRGYRYSTCTSINHVVCHGLPGDRPLKE
GDIVNVDVTMIVDGWYGDSSRMYPIGPIARKAERLIEVTYESLMRGIAAVKPGATTGD
IGHAIQSFVEPQQMSVVRDFCGHGLGRLFHDEPNIIHVGSPGQGAVLKPGMFFTIEPM
INLGKPYVKILSDGWTAVTRDRSLSAQFEHSIGVTADGCEIFTLSPKGLDKPPLQG"
misc_feature complement(175062..175775)
/locus_tag="RPD_0155"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:29971"
misc_feature complement(order(175107..175109,175200..175202,
175299..175301,175488..175490,175521..175523,
175572..175574))
/locus_tag="RPD_0155"
/note="active site"
/db_xref="CDD:29971"
gene complement(175945..177258)
/locus_tag="RPD_0156"
/db_xref="GeneID:4020612"
CDS complement(175945..177258)
/locus_tag="RPD_0156"
/codon_start=1
/transl_table=11
/product="mechanosensitive ion channel MscS"
/protein_id="YP_567297.1"
/db_xref="GI:91974638"
/db_xref="InterPro:IPR006685"
/db_xref="GeneID:4020612"
/translation="MIDLTQAYEALLAAASSVGAEITSPWFYAQLGMILAALGIGLGG
GALIKARVDMTTLTMGWPAPLRMFLRVVIDSAWTAIFALVVIAVRLAMLQMTWPSRSY
LIGVSAKLALAWLMIRLVTSILRNPFLIRVVSLSAWCVAALSIIGQLFPVLDALDSVA
IEIGELRLSPFLILKLGVLLAIALWLASIASNFFEGRINQSRDLTPSIQVLLIKLMRI
GLMAAAIALTMSAVGINLQALAVFSGAVGVGIGFGLQKIFANFISGVILLVDKSVKPG
DLVTIGDNSGRISAMNTRYISVAAGDGREFLIPNEDLITQKVVNWTYTDKNTLVKVAF
ATNYDADPRTVCRLAIDVAAAVPRASKAKSPGCILTEFTETGMKFALTFWIGEPDGMD
GVKSEAMLGLWDAFRREGIGVPYPVREIRVRNGALPAETIVEVPQ"
misc_feature complement(176020..176616)
/locus_tag="RPD_0156"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 177483..179273
/locus_tag="RPD_0157"
/gene_synonym="cvrA; nhaP2; ycgO"
/db_xref="GeneID:4020613"
CDS 177483..179273
/locus_tag="RPD_0157"
/gene_synonym="cvrA; nhaP2; ycgO"
/note="the Vibrio parahaemolyticus gene VP2867 was found
to be a potassium/proton antiporter; can rapidly extrude
potassium against a potassium gradient at alkaline pH when
cloned and expressed in Escherichia coli"
/codon_start=1
/transl_table=11
/product="potassium/proton antiporter"
/protein_id="YP_567298.1"
/db_xref="GI:91974639"
/db_xref="InterPro:IPR005170"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:4020613"
/translation="MDSLDTVSITILLGAILVMAGILSSLLALRFGAPLLLVFLVLGM
LAGEAGPGGLRFDDLSTTYLVGSVALALILFDGGLRTRFQTIKAVLAPSMGLATAGVL
LTALITAPVAHYALDLSWTEALLAGAVVASTDAAAVFLLVHSQGLRLRPRVGATLEVE
SGTNDPFAVFLTLMLVELITRGGSTIWYVIFEFVREAALGTVIGVVGGRAVVMALNRV
ALPQGLHAPFVTTAALVVFGAAQMLHASGFLAVYLAGMIIGNQPTRAHNSVVAFLDAA
TWLAQIVMFVLLGLLVSPQRLMMSIGPAVLVALALMLVARPVAVFLCLAPFRFNWRER
LFIAWVGLRGAVAIFLASIPMMVGLPKAHLYFDVAFVVVIISLLLQGWTLGPAARKLH
IALQRTDRGPRRIELDLPGQLEQQLVGYAVRPKSLFLRRGLVPSWSKPTLVIRDERIL
TPEEADPVAAGDYVYLLAPPEKAEALDRFFVDMPPSTAPDPHLLGDFVVPGETSLGDL
AAAYGVSVQAGEEALTLADYFDIHLDRAPTVNATVALDSIVLVARSLGGGRVNVVGLR
LPEDDDAPPPTRVQKARRKLSKVWSTLSGV"
misc_feature 177492..179138
/locus_tag="RPD_0157"
/gene_synonym="cvrA; nhaP2; ycgO"
/note="potassium/proton antiporter; Reviewed; Region:
PRK05326"
/db_xref="CDD:180017"
misc_feature 178965..>179135
/locus_tag="RPD_0157"
/gene_synonym="cvrA; nhaP2; ycgO"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(179274..180227)
/gene="mepA"
/locus_tag="RPD_0158"
/db_xref="GeneID:4020614"
CDS complement(179274..180227)
/gene="mepA"
/locus_tag="RPD_0158"
/note="D-alanyl-D-alanine endopeptidase; functions in
hydrolyzing cell wall peptidoglycan; similar to LAS
metallopeptidases; forms a dimer in periplasm"
/codon_start=1
/transl_table=11
/product="penicillin-insensitive murein endopeptidase"
/protein_id="YP_567299.1"
/db_xref="GI:91974640"
/db_xref="InterPro:IPR005073"
/db_xref="GeneID:4020614"
/translation="MRRRSIPARWLLAAALLSASAAAAWAQDKGTVNPKPLPPLANPN
DPELAARELFARRYLPAALPARPIGFYARGCLAGGEALPLTGATWQVMRLSRNRYWAY
PPLVALVERLSKRANSEAGWPGILVGDMSQPRGGPMLTGHASHQVGLDADIWLTPMPN
RQLSRNEREEMSAVMMVRRDRLDIDPAAWTPTHHRVIRAAAQEPAVERIFVNAAIKKA
LCREAKGDRGWLNKVRPMYGHDYHFHIRIKCPPGAIGCEAQPEPPQGEGCGADLDYWF
SDAVLHPKPPKEPPKPKKPMTLADLPAECRAVLNAPDQKPD"
misc_feature complement(179292..180026)
/gene="mepA"
/locus_tag="RPD_0158"
/note="penicillin-insensitive murein endopeptidase;
Reviewed; Region: mepA; PRK09429"
/db_xref="CDD:181849"
gene 180631..182859
/locus_tag="RPD_0159"
/db_xref="GeneID:4020615"
CDS 180631..182859
/locus_tag="RPD_0159"
/codon_start=1
/transl_table=11
/product="GGDEF domain-containing protein"
/protein_id="YP_567300.1"
/db_xref="GI:91974641"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="GeneID:4020615"
/translation="MPQIRLKANKTSKRCAGAALRKRRRAVRKGPGPSTVPKRPVRAG
LAAERERAVAQALAEARKSHERLREAIDLVPQGIVFLDSEGRYILWNKRYAEIYKASA
DMFKPGARFQDTLRVGIARGDYPEAIGREDDWIAERMQRMFHPSHSHEQILADGRCIQ
IEECTTSDGGVIGLRVDITELKQREASFRLMFDSNPVPMIVCALRDERILAVNDAAVA
HYGYSSVEFAQLTLRRLQAFESDLPWAGDHTDDERAARTWKHVKADGSLIDLAIYSRQ
LTYNGEPAVLLALMDITERKRAEMRLAFMTHHDGLTGLPNRNLLRKRLDELLVHTRRA
SDKIAVLFIGIDHFKAVNDTLGHAIGDKLLRGVARRLRSTLREEDLLARLNSDEFAVV
QTGIRRPQEITLLAKRLLNAIAEPYLLDGHSVVAGASIGIAVAPVDGDDSEKLLMNAD
MALSRAKNDSRGSFSFFEPGMDARAQARRKIETELRTALRNEVLRPYYQPLVELSSGR
ISGCEALVRWPHPDRGMISPAEFIPVAEDTGLINAIGAQVLRQACLDASRWPGDIRVA
VNLSPLQFRVGNLMATVMDALKYAGLPPHRLEIEITETLLLEKSSQVIATLHALRALG
VRISMDDFGTGYSSLSYLRSFPFDKIKIDQSFVRDLCNNREAQAIVRAIISLGMGLGV
TITAEGVETEAELSWLRAEGCHEAQGFLFSAARPNEEIKGLLDLQQSAAPDQQFPAAR
VA"
misc_feature 180841..181188
/locus_tag="RPD_0159"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 181180..181536
/locus_tag="RPD_0159"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature 181192..>181308
/locus_tag="RPD_0159"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cl02459"
/db_xref="CDD:207601"
misc_feature 181549..182022
/locus_tag="RPD_0159"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(181660..181662,181789..181791)
/locus_tag="RPD_0159"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(181675..181677,181684..181689,181699..181701,
181711..181713,181777..181779,181783..181794)
/locus_tag="RPD_0159"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(181765..181767,181852..181854)
/locus_tag="RPD_0159"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 182077..182787
/locus_tag="RPD_0159"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(183064..184008)
/locus_tag="RPD_0160"
/db_xref="GeneID:4020616"
CDS complement(183064..184008)
/locus_tag="RPD_0160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567301.1"
/db_xref="GI:91974642"
/db_xref="GeneID:4020616"
/translation="MGVVLDAIGKVIANYLQKEEPGYEPFTPSDPDHLRSIMQPGDVL
LVEGNARISGIIKYLTQSTWSHAALYVGPIDGATEPDGEPHVLIEANIGEGVSSSPLS
RHLSYHTRICRPVGLSHEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPLPVPQRWRR
RMIALGSGDPTKIICSALIAQAFDSVRYPILPKITRAGSRKARREILHIRDSSLYMPR
DFDISPYFEVVKPTIINGFDYTALHWADKQKPLAEVAGPFNTFQDDLENASSFAPETI
DAEAPAMGGANQAPAVILSRTHWQHPEPRTLAPLEASS"
misc_feature complement(<183592..183894)
/locus_tag="RPD_0160"
/note="Orthopoxvirus protein of unknown function (DUF830);
Region: DUF830; cl13998"
/db_xref="CDD:209853"
gene 184346..185770
/locus_tag="RPD_0161"
/db_xref="GeneID:4020617"
CDS 184346..185770
/locus_tag="RPD_0161"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation pathway signal"
/protein_id="YP_567302.1"
/db_xref="GI:91974643"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR002937"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4020617"
/translation="MTISRRSLLGAAAGLVVLPAFASRAFAALPREVDVVVVGAGAAG
IAAARRIVAAGRKVIVVEASAQAGGRCLTDADGFDAPFDRGARWLHNPDSNPIIRLAR
SVGVDIVPAPPGQKIRIGRRNARARETEDYLATLVRASRAIDDAARGKVDVASAAALP
NDLGDWGATIAFVLGPHVSGKDLKELSALDESRAPDRNALSGARQGLGTLLSRLAAPL
PLALSTPVTRIVWNGRDTGVETASGRITARAVIVTASTNVLASGAIKFTPELPKRQLD
AAAKLGLGSYDRIALQFKGNPLGLSRDEVIVEQSNSARTAALYANINGSSLCTVDIGG
AFGRDLSAQGEAAMQAFALEWLGKLFGSDITAAVERKAATRWNASPFVLGAMSAAAPG
GQPSRKVLAEPLGNLFIAGEATSETLWGTVQGAWESGDRAAEAALKRIGALKSDEPAK
PERKPKKRRTYEATGAAEQWPGLR"
misc_feature 184529..185662
/locus_tag="RPD_0161"
/note="Monoamine oxidase [Amino acid transport and
metabolism]; Region: COG1231"
/db_xref="CDD:31424"
gene complement(185997..188471)
/gene="pheT"
/locus_tag="RPD_0162"
/db_xref="GeneID:4020618"
CDS complement(185997..188471)
/gene="pheT"
/locus_tag="RPD_0162"
/EC_number="6.1.1.20"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a tetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 2 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit beta"
/protein_id="YP_567303.1"
/db_xref="GI:91974644"
/db_xref="InterPro:IPR000834"
/db_xref="InterPro:IPR002547"
/db_xref="InterPro:IPR004532"
/db_xref="InterPro:IPR005121"
/db_xref="InterPro:IPR005146"
/db_xref="InterPro:IPR005147"
/db_xref="GeneID:4020618"
/translation="MSQLQHSARRQHSARRKSQPMKLTLSWLKDHLDTDETLTALADK
LTMIGLEVEDITDKAKALAPFTIARVLSAEKHPNADKLQVCSVDTGDGGAPVQVVCGA
PNARAGLITVFSPPGTFIPGKNITLGVGNIRGVESRGMLCSAAELQISEDHDGIMELP
ADAPIGKAYAEWAGLGDPVLDINLTPNRQDCAGVHGIARDLAAADMGKLKESGIKPIK
GEFPCPVQVSVEDDKLCPGFALRLVRGVKNGPSPEWLQKRLTAIGLRPINALVDITNF
LTFDRSRPLHVFDAAKVKGNLVVRRARDGETLLALDGRNYNLDPGVCVIADDHGVESL
AGIMGGEASGCSAETTDVLIESALWNEINIAQSGRKLGINTDARYRFERGVDPAFMVP
GLDLATRLVIEFCGGTPSEMVVVGRTFGDDRIIDFPLSEVKRLAGIDVPLAEARRILT
HLGFMVAGQGAVVKVAAPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERGDAPRKPV
LTPIQTRTRRAKRALAARGLTEAVTWSFIAKPSAEAFGGGQPELALANPIASDLSDMR
PSLLPGLVAAAQANADRGTPDLALFEVGQIFKGDRPQDQFVAASGVRRGVASSNGLGR
HWSGSAPASALDAKADAFAVLAAAGAPMAGLQIATGKALPAWLHPGRSGAIQIGPQNV
LGYFGELHPRVLEQLHADGPLVGFEVILDNIPAAKQRPTRAKPSLELSAFQPVSRDFA
FIVDRKVQAADIVRAAQSIDKKLISSVVVFDVYEGKGVDPDKKSVAIAVSLQPRDKTM
TDQEIDAVGAKIVAEVTKKTGGVLRG"
misc_feature complement(186000..188411)
/gene="pheT"
/locus_tag="RPD_0162"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:179078"
misc_feature complement(187965..188279)
/gene="pheT"
/locus_tag="RPD_0162"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:48399"
misc_feature complement(order(188052..188054,188061..188063,
188082..188084,188124..188126,188187..188189,
188229..188231))
/gene="pheT"
/locus_tag="RPD_0162"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:48399"
misc_feature complement(187254..187730)
/gene="pheT"
/locus_tag="RPD_0162"
/note="B3/4 domain; Region: B3_4; pfam03483"
/db_xref="CDD:202662"
misc_feature complement(187005..187205)
/gene="pheT"
/locus_tag="RPD_0162"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature complement(186333..186893)
/gene="pheT"
/locus_tag="RPD_0162"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:29814"
misc_feature complement(order(186549..186551,186660..186662,
186681..186683,186687..186689,186702..186704,
186732..186734,186774..186776,186807..186818,
186870..186878,186882..186884,186888..186890))
/gene="pheT"
/locus_tag="RPD_0162"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29814"
misc_feature complement(186870..186890)
/gene="pheT"
/locus_tag="RPD_0162"
/note="motif 1; other site"
/db_xref="CDD:29814"
misc_feature complement(186747..186758)
/gene="pheT"
/locus_tag="RPD_0162"
/note="motif 3; other site"
/db_xref="CDD:29814"
misc_feature complement(186003..186284)
/gene="pheT"
/locus_tag="RPD_0162"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; smart00896"
/db_xref="CDD:197964"
gene complement(188553..189137)
/locus_tag="RPD_0163"
/db_xref="GeneID:4020619"
CDS complement(188553..189137)
/locus_tag="RPD_0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567304.1"
/db_xref="GI:91974645"
/db_xref="InterPro:IPR007569"
/db_xref="GeneID:4020619"
/translation="MMKALSSPHDALPRPLAGEGWGEGDTGTELAMDDPKQPSWNVSP
SLRRHARELRKTSTDAERLMWSALRDKQLNGFSFRRQVPIGPFIADFACHSVKLVVEI
DGGQHFSDDAERADASRTALIEARGFRIVRFSNAEVMSNRDGVLQSIAAELAASAPTP
TLPRKRERERAKRAAKQRPEQIDSKQRPAAGDAD"
misc_feature complement(188676..189005)
/locus_tag="RPD_0163"
/note="Domain of unknown function, appears to be related
to a diverse group of endonucleases; Region:
Endonuclease_DUF559; cd01038"
/db_xref="CDD:29960"
misc_feature complement(order(188790..188792,188817..188819,
188868..188870,188955..188957))
/locus_tag="RPD_0163"
/note="putative active site [active]"
/db_xref="CDD:29960"
gene complement(189275..190357)
/gene="pheS"
/locus_tag="RPD_0164"
/db_xref="GeneID:4020620"
CDS complement(189275..190357)
/gene="pheS"
/locus_tag="RPD_0164"
/EC_number="6.1.1.20"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_567305.1"
/db_xref="GI:91974646"
/db_xref="InterPro:IPR002319"
/db_xref="InterPro:IPR004188"
/db_xref="InterPro:IPR004529"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4020620"
/translation="MSNLENLQTQILADIAASSDEAALEAVRVGALGKKGSISALLAT
LGKMDPEQRKTEGAAINLAKEAVTQALTARRDLLKAAALDAKLAAETIDVTLPLREPL
AEQGRIHPLSQVWDELTAIFADMGFAIAEGPDIETDDNNFTRLNFPEGHPAREMHDTF
YFNPKEDGSRLLLRTHTSPVQVRTMLSQRPPIRVICPGRTYRSDSDQTHTPMFHQVEG
LVIDKGSHLGHLKWILAEFCKAFFEVDNVNMRFRPSFFPFTEPSLEVDIQCRRGNGEI
RFGEGEDWLEILGCGMVHPNVLTACGIDPEVYQGFAWGMGIDRIAMLKYGMADLRQLF
EADSRWLNHYGFKPLDIPSLAGGLSS"
misc_feature complement(189326..190357)
/gene="pheS"
/locus_tag="RPD_0164"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:179046"
misc_feature complement(<190151..190312)
/gene="pheS"
/locus_tag="RPD_0164"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature complement(189341..190033)
/gene="pheS"
/locus_tag="RPD_0164"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:29807"
misc_feature complement(order(189344..189352,189356..189358,
189473..189478,189566..189568,189572..189580,
189599..189601,189662..189667,189671..189679,
189728..189730,189749..189751,189755..189757,
189761..189763,189767..189769,189779..189787,
189806..189808,189857..189859,189869..189883,
189893..189895,189908..189910,189959..189967,
189971..189976,189989..189991,190010..190015,
190022..190024,190031..190033))
/gene="pheS"
/locus_tag="RPD_0164"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29807"
misc_feature complement(189959..189979)
/gene="pheS"
/locus_tag="RPD_0164"
/note="motif 1; other site"
/db_xref="CDD:29807"
misc_feature complement(order(189368..189370,189401..189403,
189410..189421,189485..189502,189581..189586,
189590..189592,189707..189709,189713..189715,
189719..189721,189728..189736,189746..189748,
189752..189754,189815..189817,189824..189826,
189830..189832,189887..189895))
/gene="pheS"
/locus_tag="RPD_0164"
/note="active site"
/db_xref="CDD:29807"
misc_feature complement(189746..189757)
/gene="pheS"
/locus_tag="RPD_0164"
/note="motif 2; other site"
/db_xref="CDD:29807"
misc_feature complement(189401..189418)
/gene="pheS"
/locus_tag="RPD_0164"
/note="motif 3; other site"
/db_xref="CDD:29807"
gene complement(190501..190860)
/gene="rplT"
/locus_tag="RPD_0165"
/db_xref="GeneID:4020621"
CDS complement(190501..190860)
/gene="rplT"
/locus_tag="RPD_0165"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_567306.1"
/db_xref="GI:91974647"
/db_xref="InterPro:IPR005812"
/db_xref="InterPro:IPR005813"
/db_xref="GeneID:4020621"
/translation="MARVKRGVTAHAKHKKVYKLAKGFRGRRKNTIRAAKAAVDKAGQ
YAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAITE
PAAFQAIAEKAKAALAA"
misc_feature complement(190561..190860)
/gene="rplT"
/locus_tag="RPD_0165"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature complement(190552..190845)
/gene="rplT"
/locus_tag="RPD_0165"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature complement(order(190579..190587,190609..190611,
190618..190623,190630..190635,190651..190653,
190663..190665,190672..190680,190684..190728,
190735..190740,190750..190755,190762..190773,
190777..190800,190813..190824,190828..190845))
/gene="rplT"
/locus_tag="RPD_0165"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature complement(order(190555..190560,190576..190578,
190585..190596,190711..190713,190720..190725,
190729..190734,190741..190743,190753..190755))
/gene="rplT"
/locus_tag="RPD_0165"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature complement(order(190561..190563,190570..190572,
190579..190581,190651..190653,190657..190662,
190669..190671,190678..190683,190690..190692))
/gene="rplT"
/locus_tag="RPD_0165"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene complement(190948..191148)
/gene="rpmI"
/locus_tag="RPD_0166"
/db_xref="GeneID:4020622"
CDS complement(190948..191148)
/gene="rpmI"
/locus_tag="RPD_0166"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_567307.1"
/db_xref="GI:91974648"
/db_xref="InterPro:IPR001706"
/db_xref="GeneID:4020622"
/translation="MPKLKTKSGAKKRFKVTATGKVMSAQRGKRHGMIKRTKKQIRQL
RGTRVIFKTDGDNIKKYFLPNA"
misc_feature complement(190966..191148)
/gene="rpmI"
/locus_tag="RPD_0166"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:178913"
gene 191512..191937
/locus_tag="RPD_0167"
/db_xref="GeneID:4020623"
CDS 191512..191937
/locus_tag="RPD_0167"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567308.1"
/db_xref="GI:91974649"
/db_xref="GeneID:4020623"
/translation="MNAPARSHARRFFPGITRTGLLAAAALLAALVAASGDAEAAKRR
AGGNFDGVWNVVFATRAGNCGPTYNAPFAVQGRRVSSAGGGKVTGGITGGGNVAVRLS
VGASVANGRGRLAGNSGTGTWSGLIEGDRCSGTWQATRG"
gene complement(192320..192718)
/gene="infC"
/locus_tag="RPD_0168"
/db_xref="GeneID:4020624"
CDS complement(192320..192718)
/gene="infC"
/locus_tag="RPD_0168"
/note="IF-3 has several functions that are required and
promote translation initiation including; preventing
association of 70S by binding to 30S; monitoring
codon-anticodon interactions by promoting disassociation
of fMet-tRNA(fMet) from initiation complexes formed on
leaderless mRNAs or incorrectly bound noninitiatior tRNAs
and complexes with noncanonical start sites; stimulates
codon-anticodon interactions at P-site; involved in moving
mRNA to the P-site; and in recycling subunits"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_567309.1"
/db_xref="GI:91974650"
/db_xref="InterPro:IPR001288"
/db_xref="GeneID:4020624"
/translation="MAMEAGMDLVEISPNVSPPVCKIMDYGKFKYSAQKKAAEARKKQ
KIVEIKEIKLRPMIDDHDYDVKMKAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLE
KVKADVAEIAKVEQDARFEGRQVVMVLAPR"
misc_feature complement(192323..>192718)
/gene="infC"
/locus_tag="RPD_0168"
/note="translation initiation factor IF-3; Reviewed;
Region: infC; PRK00028"
/db_xref="CDD:178804"
misc_feature complement(192626..>192718)
/gene="infC"
/locus_tag="RPD_0168"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature complement(192326..192559)
/gene="infC"
/locus_tag="RPD_0168"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 193195..193992
/locus_tag="RPD_0169"
/db_xref="GeneID:4020625"
CDS 193195..193992
/locus_tag="RPD_0169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567310.1"
/db_xref="GI:91974651"
/db_xref="InterPro:IPR000379"
/db_xref="GeneID:4020625"
/translation="MTNSAAAPKGSDPAFISVGEGAAERRIAVRARAGHAPGLFWLGG
FNSDMTGTKAVALDGWAAERGRACVRFDYSGHGSSSGAFADGTISRWLEDSLAVFDRF
ATGPQVVIGSSMGGWMALLLARELIRRGGEGQTKLAGLVLIAPAPDFTEALMWKGFSP
EIRRQIETEGVWMRPSDYGDAYPITRALIEDGRNHLLLGGAISVGCPVRILQGKQDPD
VPWTHAFALTERLPCEDVVLTLIQDGDHRLSRPQDIARMLAAVEEIG"
misc_feature 193303..193974
/locus_tag="RPD_0169"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:30941"
gene complement(194098..195240)
/locus_tag="RPD_0170"
/db_xref="GeneID:4020626"
CDS complement(194098..195240)
/locus_tag="RPD_0170"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_567311.1"
/db_xref="GI:91974652"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4020626"
/translation="MAKQGQALGFDAIGICAPDSIPFALDRLRDYLASGFHGEMAWLA
DRPERRTDPRVMWSEVRSVVMLGVNYGPQSDPRHILGAKDRGAISVYAQGDDYHDVIK
ARLKQLARWLVATAGGEVKVFVDTAAVMEKPLAQAAGLGWQGKHSNLVSRELGSWLFL
GAIFTTLELPRDAAERDHCGSCRACLDSCPTAAFPEPYRLDARRCISYLTIEHKGPIP
HEFRQPIGNHIYGCDDCLAACPWNKFAQVGREAKLAARDALRAPALGELVRLDDAAFR
ALFTKSPVKRIGRDRFIRNVLIAIGNSGDAELAGEAERLLVDAHPVVRGAAVWALAQL
LPGDQFAALKAARLGDEPDESVRAEWVGALPSPLVGEGGTDAVRAG"
misc_feature complement(194242..195240)
/locus_tag="RPD_0170"
/note="Uncharacterized Fe-S protein [Energy production and
conversion]; Region: COG1600"
/db_xref="CDD:31788"
misc_feature complement(194863..195093)
/locus_tag="RPD_0170"
/note="Domain of unknown function (DUF1730); Region:
DUF1730; pfam08331"
/db_xref="CDD:149403"
gene complement(195300..195992)
/locus_tag="RPD_0171"
/db_xref="GeneID:4020627"
CDS complement(195300..195992)
/locus_tag="RPD_0171"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase-like protein"
/protein_id="YP_567312.1"
/db_xref="GI:91974653"
/db_xref="InterPro:IPR004046"
/db_xref="GeneID:4020627"
/translation="MYTLFHHPFCPQSRFVRLALGEHGLDLRLVEERSWERRTAFLAL
NPAGTTPVLVAEGQPPIPGAGVIAEFLDESHGAALGDRRLLPHGTAERIEVRRLLAWF
NEKFFEEASGPLVTERIYKRFMSEEDGGGPPAMDVIRAATANVRYHLAYIGWLARTRN
FLAGDRMTYADLAAAAHLSAIDYLGDVPWIEDEAAKAWYARIKSRPSFRPLLSEWLAG
VPASRTYVDLDF"
misc_feature complement(195360..195989)
/locus_tag="RPD_0171"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature complement(195777..195989)
/locus_tag="RPD_0171"
/note="Glutathione S-transferase (GST) family, N-terminal
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by catalyzing
the conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic...; Region: GST_N_family;
cd00570"
/db_xref="CDD:48493"
misc_feature complement(order(195786..195791,195798..195800,
195927..195932,195939..195944,195948..195953,
195957..195959))
/locus_tag="RPD_0171"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48493"
misc_feature complement(order(195801..195806,195840..195848,
195957..195959))
/locus_tag="RPD_0171"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48493"
misc_feature complement(order(195786..195788,195795..195800,
195804..195809,195846..195848))
/locus_tag="RPD_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48493"
misc_feature complement(195387..195710)
/locus_tag="RPD_0171"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cd00299"
/db_xref="CDD:198286"
misc_feature complement(order(195453..195455,195465..195467,
195474..195479,195486..195488,195684..195686,
195705..195707))
/locus_tag="RPD_0171"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature complement(order(195540..195542,195681..195683,
195690..195695,195702..195707))
/locus_tag="RPD_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature complement(order(195453..195455,195462..195464,
195654..195656,195672..195674,195684..195686))
/locus_tag="RPD_0171"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene 196204..197010
/locus_tag="RPD_0172"
/db_xref="GeneID:4020628"
CDS 196204..197010
/locus_tag="RPD_0172"
/EC_number="3.6.1.27"
/note="BacA; phosphatase activity in Escherichia coli not
kinase; involved in bacitracin resistance as bacitracin
supposedly sequesters undecaprenyl disphosphate which
reduces the pool of lipid carrier available to the cell"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate phosphatase"
/protein_id="YP_567313.1"
/db_xref="GI:91974654"
/db_xref="InterPro:IPR003824"
/db_xref="GeneID:4020628"
/translation="MLFDIFRAVILGVVEGVTEFLPVSSTGHLLLVGRFFNLGEDSFW
KSFAVLIQLGAILAILSIYFAKLWRIALGMFSDPAARRFVIGVLVAFLPAAMIGAVAG
SYIKLYLFNPWVVCFSLIVGGAILLWVDQLDLNPQQHDATAFPLPMYFYIGCAQCLAM
IPGVSRSGASIVAAMLFGADKRSAAEFSFFLAIPTMVGAFVYDFYKNRGEMTTDHLTI
VAIGFVVSFITAVIVVKTFLGYVTRHGFELFAWWRVIVGTLGLIALAMGR"
misc_feature 196204..197001
/locus_tag="RPD_0172"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:178958"
gene complement(197071..198036)
/locus_tag="RPD_0173"
/db_xref="GeneID:4020629"
CDS complement(197071..198036)
/locus_tag="RPD_0173"
/codon_start=1
/transl_table=11
/product="3-beta hydroxysteroid dehydrogenase/isomerase"
/protein_id="YP_567314.1"
/db_xref="GI:91974655"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR008030"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:4020629"
/translation="MNTNIDTLVTVFGGSGFIGRHVVSALARRDYRIRVAVRRPELAG
HLQPLGRVGQIHAVQANLRHPASVAAAMRGAHVAINLVGILAEGGAQKFDAVQAEGAA
AIAKAAAAVGARMVHVSAIGADANSPAGYARSKAAGEQAVLSAVPQATILRPSVVFGP
EDQFTNRFAALARISPVVPLVGADTKLQPVYVGDVATAVAEAVDGNTRPGATYELGGP
EQLTMREIIEIILETIDRKRMLLPLPFGLARMQAMLLQFAPGDLKLTPDQVELLKVDN
VVSDAAKSAGLTLQGLGVTPDSMQAIVPSYLWRFRKTGQFARKGA"
misc_feature complement(197389..198015)
/locus_tag="RPD_0173"
/note="NAD dependent epimerase/dehydratase family; Region:
Epimerase; pfam01370"
/db_xref="CDD:201754"
misc_feature complement(197209..198012)
/locus_tag="RPD_0173"
/note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
Region: NDUFA9_like_SDR_a; cd05271"
/db_xref="CDD:187579"
misc_feature complement(order(197566..197577,197632..197634,
197644..197646,197677..197685,197752..197754,
197788..197796,197920..197928,197983..197994,
197998..198000))
/locus_tag="RPD_0173"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187579"
misc_feature complement(order(197632..197634,197644..197646))
/locus_tag="RPD_0173"
/note="active site"
/db_xref="CDD:187579"
gene 198196..198282
/locus_tag="RPD_R0003"
/note="tRNA-Leu1"
/db_xref="GeneID:4020630"
tRNA 198196..198282
/locus_tag="RPD_R0003"
/product="tRNA-Leu"
/db_xref="GeneID:4020630"
gene 198454..199068
/locus_tag="RPD_0174"
/db_xref="GeneID:4020631"
CDS 198454..199068
/locus_tag="RPD_0174"
/codon_start=1
/transl_table=11
/product="3'-5' exonuclease"
/protein_id="YP_567315.1"
/db_xref="GI:91974656"
/db_xref="InterPro:IPR002562"
/db_xref="GeneID:4020631"
/translation="MTIRLHRGDLPDLSRYTNSVAIDTETMGLHPHRDRLCVVQLSNG
DGSADVVQIPQGHSDAPNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKI
ASRLTRTYTDRHGLKDLVRELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGL
REKLDAMLARENRTDLAQACFGFLPHRSRLDLDGWSEEDIFAHS"
misc_feature 198466..>199053
/locus_tag="RPD_0174"
/note="Ribonuclease D [Translation, ribosomal structure
and biogenesis]; Region: Rnd; COG0349"
/db_xref="CDD:30697"
misc_feature 198478..199011
/locus_tag="RPD_0174"
/note="DEDDy 3'-5' exonuclease domain of Ribonuclease D
and similar proteins; Region: RNaseD_exo; cd06142"
/db_xref="CDD:176654"
misc_feature order(198520..198531,198682..198687,198691..198699,
198796..198801,198898..198900,198910..198912)
/locus_tag="RPD_0174"
/note="putative active site [active]"
/db_xref="CDD:176654"
misc_feature order(198520..198522,198526..198528,198697..198699,
198898..198900,198910..198912)
/locus_tag="RPD_0174"
/note="catalytic site [active]"
/db_xref="CDD:176654"
misc_feature order(198523..198531,198682..198687,198691..198696,
198796..198801,198898..198900,198910..198912)
/locus_tag="RPD_0174"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176654"
gene 199311..200081
/locus_tag="RPD_0175"
/db_xref="GeneID:4020632"
CDS 199311..200081
/locus_tag="RPD_0175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567316.1"
/db_xref="GI:91974657"
/db_xref="GeneID:4020632"
/translation="MASVQTAAYHTSMEARFAAAARHSRLVRTLRVAVPLVVALSLAA
ILAISIFNPFRLLSKLPIDIGDLVVSGTKITMESPHLAGFTNDGRPYEMWARSATQDL
TSQDHVDLHTLRAKVVSDDQSTVLIQARDGKFNTKAQLLNLQKDVYLRTSTGSEAWMT
QADIDMGKGNVSSDEPVDVKWLGGTLRGQRLRITEKGDVIRFEGGVVMNLDNANLPEP
AEETDTRAQPAPAAVPNADAAAKSKSSQPGQRREVNRP"
misc_feature <199524..199955
/locus_tag="RPD_0175"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5375"
/db_xref="CDD:34939"
gene 200078..200743
/locus_tag="RPD_0176"
/db_xref="GeneID:4020633"
CDS 200078..200743
/locus_tag="RPD_0176"
/codon_start=1
/transl_table=11
/product="OstA-like protein"
/protein_id="YP_567317.1"
/db_xref="GI:91974658"
/db_xref="InterPro:IPR005653"
/db_xref="GeneID:4020633"
/translation="MTNARCLLARRKLLAIAGAAFLAGSANLSGALAQSAVQGVPNAM
QGFSQNRDQPIQIESDTLEVRDKKKEATFTGSVKVVQGDTTMTSKTLVVFYDQDQSET
SAKQAKRKAMPAAAPGPGGTSSIRRLEAKGNVVVTQKDQVVTGDSAVFDTKTNLVTML
GSVVLTQGKNVVRGDRLLVDMTTGVSRVESNSGRVQGLFQSSGSGSGAPLGIGPPPAG
QKK"
misc_feature 200243..200632
/locus_tag="RPD_0176"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:190815"
gene 200801..201754
/locus_tag="RPD_0177"
/db_xref="GeneID:4020634"
CDS 200801..201754
/locus_tag="RPD_0177"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567318.1"
/db_xref="GI:91974659"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020634"
/translation="MVDLLGMFRRRAAKPSGFGRTRMDITALQGEVGDMLTAPVRDAP
PVAHAGATEPTQTPTPAPARPRRPAATQPRESHTGYLAVHRVEKSFGTRKIVRGVSIY
VRRGEAVGLLGPNGAGKTTVFYMITGLIKADRGAIELDGHDVTKLPMYQRARLGIGYL
PQEASIFRGLNVEQNIRAVLEAVEPDKRKREAELDNLLHEFNIERLRKSPSIALSGGE
RRRVEIARALASRPNYMLLDEPFAGIDPIAVGDIQDLVRHLTNRGIGVLITDHNVRET
LGLTDRAYIVYAGEILTEGSPEEIVNNPDVRRLYLGEEFRL"
misc_feature 201041..201751
/locus_tag="RPD_0177"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:31332"
misc_feature 201041..201736
/locus_tag="RPD_0177"
/note="The ABC transporters belonging to the YhbG family
are similar to members of the Mj1267_LivG family, which is
involved in the transport of branched-chain amino acids.
The genes yhbG and yhbN are located in a single operon and
may function together in...; Region: ABC_YhbG; cd03218"
/db_xref="CDD:72977"
misc_feature 201137..201160
/locus_tag="RPD_0177"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72977"
misc_feature order(201146..201151,201155..201163,201284..201286,
201512..201517,201611..201613)
/locus_tag="RPD_0177"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72977"
misc_feature 201275..201286
/locus_tag="RPD_0177"
/note="Q-loop/lid; other site"
/db_xref="CDD:72977"
misc_feature 201440..201469
/locus_tag="RPD_0177"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72977"
misc_feature 201500..201517
/locus_tag="RPD_0177"
/note="Walker B; other site"
/db_xref="CDD:72977"
misc_feature 201524..201535
/locus_tag="RPD_0177"
/note="D-loop; other site"
/db_xref="CDD:72977"
misc_feature 201599..201619
/locus_tag="RPD_0177"
/note="H-loop/switch region; other site"
/db_xref="CDD:72977"
gene 201922..203562
/locus_tag="RPD_0178"
/db_xref="GeneID:4020635"
CDS 201922..203562
/locus_tag="RPD_0178"
/EC_number="2.7.7.6"
/note="sigma factors are initiation factors that promote
the attachment of RNA polymerase to specific initiation
sites and are then released; sigma 54 factor is
responsible for the expression of enzymes involved in
nitrogen assimilation and metabolism; the rhizobia often
have 2 copies of this sigma factor; in Rhizobium etli
RpoN1 shown to be involved in the assimilation of several
nitrogen and carbon sources during free-living aerobic
growth and RpoN2 is involved in symbiotic nitrogen
fixation; in Bradyrhizobium both RpoN1 and N2 are
functional in free-living and symbiotic conditions, rpoN1
gene was regulated in response to oxygen"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-54"
/protein_id="YP_567319.1"
/db_xref="GI:91974660"
/db_xref="InterPro:IPR000394"
/db_xref="InterPro:IPR007046"
/db_xref="InterPro:IPR007634"
/db_xref="GeneID:4020635"
/translation="MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLAVFVEDELE
KNPLLDRASDNAEPLVAGEASMDRAENAGDEFGGSEAGGEASDFADNAGGDSFEPGSE
EWMHRDLGSRSEIEQTLDTGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGY
NLEAFVAAETSLADHLSEQLAVALSSPSERMIGQYLIDLVDDAGYLPADLGEAAERLG
TTQTEVEAVVGVLQTFDPPGICARSLAECLAIQLRELDRFDPAMQALIEHLDLLAKRD
VVSLRKICGVDDEDLADMIGEIRHLDPKPGLKFNSSRVQTVVPDVFVRPGPDGGWLVE
LNSDTLPKVLVNQSYYSELSKTIRKDGDKSYFSDCLQTATWLVRALDQRARTILKVAT
EIVRQQDGFFTHGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFF
TASIASADGGEAHSAEAVRHHIRQLIDGEDPSAILSDDTIVERLRGAGIDIARRTVAK
YREAMRIPSSVQRRRDKHSMLGTALTAPADRSRDTAPA"
misc_feature 201928..203493
/locus_tag="RPD_0178"
/note="RNA polymerase factor sigma-54; Provisional;
Region: PRK12469"
/db_xref="CDD:183544"
misc_feature 201934..202080
/locus_tag="RPD_0178"
/note="Sigma-54 factor, Activator interacting domain
(AID); Region: Sigma54_AID; pfam00309"
/db_xref="CDD:201144"
misc_feature 202387..202971
/locus_tag="RPD_0178"
/note="Sigma-54 factor, core binding domain; Region:
Sigma54_CBD; pfam04963"
/db_xref="CDD:147239"
misc_feature 203008..203490
/locus_tag="RPD_0178"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:113327"
gene 203618..204226
/locus_tag="RPD_0179"
/db_xref="GeneID:4020636"
CDS 203618..204226
/locus_tag="RPD_0179"
/codon_start=1
/transl_table=11
/product="sigma 54 modulation protein/ribosomal protein
S30EA"
/protein_id="YP_567320.1"
/db_xref="GI:91974661"
/db_xref="InterPro:IPR003489"
/db_xref="GeneID:4020636"
/translation="MTIRVSGKSISVGEALRGRVSERTEEVLRKYFDGNYSGHITLSK
DGFGFRTDCSLHLDSGITLEAESNAADAYVSADQALLQIEKRLRRYKSRLKDRSSRKA
HAEATALAELTAPVDMPSYVIEAPGDEEHHEDAYNPVIIAEATTAMKRLSVSEAVVEL
DLTGAPVLIFLHGGSGRVNIIYRRADGNIGWIDPPSLNGAAA"
misc_feature 203624..203896
/locus_tag="RPD_0179"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature order(203627..203629,203633..203635,203639..203641,
203693..203695,203705..203707,203723..203728,
203738..203740,203750..203752,203777..203779,
203786..203788,203792..203800,203807..203809,
203813..203815,203822..203824,203828..203830,
203837..203839,203879..203884,203894..203896)
/locus_tag="RPD_0179"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene 204510..204971
/locus_tag="RPD_0180"
/db_xref="GeneID:4020637"
CDS 204510..204971
/locus_tag="RPD_0180"
/codon_start=1
/transl_table=11
/product="PTS IIA-like nitrogen-regulatory protein PtsN"
/protein_id="YP_567321.1"
/db_xref="GI:91974662"
/db_xref="InterPro:IPR002178"
/db_xref="InterPro:IPR006320"
/db_xref="GeneID:4020637"
/translation="MTITDLVAPEAVIPALKVISKKQALQELSARAAELSGQNERAVF
EVLLQREKLGTTAVGYGVAIPHGKLPKLERLFGLFARLERPIDFEAMDGQPVDLIFLL
LAPEGAGADHLKALARIARLLRDQDVAKKLRASRDAQAIYSVLALPPATVA"
misc_feature 204534..204944
/locus_tag="RPD_0180"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(204657..204659,204705..204707)
/locus_tag="RPD_0180"
/note="active site"
/db_xref="CDD:29266"
misc_feature 204705..204707
/locus_tag="RPD_0180"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene complement(205475..205741)
/locus_tag="RPD_0181"
/db_xref="GeneID:4020638"
CDS complement(205475..205741)
/locus_tag="RPD_0181"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567322.1"
/db_xref="GI:91974663"
/db_xref="InterPro:IPR009531"
/db_xref="GeneID:4020638"
/translation="MAELGTNHENVRVTPEALAHLGEGHIAYVKQIRSEDVPGLFPQA
PQIAPGLKLFALHSADGTPIMLTDSREAAVANAWSQELQAVSVH"
misc_feature complement(205478..205708)
/locus_tag="RPD_0181"
/note="Protein of unknown function (DUF1150); Region:
DUF1150; pfam06620"
/db_xref="CDD:148304"
gene complement(205792..206217)
/locus_tag="RPD_0182"
/db_xref="GeneID:4020639"
CDS complement(205792..206217)
/locus_tag="RPD_0182"
/codon_start=1
/transl_table=11
/product="heat shock protein Hsp20"
/protein_id="YP_567323.1"
/db_xref="GI:91974664"
/db_xref="InterPro:IPR002068"
/db_xref="GeneID:4020639"
/translation="MSRVPTLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERGN
GDPEKLRITLAVAGFTRDQLDVTIEENQLVIRGRQQDDKTRQYIHRGIAARHFQRTFV
LAEGMQVLGADLKNGLLSIDLVRPEPERVIKTIAITEHE"
misc_feature complement(205807..206184)
/locus_tag="RPD_0182"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature complement(205843..206121)
/locus_tag="RPD_0182"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature complement(order(205864..205869,205921..205923,
206044..206049,206053..206055,206059..206061,
206101..206115))
/locus_tag="RPD_0182"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene complement(206368..207462)
/gene="ugpC"
/locus_tag="RPD_0183"
/db_xref="GeneID:4020640"
CDS complement(206368..207462)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="part of the UgpABCE glycerol-3-phosphate uptake
system"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate transporter ATP-binding
subunit"
/protein_id="YP_567324.1"
/db_xref="GI:91974665"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020640"
/translation="MANVVLRNVRKTYPGGFEAIKGVDLEVGDGQFCVLVGPSGCGKS
TLLRMVAGLETITAGEIDIGGRVVNDVEPADRDIAMVFQNYALYPHMSVYNNMAYGLR
NRGMAKPEIEARVQEAARILEIGAMLDRKPRQLSGGQRQRVAMGRAIVRQPKVFLFDE
PLSNLDAKLRVAMRVEIRKLQRRLSTTAIYVTHDQLEAMTLADILVVMNAGQVEQIGS
PLDVYAKPATTFVASFIGAPPMNLIPLDAEGVRARFGGAVTEAGVLGVRPEDLAISSE
PPAPGGLTLDLAVEAIERVGPETFVYGTRSPGGDLAAISSKPGELPPDEIIIRIPGQE
APAIGQRISVVALRHNLHLFSADGRRRIAV"
misc_feature complement(206377..207462)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature complement(206812..207453)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature complement(207331..207354)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature complement(order(206884..206886,206983..206988,
207214..207216,207328..207336,207340..207345))
/gene="ugpC"
/locus_tag="RPD_0183"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature complement(207214..207225)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature complement(207031..207060)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature complement(206983..207000)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature complement(206965..206976)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature complement(206878..206898)
/gene="ugpC"
/locus_tag="RPD_0183"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
gene complement(207468..208316)
/locus_tag="RPD_0184"
/db_xref="GeneID:4020641"
CDS complement(207468..208316)
/locus_tag="RPD_0184"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport systems
inner membrane component"
/protein_id="YP_567325.1"
/db_xref="GI:91974666"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4020641"
/translation="MVEHRKFGNLLPHLVLWTGVLIVAFPVYIAFVASTQDNATIANG
QMSLLPGGHFLETYYKTLFVGTSGTTREPVGTMLFNSFVMAMMIAVGKIAISLISAYA
IVYFRFPFRMTIFWLIFITLMLPVEVRIYPTYKIVADLHLLDSYAGLTLPLIASATAT
LLFRQFFMTVPDELLEASRIDGAGPFRFFWDTLLPLSRTNMAALFVILFILGWNQYLW
PLLITTRDDMQTIQIGIRKMIVTSDALTEWPVVMATAILAMLPPVAVVVLMQKLFVRG
LVETEK"
misc_feature complement(207477..208304)
/locus_tag="RPD_0184"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature complement(207549..208085)
/locus_tag="RPD_0184"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(207552..207557,207561..207566,
207573..207578,207606..207608,207612..207614,
207654..207659,207666..207677,207696..207698,
207705..207710,207750..207752,207801..207803,
207810..207815,207825..207827,207831..207836,
207843..207845,207849..207851,207915..207917,
207921..207926,207933..207962,207966..207977,
208005..208007,208020..208025,208032..208037))
/locus_tag="RPD_0184"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(207660..207677,207915..207959))
/locus_tag="RPD_0184"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(207576..207578,207606..207608,
207618..207620,207657..207659,207855..207857,
207915..207917))
/locus_tag="RPD_0184"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(207729..207731,207741..207746,
207762..207800))
/locus_tag="RPD_0184"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(208316..209230)
/locus_tag="RPD_0185"
/db_xref="GeneID:4020642"
CDS complement(208316..209230)
/locus_tag="RPD_0185"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport systems
inner membrane component"
/protein_id="YP_567326.1"
/db_xref="GI:91974667"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4020642"
/translation="MTAVRAGRSRIMQKQSVFHSKFLPYMLVLPQLAVVLVFFYWPAV
QAVIQSFLLQDAFGLSTTFVWFDNYRELLSDPDYFSAILRTFLFSVAIALSSLSLALL
LAVMADRPLRGSTFYRTLLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRAIGIDWNP
LLDGNQAATLIILAAAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIF
PLLSPTIFFLIVVNIVYAFFETFGIIDTMTRGGPAKATETLVYKVYSDGLLGGNLGSS
AAQSVILMGIVIALTAFQFRFVERKVNY"
misc_feature complement(208328..209161)
/locus_tag="RPD_0185"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature complement(<208502..>208774)
/locus_tag="RPD_0185"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(208571..208573,208583..208588,
208604..208642))
/locus_tag="RPD_0185"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(209323..210648)
/locus_tag="RPD_0186"
/db_xref="GeneID:4020643"
CDS complement(209323..210648)
/locus_tag="RPD_0186"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_567327.1"
/db_xref="GI:91974668"
/db_xref="InterPro:IPR006059"
/db_xref="GeneID:4020643"
/translation="MAFRFFGPTAAATAIAATLAIATPAHAATEIQWWHAMTGGNNDV
VVKLANDFNAAQSDYKVVPSYKGGYADTMNAGIAAFRAGNAPHIMQVFEVGTATMMAA
TGAVKPVYKLMQETGEPFDAKAYLPAITGYYSTSKGEMLSFPFNSSSMVMWVNLDALK
KADIAEIPKTWPEVFEGAKKLKAAGYATCGFSTAWVTWAHVEQLSAWHNVPLASKANG
LDGFDTKLEFNGPVQVKHLDKLIELQKDKTFDYSGRTNTGEGRFTSGECPLFLTSSGF
FGNVKSQAKFNWTSAPMPYYPDVKGAPQNSIIGGASLWVMGGKTPEEYKGVAKFLAFL
SDTDRQVAVHKASGYLPITMAAYEKAKAEGFYKEAPYLETPIKELTNKPPTENSRGLR
LGNMVQLRDLWAEEIEQALAGKKTAKEALDAAVTRGNTMLRQFEKTAVK"
misc_feature complement(209332..210561)
/locus_tag="RPD_0186"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature complement(209344..210561)
/locus_tag="RPD_0186"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
gene complement(210854..212059)
/locus_tag="RPD_0187"
/db_xref="GeneID:4020644"
CDS complement(210854..212059)
/locus_tag="RPD_0187"
/EC_number="2.8.3.16"
/codon_start=1
/transl_table=11
/product="L-carnitine dehydratase/bile acid-inducible
protein F"
/protein_id="YP_567328.1"
/db_xref="GI:91974669"
/db_xref="InterPro:IPR003673"
/db_xref="GeneID:4020644"
/translation="MTAALMPGAMAGLRVIDLTRVLGGPYCTQILADHGADVIKVEPP
AGDEVRDWGPPFHDDDAAYFIGINRNKRSIGLDLASPGGRDVLLEMLKDADVLIENFK
PGTLDKWGLGNDIVREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSP
ESGPMRIGVPLVDITTGLYAAIGILMALSERQRSGKGQFLETTLYETGLAIMHPHTAN
YFLHGKPPALTGNEHPNLVPYAIFEARDGKIFTGVGNDGTFRKLCKEIGKPELGTDPR
FARNKDRIANRAALRTELEAVFRQHDAAPLCDRLLDAGLPAGPVQSIDKALTSPHTTH
RGDVIEQDWYKGVASPIRFERTKASLRGLPPKFSQHAGEVLGEFGYSPDEISKLVADG
VVSGPERKR"
misc_feature complement(210878..212044)
/locus_tag="RPD_0187"
/note="Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion]; Region:
CaiB; COG1804"
/db_xref="CDD:31989"
misc_feature complement(211310..211840)
/locus_tag="RPD_0187"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:202268"
gene complement(212220..212295)
/locus_tag="RPD_R0004"
/note="tRNA-Ala4"
/db_xref="GeneID:4020645"
tRNA complement(212220..212295)
/locus_tag="RPD_R0004"
/product="tRNA-Ala"
/db_xref="GeneID:4020645"
gene complement(212363..212821)
/locus_tag="RPD_0188"
/db_xref="GeneID:4020646"
CDS complement(212363..212821)
/locus_tag="RPD_0188"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567329.1"
/db_xref="GI:91974670"
/db_xref="InterPro:IPR012644"
/db_xref="GeneID:4020646"
/translation="MATSQVKHRFSRNPKVAQVAKSDLGTKRICPTTGKKFYDLNKNP
VISPYTGEVVPIAPVVAPRTRADSRSAAAPAAAEAPEAMEAEELVSLEEADAEEKTGK
VKAIVPESEDDIEIDESIEDDDDSTFIADEEEGDEDVTDIIGDVSGDEET"
misc_feature complement(212375..212767)
/locus_tag="RPD_0188"
/note="TIGR02300 family protein; Region: FYDLN_acid"
/db_xref="CDD:131353"
misc_feature complement(<212618..212764)
/locus_tag="RPD_0188"
/note="Protein of unknown function (FYDLN_acid); Region:
FYDLN_acid; pfam09538"
/db_xref="CDD:204267"
gene 212916..214253
/locus_tag="RPD_0189"
/db_xref="GeneID:4020647"
CDS 212916..214253
/locus_tag="RPD_0189"
/EC_number="2.5.1.19"
/note="catalyzes the formation of
5-O-(1-carboxyvinyl)-3-phosphoshikimate from
phosphoenolpyruvate and 3-phosphoshikimate in tryptophan
biosynthesis"
/codon_start=1
/transl_table=11
/product="3-phosphoshikimate 1-carboxyvinyltransferase"
/protein_id="YP_567330.1"
/db_xref="GI:91974671"
/db_xref="InterPro:IPR001986"
/db_xref="InterPro:IPR006264"
/db_xref="GeneID:4020647"
/translation="MSHSDQTSPLEARKSAALSGTARVPGDKSISHRALILGALAVGE
TRISGLLEGQDVIDTGKAMRALGARVERTGEFAWTVRGVGVAGFAQPEAPLDFGNSGT
GCRLAMGAVAGSPITATFDGDASLRSRPMRRIVDPLEQMGARVIQSHEGGRLPLTLQG
ARDPLPITYRTPVPSAQIKSAVLLAGLSAPGVTTVIEAEASRDHTELMLQHFGATLVT
EPEGAHGRKISLTGQPELRGARVVVPADPSSAAFPMVAALLVPGSDIVLTEVMTNPLR
TGLITTLREMGGAIEESETRDDTGEPMAQFRIRGSRLRGVEVPPERAPSMIDEYLVLA
VAAAFAEGTTVMRGLHELRVKESDRLEATADMLRVNGVKVEIVGDDLIVEGKGHVPGG
GLVATHMDHRIAMSALVMGLAADRPVKVDDTAFIATSFPDFVPMMRRLGGELA"
misc_feature 212967..214235
/locus_tag="RPD_0189"
/note="EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP)
to form...; Region: EPSP_synthase; cd01556"
/db_xref="CDD:30129"
misc_feature 212973..214244
/locus_tag="RPD_0189"
/note="3-phosphoshikimate 1-carboxyvinyltransferase;
Region: aroA; TIGR01356"
/db_xref="CDD:162316"
misc_feature order(212985..212996,213642..213653)
/locus_tag="RPD_0189"
/note="hinge; other site"
/db_xref="CDD:30129"
misc_feature order(212997..213002,213012..213014,213210..213212,
213216..213221,213300..213302,213438..213446,
213507..213509,213516..213518,213897..213899,
213966..213968,213978..213983,213990..213992,
214116..214121,214197..214199)
/locus_tag="RPD_0189"
/note="active site"
/db_xref="CDD:30129"
gene complement(214271..214945)
/locus_tag="RPD_0190"
/db_xref="GeneID:4020648"
CDS complement(214271..214945)
/locus_tag="RPD_0190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567331.1"
/db_xref="GI:91974672"
/db_xref="InterPro:IPR007172"
/db_xref="GeneID:4020648"
/translation="MATPAFVKRILRSDAFQWTAVIPAAIYFQFVMWTGRFDRAPFPI
AEPYILAMWHGRLNMLPMLRNGSKPLVALISGHRDGQIISKAGTVFGIQTAVGSSSKG
GMRAAREMLRLARDGHSLFVTPDGPRGPRMHINNDGILDLARLTGLPILPVAVSLQRG
KLLRSWDRLMLPGLFSRVAIRFGEPVIVDADADRAEIRARLSASLTAAQQETDRLVGR
IPVEPA"
misc_feature complement(214382..214858)
/locus_tag="RPD_0190"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature complement(order(214562..214570,214715..214726,
214769..214771,214775..214777,214784..214786))
