LOCUS NC_008639 3133902 bp DNA circular BCT 22-DEC-2012
DEFINITION Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
ACCESSION NC_008639
VERSION NC_008639.1 GI:119355857
DBLINK Project: 