/locus_tag="RPD_0190"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene 215116..215754
/gene="cmk"
/locus_tag="RPD_0191"
/db_xref="GeneID:4020649"
CDS 215116..215754
/gene="cmk"
/locus_tag="RPD_0191"
/EC_number="2.7.4.14"
/note="Catalyzes the formation of (d)CDP from ATP and
(d)CMP"
/codon_start=1
/transl_table=11
/product="cytidylate kinase"
/protein_id="YP_567332.1"
/db_xref="GI:91974673"
/db_xref="InterPro:IPR003136"
/db_xref="InterPro:IPR011769"
/db_xref="InterPro:IPR011994"
/db_xref="GeneID:4020649"
/translation="MIIAIDGPAASGKGTLGKRLAAHYGFRHLDTGVIYRAVAKALLD
GGADLTDEARAVAAARKLDPGIFGDPALKSQTVGDAASVISAYAPLREALVSFQRQFA
ADPPGAVLDGRDIGTVICPDADVKIFVIADPVVRARRRTLEALARGEAADEARVLADI
LKRDERDRNRSAAPLTQAPDAVLLDNSNLDIEGGVRAAIDIVEAVRAGRRRV"
misc_feature 215116..215739
/gene="cmk"
/locus_tag="RPD_0191"
/note="cytidylate kinase; Provisional; Region: cmk;
PRK00023"
/db_xref="CDD:178800"
misc_feature 215119..215676
/gene="cmk"
/locus_tag="RPD_0191"
/note="Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate (CMP)
to produce cytidine diphosphate (CDP), using ATP as the
preferred phosphoryl donor; Region: CMPK; cd02020"
/db_xref="CDD:73296"
misc_feature order(215386..215388,215452..215457,215623..215625)
/gene="cmk"
/locus_tag="RPD_0191"
/note="CMP-binding site; other site"
/db_xref="CDD:73296"
misc_feature order(215602..215604,215614..215616)
/gene="cmk"
/locus_tag="RPD_0191"
/note="The sites determining sugar specificity; other
site"
/db_xref="CDD:73296"
gene 216049..217746
/gene="rpsA"
/locus_tag="RPD_0192"
/db_xref="GeneID:4020650"
CDS 216049..217746
/gene="rpsA"
/locus_tag="RPD_0192"
/note="in Escherichia coli this protein is involved in
binding to the leader sequence of mRNAs and is itself
bound to the 30S subunit; autoregulates expression via a
C-terminal domain; in most gram negative organisms this
protein is composed of 6 repeats of the S1 domain while in
gram positive there are 4 repeats; the S1 nucleic
acid-binding domain is found associated with other
proteins"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S1"
/protein_id="YP_567333.1"
/db_xref="GI:91974674"
/db_xref="InterPro:IPR000110"
/db_xref="InterPro:IPR003029"
/db_xref="GeneID:4020650"
/translation="MASTDTYNPTRDDFAAMLDESFAGGNLQESSVIKGIVVAIEKDM
AVIDVGLKTEGRVALREFAGPGRESELKVGDTVEVFLDRIENALGEAVLSRDKARREE
SWGKLEKAFQGNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVAPLMNNS
QPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFV
DLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPW
QGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTS
QEVDVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKYPVGSTVEGEVKNKTEFGLFLGL
DGDVDGMVHLSDLDWKQPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEGDPF
AEPGDVKKGAIVTCEVLDVKESGIDVQIVGTDFATFIKRSELARDRNDQRSDRFAVGE
KVDARVIQFDKKARKVQVSIKALEVAEEKEAIAQYGSSDSGATLGDILGTALKQRDK"
misc_feature 216049..217737
/gene="rpsA"
/locus_tag="RPD_0192"
/note="30S ribosomal protein S1; Reviewed; Region: rpsA;
PRK06299"
/db_xref="CDD:180520"
misc_feature 216139..216336
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec1_hs1; cd05687"
/db_xref="CDD:88442"
misc_feature order(216160..216162,216184..216186,216214..216216,
216220..216222)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88442"
misc_feature 216388..216588
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec2_hs2; cd04465"
/db_xref="CDD:88430"
misc_feature order(216412..216414,216436..216438,216463..216465,
216469..216471)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88430"
misc_feature 216646..216849
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec3; cd05688"
/db_xref="CDD:88443"
misc_feature order(216673..216675,216697..216699,216724..216726,
216730..216732)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88443"
misc_feature 216895..217110
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(216928..216930,216952..216954,216982..216984,
216988..216990)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 217165..217371
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(217189..217191,217213..217215,217243..217245,
217249..217251)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 217423..217644
/gene="rpsA"
/locus_tag="RPD_0192"
/note="S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec6; cd05691"
/db_xref="CDD:88446"
misc_feature order(217447..217449,217471..217473,217504..217506,
217510..217512)
/gene="rpsA"
/locus_tag="RPD_0192"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88446"
gene 217997..218977
/locus_tag="RPD_0193"
/db_xref="GeneID:4020651"
CDS 217997..218977
/locus_tag="RPD_0193"
/codon_start=1
/transl_table=11
/product="signal peptide peptidase SppA, 36K type"
/protein_id="YP_567334.1"
/db_xref="GI:91974675"
/db_xref="InterPro:IPR002142"
/db_xref="InterPro:IPR004635"
/db_xref="GeneID:4020651"
/translation="MSLDSDVIVDRRRIRRKLTFWRVAAVLVAIVAVVAVGAMVSPAG
QGGLATSSSIARIKIDGLIRSNSERVEALERLEKSQSAAVIVHINSPGGTTAGSEELY
NALMRLKAKKPMVVVVEGLAASGGYIAALASDHIIAQQSSLVGSIGVLFQYPNVSELM
KTVGVKVEEVKSSPLKAAPNGFEPTSPEARAALESLVRDSYAWFRDMVKQRRSMDDNQ
LGVVADGRVFTGRQALGLKLIDELGDEKTAVAWLETEKKIKSGLPVRDFKLSPQFGDL
AFLRVAASVTLDALGLGAIARQIEQSGAVQSVERLGLDGMLALWAPGGSR"
misc_feature 218156..218767
/locus_tag="RPD_0193"
/note="signal peptide peptidase SppA, 36K type; Region:
SppA_dom; TIGR00706"
/db_xref="CDD:129789"
misc_feature 218156..218755
/locus_tag="RPD_0193"
/note="Signal peptide peptidase A (SppA), a serine
protease, has catalytic Ser-Lys dyad; Region:
S49_Sppa_N_C; cd07023"
/db_xref="CDD:132934"
misc_feature order(218174..218176,218255..218257,218366..218368,
218411..218413,218417..218419,218441..218452,
218597..218599,218669..218677,218681..218683,
218690..218692)
/locus_tag="RPD_0193"
/note="tandem repeat interface [polypeptide binding];
other site"
/db_xref="CDD:132934"
misc_feature order(218216..218218,218291..218293,218486..218488,
218492..218506,218591..218593,218603..218605)
/locus_tag="RPD_0193"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132934"
misc_feature 218366..218368
/locus_tag="RPD_0193"
/note="active site residues [active]"
/db_xref="CDD:132934"
gene 219124..219429
/gene="ihfB"
/locus_tag="RPD_0194"
/db_xref="GeneID:4020652"
CDS 219124..219429
/gene="ihfB"
/locus_tag="RPD_0194"
/note="This protein is one of the two subunits of
integration host factor, a specific DNA-binding protein
that functions in genetic recombination as well as in
transcriptional and translational control"
/codon_start=1
/transl_table=11
/product="integration host factor subunit beta"
/protein_id="YP_567335.1"
/db_xref="GI:91974676"
/db_xref="InterPro:IPR000119"
/db_xref="InterPro:IPR005685"
/db_xref="GeneID:4020652"
/translation="MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVE
LRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFFKTGKEMRERLNREPGNTDTGA"
misc_feature 219130..219390
/gene="ihfB"
/locus_tag="RPD_0194"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(219130..219132,219139..219141,219148..219150,
219160..219162,219205..219207,219214..219219,
219226..219231,219241..219255,219262..219267,
219280..219282,219346..219351,219361..219363,
219367..219369,219388..219390)
/gene="ihfB"
/locus_tag="RPD_0194"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(219130..219135,219202..219204,219247..219249,
219253..219255,219259..219264,219271..219273,
219283..219285,219289..219294,219298..219300,
219307..219318,219346..219348,219358..219360,
219364..219366,219373..219375)
/gene="ihfB"
/locus_tag="RPD_0194"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 219442..219855
/locus_tag="RPD_0195"
/db_xref="GeneID:4020653"
CDS 219442..219855
/locus_tag="RPD_0195"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567336.1"
/db_xref="GI:91974677"
/db_xref="InterPro:IPR001356"
/db_xref="GeneID:4020653"
/translation="MRGKASENDMQKFLTALVLIPLGLIFIVFAVANRHLVTVSFDPL
EPLNPMGTVQMPLFVLIIGVAILGVIAGGVATWVRQRHWRRAARRHQAEAIQAQTQLA
NLRASVVTPAQSEPKRLLLGQGSAAGRRDKTSAAL"
gene 219911..220567
/locus_tag="RPD_0196"
/db_xref="GeneID:4020654"
CDS 219911..220567
/locus_tag="RPD_0196"
/EC_number="5.3.1.24"
/note="catalyzes the formation of
1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate
from N-(5-phospho-beta-D-ribosyl)-anthranilate in
tryptophan biosynthesis"
/codon_start=1
/transl_table=11
/product="N-(5'-phosphoribosyl)anthranilate isomerase"
/protein_id="YP_567337.1"
/db_xref="GI:91974678"
/db_xref="InterPro:IPR001240"
/db_xref="InterPro:IPR003009"
/db_xref="GeneID:4020654"
/translation="MSVVVKICGLSTCDTLEAAVAAGADMVGFVFFPASPRHVGLDVA
RELSDQVGSRAAKVALTVDASDALIRDIVEILKPDLLQLHGSESPERVRALKQAFGLP
VMKAIAVATAADLAMLPAYAETADRILFDARPPKDATRPGGLGMTFDWELLRDLDLSL
PFMVSGGVNPGNVAAALRVTGAGGVDVSSGVERAPGAKDPELIRSFIRAARASEELMT
"
misc_feature 219923..220540
/locus_tag="RPD_0196"
/note="Phosphoribosylanthranilate isomerase (PRAI)
catalyzes the fourth step of the tryptophan biosynthesis,
the conversion of N-(5'- phosphoribosyl)-anthranilate
(PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose
5-phosphate (CdRP). Most PRAIs are monomeric; Region:
PRAI; cd00405"
/db_xref="CDD:73365"
misc_feature order(219926..219928,219932..219934,219998..220000,
220154..220156,220160..220162,220301..220303,
220466..220468,220472..220477)
/locus_tag="RPD_0196"
/note="active site"
/db_xref="CDD:73365"
gene 220569..221783
/locus_tag="RPD_0197"
/db_xref="GeneID:4020655"
CDS 220569..221783
/locus_tag="RPD_0197"
/EC_number="4.2.1.20"
/note="catalyzes the formation of L-tryptophan from
L-serine and 1-(indol-3-yl)glycerol 3-phosphate"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_567338.1"
/db_xref="GI:91974679"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR006653"
/db_xref="InterPro:IPR006654"
/db_xref="GeneID:4020655"
/translation="MNQILPNSFRSGPDERGHFGIFGGRFVAETLMPLILELEKAYAE
AKDDPAFRTEMDGYLKHYVGRPSPLYFAERLTEHFGGAKIYFKREDLNHTGAHKVNNV
LGQIMLARRMGKQRIIAETGAGMHGVATATMCAKFGLQCVVYMGAVDVERQQPNVLRM
KALGAEVRPVTSGANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQEV
IGQEVREQILETEGRLPDSLIACIGGGSNAMGLFHPFLDDAGVVIYGVEAAGHGLSKL
HAASIAGGKPGVLHGNRTYLLMDDDGQIQEAHSISAGLDYPGIGPEHAWLHDVGRVNF
LSATDAEALDAFKLCCRLEGIIPALEPAHALAKVADLAPILPKDHLMVLNMSGRGDKD
LASVAEHLGGKF"
misc_feature 220617..221768
/locus_tag="RPD_0197"
/note="tryptophan synthase, beta subunit; Region: trpB;
TIGR00263"
/db_xref="CDD:161793"
misc_feature 220677..221756
/locus_tag="RPD_0197"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature order(220857..220862,220941..220943,221169..221171,
221295..221309,221646..221648,221724..221726)
/locus_tag="RPD_0197"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature 220860..220862
/locus_tag="RPD_0197"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene 221783..222619
/gene="trpA"
/locus_tag="RPD_0198"
/db_xref="GeneID:4020656"
CDS 221783..222619
/gene="trpA"
/locus_tag="RPD_0198"
/EC_number="4.2.1.20"
/note="catalyzes the formation of indole and
glyceraldehyde 3-phosphate from indoleglycerol phosphate
in tryptophan biosynthesis"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit alpha"
/protein_id="YP_567339.1"
/db_xref="GI:91974680"
/db_xref="InterPro:IPR002028"
/db_xref="InterPro:IPR003009"
/db_xref="GeneID:4020656"
/translation="MTTRIDTRFAELKKQGRSAFVTFVMAGDPDLATSLQVLKALPAA
GADIIEIGMPFTDPMADGPAIQAAGLRALHSGATLSHTLGLVRDFRKDDDTTPMVLMG
YYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDSELCLPAMKAGLNFIRLATPTTD
EKRLPAVLANTSGFVYYVSITGITGSASADSAAVGDAVARIKRHTDLPVCVGFGIRTP
EAARAIAAEADGAVVGSALIDALQKSLDADNRATKATVGAVADLVASLAAGVRGAKQA
AE"
misc_feature 221801..222598
/gene="trpA"
/locus_tag="RPD_0198"
/note="tryptophan synthase subunit alpha; Provisional;
Region: trpA; PRK13111"
/db_xref="CDD:183865"
misc_feature 221837..222583
/gene="trpA"
/locus_tag="RPD_0198"
/note="Ttryptophan synthase (TRPS) alpha subunit (TSA).
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2
beta subunits) that catalyzes the last two steps of
L-tryptophan biosynthesis. Alpha and beta subunit catalyze
two distinct reactions which are both...; Region:
Tryptophan_synthase_alpha; cd04724"
/db_xref="CDD:73386"
misc_feature order(221930..221932,221963..221965,221975..221977,
222308..222310,222332..222337,222419..222424,
222482..222487)
/gene="trpA"
/locus_tag="RPD_0198"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73386"
misc_feature order(221930..221932,221963..221965,222089..222091,
222332..222334)
/gene="trpA"
/locus_tag="RPD_0198"
/note="active site"
/db_xref="CDD:73386"
misc_feature order(221930..221932,221963..221965,222089..222091)
/gene="trpA"
/locus_tag="RPD_0198"
/note="catalytic residues [active]"
/db_xref="CDD:73386"
misc_feature order(221945..221956,221960..221962,221969..221971,
221978..221983,222095..222097,222104..222106,
222170..222175,222179..222181,222188..222190,
222248..222250,222254..222262,222269..222271)
/gene="trpA"
/locus_tag="RPD_0198"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73386"
gene 222727..223695
/locus_tag="RPD_0199"
/db_xref="GeneID:4020657"
CDS 222727..223695
/locus_tag="RPD_0199"
/EC_number="6.4.1.2"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer of AccA2D2 subunits"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase subunit beta"
/protein_id="YP_567340.1"
/db_xref="GI:91974681"
/db_xref="InterPro:IPR000438"
/db_xref="InterPro:IPR001202"
/db_xref="InterPro:IPR011762"
/db_xref="GeneID:4020657"
/translation="MNWLTNVVRPKIRNILRRETPENLWIKCPDTGQLVFYKDVEQNQ
FVIPGSNYHMRMGALARLRSVFDNETWYDVALPEVTADPLKFRDERKYADRIKDARTK
TGAHDAVKVGYGKLEGLGVVAAVQDFDFMGGSLGMAAGEAIIRGLELAVEKHAPFIMF
AASGGARMQEGILSLMQMPRTTVAVQMLREAGLPYIVVLTNPTTGGVTASYAMLGDIQ
LAEPGALIGFAGARVIEQTIREKLPDGFQRAEYLRDHGMVDMVVHRHELRPTLARLCR
ILTKTPLPAVEEIAASDDAAQDAEAAAATEIVVTPPEAPSPTAPQA"
misc_feature 222727..223572
/locus_tag="RPD_0199"
/note="acetyl-CoA carboxylase subunit beta; Validated;
Region: PRK05654"
/db_xref="CDD:180184"
misc_feature 223045..>223434
/locus_tag="RPD_0199"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene 223692..225038
/locus_tag="RPD_0200"
/db_xref="GeneID:4020658"
CDS 223692..225038
/locus_tag="RPD_0200"
/EC_number="6.3.2.17"
/codon_start=1
/transl_table=11
/product="FolC bifunctional protein"
/protein_id="YP_567341.1"
/db_xref="GI:91974682"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4020658"
/translation="MSAATAPQPSALVGELRARLAQLHPAQIDLTLGRIERLLAALDH
PQRRLPPVIHIAGTNGKGSTLAFLRAILEAAGLSVHAYTSPHLVRVNETVRLGRPGGG
ALVSDDEFAAALAHCERVNQGAPITLFEIETAAALWLFAQHPADVTLLEVGLGGRLDA
TNVIDQPLACVLTPIGIDHTEFLGPTLADIAAEKAGIIRRGVPVIVAGQQNDAMDVIE
REAERLRAPLHARGQQWHVEVEHGRLAYQDDRGLMDLTAPKLFGRHQIDNAWLAIATL
RAQQRFTFDQAAYQAGLLSADWPARMQRLTTGRLIDEAPPGSELWLDGGHNADGGRVA
AAALGDLEERVSRPLVIIAGMMANKDASAFLTNFTGLTRHVIAVPIPDRDGAMPPEKL
ADAGRALGLRVELADSVEAALSRIAGLAYELPPRILITGSLYLAGHVLRLNGTMPS"
misc_feature 223785..225017
/locus_tag="RPD_0200"
/note="folylpolyglutamate synthase/dihydrofolate synthase;
Region: folC; TIGR01499"
/db_xref="CDD:200112"
gene complement(225390..225710)
/locus_tag="RPD_0201"
/db_xref="GeneID:4020659"
CDS complement(225390..225710)
/locus_tag="RPD_0201"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_567342.1"
/db_xref="GI:91974683"
/db_xref="InterPro:IPR005746"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR006663"
/db_xref="GeneID:4020659"
/translation="MSVGKVSDADFETEVLKAQGPVVVDFWAEWCGPCRMIAPALDEI
SGAMGDKVKIVKLNVDESPVTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWI
SSAV"
misc_feature complement(225402..225686)
/locus_tag="RPD_0201"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature complement(order(225609..225611,225618..225620))
/locus_tag="RPD_0201"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene complement(225807..229286)
/locus_tag="RPD_0202"
/db_xref="GeneID:4020660"
CDS complement(225807..229286)
/locus_tag="RPD_0202"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_567343.1"
/db_xref="GI:91974684"
/db_xref="InterPro:IPR000212"
/db_xref="GeneID:4020660"
/translation="MSAPRSIPDQARERQILASDPSASVFVSANAGSGKTHVLVQRVI
RLLLDGVPPERILCITFTKAAAANMAERVFTTLGRWVTLDDEALTAAIKATGIKSVGP
SLLAQARKLFACALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELM
QRASLAVLLQAAAAPDSAAGRALTLAMTSAADVTFREVVQEACTRRDRFLAWITQAGG
VDGAMAQLSATLGVAPQDRCEDVERDILDGPNLPRAQWSTAAAMFESGSANDQAQAKR
LRAALALSDVAQLDKYCEVFFTKDGPRKSLATKKIADAAPGFVEDLKREGARLEDLLE
RRRALLMRERTRALLVIAADVAERIRREKQERGLLDYDDLIDKTLAMLDSGASSWVHF
KLDRGVDHVLIDEAQDTSPKQWDIVAHLIAEFTAGEGARDGVRRTVFAVGDEKQSIFS
FQGAVPKEFAERRDLLQRRFHGAGLNFEKVSFNYSFRSGATILQSVDHVFRDPDIYRS
IHADAAYPLHQSLADAGPSVIDLWPLELPDDKQNIEGWRAPFDAVSETSPEVRLAQKV
QAEIASLIAGGTMTGSLGDRRRLRFGDVLVLVRRRGSAFDAVIQALKRGGIPVAGADR
LKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFRLAWRRKGSLRHA
LREKAAGDAKLATALQRLDACAERSQTDTPFGFYAWLLGGVGGRARILRRLGPEANDA
LDEFLELALSYEQKAAPSLQGFMAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEAP
VVFLVDTTSSPSDTQRLNLIRLPGGNAQPGSVGAMVWAGRKSNDPRVVEQARAEMVSE
TEDEYRRLLYVAMTRAADRLIVGGCMPGNRNEVRALSWYDLISKGLENSGLTMRTAPP
DGAVKRYCRPEDEVTEIAPSEQAPAAPPLVMPDWLHKAAPALRRPDNLLRPSDPDDAD
HRRIRRGETEAQRQRALQRGTLVHRLLQSLPDLPADIRANAADRFLLRNADDWSPQER
DALAARVLEVISDDRFAAVFAPGSRAEVPIVGRLQRHGEPVLISGQIDRLVVTDAEVL
IVDYKTNHAPPRSLAETPPAYVRQLALYRAVLSLLYPQRIVRAALLWTEAPEIMEISA
PALDAEQAALTVA"
misc_feature complement(225855..229250)
/locus_tag="RPD_0202"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature complement(<229068..229244)
/locus_tag="RPD_0202"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(226653..>226937)
/locus_tag="RPD_0202"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
misc_feature complement(225882..226370)
/locus_tag="RPD_0202"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene complement(229283..232432)
/locus_tag="RPD_0203"
/db_xref="GeneID:4020661"
CDS complement(229283..232432)
/locus_tag="RPD_0203"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567344.1"
/db_xref="GI:91974685"
/db_xref="GeneID:4020661"
/translation="MRVFSVPPSAPFLRTTIKALVDGELIAGFDARAKPERLAEATLY
LPTRRAGRLARDIFLDVLGADAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPALE
GLPRRLQLAQLIAVWAKGLRSGDPQQSPLVVGGPASTLALADDLARLIDDMATRGVDW
AALDSLVPDAFDRYWRLTLDFLKIAGQWWPQHLRESDQIEPAARRDLLIEAEAARLAA
HRGGPVIAAGSTGSMPATAKLLHAIARLPNGAVILPGLDTELDEQAWRLIGAVRDKQG
QLISPPSPNHPQFAMHGLLTRMGLERREIVRLGEAVRHGREVLASEAMRPSAATASWH
ERLADPEVDRLIEQGVNGLTVIEAPNSEIEALAIAVALREARERGQSAALVTPDRALA
RRVVAALGRWNLPVDDSGGDSLMETQAGIFARLAAEAALHGCEPATLLALLKHPLLRL
GRAAGGWRHAIETLELALLRGTRPAAGSEGLVKEFAKYRAELTRLKRGELSALHPSEP
RARLGDESLDAAQELIEALRAALAPLETVGAEPLDLCAFGRRHRDVLIALSIDHDEIA
VAFEGSQGSALLKAFDDLAAVEPLSGVLVPPHDYADVFETAFSDRIVRRPELAGAALR
IYGPLEARLTQHDRVILGGLVEGVWPPAPRIDPWLSRPMRHDLGLDLPERRIGLSAHD
FAQLLGADEVILTYANKVGGAPAVVSRFLHRLEAVTGKARWSAVKARGQSYLDYAQAL
DRPEQVTPIAQPAPRPPREARPLKLSVTAIEDWLRDPYTIYAKFILGLSAIDPVDMPL
SAADRGSAIHEALGEFTELFPDELPDDPAQVLREIGEKHFAPLMAHPEARALWWPRFA
RIAAWFGNWEQARRADGLRVFAERDGSLSIPLDGGRNFILSARADRIEHRADGSFAIL
DYKTGNPPTGKQVRMGLSPQLTLEAAILRDGGFEGIDAGSSVSELTYVKLSGNSPPGD
ECVLELRIERKDERQSPDDAAAEARSKLETLIRRFDDEAQPYHALVLSMWSRRYGRYD
DLARIKEWSAAGGGAEDRL"
misc_feature complement(229316..232429)
/locus_tag="RPD_0203"
/note="double-strand break repair protein AddB,
alphaproteobacterial type; Region: addB_alphas; TIGR02786"
/db_xref="CDD:163020"
misc_feature complement(229298..230140)
/locus_tag="RPD_0203"
/note="CRISPR/Cas system-associated protein Cas4; Region:
Cas4_I-A_I-B_I-C_I-D_II-B; cl00641"
/db_xref="CDD:207146"
gene complement(232504..233277)
/locus_tag="RPD_0204"
/db_xref="GeneID:4020662"
CDS complement(232504..233277)
/locus_tag="RPD_0204"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_567345.1"
/db_xref="GI:91974686"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4020662"
/translation="MIQCARTNPVRSEQRATMSVQPSRAMILAAGFGVRMRPLTDHKP
KPLVAVAGKPLLDHVLDRLAEAGVAEAVVNVHYLPDQIIDHVAARSRPRVIISDERDA
VLGTGGAVVKALPLLGDQPFYHLNADTLWIDGVQPNLARLAEAFDPARMDILLLMAPT
ANSIGYAGKGDFAMAADGSLRKRKETEVTPFVYAGVAIMQPAIFKDAPQGEFSLTTMF
DRAAEQHRLFGLRLDGVWMHVGTPDAVAAAERAYLASVA"
misc_feature complement(<232519..233214)
/locus_tag="RPD_0204"
/note="Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure...;
Region: GCD1; COG1208"
/db_xref="CDD:31401"
misc_feature complement(232534..233208)
/locus_tag="RPD_0204"
/note="NTP_transferase_like_1 is a member of the
nucleotidyl transferase family; Region:
NTP_transferase_like_1; cd06422"
/db_xref="CDD:133044"
misc_feature complement(order(232894..232896,232900..232902,
233056..233058,233188..233196))
/locus_tag="RPD_0204"
/note="Substrate binding site; other site"
/db_xref="CDD:133044"
misc_feature complement(order(232558..232560,232564..232566,
232894..232896))
/locus_tag="RPD_0204"
/note="metal-binding site"
/db_xref="CDD:133044"
gene complement(233402..233716)
/locus_tag="RPD_0205"
/db_xref="GeneID:4020663"
CDS complement(233402..233716)
/locus_tag="RPD_0205"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567346.1"
/db_xref="GI:91974687"
/db_xref="GeneID:4020663"
/translation="MVAERNKDGRVVFERGIRAQMMAIDGTWRRPCQLEDVSEAGAKL
TVVGAVEGLNLKEFFLLLSSTGLAYRRCELSWVNGDQIGVSFLRNDKKKKPGSRTSAT
AA"
gene complement(233930..235447)
/locus_tag="RPD_0206"
/db_xref="GeneID:4020664"
CDS complement(233930..235447)
/locus_tag="RPD_0206"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567347.1"
/db_xref="GI:91974688"
/db_xref="InterPro:IPR002575"
/db_xref="InterPro:IPR003442"
/db_xref="GeneID:4020664"
/translation="MSGSATFSVALANETATARLMAEIALLIGPGDVVTLSGDLGAGK
TSAARAMIRYLAGDDDLEVPSPTFTLVQSYELPPFPLLHADLYRVNDPSELEEIGLSP
LPDGAVALIEWPERAPGAMPSDRIDIALSHRPALGSMARAAEITGHGAAAARVERLAA
LRSFIEMSGYADADRRHMPGDASTRSYARLVKDGASLILMNAPRRPDGPALYGGKSYS
AAVHLAEDVRPFVAIAGGLRARGFSAPAIHYADLDSGFLITEDLGASGFISGTPPAPI
ADRYQAAADMLAALHGQTLPDTLPLPDEDYAIPVFDPAAMLIEVGLMPEWYLPDRGAP
ASDALRGEFIAMWRGLLGGLTDEAPTWVLRDFHSPNLIWLEQRSEIARVGVIDFQDTV
LGPAAYDLVSLLQDARVDVPEALELALFGRYIKTRRAAEPGFDPVAFARLYAVMSAQR
NTRLLGTFARLNRRDGKPQYLRHQPRIWTYLGRSLAHQSLAEVRAWYQANVPAPL"
misc_feature complement(235052..235417)
/locus_tag="RPD_0206"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
misc_feature complement(233942..234958)
/locus_tag="RPD_0206"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(234167..234913)
/locus_tag="RPD_0206"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
gene complement(235444..237957)
/locus_tag="RPD_0207"
/db_xref="GeneID:4020665"
CDS complement(235444..237957)
/locus_tag="RPD_0207"
/codon_start=1
/transl_table=11
/product="PAS/PAC sensor signal transduction histidine
kinase"
/protein_id="YP_567348.1"
/db_xref="GI:91974689"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020665"
/translation="MSDVLGSMRRTCLSCTSLVRGLAGAGLLAASSPAWAADDPLATL
TSRFMFDFNRHELVTLAMAASVLGFSVVSAILLMRTRQRAAAQEAQLRADVQTLQAES
DRFRALLFAEPQVLISWSAGDDRPQISGDTALLLPQEVANAQPQRVLAFGTWLPPEPA
LQMDHAVDALLDKGEAFLLHLTTSTGRSIEAMGRAIGGQAILRIRELSGIRRELADMS
RRFKSLQDESEMLRGFANAAPWPIWTRRASGELSFANAAYARATDAGSAADAVNRNLE
LLDSNDRGNLARALNDNAQFAARLPIVVSGERRYFDVRALRLSGGSAGIAVDASEAAA
LGAALVRMAEAHRRTLDQLSSGVAVFDAQRRLAFYNDSYRRLWDLDRAFLDSNPDDSS
VIDRLRAARKLPEERDFREWKKKLHEAYRAVEPEKAIWYLPDGRAISIVTTPNQEGGV
TYLFDDVTESLELQRRYGGLIDVQRETLDNLTEAVAVFGSNGCAQLFNPAFTRMWNLS
PEALNNRPHIETVEEWCRPLFDDAVSWQALRSAITGIDDRKHVLLKLERKDGTVLSCK
TMPLPDGATMLTFLDISDTENVERALRERNEALETADRIKVDFVHHVSYELRSPLTTI
IGFAHLLGDPSTGPLNDKQSEYIAYITSSTNALMAIINNILDLASIDAGAMTLNLGPI
DIGRAIDAAAEGIQDRLARDQITLDVEIDPAVGEFVGDERRVVQVLYNLLANAVGFSP
NQATVTLVVHKIGAKVVFTVTDAGPGIAPELKDKVFDWFESHSQGSRHRGPGLGLALV
RSFVELHGGKVQVDSVVGRGTSVICEFPIEPSAQRNAAE"
misc_feature complement(236563..236910)
/locus_tag="RPD_0207"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature complement(235483..236535)
/locus_tag="RPD_0207"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(235954..236151)
/locus_tag="RPD_0207"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(235966..235968,235978..235980,
235987..235989,235999..236001,236008..236010,
236020..236022,236077..236079,236086..236088,
236098..236100,236107..236109,236119..236121,
236131..236133))
/locus_tag="RPD_0207"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(236113..236115)
/locus_tag="RPD_0207"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(235483..235782)
/locus_tag="RPD_0207"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(235495..235497,235501..235506,
235519..235521,235525..235527,235573..235584,
235657..235662,235666..235668,235672..235674,
235678..235680,235747..235749,235756..235758,
235768..235770))
/locus_tag="RPD_0207"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(235756..235758)
/locus_tag="RPD_0207"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(235576..235578,235582..235584,
235660..235662,235666..235668))
/locus_tag="RPD_0207"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(238137..238595)
/gene="dut"
/locus_tag="RPD_0208"
/db_xref="GeneID:4020666"
CDS complement(238137..238595)
/gene="dut"
/locus_tag="RPD_0208"
/EC_number="3.6.1.23"
/note="catalyzes the formation of dUMP from dUTP"
/codon_start=1
/transl_table=11
/product="deoxyuridine 5'-triphosphate
nucleotidohydrolase"
/protein_id="YP_567349.1"
/db_xref="GI:91974690"
/db_xref="InterPro:IPR003232"
/db_xref="InterPro:IPR008180"
/db_xref="InterPro:IPR008181"
/db_xref="GeneID:4020666"
/translation="MSDTIAVEIKQLPHAEGLPLPAYQSAHAAGLDLCAANSADAPLL
LAPGSYVLVPTGLTIALPENYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLL
INHGDAPFTIRRGERIAQMVIAPVVRAELIGVETLSETARGVGGFGSTGR"
misc_feature complement(238227..238511)
/gene="dut"
/locus_tag="RPD_0208"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature complement(order(238236..238238,238248..238250,
238257..238271,238281..238283,238287..238289,
238293..238295,238299..238301,238320..238322,
238329..238331,238347..238355,238371..238388,
238392..238394,238440..238442,238446..238451,
238464..238466,238506..238511))
/gene="dut"
/locus_tag="RPD_0208"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature complement(order(238299..238304,238314..238316,
238323..238331,238374..238382))
/gene="dut"
/locus_tag="RPD_0208"
/note="active site"
/db_xref="CDD:143638"
gene complement(238592..240049)
/locus_tag="RPD_0209"
/db_xref="GeneID:4020667"
CDS complement(238592..240049)
/locus_tag="RPD_0209"
/EC_number="4.1.1.36"
/EC_number="6.3.2.5"
/note="catalyzes the conjugation of cysteine to
4'-phosphopantothenate to form
4-phosphopantothenoylcysteine, which is then
decarboxylated to form 4'-phosphopantotheine; in the
alphaproteobacteria, this protein contains an N-terminal
SbtC-like domain"
/codon_start=1
/transl_table=11
/product="bifunctional
SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="YP_567350.2"
/db_xref="GI:228924659"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR005252"
/db_xref="InterPro:IPR007085"
/db_xref="GeneID:4020667"
/translation="MANLTIRKLDDALKAELRQRAAANGRSMEDEVRVILRDVCHKRH
GFAASFPQPGEDPAAPGKIEPSPGKDEGFPSEPAASVRITLIVGGGIAAYKAMDLIRR
LKERGAEVRVVLTRAAQQFVTPLTASALSHQRCYTDLFDPQSEFDAGHIRLARDCDLI
VVAPATADLMAKIAGGHADDLATAILLATNRQILLAPAMNPLMWNNAATRRNVDQLKR
DGVALVGPNAGEMAERGEAGTGRMAEPIEIAAAAQAFWTPQPQRPLRGRRVLITAGPT
HEAIDPVRYIANRSSGKQGYAIAAAAAAAGAEVVLISGPVDLRAPDGVTLTRVESARE
MLDAVQAALPTDIAIFAAAVADWRVESEGGQKIKKGAGGPPPLQLTENPDILATISKR
GENRPNLVIGFAAETENLLDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLMN
TTDAVDVESWPLMTKDEVASALVARIAQTMEVHAP"
misc_feature complement(238595..240049)
/locus_tag="RPD_0209"
/note="bifunctional SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Provisional;
Region: PRK13982"
/db_xref="CDD:172484"
misc_feature complement(<239939..240049)
/locus_tag="RPD_0209"
/note="Plasmid stability protein [General function
prediction only]; Region: StbC; COG4691"
/db_xref="CDD:34307"
misc_feature complement(239423..239806)
/locus_tag="RPD_0209"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature complement(238706..239260)
/locus_tag="RPD_0209"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene complement(240150..241724)
/locus_tag="RPD_0210"
/db_xref="GeneID:4020668"
CDS complement(240150..241724)
/locus_tag="RPD_0210"
/codon_start=1
/transl_table=11
/product="2-polyprenylphenol 6-hydroxylase"
/protein_id="YP_567351.1"
/db_xref="GI:91974692"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR004147"
/db_xref="InterPro:IPR010232"
/db_xref="GeneID:4020668"
/translation="MIAGLSHAARLVRAAYVFAREGVFGVVDPSLIPPAGQLPVRLAR
LIERPGAKSGARLSRALTRLGPAYLKLGQFLATRPDVVGAAMARDLEALQDRLPPFAQ
EEAEAVIAASLERPVAQAFVSLSPPVAAASIAQVHRGEVEIGGVRKQVAVKVLRPNVA
SRFRRDLSDFFFVADKAEQYSSEARRLRLVEVINTMSRSVAMEMDLRLEAAAASEMAE
NTKDDPDFRVPTVDWDRTTHNVLTMEWIDGIPLNDHKRLAEANVDTVELGRKVIQSFL
RHALRDGFFHADMHPGNLFLDPEGRLVAVDFGIMGRLLPKERRFLAEILLGFITRNYR
RVAEVHFEAGYVPAHHSVENFAQAIRAIGEPIHNRLAEEISMAKLLTLLLEVTGLFDM
RTRPELILLQKTMVVVEGVARSFDPRLDIWKVADPVVREWIQRNLGPIGKVEGALTGA
GELGHTLSSLPTIVSRAVTVLNQLEVMTKDGLVLAPETIAAIGRTERGRTRGRTAALW
IIAVTFIGVLIAMSRL"
misc_feature complement(240318..241712)
/locus_tag="RPD_0210"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
misc_feature complement(240396..241697)
/locus_tag="RPD_0210"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(order(240807..240812,240840..240842,
240846..240848,240975..240977,240987..240998,
241038..241040))
/locus_tag="RPD_0210"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88273"
gene complement(241721..242482)
/gene="ubiE"
/locus_tag="RPD_0211"
/db_xref="GeneID:4020669"
CDS complement(241721..242482)
/gene="ubiE"
/locus_tag="RPD_0211"
/note="Catalyzes the carbon methylation reaction in the
biosynthesis of ubiquinone"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis
methyltransferase"
/protein_id="YP_567352.1"
/db_xref="GI:91974693"
/db_xref="InterPro:IPR000051"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR004034"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4020669"
/translation="MNQPGETTHFGFRDVPLNDKQTMVNDVFHSVASRYDLMNDLMSG
GMHRLWKDVMITTLNPPRDDAPFRLLDVAGGTGDISFRAAKASGAGFQATVCDINTDM
LEVGRQRAVQRHLDGQVDFVEGNAEALQFPDRSYDAYTIAFGIRNVPRIDLALKEAYR
VLKPGSRFLCLEFSSVDVPGLNKIYDLFSFKVIPEIGRVVTGDAESYQYLVESIRKFP
KPYDFAEMMRDAGFARVNWQMMSGGIVALHSGWRL"
misc_feature complement(241724..242449)
/gene="ubiE"
/locus_tag="RPD_0211"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:32408"
misc_feature complement(241973..242281)
/gene="ubiE"
/locus_tag="RPD_0211"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(242060..242062,242105..242113,
242189..242194,242249..242269))
/gene="ubiE"
/locus_tag="RPD_0211"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 242693..243574
/locus_tag="RPD_0212"
/db_xref="GeneID:4020670"
CDS 242693..243574
/locus_tag="RPD_0212"
/EC_number="3.2.2.23"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="YP_567353.1"
/db_xref="GI:91974694"
/db_xref="InterPro:IPR000191"
/db_xref="InterPro:IPR000214"
/db_xref="InterPro:IPR012319"
/db_xref="GeneID:4020670"
/translation="MPELPEVETVRLGLTPAMEGFRIARAVTNRDDLRFPLQKDFVAR
LTGQIVTGLGRRAKYLLADLASGDVLLMHLGMSGSFRVVAADGAHTPGEFHHPRSEDR
THDHVVFDMSSGARVIFNDPRRFGFMKIFPRAAIDDEPHLKGLGPEPLGNAFDAVMLA
RACAGKQTSLKAALLDQRVVAGLGNIYVCEALWRAHLSPKRKAATLANRKNEPTDHAL
RLTDAIRAVLGDAIKAGGSSLRDHRQTSGELGYFQHSFAAYDREGERCRTDGCGGAVK
RFVQNGRSTFWCSGCQK"
misc_feature 242693..243571
/locus_tag="RPD_0212"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 242696..243088
/locus_tag="RPD_0212"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(242696..242701,242864..242866,242909..242911,
242915..242923,242999..243004,243056..243067)
/locus_tag="RPD_0212"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 242696..242698
/locus_tag="RPD_0212"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(242699..242710,242714..242719,242726..242728,
242855..242866,242921..242923)
/locus_tag="RPD_0212"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(242699..242701,242864..242866)
/locus_tag="RPD_0212"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 242909..242911
/locus_tag="RPD_0212"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(242918..242920,243059..243061,243065..243067)
/locus_tag="RPD_0212"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 242921..242923
/locus_tag="RPD_0212"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(243002..243004,243062..243064)
/locus_tag="RPD_0212"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 243125..243415
/locus_tag="RPD_0212"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 243479..243571
/locus_tag="RPD_0212"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene complement(243743..244705)
/locus_tag="RPD_0213"
/db_xref="GeneID:4020671"
CDS complement(243743..244705)
/locus_tag="RPD_0213"
/codon_start=1
/transl_table=11
/product="transposase, IS4"
/protein_id="YP_567354.1"
/db_xref="GI:91974695"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4020671"
/translation="MAQDSFIEALLPAGFGRNERLERISGLIDWDRLAVLIRKVRPGE
TGRPPYAPLAMFKALLLQQWYGLSDPGLEEALLDRVSFRRFCGFALDAQTPDETTLCR
FRNALQQAGLGDALFQEVLRQLEAAGYVLKTGTLIDATLVQSSGRTPPSGSTPREVES
RSSHDPQADWTRHGAGRRLFFGYKAHIAIDQGSGLIRARKLTGAKTYESEVADDLVLG
DEKAVYADKAYEKRARRQALKARGIKDRIQHRRNKHQKALPRWQAVRNKLIGRVRQAI
ERTFAQLKGRYGFTRMRYAGITANAFHLDLISIAYNLRTAAAIR"
misc_feature complement(244343..244570)
/locus_tag="RPD_0213"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
misc_feature complement(243767..244210)
/locus_tag="RPD_0213"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature complement(243851..>244168)
/locus_tag="RPD_0213"
/note="DDE superfamily endonuclease; Region: DDE_4;
cl15789"
/db_xref="CDD:211471"
gene complement(245415..246779)
/locus_tag="RPD_0214"
/db_xref="GeneID:4020672"
CDS complement(245415..246779)
/locus_tag="RPD_0214"
/codon_start=1
/transl_table=11
/product="peptidoglycan binding domain-containing protein"
/protein_id="YP_567355.1"
/db_xref="GI:91974696"
/db_xref="InterPro:IPR002477"
/db_xref="GeneID:4020672"
/translation="MRSMLAATLMIVSATGLAAAQTPSGTVQGVKPKPVATTPIRPAL
QTPAETAKSMAQGEREAIQSDLAWTGDYNGVINGEASDRMVAAIKAFQNNHGAKPTGV
LNPQERAQLAEAARKLQGNVGWKLISDPVTGARLGVPGKLVPQQTSDANGSKWASSTG
TIQIVLARRKEAGASIAKLADQEKKEPGRKVTYSAVRPDFFVLSGTQGLKKFYTRGAF
KDAEIRILTVLYDQATEGTMEPVVIAMSSAFNPFPSGAPAGPPPRKKVEYATGVIVSD
DGAILTDRDAVDGCQTIVVVGHGNADLAATDKEHDLALLRIYGARGLKPLALGSGAAK
ASVDLTGIADPQSQGGGAAVSVSKASVTPTGSAGGLALSPAPGLGFSGAPARDADRKF
AGIALLRPPVMAGAVNGAAAPQATLVDADIVRKFLATNKIQPATDAAADARASVVRVI
CVRK"
misc_feature complement(246447..246608)
/locus_tag="RPD_0214"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
misc_feature complement(245595..245975)
/locus_tag="RPD_0214"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
gene 246901..247701
/locus_tag="RPD_0215"
/db_xref="GeneID:4020673"
CDS 246901..247701
/locus_tag="RPD_0215"
/codon_start=1
/transl_table=11
/product="UBA/THIF-type NAD/FAD binding domain-containing
protein"
/protein_id="YP_567356.1"
/db_xref="GI:91974697"
/db_xref="InterPro:IPR000205"
/db_xref="InterPro:IPR000594"
/db_xref="InterPro:IPR007901"
/db_xref="GeneID:4020673"
/translation="MLSADELERYARHIVLREVGGPGQAALRRARVLVVGAGGLGAPV
LMYLAAAGIGTLDIVDNDEVSLSNLQRQVIHATPDIGKRKVDSAAARIKALNPHVEVR
PHALRLTPANALDLIDGCDLVLDGSDNFATRYLVSDACFIARTPLITAALGPFDGSLT
TIRAHEKNPAGEFNPTYRCLFPEAPPPGTVPACEEAGVMGALAGMLGSMMALEAIREI
VGFGEGLVGRLLMIDARAMRFETLRYSRDPANPLNGDAPRVTDLSGHP"
misc_feature 246901..247647
/locus_tag="RPD_0215"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature 246925..247629
/locus_tag="RPD_0215"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature order(247006..247008,247012..247014,247018..247020,
247078..247080,247084..247086,247111..247113,
247150..247152,247276..247278,247294..247296)
/locus_tag="RPD_0215"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature order(247018..247020,247279..247287,247297..247299,
247351..247356,247366..247368,247372..247374,
247585..247587,247597..247599,247618..247620,
247624..247629)
/locus_tag="RPD_0215"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene complement(247862..248824)
/locus_tag="RPD_0216"
/db_xref="GeneID:4020674"
CDS complement(247862..248824)
/locus_tag="RPD_0216"
/codon_start=1
/transl_table=11
/product="transposase, IS4"
/protein_id="YP_567357.1"
/db_xref="GI:91974698"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4020674"
/translation="MAQDSFIEALLPAGFGRNERLERISGLIDWDRLAVLIRKVRPGE
TGRPPYAPLAMFKALLLQQWYGLSDPGLEEALLDRVSFRRFCGFALDAQTPDETTLCR
FRNALQQAGLGDALFQEVLRQLEAAGYVLKTGTLIDATLVQSSGRTPPSGSTPREVES
RSSHDPQADWTRHGAGRRLFFGYKAHIAIDQGSGLIRARKLTGAKTYESEVADDLVLG
DEKAVYADKAYEKRARRQALKARGIKDRIQHRRNKHQKALPRWQAVRNKLIGRVRQAI
ERTFAQLKGRYGFTRMRYAGITANAFHLDLISIAYNLRTAAAIR"
misc_feature complement(248462..248689)
/locus_tag="RPD_0216"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
misc_feature complement(247886..248329)
/locus_tag="RPD_0216"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature complement(247970..>248287)
/locus_tag="RPD_0216"
/note="DDE superfamily endonuclease; Region: DDE_4;
cl15789"
/db_xref="CDD:211471"
gene complement(249040..250041)
/locus_tag="RPD_0217"
/db_xref="GeneID:4020675"
CDS complement(249040..250041)
/locus_tag="RPD_0217"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenase"
/protein_id="YP_567358.1"
/db_xref="GI:91974699"
/db_xref="InterPro:IPR000683"
/db_xref="InterPro:IPR006139"
/db_xref="InterPro:IPR006140"
/db_xref="GeneID:4020675"
/translation="MSVKKKPLVVVTRKLPDSIETRMRELFDARLNLDDVPMSADQLA
EAARTADVLVPTVTDTITSAMLNQPDCTLRLIAHFGNGIDNLDVAAAHARGITVTNTP
KVLTEDTADMTMALILAVPRRLIEGAALLTDGGEWPGWSPTWMLGRRLGGKRLGIIGM
GRIGQAVARRARAFGLQIHYHNRKPVAPRIADELGATYWDSLDQMLARMDIISVNCPH
TPATFHLLSARRLKLIRKDAFIVNTARGEVIDEETLTRLIETGDIAGAGLDVYEHEPV
VNPKLVRLAKAGKVVLLPHMGSATIEGRVEMGEKVIINIRTFLDNHKPPDRVLPAML"
misc_feature complement(249052..250029)
/locus_tag="RPD_0217"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature complement(249151..249702)
/locus_tag="RPD_0217"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 250275..250799
/locus_tag="RPD_0218"
/db_xref="GeneID:4020676"
CDS 250275..250799
/locus_tag="RPD_0218"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567359.1"
/db_xref="GI:91974700"
/db_xref="InterPro:IPR010466"
/db_xref="GeneID:4020676"
/translation="MKLKRPIAAVLFAGAITGAAAPALAAKDSPLSASGLPVPRYVSL
KSDHVNVRIGPTKDNDVAWVYTRAGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGR
RTAVITMKDKDELATLYEAASTGSAVAARLQAGVVAQIKRCDPNWCRIIGSGFDGWIE
KQRLWGVYADEQVK"
misc_feature 250407..250577
/locus_tag="RPD_0218"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
misc_feature 250608..250772
/locus_tag="RPD_0218"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
gene complement(251081..251569)
/locus_tag="RPD_0219"
/db_xref="GeneID:4020677"
CDS complement(251081..251569)
/locus_tag="RPD_0219"
/codon_start=1
/transl_table=11
/product="ferric-uptake regulator"
/protein_id="YP_567360.1"
/db_xref="GI:91974701"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:4020677"
/translation="MDIGDRATYSREESVTLAHAVEPHLNGCPWHDVNEMLQSVGLRP
TRQRMALGWLLFSKGDRHLTAEMLYEEASQAKVPVSLATVYNTLNQLTDVGLLRQVSV
DGTKTYFDTNVTAHQHFYLENNHELIDIPDQHVALRSTPQVPDGYEIARVDVVVRLRK
KS"
misc_feature complement(251099..251434)
/locus_tag="RPD_0219"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(251183..251185,251216..251218,
251222..251224,251240..251242,251384..251386))
/locus_tag="RPD_0219"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(251288..251332)
/locus_tag="RPD_0219"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(251114..251116,251219..251221))
/locus_tag="RPD_0219"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(251099..251119,251123..251131,
251156..251161,251204..251212))
/locus_tag="RPD_0219"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(251198..251200,251207..251209))
/locus_tag="RPD_0219"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 251784..252347
/locus_tag="RPD_0220"
/db_xref="GeneID:4020678"
CDS 251784..252347
/locus_tag="RPD_0220"
/EC_number="4.2.1.60"
/note="catalyzes the dehydration of
(3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or
3,4-decenoyl-ACP"
/codon_start=1
/transl_table=11
/product="3-hydroxydecanoyl-(acyl carrier protein)
dehydratase"
/protein_id="YP_567361.1"
/db_xref="GI:91974702"
/db_xref="InterPro:IPR010083"
/db_xref="InterPro:IPR013114"
/db_xref="GeneID:4020678"
/translation="MAEFRELKRQSRMRDRRSSYEYEDLLACGRGELFGPGNAQLPLP
PMLMFDRITEISETGGAHGKGLIRAELDVNPDLWFFACHFKGDPVMPGCLGLDALWQM
LGFFLGWSGGEGPGRALGSGELKFTGQVLPHVRKVVYNVDIKRVMRSKLWLGIADGWL
SADDEIIYRAQDLKVGLFKQTAAKPAA"
misc_feature 251898..252323
/locus_tag="RPD_0220"
/note="FabA, beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase: Bacterial protein of the type II, fatty
acid synthase system that binds ACP and catalyzes both
dehydration and isomerization reactions, apparently in the
same active site. The FabA...; Region: FabA; cd01287"
/db_xref="CDD:48032"
misc_feature order(251898..251906,252072..252074,252081..252086,
252093..252098,252129..252140)
/locus_tag="RPD_0220"
/note="active site 1 [active]"
/db_xref="CDD:48032"
misc_feature order(251901..251903,251907..251909,252060..252062,
252072..252074,252129..252155,252159..252161,
252165..252170)
/locus_tag="RPD_0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48032"
misc_feature order(252051..252059,252159..252170)
/locus_tag="RPD_0220"
/note="active site 2 [active]"
/db_xref="CDD:48032"
gene 252427..253653
/locus_tag="RPD_0221"
/db_xref="GeneID:4020679"
CDS 252427..253653
/locus_tag="RPD_0221"
/EC_number="2.3.1.41"
/note="FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes
a condensation reaction in fatty acid biosynthesis:
addition of an acyl acceptor of two carbons from
malonyl-ACP; required for the elongation of short-chain
unsaturated acyl-ACP"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-(acyl carrier protein) synthase I"
/protein_id="YP_567362.1"
/db_xref="GI:91974703"
/db_xref="InterPro:IPR000794"
/db_xref="GeneID:4020679"
/translation="MRRVVVTGMGIVSSIGNNTQEVLASLHDAKSGISRAEKHAELGF
RSQVQGLPSLNPADVVDRRAMRFLGEGAAWNHVAMEQALADSGLEESDISNPRTGIVM
GSGGPSARTIVEAADITRTKGPKRVGPFAVPKAMSSTASATLATWFKIKGVNYSISSA
CATSNHCIGNAYELIQWGKQDVVFAGGCEELDWSLSVLFDAMGAMSSKYNDTPATASR
PYDVSRDGFVIAGGAGVLVLEELEHAKARGAKIYGEIIGYGATSDGYDMVAPSGEGAE
RCMKMALSTTGGIKIDYINPHATSTPAGDPPEINALRNVFGAGDKCPPISATKALTGH
SLGATGVQEAIYSLLMMQNGFICESANITELDPAFADMPIVRKRIDNAKIGAVLSNSF
GFGGTNATLVFKRLDA"
misc_feature 252427..253650
/locus_tag="RPD_0221"
/note="3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed; Region: PRK07967"
/db_xref="CDD:181184"
misc_feature 252430..253635
/locus_tag="RPD_0221"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:29421"
misc_feature order(252739..252741,252760..252765,252775..252777,
252781..252786,252820..252822,252838..252840,
252850..252852,252862..252864,252880..252882,
252886..252888,252892..252900,252934..252936,
252943..252948,252955..252957,253018..253020,
253027..253032,253207..253221,253255..253257,
253609..253611,253615..253617)
/locus_tag="RPD_0221"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29421"
misc_feature order(252907..252909,253315..253317,253426..253428)
/locus_tag="RPD_0221"
/note="active site"
/db_xref="CDD:29421"
gene 253850..254695
/locus_tag="RPD_0222"
/db_xref="GeneID:4020680"
CDS 253850..254695
/locus_tag="RPD_0222"
/EC_number="1.3.1.10"
/note="Catalyzes a key regulatory step in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="enoyl-(acyl carrier protein) reductase"
/protein_id="YP_567363.1"
/db_xref="GI:91974704"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4020680"
/translation="MQALMQGKRGLIMGVANNHSLAWGIAKTLSAHGAELAFTYQGDA
LGKRVKPLAQSLNAELVLPCDVEDLDSVDAVFATLKEKWGGLDFVVHAIGFSDKNELK
GRYADTTRENFSRTMVISCFSFTEIAKRAAELMPPTGGSMITLTYGGSTRVMPNYNVM
GVAKAALEASTRYLASDYGPRNIRVNAISAGPVRTLAGAGIADARIMFNYQLRHAPLR
RTVSIEDVGGSALYLLSDLSNGVTGEVHFVDSGYNIISMPEPDALKTVDEAETAAEQR
AAKEK"
misc_feature 253850..254665
/locus_tag="RPD_0222"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK06505"
/db_xref="CDD:180596"
misc_feature 253868..254614
/locus_tag="RPD_0222"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(253889..253897,253907..253912,253970..253972,
254039..254047,254123..254134,254204..254206,
254282..254290,254318..254320,254339..254341,
254417..254428,254432..254443)
/locus_tag="RPD_0222"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(253940..253942,254045..254056,254063..254065,
254159..254179,254186..254191,254198..254203,
254210..254215,254222..254224,254234..254236,
254243..254245,254294..254299,254303..254314,
254318..254323,254330..254335,254342..254347,
254354..254359,254363..254380,254384..254389,
254468..254470,254477..254479,254495..254506,
254522..254524,254531..254536,254543..254545,
254558..254560,254564..254602,254606..254614)
/locus_tag="RPD_0222"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(254045..254056,254159..254179,254186..254191,
254198..254203,254210..254215,254222..254224,
254231..254236,254243..254245,254294..254299,
254303..254311,254318..254323,254330..254335,
254342..254347,254354..254359,254363..254371,
254375..254383)
/locus_tag="RPD_0222"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(254129..254131,254135..254137,254288..254290,
254318..254320,254327..254329,254339..254341,
254438..254443,254450..254452,254459..254461)
/locus_tag="RPD_0222"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(254207..254209,254288..254290,254327..254329,
254339..254341)
/locus_tag="RPD_0222"
/note="active site"
/db_xref="CDD:187630"
gene complement(255039..257237)
/locus_tag="RPD_0223"
/db_xref="GeneID:4020681"
CDS complement(255039..257237)
/locus_tag="RPD_0223"
/EC_number="1.11.1.6"
/codon_start=1
/transl_table=11
/product="catalase/peroxidase HPI"
/protein_id="YP_567364.1"
/db_xref="GI:91974705"
/db_xref="InterPro:IPR000763"
/db_xref="InterPro:IPR002016"
/db_xref="GeneID:4020681"
/translation="MDAKTDDQGGKCPFPHGGGSRGHRNRDWWPEQLDINMLHRNSTL
SDPLGKAFDYAKEFESLDLDAVIKDLHALMTDSQDWWPADFGHYGGLMIRMAWHSAGT
YRTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLYVLTGN
VALESMGFKTFGFAGGRADTWEPEELFWGPEGSWLGDERYSGERQLHDALGAVQMGLI
YVNPEGPNGNPDPVAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDPSLIGA
EPEGGALEDQGLGWKSKFGTGFGADAITGGPEVIWTQTPTQWSNFFFENLFGFEWELD
KSPAGAKQWKAKGAEATVPDPFDPTKKRVPTMLTTDLSLRFDPAYEKISRRFFENPDQ
FADAFARAWFKLTHRDMGPKVRYRGKLVPKEDLIWQDPIPPVDHELVSAKDIADLKAR
ILASGLSVSQLVSTAFASASTYRHSDKRGGANGARIRFAPQKDWEVNQPADLAQVLGK
LEAIQKAFNDAQSGGKKVSLADLIVLGGSAAVEKAAKDAGTEVEVPFTPGRMDALEEQ
TDGDSFKVLEPRADGFRNFIGKRHQFMQPEEALVDRAQLLNLTAPEMTVLLGGLRVLG
GNVGHDSHGVFTDRPEKLTNDFFVNLLDMKTAWSLSATAEGVYEGRDRKTGDLRWTGT
RVDLIFGSHSQLRALAEVYGQSDAQTKFAQDFVAAWTKVMNADRFDLAAK"
misc_feature complement(255048..257210)
/locus_tag="RPD_0223"
/note="catalase/hydroperoxidase HPI(I); Provisional;
Region: PRK15061"
/db_xref="CDD:185021"
misc_feature complement(255963..257180)
/locus_tag="RPD_0223"
/note="N-terminal catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_1;
cd00649"
/db_xref="CDD:173824"
misc_feature complement(order(256374..256382,256386..256391,
256401..256403,256407..256409,256656..256664,
256677..256682,256683..256685,256689..256697,
256785..256787,256797..256802,256809..256811,
256821..256823,256830..256832,256866..256871,
256875..256886,256998..257000,257121..257123,
257136..257138,257142..257144,257151..257159,
257163..257180))
/locus_tag="RPD_0223"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(order(256035..256037,256047..256049,
256131..256133,256137..256139,256305..256307,
256323..256328,256440..256454,256458..256463,
256470..256475,256512..256514,256572..256574,
256578..256580,256947..256949,256956..256961,
256965..256970))
/locus_tag="RPD_0223"
/note="active site"
/db_xref="CDD:173824"
misc_feature complement(order(256035..256037,256047..256049,
256131..256133,256137..256139,256305..256307,
256323..256328,256440..256454,256458..256463,
256470..256475,256512..256514,256572..256574,
256578..256580,256947..256949,256956..256961,
256965..256970))
/locus_tag="RPD_0223"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(255060..255953)
/locus_tag="RPD_0223"
/note="C-terminal non-catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_2;
cd08200"
/db_xref="CDD:173828"
gene 257482..258420
/locus_tag="RPD_0224"
/db_xref="GeneID:4020682"
CDS 257482..258420
/locus_tag="RPD_0224"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_567365.1"
/db_xref="GI:91974706"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:4020682"
/translation="MVTLRQLRYLSALARHGHFGRAAESCAVTQPALSMQIAELERTL
GVKVVERRPGEVFLTEIGREIARRGDDLLTASRDLVDFARHRAQPLTGRLTLGVIPSL
APYLLPKVLPLLQRRFPELRLELRESQTRQLVTDIGSGALDAALLALPAGNRDLDAIA
LFDDVFLLAVPADDPRPESATVTVDEIDQSRLILLEDGHCLRDQALAFCATGRNRAIN
LGGAGTATFGASSLTTVIQMVAAGYGVTLIPQIAAEIERRDARVKFLQLRRPQPGRSI
GLAFRKTSPRRSDFEALGDVVTEGVSGKAAREEASA"
misc_feature 257491..258417
/locus_tag="RPD_0224"
/note="DNA-binding transcriptional regulator OxyR;
Provisional; Region: PRK11151"
/db_xref="CDD:182999"
misc_feature 257491..257670
/locus_tag="RPD_0224"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 257755..258372
/locus_tag="RPD_0224"
/note="The C-terminal substrate-binding domain of the
LysR-type transcriptional regulator OxyR, a member of the
type 2 periplasmic binding fold protein superfamily;
Region: PBP2_OxyR; cd08411"
/db_xref="CDD:176103"
misc_feature order(257791..257793,257800..257805,257812..257814,
257824..257826,257848..257862,258160..258162,
258169..258174,258181..258183,258190..258195,
258199..258204)
/locus_tag="RPD_0224"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176103"
gene complement(258512..260194)
/locus_tag="RPD_0225"
/db_xref="GeneID:4020683"
CDS complement(258512..260194)
/locus_tag="RPD_0225"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_567366.1"
/db_xref="GI:91974707"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:4020683"
/translation="MLSFLRSAAHDHAMAMLDAINRSQAVIEFDLEGNIRCANDNFLA
TTGYSLDEIKGKHHRIFVDPAERDSAAYRDFWASLRSGKQQSGEFERVAKGGRPLWLQ
ASYSPIVDKSGKPGGFVKFAADVTAAKNRSMEDAGKILAISRAQAVIEFDLDGHIITA
NDRFLKAMGYELTDIQGKHHSIFVDPSERASSEYCNFWARLGRGEYVSGEFKRFGKGQ
TEIWILATYNPILDVKGKPLKVVKFASDITQQKLSAADTAGQIAAIGKSQAVIEFDTQ
GIILDANDNFLAAVGFTLPEIKGRHHRIFVDPAERDGVAYQDFWAALARGQYQSAEYK
RIGKGGKEIWIQASYNPIIGLDGKPYKIVKYATDITRQVLTRIGNERVRGMMESVAAG
AEELNASVREISEAMTKSRQTTLDAVNEVDSVDGQANRLNEAAQAMSGIVELISNITG
QINLLALNATIESARAGEAGRGFAVVAGEVKNLANQAKQATDRIGAEIENLNGISGDV
VGALGKIKAAIQNVSEYVTSTAAAVEEQSTVTGEMSSGMQRAATEAAAIAAA"
misc_feature complement(259820..260128)
/locus_tag="RPD_0225"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(259814..260119)
/locus_tag="RPD_0225"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(259907..259909,259922..259924,
260003..260014,260051..260053,260069..260071,
260081..260083))
/locus_tag="RPD_0225"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(259880..259882,259886..259888,
259970..259975,259982..259984,260009..260011,
260021..260023))
/locus_tag="RPD_0225"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(259454..259756)
/locus_tag="RPD_0225"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(259448..259753)
/locus_tag="RPD_0225"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(259541..259543,259556..259558,
259637..259648,259685..259687,259703..259705,
259715..259717))
/locus_tag="RPD_0225"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(259514..259516,259520..259522,
259604..259609,259616..259618,259643..259645,
259655..259657))
/locus_tag="RPD_0225"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(259088..259396)
/locus_tag="RPD_0225"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(259085..259387)
/locus_tag="RPD_0225"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(259175..259177,259190..259192,
259271..259282,259319..259321,259337..259339,
259349..259351))
/locus_tag="RPD_0225"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(259148..259150,259154..259156,
259238..259243,259253..259255,259277..259279,
259289..259291))
/locus_tag="RPD_0225"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(258548..259039)
/locus_tag="RPD_0225"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(258551..259039)
/locus_tag="RPD_0225"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(258554..258559,258566..258568,
258575..258580,258587..258589,258596..258601,
258608..258613,258617..258622,258629..258631,
258638..258643,258650..258652,258659..258664,
258701..258706,258713..258718,258722..258727,
258734..258739,258746..258748,258755..258760,
258767..258769,258776..258778,258788..258790,
258809..258811,258818..258820,258830..258832,
258839..258844,258851..258853,258860..258862,
258869..258874,258881..258886,258893..258895,
258902..258907,258911..258913,258923..258928,
258932..258937,258944..258946,258953..258958,
258965..258970,258977..258979,258986..258991,
258998..259000,259007..259012,259016..259021,
259028..259030,259037..259039))
/locus_tag="RPD_0225"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(258743..258844)
/locus_tag="RPD_0225"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(260510..262195)
/locus_tag="RPD_0226"
/db_xref="GeneID:4020684"
CDS complement(260510..262195)
/locus_tag="RPD_0226"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_567367.1"
/db_xref="GI:91974708"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:4020684"
/translation="MFSFFRRAGSSPSSTAIMEAMNRSQAMIEFNLDGTVLGANEKFL
EALGYSLAEIKGKHHRMFVDPEETRTDAYRRFWADLQAGTYQAGEFKRIAKGAREIWI
QASYNPVLGNDGKPLCVVKYATDITAAKRRSMEDFGKMQAIGRSQAVIEFAMDGTILT
ANKNFLQALGYELDEIKGKHHSMFVEPAFCDSPAYREFWASLNRGDYLAAEYKRIGKG
GREIWILASYNPILDDKGKPFKVVKFATDVTGQKLKTADLAGQIDAIGKSQAVIEFGI
DGTILDANANFLKVLGYNLADIKGKHHSMFVEPAERDAAAYRTFWAELAAGKYQAAEY
KRIGKGGREVWIQASYNPILDLNGKPFKVVKYATDTTRQVLVRIGNERVRAMMESVAA
GAEELNASVREISEAMTKSRETALTAVSEVDAADGQAHRLNEAAQAMSGIVELISNIT
GQINLLALNATIESARAGEAGRGFAVVAGEVKNLANQAKQATDRIGAEIENLNGISGD
VVGALGKIKAAIQNVSEYVTSTAAAVEEQSTVTGEMSSGMQRAATEAAAIAAA"
misc_feature complement(261818..262126)
/locus_tag="RPD_0226"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(261812..262117)
/locus_tag="RPD_0226"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(261905..261907,261920..261922,
262001..262012,262049..262051,262067..262069,
262079..262081))
/locus_tag="RPD_0226"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(261878..261880,261884..261886,
261968..261973,261980..261982,262007..262009,
262019..262021))
/locus_tag="RPD_0226"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(261452..261760)
/locus_tag="RPD_0226"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(261449..261736)
/locus_tag="RPD_0226"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(261539..261541,261554..261556,
261635..261646,261683..261685,261701..261703,
261713..261715))
/locus_tag="RPD_0226"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(261512..261514,261518..261520,
261599..261604,261611..261613,261641..261643,
261653..261655))
/locus_tag="RPD_0226"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(261089..261394)
/locus_tag="RPD_0226"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(261083..261367)
/locus_tag="RPD_0226"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(261173..261175,261188..261190,
261269..261280,261317..261319,261335..261337,
261347..261349))
/locus_tag="RPD_0226"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(261146..261148,261152..261154,
261236..261241,261248..261250,261275..261277,
261287..261289))
/locus_tag="RPD_0226"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(260546..261055)
/locus_tag="RPD_0226"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(260549..261055)
/locus_tag="RPD_0226"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(260552..260557,260564..260566,
260573..260578,260585..260587,260594..260599,
260606..260611,260615..260620,260627..260629,
260636..260641,260648..260650,260657..260662,
260699..260704,260711..260716,260720..260725,
260732..260737,260744..260746,260753..260758,
260765..260767,260774..260776,260786..260788,
260807..260809,260816..260818,260828..260830,
260837..260842,260849..260851,260858..260860,
260867..260872,260879..260884,260891..260893,
260900..260905,260909..260911,260921..260926,
260930..260935,260942..260944,260951..260956,
260963..260968,260975..260977,260984..260989,
260996..260998,261005..261010,261014..261019,
261026..261028,261035..261040,261047..261052))
/locus_tag="RPD_0226"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(260741..260842)
/locus_tag="RPD_0226"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(262822..264990)
/locus_tag="RPD_0227"
/db_xref="GeneID:4020685"
CDS complement(262822..264990)
/locus_tag="RPD_0227"
/EC_number="2.7.7.8"
/codon_start=1
/transl_table=11
/product="polynucleotide phosphorylase/polyadenylase"
/protein_id="YP_567368.1"
/db_xref="GI:91974709"
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="GeneID:4020685"
/translation="MFNKHSVEIDWGGRPLRLETGKVARQADGAVVATYGETVVLATV
VAAKTPREGVDFLPLTVDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPL
FADGWRNETQVIVTVLSHDMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDE
YVLNPVLDEMPETQLDLVVAGTSDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDA
IIALAEKAAKEPRELTVIDDSAIEKEMLGLVEQELRAAYAIAVKQERYAAVGKVKEKA
IAHFFPEGQEPKYDKLRIAGVFKELEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGV
LPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKETFLLHYNFPPYSVGETG
RLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRVVSEITESNGSSSMASVCGASLA
LMDAGVPLKRPTAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQM
DIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAELGEHAPRIETFKIPTDKI
REVIGTGGKVIREIVEKTGAKVNIEDDGTVKVASSDGESIKAAIKWIKSIASDPEVGE
IYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVVKEGDKVKVKLLGFDD
RGKTRLSMKVVDQDTGEDLEAKQKAEAKAEDEAPAQAAGE"
misc_feature complement(262909..264990)
/locus_tag="RPD_0227"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:183327"
misc_feature complement(264340..264978)
/locus_tag="RPD_0227"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature complement(order(264874..264876,264883..264885,
264889..264891,264895..264897,264925..264927,
264934..264936,264940..264942,264967..264969,
264973..264975))
/locus_tag="RPD_0227"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature complement(order(264625..264639,264649..264651,
264655..264657,264661..264663,264736..264738,
264748..264762,264769..264780,264784..264795,
264799..264801,264805..264807,264850..264852,
264856..264858,264862..264864,264868..264870,
264895..264897,264910..264927))
/locus_tag="RPD_0227"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature complement(264028..264273)
/locus_tag="RPD_0227"
/note="Polyribonucleotide nucleotidyltransferase, RNA
binding domain; Region: PNPase; pfam03726"
/db_xref="CDD:202745"
misc_feature complement(263365..264021)
/locus_tag="RPD_0227"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature complement(order(263365..263370,263380..263382,
263392..263394,263404..263406,263983..263985,
263992..264021))
/locus_tag="RPD_0227"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature complement(order(263686..263694,263698..263700,
263704..263706,263710..263712,263800..263802,
263806..263808,263815..263823,263827..263838,
263845..263847,263851..263853,263899..263907,
263917..263925,263929..263931,263935..263937,
263947..263952,263974..263988,263998..264000,
264004..264006))
/locus_tag="RPD_0227"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature complement(order(263464..263466,263470..263472,
263506..263508,263512..263514,263530..263532,
263671..263679,263779..263781,263791..263793,
263842..263844,263848..263850))
/locus_tag="RPD_0227"
/note="active site"
/db_xref="CDD:206769"
misc_feature complement(263179..263331)
/locus_tag="RPD_0227"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:29003"
misc_feature complement(order(263221..263232,263245..263250,
263257..263262,263269..263283,263287..263295,
263299..263301))
/locus_tag="RPD_0227"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:29003"
misc_feature complement(263269..263280)
/locus_tag="RPD_0227"
/note="G-X-X-G motif; other site"
/db_xref="CDD:29003"
misc_feature complement(262921..263124)
/locus_tag="RPD_0227"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:88437"
misc_feature complement(order(263038..263040,263044..263046,
263074..263076,263098..263100))
/locus_tag="RPD_0227"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88437"
misc_feature complement(262978..262983)
/locus_tag="RPD_0227"
/note="domain interface; other site"
/db_xref="CDD:88437"
gene complement(265334..265603)
/gene="rpsO"
/locus_tag="RPD_0228"
/db_xref="GeneID:4020686"
CDS complement(265334..265603)
/gene="rpsO"
/locus_tag="RPD_0228"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_567369.1"
/db_xref="GI:91974710"
/db_xref="InterPro:IPR000589"
/db_xref="InterPro:IPR005290"
/db_xref="GeneID:4020686"
/translation="MSITAERKAEVIQGNANKAGDTGSPEVQVAILSERIVNLTAHFK
THTKDNHSRRGLLKLVSTRRSLLDYVKKKDEARYKALLEKHNIRR"
misc_feature complement(265352..265585)
/gene="rpsO"
/locus_tag="RPD_0228"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature complement(order(265397..265399,265409..265411,
265448..265453,265457..265462,265466..265468,
265478..265480,265487..265489,265499..265501,
265520..265522,265529..265531,265580..265582))
/gene="rpsO"
/locus_tag="RPD_0228"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(265352..265354,265364..265366,
265484..265486,265493..265495,265502..265507,
265514..265516))
/gene="rpsO"
/locus_tag="RPD_0228"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(265412..265414,265424..265426))
/gene="rpsO"
/locus_tag="RPD_0228"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene complement(265606..266712)
/gene="truB"
/locus_tag="RPD_0229"
/db_xref="GeneID:4020687"
CDS complement(265606..266712)
/gene="truB"
/locus_tag="RPD_0229"
/EC_number="4.2.1.70"
/note="catalyzes isomerization of specific uridines in RNA
to pseudouridine; responsible for residues in T loops of
many tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_567370.1"
/db_xref="GI:91974711"
/db_xref="InterPro:IPR002501"
/db_xref="InterPro:IPR004510"
/db_xref="GeneID:4020687"
/translation="MTMTTSADTLAPQDVQHAGDDAPSSAQLRKPRDNNDPRNTARGK
DGNNKQPRRDKRDVHGWVVLDKPIGMTSTHAVAVVKRLFSAKRAGHAGTLDPLASGGL
PIAMGEATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGKVTQASDLRPTPEAIRALLP
QFTGLIEQTPPQYSAIKIAGERAYDMARDGEIVPLVPRPVEIHELSLVEHDDSGKSVF
EAECGKGTYVRALARDMGRLLGCYGHICALRRTLVGPFDEADMIPLEQLQALCDRAAS
GEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPISSGTVYVTVAG
RLLALAELGNGELIPKRVFNLSGLTASSARKESL"
misc_feature complement(265645..266574)
/gene="truB"
/locus_tag="RPD_0229"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK05389"
/db_xref="CDD:180052"
misc_feature complement(265903..266535)
/gene="truB"
/locus_tag="RPD_0229"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature complement(order(265963..265965,266026..266043,
266119..266121,266182..266196,266344..266346,
266350..266352,266362..266364,266371..266376,
266383..266385,266425..266439,266443..266451,
266485..266487,266494..266496,266500..266502))
/gene="truB"
/locus_tag="RPD_0229"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature complement(order(266026..266028,266428..266439))
/gene="truB"
/locus_tag="RPD_0229"
/note="active site"
/db_xref="CDD:211339"
gene complement(266712..267122)
/gene="rbfA"
/locus_tag="RPD_0230"
/db_xref="GeneID:4020688"
CDS complement(266712..267122)
/gene="rbfA"
/locus_tag="RPD_0230"
/note="associates with free 30S ribosomal subunits;
essential for efficient processing of 16S rRNA; in
Escherichia coli rbfA is induced by cold shock"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_567371.1"
/db_xref="GI:91974712"
/db_xref="InterPro:IPR000238"
/db_xref="GeneID:4020688"
/translation="MSRHQKPTGQSESPRKLRVGELVRHAVAEILAQGGVHDPVLETH
LITVPEVRMSPDLKLATVYVMPLGGRDEKLVIAALEQHKRFLRGEVARRVNLKYAPEI
RFRIDERFAEAERIEKLLRTPAVQKDLEPDSDQD"
misc_feature complement(266733..267098)
/gene="rbfA"
/locus_tag="RPD_0230"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:179054"
gene complement(267294..269945)
/gene="infB"
/locus_tag="RPD_0231"
/db_xref="GeneID:4020689"
CDS complement(267294..269945)
/gene="infB"
/locus_tag="RPD_0231"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_567372.1"
/db_xref="GI:91974713"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="GeneID:4020689"
/translation="MVDTKTPGDKTLSMPTKTLTLKPRVEQGVVRQSFSHGRSKQVVV
EKRGKRRVGGDGPAEPAAAAPEVVKKPTPAPPAVSPRQQPRPSPQQQARSGMVLRTLT
EDERSARATALADARVREVEERRLAEIEAQRRAAQELVDKAEREAAEVRRKAEEERHR
HEEETKRKAETEAKKRFGEAEPAKKPADGRPASTSTTTTAPRAPVTTTTRPPAVAAEA
GDDDEAPRMVRRGPGGGPARPAPPPKQPAAKPGASKQRGRLTLVTALTADDVRERSIA
SFRRRTQRLKGHASNEPKEKLVREVIVPEAISIQELANRMSERAVDVIRMLMKQGAMH
KINDVIDADTAQLIAEELGHTVKRVAASDVEEGLFDVVDNSTDTEPRSPVVTVMGHVD
HGKTSLLDALRHANVVSGEAGGITQHIGAYQVTSPETGTKITFIDTPGHAAFTAMRAR
GAKVTDIVILVVAADDGVMPQTVEAINHAKAAGVPIIVAINKIDKPDAKPERVRTELL
QYNVQVESLGGDVVDVEVSAKNKTNLDKLLEMIALQAELLDLKTNESRPAEGTVIEAK
LDRGRGPVATVLVQRGTLKVGDIIVAGAEMGRVRALISDQGDNVDFAGPSVPVEVLGF
NGPPEAGDRLAVVENEARARQVTSYRAHQKREKAASIVGMRGSLEQMMSQLKTTGRKD
FPLIVKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFSAVILGF
SVRANKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAQILEIF
NISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECG
MAFENYTDMRAGDVIECYRVETIQRSL"
misc_feature complement(267297..269051)
/gene="infB"
/locus_tag="RPD_0231"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature complement(268881..269036)
/gene="infB"
/locus_tag="RPD_0231"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(268302..268799)
/gene="infB"
/locus_tag="RPD_0231"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature complement(268758..268781)
/gene="infB"
/locus_tag="RPD_0231"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature complement(order(268431..268433,268443..268445,
268548..268553,268620..268625,268683..268688,
268734..268739,268746..268748,268755..268760,
268770..268772,268776..268778))
/gene="infB"
/locus_tag="RPD_0231"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature complement(order(268359..268367,268461..268466,
268470..268475,268620..268622,268755..268775))
/gene="infB"
/locus_tag="RPD_0231"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature complement(268686..268706)
/gene="infB"
/locus_tag="RPD_0231"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature complement(268698..268700)
/gene="infB"
/locus_tag="RPD_0231"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature complement(268626..268637)
/gene="infB"
/locus_tag="RPD_0231"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature complement(268575..268631)
/gene="infB"
/locus_tag="RPD_0231"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature complement(268464..268475)
/gene="infB"
/locus_tag="RPD_0231"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature complement(268359..268367)
/gene="infB"
/locus_tag="RPD_0231"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature complement(267990..268274)
/gene="infB"
/locus_tag="RPD_0231"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature complement(267624..267947)
/gene="infB"
/locus_tag="RPD_0231"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature complement(267327..267578)
/gene="infB"
/locus_tag="RPD_0231"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene complement(269938..270732)
/locus_tag="RPD_0232"
/db_xref="GeneID:4020690"
CDS complement(269938..270732)
/locus_tag="RPD_0232"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567373.1"
/db_xref="GI:91974714"
/db_xref="InterPro:IPR007393"
/db_xref="GeneID:4020690"
/translation="MFAAADAADLDDGPRTKKSATERMCAVSRQVRPTGELIRFVVAP
TGEVVADLKRKLPGRGLWVTASRAMVEQAVRRKLFARGFKRDVKAGPTLAADIERLLV
QSACDALAIAAKARQVVSGFGKVSSALKSREAVAMIHAADGAADGIRKLDAVSRQIDG
NETGSRDFPVITVLNSEELDLALGRSNVIHAAVLAGPAGQTFLSRCQILVRYRLVDDG
DAAEAIAGTPINTPKDAADVDAADEEAADEVCANAHNVERLGRLNG"
misc_feature complement(270049..270696)
/locus_tag="RPD_0232"
/note="hypothetical protein; Provisional; Region:
PRK09190"
/db_xref="CDD:181685"
misc_feature complement(270433..270669)
/locus_tag="RPD_0232"
/note="Ylxr homologs; group of conserved hypothetical
bacterial proteins of unknown function; structure revealed
putative RNA binding cleft; proteins are encoded by an
operon that includes other proteins involved in
transcription and/or translation; Region: YlxR; cd00279"
/db_xref="CDD:29345"
misc_feature complement(order(270547..270549,270616..270618,
270664..270666))
/locus_tag="RPD_0232"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29345"
gene complement(270895..272517)
/gene="nusA"
/locus_tag="RPD_0233"
/db_xref="GeneID:4020691"
CDS complement(270895..272517)
/gene="nusA"
/locus_tag="RPD_0233"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_567374.1"
/db_xref="GI:91974715"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR010213"
/db_xref="InterPro:IPR010214"
/db_xref="GeneID:4020691"
/translation="MAVSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARY
GSETDVHAEIDAKKGELRLSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTL
PPLEYGRIAAQSAKQVIVQKVREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLG
RGEAIVRRDEMLPRESFRNGDRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVP
EIYDGIVEIKAVARDPGSRAKIGVVSRDSSVDPVGACVGMRGSRVQAVVNELQGEKID
IIPWSPDIATFVVNALAPAEVSKVVIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLA
SQLTGWDIDILTETEESERRQADFENSTRVFMEALNVDEVVGQLLASEGFTSVEELAM
VDIRELASIEGFDEETATELQARAAEYLDRVETELEARRQELGVEDALKDVPGVTSKM
LVKLGEGDVKTVEDLAGCATDDLVGWTERKEGAEPVKYAGILDGVEMTRDDAEHLIMQ
ARVKAGWITEEELAQTADKGEDAGAETEGAAE"
misc_feature complement(271075..272502)
/gene="nusA"
/locus_tag="RPD_0233"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature complement(272128..272493)
/gene="nusA"
/locus_tag="RPD_0233"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature complement(271909..272109)
/gene="nusA"
/locus_tag="RPD_0233"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature complement(order(272017..272019,272023..272025,
272050..272052,272074..272076))
/gene="nusA"
/locus_tag="RPD_0233"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature complement(order(271924..271926,272023..272025,
272029..272031,272056..272058,272068..272070))
/gene="nusA"
/locus_tag="RPD_0233"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature complement(271612..271818)
/gene="nusA"
/locus_tag="RPD_0233"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature complement(271738..271749)
/gene="nusA"
/locus_tag="RPD_0233"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48407"
misc_feature complement(271483..271668)
/gene="nusA"
/locus_tag="RPD_0233"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature complement(271534..271545)
/gene="nusA"
/locus_tag="RPD_0233"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature complement(271258..271407)
/gene="nusA"
/locus_tag="RPD_0233"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene complement(272520..273308)
/locus_tag="RPD_0234"
/db_xref="GeneID:4020692"
CDS complement(272520..273308)
/locus_tag="RPD_0234"
/note="in Streptococcus pneumoniae this gene was found to
be essential; structure determination of the Streptococcus
protein shows that it is similar to a number of other
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567375.1"
/db_xref="GI:91974716"
/db_xref="InterPro:IPR003728"
/db_xref="GeneID:4020692"
/translation="MTDPIADPVVPDTLAEPRLVVEPGVAARFAAVAEPVLQAMGYRL
VRIKVSGEAGCTVQIMAERPDGTMLIDDCEAVSRALSPVLDVTDPIDRAYRLEISSPG
IDRPLVRSSDFARYSGHLVKIEMAVPHQGRKRYRGLLDGVEGDAIRIQREGVTKDEDP
LVLLPMHDIGDARLVLTDELVAESMRRGKQAERELKQSLGLAPPPPPHAKRSDPKKSS
APKPKPLTKPVVKPDAKPKPKNTKQHRLAADRLRRGDTDLSEGD"
misc_feature complement(272781..273245)
/locus_tag="RPD_0234"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature complement(<272931..>273116)
/locus_tag="RPD_0234"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature complement(272775..273005)
/locus_tag="RPD_0234"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature complement(order(272790..272807,272811..272816,
272820..272828,272865..272867,272886..272888,
272904..272906,272910..272912,272931..272933,
272937..272939))
/locus_tag="RPD_0234"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature complement(order(272814..272816,272874..272876,
272880..272882))
/locus_tag="RPD_0234"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 273587..274672
/locus_tag="RPD_0235"
/db_xref="GeneID:4020693"
CDS 273587..274672
/locus_tag="RPD_0235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567376.1"
/db_xref="GI:91974717"
/db_xref="GeneID:4020693"
/translation="MSAALLLAPELDDVVGHGDAARRADAVRRIADLFVQGAMNFNAE
HVAVFDGVLVRLIPDTDGDLRGELARRFCSLGNAPPTLIEQLAQDEDIGVAGPLLRRS
TQITDDTLVELAEVRGQTHLMAISERPAISPPVTDVIVRRGDRDVLRMVAVNAGAAFS
AFGFSGLIRRAAQDGVLAVAVGVRDDLSLPRLKDLLASSSEPVRRKLFETASPSARIA
INRALRELTGEPMQPSVKRDFAPAQRAIVALHNAGGLTEQALLSFARAFQYEETVAAL
SAMSGVRITTLDPLMAGERHDPMLMLGKALGLDWTTVRAMIGLRRGPDRMPSSPDVEE
ARQNFERLAPSTAHQVVGFWKMRQAMN"
misc_feature 273866..274651
/locus_tag="RPD_0235"
/note="Uncharacterized protein conserved in bacteria
(DUF2336); Region: DUF2336; pfam10098"
/db_xref="CDD:204395"
gene complement(274805..275575)
/gene="trmB"
/locus_tag="RPD_0236"
/gene_synonym="yggH"
/db_xref="GeneID:4020694"
CDS complement(274805..275575)
/gene="trmB"
/locus_tag="RPD_0236"
/gene_synonym="yggH"
/EC_number="2.1.1.33"
/note="tRNA (guanine-N(7)-)-methyltransferase; catalyzes
the formation of N(7)-methylguanine at position 46 (m7G46)
in tRNA by transferring the methyl residue from
S-adenosyl-L-methionine"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(7)-)-methyltransferase"
/protein_id="YP_567377.1"
/db_xref="GI:91974718"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR003358"
/db_xref="InterPro:IPR004395"
/db_xref="GeneID:4020694"
/translation="MITIDRRVQTKCSVLGRHKQVFIDMNETVHHQGSFFGRRKGHKL
RAHQADLVDNLLPHLALDIELPAPDALAELFDAPVEAVRLEIGFGGGEHLIAEALAHP
EIGFIGAEPYVNGMAKILARIEDQNIRNVRLFAGDAAELMAWLPARALKRIDLIHPDP
WPKRRHWKRRFVQDSMIGAMARALIDGGEFRFVSDIDSYNAWTLAHLLRAPEFDWTAE
RADDWRKPWSGYTMTRYGRKAEREGRRASYLRFRRIAA"
misc_feature complement(274850..275473)
/gene="trmB"
/locus_tag="RPD_0236"
/gene_synonym="yggH"
/note="tRNA (guanine-N(7)-)-methyltransferase; Reviewed;
Region: trmB; PRK00121"
/db_xref="CDD:178880"
gene complement(275694..276113)
/locus_tag="RPD_0237"
/db_xref="GeneID:4020695"
CDS complement(275694..276113)
/locus_tag="RPD_0237"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_567378.1"
/db_xref="GI:91974719"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:4020695"
/translation="MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQK
YEKGTNRVGASRIQQISEILQVPVSFLFEGGPSGGLANANGFSEAPSPSYVSDFLATS
EGLALTRAFTKISDAKLRRSIVDLVEQIAAREPADDR"
misc_feature complement(275730..276077)
/locus_tag="RPD_0237"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature complement(275901..276074)
/locus_tag="RPD_0237"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(275973..275975,276048..276050,
276060..276062))
/locus_tag="RPD_0237"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(275976..275978,276051..276053))
/locus_tag="RPD_0237"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(275970..275975,275985..275987,
275994..275996,276027..276032))
/locus_tag="RPD_0237"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene complement(276304..277914)
/gene="lnt"
/locus_tag="RPD_0238"
/db_xref="GeneID:4020696"
CDS complement(276304..277914)
/gene="lnt"
/locus_tag="RPD_0238"
/note="Transfers the fatty acyl group on membrane
lipoproteins"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_567379.1"
/db_xref="GI:91974720"
/db_xref="InterPro:IPR003010"
/db_xref="InterPro:IPR004563"
/db_xref="GeneID:4020696"
/translation="MKLPNLPSLVASSIILAWGWKRAAIAFVAGALSSLAMAPFNAWP
ILFVTFPVAVWLIDGAGAGRWRGVPAAALSGWWFGFGYFVPGLYWIGYAFLVDAQTFA
WLLPVAICGLPAYLALFTALGFALARLLWARGAMRVLALAVSLTIGEWLRGHLLTGFP
WNAFGYALTEPLALAQSVSLIGIWGLTLLAVAIFASPATLFDDGADTRRRWLAPTAAL
GLLIAMAVYGSVRLQITPTQLVEGVRLRIMQPDVQQDRRFNYAAKAEVMQKYLTLSDR
STGPGSTGVRDATLLIWPESAFPFFLTREADAMAQIAELLPKGTILLTGAVRPPEMPP
GRRITRAYNSIYAIDHDGSILAVYDKLHLVPFGEFLPFQNLMEKIGFVQLTKVQGGFL
PGVKRQNIDLPKAPPLLPLICYEAIFPDEIEIRGSRPGWILNLTNDGWFGVSTGPYQH
LQQARMRAVEQGLPLVRAANTGISAVIDPVGRIVGRLDLGVEGVLDASLPSQIAPTVY
ARVGDVPAAVLVALSMTLVLLRRRAPPR"
misc_feature complement(276307..277872)
/gene="lnt"
/locus_tag="RPD_0238"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
lnt; PRK00302"
/db_xref="CDD:178970"
misc_feature complement(276349..277188)
/gene="lnt"
/locus_tag="RPD_0238"
/note="Apolipoprotein N-acyl transferase (class 9
nitrilases); Region: ALP_N-acyl_transferase; cd07571"
/db_xref="CDD:143595"
misc_feature complement(order(276604..276606,276664..276669,
276673..276678,276811..276813,276823..276825,
276835..276837,277030..277032))
/gene="lnt"
/locus_tag="RPD_0238"
/note="putative active site [active]"
/db_xref="CDD:143595"
misc_feature complement(order(276676..276678,276835..276837,
277030..277032))
/gene="lnt"
/locus_tag="RPD_0238"
/note="catalytic triad [active]"
/db_xref="CDD:143595"
misc_feature complement(order(276358..276372,276496..276501,
276535..276540,276544..276552,276556..276561,
276637..276642,276655..276669,276673..276675,
276787..276795,276814..276816,276823..276834))
/gene="lnt"
/locus_tag="RPD_0238"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143595"
gene complement(277926..279053)
/locus_tag="RPD_0239"
/db_xref="GeneID:4020697"
CDS complement(277926..279053)
/locus_tag="RPD_0239"
/codon_start=1
/transl_table=11
/product="HlyC/CorC family transporters"
/protein_id="YP_567380.1"
/db_xref="GI:91974721"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:4020697"
/translation="MPDGDSTQNAAQPAEQDLSRQQLPAVVHQGEVLRPVAGAWLIRA
IRSLFGWKPGSVRDDLQVVLDTSPPDDTGFTALERTMLRNILGLHERRIADVMVHRAD
IVAIKQEIPLGELMSLFEGAAHSRLVVYNETLDDPVGLVHIRDLVAFMTSKAKVAPQT
VAKRKKTLPAGLDLRAIDLKMPLTETGIIRKLLYVPPSMRAIDLLAQMQAARIHLALV
VDEYGGTDGLVSIEDIVEQIVGEIDDEHDSAEPPSIVRQPDGSFIADARTSLEDASVM
IGDDFVTGEAGEDVETLGGYLVNHVGRLPVRGEVISGPGNFEIEVLDADPRRVKRLRI
GIRKERAVARPRETRRREPASDQPATAPTDTTNPNPSPPGE"
misc_feature complement(278052..>278939)
/locus_tag="RPD_0239"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:31445"
misc_feature complement(278343..278753)
/locus_tag="RPD_0239"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(278052..278291)
/locus_tag="RPD_0239"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(279055..279642)
/locus_tag="RPD_0240"
/db_xref="GeneID:4020698"
CDS complement(279055..279642)
/locus_tag="RPD_0240"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567381.1"
/db_xref="GI:91974722"
/db_xref="InterPro:IPR002036"
/db_xref="GeneID:4020698"
/translation="MPQSNAGGRSDCIGAARDSSFGPMSSSAIPATEVVIAADCWQAE
ASAESVVLRAIEAAATMIDADTGDAELAVMLTDDDGVRALNASYRGIDKPTNVLSFPA
PQPDYQDACQDSGGAPQMLGDIAIAYQTVRREADDEGKPFAHHLSHLAVHGFLHLVGY
DHETDAEAETMESTERSILAGLGIPDPYADQDRVS"
misc_feature complement(279067..279540)
/locus_tag="RPD_0240"
/note="metal-binding heat shock protein; Provisional;
Region: PRK00016"
/db_xref="CDD:178796"
gene complement(279642..280697)
/locus_tag="RPD_0241"
/db_xref="GeneID:4020699"
CDS complement(279642..280697)
/locus_tag="RPD_0241"
/codon_start=1
/transl_table=11
/product="PhoH-like protein"
/protein_id="YP_567382.1"
/db_xref="GI:91974723"
/db_xref="InterPro:IPR003714"
/db_xref="InterPro:IPR004088"
/db_xref="GeneID:4020699"
/translation="MAKSASDSSSLISRRKLERDSQTPPETQVVVAFDDNRAASALVG
PYGQHLAQIERRLAVVVDSRGNHITIAGARESCDSARRVLETLYAQAVSGSDISQGDV
DGAIRAVIAQGSLFEFDSKPAAGVFEAINLRKRPVRARTAAQDSYIRALKRHELVFGV
GPAGTGKTWLAVAHAAQLFERKEVDKIILTRPAVEAGERLGFLPGDLREKVDPYLRPI
YDALYDLMDSRIVERALQTNEIEIAPLAFMRGRTLTNAAIILDEAQNTTSMQMKMFLT
RLGENSRMIVTGDPSQVDLPNGQTSGLSEAVRLLSGVEGIAQVKFTAEDVIRHELVAR
IVAAYEGAPPKPAGGAA"
misc_feature complement(279690..280622)
/locus_tag="RPD_0241"
/note="Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms]; Region:
PhoH; COG1702"
/db_xref="CDD:31888"
misc_feature complement(279690..280292)
/locus_tag="RPD_0241"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
misc_feature complement(280194..280208)
/locus_tag="RPD_0241"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(279906..279917)
/locus_tag="RPD_0241"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
gene complement(280703..282124)
/locus_tag="RPD_0242"
/db_xref="GeneID:4020700"
CDS complement(280703..282124)
/locus_tag="RPD_0242"
/note="catalyzes the formation of
2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at
position 37 in tRNAs that read codons beginning with
uridine from N6-(dimethylallyl)adenosine (i(6)A)"
/codon_start=1
/transl_table=11
/product="(dimethylallyl)adenosine tRNA
methylthiotransferase"
/protein_id="YP_567383.1"
/db_xref="GI:91974724"
/db_xref="InterPro:IPR002792"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006463"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4020700"
/translation="MAPPRKLHIKSYGCQMNVYDAQRMVDVLAPEGFVETATVDDADL
VILNTCHIREKASEKVYSELGRLRLARDEAASSGRRMQIAVAGCVAQAEGEEIVRRAP
VVDVVVGPQSYHHLPQLLARADQAGRALETEFPVEDKFGFLPQPRPETIRARGISAFV
TVQEGCDKFCTFCVVPYTRGAEVSRPVSAIIDDVKRLADNGVREITLIGQNVNAYHGE
GPDSRAWTLGRLLRRLAAVPGIVRLRYSTSHPNDVDDELIEAHRDLDALMPFVHLPVQ
SGSDPILAAMNRKHTAADYRRVIDRFRAVRPQIAFSSDFIVGFPGETEADFAATLALV
TQIGYAGAYSFKYSPRPGTPAADMQEMVPAAVMDERLERLQQLIDSQQSAFNKAAIGQ
TVDVLFERAGRKPGQIVGRTAYLQPAHVFPGPMFLGPGMAPDSLVGQILPVRVDSLER
YSLLGELAAKPPQHARPLAATGA"
misc_feature complement(280736..282121)
/locus_tag="RPD_0242"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14325"
/db_xref="CDD:184622"
misc_feature complement(281798..282109)
/locus_tag="RPD_0242"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature complement(281006..281632)
/locus_tag="RPD_0242"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(281084..281086,281177..281179,
281321..281323,281381..281389,281492..281497,
281501..281503,281603..281611,281615..281617,
281621..281623,281627..281629))
/locus_tag="RPD_0242"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(280754..280957)
/locus_tag="RPD_0242"
/note="TRAM domain; Region: TRAM; cl01282"
/db_xref="CDD:120537"
gene complement(282222..282875)
/locus_tag="RPD_0243"
/db_xref="GeneID:4020701"
CDS complement(282222..282875)
/locus_tag="RPD_0243"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_567384.1"
/db_xref="GI:91974725"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006402"
/db_xref="InterPro:IPR006439"
/db_xref="GeneID:4020701"
/translation="MRPDLVIFDCDGVLVDSEVISCRVHAETLTRHGYPITTEQVAER
FLGRSGREARREIEAELGRVFSDDLEAQLVADVLRSFAESLEPIPHIIAALDALTQPV
CVASSGTLERIAFALNRTGLYRRFAPNLFSAEQVANGKPAPDLFLHAARQMGVPPSRC
VVIEDSVPGILGARAAGMTALGFVGGSHCLPGMDARLRAAGASAIFDDMRQLYDFII"
misc_feature complement(282240..282872)
/locus_tag="RPD_0243"
/note="Predicted phosphatase/phosphohexomutase [General
function prediction only]; Region: COG0637"
/db_xref="CDD:30982"
misc_feature complement(282327..282632)
/locus_tag="RPD_0243"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(282558..282560)
/locus_tag="RPD_0243"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(282970..283401)
/locus_tag="RPD_0244"
/db_xref="GeneID:4020702"
CDS complement(282970..283401)
/locus_tag="RPD_0244"
/codon_start=1
/transl_table=11
/product="ferric-uptake regulator"
/protein_id="YP_567385.1"
/db_xref="GI:91974726"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:4020702"
/translation="MSELKATEIEARCAATGMRMTEQRRVIARVLAEAVDHPDVEELY
TRCVAVDDKISISTVYRTVKLFEDAGIIERHDFREGRARYEQMRDSHHDHLINLRDGK
VIEFTNEEIEKLQAEIARKLGYRLVDHRLELYCVPLDDDKT"
misc_feature complement(282994..283335)
/locus_tag="RPD_0244"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(283087..283089,283120..283122,
283126..283128,283147..283149,283291..283293))
/locus_tag="RPD_0244"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(283195..283239)
/locus_tag="RPD_0244"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(283015..283017,283066..283068,
283123..283125,283129..283131))
/locus_tag="RPD_0244"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(282994..283020,283024..283032,
283057..283062,283108..283116))
/locus_tag="RPD_0244"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(283102..283104,283111..283113))
/locus_tag="RPD_0244"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(283463..283948)
/locus_tag="RPD_0245"
/db_xref="GeneID:4020703"
CDS complement(283463..283948)
/locus_tag="RPD_0245"
/codon_start=1
/transl_table=11
/product="ribosomal-protein-alanine acetyltransferase"
/protein_id="YP_567386.1"
/db_xref="GI:91974727"
/db_xref="InterPro:IPR000182"
/db_xref="InterPro:IPR006464"
/db_xref="GeneID:4020703"
/translation="MMTWLAEFWGYADALVEPATLSDSPKLAQLHAASFHSGWSEEEF
ADLLSQRNTLVHRLRMGRRIIGFIASRFGADEAEILSVAVASGYRGRGLSRELLLTHL
GHLAGRGVAKVFLEVEENNQPARRLYQRSGFEIVGRRERYYRQPDGEQLNALIMRRDL
S"
misc_feature complement(283481..283882)
/locus_tag="RPD_0245"
/note="ribosomal-protein-alanine acetyltransferase;
Region: rimI; TIGR01575"
/db_xref="CDD:162430"
misc_feature complement(283601..283762)
/locus_tag="RPD_0245"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(283664..283669,283697..283705))
/locus_tag="RPD_0245"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(283959..284654)
/locus_tag="RPD_0246"
/db_xref="GeneID:4020704"
CDS complement(283959..284654)
/locus_tag="RPD_0246"
/codon_start=1
/transl_table=11
/product="peptidase M22, glycoprotease"
/protein_id="YP_567387.1"
/db_xref="GI:91974728"
/db_xref="InterPro:IPR000905"
/db_xref="GeneID:4020704"
/translation="MLILAIDTALDACAAAVLDTDVNRLLARESQPMQRGHAEALMPL
LGRVMQSSGIGFADLDRIAVTTGPGSFTGLRVGLSAARGIALAAGKPVVGLTTLSAFA
APLVSERDDTPILSAIDARHDQVYYQLVSGNGTRLVRPRVAPIAEALEAVRHGAPRLV
GNAAGLLAARWPALTPPAPLIDQQPAPDILWVAWLGAAANPETAPARPFYLRAPDARP
QADALARSQQPAA"
misc_feature complement(284019..284588)
/locus_tag="RPD_0246"
/note="universal bacterial protein YeaZ; Region:
bact_YeaZ; TIGR03725"
/db_xref="CDD:211869"
misc_feature complement(<284274..284555)
/locus_tag="RPD_0246"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene complement(284798..285364)
/locus_tag="RPD_0247"
/db_xref="GeneID:4020705"
CDS complement(284798..285364)
/locus_tag="RPD_0247"
/codon_start=1
/transl_table=11
/product="nitrogen-fixing NifU-like protein"
/protein_id="YP_567388.1"
/db_xref="GI:91974729"
/db_xref="InterPro:IPR001075"
/db_xref="GeneID:4020705"
/translation="MFIQTEPTPNPATLKFIPGRVVLDSGTMEFTDRKQAARSPLAER
LFEVEGVSGVFYGSDFVTVTKDGAGDWQHLKPAILGAIMEHYMSGAPIMADGRVDGDE
TDEDEFFAERDAETVEIIKDLIETRVRPAVANDGGDITFRGFKDGVVYLAMKGACSGC
PSSTATLQHGIQNLLKHFVPEVVEVRPV"
misc_feature complement(285098..285358)
/locus_tag="RPD_0247"
/note="Scaffold protein Nfu/NifU N terminal; Region:
Nfu_N; pfam08712"
/db_xref="CDD:204038"
misc_feature complement(284801..285016)
/locus_tag="RPD_0247"
/note="Thioredoxin-like proteins and domains
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0694"
/db_xref="CDD:31038"
gene complement(285516..286010)
/locus_tag="RPD_0248"
/db_xref="GeneID:4020706"
CDS complement(285516..286010)
/locus_tag="RPD_0248"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567389.1"
/db_xref="GI:91974730"
/db_xref="GeneID:4020706"
/translation="MSTQRQSYRPDHRPKCLVIVDDTAEWDRAVYYASRWAVRVGGGV
VMLRVIEILDQNQQWLGVADVMRAEAIEIAEQALDRASGRANGVAGITPERVIREGDT
IAQVRKVIESDVDITTLVLAAGDGPEGPGPIVTAMVRHLGSFPVPVVMVASGLTDDDI
DALS"
misc_feature complement(285558..285968)
/locus_tag="RPD_0248"
/note="Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases, ATP sulphurylases Universal
Stress Response protein and electron transfer flavoprotein
(ETF). The domain forms a apha/beta/apha fold which binds
to Adenosine nucleotide; Region: AANH_like; cl00292"
/db_xref="CDD:213090"
gene complement(286169..287215)
/locus_tag="RPD_0249"
/db_xref="GeneID:4020707"
CDS complement(286169..287215)
/locus_tag="RPD_0249"
/EC_number="6.1.1.2"
/note="catalyzes a two-step reaction, first charging a
tryptophan molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_567390.2"
/db_xref="GI:162138292"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002306"
/db_xref="GeneID:4020707"
/translation="MTTQRVFSGVQPTGNLHLGNYLGAIVNFVKLQETHNCIYCVVDL
HAITVPVTVWGGPDELRRNTREVTAAFIAAGIDPNKHIIFNQSQVAEHAELAWVFNCV
ARLGWLNRMTQFKEKAGKDRENASIGLYDYPVLMASDILVYRATHVPVGEDQKQHLEL
TRDIAQKFNNDFAESIAAQGLGDSYFPMPEPVITGPATRVMSLRDGTKKMSKSDPSDY
SRINLTDDADAIAQKIRKAKTDPEPLPSEEKGLETRPEADNLVGIYAALAGKPKTDVL
AEFGGAQFSAFKSSLVDLAVEKLSPIAGEMKRLSADHGYVDSVLASGSDRARVIAAET
MVGVKDIMGMVRKR"
misc_feature complement(286184..287203)
/locus_tag="RPD_0249"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature complement(286325..287203)
/locus_tag="RPD_0249"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature complement(order(286580..286582,286586..286591,
286619..286621,286745..286747,286754..286759,
286763..286768,286772..286774,286799..286801,
286808..286810,286820..286822,286958..286960,
287081..287083,287096..287098,287147..287149,
287156..287161,287165..287167,287183..287197))
/locus_tag="RPD_0249"
/note="active site"
/db_xref="CDD:173903"
misc_feature complement(287156..287167)
/locus_tag="RPD_0249"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature complement(order(286811..286816,286823..286828,
286832..286834,286889..286894,286898..286909,
286913..286918,286925..286933,286937..286942,
287072..287077,287084..287086))
/locus_tag="RPD_0249"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature complement(286577..286591)
/locus_tag="RPD_0249"
/note="KMSKS motif; other site"
/db_xref="CDD:173903"
gene complement(287292..288848)
/locus_tag="RPD_0250"
/db_xref="GeneID:4020708"
CDS complement(287292..288848)
/locus_tag="RPD_0250"
/codon_start=1
/transl_table=11
/product="integral membrane protein MviN"
/protein_id="YP_567391.1"
/db_xref="GI:91974732"
/db_xref="InterPro:IPR004268"
/db_xref="GeneID:4020708"
/translation="MIRPILTVSAGTLSSRLLGFVRDALVAALLGAGVVADAFLLAFQ
LVNVARRLLTEGALNAALVPAWLRVREHNGAVAAAAYAGRLLGTVALATLLLALLLGV
FMPLLIALLAPGFVGHPTLLMATRDARLMLPYLAFAGPVAVMMGLFNAQGKVGLTAFS
PLLFNVALIVVTAALLLWHANDTQAALILSATIGVAGLMQLGIVVFNGRGERLATPLR
ASFDPSMRAFFAKAIPGMIANSGPQLLIVIGAIVASSKPSAVSWLYFANRLIELPLGI
VGVAMGAVLVPELARAVRGDDRAALSDAASRGLELAIGVALPAMLGLIVLREPIVRVL
FEHGAFTASDTAATALALGLLALGLPAQVLAKTWSAAFFAREDTSTPLFATLVALGVA
LAAALLLGRTYGASGVAAAIALGAWSNAALLLGRGLARFGVAIDPAARRRVALIVLAA
GAMGGLLWLKAGFVLPLVAEASTLAQAAVLGVLIAGGLIIYAALLILFGVVRPAAALG
ALRRPRGLRG"
misc_feature complement(<287700..288848)
/locus_tag="RPD_0250"
/note="Uncharacterized membrane protein, putative
virulence factor [General function prediction only];
Region: MviN; COG0728"
/db_xref="CDD:31072"
gene 289114..290115
/locus_tag="RPD_0251"
/db_xref="GeneID:4020709"
CDS 289114..290115
/locus_tag="RPD_0251"
/codon_start=1
/transl_table=11
/product="PfkB"
/protein_id="YP_567392.1"
/db_xref="GI:91974733"
/db_xref="InterPro:IPR002173"
/db_xref="InterPro:IPR003016"
/db_xref="InterPro:IPR011611"
/db_xref="GeneID:4020709"
/translation="MSSAQYDVLGIGNAIFDVLVRTEDDFLVRHGMAKGGMALIDEAR
AAAIYADMGMATEISGGSAANTIVGLASFGARAVYVGKVKDDQIGKLYSHDIRAAGVT
FDTRPASDGPATGCSYILVTPDGERTMNTYLGAAQDLGPADIDEAQIAAAAITYLEGY
LWDPPQAKEAFLKASKIAHGAGRKVALTLSDSFCVDRYRGEFIELMRSRTVDLIFANE
SELHSLYQTSDFDTALKQLALDVPLGVVTRSEKGCAVVEENNITLVPAAKIDTLVDTT
GAGDLFAAGFLFGLVRNAGYENAGRLAALAAAEVIQHIGARPQVSLKELAQQHGLPV"
misc_feature 289129..290070
/locus_tag="RPD_0251"
/note="Adenosine kinase (AK) catalyzes the phosphorylation
of ribofuranosyl-containing nucleoside analogues at the
5'-hydroxyl using ATP or GTP as the phosphate donor.The
physiological function of AK is associated with the
regulation of extracellular adenosine...; Region:
adenosine_kinase; cd01168"
/db_xref="CDD:29352"
misc_feature 289132..290100
/locus_tag="RPD_0251"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature order(289150..289152,289156..289158,289162..289164,
289222..289224,289291..289299,289306..289308,
289462..289464,289498..289500,289504..289506,
289510..289512,289591..289593,289690..289692,
289939..289944,289951..289953)
/locus_tag="RPD_0251"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29352"
misc_feature order(289852..289854,289858..289863,289870..289872,
289903..289905,289909..289911,289927..289929,
289936..289938,289945..289950,289957..289959,
290032..290034,290044..290046)
/locus_tag="RPD_0251"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29352"
gene complement(290262..291956)
/locus_tag="RPD_0252"
/db_xref="GeneID:4020710"
CDS complement(290262..291956)
/locus_tag="RPD_0252"
/EC_number="2.3.1.86"
/note="activates fatty acids by binding to coenzyme A"
/codon_start=1
/transl_table=11
/product="AMP-binding domain-containing protein"
/protein_id="YP_567393.1"
/db_xref="GI:91974734"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4020710"
/translation="MTDKAPSYVCGVSDAPLLGITIGQALDLAAQRWPDREALVSPSH
DTRWTWREFAACVDALAAGFLALGLERGARIGIWSMNRPEWTLTQFAAAKAGLILVTI
NPAYRLSELEFALAKVGCAALVTATAFKTSAYMEMLNTLIPELSQSQPGALQSSKLPH
LRAVIQIGGPKCPGTVAFDDLAQMGGARHREALAALAGRLQFDDAVNIQFTSGTTGSP
KGVTLTHHNILNNGYFVGRAMKLTEQDRICIPVPLYHCFGMVMGNLAAVTSGATMVYP
GEGFDPLATLQTASREKCTALYGVPTMFIAELDHPEFASFDLSSLRTGIMAGAPCPVE
VMRRVNDQMNMREVTIAYGMTETSPVSFQSAVDDPEQRRVSTVGRIHPHVEVKVVDLE
GRIVPRGQRGELCTRGYSIMLGYWDEAEKTADVLDRTGWMHTGDLAVIDDEGFCNIVG
RIKDMVIRGGENLYPREIEEFLYRHPKIQDVQIFGVADNRYGEELCAWVRVRSGEKLT
ADDIRAFCQGQIAHNKIPRYIEFVDEFPMTVTGKIQKFVMREKVESKLGLVAAKTA"
misc_feature complement(290271..291944)
/locus_tag="RPD_0252"
/note="AMP-binding domain protein; Validated; Region:
PRK08315"
/db_xref="CDD:181380"
misc_feature complement(290514..291812)
/locus_tag="RPD_0252"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(<290298..290387)
/locus_tag="RPD_0252"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene complement(292089..293276)
/locus_tag="RPD_0253"
/db_xref="GeneID:4020711"
CDS complement(292089..293276)
/locus_tag="RPD_0253"
/codon_start=1
/transl_table=11
/product="beta-lactamase"
/protein_id="YP_567394.1"
/db_xref="GI:91974735"
/db_xref="InterPro:IPR001466"
/db_xref="GeneID:4020711"
/translation="MQSRANIDQLLQQSCERGDIPGVVAVAGSSTEVLYEGAFGKRDL
SKPQPMTTDSVFWIASMTKAITSAAAMQLVEQGKLSLDEPIGKVLPDLAEPLVLDGFD
ASGNPITRPANAPITLRQLLTHTAGFCYDMWNGDMVKYMERYDIPGVLRCREAALKVP
IMSDPGARWEYGISIDFVGRVVEAASGERLDAYLRDDILAPLGMSDTGFRITDAQRER
LVAVHSRGADGTLAPIEFEVEQEPEFIMGGGGLYGTAADYLKFTRMILNKGRGNGNQV
LKPETVALMGQNHIGDLNVTRLNSVIPFATNDVDLYPGMDNKWGLSFLINTATTPEGR
SAGSLAWAGLANTYYWIDPTRDVCGVILMQVLPFADGKCLEAFAGFERGVYAGLDAGK
KAA"
misc_feature complement(292137..293261)
/locus_tag="RPD_0253"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature complement(292134..293258)
/locus_tag="RPD_0253"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene 293543..293869
/locus_tag="RPD_0254"
/db_xref="GeneID:4020712"
CDS 293543..293869
/locus_tag="RPD_0254"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567395.1"
/db_xref="GI:91974736"
/db_xref="GeneID:4020712"
/translation="MIPSWSAWKRYPQAGRGNIEAPISPGVYEIRNANDGSLVGFEAV
DNLAMALARLQVGPKRLGGWFGRRAPAAAPELEYRVCATTTRAHARAAAEHMINRRET
WFSRAA"
gene 294048..295541
/locus_tag="RPD_0255"
/db_xref="GeneID:4020713"
CDS 294048..295541
/locus_tag="RPD_0255"
/EC_number="1.2.1.16"
/codon_start=1
/transl_table=11
/product="succinic semialdehyde dehydrogenase"
/protein_id="YP_567396.1"
/db_xref="GI:91974737"
/db_xref="InterPro:IPR002086"
/db_xref="InterPro:IPR010102"
/db_xref="GeneID:4020713"
/translation="MSPTTAARKSDAASSLRDRLKDPSLLREQCFIDGAWIGTGATVV
TNPANGQELGKVPKMGADETTQAVEAAARAFPAWAKLTAKQRSNILRKWFELIVAHRE
DLALILTSEQGKPLAEALGEVDIGAAYVEFFAEEARRVYGETIPTQRADARLIAIKQP
IGVCGAITPWNFPNSMITRKVSPALAAGCPVVLKPANETPFSALALAALAEKAGVPKG
VFNVVTGHASAIGKVLCEHPAVRFVGFTGSTEVGKILYQQAAVGVKKLGLELGGNAPF
IVFDDADIDAAVEGAMVSKYRNMGQTCVCANRIYVQDSVYDAFVDKLAAKVSAMKIGD
GAEPGVTQGPLINEAAVEKTENHIADAVAHGAKVIVGGKRHALGGTFFEPTVLANVRP
DALVAHEETFGPLAPVFRFKDEAEVIRLANNSPFGLASYFYARDIGRVWRVAEALESG
MVGVNSGLITTEVAPFGGVKESGLGREGSHHGMEEYVEIKYVMMAGI"
misc_feature 294081..295538
/locus_tag="RPD_0255"
/note="succinic semialdehyde dehydrogenase; Region:
PLN02278"
/db_xref="CDD:177917"
misc_feature 294177..295523
/locus_tag="RPD_0255"
/note="Mitochondrial succinate-semialdehyde dehydrogenase
and ALDH family members 5A1 and 5F1-like; Region:
ALDH_F5_SSADH_GabD; cd07103"
/db_xref="CDD:143421"
misc_feature order(294291..294293,294318..294320,294441..294443,
294450..294455,294459..294485,294501..294509,
294522..294524,294768..294770,294804..294806,
294816..294818,294825..294827,294996..294998,
295008..295010,295146..295148,295350..295352,
295356..295361,295371..295373,295377..295379,
295386..295388,295392..295412,295428..295430,
295437..295442,295458..295460,295473..295475,
295509..295523)
/locus_tag="RPD_0255"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:143421"
misc_feature order(294546..294560,294582..294584,294627..294629,
294633..294638,294780..294791,294798..294800,
294807..294812,294852..294860,294954..294956,
295245..295247,295251..295253,295329..295331,
295443..295445)
/locus_tag="RPD_0255"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143421"
misc_feature order(294558..294560,294852..294854,294945..294947,
294954..294956)
/locus_tag="RPD_0255"
/note="catalytic residues [active]"
/db_xref="CDD:143421"
gene complement(295704..296390)
/locus_tag="RPD_0256"
/db_xref="GeneID:4020714"
CDS complement(295704..296390)
/locus_tag="RPD_0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567397.1"
/db_xref="GI:91974738"
/db_xref="GeneID:4020714"
/translation="MRRAVGLALGLLLTAAPAHAQDSATLKKDMVGQWELSTTERSKT
CVVTLKPDAAPRGMKLELEPGCAAALPFTRDIAAWTVKGLDIVRLETAAGDPVIDFTE
VESGIFEGLRANEGVYILQNLAAARSLAKSMEQMIGDWSMVRGSGRPICSLTLTNNEA
STPDNFQAFLKPRCEPPVAGFGPTMWRLERGALLLTAPSGEIWRFEADDNAQWRKTPD
TADPLIMLRQ"
gene complement(296392..297378)
/locus_tag="RPD_0257"
/db_xref="GeneID:4020715"
CDS complement(296392..297378)
/locus_tag="RPD_0257"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenase"
/protein_id="YP_567398.1"
/db_xref="GI:91974739"
/db_xref="InterPro:IPR006139"
/db_xref="InterPro:IPR006140"
/db_xref="GeneID:4020715"
/translation="MAGEAGATDKIDLLIYGPSKPVINDGFPEQYALHKCEQPGDLDR
LTDDIRARIRGVAVTGLVPTNSSVLARYPKLEIVSSFGVGYDHIDSGWAAEHDVVVTN
TPDVLTEEVADTALGLLIATLREFVRADKYVRSGSWLTQPYPLSVGSLRDRKVGLIGM
GRIGQAIARRLDASRVPVVYHARNPAAGVSYQHYPDLIAMAKDVDTLIVIIPGGASTA
RLINAEVLQALGPRGVLINVARGSVVDEPALIAALKSGAILAAGLDVFADEPKVPDEL
RMMQNVILLPHIGSASVVTRNAMDQLVVDNIKAWFDGKPPLTPIPETPVRGR"
misc_feature complement(296410..297351)
/locus_tag="RPD_0257"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature complement(296512..297033)
/locus_tag="RPD_0257"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene complement(297378..298202)
/locus_tag="RPD_0258"
/db_xref="GeneID:4020716"
CDS complement(297378..298202)
/locus_tag="RPD_0258"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport systems
inner membrane component"
/protein_id="YP_567399.1"
/db_xref="GI:91974740"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4020716"
/translation="MSGRAPTGPRPSRISAASWLRVLLPFVVLAAGVAVWDLVVRINQ
IPPYVLPGPGLVWQTLVADWPILSVSLLATLWTTLKGFLAAAIGGVALALLFNQSRWV
EYSLFPYAVVLQVTPVIAIAPLLLIYLPQETAVVVCAWIVAFFPVLANTTLGLNSVDR
NLAGLFRLYGASPLQTLLRLKLPAALPYILGGLRIAGGLSLIGAVVAEIAAGSAGAGS
GLAYRIAESGYRLNIPRMFAALLLLSAAGIVIYLLLALVSHLLLRRWHESALGKDN"
misc_feature complement(297450..298172)
/locus_tag="RPD_0258"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(<297603..>297809)
/locus_tag="RPD_0258"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
gene complement(298199..299011)
/locus_tag="RPD_0259"
/db_xref="GeneID:4020717"
CDS complement(298199..299011)
/locus_tag="RPD_0259"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_567400.1"
/db_xref="GI:91974741"
/db_xref="InterPro:IPR001687"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4020717"
/translation="MALSSSPDLDGPAAACAIRLRAATKVYRGGVEALGPIDLDIGRG
EFVSLLGSSGCGKSTALRLIAGLAKPSSGSVRVAGEATRRRGGHAIGFVFQEPTLMPW
SSVRANVGLPLKIAHAPAAEIARHVDAALARVELSDFAEAYPRELSGGMKMRVSLARA
LVTDPDILLMDEPFAALDEITRFRLNDDLLALWRDLGKTILFVTHSVFESVYLSQRVV
VMSPRPGRIAAEFRIEAPEPRGDEFRTSTGYAAQCRDVSRALADASAAQVRA"
misc_feature complement(298214..298942)
/locus_tag="RPD_0259"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature complement(298310..298942)
/locus_tag="RPD_0259"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(298838..298861)
/locus_tag="RPD_0259"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(298397..298399,298496..298501,
298727..298729,298835..298843,298847..298852))
/locus_tag="RPD_0259"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(298727..298738)
/locus_tag="RPD_0259"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(298544..298573)
/locus_tag="RPD_0259"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(298496..298513)
/locus_tag="RPD_0259"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(298478..298489)
/locus_tag="RPD_0259"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(298391..298411)
/locus_tag="RPD_0259"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(299022..300143)
/locus_tag="RPD_0260"
/db_xref="GeneID:4020718"
CDS complement(299022..300143)
/locus_tag="RPD_0260"
/codon_start=1
/transl_table=11
/product="perplasmic binding protein of ABC transporter"
/protein_id="YP_567401.1"
/db_xref="GI:91974742"
/db_xref="GeneID:4020718"
/translation="MTPAFLLRALTGAVAVALLAVPVHASPPPAPEKPVEKPAPPPPP
KKPPPPVVQPVRKVPEGGFDKVSFGTNWVAEGEHGGFFQAVADDTYKSYGLNVTIVPG
GPNVNNRALLLAGKLDFFMTANTLQSFDAVANNVPVVAIAAVFQKDPQVFLTHPESKV
GQLDDLKRLTLFVSKEGIASYFQWLKSEYGFNEAKVKPYTSNPQPFIVDRNAAMQGYV
TSEPFVIEQKAKFKPSVLLLADYGLDGYSTLIETRRDLIDKNPDMIQRFVDASMIGWY
NYLYGDNAAGNALIKSLNPEMTDEMLAYSVAKMKEYGIVDSGDTLRNGIGAMSDERYA
SFFDKMSRAGVVKRDLDFRQAYTLQFTNKGVGVDLRPSR"
misc_feature complement(299319..299918)
/locus_tag="RPD_0260"
/note="NMT1/THI5 like; Region: NMT1; pfam09084"
/db_xref="CDD:192206"
gene 300297..301109
/locus_tag="RPD_0261"
/db_xref="GeneID:4020719"
CDS 300297..301109
/locus_tag="RPD_0261"
/codon_start=1
/transl_table=11
/product="creatininase"
/protein_id="YP_567402.1"
/db_xref="GI:91974743"
/db_xref="InterPro:IPR003785"
/db_xref="GeneID:4020719"
/translation="MTRLPPRDWTEIRWPEIGDADPARWIAVLPLAATEQHGPHLPLG
TDVMIARAYLARVHELLPAELPVSFLPLQPIGLSTEHLAFPGTLTLGTETALRLWTEI
GDSVARAGVRKLVMVTSHGGNSAAMSLVAQELRARHAMLAVTTGWARFGLPDGLFADD
ELRHGIHGGAVETSIMLAHAPQQVRTDRIADFRPATAAMEHEFRWLSAQRPAPFAWAA
QDLHPSGAIGDATAASADKGRKALDHGARAFCELLADVDRFDLATLRPAPRP"
misc_feature 300363..301058
/locus_tag="RPD_0261"
/note="Creatinine amidohydrolase; Region: Creatininase;
pfam02633"
/db_xref="CDD:202323"
gene complement(301191..302822)
/locus_tag="RPD_0262"
/db_xref="GeneID:4020720"
CDS complement(301191..302822)
/locus_tag="RPD_0262"
/codon_start=1
/transl_table=11
/product="ferredoxin-dependent glutamate synthase"
/protein_id="YP_567403.1"
/db_xref="GI:91974744"
/db_xref="InterPro:IPR002932"
/db_xref="GeneID:4020720"
/translation="METILLPFSPRYIALTICAVLTALFASIAITDYHTSLFGVMLTL
ALVFGALTLLGVRDLLQKNHAVLRNYPISAHLRFLLEEIRPEMRQYFFESEKDGKPFS
RDTRALIYQRAKMVLDKRPFGTQEDVYGDGYEWMHHSVAPRPHAEERFRITIGGPDCA
KPYSASVFNISAMSFGALSPNAVRALNAGAKKGGFAHDTGEGGVSPYHREHGGDLIWE
IGSGYFGCRTRDGQFDPDAFARLATDDQIKMVELKVSQGAKPGHGGVLPAAKVSEEIS
RIRGVAMDEDCISPPFHKAFSTPVEMLRFIAEMRRLSGGKPTGFKLCIGHPWEFLAIC
KAMLATGITPDFIVVDGNEGGTGAAPLEFMDHLGMPMREGVNFVHNALIGIGMRDRIK
IGAAGKVATAFDMARAMALGADWCNSARGFMFALGCIQSLSCHTDRCPTGVTTQEPSR
YRALVVTQKIDRVFNYHHATLHALAELVAAAGLDHPQEIGPHHFSQRTSSSVVVSFAQ
LYPTLRPGELLDGTDDPRFKQAWAMARAETFAAAL"
misc_feature complement(301344..302690)
/locus_tag="RPD_0262"
/note="Glutamate synthase domain 2 [Amino acid transport
and metabolism]; Region: GltB; COG0069"
/db_xref="CDD:30418"
misc_feature complement(301332..302591)
/locus_tag="RPD_0262"
/note="Glutamate synthase (GltS) FMN-binding domain. GltS
is a complex iron-sulfur flavoprotein that catalyzes the
reductive synthesis of L-glutamate from 2-oxoglutarate and
L-glutamine via intramolecular channelling of ammonia, a
reaction in the plant, yeast...; Region: GltS_FMN;
cd02808"
/db_xref="CDD:73370"
misc_feature complement(order(301506..301508,301521..301523,
301539..301541,301563..301568,301629..301631,
301635..301637,301752..301760,301860..301862,
301986..301988,302046..302048,302064..302066,
302169..302171,302220..302222,302301..302312))
/locus_tag="RPD_0262"
/note="active site"
/db_xref="CDD:73370"
misc_feature complement(order(301563..301568,301629..301631,
301635..301637,301755..301760,301860..301862,
302064..302066,302169..302171,302220..302222,
302301..302312))
/locus_tag="RPD_0262"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73370"
misc_feature complement(order(301752..301757,301986..301988,
302046..302048))
/locus_tag="RPD_0262"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73370"
misc_feature complement(order(301506..301508,301521..301523,
301539..301541))
/locus_tag="RPD_0262"
/note="3Fe-4S cluster binding site [ion binding]; other
site"
/db_xref="CDD:73370"
gene 303023..304009
/locus_tag="RPD_0263"
/db_xref="GeneID:4020721"
CDS 303023..304009
/locus_tag="RPD_0263"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567404.1"
/db_xref="GI:91974745"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:4020721"
/translation="MPQLQDFRTGKPAFYPDQAIYAEYACARLGLRFSERDGGTGLLF
AVASGTKEICFGGGRCSYYPQNNATAASLATDKYLANALLERAGVATLGGRYFFLHDR
HRALRPPGHERKDALDYLAAQGGHAFAKPLTGSRGDFARPIESAAALASYLDDVARYY
DSVLIQPYASGHEYRVFVVDGEALYTARKLPPAVIGDGVRSLRELLHEHDRALRDRGL
SGASGDDPSLDQVPAAGERRDIAGRMNLSVGGAMVMEEAGAPAIAGARAATRALGLRL
GAVDLFVDPDARDDVRVIEVNSNPAIRFLESCGRDDLIVAIWRHSLTAAGLL"
misc_feature 303239..>303670
/locus_tag="RPD_0263"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene 304010..305326
/locus_tag="RPD_0264"
/db_xref="GeneID:4020722"
CDS 304010..305326
/locus_tag="RPD_0264"
/codon_start=1
/transl_table=11
/product="FolC bifunctional protein"
/protein_id="YP_567405.1"
/db_xref="GI:91974746"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4020722"
/translation="MFDLPKYGEGICLARLAVLLDRLGVDRARLQRIAVAVCGSNGKG
STAAFTAGIGRAHGLRTGLFTSPHLYRFNERFQIDGAPIPDDALRRLLERVTKAIAEV
GEARGEQFGAFEAQFALACLYFQDNACDFAVFEAGIGGRYDPVRLLGARVSCVTSVDL
EHVALLGHSIELIASDKSDACAAGGVIVYGENCRPLRDHLAEYNRNREVAALFIGDEI
GIGSASIADARQRFDLRIEDHTYVALETSLLGPFQVNNAAIAASLFALWLRQSGTDHD
PARLDAAIRHGLRDARWPGRLETISTEPLTVIDVGHTPDGIRQALAGLRAAHGESGWI
LVLGASRDKNAAEIVAALAPSFDAIVCSSAHHKGAPAEVIAEAARAANPRAEIVTAAT
VADAVGEARMLAERLDARIYVAGGLFLAIEFAAVTRGGRAEDLRFF"
misc_feature 304046..305278
/locus_tag="RPD_0264"
/note="folylpolyglutamate synthase/dihydrofolate synthase;
Region: folC; TIGR01499"
/db_xref="CDD:200112"
misc_feature 304886..305092
/locus_tag="RPD_0264"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 305411..306409
/locus_tag="RPD_0265"
/db_xref="GeneID:4020723"
CDS 305411..306409
/locus_tag="RPD_0265"
/codon_start=1
/transl_table=11
/product="zinc-binding alcohol dehydrogenase"
/protein_id="YP_567406.1"
/db_xref="GI:91974747"
/db_xref="InterPro:IPR000585"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:4020723"
/translation="MTAVNRQVLLIAKPKEKLGPEHFRMAEAAVPEPKDGEALVKVRY
ISLDAANRAWMQGATYRAAVETDSVMPGGGIAEVVSSKAEGLSPGDIVFADTGWQDYA
ALPAKHLTKLPKVEPLTHLLSVYGIAGLTAYFGLLDVGKPVAGETVVVSAAAGSVGSI
VGQIAKIKGCRVVGIAGGRAKCDWLVNELGFDAAVDYKDGALFKALRAAAPNGIDVYF
DNVGGDILEACLPQMNLRGRIACCGAVSQYDRTPSATGPRGVPGLIVVKRLIMQGFIV
MDYMDRRDAAVAELQGWVASGRLKVQEDVIDGLENTPQALIGLLAGENRGKRMVKV"
misc_feature 305411..306406
/locus_tag="RPD_0265"
/note="Putative NADP-dependent oxidoreductases [General
function prediction only]; Region: COG2130"
/db_xref="CDD:32313"
misc_feature 305420..306400
/locus_tag="RPD_0265"
/note="Prostaglandin dehydrogenases; Region: PGDH;
cd05288"
/db_xref="CDD:176190"
misc_feature order(305555..305557,305789..305791,305801..305803,
305873..305881,305936..305941,305951..305953,
305999..306001,306068..306073,306134..306148,
306152..306154,306230..306238,306365..306370,
306374..306376,306380..306382)
/locus_tag="RPD_0265"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176190"
misc_feature order(305558..305560,306152..306154,306239..306241)
/locus_tag="RPD_0265"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176190"
misc_feature order(305567..305569,305579..305581,306116..306118,
306131..306142,306149..306151,306200..306205,
306212..306235,306242..306244)
/locus_tag="RPD_0265"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176190"
gene complement(306439..306675)
/locus_tag="RPD_0266"
/db_xref="GeneID:4020724"
CDS complement(306439..306675)
/locus_tag="RPD_0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567407.1"
/db_xref="GI:91974748"
/db_xref="GeneID:4020724"
/translation="MVSIPRGERLQIMLTEDEYHALDLWRFSRHMPSRAAAVRELLRR
GLSAEGFAVSDGTRKSSDFGLIGKSSAETDGRQP"
gene complement(307559..307635)
/locus_tag="RPD_R0006"
/note="tRNA-Arg4"
/db_xref="GeneID:4020725"
tRNA complement(307559..307635)
/locus_tag="RPD_R0006"
/product="tRNA-Arg"
/db_xref="GeneID:4020725"
gene 307917..308537
/locus_tag="RPD_0267"
/db_xref="GeneID:4020726"
CDS 307917..308537
/locus_tag="RPD_0267"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567408.1"
/db_xref="GI:91974749"
/db_xref="InterPro:IPR009282"
/db_xref="GeneID:4020726"
/translation="MQTVHTEVTMGLLDILNGMQNGPRGPADPNDKSGGMSKFTMAIL
ALLAYKAYKHVTAPDAPASVGHGRPTSVPQSPNTMPSRNTINAGMPGGGLSDMLKGGL
GGLLAGGAAGTILSGGLGDLMKQFQTNGLGDAADSWVGRGENKQIGPNDLANALGADR
LEMLTQQTGMSREELLDGLSQQLPGVIDQLTPDGRLPTEDEASRWI"
misc_feature <308277..308519
/locus_tag="RPD_0267"
/note="Bacterial protein of unknown function (DUF937);
Region: DUF937; cl01528"
/db_xref="CDD:207439"
gene 308588..308866
/locus_tag="RPD_0268"
/db_xref="GeneID:4020727"
CDS 308588..308866
/locus_tag="RPD_0268"
/codon_start=1
/transl_table=11
/product="transglycosylase-associated protein"
/protein_id="YP_567409.1"
/db_xref="GI:91974750"
/db_xref="InterPro:IPR007341"
/db_xref="GeneID:4020727"
/translation="MTGILWIILVGFIAGIIARFLSPGPNNPQGFLLTTVLGIVGAFL
ATAIGQAIGHYGPNQGAGFITATIGAVLVLFIWNRLVARRVLSDPGNR"
misc_feature 308594..308836
/locus_tag="RPD_0268"
/note="Predicted membrane protein [Function unknown];
Region: COG2261"
/db_xref="CDD:32442"
gene complement(309048..309830)
/locus_tag="RPD_0269"
/db_xref="GeneID:4020728"
CDS complement(309048..309830)
/locus_tag="RPD_0269"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_567410.1"
/db_xref="GI:91974751"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:4020728"
/translation="MAKAGLNVIVTGSASGLGAATAKILARDGARLVINYSSSQKDAE
TTAEDCRKAGAAEVVVVQGDVAKDDDCKRIVEAAAHWGGLDALINNAGITKHVAHHLL
DQLSAEDFQRIYAVNTIGPYQMVRAARALLVAGAKAAGRSSAVVNVSSVAGTSGIGSS
IAYAASKGALNTMTLSLSRALAPSIRVNAICPGYIDTPWFTKGRGADAAQQVRDMVVA
KVPLKIASSPEDIAELVCFLASPKSSSMTGELVRMDAGMHLG"
misc_feature complement(309051..309821)
/locus_tag="RPD_0269"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(309057..309809)
/locus_tag="RPD_0269"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: fabG; PRK05565"
/db_xref="CDD:180133"
misc_feature complement(order(309246..309257,309345..309347,
309357..309359,309396..309404,309555..309563,
309717..309725))
/locus_tag="RPD_0269"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(309345..309347,309357..309359,
309396..309398,309480..309482))
/locus_tag="RPD_0269"
/note="active site"
/db_xref="CDD:187535"
gene 310089..311156
/locus_tag="RPD_0270"
/db_xref="GeneID:4020729"
CDS 310089..311156
/locus_tag="RPD_0270"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase-like protein"
/protein_id="YP_567411.1"
/db_xref="GI:91974752"
/db_xref="InterPro:IPR006090"
/db_xref="InterPro:IPR013107"
/db_xref="GeneID:4020729"
/translation="MTETTDNIVVETAEKIFADLADAQTINASKDGSWRAPLWRALSE
SGLPLSWVPEACDGSGASLAEGFAVLNAAGRAGLAAPLAETMLAGWLLAQANIASPEG
AMTIAPVHPKDRITLGPDGTLSGRARGVPFARDAKFIAVLAQRSDGASVALVDASTCR
IDHGLGLGGDPSDTVTFDKVSPLKLAAAPQGFDATALLLIGSVARSLQIAGALETMLE
ISVRYSNERVAFEKKISKFQAVQHNLAKLAGETSAALAAATSAADTLANATAFDDAVM
LEAAAAKIRCAEAAEKGAAIAHQVFGAIGFTSEHILHRYSLRALAWRDDFGNESHWAV
ELGRMVARRGADDLWPLVASR"
misc_feature 310119..>310820
/locus_tag="RPD_0270"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 310377..311057
/locus_tag="RPD_0270"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
gene 311182..312342
/locus_tag="RPD_0271"
/db_xref="GeneID:4020730"
CDS 311182..312342
/locus_tag="RPD_0271"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase-like protein"
/protein_id="YP_567412.1"
/db_xref="GI:91974753"
/db_xref="InterPro:IPR006089"
/db_xref="InterPro:IPR006091"
/db_xref="GeneID:4020730"
/translation="MTAALRFDPIRLPPVCEELRREVRAFLAEEIAAGTFDPHKPQRE
DSDAPEFSRRVGARGWLGMTWPKQYGGHERTFLERYVVTEEMRVANAPTRRFFVADRQ
SGPVLLKYAPEHIKMDILPRICRGELCFAIGMSEPNSGSDLFAAKTKATKTDGGYLIN
GSKIWTTSAHIADYMIAIFRTSPSTKENRRHGLTQFLVNMKTPGIKVNPIAQITGQHE
FNEVVFTDAFVPDDHVLGEIDGAWKQATSELAFERSGPERFLETYYVLTELVRALGPD
PDTRGAEGIGRLVAQLHTMRRMSVSVAGMLQAGKEPVVEASIVKDIGTMWEQQLPHRV
RELAAFVDSEASNHATLDELTAFATKVAPKLTIQGGTTEVLRGIIARGLGLR"
misc_feature 311215..312339
/locus_tag="RPD_0271"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 311230..312333
/locus_tag="RPD_0271"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(311485..311487,311575..311577,311581..311583,
311674..311676,311680..311682,312280..312288,
312292..312294,312298..312300)
/locus_tag="RPD_0271"
/note="active site"
/db_xref="CDD:173838"
gene 312486..313292
/locus_tag="RPD_0272"
/db_xref="GeneID:4020731"
CDS 312486..313292
/locus_tag="RPD_0272"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase/isomerase"
/protein_id="YP_567413.1"
/db_xref="GI:91974754"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020731"
/translation="MTNYTDIAVETNGHVALIEIRRPPLNFFDISLIQQIADALDAID
ADPEMRATVLAAQGKAFCAGANFGDSAQQAGDPQAAKGDPADSLGQIGHLYYEAVRIF
RAKKPIVAAVHGAAIGGGLGLAVSADFRVTCPEARFAANFTKLGFHPGFGLTVTLPEL
IGRNNAELMFYTSRRVTGEDAVKMGLANELVPLNEVRSAALKLAREIAECAPLGLLST
RATMRATLADRVMEATKHELAEQTRLRATEDFREGIKATEERRIAHFKGR"
misc_feature 312504..313106
/locus_tag="RPD_0272"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature 312510..313265
/locus_tag="RPD_0272"
/note="Enoyl-CoA hydratase/isomerase family; Region: ECH;
pfam00378"
/db_xref="CDD:201191"
misc_feature order(312558..312560,312564..312566,312660..312662,
312672..312686,312828..312830,312834..312842,
312906..312911,312918..312920)
/locus_tag="RPD_0272"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature order(312678..312680,312840..312842)
/locus_tag="RPD_0272"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature order(312804..312806,312867..312878,312912..312923,
312939..312941,312945..312953,312957..312962,
312975..312980,312984..312989,312993..312998,
313005..313007,313038..313040,313047..313049,
313092..313094,313101..313106)
/locus_tag="RPD_0272"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(313355..314119)
/locus_tag="RPD_0273"
/db_xref="GeneID:4020732"
CDS complement(313355..314119)
/locus_tag="RPD_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567414.1"
/db_xref="GI:91974755"
/db_xref="GeneID:4020732"
/translation="MAPFLRLRQICLVADSLEPATSRLAAIMGLEVCYRDPHVGKYGL
ENVLLPVDATLLEIVAPTRAGTAAGRFLEKTGGHGGYMAIFCCDDPDARGRHAATLGV
RTANVIDHAPYHGVQLHPRDCRAAFIELNHTAGSDNVRGPYPPAGPDWHKAIRTEVTQ
ALTAVELQSPDPDDLAAHWGRILELPVTKGAEGVAELQVPNATLRFVKGDSEALTALT
FKVADPTKIREAAQSQGVATTGDGFTLAGVAFRLSN"
misc_feature complement(313730..314101)
/locus_tag="RPD_0273"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:211465"
misc_feature complement(order(313733..313735,313739..313741,
313886..313888,313943..313945,313949..313951,
313982..313984,314081..314083,314093..314095))
/locus_tag="RPD_0273"
/note="active site"
/db_xref="CDD:211348"
misc_feature complement(order(313733..313735,313886..313888,
314093..314095))
/locus_tag="RPD_0273"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211348"
misc_feature complement(<313397..313627)
/locus_tag="RPD_0273"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:211465"
misc_feature complement(order(313472..313474,313499..313501,
313505..313507,313538..313540,313616..313618))
/locus_tag="RPD_0273"
/note="active site"
/db_xref="CDD:211348"
gene complement(314122..314910)
/locus_tag="RPD_0274"
/db_xref="GeneID:4020733"
CDS complement(314122..314910)
/locus_tag="RPD_0274"
/EC_number="4.2.1.17"
/note="Catalyzes the reversible hydration of unsaturated
fatty acyl-CoA to beta-hydroxyacyl-CoA"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase"
/protein_id="YP_567415.1"
/db_xref="GI:91974756"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020733"
/translation="MTDIVLQQLDQGLLTITMNRPDRRNALNQELIRGLVDAARRAAD
DPEVRAVLLKGAGGTFCVGGDVKSMAAAGAPPPLEAKVANLRRGMEVSRILHQMPKPV
VAQIDGAAAGAGLSIALACDLRVVGASAKITTAFAKVGLSGDFGGTYFLTHLIGAAKA
RELYLTSPVLTAQEAHALGIVSCVVPDADVESAARELALSLAQGPSVTLGYIKTNINN
AEHLSLEACFDAEALHHSRCAETADHKEAASAFVEKRAPSFQGR"
misc_feature complement(314125..314910)
/locus_tag="RPD_0274"
/note="enoyl-CoA hydratase; Provisional; Region: PRK06688"
/db_xref="CDD:180658"
misc_feature complement(314341..314898)
/locus_tag="RPD_0274"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(314494..314496,314503..314508,
314572..314580,314584..314586,314713..314727,
314737..314739,314833..314835,314839..314841))
/locus_tag="RPD_0274"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(314572..314574,314719..314721))
/locus_tag="RPD_0274"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(314365..314367,314374..314376,
314407..314409,314416..314421,314425..314430,
314434..314439,314452..314457,314461..314469,
314473..314475,314491..314502,314536..314547,
314608..314610,314632..314634))
/locus_tag="RPD_0274"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(315107..316312)
/locus_tag="RPD_0275"
/db_xref="GeneID:4020734"
CDS complement(315107..316312)
/locus_tag="RPD_0275"
/codon_start=1
/transl_table=11
/product="putative ureA/short-chain amide ABC transporter"
/protein_id="YP_567416.1"
/db_xref="GI:91974757"
/db_xref="GeneID:4020734"
/translation="MKAIRIALFACLSITAISAAQAQSQPPLKLGAILDMSGLYADIT
GPGSEAAAKMAVEDFGGTVLGRKIEIVVADHLNKADLSANIARDMLDNQGVEAIIDVA
ASATALAAAEIAKARGKIIMFSGPGSIRLSNEACGPYTVHYVFDTFAQANTTGLAAVK
QGLDSWFFLSADYAFGQDLERDTSNVIKASGGKVLGNVKHPINTSDFSSFLLQAQSSK
AKVVGLANAGGDTINAIKQAAEFGIAKGGQKLSPLLAFISDIDSVGLDTAQGLILAEA
FYWDLNDDTRAFSKRFMERTKRVPTSVQAGLYSETMHYLQAVKAAGTTDAAAVMKKMK
ETPINDFFAKNGRIREDGRMVHDMYLFEIKKPSESKGRWDNYKLLATVPGDQAFQPLS
ESRCPLVKK"
misc_feature complement(315218..316234)
/locus_tag="RPD_0275"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature complement(315230..316228)
/locus_tag="RPD_0275"
/note="Periplasmic solute-binding domain of active
transport proteins that belong to the type I periplasmic
binding fold protein family; Region: PBP1_SBP_like_1;
cd06327"
/db_xref="CDD:107322"
misc_feature complement(order(315551..315553,315632..315634,
315788..315790,315932..315940,316001..316009))
/locus_tag="RPD_0275"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107322"
gene 316528..317322
/locus_tag="RPD_0276"
/db_xref="GeneID:4020735"
CDS 316528..317322
/locus_tag="RPD_0276"
/codon_start=1
/transl_table=11
/product="nuclease"
/protein_id="YP_567417.1"
/db_xref="GI:91974758"
/db_xref="InterPro:IPR006021"
/db_xref="GeneID:4020735"
/translation="MTATTNNARARGRLAAMISGGVLLFVPGVLFAGCPDLPRQGEGV
VAAIDDGRSLRLQDGREIRLAGIELELSRQAEAKAALASLASGRVITLRGVDDAPDRY
GRQPAFVFTDDETRPLQSRLLDAGHALVGTGIAQADCRGELLAAESSARIARRGLWAA
PSALKNAGNPGDIMSRVGRFTVIEGRVLSVREAGGTIYLNFGRRWTRDFAVTISRRIL
GSFEAAGIAPKSLENKRIRVRGWVERRSGPQIRIREVGQIEVPGAP"
misc_feature <316825..317004
/locus_tag="RPD_0276"
/note="Staphylococcal nuclease homologues. SNase
homologues are found in bacteria, archaea, and eukaryotes.
They contain no disufide bonds; Region: SNc; cl00140"
/db_xref="CDD:206856"
gene 317343..318836
/locus_tag="RPD_0277"
/db_xref="GeneID:4020736"
CDS 317343..318836
/locus_tag="RPD_0277"
/codon_start=1
/transl_table=11
/product="peptidase M48, Ste24p"
/protein_id="YP_567418.1"
/db_xref="GI:91974759"
/db_xref="InterPro:IPR001915"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:4020736"
/translation="MIGSEGRRSIWRSRHWLAVPLLGSALALAGCGDFRRFETASAPA
SAPAVKPARPAAQSPTAEREHERILATYGGAYDDPRLEALIGSTVNRLVAASDRPDLT
YKVTILNSGAVNAFALPTGQLYVTRGLVALASDTSELSSVLSHEMAHVLAKHAAIRED
QARQAALVTRVVTDMGNDPDMTALALAKTKLSLASFSRQQELEADGIGVGISARAQFD
PYGASRFLTAMERNAALKASRGDPRSQDFLSSHPATPERVRNAQNNARQYASPEQNAK
GERDRETYLNAIDNLVYGEDPSEGFVRGRRFLHPKLGFTFQVPETFTLDNTAQAVIGV
REGGSQAMRFDVVRVPAEQSLGDYLNSGWMENVDKSSTEELSISGFPTASVMARGDQW
QFKVYALRFGSDVYRFIFATRQKSAESERNARDTVNSFRRLTLDEIQAARPLRIKVIT
VQPGDTVESLSHRMAGVDRPLERFRVLNGLDASATVKPRDLVKIVVD"
misc_feature 317523..318833
/locus_tag="RPD_0277"
/note="Putative Zn-dependent protease [General function
prediction only]; Region: COG4784"
/db_xref="CDD:34395"
misc_feature 317571..318122
/locus_tag="RPD_0277"
/note="Peptidase family M48; Region: Peptidase_M48;
pfam01435"
/db_xref="CDD:201797"
gene complement(319035..320333)
/locus_tag="RPD_0278"
/db_xref="GeneID:4020737"
CDS complement(319035..320333)
/locus_tag="RPD_0278"
/codon_start=1
/transl_table=11
/product="transcription factor CarD"
/protein_id="YP_567419.1"
/db_xref="GI:91974760"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR003711"
/db_xref="GeneID:4020737"
/translation="MCYIWHILETRHAVFAAGKGSRQKQRTGAWRFHAQAVSQKTRKM
SVSSKRAKHAAAANRSATKSQSRISAKDTRSVKSPASKASGSKASSSKSPVSKASATK
ASATKAVGSKSSVSKASASKASTSKASAGKAAAAKVTAGKASAAKVTTAKGSAAKASA
SKASALKSSKNKRSEMPSKTAKTAAPADASKTASAKSTAKPVAKAPEAPKAAVAKPEG
KPVAAKPAAPPKVEEPKKAVTQRQGFKAGEFVVYPAHGVGQILAIEEQEIAGAKLELF
VINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYE
AKINSGDIVAIAEVVRDLFRSESQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAV
KEVEGQLAKSPRRGAKAEVDAEGDADGDVDTDDAVTDEAA"
misc_feature complement(319131..319616)
/locus_tag="RPD_0278"
/note="Transcriptional regulators, similar to M. xanthus
CarD [Transcription]; Region: COG1329"
/db_xref="CDD:31520"
gene complement(320466..320804)
/locus_tag="RPD_0279"
/db_xref="GeneID:4020738"
CDS complement(320466..320804)
/locus_tag="RPD_0279"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_567420.1"
/db_xref="GI:91974761"
/db_xref="InterPro:IPR000813"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4020738"
/translation="MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCG
VCEPECPADAIKPDTEPGLEKWLELNTEYAKSWPNLTQKKEAPGDAKQYEGMEGKFEK
FFSPEPGTGD"
misc_feature complement(320610..320795)
/locus_tag="RPD_0279"
/note="Ferredoxin [Energy production and conversion];
Region: COG1146"
/db_xref="CDD:31341"
misc_feature complement(320637..320708)
/locus_tag="RPD_0279"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
misc_feature complement(320496..320615)
/locus_tag="RPD_0279"
/note="Domain of unknown function (DUF3470); Region:
DUF3470; pfam11953"
/db_xref="CDD:204794"
gene complement(320879..321148)
/locus_tag="RPD_0280"
/db_xref="GeneID:4020739"
CDS complement(320879..321148)
/locus_tag="RPD_0280"
/codon_start=1
/transl_table=11
/product="RNA-binding S4"
/protein_id="YP_567421.1"
/db_xref="GI:91974762"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:4020739"
/translation="MERQRLDKWLWHARVVRARSAAAALVESGHVRINGAREKSPGHA
IKAGDVVTIALDRGVRVLKVVGFTERRGDAASVTGLYADLSVPRD"
misc_feature complement(<320990..321139)
/locus_tag="RPD_0280"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(321011..321013,321017..321040,
321059..321061,321065..321070,321077..321082,
321086..321091,321095..321100,321134..321136))
/locus_tag="RPD_0280"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene complement(321188..324547)
/locus_tag="RPD_0281"
/db_xref="GeneID:4020740"
CDS complement(321188..324547)
/locus_tag="RPD_0281"
/codon_start=1
/transl_table=11
/product="helicase-like protein"
/protein_id="YP_567422.1"
/db_xref="GI:91974763"
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="GeneID:4020740"
/translation="MPRSFSAPFTNDRAPGAGVTAVLGPTNTGKTHLAIERMVAHPSG
LIGLPLRLLAREVYNKIVDRVGPDAVALVTGEEKIKPPKARFWVSTVEAMPRDLDVSF
LAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMRPIIERLLPGASIVTRPRL
SQLEFAGDRKLTRQPRRTAIVAFSADEVYAIAELIKRQHGGAAVVLGSLSPRTRNAQV
AMFQSGDVDYLVATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLNPSEFAQIAGRAGR
ATRDGTFGTTGRCAPFEPELVNALQNHTFDAVKTLQWRNSELDFASIAALQVSLAETP
RHDALTRAPAAEDLRVLDHAARDGDVRDMAHGAAAVERLWEVCQVPDYRKIAPAAHAE
LVTTLYRFLMQKGRIPDDWFGAQVEQADRIDGGIDTLSARIAQIRTWTFVANRVDWLA
DPEHWQGISRDIENKLSDALHERLTERFVDRRTSVLMRRLRENTMLNTEIGKTGEVIV
EGHVIGRLDGFTFAPDAAEAGSDAKALQATAQKALAGEIDSRAEKLSGAPDEQFLLTS
DGTVRWTGDAVGRLVGSDEVLRPRLRIIADDRLAGASREAVQTRLDLWLKTHIEKILG
PLFELSKAEDITGIGRGIAFQLIESLGVIERAKIAAEMKDLDQPSRATLRKYGVRFGA
YHIYVPSLLKPAARALASLLWAQKLDDVDMSALSSAQHLASSGRTSFPADKALDRDAY
RTLGYRLCGERAVRVDILERLADLIRPALAWREGAQGEKPAGAFDGRSFVVTQSMTSL
TGSAGEDFASILRALGYRMEKRPALPPSTTAPAKLPDAAPEAPSADSAETGLSAEDHA
ILAGAIAFEPAVAAETDDVADLTNDAPQPVAASEQAAPEPAADASESSPVESQPDSAA
VPEAELAATDTAQEATAEAAASDAPAVDATTDNTDGAAPAVESAAPAQPEMVEVWRPG
GRSDEHRARPDRNRQRHRPPQAGQAAAPEGEAGEAKRGDRPDRGGRRGDRKGADVRRD
RREGEGQGAPRSEAAGEGRPSRERFKGRDKSQDKFKGGPKGGRDNQGGGSHRQVHSSA
PPRERDRPIDPNSPFAKLAALKEQLSAGRKD"
misc_feature complement(<323702..324487)
/locus_tag="RPD_0281"
/note="Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis]; Region:
SrmB; COG0513"
/db_xref="CDD:30859"
misc_feature complement(324104..324484)
/locus_tag="RPD_0281"
/note="DEAD/DEAH box helicase; Region: DEAD; pfam00270"
/db_xref="CDD:201124"
misc_feature complement(324455..324469)
/locus_tag="RPD_0281"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(324221..324232)
/locus_tag="RPD_0281"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(323702..324043)
/locus_tag="RPD_0281"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(323846..323854,323927..323932,
323990..324001))
/locus_tag="RPD_0281"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(323720..323722,323729..323731,
323741..323743,323828..323830))
/locus_tag="RPD_0281"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(324975..325856)
/locus_tag="RPD_0282"
/db_xref="GeneID:4020741"
CDS complement(324975..325856)
/locus_tag="RPD_0282"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567423.1"
/db_xref="GI:91974764"
/db_xref="GeneID:4020741"
/translation="MNIPVSRPSRRQAHASLMPGLIAGLLTIGLASIAPLDRAAAQGK
LDARYEATLAGIEVGKGGWVIEITDDGYAAAANGATSGVLQAFSRGNGSGEAQGRLVN
GQFSPMNYMATTTSAKKTETIRITLANGNVKESSIEPEQPHDADRIPVTEAHRRGVVD
PMTGSILRVPGVGDLISPDSCRVSTPIFDGRMRYDLRMDYKRIETVKAEKGYQGPVLV
CGIYFTPVSGYIPDRAAIKYLVEQRGMEVWLAPIAGTRMLVPFRLKIPTPLGNAVLQA
TQFVTKATPPKSVSRTQ"
misc_feature complement(325020..325742)
/locus_tag="RPD_0282"
/note="Protein of unknown function (DUF3108); Region:
DUF3108; pfam11306"
/db_xref="CDD:204623"
gene 326169..326474
/gene="rpmB"
/locus_tag="RPD_0283"
/db_xref="GeneID:4020742"
CDS 326169..326474
/gene="rpmB"
/locus_tag="RPD_0283"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_567424.1"
/db_xref="GI:91974765"
/db_xref="InterPro:IPR001383"
/db_xref="GeneID:4020742"
/translation="MSRRCELTAKGVQTGHKVSHSNIKTKRRFLPNLVNVTFLSDALG
RPVRLRVSTNALKSVDHRGGLDAFLAKASIAELSPKAAELKRAIAKKKAGEPAAAAS"
misc_feature 326169..326399
/gene="rpmB"
/locus_tag="RPD_0283"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene 326692..330009
/locus_tag="RPD_0284"
/db_xref="GeneID:4020743"
CDS 326692..330009
/locus_tag="RPD_0284"
/codon_start=1
/transl_table=11
/product="multi-sensor hybrid histidine kinase"
/protein_id="YP_567425.1"
/db_xref="GI:91974766"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020743"
/translation="MNRPIGQNNYAPDTAPDLDSLGPRCPRIEAGAMKLSTRLTLAMV
ALVLVTTAVLGFLNYRSIVELVMPRALKQLQTHAQLNALLMDAHLRGARADAVGAQAS
STLRDLLLSRLKTTETPGEPAPEWRRRIEARFAAELVAKPTYAILRIIGPEDGGRELV
RVDRLGPNGGIRAVPVSQLTRRGDRSYVREGLALPRNEVAVSKIELNRNETGLEIPYV
ATMRTMAPIDAPDGTRLGVLVINTNLSENLERVRDSVTRGNLIYIVNAAGDYLLHPDR
SREFGFDRGTPSRIQDDFPAFAALLDGKDEAPRVMESSTGQRFGVGWDWVRLADGPRV
GVIEMRSYASLTSVPRAVRDATLTGGAAAILVAMLMAVPLARSLTRPLVRITRSVQAF
ARGEKFELTPGGSQEINLLADAFSQMTHEANRKAIALAAEVEERTRIAGVLQNTIDIM
VDPVLVVDARGTVILTNPAACEMFGSLAGISILNTTRSFDRFSPDGKPLTPDKSALLR
AFLGETIENFEFIVQPIGSARRSYLTANGRPLRGETGQIQGAVMVYHDITKTKKAEEA
LRRSEQMARAIVDTALDAFVQVDALGTITEWSPHAELVLGWRRSEAIGRNVFQLLIPA
DQLERRTEEFKRFASSLGRDSSGFRVEIEVLHQDGTPTPIEVAMTALYRDGSFVINAF
LRNLTEQIAFEEQLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQPHL
ATIAKLISEAADRGAELTRLLLAFARKQPLRPDETDVNALVAGLQSLLRPTLGEQIEI
ETSFDDGAWPIYVDRGQLESALVNLAVNARDAMPNGGKLTIETCNIVVDQELAKRFGN
VESGSYVMIAISDSGCGIPDAIRGKVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHI
TLYSEVGLGTTFRLYLPRASTENEREAATSSEQGAVGGTETILVVEDDAMVRSYVNAQ
LKSLGYTALSVGNATAALSISDSGAEFDLLFTDVVMPGPYNGVQLAAEMSKRRPGLKV
LFTSGYSENALIYNDRLDPDILLLSKPYRRADLARMIRLALNSTVESEVIQNAADEHL
KNERVDDNVERSSVRPL"
misc_feature 327817..327963
/locus_tag="RPD_0284"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature 328039..328362
/locus_tag="RPD_0284"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature 328051..328368
/locus_tag="RPD_0284"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature order(328087..328089,328099..328101,328117..328119,
328144..328155,328255..328257,328273..328275)
/locus_tag="RPD_0284"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(328135..328137,328147..328149,328171..328173,
328204..328209,328294..328296,328300..328302)
/locus_tag="RPD_0284"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 328399..329484
/locus_tag="RPD_0284"
/note="Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms]; Region: NtrB;
COG3852"
/db_xref="CDD:33642"
misc_feature 328438..328731
/locus_tag="RPD_0284"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(328480..328482,328492..328494,328510..328512,
328549..328560,328651..328653,328666..328668)
/locus_tag="RPD_0284"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(328540..328542,328552..328554,328591..328593,
328600..328605,328687..328689,328693..328695)
/locus_tag="RPD_0284"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 328795..328989
/locus_tag="RPD_0284"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(328813..328815,328825..328827,328837..328839,
328846..328848,328858..328860,328867..328869,
328918..328920,328930..328932,328939..328941,
328951..328953,328960..328962,328972..328974)
/locus_tag="RPD_0284"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 328831..328833
/locus_tag="RPD_0284"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 329137..329481
/locus_tag="RPD_0284"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(329155..329157,329167..329169,329176..329178,
329290..329292,329296..329298,329302..329304,
329308..329313,329380..329391,329437..329439,
329443..329445,329458..329463,329467..329469)
/locus_tag="RPD_0284"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 329167..329169
/locus_tag="RPD_0284"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(329302..329304,329308..329310,329380..329382,
329386..329388)
/locus_tag="RPD_0284"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 329554..329922
/locus_tag="RPD_0284"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature 329560..329904
/locus_tag="RPD_0284"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(329569..329574,329704..329706,329731..329733,
329791..329793,329848..329850,329857..329862)
/locus_tag="RPD_0284"
/note="active site"
/db_xref="CDD:29071"
misc_feature 329704..329706
/locus_tag="RPD_0284"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(329713..329718,329725..329733)
/locus_tag="RPD_0284"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 329857..329865
/locus_tag="RPD_0284"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(330097..331176)
/locus_tag="RPD_0285"
/db_xref="GeneID:4020744"
CDS complement(330097..331176)
/locus_tag="RPD_0285"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567426.1"
/db_xref="GI:91974767"
/db_xref="GeneID:4020744"
/translation="MTTGDGGAAAGRLLSRRRVVALAAGLAFAAHPALAQSQAQRFDP
EEFSTPAPERIEVRARPIESFDLRDRASRRFGALQFRSGLVLTSPFRGFGGLSGLKLD
PKGERFVAINDRGAWITGRIVYSGAEMTGLADVEAAPLLGPDGQPLTRRKWYDSESLA
FDGGTAYVGFERVNQIVKFDFGRDGVRALGQPIAVPPALRKLPNNKGIESLVAVPKGQ
PLAGTLIAISERGLDADRNVIGFLIGGKTPGQFAVRRTEDFDISDAMLLPSGQLLILE
RKFSWIHGVHIRIRRIALSTLTPGAIVDGPALFNADLGHEIDNMEGIDAHLDASGATV
LTLVSDDNFSMLQRTLLLQFTLVED"
misc_feature complement(330100..331035)
/locus_tag="RPD_0285"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4246"
/db_xref="CDD:33969"
misc_feature complement(330109..330960)
/locus_tag="RPD_0285"
/note="Esterase-like activity of phytase; Region:
Phytase-like; pfam13449"
/db_xref="CDD:205627"
gene complement(331173..333068)
/locus_tag="RPD_0286"
/db_xref="GeneID:4020745"
CDS complement(331173..333068)
/locus_tag="RPD_0286"
/EC_number="6.6.1.2"
/codon_start=1
/transl_table=11
/product="cobalt chelatase, pCobT subunit"
/protein_id="YP_567427.1"
/db_xref="GI:91974768"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR006538"
/db_xref="GeneID:4020745"
/translation="MTTNSKFRTGSKEAPTEPFKRAVTSCLRAIAKSPELEVTFAAER
PGLAPGKARLPEPARKMSKRDAAIVRGHADSIALKLACHDPKVHRKLMPGNPQARGVF
EAVEQARVEALGARRMAGVAKNLTAMLDDHFHRGKFDEITERADAPLADALAMLVRER
LTGLAPPPAARKLVDLWRPVLDDKIGPRLDQLERFAENQSKFGDAIHDLLEALELGDD
RDTESEEDENQDDKQEGENDQSGAEGTPESEAAQEMSAEQAEATSDEMSDSAMESAQA
SASDTFDDSEVGEDDTPGEATRPNNRGANEPRGPEYHAFAPKFDEVIAAEDLCDHDEL
ERLRSYLDKQLAHLQGIVARLANRLQRRLMAQQNRAWDFDLEEGILDPARLSRVVTDP
FHPLSFMSEKEATFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEIL
GFTTRAWKGGQSREAWLAAGKPATPGRLNDLRHIIYKSADAPWRRARKNLGLMMREGL
LKENIDGEALDWAHKRLLGRSEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRHIIE
EIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAITEKLAELFSETADAPAGPG
RRRRLHS"
misc_feature complement(332211..333047)
/locus_tag="RPD_0286"
/note="Cobalamin biosynthesis protein CobT; Region: CobT;
pfam06213"
/db_xref="CDD:148051"
misc_feature complement(331224..333020)
/locus_tag="RPD_0286"
/note="cobaltochelatase, CobT subunit; Region: CobT;
TIGR01651"
/db_xref="CDD:130712"
misc_feature complement(331230..331844)
/locus_tag="RPD_0286"
/note="norD type: Denitrifying bacteria contain both
membrane bound and periplasmic nitrate reductases.
Denitrification plays a major role in completing the
nitrogen cycle by converting nitrate or nitrite to
nitrogen gas. The pathway for microbial...; Region:
vWA_norD_type; cd01454"
/db_xref="CDD:29227"
misc_feature complement(order(331449..331451,331533..331535,
331809..331811,331815..331817,331821..331823))
/locus_tag="RPD_0286"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29227"
gene complement(333223..334218)
/locus_tag="RPD_0287"
/db_xref="GeneID:4020746"
CDS complement(333223..334218)
/locus_tag="RPD_0287"
/EC_number="6.6.1.2"
/codon_start=1
/transl_table=11
/product="cobalt chelatase, pCobS small subunit"
/protein_id="YP_567428.1"
/db_xref="GI:91974769"
/db_xref="InterPro:IPR006537"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4020746"
/translation="MTAATTRAQEITGLPDMKVSVRQVFGIDSDLEVPAFSEADPHVP
DVDSDYRFDRATTLAILAGFARNRRVMVTGFHGTGKSTHIEQVAARLNWPCVRVNLDS
HISRIDLVGKDSIVVRDGKQVTEFRDGILPWALQHNVALVFDEYDAGRPDVMFVIQRV
LEVSGRLTLLDQNKVIKPHPAFRLFSTANTIGLGDTSGLYHGTQQINQGQMDRWSIVT
TLNYLPHDEEVEIVLAKARHYRNAEGREIVNKMVRLADLTRNAFANGDLSTVMSPRTV
ITWSENAEIFGDIGFAFRVTFLNKCDELERPLVAEFYQRCFNAELPESSVNVAMS"
misc_feature complement(334090..334197)
/locus_tag="RPD_0287"
/note="Cobaltochelatase CobS subunit N terminal; Region:
CobS_N; pfam12556"
/db_xref="CDD:152990"
misc_feature complement(333235..334188)
/locus_tag="RPD_0287"
/note="cobaltochelatase, CobS subunit; Region: PD_CobS;
TIGR01650"
/db_xref="CDD:130711"
misc_feature complement(333637..334011)
/locus_tag="RPD_0287"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 334517..334657
/locus_tag="RPD_0288"
/pseudo
/db_xref="GeneID:4020747"
gene 334720..334860
/locus_tag="RPD_0289"
/pseudo
/db_xref="GeneID:4020748"
gene complement(334887..335534)
/locus_tag="RPD_0290"
/db_xref="GeneID:4020749"
CDS complement(334887..335534)
/locus_tag="RPD_0290"
/codon_start=1
/transl_table=11
/product="heat shock protein DnaJ-like"
/protein_id="YP_567429.1"
/db_xref="GI:91974770"
/db_xref="InterPro:IPR001623"
/db_xref="GeneID:4020749"
/translation="MAIDSSKFFDKIRVKPTKAEAAREAAREQVIMCDAPGCANRGAH
RAPKGRGLEKDYWHFCLNHVREYNQGYNFFEGMNADAVARYQKDALTGHRPTWKMGQN
GAKSRTKNPEDLAGAADPFEVINEFNGRSRWRRGPDPSAEQTKSEPRKVFNAERKALQ
VMGLDGDATLDIVKAKYKALVKQHHPDANGGDRSTEDRLIEIIKAYNYLKTVVRA"
misc_feature complement(334905..335057)
/locus_tag="RPD_0290"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(334923..334928,334935..334940,
334947..334949,334974..334982))
/locus_tag="RPD_0290"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene 335604..335909
/locus_tag="RPD_0291"
/db_xref="GeneID:4020750"
CDS 335604..335909
/locus_tag="RPD_0291"
/codon_start=1
/transl_table=11
/product="BolA-like protein"
/protein_id="YP_567430.1"
/db_xref="GI:91974771"
/db_xref="InterPro:IPR002634"
/db_xref="GeneID:4020750"
/translation="MQRDRKRTNGRDMGVKDTLTQKLREAFTPESLDVIDESNLHEGH
AGHSGRGESHFRVNIVSDAFAGKSRIDRHRMINELLAAELKGGLHALAVKAKAPGEA"
misc_feature 335664..335903
/locus_tag="RPD_0291"
/note="BolA-like protein; Region: BolA; pfam01722"
/db_xref="CDD:201935"
gene complement(335951..337273)
/locus_tag="RPD_0292"
/db_xref="GeneID:4020751"
CDS complement(335951..337273)
/locus_tag="RPD_0292"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567431.1"
/db_xref="GI:91974772"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR002550"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:4020751"
/translation="MDWLTFGIVIACLFGSAFFSASETALTAASRANMMRLAKQGSRN
AGIVGRLLAVRERMIGALLLGNNIFNIGASALATGLFTAWFGELGVLYATAVMTVLVV
IFAEVLPKTIAINAPDRFALLVAKPMRAMVLVLGPLLTVIEALVRVLMRLMGVKVGAH
QSLLTATERLRGAVELIHHEGGVAKHDRDMFGGLLDLSELQVSDVMVHRTEMVMVNAD
LPPEELVREVLATEYTRIPLWREKPENIIGVLHAKDLLRAMRAAEGDASNIDVTKIAL
PPWFVPEMRLVSEQLKAFRSRKTHFALVVDEYGEVEGMVTLEDILEEIVGDISDEHDI
VVAGVRTQPDGSVVVDGSVPIRDLNRAMDWNLPDEEATTIAGLVIHEARSIPDRGQSF
TFHGFRFRVLRRERNRITALRIVPVPRETEAEAADKKKGKIARIGPVP"
misc_feature complement(336008..337267)
/locus_tag="RPD_0292"
/note="Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism]; Region: CorB; COG4536"
/db_xref="CDD:34183"
misc_feature complement(336713..337258)
/locus_tag="RPD_0292"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:201879"
misc_feature complement(336305..336646)
/locus_tag="RPD_0292"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(336023..336256)
/locus_tag="RPD_0292"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(337288..338436)
/gene="aroB"
/locus_tag="RPD_0293"
/db_xref="GeneID:4020752"
CDS complement(337288..338436)
/gene="aroB"
/locus_tag="RPD_0293"
/note="catalyzes the formation of 3-dehydroquinate from
3-deoxy-arabino-heptulonate 7-phosphate; functions in
aromatic amino acid biosynthesis"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_567432.1"
/db_xref="GI:91974773"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR002658"
/db_xref="GeneID:4020752"
/translation="MTAPLNHSAPITVDVALGDRAYDIVIGRDVLGTLGERIAKLRPG
ARTAIVTDRTVAQHWLAQAEAVLDKAGVAHQRIVVGEGESSKTYAGLEQVAEALIAAK
IERNDLVIALGGGVVGDLAGFASAIVRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQG
KNLLGAFHQPVLVIADTAVLDTLSPRQFRAGYAEVAKYGALGDEAFFAWLEANHAEIV
SGGPAREHAIATSCRAKAAIVARDERENGERALLNLGHTFGHALEAATGFSDRLFHGE
GVAIGMVLAAQFSAERGMMPEADALRLQHHLAEVGLPTRLQDIAGFAQEGLADADALL
ALMTQDKKVKRGQLTFILMEGIGRAVIANDVEPAPVRDFLARQLARAS"
misc_feature complement(337315..338373)
/gene="aroB"
/locus_tag="RPD_0293"
/note="Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis; Region: DHQS; cd08195"
/db_xref="CDD:173954"
misc_feature complement(order(337615..337617,337657..337659,
337669..337671,337843..337845,337855..337857,
337876..337878,337900..337902,337945..337947,
337954..337956,338011..338013,338017..338022,
338071..338073,338080..338082,338089..338097,
338281..338283))
/gene="aroB"
/locus_tag="RPD_0293"
/note="active site"
/db_xref="CDD:173954"
misc_feature complement(order(337936..337953,337978..337983,
338047..338055,338059..338061,338068..338070,
338149..338154,338173..338175))
/gene="aroB"
/locus_tag="RPD_0293"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173954"
misc_feature complement(order(337615..337617,337669..337671,
337855..337857))
/gene="aroB"
/locus_tag="RPD_0293"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173954"
gene complement(338433..339047)
/locus_tag="RPD_0294"
/db_xref="GeneID:4020753"
CDS complement(338433..339047)
/locus_tag="RPD_0294"
/EC_number="2.7.1.71"
/note="catalyzes the formation of shikimate 3-phosphate
from shikimate in aromatic amino acid biosynthesis"
/codon_start=1
/transl_table=11
/product="shikimate kinase"
/protein_id="YP_567433.1"
/db_xref="GI:91974774"
/db_xref="InterPro:IPR000623"
/db_xref="GeneID:4020753"
/translation="MSEIAPPADAARSQEAEIVAALGERAVVLIGMMGAGKSTVGRRL
ALRLGLPFLDADTEIESAAAMTIPEIFDTHGEPHFRDGEARVIARLLDGGAKVLATGG
GAFMREETRDRIRDKAVSLWLEADADVILRRVKRRADRPLLKTPDPAGTIARLIDERY
PVYRSADLTIASRDVPHEKIVDECVAALHGYLCCAAAPTLSETP"
misc_feature complement(338454..339005)
/locus_tag="RPD_0294"
/note="shikimate kinase; Provisional; Region: PRK13946"
/db_xref="CDD:184411"
misc_feature complement(338514..338969)
/locus_tag="RPD_0294"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:30188"
misc_feature complement(order(338517..338519,338628..338630,
338649..338651,338931..338948))
/locus_tag="RPD_0294"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:30188"
misc_feature complement(order(338880..338882,338886..338888,
338934..338936))
/locus_tag="RPD_0294"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:30188"
misc_feature complement(order(338571..338573,338739..338747,
338799..338801,338808..338810,338880..338882))
/locus_tag="RPD_0294"
/note="putative shikimate binding site; other site"
/db_xref="CDD:30188"
gene 339225..339371
/locus_tag="RPD_0295"
/db_xref="GeneID:4020754"
CDS 339225..339371
/locus_tag="RPD_0295"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567434.1"
/db_xref="GI:91974775"
/db_xref="GeneID:4020754"
/translation="MPTLFRFLSVVAVIGGIIYGTIFALANFVSPKSREMTVVVPADK
FLKK"
gene 339389..340444
/locus_tag="RPD_0296"
/db_xref="GeneID:4020755"
CDS 339389..340444
/locus_tag="RPD_0296"
/codon_start=1
/transl_table=11
/product="tyrosine recombinase XerD"
/protein_id="YP_567435.1"
/db_xref="GI:91974776"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR004107"
/db_xref="InterPro:IPR011932"
/db_xref="GeneID:4020755"
/translation="MRRPRSNPSSSVQSSVQALAAEPANRETAPLRPASYSDAGLSEL
FLDMIAAEQGASANTIDAYRRDLADLSHYLTRSRKSIASADTEALRGYLADLDARGFK
SSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGYAR
QQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGKGDKE
RLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHFAR
DLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVV
EDRLKSLVRDLHPLAEG"
misc_feature 339500..340435
/locus_tag="RPD_0296"
/note="site-specific tyrosine recombinase XerD; Reviewed;
Region: xerD; PRK00283"
/db_xref="CDD:178959"
misc_feature 339515..340405
/locus_tag="RPD_0296"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature order(339956..339961,340028..340030,340265..340273,
340376..340378)
/locus_tag="RPD_0296"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
misc_feature order(339956..339958,340028..340030,340271..340273,
340280..340282,340349..340351,340376..340378)
/locus_tag="RPD_0296"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature order(339956..339958,340271..340273,340280..340282,
340349..340351,340376..340378)
/locus_tag="RPD_0296"
/note="active site"
/db_xref="CDD:29495"
gene 340595..341569
/locus_tag="RPD_0297"
/db_xref="GeneID:4020756"
CDS 340595..341569
/locus_tag="RPD_0297"
/EC_number="6.4.1.2"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer composed of two alpha (AccA)
and two beta (AccD) subunits; one of the two catalytic
subunits that can form the acetyl CoA carboxylase enzyme
together with a carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyltransferase
subunit alpha"
/protein_id="YP_567436.1"
/db_xref="GI:91974777"
/db_xref="InterPro:IPR001095"
/db_xref="InterPro:IPR011763"
/db_xref="GeneID:4020756"
/translation="MSLVMSEPMRSYLDFEKPVAELDSKIDELRTLAASGSDIHEEVS
RIEEKAAQALNELYAALTPWQKTQVARHPQRPHCVDYIQGLITEFTPLAGDRKFGEDE
ALIGGFGRFRGESICVLGQEKGSSTETRLKHNFGMARPEGYRKAVRLMEMADRFGIPV
LSLVDTAGAYPGIGAEERGQAEAIARSTDACLQLGVPNVAVVIGEGGSGGAIAIATAN
KVLMLEHAIYSVISPEAASSILWRDGTKAQEAANSMKITAQDLLRFGVIDQILAEPKG
GAHRDPEAMIATTGDAIAAAFAELNGLDSSTVRNKRRQKFLEIGRKLG"
misc_feature 340616..341563
/locus_tag="RPD_0297"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:180223"
misc_feature 340631..341566
/locus_tag="RPD_0297"
/note="acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional; Region: accA; CHL00198"
/db_xref="CDD:164574"
gene 341987..343450
/locus_tag="RPD_0298"
/db_xref="GeneID:4020757"
CDS 341987..343450
/locus_tag="RPD_0298"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567437.1"
/db_xref="GI:91974778"
/db_xref="InterPro:IPR010355"
/db_xref="GeneID:4020757"
/translation="MTRTPLLRALLASAAIAASSLLAGCNSDQMSLATNAKANQPVPP
KLVAEMQAKNMDLQSPILVRLFKQEAELEVWKQDRTGVFALLKSYPICRWSGDLGPKV
REGDRQAPEGFYAISPGQMNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRG
CYAMTDEQIAEIYSLGRESFFGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWKMLKE
GYDHFEVTRQEPKVDFCEHKYVFDAAPPPGSSKPLAFNASAKCPAYSVPADIADAVRE
KDQKDQTKLAELISKGTPVARLRTGIDGGMHQVFAAKIPDGSTGLSEVDDSSSVALAS
FDRAPGTIPPTVNPPRRPSDDLLQKATETTSVAAAPATSTSNPPARVASASKDDIGGL
LSGLSRRGGSGEITSSTAPTQATARRNEPTPAPPRPHATVPKSADTKQAAAKPQLKPA
VELNGATAAKPTTTGTISGAAPVVSSNNFEGRFSAFR"
misc_feature 342074..342868
/locus_tag="RPD_0298"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3034"
/db_xref="CDD:32849"
gene complement(343844..346684)
/locus_tag="RPD_0299"
/gene_synonym="azi; div"
/db_xref="GeneID:4020758"
CDS complement(343844..346684)
/locus_tag="RPD_0299"
/gene_synonym="azi; div"
/note="functions in protein export; can interact with
acidic membrane phospholipids and the SecYEG protein
complex; binds to preproteins; binds to ATP and undergoes
a conformational change to promote membrane insertion of
SecA/bound preprotein; ATP hydrolysis appears to drive
release of the preprotein from SecA and deinsertion of
SecA from the membrane; additional proteins SecD/F/YajC
aid SecA recycling; exists in an equilibrium between
monomers and dimers; may possibly form higher order
oligomers; proteins in this cluster correspond SecA1;
SecA2 is not essential and seems to play a role in
secretion of a subset of proteins"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecA"
/protein_id="YP_567438.1"
/db_xref="GI:91974779"
/db_xref="InterPro:IPR000185"
/db_xref="InterPro:IPR004027"
/db_xref="InterPro:IPR011115"
/db_xref="InterPro:IPR011116"
/db_xref="InterPro:IPR011130"
/db_xref="GeneID:4020758"
/translation="MIGAFARKLFGSSNDRRIKAYQARVAAINALEPDVAALSDEALR
ARTDQFRAELAAGKTLDDLLIPAFATVREAAKRTLGQRHFDVQLIGGMVLHEGDIAEM
KTGEGKTLVATLACYLNALAGKGVHVVTVNDYLASRDAGWMGQIYAFLGMSTGVIVHG
LDDSQRQKAYACDITYGTNNEYGFDYLRDNMKYRLEDMAQRGHFFAIVDEVDSILIDE
ARTPLIISGPLDDRSEFYNTIDTFIPRLDKSDYDVDEKQRSVALTEAGMEKIETLLRD
AGQLKGESLYDIENVSVVHHINQALRAHTLFQRDKDYIVRNDEVVIIDEFTGRMMQGR
RYSEGLHQALEAKEHVTVQPENQTLASITFQNYFRMYGKLAGMTGTAATEADEFYDIY
KLEVVEIPTNVTIARLDEDDEVYRTQTEKYAAILAEVERANKRLQPVLVGTASIEKSE
VLADVLLKSGYKQIDFGDPKALEKLYAAARAGKPAKLFAVLNARFHEQEAYIVAEAGV
PGAITIATNMAGRGTDIKLGGSLEMRIQQETADITDEAEKAARIEQIKADIERFRQIV
LNAEDEVEIEPAKGNKPAKTAKRPGGLYIIGSERHESRRIDNQLRGRSGRQGDPGRSK
FFLSLEDDLMRIFGSGKLDTMLTRLGLKEGEAIIHPWINKALEKAQQKVEARNFDIRK
NLLKFDDVQNDQRKVIFDQRIELMKEDSVVETVTDMRHTFIEDLVSKHVPEHAYAEQW
DVAGLKEELNRVVGLDIPVDEWAKEEGIADEELLVRLEKVFDEHMAAKVAQWGPDVMR
YAEKSILLQTLDHLWREHLVMLDHLRQVIGLRGYGQRDPLQEYKSEAFNLFQEMSAHL
REAVTAQLMRVEIIPPEQPRELPPMEVHKMDPNTGEDEMQFANVSLAPADTVEKSERD
PNRPESWGKVGRNEDCPCGSGKKYKHCHGRYA"
misc_feature complement(344072..346681)
/locus_tag="RPD_0299"
/gene_synonym="azi; div"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature complement(345650..346003)
/locus_tag="RPD_0299"
/gene_synonym="azi; div"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature complement(343853..343909)
/locus_tag="RPD_0299"
/gene_synonym="azi; div"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 347027..347944
/locus_tag="RPD_0300"
/db_xref="GeneID:4020759"
CDS 347027..347944
/locus_tag="RPD_0300"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_567439.1"
/db_xref="GI:91974780"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:4020759"
/translation="MTPASSAAISALRSGFISAAATGCLAFALLASPMAHAEDANPVL
AKVNGAEIRQSDVALAEEELGPSLAQMDPATKKENVLAFLIDMKIVAKAAEDKKIADR
AEFKKRLEFARNRLLMDDLLAVEGKNATTNDAMKKVYEDAAKQISGEQEVHARHILVE
SEDDAKAVAEELKKGADFAELAKKKSKDPGASDGGDLGFFTKEQMVPEFSAVAFAMEP
GKISDPVKSQFGWHIIKVEEKRSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAKV
ERLDKPAEPAAAPADAAKPADPAKAPAKK"
misc_feature 347072..347833
/locus_tag="RPD_0300"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:178832"
misc_feature 347492..347740
/locus_tag="RPD_0300"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
gene complement(348152..349207)
/locus_tag="RPD_0301"
/db_xref="GeneID:4020760"
CDS complement(348152..349207)
/locus_tag="RPD_0301"
/codon_start=1
/transl_table=11
/product="acyltransferase 3"
/protein_id="YP_567440.1"
/db_xref="GI:91974781"
/db_xref="InterPro:IPR002656"
/db_xref="GeneID:4020760"
/translation="MTANGTHVPARMHGDRVDWVDYAKGICIIMVVMMHSVLGVEAAA
GETGFMHLVVEFAKPFRMPDFFLLSGLFLAVVIDRDWRTYLDRKVVHFAYFYVLWVTI
QFAFKAPSFAAEIGWAGVVKLYALSFIDPFGTLWFIYLLPIFFVVTKATRRAPPLLIW
AIAALLESLHVATGWMVIDEFCARFFYFYTGYLFASRVFAFSDAARARPALALIGLAL
WAAINAALVHTGVSEWPLLSLLLGLAGACAIIAAGTLLAEKRWLDGLRFCGEHSIVIY
LAFFLPMAVSRTLLLKFAGFLGTGMIALLVTIIGVVGALVIWRLAMLSGATFLFERPN
AFWIAPRKKSARLQAAE"
misc_feature complement(<348581..349186)
/locus_tag="RPD_0301"
/note="OpgC protein; Region: OpgC_C; cl00792"
/db_xref="CDD:199344"
misc_feature complement(<348749..349159)
/locus_tag="RPD_0301"
/note="Acyltransferase family; Region: Acyl_transf_3;
pfam01757"
/db_xref="CDD:201957"
gene 349371..351848
/locus_tag="RPD_0302"
/db_xref="GeneID:4020761"
CDS 349371..351848
/locus_tag="RPD_0302"
/codon_start=1
/transl_table=11
/product="ATP-dependent helicase HrpB"
/protein_id="YP_567441.1"
/db_xref="GI:91974782"
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR007502"
/db_xref="InterPro:IPR010225"
/db_xref="InterPro:IPR011545"
/db_xref="GeneID:4020761"
/translation="MHLSRSFDTPLPIDDALADLTSALAGNSTAVLVAPPGAGKTTRV
PLALLDQPWLGTKKIIMLEPRRIAARASAERMAKTLGERAGETVGYRVRFGSKISRAT
RIEVVTEGIFTRQILDDPELAGIGAVLFDEFHERSLDADLGLALARDAQQGLREDLRI
LVMSATIDGARVARLLGDAPVVESLGRAFPVETRYLGRRSDAPMERQMAEAIAAALRS
DAGSVLAFLPGAAEIRRTETMLRERVHDAAIEIVPLFGALDAAVQDRAIQPAPKGSRK
VVLATSIAETSLTIEGVRIVVDCGLSRVPRYEPDIGLTRLETVRASRAAVDQRRGRAG
RIEPGVCYRLWDEPQTASLPAYTQPEILSADLTSLLLDLAQWGVTDPATLAFLDPPPG
PALKEARELLAELGALDADGRITDEGRALRAMALPPRLARMIVDAARLDHGEEAAEIA
AILTERGLGGDSVDLDHRRDQFRRDRSQRAMSARQMAQRWAGQASSPSPQGGEELSTG
VLLAFAFPDRVAKNRGNGSFVLANGRGAAIEQTSALARAPYLAVAELTGTAAQGRILL
AAPITLAEIEQHFAGQITDADDVSFDRAAMALRARRRRALHAITLSEAPQALTPSAET
AQVLADGLIAAGLDRLPWSKQLQQWRGRVMFLRKAEGEPWPDLSDSALAEQREDWLVP
ALFDKAGLKDVSAGDLSDALMNLLPWDLRARLDREAPTHFEAPTGSRLPIDYEAEQGP
TIAVRLQELFGLTSHPSVAGGAVPLVLELLSPAHRPVQVTRDLPGFWRGSYAAVRADL
RGRYPRHPWPEDPAGAPPTRRAKPKGT"
misc_feature 349401..351842
/locus_tag="RPD_0302"
/note="ATP-dependent helicase HrpB; Region: DEAH_box_HrpB;
TIGR01970"
/db_xref="CDD:162630"
misc_feature 349461..349871
/locus_tag="RPD_0302"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 349479..349493
/locus_tag="RPD_0302"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 349761..349772
/locus_tag="RPD_0302"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 350016..350402
/locus_tag="RPD_0302"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(350052..350063,350133..350138,350211..350219)
/locus_tag="RPD_0302"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(350235..350237,350352..350354,350364..350366,
350373..350375)
/locus_tag="RPD_0302"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 351405..351803
/locus_tag="RPD_0302"
/note="ATP-dependent helicase C-terminal; Region: HrpB_C;
pfam08482"
/db_xref="CDD:149509"
gene 351980..352492
/locus_tag="RPD_0303"
/db_xref="GeneID:4020762"
CDS 351980..352492
/locus_tag="RPD_0303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567442.1"
/db_xref="GI:91974783"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR011969"
/db_xref="GeneID:4020762"
/translation="MRNIMIFAALMVVLGSVMAQLADRMMPAPAQASVAKATTVGMSS
NAGARSVAIPRDARGHFQTDGRIDGQRIAFMVDTGASVVALNERSAAQFGLRPRPAEY
TARVSTANGTVKAARARLAMLDVGGLIVRDVDAMVLPDEALSENLLGLSFLSKLRRFE
YANGQMVLEQ"
misc_feature 352154..352441
/locus_tag="RPD_0303"
/note="Bacterial aspartate proteases, retropepsin-like
protease family; Region: retropepsin_like_bacteria;
cd05483"
/db_xref="CDD:133150"
misc_feature 352208..352216
/locus_tag="RPD_0303"
/note="catalytic motif [active]"
/db_xref="CDD:133150"
misc_feature 352208..352210
/locus_tag="RPD_0303"
/note="Catalytic residue [active]"
/db_xref="CDD:133150"
gene complement(352495..353367)
/locus_tag="RPD_0304"
/db_xref="GeneID:4020763"
CDS complement(352495..353367)
/locus_tag="RPD_0304"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567443.1"
/db_xref="GI:91974784"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4020763"
/translation="MMTPRAATLIGLSAILMWSLLAVLTVATGTIPPFQLAAMTFAIG
ALAAATGWILRPGAIRALRQPPLVWAVGVGGLFGYHALYFLALRLAPPAEAGLLNYLW
PLLIVLFSSLLPGERLRPHHIAGALLGLVGTALLFTGNGAALEPAYLPGLAAAFVAAF
VWAAYSVLSRRLKAVPTDAVAGFCFVTALLAALVHGVIESTVWPQGAAQWLAIVALGI
GPVGAAFYAWDIGMKRGDIRVLGAASYATPLLSTGFLIIAGYAQPTATLALAALLIAG
GGLLAARDMLRGGK"
misc_feature complement(352606..353361)
/locus_tag="RPD_0304"
/note="aromatic amino acid exporter; Provisional; Region:
PRK11689"
/db_xref="CDD:183277"
misc_feature complement(352999..353322)
/locus_tag="RPD_0304"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(353514..354239)
/locus_tag="RPD_0305"
/db_xref="GeneID:4020764"
CDS complement(353514..354239)
/locus_tag="RPD_0305"
/codon_start=1
/transl_table=11
/product="acetoacetyl-CoA reductase"
/protein_id="YP_567444.1"
/db_xref="GI:91974785"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR011283"
/db_xref="GeneID:4020764"
/translation="MARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFK
SETGIPVYKWDVSSFEACAAGVKQVEADLGPVDILVNNAGITRDGAFHKMTLEQWNAV
INTNLGSLFNMTRQVIEGMRARKFGRIVNISSVNGQKGQFGQVNYSAAKAGDIGFTKA
LALENARGGITVNAICPGYINTEMVQAVPKEVLEKAILPLIPCNRLGEADEIARAVVF
LAAEDSGFITGSTLSINGGQVMT"
misc_feature complement(353520..354233)
/locus_tag="RPD_0305"
/note="acetoacetyl-CoA reductase; Region: AcAcCoA_reduct;
TIGR01829"
/db_xref="CDD:188169"
misc_feature complement(353523..354233)
/locus_tag="RPD_0305"
/note="beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs; Region:
BKR_SDR_c; cd05333"
/db_xref="CDD:187594"
misc_feature complement(order(353688..353696,353700..353702,
353706..353711,353787..353789,353799..353801,
353838..353846,353925..353927,353985..353996,
354072..354080,354138..354143,354198..354209,
354213..354215))
/locus_tag="RPD_0305"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187594"
misc_feature complement(order(353523..353525,353529..353567,
353574..353576,353586..353591,353595..353600,
353607..353609,353616..353627,353631..353639,
353703..353705,353739..353744,353748..353765,
353769..353774,353781..353786,353793..353798,
353805..353828,353874..353876,353883..353888,
353895..353900,353904..353909,353916..353921,
353931..353933,353940..353945,353952..353960,
353964..353975,354051..354053,354165..354167,
354177..354179))
/locus_tag="RPD_0305"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(353748..353753,353757..353765,
353769..353774,353781..353786,353793..353798,
353805..353831,353874..353876,353883..353888,
353895..353897,353904..353909,353916..353921,
353931..353933,353940..353945,353952..353954,
353958..353960,353964..353972))
/locus_tag="RPD_0305"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(353787..353789,353799..353801,
353838..353840,353922..353924))
/locus_tag="RPD_0305"
/note="active site"
/db_xref="CDD:187594"
gene complement(354417..355595)
/locus_tag="RPD_0306"
/db_xref="GeneID:4020765"
CDS complement(354417..355595)
/locus_tag="RPD_0306"
/EC_number="2.3.1.9"
/note="Catalyzes the synthesis of acetoacetyl coenzyme A
from two molecules of acetyl coenzyme A. It can also act
as a thiolase, catalyzing the reverse reaction and
generating two-carbon units from the four-carbon product
of fatty acid oxidation; in Rhizobia and Ralstonia is
involved in PHB biosynthesis"
/codon_start=1
/transl_table=11
/product="acetyl-CoA acetyltransferase"
/protein_id="YP_567445.1"
/db_xref="GI:91974786"
/db_xref="InterPro:IPR002155"
/db_xref="GeneID:4020765"
/translation="MSDDVVIVSAARTAVGSFNGAFATTPAHELGAVAIKAALERGGI
EPARVSEVIMGQILTAAQGQNPARQASIAAGLPVESPAWGVNQLCGSGLRTVALGYQA
LLNGDSEIVVAGGQESMSMAPHAQYLRGGVKMGAVEFVDTMIKDGLWDAFNGYHMGNT
AENVARQYQITRQQQDEFAVASQLKAEAAQKAGKFKDEIVPVTIKTRKGDIIVDTDEY
PRHGATIEAMAKLKPAFEKDGTVTAGSASGINDGAAVVVLMTAKQAAKEGKTPLARIV
SWAHAGVDPKIMGTGPIPASRAALKKAGWTINDLDLIEANEAFAAQACAVNKDLGWDV
SKVNVNGGAIAIGHPVGASGARVLVTLLHEMQKRDAKKGLATLCIGGGMGIAMCLARD
"
misc_feature complement(354420..355589)
/locus_tag="RPD_0306"
/note="putative acyltransferase; Provisional; Region:
PRK05790"
/db_xref="CDD:180261"
misc_feature complement(354423..355580)
/locus_tag="RPD_0306"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature complement(order(354450..354455,354690..354692,
354750..354752,354756..354758,354762..354764,
355236..355238,355281..355283,355290..355295,
355314..355316,355338..355349,355380..355382,
355392..355394,355401..355403,355443..355445,
355524..355526))
/locus_tag="RPD_0306"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature complement(order(354462..354464,354552..354554,
355329..355331))
/locus_tag="RPD_0306"
/note="active site"
/db_xref="CDD:29411"
gene 355878..356486
/locus_tag="RPD_0307"
/db_xref="GeneID:4020766"
CDS 355878..356486
/locus_tag="RPD_0307"
/codon_start=1
/transl_table=11
/product="polyhydroxyalkanoate synthesis repressor PhaR"
/protein_id="YP_567446.1"
/db_xref="GI:91974787"
/db_xref="InterPro:IPR007897"
/db_xref="InterPro:IPR010134"
/db_xref="InterPro:IPR012909"
/db_xref="GeneID:4020766"
/translation="MRVGAMAKSDQPTTIKKYANRRLYNTGTSTYVTLEDLASMVKDG
EDFLVYDAKTGDDITRSVLAQIIFEQENKAGQNLLPTTFLRQLIRFYGDSMQMVVPKY
LEQSIDSLTRDQEKFRKQLTSTFSLTPFGPLEETVRRNMELFQQTFSMFVPIKPSHGP
QTDEVAVEVTSGTDNIDDLRRQMKDMQERLDRMSLDHPKKEE"
misc_feature 355890..356456
/locus_tag="RPD_0307"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5394"
/db_xref="CDD:34954"
misc_feature 355917..356108
/locus_tag="RPD_0307"
/note="PHB/PHA accumulation regulator DNA-binding domain;
Region: PHB_acc_N; pfam07879"
/db_xref="CDD:149123"
misc_feature 356112..356234
/locus_tag="RPD_0307"
/note="PHB accumulation regulatory domain; Region:
PHB_acc; pfam05233"
/db_xref="CDD:203218"
gene complement(356488..358239)
/locus_tag="RPD_0308"
/db_xref="GeneID:4020767"
CDS complement(356488..358239)
/locus_tag="RPD_0308"
/codon_start=1
/transl_table=11
/product="GGDEF domain-containing protein"
/protein_id="YP_567447.1"
/db_xref="GI:91974788"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="GeneID:4020767"
/translation="MPSADPASDHASAPPRSVGPDPSAILAALGQAAFVWDLATDAII
WTGRASDLFQDIPAETLSTGAGYASLLEPSRAIRADALLNGAAAAGENCVPYRIEYGV
RAATSAPIIWIEESGFWYPGADGRPASVEGIVRINNERHAREQQLLQLSQHDPLTGEL
NRTYLVAALAESIEEAARFRSSLCFMLIGLDHLARINDSFGFDVADELICTIAQRIRA
RLRSGDQLGRFSGNKFGLILKNCTVDDAQVAAERFLIAVRDEIVPTRSGPVSVTASIG
AVSSPRHARTAEEAINRAQEALSAAKHRRCGAFSMWRPNVERDAQRRVNIRVTDEIVT
ALNERRIVLAYEPVVDVATRAPAFHECLVRMMQDDGQVLLAPDIVPVAERLGLIRLVD
HRVLELVVAELAASPQMTLSLNISPDTTMDADWWAGIESLMLAHPGVAERLIVEITET
VAIQDIDEVRGFVTRLKKFGSKIAIDDFGAGYTSFRNLRNLGVDIVKIDGAFVQNIAR
SVDDRAFVQTLIDLARRLGIKTVAEWVQDEESALLLRDWGCDYIQGRLIGLASQQRPS
DVPAAAIAAAVRERVAN"
misc_feature complement(357325..357786)
/locus_tag="RPD_0308"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(357544..357546,357673..357675))
/locus_tag="RPD_0308"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(357541..357552,357556..357558,
357622..357624,357634..357636,357646..357651,
357658..357660))
/locus_tag="RPD_0308"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(357484..357486,357568..357570))
/locus_tag="RPD_0308"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature complement(356566..357249)
/locus_tag="RPD_0308"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 358341..358739
/locus_tag="RPD_0309"
/db_xref="GeneID:4020768"
CDS 358341..358739
/locus_tag="RPD_0309"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567448.1"
/db_xref="GI:91974789"
/db_xref="GeneID:4020768"
/translation="MRGGARNEALRGGIFLAMIPLRRCERLEMVQVQTMTKIWIDQGD
DDIRDFGADHDAEPELIETLPAPVTPVQPRMRYTDRPVRPSSNFIAQLMAIDRGNPHP
REAPRAEQNQATAAYRSAKTYAAGRTRRVS"
gene complement(358756..359406)
/locus_tag="RPD_0310"
/db_xref="GeneID:4020769"
CDS complement(358756..359406)
/locus_tag="RPD_0310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567449.1"
/db_xref="GI:91974790"
/db_xref="GeneID:4020769"
/translation="MSIIGFPLLLIPLAICNIVVFLMPGVGFDAPLTRIPLPSGTIWT
ISAGEMLVALGVLMLLFEVIKAARPGAKYLTDHLLSLLVLGGTVAEFVMLPQFGNATV
FLLATLMLVDFLAGIALRHQPQPRTAGHARSRSVAKVDLPQQEPAVAAAPAAETPVAP
FPTATAASISAASIAEAVLLDRPQPVASPKASASSPRIQSPGLQPADAAAGVQPPR"
gene complement(359642..359824)
/gene="rpmF"
/locus_tag="RPD_0311"
/db_xref="GeneID:4020770"
CDS complement(359642..359824)
/gene="rpmF"
/locus_tag="RPD_0311"
/note="some L32 proteins have zinc finger motifs
consisting of CXXC while others do not"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L32"
/protein_id="YP_567450.1"
/db_xref="GI:91974791"
/db_xref="InterPro:IPR002677"
/db_xref="GeneID:4020770"
/translation="MAVPRRKTSPSRRGMRRSADALKRPTYAEDKDSGELRRPHHLDL
KTGMYKGRQVIKKKDA"
misc_feature complement(359645..359824)
/gene="rpmF"
/locus_tag="RPD_0311"
/note="50S ribosomal protein L32; Validated; Region: rpmF;
PRK01110"
/db_xref="CDD:179224"
gene complement(360016..360705)
/gene="mtgA"
/locus_tag="RPD_0312"
/db_xref="GeneID:4020771"
CDS complement(360016..360705)
/gene="mtgA"
/locus_tag="RPD_0312"
/note="glycosyltransferase; polymerizes glycan strands in
the peptidoglycan"
/codon_start=1
/transl_table=11
/product="monofunctional biosynthetic peptidoglycan
transglycosylase"
/protein_id="YP_567451.1"
/db_xref="GI:91974792"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR011812"
/db_xref="GeneID:4020771"
/translation="MKRAIRAAILTVLVLLAAPYVLTLLYGAGQPVSTLMIWRWLTGA
TVTREWVDIERISPALPRTVVASEDAKFCSHRGIDWDSVRDVIDDMQDGEATRGGSTI
TQQVAKNLFLWPGRSMVRKALEFPLALWIDLVLSKQRVLELYLNIAEWGPDGQFGAEA
GAQYAFGRSAGQLTAQEAALMASILPNPRTRSARKPGRGVRRLAATYVARARSAELQQ
CWRENSALSGN"
misc_feature complement(360034..360651)
/gene="mtgA"
/locus_tag="RPD_0312"
/note="monofunctional biosynthetic peptidoglycan
transglycosylase; Provisional; Region: mtgA; PRK00056"
/db_xref="CDD:178830"
misc_feature complement(<360061..360594)
/gene="mtgA"
/locus_tag="RPD_0312"
/note="Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane];
Region: MrcB; COG0744"
/db_xref="CDD:31087"
gene 360822..361787
/locus_tag="RPD_0313"
/db_xref="GeneID:4020772"
CDS 360822..361787
/locus_tag="RPD_0313"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_567452.1"
/db_xref="GI:91974793"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:4020772"
/translation="MNGPAEFYLEHFRMATGTSTIDFAKRLDTTAEDTEALLGRLLSD
DLLPDEITRPRRLMEAIRYATLGGGKRLRPFLAVESAAVFGVERASALLVGAALECIH
CYSLIHDDLPAMDNSDLRRGRPTLHKAYDDATAILAGDALLTFAFDIITRDEVHRDPQ
VRLDLNRVLARCAGLGGMVGGQILDLAGEGRFGDREPVDVARLQQMKTGALLRYGCVA
GAILGEAPPEHYRALDDYGRALGEAFQIADDLLDVEGDAAALGKPAGADAALGKTTFV
TQLGIDGAKQRVRDLLVRADEALAPFGAKGDVLRAAARFVAERKS"
misc_feature 360975..361778
/locus_tag="RPD_0313"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature 360978..>361697
/locus_tag="RPD_0313"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature order(361122..361124,361131..361139,361143..361151,
361161..361166,361179..361184,361365..361367,
361374..361376,361440..361445,361452..361454,
361563..361568,361575..361577,361605..361607,
361620..361622,361635..361637)
/locus_tag="RPD_0313"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature order(361131..361154,361161..361166)
/locus_tag="RPD_0313"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature order(361146..361151,361164..361166,361179..361184,
361374..361376,361440..361442,361563..361568,
361575..361577,361605..361607,361620..361622,
361635..361637)
/locus_tag="RPD_0313"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature order(361146..361151,361164..361166,361179..361184,
361440..361442,361563..361568)
/locus_tag="RPD_0313"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature order(361146..361151,361164..361166,361179..361184,
361374..361376,361440..361442)
/locus_tag="RPD_0313"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature order(361170..361214,361584..361589,361605..361622,
361629..361643)
/locus_tag="RPD_0313"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature order(361563..361568,361575..361577,361605..361607,
361620..361622,361635..361637)
/locus_tag="RPD_0313"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene 361795..362481
/locus_tag="RPD_0314"
/db_xref="GeneID:4020773"
CDS 361795..362481
/locus_tag="RPD_0314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567453.1"
/db_xref="GI:91974794"
/db_xref="InterPro:IPR009781"
/db_xref="GeneID:4020773"
/translation="MSREAPDDPRLLRFRKLPRAVRVVVSRPRLFISVAVGVIAALLL
PASLRPVTRALIGWDVSIVVYLALAFSMMARCDIDYIRRNAVLQDDGRFLILMVTATG
AFASIAAIVAELGSGHRGAAELALATVTIALSWAAVHTTFALHYAHEYYRGAQVGGLQ
FPSGDTHEDADYWDFVYFSFVIGMTAQVSDVGITDKTIRRTATAHGVVSFVFNTALVA
LMVNIAAGAI"
misc_feature 361924..362451
/locus_tag="RPD_0314"
/note="Protein of unknown function (DUF1345); Region:
DUF1345; pfam07077"
/db_xref="CDD:148595"
gene 362564..364216
/locus_tag="RPD_0315"
/db_xref="GeneID:4020774"
CDS 362564..364216
/locus_tag="RPD_0315"
/codon_start=1
/transl_table=11
/product="Na+/H+ antiporter"
/protein_id="YP_567454.1"
/db_xref="GI:91974795"
/db_xref="InterPro:IPR004705"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:4020774"
/translation="MQVVAGPFHQRHCGFVEAKFLIFLILLAVLAGTALLARRFHVAP
AILLLLAGIVLAFIPGMPAIQLPPDLILLLVLPPLIYSASVAMSWREFRSNLRPIGLL
AIGCVIFTACAVAVATHYLLGLSWSVGFLLGAIVAPPDVVAPLAIARKLGLPRRIIVV
LEGEGLANDATALILYRFALAAIMTGVFSLPKASGTFAAIMVGELAFGVAVGWLSLRA
RHYARDPQIEITLSLLTPYIAYWIPEHLGGSGVIATVACGLYISWNGPLLIPAATRLQ
GIFFWDLVIYLIEGLLFLLTGFQMRAILERSKAFPLDDIVAATLLVAAIVIVARFLWV
FPASYLPRILSKRLRISDPSPPWRAVFVVAFTGVRGAVSLATALALPFTLPDGSGFPD
RDLILFVAFGVILITVVGLGSTLPAVVMALGVARDGQSEHIAEHENEIAARREALSAA
LASLDAMTNDRELSDEVVTLLRARHDIRANQLPASLDDEAYAVTADERALVRELIAAE
RRFIHAQLRDGKITDEARRRIERDLDLEEASLANREFRKGAQ"
misc_feature 362822..>363349
/locus_tag="RPD_0315"
/note="Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: KefB;
cl10482"
/db_xref="CDD:164194"
gene complement(364246..365580)
/locus_tag="RPD_0316"
/db_xref="GeneID:4020775"
CDS complement(364246..365580)
/locus_tag="RPD_0316"
/codon_start=1
/transl_table=11
/product="ferric reductase transmembrane component-like
protein"
/protein_id="YP_567455.1"
/db_xref="GI:91974796"
/db_xref="InterPro:IPR000951"
/db_xref="InterPro:IPR001433"
/db_xref="InterPro:IPR008333"
/db_xref="InterPro:IPR013112"
/db_xref="InterPro:IPR013130"
/db_xref="GeneID:4020775"
/translation="MQFMRLTATFALVVLGLAALWALSLAPGALSQGFWATRTTLVYG
TGVMALGLMSVGIILAARPVWFETPLGGLDKFYRLHKWLGLSALGFALAHWVLRKGPS
WITELGLFAIPPKPPHAKDVPTGFDVFRDLRDFAAEIGEWALYLLVALVALALWKRFP
YKYFFKTHRLMPMVYLVLVFHAFILIDRSYWTQPLGPVLALLLAAGTLAALIALFRKI
GSGRQASGKIATLRLYEGNQVLDVGVRLETAWRGHEAGQFAFVNFDDIEDAHPFTISS
TWQNDGMLLFTIKGLGDYTRSLAGSLRLGQGVVVEGPYGRFDFHGDAGRQIWIGGGVG
VTPFIARLRDLARVGRSEPVDLFYATNVPDTAFIAPIRQLALQTGISFHLVDGSQDGR
LTLESLAATVPDWKQADIWFCGPSGFGDAMRGAMIAQGLPKARFHQELFEMR"
misc_feature complement(364249..365478)
/locus_tag="RPD_0316"
/note="Predicted ferric reductase [Inorganic ion transport
and metabolism]; Region: COG4097"
/db_xref="CDD:33854"
misc_feature complement(365044..365448)
/locus_tag="RPD_0316"
/note="Ferric reductase like transmembrane component;
Region: Ferric_reduct; pfam01794"
/db_xref="CDD:201977"
misc_feature complement(364255..364878)
/locus_tag="RPD_0316"
/note="NAD(P) binding domain of ferredoxin reductase-like
proteins catalyze electron transfer between an
NAD(P)-binding sub-domain of the alpha/beta class and a
discrete (usually N-terminal) domain, which varies in
orientation with respect to the NAD(P)...; Region:
FNR_like_3; cd06198"
/db_xref="CDD:99795"
misc_feature complement(order(364582..364584,364696..364701,
364705..364710,364714..364716,364720..364722,
364762..364773,364807..364809))
/locus_tag="RPD_0316"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99795"
misc_feature complement(order(364762..364767,364771..364773))
/locus_tag="RPD_0316"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99795"
misc_feature complement(order(364636..364638,364642..364644,
364666..364668,364687..364689,364696..364698,
364705..364707))
/locus_tag="RPD_0316"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99795"
misc_feature complement(order(364570..364572,364576..364587,
364597..364599))
/locus_tag="RPD_0316"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99795"
misc_feature complement(order(364336..364341,364501..364506,
364579..364584))
/locus_tag="RPD_0316"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99795"
gene complement(365780..367105)
/gene="ispG"
/locus_tag="RPD_0317"
/gene_synonym="gcpE"
/db_xref="GeneID:4020776"
CDS complement(365780..367105)
/gene="ispG"
/locus_tag="RPD_0317"
/gene_synonym="gcpE"
/EC_number="1.17.7.1"
/note="catalyzes the conversion of 2C-methyl-D-erythritol
2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl
diphosphate; involved in isoprenoid synthesis"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase"
/protein_id="YP_567456.1"
/db_xref="GI:91974797"
/db_xref="InterPro:IPR004588"
/db_xref="GeneID:4020776"
/translation="MSQKPDIPDAMNKLENPLQNDVAGPAPRRQTTQVMVGDVAVGGG
APIVVQSMTNTDTADVEGTIKQVAALARAGSEMVRITVDREEAAAAVPHIRDGLRKLG
LTTPLIGDFHYIGHKLLADYPACAEALDKYRINPGNVGFKNKRDSQFTDIVEIAIKNN
KAVRIGANWGSLDQELLTKLMDENAASAQPRDVRAVTREAMVQSALLSAARAEEIGLP
KTKMILSAKVSAVQDLIAVYQDLASRSDYAIHLGLTEAGMGSKGIVASSAALGILLQQ
GIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGFRTFVPLVAACPGCGRTTSTTFQEL
ARSIQDFIRLEMPSWKTRYPGVENLNVAVMGCIVNGPGESKHANIGISLPGTGESPAA
PVFVDGQKFRTLRGPSIATDFKALVIDYIEQRYGAGTKPGAPQMVPAAE"
misc_feature complement(365834..367039)
/gene="ispG"
/locus_tag="RPD_0317"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed; Region: ispG; PRK00366"
/db_xref="CDD:178989"
misc_feature complement(<366188..367030)
/gene="ispG"
/locus_tag="RPD_0317"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature complement(365966..>366319)
/gene="ispG"
/locus_tag="RPD_0317"
/gene_synonym="gcpE"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
gene complement(367135..368049)
/locus_tag="RPD_0318"
/db_xref="GeneID:4020777"
CDS complement(367135..368049)
/locus_tag="RPD_0318"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567457.1"
/db_xref="GI:91974798"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4020777"
/translation="MSSISSAVARPLSAGAIALMLLCCFSWGFNQIAVKLVLPEIPPF
LQAAMRSIAGLIVILIIAWARGVKLFQRDGTLKAGLLAGVLFGIEFVLIYRGLLLTTA
SRGVVFLYTAPFIVALGSYHFLGERLRTLQWAGLALSFAGVALAIGVPQPDVDATVLI
GDLMLVGGGAMWGATTLIVKASRLQQAPAEKGLAYQVAISIPILLLAALISGETIDKM
PGPLSLTLMAYQSIWVVGLTFLLWFGLVKTYSASKLSAFTFITPLFGVAAGYLIMHDP
LNPAFGVAALLVIAGLYLVNRPAKAVPA"
misc_feature complement(367609..367977)
/locus_tag="RPD_0318"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature complement(367174..367971)
/locus_tag="RPD_0318"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:162128"
misc_feature complement(367159..>367395)
/locus_tag="RPD_0318"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(368182..368670)
/locus_tag="RPD_0319"
/db_xref="GeneID:4020778"
CDS complement(368182..368670)
/locus_tag="RPD_0319"
/codon_start=1
/transl_table=11
/product="zinc uptake regulator ZUR"
/protein_id="YP_567458.1"
/db_xref="GI:91974799"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:4020778"
/translation="MTALKPAFPAPNHDHERCAADGIEHAERICADRSQNLTPIRKQV
LRALLSSHRPLGAYEVIDELARDMPRPAPITVYRALDFLMQNGLVHRIESRNAFLACG
RDHDDASAVAFLICECCGSVGEIPAAAVAQSLSDAARGSGFTPKLSVVEITGVCGHCQ
SD"
misc_feature complement(368203..368556)
/locus_tag="RPD_0319"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(368299..368301,368332..368334,
368356..368358,368509..368511))
/locus_tag="RPD_0319"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(368413..368457)
/locus_tag="RPD_0319"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(368227..368229,368278..368280,
368353..368355,368359..368361))
/locus_tag="RPD_0319"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(368206..368232,368236..368244,
368269..368274,368320..368328))
/locus_tag="RPD_0319"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(368203..368205,368314..368316,
368323..368325))
/locus_tag="RPD_0319"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(368865..370073)
/locus_tag="RPD_0320"
/db_xref="GeneID:4020779"
CDS complement(368865..370073)
/locus_tag="RPD_0320"
/EC_number="2.3.1.9"
/note="catalyzes the thiolytic cleavage of
beta-ketoadipyl-CoA to succinate and acetyl-CoA"
/codon_start=1
/transl_table=11
/product="beta-ketoadipyl CoA thiolase"
/protein_id="YP_567459.1"
/db_xref="GI:91974800"
/db_xref="InterPro:IPR002155"
/db_xref="InterPro:IPR012793"
/db_xref="GeneID:4020779"
/translation="MADVFVCDAVRTPIGRFGGSLARVRADDLAAVPIKALIARHPNL
DWSAVDEVFFGCANQAGEDNRNVARMAALLAGLPDSVPGQTLNRLCASGLDAVGAAGR
AIRSGEIDLAIAGGVESMTRAPFVQGKATEAFSRQAEIFDTTIGWRFINPLMKAQYGV
DAMPETGENVAEEFQISRADQDAFAIRSQQRAGAAIAAGYFAEEIAPVSAPGGKAGPI
IVDKDEHPRPETTLEGLAKLKPIVRNPGTVTAGNASGVNDGAAAIIVASEAAVKKHGL
TPRARILGLASAAVPPRIMGIGPVPATRKLMDRLGLKISDFDLIELNEAFASQGIACL
RQLGVADDADFVNPHGGAIALGHPLGMSGARLALTAVHGMEKRGGRLALATMCVGVGQ
GVAMAIEKLN"
misc_feature complement(368871..370073)
/locus_tag="RPD_0320"
/note="beta-ketoadipyl CoA thiolase; Validated; Region:
PRK09050"
/db_xref="CDD:181624"
misc_feature complement(368874..370061)
/locus_tag="RPD_0320"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature complement(order(368901..368906,369147..369149,
369207..369209,369213..369215,369219..369221,
369711..369713,369756..369758,369765..369770,
369789..369791,369813..369824,369855..369857,
369867..369869,369876..369878,369921..369923,
370005..370007))
/locus_tag="RPD_0320"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature complement(order(368913..368915,369003..369005,
369804..369806))
/locus_tag="RPD_0320"
/note="active site"
/db_xref="CDD:29411"
gene 370238..373009
/locus_tag="RPD_0321"
/db_xref="GeneID:4020780"
CDS 370238..373009
/locus_tag="RPD_0321"
/note="This protein performs the mismatch recognition step
during the DNA repair process"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutS"
/protein_id="YP_567460.1"
/db_xref="GI:91974801"
/db_xref="InterPro:IPR000432"
/db_xref="InterPro:IPR001638"
/db_xref="InterPro:IPR005748"
/db_xref="InterPro:IPR007695"
/db_xref="InterPro:IPR007696"
/db_xref="InterPro:IPR007860"
/db_xref="InterPro:IPR007861"
/db_xref="GeneID:4020780"
/translation="MHRVMTIRPDIPPQPDIAAPAEPPARVSPMMEQYHEIKAANPGL
LLFYRMGDFYELFFEDAEIASRALGITLTKRGKHLGADIPMCGVPVERSDDYLHRLIA
LGHRVAVCEQTEDPAAARARKSVVRRDVVRLITPGTLTEDTLLDARANNYLMAIARTR
GSAGVDRIGLAWIDISTGEFCVTECATGELSATLARINPNEAIVSDALYSDAELGPSL
RELAAVTPLTRDVFDSATAERRLCDYFAVATMDGLAALSRLEAAAAAACVTYVDRTQL
GKRPPLSPPAREAAGATMAIDPATRANLELTRTLGGERRGSLLDAIDCTVTAAGSRLL
AQRLAAPLTDEAAIARRLDAVAAFVADSALREQIRSALRAAPDMARALARLSLGRGGP
RDLASLRDGVSAADKVLAQLSQLAQPPHDIAAAMAALRRPSRDLCQELARALADDLPL
LKRDGGFVRDGYEAALDETRKLRDASRLVVAAMQARYADETGVKGLKIRHNNVLGYFV
EVTAQHGDRLMAPPLNATFIHRQTLAGQVRFTTAELGEIEAKIANAGDRALGLELDIF
DRLAAMIDTAGDDLRAAAHAFALLDVATALAKLAVSDNYVRPEVDGSLAFAIEGGRHP
VVEQALKRAGEPFIANACDLSPVPPPFPPPLAGEGRVGAGQIWLLTGPNMAGKSTFLR
QNALIALLAQTGSFVPASRARIGIVDRLFSRVGAADDLARGRSTFMVEMVETATILNQ
ATERALVILDEIGRGTATFDGLSIAWAAIEHLHEQNRCRALFATHYHELTALSAKLPR
LFNATVRVKEWRGEVVFLHEVLPGSADRSYGIQVAKLAGLPPSVVARAKSVLAKLEAN
DRGQSARTLADDLPLFAMTARAPVEPPPPSEAEQLIEAVRALHPDELSPREALDALYA
LKAKLPKAD"
misc_feature 370316..372958
/locus_tag="RPD_0321"
/note="DNA mismatch repair protein MutS; Provisional;
Region: PRK05399"
/db_xref="CDD:180056"
misc_feature 370319..370663
/locus_tag="RPD_0321"
/note="MutS domain I; Region: MutS_I; pfam01624"
/db_xref="CDD:144998"
misc_feature 370688..371086
/locus_tag="RPD_0321"
/note="MutS domain II; Region: MutS_II; pfam05188"
/db_xref="CDD:147397"
misc_feature 371618..371908
/locus_tag="RPD_0321"
/note="MutS family domain IV; Region: MutS_IV; pfam05190"
/db_xref="CDD:203196"
misc_feature 372089..372787
/locus_tag="RPD_0321"
/note="MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired and
unpaired bases embedded in duplex DNA and activating endo-
and exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal...; Region: ABC_MutS1;
cd03284"
/db_xref="CDD:73043"
misc_feature 372248..372271
/locus_tag="RPD_0321"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73043"
misc_feature order(372257..372262,372266..372274,372380..372382,
372485..372490,372590..372592)
/locus_tag="RPD_0321"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73043"
misc_feature 372371..372382
/locus_tag="RPD_0321"
/note="Q-loop/lid; other site"
/db_xref="CDD:73043"
misc_feature 372395..372436
/locus_tag="RPD_0321"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73043"
misc_feature 372473..372490
/locus_tag="RPD_0321"
/note="Walker B; other site"
/db_xref="CDD:73043"
misc_feature 372497..372508
/locus_tag="RPD_0321"
/note="D-loop; other site"
/db_xref="CDD:73043"
misc_feature 372578..372598
/locus_tag="RPD_0321"
/note="H-loop/switch region; other site"
/db_xref="CDD:73043"
gene complement(373035..374597)
/locus_tag="RPD_0322"
/db_xref="GeneID:4020781"
CDS complement(373035..374597)
/locus_tag="RPD_0322"
/EC_number="3.1.2.1"
/codon_start=1
/transl_table=11
/product="acetyl-CoA hydrolase"
/protein_id="YP_567461.1"
/db_xref="GI:91974802"
/db_xref="InterPro:IPR003702"
/db_xref="GeneID:4020781"
/translation="MVASASRVLDPHLRSRIMTAADAAALIPSGANVGMSGFTGSGYP
KLLPLALAERINAHHARGQKFKVSVWTGASTAPELDGALAKVDGIEMRLPYQSDPTCR
KRINAGRMEYIDIHLSHVAQHVWFGFLGKLDVAIVEVAGIREDGSLIPSSSIGNNKTW
LDLADKVILEVNAWQDIRLEGMHDVYYGTQLPPHRKPIPIVASGDRIGEQYLRCDPSK
IVAIVETNLPDRNSAFSAPDEASQAIAEHILEFLGHEVKKGRLPPNLLPLQSGVGNVA
NAVMAGLEDGPFDNMTAYTEVLQDGMLSLLRKGKLAHASATALSLSPDGYDEFLRNLD
FYRERILLRPQEISNHPEVIRRLGVIAMNGLIEADIYGNVNSTHITGTSIMNGIGGSG
DFARNSYLSFFMTPSAAKGGKISCIVPMASHVDHTEHDVQVIVTEQGLADLRGLSPKQ
RAKVIIQNCAHPTFKPALKEYYKRALEYSPGLHTPHILDEALTFLPNWMANKAAREAW
REDAVVQADVWR"
misc_feature complement(373926..374567)
/locus_tag="RPD_0322"
/note="Acetyl-CoA hydrolase/transferase N-terminal domain;
Region: AcetylCoA_hydro; pfam02550"
/db_xref="CDD:111448"
misc_feature complement(373116..374552)
/locus_tag="RPD_0322"
/note="succinate CoA transferases; Region: YgfH_subfam;
TIGR03458"
/db_xref="CDD:163273"
misc_feature complement(373188..373625)
/locus_tag="RPD_0322"
/note="Acetyl-CoA hydrolase/transferase C-terminal domain;
Region: AcetylCoA_hyd_C; pfam13336"
/db_xref="CDD:205516"
gene complement(375533..376999)
/locus_tag="RPD_0323"
/db_xref="GeneID:4020782"
CDS complement(375533..376999)
/locus_tag="RPD_0323"
/codon_start=1
/transl_table=11
/product="putative Omp2b porin"
/protein_id="YP_567462.1"
/db_xref="GI:91974803"
/db_xref="GeneID:4020782"
/translation="MNSIKRLALGSAAALFAIGSAQAADLPLKAKAVEYVKICSIYGA
GFYYIPGTDTCIKLGGYVRADVTFNGSNAYDAPAWNGASGAKNRNANSYIFRSRQDIN
VDTRTATEYGVVRTYFDAVFSWTTGGANSGIAGGELGVYYAFVQFAGFTFGKAVSQFD
TPWTGYPGNNTSYLIGGYDNVTGINQVAYTSEFGNGVSASVSLEDQSAYLQSNLYNTN
VGGTVLGYGANSYAGTSVPDIVGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHP
GDTWGYAVQGALSLKNLPTGPGDSINITATYSNGATRYVIGGVTTPASFLIYDNGSIP
GTYQSVAFAHAADGVFAGANNVFGTGIEKTNAWGVRGAFNHNWSPYWSSSLFGSYTSI
DYNGNASALICAGLGAPVAGFNCNPDFRIAQVGTVTRWTPVKNLTFSGEVLYTYLDQS
HTGVVNVSAIPALGKPTANYELKDQGVWTGSLRVQRTF"
misc_feature complement(375560..376927)
/locus_tag="RPD_0323"
/note="Porin subfamily; Region: Porin_2; pfam02530"
/db_xref="CDD:190338"
gene 377484..377993
/locus_tag="RPD_0324"
/db_xref="GeneID:4020783"
CDS 377484..377993
/locus_tag="RPD_0324"
/codon_start=1
/transl_table=11
/product="regulatory protein MarR"
/protein_id="YP_567463.1"
/db_xref="GI:91974804"
/db_xref="InterPro:IPR000835"
/db_xref="GeneID:4020783"
/translation="MPRKAKLGLAVQSIAVDPSTVGEFVTAIGSIAVYLDEIRQFRAK
SLGISGPQFAMLTTIRGLDEGDGISVRHVAKAIHVDSSFITTQSKILEKKGLLRRQTD
ETDARVVNLSLTDKAYKQIAGLAADEQSLNEFIFADLSRDAFEGVTAQLTGLKARLEK
ACLKIAGGF"
misc_feature 377613..377909
/locus_tag="RPD_0324"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 377625..377810
/locus_tag="RPD_0324"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene complement(378222..379013)
/locus_tag="RPD_0325"
/db_xref="GeneID:4020784"
CDS complement(378222..379013)
/locus_tag="RPD_0325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567464.1"
/db_xref="GI:91974805"
/db_xref="GeneID:4020784"
/translation="MLGGLPDWHRLDPSAEPEAIRRCLESFDPPVEAVAIPWREDLFL
DSYYLPFERSGTDRAPIAVCIGEMRSKEELLIVMARPARERRLALLCVDSGSDDVEAP
RRSVRPESCVTAVIDYLVELPGIDPNRIALIADGSPSSLIAKGVVMDGRVAAAVCDGG
LWELWEHAQTASLPGYLGAIAPTPIVAAIRCPTLIPLLPGSGIDPVYAKDLLSSHQAR
DRRIAIADLAPQQSEMAPADSRIWAETTLNWVSRQLDGIQKIAER"
gene complement(379446..379530)
/locus_tag="RPD_R0007"
/note="tRNA-Leu5"
/db_xref="GeneID:4020785"
tRNA complement(379446..379530)
/locus_tag="RPD_R0007"
/product="tRNA-Leu"
/db_xref="GeneID:4020785"
gene 379721..380266
/locus_tag="RPD_0326"
/db_xref="GeneID:4020786"
CDS 379721..380266
/locus_tag="RPD_0326"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567465.1"
/db_xref="GI:91974806"
/db_xref="GeneID:4020786"
/translation="MTANLLHHTGLGFRPARAARIARNVALTYAVIAAAALGAAWFFQ
LALDLTPCPLCLEQRYAYYAAIPLAGLIALGAWREAPISLLIAGLAVLAVLALGNAGL
GAYHAGVEWKFWTGPTDCAGPVLDFGKAGSLLDQLDKVKVMRCDEVQWRFLGLSLAGY
NVLVSLALAALAAWGIARIRR"
misc_feature <379862..380215
/locus_tag="RPD_0326"
/note="Disulfide bond formation protein DsbB; Region:
DsbB; pfam02600"
/db_xref="CDD:202302"
gene 380435..381637
/locus_tag="RPD_0327"
/db_xref="GeneID:4020787"
CDS 380435..381637
/locus_tag="RPD_0327"
/codon_start=1
/transl_table=11
/product="histidine kinase, dimerisation/phosphoacceptor"
/protein_id="YP_567466.1"
/db_xref="GI:91974807"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR011495"
/db_xref="GeneID:4020787"
/translation="MPSEHRPAPATAPEASLNRLEELPYRRRQQALLREFGTAALQTR
DFRQILQQAVDLSARGLGCSFAKVLEYVAVEKRLIVRAGIGWPAGTVDHVSLGADIES
PAGFAFQTGQSVVSNHLQDETRFRTPKLLADHGIKRAINVLIRRGGEGDTAFGVLEAD
SPDPGQFDDADADFLAGFAGLLGIAIERQHADAKLQEALDHEALLTREMSHRVKNSLT
SVVGLLRVQARGSESADVKNALEDAAMRVASIAGVHDHLWRGSKVGFVDLSDFVSHLC
ETLQGSAPEHVIQCRSDDIILSADKAIPLGLLVNELVTNAIKYAYVDGHGVIRLDARE
INGHLLVEISDEGAGLPDGFDINQPRKSLGFRVILGLVRQLLGELTISKNLPRGALFT
IKFPVDPP"
misc_feature 380567..380932
/locus_tag="RPD_0327"
/note="GAF domain; Region: GAF; cl15785"
/db_xref="CDD:210185"
misc_feature 380984..381625
/locus_tag="RPD_0327"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature 381056..381283
/locus_tag="RPD_0327"
/note="Histidine kinase; Region: HisKA_2; pfam07568"
/db_xref="CDD:203685"
misc_feature 381347..381619
/locus_tag="RPD_0327"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(381365..381367,381377..381379,381386..381388,
381461..381463,381467..381469,381473..381475,
381479..381484,381518..381529,381575..381577,
381581..381583,381596..381601,381605..381607)
/locus_tag="RPD_0327"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 381377..381379
/locus_tag="RPD_0327"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(381473..381475,381479..381481,381518..381520,
381524..381526)
/locus_tag="RPD_0327"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 381649..382092
/locus_tag="RPD_0328"
/db_xref="GeneID:4020788"
CDS 381649..382092
/locus_tag="RPD_0328"
/codon_start=1
/transl_table=11
/product="response regulator receiver"
/protein_id="YP_567467.1"
/db_xref="GI:91974808"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:4020788"
/translation="MREKQASHGGRETNAILVSPFYMPSILSPIRILVVENETFIRLD
VVEVLRVAGFNVAEAVNADEGIKMLEADPDIRLMFTDIEMPGAMNGLELAATVRERWP
PIKIIAASGRFKLQASDLPAGALFFLKPYETSQIIDAVRGLTAVA"
misc_feature 381742..382071
/locus_tag="RPD_0328"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 381745..382077
/locus_tag="RPD_0328"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(381754..381759,381889..381891,381916..381918,
381976..381978,382024..382026,382033..382038)
/locus_tag="RPD_0328"
/note="active site"
/db_xref="CDD:29071"
misc_feature 381889..381891
/locus_tag="RPD_0328"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(381898..381903,381910..381918)
/locus_tag="RPD_0328"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 382033..382041
/locus_tag="RPD_0328"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 382089..382913
/locus_tag="RPD_0329"
/db_xref="GeneID:4020789"
CDS 382089..382913
/locus_tag="RPD_0329"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567468.1"
/db_xref="GI:91974809"
/db_xref="InterPro:IPR007903"
/db_xref="GeneID:4020789"
/translation="MSAGPNSSNAVSSQRLHIPIASVGPHTGKSQMTPVKILLMAAVI
STVGMTHALAECEIADAKLEEAIQENPRFRGPANSQSVRDLRSLRDAAFTLRSYGRHE
DCERLLANIRELIAGPPMGSLGDNDEEQADIQNSAREPKVRRGAAAGNRGKKDAKPLI
RIDQLTPGLRTDEMIGAEVRSSDDKIVGEVRNIVFGTKDGRDYAIIASGGFFTTGKDS
IVVPIRSLQVTQDRSSFFLPIAKDVMRTVPVMPDQDYNWLSDQAWRTQNDALFEQP"
misc_feature 382605..382820
/locus_tag="RPD_0329"
/note="PRC-barrel domain; Region: PRC; pfam05239"
/db_xref="CDD:203221"
gene complement(383067..384146)
/locus_tag="RPD_0330"
/db_xref="GeneID:4020790"
CDS complement(383067..384146)
/locus_tag="RPD_0330"
/codon_start=1
/transl_table=11
/product="putative ammonia monooxygenase"
/protein_id="YP_567469.1"
/db_xref="GI:91974810"
/db_xref="InterPro:IPR007820"
/db_xref="GeneID:4020790"
/translation="MSQNSALTAPSLRSRTLNVLETIAIGAAGGGLSYWVQLPGGLIT
GAMVAVAAAGLAGRNMGLPPPLSHIVLMALGVSLGSMVSPAMIHNLSSYPVTIGLLAI
ATFFATFGSAIYLQRIHGWDRTSALLAGSPGALSQIIMLATERKANVPGIAVVQIMRV
IILTSAVPMLLAMTGMMAHGPLPVRGPEATPLVLAAVVAVAVAAALLLRLINFPASWM
FGAMLGSSVLHGSGLVEGTLPEWAYLSALVGIGTLIGSRFGAIKLRTILSYLGAALGS
FAVAIAISGVFVVTIILTTPVRLSDVVVAFSPGAMDAMMALALTLNIDPVFVGAHHLS
RFIYVSIVTPGIVHWFGRSPDDLDD"
misc_feature complement(383634..384089)
/locus_tag="RPD_0330"
/note="membrane protein AbrB duplication; Region:
Gneg_AbrB_dup; TIGR03082"
/db_xref="CDD:200241"
misc_feature complement(383085..383969)
/locus_tag="RPD_0330"
/note="Putative ammonia monooxygenase; Region: AmoA;
pfam05145"
/db_xref="CDD:113899"
misc_feature complement(383097..383522)
/locus_tag="RPD_0330"
/note="membrane protein AbrB duplication; Region:
Gneg_AbrB_dup; TIGR03082"
/db_xref="CDD:200241"
gene 384313..384822
/locus_tag="RPD_0331"
/db_xref="GeneID:4020791"
CDS 384313..384822
/locus_tag="RPD_0331"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567470.1"
/db_xref="GI:91974811"
/db_xref="GeneID:4020791"
/translation="MRAPQIVTIASALMGTALLTLASAAPGHALTAQECSAKYQAAKT
AGTLNGQGWNDFRKAQCASDSAAEADSKAVEAKDKPEAKSAAKSEAKSEAKPKAKPAE
PAAASAGPPTFPTAVDAKFAKEPAARARLHTCAEQWKANKAANTTGGLKWIQKGGGYW
SECNKRLKA"
gene 384922..385305
/locus_tag="RPD_0332"
/db_xref="GeneID:4020792"
CDS 384922..385305
/locus_tag="RPD_0332"
/codon_start=1
/transl_table=11
/product="LrgA"
/protein_id="YP_567471.1"
/db_xref="GI:91974812"
/db_xref="InterPro:IPR005538"
/db_xref="GeneID:4020792"
/translation="MIASLGLILLCQLTAEAAVRALAVPLPGPVIGLLLLLGLLLARD
RLGWLARGPLRNDGVENASKGMLAHLSLLFVPAGVGAIQQLDLIATHGVVIVLVLAGS
VLITLLVTVATFLVTARLLSMWSSR"
misc_feature <385081..385227
/locus_tag="RPD_0332"
/note="LrgA family; Region: LrgA; pfam03788"
/db_xref="CDD:202768"
gene 385302..386024
/locus_tag="RPD_0333"
/db_xref="GeneID:4020793"
CDS 385302..386024
/locus_tag="RPD_0333"
/codon_start=1
/transl_table=11
/product="LrgB-like protein"
/protein_id="YP_567472.1"
/db_xref="GI:91974813"
/db_xref="InterPro:IPR007300"
/db_xref="GeneID:4020793"
/translation="MSATPFSLWVYLSQTPLLWLTVTLLVYAATDAVSQATERSPLAN
PVLHAIWIIGAFLWLTGTSYTTYFSGAQFVHFLLGPATVALAVPLYENRRQVIAAIVP
MALALVVGCIVAIVSVMVLAQLAGLPETVVLSLASKSVTAGVAMGISESLNADPSLTA
VAVVLTGVMGAIMVTPLMNALGIRDFRARGFSVGLASHGIGTARAFQVDAIAGVFAGI
AMSLNALITAMLVPVAVTLLVK"
misc_feature 385416..386015
/locus_tag="RPD_0333"
/note="LrgB-like family; Region: LrgB; pfam04172"
/db_xref="CDD:146683"
gene 386266..386733
/locus_tag="RPD_0334"
/db_xref="GeneID:4020794"
CDS 386266..386733
/locus_tag="RPD_0334"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567473.1"
/db_xref="GI:91974814"
/db_xref="GeneID:4020794"
/translation="MTDASALPTSAAATHRVHGSAPRRAIALLAAVSAIAIALLVSSP
EASTLAVASSDAELVMLLRFMAAVKALLALVALGVSVWRLGFPASPVLKVAYTLAPAL
MCAAPVVIWQMADVAFGAGLFHAGFVLLLLALYADRGQAVELAKSAALKLRRA"
gene complement(386777..387850)
/locus_tag="RPD_0335"
/db_xref="GeneID:4020795"
CDS complement(386777..387850)
/locus_tag="RPD_0335"
/codon_start=1
/transl_table=11
/product="phospholipase/carboxylesterase"
/protein_id="YP_567474.1"
/db_xref="GI:91974815"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR003140"
/db_xref="GeneID:4020795"
/translation="MSDAVVDDIVALLPPLLQSIEALGFIARYLHPPEFGEVMRLAGA
PDAQLRSELPRVAKWPDQFAHLREPLRMAGDHALAAFDGLRTVDSGAGDLGAVFRALR
HLPQALEALYPLAATLPPVSGLYLDPALQQDEALHARLAQPKHPDSGVFHYANEPGSR
GGFSFYVPEYYTPDRAWPLVVALHGGSGNGRLFLWNWLRDARSRGAIVVAPTATGRTW
ALMGDDADTPNLARIVDFIRSRWSIDPERLLVTGLSDGGTFCYVTGLDDASPFTHLAP
IAASFHPLLAGMASVDRLRGLPIQIVHGRHDWMFPVELARQAQQALFKAGADVSYREI
ADLSHTYPRELNAALLDWLNGAG"
misc_feature complement(386780..387364)
/locus_tag="RPD_0335"
/note="Predicted esterase [General function prediction
only]; Region: COG0400"
/db_xref="CDD:30749"
misc_feature complement(386798..387319)
/locus_tag="RPD_0335"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(388007..389698)
/locus_tag="RPD_0336"
/db_xref="GeneID:4020796"
CDS complement(388007..389698)
/locus_tag="RPD_0336"
/codon_start=1
/transl_table=11
/product="chemotaxis sensory transducer"
/protein_id="YP_567475.1"
/db_xref="GI:91974816"
/db_xref="InterPro:IPR000727"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:4020796"
/translation="MFATLSIRAKITTLVAALLIAMTCLGGLGILKVRSMNFAALDLA
TNWLPTIKMLGNLRYNVLNYRTAIRDHLITTTAEGMATVEKRLEAIEGTIQKDLQTYE
KMITTPEERQLYDAWLSEWAKYKPLAAKMIDASRKSVGQSSEEATDLLYKVAGPVASR
MDEILQKDIDLNDRGADGSTALAASTYSSAIYLIVTILGVAIVVGIVASVMVIRDVAQ
GIASIVKPMQSLGQGDLSADVPHRGEKTEIGSMADALQIFKDALISKKAADEDAAREA
EAKIARGQRVDSATRQFETSIGEIVETVSSASTELEASAATLTATAGHAQELTTAVAA
ASEEASTNVQSVASATEEMSSSITEISRQVQESARIASEAVDQARKTNDSVGMLSAAA
ARIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGE
IGQQITGIQSATVQSVSAIKEIGQTIDRMSEIASTIASAVEEQGAATQEISRNVQQAA
QGTQQVSANITDVQRGATETGSASTQVLSAAKSLSQDSNRLKQEVARFLETVRAA"
misc_feature complement(389168..389686)
/locus_tag="RPD_0336"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature complement(388031..388615)
/locus_tag="RPD_0336"
/note="Methyl-accepting chemotaxis protein (MCP)
signalling domain; Region: MCPsignal; pfam00015"
/db_xref="CDD:143806"
misc_feature complement(388133..388615)
/locus_tag="RPD_0336"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(388136..388141,388148..388150,
388157..388162,388169..388171,388178..388183,
388187..388192,388199..388204,388208..388213,
388220..388222,388229..388234,388241..388243,
388250..388255,388262..388267,388271..388276,
388283..388285,388292..388297,388334..388339,
388346..388351,388355..388360,388367..388372,
388379..388381,388388..388393,388400..388402,
388409..388411,388421..388423,388442..388444,
388451..388453,388463..388465,388472..388477,
388484..388486,388493..388495,388502..388507,
388514..388519,388526..388528,388535..388537,
388544..388546,388553..388558,388565..388570,
388577..388579,388586..388591,388598..388600,
388607..388612))
/locus_tag="RPD_0336"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(388376..388477)
/locus_tag="RPD_0336"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(390010..391701)
/locus_tag="RPD_0337"
/db_xref="GeneID:4020797"
CDS complement(390010..391701)
/locus_tag="RPD_0337"
/codon_start=1
/transl_table=11
/product="chemotaxis sensory transducer"
/protein_id="YP_567476.1"
/db_xref="GI:91974817"
/db_xref="InterPro:IPR000727"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:4020797"
/translation="MFAKLSIRAKVTALVAALLIAMTGLGGLGILKVRSMNFAALDLA
TNWLPSIKVLGELRFNVLNYRTMIRNHMLDVTPEGKARFEQRLASIDATIKKDQETYA
AMIASPEERQLYDSWVVQWNDYKSVTTKMLEMSRKDIGKVSAESTDFLFKNLNPIGVR
MDEILQKDIDMNDKGADGATALAASTYSSAIYLVLTILGVAMVVGIVASVMVIRDVAQ
GIASIVKPMQSLGQGDLSADVPHRGEKTEVGSMADALQIFKDALIAKKAADEDAAREA
EAKIARGQRIDAATRQFETSIGEIVETVSSASTELEASAGTLTATAGHAQELTTAVAA
ASEEASTNVQSVASATEEMSSSITEISRQVQESARIATEAVDQARKTNDSVGMLSAAA
ARIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGE
IGQQITGIQAATDQSVSAIKEIGQTIGRMSEIASTIASAVEEQGAATQEISRNVQQAA
QGTQQVSANITDVQRGATETGSASTQVLSAAKSLSQDSNRLKEEVARFLETVRAA"
misc_feature complement(391171..391692)
/locus_tag="RPD_0337"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature complement(390937..391122)
/locus_tag="RPD_0337"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature complement(390034..390618)
/locus_tag="RPD_0337"
/note="Methyl-accepting chemotaxis protein (MCP)
signalling domain; Region: MCPsignal; pfam00015"
/db_xref="CDD:143806"
misc_feature complement(390136..390618)
/locus_tag="RPD_0337"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(390139..390144,390151..390153,
390160..390165,390172..390174,390181..390186,
390190..390195,390202..390207,390211..390216,
390223..390225,390232..390237,390244..390246,
390253..390258,390265..390270,390274..390279,
390286..390288,390295..390300,390337..390342,
390349..390354,390358..390363,390370..390375,
390382..390384,390391..390396,390403..390405,
390412..390414,390424..390426,390445..390447,
390454..390456,390466..390468,390475..390480,
390487..390489,390496..390498,390505..390510,
390517..390522,390529..390531,390538..390540,
390547..390549,390556..390561,390568..390573,
390580..390582,390589..390594,390601..390603,
390610..390615))
/locus_tag="RPD_0337"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(390379..390480)
/locus_tag="RPD_0337"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
STS 392265..392775
/standard_name="D1S3696"
/db_xref="UniSTS:474274"
gene 392283..393380
/locus_tag="RPD_0338"
/db_xref="GeneID:4020798"
CDS 392283..393380
/locus_tag="RPD_0338"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567477.1"
/db_xref="GI:91974818"
/db_xref="InterPro:IPR002549"
/db_xref="GeneID:4020798"
/translation="MRASENRFFILLLLVASIGFGWILLPLYSAVLWGVVIAILFAPL
YRQLNRAFGFRRNLAALTTVAIIVTMVILPISLIGAALAQEARAMFLRIESGNLDMLQ
YLKQVLAEPPAWISGVLERFSIGNLSDLQERLSAVLMRGSQYLAGQAIGIGQGTVEIV
INLGVMVYLLFFLLRDGDLLAARIRRAVPLSVEQESQLLRKFTVVIRATVKGNMLIAL
IQGALGGVMFYILGVNGALLWGVVMAFLSLLPAVGAGLVWLPVALYLLGTGSIWQGVA
LIAFGTMVIGTVDNVLRPVLVGKDTRMPDYVVLISTLGGIQVFGLNGFVIGPVIAAIF
IAAWDIYSASREAAAGIGETTTGGVPTSDAP"
misc_feature 392304..393305
/locus_tag="RPD_0338"
/note="Domain of unknown function DUF20; Region: UPF0118;
pfam01594"
/db_xref="CDD:201878"
misc_feature 392304..393296
/locus_tag="RPD_0338"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
gene complement(393530..394186)
/locus_tag="RPD_0339"
/db_xref="GeneID:4020799"
CDS complement(393530..394186)
/locus_tag="RPD_0339"
/codon_start=1
/transl_table=11
/product="anti-sigma factor ChrR"
/protein_id="YP_567478.1"
/db_xref="GI:91974819"
/db_xref="InterPro:IPR012807"
/db_xref="InterPro:IPR013096"
/db_xref="GeneID:4020799"
/translation="MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAA
ADDLGGALFEDLPVAELSPGLRDAVLARLRSESVAAPATRPHRPRSDIVIPEPLRSYL
GGDLDTLRWTSVAPRVQQIAIDIANCGPRARMLRFQPGTHVPAHGHAGRELTLVLSGS
LCDRDAVLARGDVAETDEHTEHQPYAGPDKDCICLAVTDAPLRFKGMFARMLQPWFGI
"
misc_feature complement(393533..394174)
/locus_tag="RPD_0339"
/note="anti-sigma factor, putative, ChrR family; Region:
anti_sig_ChrR; TIGR02451"
/db_xref="CDD:131504"
misc_feature complement(394073..394159)
/locus_tag="RPD_0339"
/note="Putative zinc-finger; Region: zf-HC2; cl15806"
/db_xref="CDD:210206"
misc_feature complement(393602..>393802)
/locus_tag="RPD_0339"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
gene complement(394183..394770)
/locus_tag="RPD_0340"
/db_xref="GeneID:4020800"
CDS complement(394183..394770)
/locus_tag="RPD_0340"
/note="Member of the extracytoplasmic function sigma
factors which are active under specific conditions; binds
with the catalytic core of RNA polymerase to produce the
holoenzyme and directs bacterial core RNA polymerase to
specific promoter elements to initiate transcription; this
sigma factor is involved in heat shock and oxidative
stress response"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor RpoE"
/protein_id="YP_567479.1"
/db_xref="GI:91974820"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR013249"
/db_xref="GeneID:4020800"
/translation="MDHPRRDPRESAHDLSDCIVRIATDQDEAAFDTLFRHFAPRLKS
YFTRRGGDPAMAEEITQETMVLLWKNAAQFDPSKASPATWIFTIARNLGIDRLRRAKR
PSFDPNDPAFIPDAEEPPDRQFERAEAERRVRDVMDTLSANEKSVLMLSFYENQSHGE
IAERLGLPVGTVKSRIRLAFGKLRAALDAQTGAAQ"
misc_feature complement(394210..394713)
/locus_tag="RPD_0340"
/note="RNA polymerase sigma factor RpoE; Provisional;
Region: PRK09652"
/db_xref="CDD:182019"
misc_feature complement(394465..394671)
/locus_tag="RPD_0340"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(394219..394374)
/locus_tag="RPD_0340"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(394231..394233,394237..394242,
394246..394254,394258..394263,394267..394269,
394297..394302,394318..394320,394348..394350))
/locus_tag="RPD_0340"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 395002..395274
/locus_tag="RPD_0341"
/db_xref="GeneID:4020801"
CDS 395002..395274
/locus_tag="RPD_0341"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567480.1"
/db_xref="GI:91974821"
/db_xref="GeneID:4020801"
/translation="MPERDLDHPAPKKSRRRRSTAPRRRSRTDSRGCDVVVVIQRATC
FVNRSLTTKQEDTMSVLRKLNGMEAAVIGGALLMTLAPLVPYALLG"
gene complement(395596..396153)
/locus_tag="RPD_0342"
/db_xref="GeneID:4020802"
CDS complement(395596..396153)
/locus_tag="RPD_0342"
/codon_start=1
/transl_table=11
/product="HNH endonuclease"
/protein_id="YP_567481.1"
/db_xref="GI:91974822"
/db_xref="InterPro:IPR002711"
/db_xref="InterPro:IPR003615"
/db_xref="GeneID:4020802"
/translation="MNAHVSQGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRV
NIVEHYDRAVHSPTMEFRLPSVVSLKSFVKPSTHPAFTRFNVFLRDRFACQYCGAPED
LTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLTPIQAKMFPRQTPFAPTVHHLHRN
GRMFPPNYLHESWLDYLYWDTELDP"
misc_feature complement(395752..395898)
/locus_tag="RPD_0342"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:28969"
misc_feature complement(order(395752..395754,395764..395766,
395773..395778,395788..395793,395824..395826,
395830..395838,395842..395844))
/locus_tag="RPD_0342"
/note="active site"
/db_xref="CDD:28969"
gene 396439..397437
/locus_tag="RPD_0343"
/db_xref="GeneID:4020803"
CDS 396439..397437
/locus_tag="RPD_0343"
/codon_start=1
/transl_table=11
/product="cysteine synthase A"
/protein_id="YP_567482.1"
/db_xref="GI:91974823"
/db_xref="InterPro:IPR001216"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR005856"
/db_xref="InterPro:IPR005859"
/db_xref="GeneID:4020803"
/translation="MSSAATASIKSSAAAPAQQPGRGRVYDSIADAYGDTPLVRLNRL
PEQNGVKATILAKLEYFNPASSVKDRIGAAMIAAMEREGIIKPDTILIEPTSGNTGIA
LAFVAAAKGYRLKLVMPESMSIERRKMLAFLGAELVLTEAAKGMKGAIAKAEELIAST
PNAVMPQQFKNLANPEVHRRTTAEEIWNDTHGGIDIFVAGVGTGGTITGVGQVLKPRK
PSLKIVAVEPEESPVLSGGAPGPHKIQGIGAGFVPDILDRAVIDEVIKIAGPTAIATS
RALARHEGIAGGISSGAAIAAAIELGKRPENAGKTIVAIVPSFSERYLSTALFEGV"
misc_feature 396511..397416
/locus_tag="RPD_0343"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature 396538..397413
/locus_tag="RPD_0343"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(396550..396558,396601..396603,396619..396621,
396625..396627,396751..396753,396760..396762,
396808..396813,396820..396825,396832..396837,
397000..397005,397276..397284,397288..397296,
397369..397371,397399..397401,397408..397410)
/locus_tag="RPD_0343"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(396640..396642,396730..396732,397039..397056,
397174..397176,397306..397308,397387..397392)
/locus_tag="RPD_0343"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 396640..396642
/locus_tag="RPD_0343"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene complement(397736..399184)
/locus_tag="RPD_0344"
/db_xref="GeneID:4020804"
CDS complement(397736..399184)
/locus_tag="RPD_0344"
/note="catalyzes the formation of alpha-1,4-glucan chains
from ADP-glucose"
/codon_start=1
/transl_table=11
/product="glycogen synthase"
/protein_id="YP_567483.1"
/db_xref="GI:91974824"
/db_xref="InterPro:IPR001296"
/db_xref="InterPro:IPR011835"
/db_xref="GeneID:4020804"
/translation="MTTLTALSVASEIFPLIKTGGLADVTGALPAAVKAHGVAMRTLV
PGYPAVLGGIEDPQQVHSFTEFFGGSARLLAARCDELELLVLDAPHLYVRPGNPYVGP
DAKDWPDNALRFAALAQAGAWIGQGLLPGYAPDILHAHDWQTGLLPAYLRYSGRPAPK
CVFTIHNLAYQGQFPSELLARIGLPERAFSLDGVEYYGGIGYLKAGLQLADRITTVSP
SYALEIQGSEAGMGLEGLLRLRAGQLSGILNGVDTKVWDPSADQLIPATYDVETIGAR
ARNKQALQARFGLRAESGALLFGVISRLSWQKGLDMLLEVLPGMLADGAQLALLGAGD
APLEAGFRDAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRY
GAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADMLTAALTKTRALYADHAT
WRNLQINGMTTDVSWKNPAQHYAKLYRELVDA"
misc_feature complement(397739..399184)
/locus_tag="RPD_0344"
/note="glycogen synthase; Provisional; Region: PRK14099"
/db_xref="CDD:184505"
misc_feature complement(397751..399166)
/locus_tag="RPD_0344"
/note="This family is most closely related to the GT1
family of glycosyltransferases. Glycogen synthase
catalyzes the formation and elongation of the
alpha-1,4-glucose backbone using ADP-glucose, the second
and key step of glycogen biosynthesis. This family...;
Region: GT1_Glycogen_synthase_DULL1_like; cd03791"
/db_xref="CDD:99965"
misc_feature complement(order(398030..398032,398045..398047,
398096..398098,398111..398116,398276..398284,
399122..399124,399131..399133))
/locus_tag="RPD_0344"
/note="ADP-binding pocket [chemical binding]; other site"
/db_xref="CDD:99965"
misc_feature complement(order(397877..397879,397961..397963,
397967..397972,397985..397987,398519..398521))
/locus_tag="RPD_0344"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99965"
gene complement(399181..400455)
/gene="glgC"
/locus_tag="RPD_0345"
/db_xref="GeneID:4020805"
CDS complement(399181..400455)
/gene="glgC"
/locus_tag="RPD_0345"
/EC_number="2.7.7.27"
/note="catalyzes the formation of ADP-glucose and
diphosphate from ATP and alpha-D-glucose 1-phosphate"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate adenylyltransferase"
/protein_id="YP_567484.1"
/db_xref="GI:91974825"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR005836"
/db_xref="InterPro:IPR011831"
/db_xref="GeneID:4020805"
/translation="MRGFMSQGVPAPLARHAMAYVLAGGRGSRLMELTDRRAKPAVYF
GGKSRIIDFALSNALNSGIRRIAVATQYKAHSLIRHLQRGWNFFRPERNESFDILPAS
QRVSDDMWYRGTADAVYQNIDIIESYDPKFIVLLAGDHVYKMDYEKMLQQHVEQGADV
TVGCLEVARSEASAFGVMDVDAKDVIRSFLEKPADPPAMPGKPDKSLVSMGIYVFDTK
FLIEELHRDAANPDSSHDFGKDIIPYIVKHGKAVAHHFDKSCRRSHAEDTSYWRDVGT
VDAYWAANIDLTDIVPQLDLYDREWPIWTYGEITPPAKFVHDKDGRRGEAVSSLVSGG
CIISGASLRHTLLFTGVRAHSYTHIEGAVILPYADIGRSCRLTNVVVDAEVRIPDGLV
VGEDPELDAKRFRRSENGTCLITQPMIDRLGT"
misc_feature complement(399187..400452)
/gene="glgC"
/locus_tag="RPD_0345"
/note="glucose-1-phosphate adenylyltransferase;
Provisional; Region: glgC; PRK00725"
/db_xref="CDD:179099"
misc_feature complement(399634..400401)
/gene="glgC"
/locus_tag="RPD_0345"
/note="ADP-glucose pyrophosphorylase is involved in the
biosynthesis of glycogen or starch; Region:
ADP_Glucose_PP; cd02508"
/db_xref="CDD:133002"
misc_feature complement(order(399739..399744,399748..399750,
400039..400044,400114..400116,400120..400122,
400381..400386,400390..400392))
/gene="glgC"
/locus_tag="RPD_0345"
/note="ligand binding site; other site"
/db_xref="CDD:133002"
misc_feature complement(order(400072..400077,400087..400089,
400093..400095,400147..400149,400156..400158,
400165..400167,400222..400224,400231..400233))
/gene="glgC"
/locus_tag="RPD_0345"
/note="oligomer interface; other site"
/db_xref="CDD:133002"
misc_feature complement(399199..399507)
/gene="glgC"
/locus_tag="RPD_0345"
/note="Glucose-1-phosphate adenylyltransferase, C-terminal
Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase. It
catalyzes the first committed and...; Region:
LbH_G1P_AT_C; cd04651"
/db_xref="CDD:100056"
misc_feature complement(order(399463..399501,399505..399507))
/gene="glgC"
/locus_tag="RPD_0345"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:100056"
misc_feature complement(order(399205..399207,399310..399312,
399409..399411,399418..399420,399424..399426,
399457..399462,399472..399474))
/gene="glgC"
/locus_tag="RPD_0345"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:100056"
misc_feature complement(order(399208..399210,399307..399312))
/gene="glgC"
/locus_tag="RPD_0345"
/note="sulfate 1 binding site; other site"
/db_xref="CDD:100056"
gene complement(400757..403072)
/locus_tag="RPD_0346"
/db_xref="GeneID:4020806"
CDS complement(400757..403072)
/locus_tag="RPD_0346"
/codon_start=1
/transl_table=11
/product="oxidoreductase alpha (molybdopterin) subunit"
/protein_id="YP_567485.1"
/db_xref="GI:91974826"
/db_xref="InterPro:IPR006657"
/db_xref="InterPro:IPR010046"
/db_xref="GeneID:4020806"
/translation="MAQDDTRLHEADLPDATQQTVEYDGPAGGWGSLQGIAQIFGREW
NTPTVIETLMRQNKPKGFMCVSCSWAKPADHHAFEFCENGAKATLWELTSKRCTPEFF
AAHSVAELRGWADYDLEMQGRLTSPMRYDAATDHYVPCSWDEAFQGIGEHLRALDPKS
VIFYASGRASLETSYLYALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFD
DLAKCDAMFVFGQNTGSNSPRFLHPLQEAAQRGVKIITFNPVRERGLESFVNPQSPTQ
MLTGKETAISSQYHQVKVGGDIAVLLGICKHVFAADDAAKASGGTRVLDVNFIAAHTH
GLDAFEAKVRATSWEQIETESGLTRTAIEGAAQVYVEAERVIGVFGMGLTQHVHGFDN
IAMLLNLLLLRGNIGRPGAGISPVRGHSNVQGQRTVGISEKPELVPLDKMAQQFGFAP
PRDKGMNTVEACHGLLEGKVKAFIGLGGNFIRAIPDQGVLEEAWTRMQLTVQIATKLN
RSHLVNGESAYLLPCLGRTEQDVQASGPQAVTIEDTFSCIQGSIGLRQPASEQLLSEL
AIVAGIAKATLPSNPKVKWDEWVGDYGLVRDLIEDSYPDMFHDFNARMFTPGGFYKGN
EARERIWKTETGKAEFTTPEILSSIGFDDAPGRYRLLTMRSNDQFNTTIYGMSDRLRG
IEGRRDVLLINPDDIARAGLTDGQMVWLESDAADGLQREVGPLKVTPFKLPDGCLGGY
YPEMNPLIALTHHDKQSKTPANKSVPVRIRA"
misc_feature complement(400760..402997)
/locus_tag="RPD_0346"
/note="oxidoreductase alpha (molybdopterin) subunit;
Region: Fdhalpha-like; TIGR01701"
/db_xref="CDD:162496"
misc_feature complement(401153..402892)
/locus_tag="RPD_0346"
/note="The MopB_ydeP CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative molybdopterin
cofactor binding site. These members belong to the
molybdopterin_binding (MopB) superfamily of proteins;
Region: MopB_ydeP; cd02767"
/db_xref="CDD:29463"
misc_feature complement(order(401444..401446,401501..401506,
401549..401551,401558..401566,401636..401644,
401816..401821,401924..401935,402182..402184,
402296..402304,402365..402370,402377..402379,
402383..402388,402482..402490,402494..402496,
402758..402760))
/locus_tag="RPD_0346"
/note="putative molybdopterin cofactor binding site
[chemical binding]; other site"
/db_xref="CDD:29463"
misc_feature complement(400766..401101)
/locus_tag="RPD_0346"
/note="The MopB_CT_ydeP CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative molybdopterin
cofactor binding site. This CD is of the conserved
molybdopterin_binding C-terminal (MopB_CT) region...;
Region: MopB_CT_ydeP; cd02787"
/db_xref="CDD:30319"
misc_feature complement(order(400784..400789,400838..400840,
400850..400852,401060..401071,401075..401089))
/locus_tag="RPD_0346"
/note="putative molybdopterin cofactor binding site; other
site"
/db_xref="CDD:30319"
gene complement(403348..403467)
/locus_tag="RPD_R0008"
/db_xref="GeneID:4020807"
rRNA complement(403348..403467)
/locus_tag="RPD_R0008"
/product="5S ribosomal RNA"
/db_xref="GeneID:4020807"
gene complement(403572..406403)
/locus_tag="RPD_R0009"
/db_xref="GeneID:4020808"
rRNA complement(403572..406403)
/locus_tag="RPD_R0009"
/product="23S ribosomal RNA"
/db_xref="GeneID:4020808"
gene complement(406806..406881)
/locus_tag="RPD_R0010"
/note="tRNA-Ala3"
/db_xref="GeneID:4020809"
tRNA complement(406806..406881)
/locus_tag="RPD_R0010"
/product="tRNA-Ala"
/db_xref="GeneID:4020809"
gene complement(406915..406991)
/locus_tag="RPD_R0011"
/note="tRNA-Ile2"
/db_xref="GeneID:4020810"
tRNA complement(406915..406991)
/locus_tag="RPD_R0011"
/product="tRNA-Ile"
/db_xref="GeneID:4020810"
gene complement(407217..408691)
/locus_tag="RPD_R0012"
/db_xref="GeneID:4020811"
rRNA complement(407217..408691)
/locus_tag="RPD_R0012"
/product="16S ribosomal RNA"
/db_xref="GeneID:4020811"
gene complement(409676..410614)
/locus_tag="RPD_0347"
/db_xref="GeneID:4020812"
CDS complement(409676..410614)
/locus_tag="RPD_0347"
/codon_start=1
/transl_table=11
/product="PfkB"
/protein_id="YP_567486.1"
/db_xref="GI:91974827"
/db_xref="InterPro:IPR002173"
/db_xref="InterPro:IPR011611"
/db_xref="GeneID:4020812"
/translation="MVELVTLTPNPAIDLSTSVERMVPSRKLRCAAQQRDPGGGGINV
ARVVKRFGGDVEAIFPAGGFTGQLLRSLLDREHIPSRVVDAVAETREDFSVTEAATGQ
QFRFVLPGLPLAEGEWRGLLELLAGTTPAPKIVVGSGSLPPGVPHDFYAQAAAVAKRI
GAQFFLDTSGASLVAALDQGVTLIKPNLREMQELAGRPLDGEKDWIEAARQPIAAGKV
EIVALSLGHLGALLVTKDLALRSPALPVNQVSTVGAGDSFLGAIAFSLAKGRPIEDAF
RLALASGSASLTMQGTELCRPADVERLCAQVVIEAL"
misc_feature complement(409679..410605)
/locus_tag="RPD_0347"
/note="Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate transport
and metabolism]; Region: FruK; COG1105"
/db_xref="CDD:31302"
misc_feature complement(409736..410602)
/locus_tag="RPD_0347"
/note="1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose...;
Region: FruK_PfkB_like; cd01164"
/db_xref="CDD:29349"
misc_feature complement(order(410201..410203,410444..410446,
410450..410452,410468..410470,410480..410482))
/locus_tag="RPD_0347"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:29349"
misc_feature complement(order(409847..409849,409853..409855,
409925..409927,409943..409945,410054..410056,
410060..410062,410114..410116))
/locus_tag="RPD_0347"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:29349"
gene complement(410826..411650)
/locus_tag="RPD_0348"
/db_xref="GeneID:4020813"
CDS complement(410826..411650)
/locus_tag="RPD_0348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567487.1"
/db_xref="GI:91974828"
/db_xref="InterPro:IPR006015"
/db_xref="InterPro:IPR006016"
/db_xref="GeneID:4020813"
/translation="MIKDLIVNLERNPARDQIADVAVAIAQTFDAHVSGVCFAYESLP
SFAMPDFPSDLLTKMLAESETSARAAVERFEAACKREGVSAEHHLLETPYGTAGRFPR
MARRFDLSVIMQSDPDNVDNDILIEQVLFDSGRPVLIVPYIQKAPLKLDRVICGWDGS
RAATRAINDAMPFLRRAGAVELLIVRDHKVRDEKELRGIEMANHLARHGIKLDIKMIT
APDVGVAATILSHVADCSADLLVMGGYGHSRLREFVLGGVTREMLSSMTVPVLMSH"
misc_feature complement(410835..411197)
/locus_tag="RPD_0348"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(410874..410885,410913..410918,
410922..410927,411096..411098,411177..411185))
/locus_tag="RPD_0348"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene 411884..412120
/locus_tag="RPD_0349"
/db_xref="GeneID:4020814"
CDS 411884..412120
/locus_tag="RPD_0349"
/codon_start=1
/transl_table=11
/product="ChaB"
/protein_id="YP_567488.1"
/db_xref="GI:91974829"
/db_xref="InterPro:IPR009317"
/db_xref="GeneID:4020814"
/translation="MPYSSIDDLPPSLQVRLPLHAQSIYLAAFNNAFADNADRSPEEQ
ESDAHRVAWAAVKKQYRKQDERWVARDPLRSAGS"
misc_feature 411908..412096
/locus_tag="RPD_0349"
/note="ChaB; Region: ChaB; pfam06150"
/db_xref="CDD:148012"
gene complement(412315..414354)
/locus_tag="RPD_0350"
/db_xref="GeneID:4020815"
CDS complement(412315..414354)
/locus_tag="RPD_0350"
/codon_start=1
/transl_table=11
/product="carbamoyl-phosphate synthase L chain,
ATP-binding"
/protein_id="YP_567489.1"
/db_xref="GI:91974830"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR005481"
/db_xref="InterPro:IPR005482"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR011764"
/db_xref="GeneID:4020815"
/translation="MMATTALYRRFRTLLIANRGEIACRVIRTARAMGLRTVAVYSEA
DADALHVSEADEAVLLGPARARDSYLSIERIIAAAKQTGAEAVHPGYGFLSESAEFAQ
ACADAGLIFVGPTPQMITAMGSKSGSKALMEKAGVPLVPGYHGEAQDDATLAAAADKI
GFPVLVKASAGGGGRGMRVVRAANELGEAIVSAKREAKAAFGDDRLLIEKYVDNPRHI
EVQIVGDSHGNLVSLFERECTLQRRHQKVIEEAPSPTLDAAQRETVCEAARRAAGAVN
YVGAGTIEFVSDGKDVFFIEMNTRLQVEHPVTELISGVDLVEWQLRVAFGEALPLRQD
QLTLNGHAIEARVYAENPAKNFMPSVGRISTWRTPAETDGLRIDAGYRAGDSVSPYYD
AMLAKVIAFAPTRAAAIDRLNRGLEETDVRGVVTNIPFLSALVTHPEVRANAIDTGFI
ERHLAALTAAPAPVSDLELATAVAAILRAETDAARAEAPTPWRSSGWMPVGRRKRGFV
FRHGRGHDHTDYKVQLAYGTGLATLTIDGRDLAFASLANGDGLDVLLDGARSRVNAVV
EGHELYLRTRNGRFELHWVDPFGGESEESVGEDKIVAPLPGTVVALLAEQGAKLEKGA
AILTLEVMKMEQTLRAPFAGTLKAIKCKVGDIVQEGVELAEIESAQDATEAQCPS"
misc_feature complement(412354..414327)
/locus_tag="RPD_0350"
/note="Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism]; Region: COG4770"
/db_xref="CDD:34383"
misc_feature complement(414004..414324)
/locus_tag="RPD_0350"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(413458..413964)
/locus_tag="RPD_0350"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature complement(413002..413325)
/locus_tag="RPD_0350"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
misc_feature complement(412357..412554)
/locus_tag="RPD_0350"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(412432..412434,412453..412461,
412486..412488))
/locus_tag="RPD_0350"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(412456..412458)
/locus_tag="RPD_0350"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(414354..415961)
/locus_tag="RPD_0351"
/db_xref="GeneID:4020816"
CDS complement(414354..415961)
/locus_tag="RPD_0351"
/EC_number="6.4.1.3"
/codon_start=1
/transl_table=11
/product="propionyl-CoA carboxylase"
/protein_id="YP_567490.1"
/db_xref="GI:91974831"
/db_xref="InterPro:IPR000022"
/db_xref="InterPro:IPR011762"
/db_xref="InterPro:IPR011763"
/db_xref="GeneID:4020816"
/translation="MMKSASEIRPIVPDVARNAETMRALVGELKDKLDNVAGAGGEAS
RAKHTARGKLLARDRVDLLLDPGTAFLELSPLAAYGLYGGDVHSASVVTGVGRVAGRE
CMIVANDATVKGGTYYPMTVKKHLRAQDIARQNNLPCIYMVDSGGAFLPQQDEVFPDE
RHFGRIFYNQAQMSAQGIPQIAIVMGSCTAGGAYVPAMSDESIIVRNQGTIFLGGPPL
VKAATGEVVSAEELGGADVHSRQSGVTDHYAQNDAHAIGIARKIVGTLKPPQRAVLNM
RAPREPLYPAEQLYGIVPAEQRKPFDVRDIITRIVDGSEFDEFKKLYGQTLVCGFAHI
WGYPVGIIANNGILFSESSLKGAHFIELCCQRGIPLVFLQNITGFMVGKKYEAGGIAR
DGAKLVTAVATANVPKFTVVIGGSYGAGNYGMCGRAYSPRFLWMWPNARISVMGGEQA
AMVLSSLRRDNIEAKGGSWSAEEEEEFRSPIRAQYETQGSPYYATARLWDDGVIDPAD
TRLVLGLGLAASANAPIEPTKFGLFRM"
misc_feature complement(414357..415919)
/locus_tag="RPD_0351"
/note="3-methylcrotonyl-CoA carboxylase, beta chain;
Region: PLN02820"
/db_xref="CDD:178415"
misc_feature complement(<415341..>415760)
/locus_tag="RPD_0351"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
misc_feature complement(<414600..415184)
/locus_tag="RPD_0351"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene complement(416057..416791)
/locus_tag="RPD_0352"
/db_xref="GeneID:4020817"
CDS complement(416057..416791)
/locus_tag="RPD_0352"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_567491.1"
/db_xref="GI:91974832"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4020817"
/translation="MSAPVVVITGAARGIGSAAASTFLDHGWRVHGLDRRAPLIKGAI
GHECDVTSEEQLLSVAERIGPIDALVPGAGINLRPHDNAAEKLTLEAWNRTIAVNLTG
VMLTVRAFRPRIRADGAIVLISSVAALRAMPHSDAYTASKGAIVALTRSWAVDYSRDG
IRVNCVAPGPTDTEMMSGLRDGYAVERQVQLPQQRMATAGEVAQVIRFLASDQASYVS
GAIVPVDGGAVAHSAGVPFPRRRPKP"
misc_feature complement(416117..416725)
/locus_tag="RPD_0352"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(416099..416716)
/locus_tag="RPD_0352"
/note="3-alpha-hydroxysteroid dehydrogenase; Provisional;
Region: PRK12428"
/db_xref="CDD:183524"
misc_feature complement(order(416270..416275,416279..416290,
416366..416368,416378..416380,416417..416425,
416498..416500,416570..416578,416642..416650,
416684..416692))
/locus_tag="RPD_0352"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(416366..416368,416378..416380,
416417..416419,416495..416497))
/locus_tag="RPD_0352"
/note="active site"
/db_xref="CDD:212491"
gene complement(417000..418610)
/locus_tag="RPD_0353"
/db_xref="GeneID:4020818"
CDS complement(417000..418610)
/locus_tag="RPD_0353"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_567492.1"
/db_xref="GI:91974833"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4020818"
/translation="MSDAEDIKLATISDQATNLARRVNVGDITRRGARRHRDKIAVIM
GETRLTYGELDARANRIAHGLLAMGLGNGARIGGLARNSIDFLTLYFAAAKAGAIFCP
SNPAIPDADLVHILGHAEVSAIFIDPDRHQQFTAVASQVPSIRKIFSVGGNGQADSQL
DSLAVIAEGQPAIDPETATGDRDVAMIMYTSGTTSAPKGAMLSHINVTTGAVHNAFAG
EVDENTIATAILPLFHCGQLSISSGTLMRGGTVVVFDGFEPAALLDAIARERITWLFA
LPAMYRALLAHKDLDNTDVSSLAFCLYAMAPMDPSTLREASRRLKARFALTSGQTEAY
PPTVVFAPEFQLTKHGAFWGRAMPLVDLAIMDDDGRLVEDGSVGEIVYRGPMVMEGYL
KDPEATARAFEGGWFHSGDLGRFDEDSLLLFVDRKKDIIKSGGENVSSVKVESCLLAH
PAVRAAAIVGVPHSRWSEAVVAAVCLLPGSVEDEGQLIAHCKQTLAPFEVPKKIVFYR
ELPQTATGKLQKYQIRGELENLFRDQTN"
misc_feature complement(417012..418553)
/locus_tag="RPD_0353"
/note="acyl-CoA synthetase; Validated; Region: PRK08316"
/db_xref="CDD:181381"
misc_feature complement(417237..418463)
/locus_tag="RPD_0353"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(417054..>417371)
/locus_tag="RPD_0353"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
gene complement(418647..419438)
/locus_tag="RPD_0354"
/db_xref="GeneID:4020819"
CDS complement(418647..419438)
/locus_tag="RPD_0354"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase/isomerase"
/protein_id="YP_567493.1"
/db_xref="GI:91974834"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4020819"
/translation="MTDWKTKYKLITFDNDKGVLTVSFSREAKLNAVDARMHTEMSWL
WGDVARDEATRAVLLTGAGAAFSAGGDLDWFKTMTPDALDRLFIEARRIIVDMLEVPQ
PIIAAVNGAATGLGATLALMSDIIYASEKATIADTHVLAGIGAGDGGVVIWPWLCGMA
RAKEYLMTGQKLNAREAHSIGLVNHVVAHDELLDTATRMARRLADGPQLAIRGTKFSL
NKILREAVNLTLDTSLSLEKECFHSADHRECIDAFLEKRKPQFNR"
misc_feature complement(418656..419408)
/locus_tag="RPD_0354"
/note="enoyl-CoA hydratase; Provisional; Region: PRK06688"
/db_xref="CDD:180658"
misc_feature complement(418830..419408)
/locus_tag="RPD_0354"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(419016..419018,419025..419030,
419094..419102,419106..419108,419223..419237,
419247..419249,419343..419345,419349..419351))
/locus_tag="RPD_0354"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(419094..419096,419229..419231))
/locus_tag="RPD_0354"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(418830..418835,418842..418844,
418887..418889,418896..418898,418929..418931,
418938..418943,418947..418952,418956..418961,
418974..418979,418983..418991,418995..418997,
419013..419024,419058..419069,419130..419132,
419154..419156))
/locus_tag="RPD_0354"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(419471..420262)
/locus_tag="RPD_0355"
/db_xref="GeneID:4020820"
CDS complement(419471..420262)
/locus_tag="RPD_0355"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_567494.1"
/db_xref="GI:91974835"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="GeneID:4020820"
/translation="MTLVSAATEQTRDCVTGGDARVVLVTGGASGIGRAAALAWARQG
CSVLVADIDDRGGAETVEAIERLGSRARYQRNDVTDERECASLVEQAVLHFGRLDVAF
NNAGITGPSAYIANYPGADWRHVINVNLLGIFNSMQPQLRLFESQGAGVIVNTASVIG
LRGVAGGSAYAAAKHGVIGLTKCAALEYGRSGIRINAVCPGYIETPLVAAVPDRILTE
KINRTGARRLGRPDEVAALVLWLASPAASYVNGAAVAVDGGFLAS"
misc_feature complement(419486..420202)
/locus_tag="RPD_0355"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(419486..420202)
/locus_tag="RPD_0355"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:180183"
misc_feature complement(order(419654..419665,419741..419743,
419753..419755,419792..419800,419945..419953,
420104..420112,420167..420169,420173..420178,
420182..420184))
/locus_tag="RPD_0355"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(419741..419743,419753..419755,
419792..419794,419876..419878))
/locus_tag="RPD_0355"
/note="active site"
/db_xref="CDD:187535"
gene complement(420259..421437)
/locus_tag="RPD_0356"
/db_xref="GeneID:4020821"
CDS complement(420259..421437)
/locus_tag="RPD_0356"
/EC_number="1.3.99.10"
/codon_start=1
/transl_table=11
/product="isovaleryl-CoA dehydrogenase"
/protein_id="YP_567495.1"
/db_xref="GI:91974836"
/db_xref="InterPro:IPR006089"
/db_xref="InterPro:IPR006090"
/db_xref="InterPro:IPR006091"
/db_xref="InterPro:IPR006092"
/db_xref="InterPro:IPR013107"
/db_xref="GeneID:4020821"
/translation="MIELASFDFDLDEPTRMLRDTVRSFVQAELAPRAYAIEQANDFP
ADIWRKFGSMGLLGITVDEAYGGSGLGYFAHIIAMEEISRASAAVGMSYGAHSNLCVN
QIHRNGTEAQKQRYLPKLVSGENVGALAMSEAGAGSDVVSMKLRADKVGSNFVLNGTK
MWITNGPNADTLVVYAKTDPAAKSKGITAFIVERDFKGFSTSPKLDKLGMRGSNTCEL
VFDNCEVPEANVLGEVGQGVRVLMSGLDYERAVMAAGPVGIMAACLDLVVPYARDRKQ
FGQPIGEFQFIQGKLADMYTAQMTARAYLYGVARAIDGKVLQGQAARKDCAAVILYAA
EQATKVAAEAIQIMGGNGYVNECPAGRYWRDAKIFEIGAGTSEIRRMLIGREIVRSSA
"
misc_feature complement(420265..421425)
/locus_tag="RPD_0356"
/note="isovaleryl-CoA dehydrogenase; Region: PLN02519"
/db_xref="CDD:178134"
misc_feature complement(420271..421410)
/locus_tag="RPD_0356"
/note="Isovaleryl-CoA dehydrogenase; Region: IVD; cd01156"
/db_xref="CDD:173845"
misc_feature complement(order(420316..420324,420331..420336,
420682..420684,420691..420693,420700..420702,
420721..420723,420883..420885,420946..420948,
421024..421026,421141..421143,421153..421155,
421165..421167))
/locus_tag="RPD_0356"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173845"
misc_feature complement(order(420307..420309,420313..420315,
420946..420948,420952..420954,421024..421029,
421042..421047,421051..421053))
/locus_tag="RPD_0356"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:173845"
misc_feature complement(420694..420696)
/locus_tag="RPD_0356"
/note="catalytic base [active]"
/db_xref="CDD:173845"
gene complement(421620..422846)
/locus_tag="RPD_0357"
/db_xref="GeneID:4020822"
CDS complement(421620..422846)
/locus_tag="RPD_0357"
/codon_start=1
/transl_table=11
/product="extracellular ligand-binding receptor"
/protein_id="YP_567496.1"
/db_xref="GI:91974837"
/db_xref="GeneID:4020822"
/translation="MKFYGVTSLSGAVRLAFFASAVCGPGAFNGAAAQEPVRIGVITD
MTGPYSSLSGPGVVVGMKMAVDEFGGKVLGQPIEVLSADSGLKADIALSRAREWYDRQ
NVHMIVESSDSGSAVALQKLGADKKKITMFHSGTTALTNLECSPYGVHYAWDTYSMAS
GAARAAVQAGGNSWYFITADYVFGKSLEADASKIIRQLGGDIIGGVRHPLNVPDFASF
LLSAQQSKAKVVGLANAGSDTQNAVKQAAEFGLGGGQKVVPLLMFDTDVKGLGLKVAQ
GMEFATAFYWDYDDKSREFANKFFAIHKSMPTMNHAGSYSATLQYLKAVQATGSLDAD
KVMKYLKSAKIEDAFARNGRIRVDGRMVHDIYQVRVKTPEESTGPSDILKVILTIKGD
DAFMPLADSTCPLVKK"
misc_feature complement(421734..422741)
/locus_tag="RPD_0357"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature complement(421743..422735)
/locus_tag="RPD_0357"
/note="Periplasmic solute-binding domain of active
transport proteins that belong to the type I periplasmic
binding fold protein family; Region: PBP1_SBP_like_1;
cd06327"
/db_xref="CDD:107322"
misc_feature complement(order(422064..422066,422142..422144,
422298..422300,422442..422447,422508..422516))
/locus_tag="RPD_0357"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107322"
gene 423299..424021
/locus_tag="RPD_0358"
/db_xref="GeneID:4020823"
CDS 423299..424021
/locus_tag="RPD_0358"
/codon_start=1
/transl_table=11
/product="regulatory protein TetR"
/protein_id="YP_567497.1"
/db_xref="GI:91974838"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4020823"
/translation="MPEPPARNRSNVSARIDVSLIAMTKNSADSARPRGLVQVRSSRA
DKQERTRRALLQAAIDIVGDEGYAAATVGKITSRAKVANGTFYNYFDSQQSIFDQLLP
FLGDRLTAHIKAQVDESLTGVARDRARFVAYFDFCRKNPAFLRVLNEAEVFAATAYRQ
HVVAMYEGYLHALERSAAKHEITGYDREELPPVVFMLMGIRSYMTMLYQHNYVERSAL
SIEAMADIYEKLLTLGLFNDRR"
misc_feature 423410..424003
/locus_tag="RPD_0358"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 423458..423598
/locus_tag="RPD_0358"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(424369..424443)
/locus_tag="RPD_R0013"
/note="tRNA-Glu2"
/db_xref="GeneID:4020824"
tRNA complement(424369..424443)
/locus_tag="RPD_R0013"
/product="tRNA-Glu"
/db_xref="GeneID:4020824"
gene 424666..425946
/locus_tag="RPD_0359"
/db_xref="GeneID:4020825"
CDS 424666..425946
/locus_tag="RPD_0359"
/EC_number="4.2.1.70"
/codon_start=1
/transl_table=11
/product="pseudouridine synthase RluD"
/protein_id="YP_567498.1"
/db_xref="GI:91974839"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006145"
/db_xref="InterPro:IPR006224"
/db_xref="InterPro:IPR006225"
/db_xref="GeneID:4020825"
/translation="MVAGGGGGDDARPLRQPQRGLGGDRNASLGAEKLIADGDENRRE
RQRRGQARDHHHPPHPRKQRGLFGGRFGQGGFGHAMLGFGSVFLEGSIVNDSSGHLLE
VVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETIT
IDVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCG
ESLSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAF
VWGAPNRIRGTIDAPIDRHPHAREKMAVRDGGREAITHWEVLETFTGRSGGEIVSLIA
CQLETGRTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAY
LLVLEHPSTGEVVAWESGLPADLKRLKAALTATE"
misc_feature 425002..425931
/locus_tag="RPD_0359"
/note="pseudouridine synthase, RluA family; Region:
rluA_subfam; TIGR00005"
/db_xref="CDD:161659"
misc_feature 425002..>425151
/locus_tag="RPD_0359"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(425002..425004,425038..425043,425047..425052,
425056..425061,425068..425073,425077..425079,
425098..425121,425125..425127)
/locus_tag="RPD_0359"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 425239..425853
/locus_tag="RPD_0359"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(425365..425376,425701..425703)
/locus_tag="RPD_0359"
/note="active site"
/db_xref="CDD:211346"
gene 426165..427064
/locus_tag="RPD_0360"
/db_xref="GeneID:4020826"
CDS 426165..427064
/locus_tag="RPD_0360"
/note="binds with the catalytic core of RNA polymerase to
produce the holoenzyme; this sigma factor is responsible
for the expression of heat shock promoters"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-32"
/protein_id="YP_567499.1"
/db_xref="GI:91974840"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR012759"
/db_xref="GeneID:4020826"
/translation="MARAATLPVLNGESGLARYLAEIRKFPMLEPQQEYMFAKRWREH
DDRDAAHHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPDKGFRLA
TYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDMHPDQVK
LIATRLGVTEQDVIDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDQSPSQEAVMAEHE
ELDHRRAALNGAIGVLNPRERRIFEARRLADEPMTLEDLAAEFGVSRERVRQIEVRAF
EKVQSAVKGTIARQEQAALEAAH"
misc_feature 426165..427016
/locus_tag="RPD_0360"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:180635"
misc_feature 426219..426302
/locus_tag="RPD_0360"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature 426321..426527
/locus_tag="RPD_0360"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 426834..427004
/locus_tag="RPD_0360"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(426867..426869,426897..426899,426921..426926,
426954..426956,426960..426965,426969..426977,
426981..426986,426990..426992)
/locus_tag="RPD_0360"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(427197..427559)
/locus_tag="RPD_0361"
/db_xref="GeneID:4020827"
CDS complement(427197..427559)
/locus_tag="RPD_0361"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567500.1"
/db_xref="GI:91974841"
/db_xref="InterPro:IPR002198"
/db_xref="GeneID:4020827"
/translation="MGDIMGVLASGYTSAALQNPSRTPYKNVDEKLYEGTWSGTYSNT
KKFSITVSDVQGFRAQVRYQSEGSIKFQSVLIKDGSFRVGDTKFTLGANGSASIRTAV
SDPVTGQVNLVKGTAKLG"
gene complement(427695..428594)
/locus_tag="RPD_0362"
/db_xref="GeneID:4020828"
CDS complement(427695..428594)
/locus_tag="RPD_0362"
/codon_start=1
/transl_table=11
/product="beta-lactamase-like protein"
/protein_id="YP_567501.1"
/db_xref="GI:91974842"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4020828"
/translation="MTSSARPEIRAFFDEPTNTISYLVSDPATRRAAVIDPVLDYDHS
DGSVDIRSADAILKAANDGGLTIEWVLETHAHADHLSGAPYIKRNTGARIGIGEHIKD
VQRIFRPMFNADDLRTDGSDFDHLFKDGERFAIGDLAVEVMHTPGHTPADIAYRIGDD
AVFVGDTLFMPDYGTARADFPGGDAHQLYRSIQKLLALPPRTRLFMCHDYKAPGRDEY
AWETTVQAQREGNVHLRGGVSEDEFVDMRNARDATLKAPTLLLPSIQVNIRAGRFPKA
QHNGVHYLLLPVRARPGAEAGVN"
misc_feature complement(427887..428594)
/locus_tag="RPD_0362"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature complement(427989..428534)
/locus_tag="RPD_0362"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 428704..429039
/locus_tag="RPD_0363"
/db_xref="GeneID:4020829"
CDS 428704..429039
/locus_tag="RPD_0363"
/codon_start=1
/transl_table=11
/product="regulatory protein ArsR"
/protein_id="YP_567502.1"
/db_xref="GI:91974843"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:4020829"
/translation="MSLSPTFEADDFAANAARVATVLRALGNTRRLMILCRLIETGEM
TVGALADSIGISQSALSQHLARLRDDGIVTYRRDSQSVWYRIAEPRIEQLIAELHRLF
CRNAAALQR"
misc_feature 428782..429003
/locus_tag="RPD_0363"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(428788..428790,428797..428802,428809..428814,
428821..428823,428914..428916,428971..428976,
428980..428988,428992..429000)
/locus_tag="RPD_0363"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature order(428788..428796,428836..428844,428869..428880,
428884..428889,428896..428901,428905..428910,
428926..428934,428947..428955)
/locus_tag="RPD_0363"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(428836..428838,428845..428847,428971..428973)
/locus_tag="RPD_0363"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene 429057..429875
/locus_tag="RPD_0364"
/db_xref="GeneID:4020830"
CDS 429057..429875
/locus_tag="RPD_0364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567503.1"
/db_xref="GI:91974844"
/db_xref="InterPro:IPR002781"
/db_xref="GeneID:4020830"
/translation="MAITSADLITVASGGLVGFILALIGGGGSVLAVPLLVYVVGIRS
PHVAIGTSSIAVAISALANLLGHWAAGNVRWNCALVFSAAGIGGAFAGSFIAKQIDGQ
KLLLLFGMLMVVIGVLMSRRQSGGGDPTIRLTIATAKTMLPKLIGTGFGVGALAGFFG
IGGGFLIVPGLILATGMPLTSAIGSSLVAVFAFGASTAASYALSGLIDWRLAGLFISG
GLIGGLIGIGAGKLIGAHDKVLRGVFSAVVVVVGLYVCYRGVAYFLVAQHPMSL"
misc_feature 429087..429683
/locus_tag="RPD_0364"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene complement(429936..431549)
/locus_tag="RPD_0365"
/db_xref="GeneID:4020831"
CDS complement(429936..431549)
/locus_tag="RPD_0365"
/EC_number="4.1.1.49"
/note="PEP carboxykinase; PEP carboxylase; PEPCK;
catalyzes the phosphorylation and decarboxylation of
oxaloacetate to form phosphoenolpyruvate using ATP"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxykinase"
/protein_id="YP_567504.1"
/db_xref="GI:91974845"
/db_xref="InterPro:IPR001272"
/db_xref="InterPro:IPR008210"
/db_xref="GeneID:4020831"
/translation="MQETGVHNGAHGADKFGLKNLKGIYWNFGAPQLYEHALRNGEAV
LSADGALVADTGVFTGRSPKDKFTVRDATTETTMWWGGNQSITAEQFETLYQDFIKHA
EGMTLFAQDLYGGADPSFQIKTRVFTELAWHSLFIRTLLRRPDRADLAAFVPELTLID
LPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPERGVLP
MHCSANVGPAGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAK
CIKLSPEAEPEIFAASSRFGAVLENVVLDEITRKPDFDNGSKTENTRSAYPLESIPNA
SPTGRAGQPKNVVMLAADAFGVMPPIAKLTPAQAMYHFLSGYTAKVAGTERGVTEPTP
EFSTCFGSPFLPRDPSVYGNMLRDLIHNHNVDCWLVNTGWTGGKYGTGHRMPIKVTRA
LLTAALDGSLRNAEFRTDPYFGFAVPTALPGVPSDILEPAKTWADKAEFDKTARALVG
MFQKNFAKFEAQVDADVRAAAPDVKIAAE"
misc_feature complement(430092..431492)
/locus_tag="RPD_0365"
/note="Phosphoenolpyruvate carboxykinase; Region:
PEPCK_ATP; pfam01293"
/db_xref="CDD:201716"
misc_feature complement(429996..431486)
/locus_tag="RPD_0365"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_ATP;
cd00484"
/db_xref="CDD:29830"
misc_feature complement(order(430206..430208,430215..430217,
430224..430226,430581..430583,430695..430697,
430722..430724,430728..430730,430779..430784,
430818..430838,430890..430892,430947..430952,
430959..430961,430965..430967,431367..431369))
/locus_tag="RPD_0365"
/note="active site"
/db_xref="CDD:29830"
misc_feature complement(order(430581..430583,430728..430730,
430947..430952,430959..430961,430965..430967,
431367..431369))
/locus_tag="RPD_0365"
/note="substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:29830"
misc_feature complement(order(430728..430730,430779..430784,
430821..430823,430890..430892,430947..430949))
/locus_tag="RPD_0365"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29830"
misc_feature complement(order(430206..430208,430224..430226,
430695..430697,430818..430838))
/locus_tag="RPD_0365"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29830"
gene complement(431739..432473)
/locus_tag="RPD_0366"
/db_xref="GeneID:4020832"
CDS complement(431739..432473)
/locus_tag="RPD_0366"
/codon_start=1
/transl_table=11
/product="pyridoxamine 5'-phosphate oxidase-like
FMN-binding protein"
/protein_id="YP_567505.1"
/db_xref="GI:91974846"
/db_xref="InterPro:IPR011576"
/db_xref="GeneID:4020832"
/translation="MQPTADFNPTRVAKSLLRRRREGALATLLRGSGGPFCSLVNLAT
APDGAPILLISRLAVHTKNLLADPRMSLMLDERAEGDPLEGARIMLLGTALEARPADV
QLLRRRYLAAHPGAEAYIDFTDFSLFTIETSAAHLVAGFGRIVDLAPADFLTDLGGAA
GLLDAEPSAVDHMNVDHLDTLNLYATKLIGAGAADWRCTGVDPEGLDLQAGRTTLRLD
FLERVTTAAGLRDMLKRMADIARSAA"
misc_feature complement(431742..432461)
/locus_tag="RPD_0366"
/note="Putative heme iron utilization protein [Inorganic
ion transport and metabolism]; Region: HugZ; COG0748"
/db_xref="CDD:31091"
misc_feature complement(432048..432443)
/locus_tag="RPD_0366"
/note="Pyridoxine 5'-phosphate (PNP) oxidase-like
proteins; Region: PNPOx_like; cl00381"
/db_xref="CDD:212207"
misc_feature complement(431763..431978)
/locus_tag="RPD_0366"
/note="Protein of unknown function (DUF2470); Region:
DUF2470; pfam10615"
/db_xref="CDD:204534"
gene 432687..433388
/locus_tag="RPD_0367"
/db_xref="GeneID:4020833"
CDS 432687..433388
/locus_tag="RPD_0367"
/codon_start=1
/transl_table=11
/product="winged helix family two component
transcriptional regulator"
/protein_id="YP_567506.1"
/db_xref="GI:91974847"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:4020833"
/translation="MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTS
PPDLAILDIKMPRMDGMETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKP
FSQRLLVERVKAVLRRSAPKDPAAAPKETDAKALDRGLLRMDPERHTCTWKNEPVTLT
VTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFE
MIETLYGVGYRFKET"
misc_feature 432690..433382
/locus_tag="RPD_0367"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 432702..433034
/locus_tag="RPD_0367"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(432708..432713,432840..432842,432864..432866,
432921..432923,432978..432980,432987..432992)
/locus_tag="RPD_0367"
/note="active site"
/db_xref="CDD:29071"
misc_feature 432840..432842
/locus_tag="RPD_0367"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(432849..432854,432858..432866)
/locus_tag="RPD_0367"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 432987..432995
/locus_tag="RPD_0367"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 433101..433376
/locus_tag="RPD_0367"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(433164..433166,433221..433226,433278..433280,
433287..433289,433311..433316,433350..433352,
433365..433367)
/locus_tag="RPD_0367"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 433595..435286
/locus_tag="RPD_0368"
/db_xref="GeneID:4020834"
CDS 433595..435286
/locus_tag="RPD_0368"
/codon_start=1
/transl_table=11
/product="periplasmic sensor signal transduction histidine
kinase"
/protein_id="YP_567507.1"
/db_xref="GI:91974848"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020834"
/translation="MRRAGQFFFTLSFSSLTRRILSLNLAGLMALSASILYLSQFRAG
LIDARAQSLLVQAEIIAGAIAASATVETNTITVDPDRLLDLKPGETYGPPDEFAVLDF
PINPERVAPVLRRLISPTKTRARIYDRDGVLILDSRSLYGRGDVMRFDLPPPTAEKPG
LIERATIAVRTWLNRGDLPLYRELGPENGNGYQEVADSLKGQKNSVVRINDRGEVIVS
VAVPVQRFRAIHGALMLSTQGDDIDQMVTAERLAILKIFGLAAVVMFVLSVLLASTIA
GPVRRLADAAERVRRRIRARVEIPDFTTRRDEIGHLSGALREMTDSLYNRIEAIERFA
ADVSHELKNPLTSLRSAVETLPLAKNDKSRARLLAVIEHDVKRLDRLISDISDASRLD
AELQRQDAAPVDLRRLLTTLTLVANETRLGNNAVVEVRFEGPASDPFSVPGHDSRLGQ
VISNLLSNAQSFSHPGGKVQIVCRRRKTEIEIVVDDDGPGIRDDAFEKIFERFYTDRP
HQGFGQNSGLGLSISKQIVEAHGGKIRAENRPGPRDADGEPTSAGARFVVRLPST"
misc_feature 433646..433831
/locus_tag="RPD_0368"
/note="Sensor N-terminal transmembrane domain; Region:
Sensor_TM1; pfam13755"
/db_xref="CDD:205929"
misc_feature 433904..434233
/locus_tag="RPD_0368"
/note="Stimulus-sensing domain; Region: Stimulus_sens_1;
pfam13756"
/db_xref="CDD:205930"
misc_feature 434237..435277
/locus_tag="RPD_0368"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 434360..434563
/locus_tag="RPD_0368"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature 434573..434764
/locus_tag="RPD_0368"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(434591..434593,434603..434605,434615..434617,
434624..434626,434636..434638,434645..434647,
434693..434695,434705..434707,434714..434716,
434726..434728,434735..434737,434747..434749)
/locus_tag="RPD_0368"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 434609..434611
/locus_tag="RPD_0368"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 434936..435274
/locus_tag="RPD_0368"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(434954..434956,434966..434968,434975..434977,
435044..435046,435050..435052,435056..435058,
435062..435067,435143..435154,435200..435202,
435206..435208,435251..435256,435260..435262)
/locus_tag="RPD_0368"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 434966..434968
/locus_tag="RPD_0368"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(435056..435058,435062..435064,435143..435145,
435149..435151)
/locus_tag="RPD_0368"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 435283..435744
/locus_tag="RPD_0369"
/db_xref="GeneID:4020835"
CDS 435283..435744
/locus_tag="RPD_0369"
/codon_start=1
/transl_table=11
/product="HPr kinase"
/protein_id="YP_567508.1"
/db_xref="GI:91974849"
/db_xref="GeneID:4020835"
/translation="MSAAGSSSVHASAVRVGDHAVLIRGPSGSGKSRLAFGLIVAGRT
GQIPDAELIGDDRVFLERRDGRLWVRPAPELAGMIEVRGLGIRRCPNAPEAVIGLIVD
LAADDAARLPEAAAMQIRIEGVELPRVPVAAEFDPLPLVVAALTTIDAVGA"
misc_feature 435331..>435558
/locus_tag="RPD_0369"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(435361..435366,435373..435375,435388..435390,
435400..435402,435448..435453,435457..435459,
435502..435504,435520..435522,435532..435540,
435553..435555)
/locus_tag="RPD_0369"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(435364..435366,435370..435378,435445..435450,
435520..435522,435526..435528)
/locus_tag="RPD_0369"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(435382..435384,435388..435390,435400..435405,
435433..435435,435502..435504,435514..435516,
435532..435534,435538..435546,435553..435558)
/locus_tag="RPD_0369"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 435884..436342
/locus_tag="RPD_0370"
/db_xref="GeneID:4020836"
CDS 435884..436342
/locus_tag="RPD_0370"
/codon_start=1
/transl_table=11
/product="PTS system fructose subfamily IIA component"
/protein_id="YP_567509.1"
/db_xref="GI:91974850"
/db_xref="InterPro:IPR004701"
/db_xref="GeneID:4020836"
/translation="MVKVTRSRGAPRSAREEFPMIGLVLVTHGRLADEFKAALEHVMG
PQKQIEAVTIGAEDDADLCRSDIIEAVNRVDSGDGVAILTDMFGGTPSNLAISCMSRP
KVEVLAGINLPMLVKLAKVREERALPDAIALAQEAGRKYVTIASRVLAGK"
misc_feature 435944..436303
/locus_tag="RPD_0370"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(435965..435967,436007..436012,436043..436045,
436151..436153,436241..436243)
/locus_tag="RPD_0370"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(435965..435967,436136..436138,436151..436153)
/locus_tag="RPD_0370"
/note="active site"
/db_xref="CDD:28890"
misc_feature 435965..435967
/locus_tag="RPD_0370"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 436339..436674
/locus_tag="RPD_0371"
/db_xref="GeneID:4020837"
CDS 436339..436674
/locus_tag="RPD_0371"
/codon_start=1
/transl_table=11
/product="phosphotransferase system, HPr"
/protein_id="YP_567510.1"
/db_xref="GI:91974851"
/db_xref="InterPro:IPR000032"
/db_xref="InterPro:IPR001020"
/db_xref="InterPro:IPR005698"
/db_xref="GeneID:4020837"
/translation="MTADASQTAPGGQPDTASGASGKISREIPVINKRGLHARASAKF
VQMAEKFHAEVTVTRNGETVGGTSIMGLMMLAAGIGTTVTVSATGPEAREALDALTEL
MGSKFGEEE"
misc_feature 436417..436647
/locus_tag="RPD_0371"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 436417..436428
/locus_tag="RPD_0371"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(436444..436446,436450..436455,436459..436464,
436474..436476,436483..436485,436537..436548,
436555..436560)
/locus_tag="RPD_0371"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 436447..436449
/locus_tag="RPD_0371"
/note="active site"
/db_xref="CDD:29444"
misc_feature 436540..436542
/locus_tag="RPD_0371"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene complement(436731..438272)
/locus_tag="RPD_0372"
/db_xref="GeneID:4020838"
CDS complement(436731..438272)
/locus_tag="RPD_0372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567511.1"
/db_xref="GI:91974852"
/db_xref="GeneID:4020838"
/translation="MTSIATSRTRLSLIERWIDALLDPKRQERTVVLSLAAYAAIWTA
YRTIATWPRDLHADVTELYGWSRNLAFGYDKHPPFSAFVTRAWFSVVPVSDLTFHLLA
TANIALTLYIAWRTMRRYMAAEKALFGLALLTLIPFFNFIALKYNANAVLLPLWALTI
HCFLRAFEQRSLLWPALAGVFAGCSMLGKYWSVVLIGALGLGALLDPRRARFFGSPAP
WLMIVAGALVLAPHLAWLVDHRFPSFTYAAARAGSGFFENALDTLRYLAGCLGYAALA
LVATWALLRPSRAALIDSAWPADPQRRLIVTIQFLMIVAPAPVALASGIRIVPLWTMP
AWTLLPIVLLSSPLIEVGRAALRRMLIGAAALALAILAAAPGVAVAIHTTSAPEPFEY
ASLLADDIARTWQRHSDKPIALVAGETVLAENTAYYLRTDTRAFETADLAALKAEATA
RGAVLVCSATDQTCLATAEQIVAGQPQILRSKVWLSRPLFGIAGGTVRDVFLLVPPPA
TGAAK"
misc_feature complement(437568..438050)
/locus_tag="RPD_0372"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; pfam13231"
/db_xref="CDD:205412"
gene 438293..440227
/locus_tag="RPD_0373"
/db_xref="GeneID:4020839"
CDS 438293..440227
/locus_tag="RPD_0373"
/note="binds to the ribosome on the universally-conserved
alpha-sarcin loop"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_567512.1"
/db_xref="GI:91974853"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006297"
/db_xref="GeneID:4020839"
/translation="MPGGHLPVRPAPSSMPKAAVFRAVVAADRLAGRNRRCYPATMTT
VPIDNIRNFSIVAHIDHGKSTLADRLIQITGGMSDREMAGKEQVLDSMDIERERGITI
KAQTVRLNYRAKDGKDYIFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQT
LANVYHALDAGHEIVPVLNKVDLPAAEPDKVKQQIEDVIGLDASDAVMISAKTGLGVP
DVLEAIVTRLPPPKGDRGATLKALLVDSWYDVYLGVVVLVRVVDGVMKKGQRIRMMGT
GAAYDVERVGFFTPKMTAVDELGPGEIGFITAAIKEVADTRVGDTITDDRKPITEMLP
GFKPAIPVVFCGLFPVDADDFETLRAAMGKLRLNDASFSFEMETSAALGFGFRCGFLG
LLHLEIIQERLSREFDLNLIATAPSVIYKMKLNDGSEIEIHNPVDMPDVVKIAEIEEP
WIEATILTPDEYLGSVLKLCQDRRGNQKELTYVGARAMVKYDLPLNEVVFDFYDRLKS
VSKGYASFDYHLTDYKPADLVKMQILVNAEPVDALSMLVHRTRAEGRGRAMVEKMKEL
IPPHMFVIPIQAAIGGKIIARETVRALRKDVTAKCYGGDITRKRKLLEKQKEGKKKMR
QFGKVDIPQEAFIAALKVDS"
misc_feature 438425..440224
/locus_tag="RPD_0373"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 438443..438985
/locus_tag="RPD_0373"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 438461..438484
/locus_tag="RPD_0373"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(438464..438466,438470..438472,438482..438487,
438494..438496,438503..438508,438605..438610,
438677..438682,438749..438754,438860..438862,
438872..438874)
/locus_tag="RPD_0373"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(438470..438487,438827..438832,438836..438838,
438920..438928)
/locus_tag="RPD_0373"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 438572..438607
/locus_tag="RPD_0373"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 438593..438595
/locus_tag="RPD_0373"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 438665..438676
/locus_tag="RPD_0373"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 438671..438727
/locus_tag="RPD_0373"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 438827..438838
/locus_tag="RPD_0373"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 438920..438928
/locus_tag="RPD_0373"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 439007..439264
/locus_tag="RPD_0373"
/note="Translation_Factor_II_like: Elongation factor Tu
(EF-Tu) domain II-like proteins. Elongation factor Tu
consists of three structural domains, this family
represents the second domain. Domain II adopts a beta
barrel structure and is involved in binding to...; Region:
Translation_Factor_II_like; cl02787"
/db_xref="CDD:207732"
misc_feature 439637..439873
/locus_tag="RPD_0373"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 439895..440218
/locus_tag="RPD_0373"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 440240..440926
/locus_tag="RPD_0374"
/db_xref="GeneID:4020840"
CDS 440240..440926
/locus_tag="RPD_0374"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567513.1"
/db_xref="GI:91974854"
/db_xref="GeneID:4020840"
/translation="MDPVLTEIPGRILDLAFGALSQANMHAVFSDAGNEHWDFISVTN
TAHAGELFLKAIIAKEHPLLIFKDLFSLDDNRTDSIELVNLIKRGKTHEFERLPQIIW
AVTGKRIPNPECYERLRRARNSIQHFCAPEDEDFRDLSLEFIYTIIDPLIFEHFESFA
IEYHEDHSAGDDYVVATLLRKQLRFSVPDDFDITEIRIRDEISASSQTYREWITGELN
RIGRLDLLNK"
gene 441249..441485
/locus_tag="RPD_0375"
/db_xref="GeneID:4020841"
CDS 441249..441485
/locus_tag="RPD_0375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567514.1"
/db_xref="GI:91974855"
/db_xref="GeneID:4020841"
/translation="MPAQPKKPTPKSPRERMAARRERLRAEGLRPVQHWVPDLRDPKV
LADIRREGAMMAKHPDNDAIDAWIEEVADLDAWS"
misc_feature <441339..441479
/locus_tag="RPD_0375"
/note="Protein of unknown function (DUF3018); Region:
DUF3018; pfam11455"
/db_xref="CDD:151894"
gene 441476..441811
/locus_tag="RPD_0376"
/db_xref="GeneID:4020842"
CDS 441476..441811
/locus_tag="RPD_0376"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567515.1"
/db_xref="GI:91974856"
/db_xref="GeneID:4020842"
/translation="MELKRGDVVLLVAQGEIGKPRPGVVVQADELGNATTSVLICPMS
SDLSEFKRTRPWIEPSADNGLRVRSQIMTDKLSPIRRDRVRQVLGVLNAQTQERLDAA
LLVVLGLAR"
misc_feature 441485..441769
/locus_tag="RPD_0376"
/note="PemK-like protein; Region: PemK; pfam02452"
/db_xref="CDD:202245"
gene 441925..443745
/gene="aceK"
/locus_tag="RPD_0377"
/db_xref="GeneID:4020843"
CDS 441925..443745
/gene="aceK"
/locus_tag="RPD_0377"
/EC_number="2.7.11.5"
/note="catalyzes the phosphorylation/dephosphorylation of
the enzyme isocitrate dehydrogenase on a specific serine
which regulates activity; unphosphorylated IDH is fully
active when cells are grown on glucose while the enzyme
becomes phosphorylated and inactive in the presence of
acetate or ethanol"
/codon_start=1
/transl_table=11
/product="bifunctional isocitrate dehydrogenase
kinase/phosphatase protein"
/protein_id="YP_567516.1"
/db_xref="GI:91974857"
/db_xref="InterPro:IPR010452"
/db_xref="GeneID:4020843"
/translation="MTADAHLFSASDLEAATRIAEPDFELLDALIRTDDPDDQAHTLA
RVALSAFDNYYAVSRRIPALAKAAFYARDWPATVRLSKIRIGLYTACIDQLVPLLKAG
LPELANDEQVWVRAEAELLAAIAGRYEADFAFAFWQSLRRKLVSDEWRPVSYDTGPAA
RPPAAIAAVVRTIAATLPIQPEVIRNVLDAAGFTGPWRDLDGDAALAAAAIEAALEPL
SPRAGETAKIEIAESGFFRNRGACLVGRIRLRDRGDMPPRNIPLLVALLNEDDGLVVD
AVLCDSDELQFAFSSTLANYHATNPRYHELARLLHELMPKRPLGTQYSCIGFHHLGKV
AVMNEILTEHRRSKEKLATAPGFKGTVAIAFTMPCSAYVLKIIRDHPTDDYKFDYFDG
LDAVLRKYNLVHEIDRAGSMLDNIIYSNVKLARTMFAPDLLDELLEAGIGTVTLERDA
LVFRHLIVQIKLTPLPLYLTTAAAADARAAVINLGDCIKNNAAADIFNKDLDGRNYGV
SRIRKVYLFDYDAVEQLTEVKVRSTPPMPRAEDEDGVVFRPAQMLEGLRIDDPGLRRA
FRDAHPELMQPDYWEGMQHALRAGKVPKVMNYPTSRRLRR"
misc_feature 442030..443742
/gene="aceK"
/locus_tag="RPD_0377"
/note="bifunctional isocitrate dehydrogenase
kinase/phosphatase protein; Validated; Region: aceK;
PRK02946"
/db_xref="CDD:179509"
misc_feature 442042..443733
/gene="aceK"
/locus_tag="RPD_0377"
/note="Isocitrate dehydrogenase kinase/phosphatase [Signal
transduction mechanisms]; Region: COG4579"
/db_xref="CDD:34217"
gene 443977..444726
/locus_tag="RPD_0378"
/db_xref="GeneID:4020844"
CDS 443977..444726
/locus_tag="RPD_0378"
/note="putative role in sulfur assimilation"
/codon_start=1
/transl_table=11
/product="CysZ-like protein"
/protein_id="YP_567517.1"
/db_xref="GI:91974858"
/db_xref="InterPro:IPR007496"
/db_xref="GeneID:4020844"
/translation="MLDAAIKALTQILSPPMRSILWRSIGFALALIAVAAIGLQRLLS
WLANSSELWAEAALGGFQTPLNILSWVFSIAAGLGIVVGAVFLMPAVTSLVAGIFVDE
AAEHVEREYYPSDQSGVALPVGIAMIETVKTALLTILVYLVALPFLFFAGAGVIVFFV
ATGWLLGREYFELAAMRFRPAADAKAMRRDNATTVFIGGLVIAAFVSIPIVNLATPLF
GMAFMVHLHKRLSGSRPERIAPDRRDRIDAR"
misc_feature 443977..444675
/locus_tag="RPD_0378"
/note="CysZ-like protein; Reviewed; Region: PRK12768"
/db_xref="CDD:171714"
gene 445371..446354
/locus_tag="RPD_0379"
/db_xref="GeneID:4020845"
CDS 445371..446354
/locus_tag="RPD_0379"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase fold protein"
/protein_id="YP_567518.1"
/db_xref="GI:91974859"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR003089"
/db_xref="GeneID:4020845"
/translation="MSAKRDGCMMRALNDNNLPPRTPRTAFHTKPRWDHEGRDWPNQD
ASQFVHAAGLRWHVQQMGRGPVLLLIHGTGAATHSWRMLAPLLAEHFTVVAPDLPGHG
FTETPPPARMTLDAMAQDIATLLRGLGHQPVLVAGHSAGAAVLARMCLDGSIAPAGLV
ALNGALLPIGGAATRLMLPLARVLASSAMVPRLIARFARNKGMVERMIADTGSSVDPA
GIDYYRRLVGSPGHVAAAIRMMASWRLDRLAQQLPGLATRLLLIAGSNDKTIASQDSA
RVHSMVPGARVEIMQGLGHLAHEERPHDVAGMMIELARNAGLLPRMFAAAE"
misc_feature 445485..446312
/locus_tag="RPD_0379"
/note="putative magnesium chelatase accessory protein;
Region: bchO_mg_che_rel; TIGR03056"
/db_xref="CDD:132100"
misc_feature 445533..445748
/locus_tag="RPD_0379"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 446518..448239
/locus_tag="RPD_0380"
/db_xref="GeneID:4020846"
CDS 446518..448239
/locus_tag="RPD_0380"
/codon_start=1
/transl_table=11
/product="peptidase S10, serine carboxypeptidase"
/protein_id="YP_567519.1"
/db_xref="GI:91974860"
/db_xref="InterPro:IPR000379"
/db_xref="InterPro:IPR001563"
/db_xref="GeneID:4020846"
/translation="MGFSLSRDDREGVAQALDCRQTDAVLRSALFPEQSTRRPCRPHA
PPFVLKETLMALSPWSVCRAAMALMLVTTATLASARAQDAAPASQQPAAAQGGKSETG
GSRGKAAAASSDAEQHRLPADSVTRHTLALPGRSLSFAATAGSIRLFNDKAEPQADIA
YTAYQLDNAEARTRPVTFLFNGGPGASSAWLQLGAAGPWRLPIFGEAAVASATPALQP
NAETWLDFTDLVFIDPVGTGYSRLVASGDDVRKQFYSVDGDVDAIALTIRRWLEKHDR
LLSPKYVGGESYGGIRGPRVVRNLQTRQGVGVKGLILVSPLLDFREYSGSSLLQYVAR
LPSMAAAARQQKGPVTRTDLTDVEAYARGEFLADLIKGEADQAATNRLADRVATLTGI
DPAVSRRLAGRLDTSEFQREFDRANGKVTGRFDASVLGFDPFPDSSDAQFSDPSADSL
IAPLTSAAAELTRNPLQWRPDGSYHLLNSSVAQQWDFGRGRNPVESLTQLREILAVDP
KLQVLVTHGLFDLATPYFASQIAIDQLPPFASKRIKLVTWPGGHMTYARDDARKALRG
EVGAMMK"
misc_feature 447034..448125
/locus_tag="RPD_0380"
/note="Serine carboxypeptidase; Region: Peptidase_S10;
cl08270"
/db_xref="CDD:208839"
gene complement(448307..449083)
/locus_tag="RPD_0381"
/db_xref="GeneID:4020847"
CDS complement(448307..449083)
/locus_tag="RPD_0381"
/codon_start=1
/transl_table=11
/product="endonuclease III"
/protein_id="YP_567520.1"
/db_xref="GI:91974861"
/db_xref="InterPro:IPR000445"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR003651"
/db_xref="InterPro:IPR004035"
/db_xref="InterPro:IPR005759"
/db_xref="GeneID:4020847"
/translation="MQKITRRAPAPAVAKSAKIPASSVAAKPRPQRQKSGKAATKPKR
LRRWSPDEVREAFTRFARANPEPKGELEHLNPFTLLVAVVLSAQATDSGVNKATRALF
AVADTPQKMLALGEERVRDYIKTIGLFRTKAKNVIALSQKLITDFGGEVPSTRAELET
LPGAGRKTANVVLNMAFGQPTMAVDTHVFRVGNRTGLAPGDTPLAVELALERMIPPEF
MQHAHHWLILHGRYTCLARKPRCEVCPINDLCRWPEKTVA"
misc_feature complement(448316..448942)
/locus_tag="RPD_0381"
/note="Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair]; Region: Nth;
COG0177"
/db_xref="CDD:30526"
misc_feature complement(448394..448855)
/locus_tag="RPD_0381"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(order(448688..448690,448805..448807,
448814..448822))
/locus_tag="RPD_0381"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(448580..448603)
/locus_tag="RPD_0381"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(448403..448405,448415..448417,
448571..448573))
/locus_tag="RPD_0381"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(448529..448531)
/locus_tag="RPD_0381"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(448328..448387)
/locus_tag="RPD_0381"
/note="iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3); Region:
FES; smart00525"
/db_xref="CDD:197771"
gene 449106..449621
/locus_tag="RPD_0382"
/db_xref="GeneID:4020848"
CDS 449106..449621
/locus_tag="RPD_0382"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567521.1"
/db_xref="GI:91974862"
/db_xref="GeneID:4020848"
/translation="MALDTDLDPELAQPKLFSALLKPHRALSHKAFLVLMGVLGTISF
AVGVGFWTMGAWPVFGFFGLDLLAIYIAFRISFARGRASEEISITISELRVRRISHRG
HVAEWVLNPLWVRLEKIVHAEFGIEQLYLVSRGRRVSVASFLGAEEKASFANALTAAL
DAARRGPLVRH"
misc_feature 449166..449552
/locus_tag="RPD_0382"
/note="Integral membrane protein (DUF2244); Region:
DUF2244; pfam10003"
/db_xref="CDD:150652"
gene 449638..450570
/locus_tag="RPD_0383"
/db_xref="GeneID:4020849"
CDS 449638..450570
/locus_tag="RPD_0383"
/codon_start=1
/transl_table=11
/product="methylated-DNA--protein-cysteine
methyltransferase"
/protein_id="YP_567522.1"
/db_xref="GI:91974863"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR001497"
/db_xref="InterPro:IPR001680"
/db_xref="GeneID:4020849"
/translation="MVAARRATYIGSMMNLAAADHRLAKPGPRDAALADYDSVRRAIA
FISQKWKAQPTVEAIADASGLTPDELHHLFRRWAGLTPKAFMQALTLDHAKNLLRDSA
SVLDAALDSGLSGPGRLHDLFVTHEAMSPGEWKSGGAGLTLRYGFHPSPFGAAVVIAS
ERGLAGLAFADPGEEQAAFVDLQQRWPRATCIADQEFTAPFAQRVFDPVQWRSEQPLR
VVLIGTDFEVRVWETLLKIPLGRAVCYSDIANKIAAPKASRAVGAAVGKNPISFVVPC
HRALGKGGALTGYHWGLTRKQAMIGWEAGRLGAG"
misc_feature 449692..450042
/locus_tag="RPD_0383"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:32389"
misc_feature 450061..450552
/locus_tag="RPD_0383"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:30699"
misc_feature 450313..450546
/locus_tag="RPD_0383"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature order(450313..450318,450370..450375,450397..450399,
450406..450408,450412..450417,450421..450423,
450430..450435,450439..450441,450463..450465,
450478..450480,450499..450501)
/locus_tag="RPD_0383"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature order(450370..450372,450463..450468,450472..450474,
450544..450546)
/locus_tag="RPD_0383"
/note="active site"
/db_xref="CDD:119438"
gene 450661..452175
/locus_tag="RPD_0384"
/db_xref="GeneID:4020850"
CDS 450661..452175
/locus_tag="RPD_0384"
/EC_number="5.4.2.1"
/note="catalyzes the interconversion of 2-phosphoglycerate
and 3-phosphoglycerate"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="YP_567523.1"
/db_xref="GI:91974864"
/db_xref="InterPro:IPR000408"
/db_xref="InterPro:IPR005995"
/db_xref="InterPro:IPR006124"
/db_xref="InterPro:IPR011258"
/db_xref="GeneID:4020850"
/translation="MQSRRPVMLVILDGWGWREDPADNAVLQADTPTFDALWANGPHA
FLRTSGKSVGLPNGQMGNSEVGHLNIGAGRVVMQDLPRISDAIASGEIGQAPELLAFI
EKLRASGGTCHLMGLVSPGGVHSLQDHACALAKILAKAGVPTVLHAFTDGRDTPPKSA
VDDIARVRAELPPNVPIATVSGRYYAMDRDNRWERVSKAYGVIADADGPRFADADAVV
AAGYASGVNDEFIVPAVVGDYQGMRDGDGVLCFNFRADRVREILATLLDPTFTGFPRK
RVLKIAAAAGMTQYSTALDALMRTIFPPQSLVNGLGQVVAATGRHQLRMAETEKYPHV
TYFLNGGEEVPYPGEDRIMVPSPKVATYDLQPEMSAPELGDKAVQAIESGKYDMIILN
FANPDMVGHTGSLPAAIKAVETVDTQLGRIVAAIRQAGGALLVTADHGNCEMLRDPVT
GGPHTAHTTNPVPVLLVGHEGPLADGQLSDLAPTLLKLMDLPQPAEMTGQSLIG"
misc_feature 450661..452169
/locus_tag="RPD_0384"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:180079"
misc_feature 450673..452169
/locus_tag="RPD_0384"
/note="2,3-bisphosphoglycerate-independent
phosphoglycerate mutase; Region: pgm_bpd_ind; TIGR01307"
/db_xref="CDD:130374"
gene complement(452216..453031)
/locus_tag="RPD_0385"
/db_xref="GeneID:4020851"
CDS complement(452216..453031)
/locus_tag="RPD_0385"
/EC_number="1.3.1.26"
/note="catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_567524.1"
/db_xref="GI:91974865"
/db_xref="InterPro:IPR000846"
/db_xref="InterPro:IPR011770"
/db_xref="GeneID:4020851"
/translation="MSDMRLIVAGAGGRMGRALTRAISETKGVVLTGALEAPGSELLG
QDAGVLAGLPANGVKLSADLWTLSAGADGILDFTVPAATIANVAIAAQRGIVHVIGTT
GLSSSDNAVIKSVTDQAIVVKSGNMSLGVNLLAALTRRVAQSLDAGFDIEIVEMHHRA
KIDAPSGTALLLGEAAAAGRKVDLDDHSARGRDGVTGARKTGDIGFASLRGGTVTGDH
SVIFAGPYERIELAHKAEDRMIFAHGALKAAQWAHGKSPGLYSMMDVLGLAEF"
misc_feature complement(452228..453022)
/locus_tag="RPD_0385"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(452651..453022)
/locus_tag="RPD_0385"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(452234..452644)
/locus_tag="RPD_0385"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(453124..453435)
/locus_tag="RPD_0386"
/db_xref="GeneID:4020852"
CDS complement(453124..453435)
/locus_tag="RPD_0386"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567525.1"
/db_xref="GI:91974866"
/db_xref="InterPro:IPR010753"
/db_xref="GeneID:4020852"
/translation="MAKGYWVARMDVHDLDGYKRDYVAHNGTVFAKYGARFLTRGGTY
EAHEGPARSRNVVIEFKDYATALACYHSPEYQALIKARSPFAQGEIVIVEGYDGPQPQ
G"
misc_feature complement(453148..453435)
/locus_tag="RPD_0386"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5470"
/db_xref="CDD:35029"
gene complement(453455..454162)
/locus_tag="RPD_0387"
/db_xref="GeneID:4020853"
CDS complement(453455..454162)
/locus_tag="RPD_0387"
/EC_number="4.1.1.23"
/note="type 1 subfamily; involved in last step of
pyrimidine biosynthesis; converts orotidine 5'-phosphate
to UMP and carbon dioxide; OMP decarboxylase; OMPDCase;
OMPdecase"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_567526.1"
/db_xref="GI:91974867"
/db_xref="InterPro:IPR001754"
/db_xref="GeneID:4020853"
/translation="MAQADPADRDRLIVALDVPSVDAANAMIEKLGDSVGFYKIGYQL
AYAGGLPLVEKLARAGKKVFVDLKLHDIGNTVARGVESLNSLGATFLTVHAYPQTMKA
AVAARGDSGLKILAVTVLTSYDDSDLADAGYRFGVRDLVEARARQALAIGVDGLVCSP
EEAANLRGIVGPDMALVTPGIRPAGAAAGDQKRIMTPARAIAAGASHLVVGRPVMEAA
DPKQAAEAIVAEIAQAT"
misc_feature complement(453500..454129)
/locus_tag="RPD_0387"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature complement(order(453527..453532,453626..453628,
453800..453805,453959..453961,453965..453967,
454040..454042,454046..454048,454112..454114,
454118..454120))
/locus_tag="RPD_0387"
/note="active site"
/db_xref="CDD:73387"
misc_feature complement(order(453527..453529,453743..453745,
453803..453805,453848..453850,453875..453883,
453926..453931,453938..453943,453950..453955,
453959..453964,454031..454036,454040..454042))
/locus_tag="RPD_0387"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene complement(454169..454750)
/locus_tag="RPD_0388"
/db_xref="GeneID:4020854"
CDS complement(454169..454750)
/locus_tag="RPD_0388"
/codon_start=1
/transl_table=11
/product="NADPH-dependent FMN reductase"
/protein_id="YP_567527.1"
/db_xref="GI:91974868"
/db_xref="InterPro:IPR005025"
/db_xref="GeneID:4020854"
/translation="MSVVKILVIPGSLRTGSHNVRLAAAAAHELARADVDVTRLSLAD
YPLPIYDGDFEAKSGVPINAINLKRMIGAHHGVLIVSPEYNSAPPALLKNAIDWVSRV
EDSHETQGQVFRERAFALAAASEGKLGGARCLAALRLILSGCRAPVIPNQLALSFAHQ
AYDETDRLKLPADIAALQAMVRQLIDFAQHMMR"
misc_feature complement(454271..454738)
/locus_tag="RPD_0388"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
pfam03358"
/db_xref="CDD:202604"
gene complement(454899..455501)
/locus_tag="RPD_0389"
/db_xref="GeneID:4020855"
CDS complement(454899..455501)
/locus_tag="RPD_0389"
/codon_start=1
/transl_table=11
/product="putative phospholipid N-methyltransferase"
/protein_id="YP_567528.1"
/db_xref="GI:91974869"
/db_xref="InterPro:IPR000051"
/db_xref="GeneID:4020855"
/translation="MALQSTVRALKKQPRLDDEVRFLRSWIEKPLHMGAVMPSGKLLA
RTMAQYVDIDSTGPVIELGPGTGAITSALVEHGVEQKRLVLVEYNPSFCALLRERYPQ
ATVVQGDAYRLRDSLWDVLPEPATAVVSGLPLVTKPMLTRMKLIRDSFNLLEPGAPFV
QFTYSVAPPIPKSLPGVSTEASERIWMNIPPARVWVYRKG"
misc_feature complement(455031..455327)
/locus_tag="RPD_0389"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(455109..455111,455172..455180,
455238..455243,455298..455318))
/locus_tag="RPD_0389"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(455595..456755)
/locus_tag="RPD_0390"
/db_xref="GeneID:4020856"
CDS complement(455595..456755)
/locus_tag="RPD_0390"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_567529.1"
/db_xref="GI:91974870"
/db_xref="InterPro:IPR001305"
/db_xref="InterPro:IPR001623"
/db_xref="InterPro:IPR002939"
/db_xref="InterPro:IPR003095"
/db_xref="InterPro:IPR012724"
/db_xref="GeneID:4020856"
/translation="MTIESVAMSTTKRCYYETLEVERSADESTLKSAFRKLAMKWHPD
RNPGDASSEVKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGMGGGAGFGAGFASSFS
DIFEDLFGMAGQRGGRGTGRERGADLRYNMEISLEDAFKGKTAQIEIPVSVTCESCSG
IGAKAGTKPKTCSTCGGAGRVRQAQGFFTLERTCPSCQGRGQIIEDPCPSCTGSGRVT
RERTLSVNIPQGVEDGTRIRLAGEGEAGVRGGPPGDLYIFLSLASHAIFQRDGADLHC
RVPISMVTAALGGEFEVPTIERGKTKVKVPSGTQTGRRFRITGKGMPVLRSRQVGDMY
VQVAVETPQNLTKKQQELLAEFEKLSSGATQPEAAGFFTKVKDFFGSRANTP"
misc_feature complement(455616..456725)
/locus_tag="RPD_0390"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:182712"
misc_feature complement(456552..456716)
/locus_tag="RPD_0390"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(456573..456578,456585..456590,
456597..456599,456624..456632))
/locus_tag="RPD_0390"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(<456294..456380)
/locus_tag="RPD_0390"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature complement(order(456306..456323,456366..456368))
/locus_tag="RPD_0390"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(456111..456293)
/locus_tag="RPD_0390"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature complement(order(456123..456125,456132..456134,
456165..456167,456174..456176,456231..456233,
456240..456242,456282..456284,456291..456293))
/locus_tag="RPD_0390"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature complement(455721..456110)
/locus_tag="RPD_0390"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(455721..455735,455823..455834,
455895..455900,455907..455912))
/locus_tag="RPD_0390"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene complement(456864..458765)
/gene="dnaK"
/locus_tag="RPD_0391"
/db_xref="GeneID:4020857"
CDS complement(456864..458765)
/gene="dnaK"
/locus_tag="RPD_0391"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_567530.1"
/db_xref="GI:91974871"
/db_xref="InterPro:IPR001023"
/db_xref="InterPro:IPR012725"
/db_xref="InterPro:IPR013126"
/db_xref="GeneID:4020857"
/translation="MGKVIGIDLGTTNSCVAVMDGKNSKVIENAEGMRTTPSIVAISD
DGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAW
VEADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKI
AGLEVLRIINEPTAAALAYGLDKTKTGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNG
DTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEI
NLPFITADQSGPKHLTMKLTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVL
VGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPL
SLGIETLGGVFTRIIERNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKILG
QFDLMGIPPSPRGMPQIEVTFDIDANGIVNVSAKDKATSKEQQIRIQASGGLSDADID
KMVKDAEANASEDKRRREAVDAKNHADALVHSTEKALAEHGSKVEDSERRAIEDALSD
LRESLKSDDAEAIKTKTNTLAQASMKLGEAMYKQQAESDAAKHAAKDDIVDADFTEVD
DDKNNKKSA"
misc_feature complement(456885..458765)
/gene="dnaK"
/locus_tag="RPD_0391"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature complement(457674..458765)
/gene="dnaK"
/locus_tag="RPD_0391"
/note="Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins; Region:
HSPA9-like_NBD; cd11733"
/db_xref="CDD:212683"
misc_feature complement(order(457746..457748,457752..457760,
457959..457961,457971..457973,457980..457982,
458094..458096,458172..458174,458178..458183,
458253..458255,458556..458558,458727..458738))
/gene="dnaK"
/locus_tag="RPD_0391"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212683"
misc_feature complement(order(457926..457931,457935..457937,
457989..457991,457998..458003,458010..458012,
458370..458381,458586..458591,458595..458600,
458607..458609,458619..458621,458673..458675,
458682..458684))
/gene="dnaK"
/locus_tag="RPD_0391"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212683"
misc_feature complement(order(458124..458135,458256..458258,
458262..458267,458310..458315,458319..458324))
/gene="dnaK"
/locus_tag="RPD_0391"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212683"
gene 459160..460104
/locus_tag="RPD_0392"
/db_xref="GeneID:4020858"
CDS 459160..460104
/locus_tag="RPD_0392"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567531.1"
/db_xref="GI:91974872"
/db_xref="GeneID:4020858"
/translation="MRQIARLFAIALVFAAATPAVAADTVYPRGIRVGVTPMPGLTES
QAFLGFESAGHGVKVLLAELPGPAFGEVEAAFKAVPEGAMGKVKPESIETAAGKAYYT
AEDAVVGTDKVRRYSLIVPGSKMFSGYIAVQVADSEAQTYSDEAVKKMLTSVSVRQQV
PIEEQIAQMPFSIRETAGFKTVRTLAPGAALLFADGNEETGVEGAPFMVLGLIGSVPD
QTDARARFAQQAAATIPGLREARITTSEPMRIDGSAGFETRIEAVSGKDNTPVTVVQW
LRFGSASVAMRVIGSSPRDQWSEAFPRFRKVRDGLKGR"
gene complement(460221..460841)
/locus_tag="RPD_0393"
/db_xref="GeneID:4020859"
CDS complement(460221..460841)
/locus_tag="RPD_0393"
/note="with DnaK and DnaJ acts in response to hyperosmotic
and heat shock by preventing the aggregation of
stress-denatured proteins; may act as a thermosensor"
/codon_start=1
/transl_table=11
/product="heat shock protein GrpE"
/protein_id="YP_567532.1"
/db_xref="GI:91974873"
/db_xref="InterPro:IPR000740"
/db_xref="GeneID:4020859"
/translation="MTDSNGQKDNNQDQAQPADPVVSKPYIMPDDPEEGTNEALVREA
AEARDKMLRTLAEMENLRRRTAKEVADARTYGVSAFARDVLEIADNLQRALDAVPAEA
RANADAGLKGLIEGVELTERSLINALEKNGVKKFDPQGEKFDPNFQQAMYEVPDPSVP
AGTVVQVVQAGFMIGERVLRPALVGVSKGGAKPAPAAANGNEGGVA"
misc_feature complement(460290..460841)
/locus_tag="RPD_0393"
/note="Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: GrpE; COG0576"
/db_xref="CDD:30921"
misc_feature complement(460290..460712)
/locus_tag="RPD_0393"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature complement(order(460449..460451,460482..460484,
460491..460493,460560..460562,460572..460574,
460593..460595,460602..460604,460614..460616,
460656..460661,460668..460670,460680..460682,
460689..460694,460701..460706))
/locus_tag="RPD_0393"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature complement(order(460299..460301,460311..460313,
460338..460340,460386..460400,460407..460409,
460653..460655))
/locus_tag="RPD_0393"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene complement(460941..462029)
/gene="hrcA"
/locus_tag="RPD_0394"
/db_xref="GeneID:4020860"
CDS complement(460941..462029)
/gene="hrcA"
/locus_tag="RPD_0394"
/note="Negative regulator of class I heat shock genes
(grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock
induction of these operons"
/codon_start=1
/transl_table=11
/product="heat-inducible transcription repressor"
/protein_id="YP_567533.1"
/db_xref="GI:91974874"
/db_xref="InterPro:IPR002571"
/db_xref="InterPro:IPR006162"
/db_xref="GeneID:4020860"
/translation="MAHHDPIGLIAPNTGLAQLNERSRDIFRQIVESYLATGEPVGSR
NISRLISMPLSPASVRNVMADLEHLGLIYAPHTSAGRLPTELGLRFFVDALMQVGDLT
EPERQSIQAQLSSVGQAQTVEAALGEALTRLSGLTRAAAVVLTAKSNVRLKHLEFVRL
EPERALVILVAEDGQVENRVLALPPGVPSSALVEASNFLNARIRNRTLAEARLELETL
LSQDRTELDQLTQKVISAGIASWSGGDGEDRQLIVRGHANLLEDLHALEDLERVRLLF
DELETKRGVVDLLGRAERAEGVRIFIGSENKLFSLSGSSTIIAPYSDGAGHIVGVLGV
IGPTRLNYARVIPMVDYTARIVSQMLGG"
misc_feature complement(460947..461984)
/gene="hrcA"
/locus_tag="RPD_0394"
/note="heat-inducible transcription repressor;
Provisional; Region: hrcA; PRK00082"
/db_xref="CDD:178849"
gene 462181..462894
/gene="rph"
/locus_tag="RPD_0395"
/db_xref="GeneID:4020861"
CDS 462181..462894
/gene="rph"
/locus_tag="RPD_0395"
/EC_number="2.7.7.56"
/note="RNase PH; tRNA nucleotidyltransferase; forms
hexamers in Bacillus subtilis; phosphoroltic 3'-5'
exoribonuclease; involved in maturation of tRNA precursors
and removes terminal nucleotides near CCA acceptor arms of
mature tRNAs"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_567534.1"
/db_xref="GI:91974875"
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR002381"
/db_xref="GeneID:4020861"
/translation="MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLE
ERLPPWLKGQGRGWVTAEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIV
DLQALGERQITVDCDVLQADGGTRTASITGAWVALADCLGWMKTRNMIKGTVLRDNVA
AISCGIYNGTPVLDLDYAEDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALM
ALAQKGVTRLVDLQKMAVA"
misc_feature 462181..462891
/gene="rph"
/locus_tag="RPD_0395"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 462208..462888
/gene="rph"
/locus_tag="RPD_0395"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(462238..462252,462280..462282,462286..462288,
462292..462294,462298..462300,462304..462306,
462364..462366,462370..462372,462376..462393,
462397..462399,462406..462411,462433..462438,
462442..462447,462454..462456,462466..462468,
462475..462477,462517..462519,462523..462525,
462529..462531,462535..462543,462766..462780,
462784..462786,462790..462807,462811..462813,
462820..462825,462832..462837,462844..462846)
/gene="rph"
/locus_tag="RPD_0395"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(462373..462375,462436..462438,462541..462558,
462718..462720,462736..462738)
/gene="rph"
/locus_tag="RPD_0395"
/note="active site"
/db_xref="CDD:206767"
gene 462947..463579
/locus_tag="RPD_0396"
/db_xref="GeneID:4020862"
CDS 462947..463579
/locus_tag="RPD_0396"
/note="HAM1-like protein; Rec-dependent growth; RgdB;
yggV; it is suspected that this protein functions to
remove misincorporated bases such as xanthine or
hypoxanthine"
/codon_start=1
/transl_table=11
/product="putative deoxyribonucleotide triphosphate
pyrophosphatase"
/protein_id="YP_567535.1"
/db_xref="GI:91974876"
/db_xref="InterPro:IPR002637"
/db_xref="GeneID:4020862"
/translation="MHRRISGKLVIATHNPGKLAEMRELLAPYGIEAVSAGELGLGEP
DETGDSFRANARIKAEAAAQAAKLPAFADDSGLSVDALDGAPGIFSARWAGEGKDFNA
AMAQIERLLRERGATAPAQRGAHFVSALCVAWPDGHIEEVEARADGTLVWPPRGDAGF
GYDPMFLPDGHDRTFGEMSSIEKHGLPPLGLGLSHRARAFVKLAEICLGR"
misc_feature 462971..463561
/locus_tag="RPD_0396"
/note="NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against mutagenesis
by the base analog 6-N-hydroxylaminopurine (HAP) in E.
Coli and S. cerevisiae. A...; Region: HAM1; cd00515"
/db_xref="CDD:29953"
misc_feature order(462989..462991,462995..463000,463007..463009,
463169..463177,463214..463219,463322..463324,
463424..463426,463430..463435,463529..463534)
/locus_tag="RPD_0396"
/note="active site"
/db_xref="CDD:29953"
misc_feature order(463082..463090,463190..463195,463202..463204,
463211..463213,463220..463222)
/locus_tag="RPD_0396"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29953"
gene 463569..464726
/locus_tag="RPD_0397"
/db_xref="GeneID:4020863"
CDS 463569..464726
/locus_tag="RPD_0397"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_567536.1"
/db_xref="GI:91974877"
/db_xref="InterPro:IPR004559"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010723"
/db_xref="GeneID:4020863"
/translation="MGADPDKAFGVYVHWPFCLSKCPYCDFNSHVRHAAIDEARFARA
FAREIAATAARIGPRDVSSIFLGGGTPSLMQPSTVGAILDAIGKHWRVTPDAEVSLEA
NPTSVEATRFRGYRAAGVNRVSLGVQALDDASLKTLGRLHTAQEAMDAVAIARSAFDR
YSFDLIYARPGQTPAMWEAELRRAIGEAAEHLSLYQLTIEAETPFFALHRAGKLQTPD
ESASRALYDVTQSVCAELGLPAYEISNHARPGAECKHNLVYWRGQEYAGIGPGAHGRL
DIGGTRYAIATEKRPESWMMRVEATGTGVITDDRLNSEERADEFLLMGLRLAEGIDPR
RYQALAGRSLDPSRIALLCAEGAIVVDADGRLRVTQAGFPVLDAVVADLAA"
misc_feature 463581..464690
/locus_tag="RPD_0397"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09057"
/db_xref="CDD:181629"
misc_feature 464499..464690
/locus_tag="RPD_0397"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(464836..466035)
/locus_tag="RPD_0398"
/db_xref="GeneID:4020864"
CDS complement(464836..466035)
/locus_tag="RPD_0398"
/codon_start=1
/transl_table=11
/product="extracellular ligand-binding receptor"
/protein_id="YP_567537.1"
/db_xref="GI:91974878"
/db_xref="GeneID:4020864"
/translation="MAGLREPNTKSLRTTRRTAIGLILGTPLLGACSGVQQTLNNQFG
QQPPPDAAQQQSQSVGTGRVKVGLVLPLSAAGNAGVAAQSMKNAAEMALAEFNNPDVQ
LLVKDDAGNPQGAQSATQQALDEGAEIILGPLFAQSVPAAAQLTRARGISMIAFSTDS
SVAGRGVYLLSFLPESDVNRIIGYAASVGKRSYAALLPDNAYGGVVEAAFKQVVGTKG
GRIAAFEKYGADRAAAARTIAQALAGADSLLLADDGDALAGVSDALTAAGVDLRRLQL
LGTGLWDNPRVFATPALQGGLYAAPDPSGFRSFSGRYRARFGQDPVRTATLAYDAVAL
VAALARTQATRRFSSDVLTNPSGFAGIDGLFRFRADGSNERGLAVMRVATGGAQAVAG
SPKSFGA"
misc_feature complement(<465070..465846)
/locus_tag="RPD_0398"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature complement(464896..465843)
/locus_tag="RPD_0398"
/note="Periplasmic binding component of lipoprotein LppC,
an immunodominant antigen; Region:
PBP1_YraM_LppC_lipoprotein_like; cd06339"
/db_xref="CDD:107334"
misc_feature complement(order(465430..465432,465562..465567,
465628..465636))
/locus_tag="RPD_0398"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107334"
gene 466232..467185
/locus_tag="RPD_0399"
/db_xref="GeneID:4020865"
CDS 466232..467185
/locus_tag="RPD_0399"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567538.1"
/db_xref="GI:91974879"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR008189"
/db_xref="GeneID:4020865"
/translation="MRAKAAPTIPSTTESEPESRAFLVAGQKLIAPRAAPGLHLVATP
IGNLGDITLRALETLAGVDVIACEDTRITHRLTERYGISAQLKPYHEHNAAQARPKIL
KKLAQGGSVALVSDAGTPLISDPGYKLVREAYDAGHDVVALPGASAVLAALALAALPT
DRFFFDGFLPAKQGARRSRLSELAAIDATLVLFEAGSRIHNSLRDLAEVLGGREAAIC
RELTKLHQEVRRAPLTTLAETAETLETRGEFVVVIGPPDPGARMMTQDALDTWLRDAL
QRDSVKDAVAQAVDISGRPRREIYARALELARQREADDGQD"
misc_feature 466334..467131
/locus_tag="RPD_0399"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 466343..466996
/locus_tag="RPD_0399"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(466364..466366,466580..466588,466595..466600,
466670..466675,466808..466810,466883..466885,
466889..466894,466973..466981)
/locus_tag="RPD_0399"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(466382..466393,466397..466399,466586..466603,
466610..466615,466619..466624,466655..466657,
466661..466672,466676..466681,466688..466693,
466718..466732)
/locus_tag="RPD_0399"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene 467172..467567
/locus_tag="RPD_0400"
/db_xref="GeneID:4020866"
CDS 467172..467567
/locus_tag="RPD_0400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567539.1"
/db_xref="GI:91974880"
/db_xref="InterPro:IPR003509"
/db_xref="GeneID:4020866"
/translation="MAKTRSPSTPPAPERVAAFQTGISAETRAAAFLMAKGYRILARR
FKTPYGEIDIVAQRRKLIAFVEVKARARLDDAAYALTPRQQQRIIAAAEAWLVANPDH
ATYELRFDAMLVAPKRLPQHLPAAFDASP"
misc_feature 467214..467558
/locus_tag="RPD_0400"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:183560"
gene 467651..468592
/locus_tag="RPD_0401"
/db_xref="GeneID:4020867"
CDS 467651..468592
/locus_tag="RPD_0401"
/EC_number="6.3.2.3"
/note="catalyzes the second step in the glutathione
biosynthesis pathway, where it synthesizes ATP +
gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate +
glutathione"
/codon_start=1
/transl_table=11
/product="glutathione synthetase"
/protein_id="YP_567540.1"
/db_xref="GI:91974881"
/db_xref="InterPro:IPR004215"
/db_xref="InterPro:IPR004218"
/db_xref="InterPro:IPR006284"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:4020867"
/translation="MTLKVAVQMDPIARINIRGDSTFAMLLEAQKRGHAISYYTPDKL
SLRGTDVVASVQRLSVRDQEGDHFTLGEPTRVDMRSFDVVLLRQDPPFDLAYITSTHL
LERIHPHTLVVNDPISVRNAPEKLFVMDFAELMPPTLISRDLNEINSFRAEHGAVVMK
PLHGHGGAAVFRVLPQDINFGSLYDMFAVTFREPWVIQRFLPEVKHGDKRIILVDGEF
AGAVNRVPAADDLRSNMVRGGAAAATDLSERERTICATLAPKLRERGLLLVGIDVIDG
YLTEINVTSPTGIRAVARLGGPDIAARVWDVIEQKRS"
misc_feature 467654..468589
/locus_tag="RPD_0401"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature 467657..468010
/locus_tag="RPD_0401"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature 468020..468538
/locus_tag="RPD_0401"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene 468696..469424
/locus_tag="RPD_0402"
/db_xref="GeneID:4020868"
CDS 468696..469424
/locus_tag="RPD_0402"
/codon_start=1
/transl_table=11
/product="regulatory protein LuxR"
/protein_id="YP_567541.1"
/db_xref="GI:91974882"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR005143"
/db_xref="GeneID:4020868"
/translation="MSADEGNQWGRRALEFVDAADRLDGPSLIRQFETHIASGGFSAY
IMAGLPSPGAGLADLTLANGWPRGWFELYVRENYIAVDPVPRHGATTVQPFEWSEAPY
DRKQNRAAHKVMTHATEFGLVRGYCIPLHYDEGGAVISMAGDQPDLDPVAKGAMQLIG
VYAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIEA
SKKLNAVNRTAAVAKALAFGLIKL"
misc_feature 468774..469196
/locus_tag="RPD_0402"
/note="Autoinducer binding domain; Region: Autoind_bind;
pfam03472"
/db_xref="CDD:202654"
misc_feature 469233..469400
/locus_tag="RPD_0402"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(469236..469244,469281..469289,469311..469316,
469320..469325,469329..469343,469374..469376)
/locus_tag="RPD_0402"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(469269..469271,469275..469277,469281..469283,
469374..469382,469389..469391,469398..469400)
/locus_tag="RPD_0402"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 469502..470158
/locus_tag="RPD_0403"
/db_xref="GeneID:4020869"
CDS 469502..470158
/locus_tag="RPD_0403"
/codon_start=1
/transl_table=11
/product="autoinducer (acylhomoserine lactone) synthase"
/protein_id="YP_567542.1"
/db_xref="GI:91974883"
/db_xref="InterPro:IPR001690"
/db_xref="GeneID:4020869"
/translation="MEVHVVRRENREAYADLIERQFRIRHQIYVVERKWTELDRADGR
EIDQFDTDETVYLIGMQNGEIVAGMRMVPTSSPTLLSDIFPQLSLDRPVRRPDVYELS
RIYVVPNKRGEHAGPRAEAVIQAAAMEYGLSIGLSAFTIVLETWWLPRLLDQGWRARP
LGLPQDIDGMSTTAVLVDVDDDAWLEICARRSVPGPALHWLGLESVNRNPLPNPMELA
"
misc_feature 469508..470095
/locus_tag="RPD_0403"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00357"
/db_xref="CDD:213096"
gene 470155..470379
/locus_tag="RPD_0404"
/db_xref="GeneID:4020870"
CDS 470155..470379
/locus_tag="RPD_0404"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567543.1"
/db_xref="GI:91974884"
/db_xref="GeneID:4020870"
/translation="MTTQENTSLGQTVPPGTSGRAKSVSIETLATTINRAIEQAEELG
IPSAAQLLMMARLEVDLTEIALETKLKKSA"
gene 470489..472027
/locus_tag="RPD_0405"
/db_xref="GeneID:4020871"
CDS 470489..472027
/locus_tag="RPD_0405"
/codon_start=1
/transl_table=11
/product="Mg chelatase-like protein"
/protein_id="YP_567544.1"
/db_xref="GI:91974885"
/db_xref="InterPro:IPR000408"
/db_xref="InterPro:IPR000523"
/db_xref="InterPro:IPR001208"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004482"
/db_xref="GeneID:4020871"
/translation="MVQHVSTVAFEGIEARAVDVQVQVSPGLPAFAVVGLADKAVSEA
RERVRSALIASGLALPARRITVNLAPADLPKEGSHYDLPIALGLMAAIGAIPADALAG
FTVLGELGLDGSIAPVAGVLPAAIAANARDEGLICPAACGSEAAWASPDIQIIAARSL
IQIANHFKGTQLLSRPQPRVHETESSTLDLRDIKGQESAKRALEIAAAGGHHLLMVGS
PGAGKSMLAARLPSILPPLSPGELLEVSMIASVAGEIRDGALTARRPFRAPHHSASMA
ALTGGGVKARPGEISLAHQGVLFLDELPEFDPRVLDSLRQPLEIGEVAVSRANHRVTY
PARVMLVAAMNPCRCGRAYEPGYACKRGQVDRCSADYQSRISGPLMDRIDLRIEVPAV
TAADLILPPAAEGSAEVAARVAAARDLQRERYAAIGLPQIRTNAEAPASTLEATAQPD
SAGLKLLRDAAETMRLSARGYHRVLRVARTLADLDGAEIIGRLHLAEALSYRALGEDI
KRAA"
misc_feature 470528..471997
/locus_tag="RPD_0405"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature 470546..470908
/locus_tag="RPD_0405"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 471068..471658
/locus_tag="RPD_0405"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 471137..471160
/locus_tag="RPD_0405"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(471140..471163,471389..471391,471590..471592)
/locus_tag="RPD_0405"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 471377..471394
/locus_tag="RPD_0405"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 471632..471634
/locus_tag="RPD_0405"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 471746..471994
/locus_tag="RPD_0405"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene 472132..472617
/locus_tag="RPD_0406"
/db_xref="GeneID:4020872"
CDS 472132..472617
/locus_tag="RPD_0406"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567545.1"
/db_xref="GI:91974886"
/db_xref="GeneID:4020872"
/translation="MLRFRVLASTLPLLAMGLFARSELIAGPQPCIAVGDHAVQIAPA
SWLAHLRVGFTEDPARATIRVQIVDSPDAADFAVTDDAGNTDSGACALTPETRLVGIA
AHPASDEPLIYLTYDAGGGADYRIFVSSNSFTLRQAAALLVGASDRNAPIATASIGSR
S"
gene 472732..474684
/locus_tag="RPD_0407"
/db_xref="GeneID:4020873"
CDS 472732..474684
/locus_tag="RPD_0407"
/codon_start=1
/transl_table=11
/product="ATPase-like ATP-binding protein"
/protein_id="YP_567546.1"
/db_xref="GI:91974887"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4020873"
/translation="MMRSLRIKSRRRVFARRFPRLVFMLRSLVVFTAAFCGAYGFIVG
SRAESSGYNPHTFAIGASFLFALACLGLAVQSMRLRWMRRSLHAVALHNEALADRNWE
LKDAEERARTLLESRGELLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLL
DTTLTPEQATYVRAVKTSGDALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAE
LLAPRAQARAIEIAAYVDERLPAQVIGDAARLRQVLLNLAGNAIKFTSSGGVALIAEP
GERDGEIDLLIRDTGIGIAPEAQARVFREFEQADDGIARNYGGTGLGLSISERIVSGM
GGRIVLHSRPGIGTTFTVSIPLAAADDPAAAMAFKAPDLAGQTILIAAPQTIEAQLVA
HRLQRWNAETRVVSDLAAARVLLPDHAWSAILIDAGFGVTEAAALALDAKLHATQRIV
MLNPSIRAELLPKLPAAFTGYLVKPLRAASLAARLGGALIDTAAPGIADSDTPGLAAP
DQTAQVGRRLSILVAEDNDINALLIRSLLTKLGHDAVIADDGEQALQSWRAASADGAP
FDLVLMDVQMPLLDGIAASRQIRTYEAERQSRRTPILALTANSLAEDRAACLAAGMDG
FLVKPLDRDRLVGVLADITSSRPVIA"
misc_feature 473125..473313
/locus_tag="RPD_0407"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(473140..473142,473152..473154,473164..473166,
473173..473175,473185..473187,473194..473196,
473242..473244,473254..473256,473263..473265,
473275..473277,473284..473286,473296..473298)
/locus_tag="RPD_0407"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 473158..473160
/locus_tag="RPD_0407"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 473479..473793
/locus_tag="RPD_0407"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(473497..473499,473509..473511,473518..473520,
473590..473592,473596..473598,473602..473604,
473608..473613,473692..473703,473749..473751,
473755..473757,473770..473775,473779..473781)
/locus_tag="RPD_0407"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 473509..473511
/locus_tag="RPD_0407"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(473602..473604,473608..473610,473692..473694,
473698..473700)
/locus_tag="RPD_0407"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 474289..474639
/locus_tag="RPD_0407"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 474292..474657
/locus_tag="RPD_0407"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(474301..474306,474448..474450,474472..474474,
474547..474549,474604..474606,474613..474618)
/locus_tag="RPD_0407"
/note="active site"
/db_xref="CDD:29071"
misc_feature 474448..474450
/locus_tag="RPD_0407"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(474457..474462,474466..474474)
/locus_tag="RPD_0407"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 474613..474621
/locus_tag="RPD_0407"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 474891..475904
/locus_tag="RPD_0408"
/db_xref="GeneID:4020874"
CDS 474891..475904
/locus_tag="RPD_0408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567547.1"
/db_xref="GI:91974888"
/db_xref="GeneID:4020874"
/translation="MRTGRASADSVACGREDPMQTDHLARPKKFIKLLRPEMAGAAAQ
TAITWFKPALRNGDHGKPIAKPALTPATLGRLGALEVRLAQKKQDIKRAQKLRYRVFY
QNGTAIADAATLLARRDKDAFDRICDHLLVVDHAAKPSLSGKQPVVGTYRLLRQEIAD
RHGGFYTDSEFNIGGMIARHPELRFLELGRSCVLPPYRNKRTVELLWHGIWSYVRQHR
VDVMIGCASFDGTDPDRLALPLSFLHHYASAPEAWHARAHRSRYVEMNRMPKEAVNQK
AALRELPPLIKGYLRLGATIGEGAVIDHQFGTTDVLIIMPVSAISARYIEHFGADATR
HAA"
misc_feature 475041..475892
/locus_tag="RPD_0408"
/note="Putative hemolysin [General function prediction
only]; Region: COG3176"
/db_xref="CDD:32989"
gene complement(476038..476994)
/locus_tag="RPD_0409"
/db_xref="GeneID:4020875"
CDS complement(476038..476994)
/locus_tag="RPD_0409"
/EC_number="2.7.1.33"
/note="catalyzes the formation of
(R)-4'-phosphopantothenate in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_567548.1"
/db_xref="GI:91974889"
/db_xref="InterPro:IPR004566"
/db_xref="InterPro:IPR006083"
/db_xref="GeneID:4020875"
/translation="MDARSELHHYNPYRVFSRSEWANLRQDTPMTLDLAEVSTLRSLH
DRLDITEVEEIYLPMSRLLSIHVGAMQQLYYAQRRFLGVVERKMPYIIGVAGSVAVGK
STTARVLQALLARWSPRPKVDLITTDGFLHPNALLERAGLMQKKGFPESYDLPALLAF
LSDIKSGRRKVRAPIYSHLTYDIVPNKFAVVDRPDILIVEGVNVLQTGRLPRDGKAVP
VVSDFFDFSVYIDADEPVLRDWYIRRFLALRDTAFHDPRSYFHRYAPLSDEEATATAI
AIWERTNLANLEDNILPTRPRATLILKKGADHVVDSVALRRL"
misc_feature complement(476041..476985)
/locus_tag="RPD_0409"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:180082"
misc_feature complement(476050..476724)
/locus_tag="RPD_0409"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point
in...; Region: PanK; cd02025"
/db_xref="CDD:30198"
misc_feature complement(order(476071..476073,476083..476085,
476263..476265,476275..476277,476680..476691,
476698..476700))
/locus_tag="RPD_0409"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(476071..476073,476251..476253,
476263..476265,476461..476463,476674..476676,
476686..476691))
/locus_tag="RPD_0409"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(476395..476397,476686..476688))
/locus_tag="RPD_0409"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:30198"
gene complement(477185..477508)
/gene="hisE"
/locus_tag="RPD_0410"
/db_xref="GeneID:4020876"
CDS complement(477185..477508)
/gene="hisE"
/locus_tag="RPD_0410"
/EC_number="3.6.1.31"
/note="catalyzes the formation of 1-(5-phosphoribosyl)-AMP
from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosyl-ATP pyrophosphatase"
/protein_id="YP_567549.1"
/db_xref="GI:91974890"
/db_xref="InterPro:IPR001604"
/db_xref="InterPro:IPR008179"
/db_xref="GeneID:4020876"
/translation="MARFTLHDLAATIDARAASGGEASYTKKLLDKGAEHCAKKFGEE
AVELVIATVENDRGHLIAEAADVLFHMLVLLKARGVKLDEVEAALAQRTSMSGLEEKA
SRKRD"
misc_feature complement(477242..477493)
/gene="hisE"
/locus_tag="RPD_0410"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase (HisIE or
PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like;
cd11534"
/db_xref="CDD:212141"
misc_feature complement(order(477311..477313,477320..477322,
477368..477370,477377..477379))
/gene="hisE"
/locus_tag="RPD_0410"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212141"
gene complement(477564..478331)
/locus_tag="RPD_0411"
/db_xref="GeneID:4020877"
CDS complement(477564..478331)
/locus_tag="RPD_0411"
/note="catalyzes the conversion of
5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-
1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine
to imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamideribonucleotide and glutamate;
the HisF subunit acts as a cyclase"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisF"
/protein_id="YP_567550.1"
/db_xref="GI:91974891"
/db_xref="InterPro:IPR003009"
/db_xref="InterPro:IPR004651"
/db_xref="InterPro:IPR006062"
/db_xref="GeneID:4020877"
/translation="MFKVRVIPCLDVKDGRVVKGVNFVDLRDAGDPVEAAIAYDAAGA
DELCFLDITATHENRGIMLDVVRRTAEACFMPVTVGGGVRTVDDIKTLLRSGADKVSI
NSAAVARREFVKEAAEKFGDQCIVVAIDAKRVPGRDRWEIFTHGGRKGTGIDAIEFAQ
EVVSLGAGEILLTSMDRDGTRSGFDIPLTRAIADSVQVPVIASGGVGDLDHLVDGIRE
GHATAVLAASIFHFGEYTIREAKDHMVRAGLPMRLDP"
misc_feature complement(477600..478319)
/locus_tag="RPD_0411"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature complement(477624..478319)
/locus_tag="RPD_0411"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature complement(order(477648..477653,477717..477725,
477795..477800,477813..477815,477894..477896,
477942..477944,477948..477950,478020..478025,
478086..478088,478182..478184,478275..478277))
/locus_tag="RPD_0411"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature complement(order(477666..477668,477741..477743,
477825..477827,477963..477965,478035..478040,
478047..478049,478104..478106,478110..478112,
478119..478121,478131..478133,478197..478199,
478212..478214))
/locus_tag="RPD_0411"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene complement(478339..479076)
/locus_tag="RPD_0412"
/db_xref="GeneID:4020878"
CDS complement(478339..479076)
/locus_tag="RPD_0412"
/EC_number="5.3.1.16"
/note="catalyzes the formation of
5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-
(5-phosphoribosyl)imidazole-4-carboxamide from
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide"
/codon_start=1
/transl_table=11
/product="1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase"
/protein_id="YP_567551.1"
/db_xref="GI:91974892"
/db_xref="InterPro:IPR003009"
/db_xref="InterPro:IPR006062"
/db_xref="InterPro:IPR006063"
/db_xref="GeneID:4020878"
/translation="MILFPAIDLKNGQCVRLEQGDMARATVFNLDPAAQARSFAAQGF
QYLHVVDLDGAFAGKPVNAQAVESMLKVVSMPVQLGGGIRDLKTVEGWLAKGISRVII
GTAAVRDPALVKQAAKKFPGRVAVGLDARDGKVAVEGWAESSQVTALEIAQRFEDAGV
AAIIFTDIARDGLLKGINWEATIALAEAVSIPVIASGGLASIDDVKALLSPRANKLEG
AIAGRALYDGRLDPAEALALIDAARAA"
misc_feature complement(478390..479076)
/locus_tag="RPD_0412"
/note="Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase [Amino acid
transport and metabolism]; Region: HisA; COG0106"
/db_xref="CDD:30455"
misc_feature complement(478390..479073)
/locus_tag="RPD_0412"
/note="HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA;
cd04732"
/db_xref="CDD:73394"
misc_feature complement(order(478690..478692,478933..478935,
479053..479055))
/locus_tag="RPD_0412"
/note="catalytic residues [active]"
/db_xref="CDD:73394"
gene complement(479255..479905)
/gene="hisH"
/locus_tag="RPD_0413"
/db_xref="GeneID:4020879"
CDS complement(479255..479905)
/gene="hisH"
/locus_tag="RPD_0413"
/note="with HisF IGPS catalyzes the conversion of
phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide
ribonucleotide phosphate and glutamine to
imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamide ribonucleotide, and
glutamate in histidine biosynthesis; the HisH subunit
provides the glutamine amidotransferase activity that
produces the ammonia necessary to HisF for the synthesis
of imidazole-glycerol phosphate and
5-aminoimidazol-4-carboxamide ribonucleotide"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisH"
/protein_id="YP_567552.1"
/db_xref="GI:91974893"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR010139"
/db_xref="InterPro:IPR011702"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:4020879"
/translation="MSVAIIDYGSGNLHSAAKAFERAARSMEVPEKIIVTRDPEQVFR
SDRVVLPGVGAFADCRKGLDAVDGMVEALTETVRVKARPFFGICVGMQLMATRGKEHV
TTDGLNWIPGDVVKITPNQEELKIPHMGWNTLDVLREHPVLERLPLGPNGLHAYFVHS
FHLAAQSEGDVLARADYGGPVTAVVGRDTAIGTQFHPEKSQRFGLALISNFLKWKP"
misc_feature complement(479258..479905)
/gene="hisH"
/locus_tag="RPD_0413"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13146"
/db_xref="CDD:183871"
misc_feature complement(479270..479899)
/gene="hisH"
/locus_tag="RPD_0413"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in imidazole glycerol phosphate synthase (IGPS);
Region: GATase1_IGP_Synthase; cd01748"
/db_xref="CDD:153219"
misc_feature complement(order(479312..479314,479318..479320,
479636..479650,479744..479767))
/gene="hisH"
/locus_tag="RPD_0413"
/note="putative active site [active]"
/db_xref="CDD:153219"
misc_feature complement(479744..479767)
/gene="hisH"
/locus_tag="RPD_0413"
/note="oxyanion strand; other site"
/db_xref="CDD:153219"
misc_feature complement(order(479312..479314,479318..479320,
479642..479644))
/gene="hisH"
/locus_tag="RPD_0413"
/note="catalytic triad [active]"
/db_xref="CDD:153219"
gene complement(479902..480420)
/locus_tag="RPD_0414"
/db_xref="GeneID:4020880"
CDS complement(479902..480420)
/locus_tag="RPD_0414"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_567553.1"
/db_xref="GI:91974894"
/db_xref="GeneID:4020880"
/translation="MPVFTVHAPPPVDDERRASPDRFVFVRDGFYGWAFVFGPLWLLT
RRLWLALFGYLVVAVAVTFALTALRVGAGPRFAVMLLMALLLGLEAASLWRWTLSRRG
WRQLDVVVGDDLPGAERRFFDRWSSRQSNPVSFSLPMDRGAPPPTRSVPMPSSSIYGD
IVGSFPRPGSSR"
misc_feature complement(<480304..480420)
/locus_tag="RPD_0414"
/note="Protein of unknown function (DUF2628); Region:
DUF2628; pfam10947"
/db_xref="CDD:204564"
gene complement(480449..481042)
/gene="hisB"
/locus_tag="RPD_0415"
/db_xref="GeneID:4020881"
CDS complement(480449..481042)
/gene="hisB"
/locus_tag="RPD_0415"
/EC_number="4.2.1.19"
/note="catalyzes the dehydration of
D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to
3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine
biosynthesis"
/codon_start=1
/transl_table=11
/product="imidazoleglycerol-phosphate dehydratase"
/protein_id="YP_567554.1"
/db_xref="GI:91974895"
/db_xref="InterPro:IPR000807"
/db_xref="GeneID:4020881"
/translation="MRTATIKRKTKETDIEVTVNLDGAGVSNAATGIGFFDHMLDLLA
KHSRIDITVKAVGDLHVDFHHTTEDVGIALGQAVKQALGNMAGINRYASMLMPMDETL
TRVVIDVSGRPFLVFKADFPRDKIGEFDTELVREWFQAFAMNAGVTLHVETLYGENSH
HIAESCFKGLARALRAAVAIDPQAAGEVPSTKGQLGG"
misc_feature complement(480458..481042)
/gene="hisB"
/locus_tag="RPD_0415"
/note="imidazoleglycerol-phosphate dehydratase; Validated;
Region: hisB; PRK00951"
/db_xref="CDD:179179"
misc_feature complement(480458..481033)
/gene="hisB"
/locus_tag="RPD_0415"
/note="Imidazoleglycerol-phosphate dehydratase; Region:
IGPD; cd07914"
/db_xref="CDD:153419"
misc_feature complement(order(480551..480553,480560..480565,
480635..480637,480707..480709,480746..480751,
480773..480775,480839..480841,480848..480853,
480905..480910,480917..480919,480929..480931,
481007..481009))
/gene="hisB"
/locus_tag="RPD_0415"
/note="putative active site pocket [active]"
/db_xref="CDD:153419"
misc_feature complement(order(480560..480574,480635..480640,
480647..480649,480653..480655,480662..480676,
480848..480853,480857..480865,480929..480931,
480938..480943))
/gene="hisB"
/locus_tag="RPD_0415"
/note="4-fold oligomerization interface [polypeptide
binding]; other site"
/db_xref="CDD:153419"
misc_feature complement(order(480551..480553,480560..480565,
480635..480637,480839..480841,480848..480853,
480929..480931))
/gene="hisB"
/locus_tag="RPD_0415"
/note="metal binding residues [ion binding]; metal-binding
site"
/db_xref="CDD:153419"
misc_feature complement(order(480500..480502,480518..480520,
480527..480529,480581..480583,480587..480589,
480593..480595,480599..480601,480701..480703,
480707..480709,480719..480727,480737..480742,
480746..480754,480758..480766,480770..480772,
480776..480778))
/gene="hisB"
/locus_tag="RPD_0415"
/note="3-fold/trimer interface [polypeptide binding];
other site"
/db_xref="CDD:153419"
gene 481225..481806
/locus_tag="RPD_0416"
/db_xref="GeneID:4020882"
CDS 481225..481806
/locus_tag="RPD_0416"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease peptidase subunit"
/protein_id="YP_567555.1"
/db_xref="GI:91974896"
/db_xref="InterPro:IPR001353"
/db_xref="GeneID:4020882"
/translation="MNMYSASGEGSPQGSAQVWHGTTILTVRKGGKVVIGGDGQVSIG
QTVIKANAKKVRKLGKGDVIGGFAGATADAFTLFERLEAKLEQYPGQLTRAAVELAKD
WRTDRYLRRLEAMMIVADKDVSLVLTGTGDVLEPEYGVMAIGSGGNYALAAARALADT
DQDAETIVRKALDIAADICVYTNRNLTLETLSA"
misc_feature 481288..481797
/locus_tag="RPD_0416"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature order(481288..481290,481336..481338,481342..481344,
481384..481386,481657..481659)
/locus_tag="RPD_0416"
/note="active site"
/db_xref="CDD:48442"
misc_feature order(481357..481365,481534..481536,481615..481617,
481627..481629,481666..481671,481675..481677,
481699..481701,481732..481734,481744..481746,
481753..481758,481762..481764)
/locus_tag="RPD_0416"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 481803..482288
/locus_tag="RPD_0417"
/db_xref="GeneID:4020883"
CDS 481803..482288
/locus_tag="RPD_0417"
/codon_start=1
/transl_table=11
/product="GCN5-like N-acetyltransferase"
/protein_id="YP_567556.1"
/db_xref="GI:91974897"
/db_xref="InterPro:IPR000182"
/db_xref="GeneID:4020883"
/translation="MTGIYQFRPFTADDLPLMASWLKRPHMAEWWGDPEEQLAGLRED
LDQPAMDQYLVITGGTPFAYMQCYRLTAWNDGFGPQPDGTRGIDQSIGDPEMINRGHG
SAFIRQFTDALLAAGTPRIVTDPSPGNGRAIRCYEKAGFRRDRVVDTPDGPALLMVQE
T"
misc_feature 481821..482273
/locus_tag="RPD_0417"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_8; pfam13523"
/db_xref="CDD:205701"
misc_feature 481824..481946
/locus_tag="RPD_0417"
/note="Siderophore biosynthesis protein domain; Region:
AlcB; smart01006"
/db_xref="CDD:198074"
misc_feature 481974..482228
/locus_tag="RPD_0417"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene 482285..483586
/gene="hslU"
/locus_tag="RPD_0418"
/db_xref="GeneID:4020884"
CDS 482285..483586
/gene="hslU"
/locus_tag="RPD_0418"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit HslU"
/protein_id="YP_567557.1"
/db_xref="GI:91974898"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004491"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:4020884"
/translation="M 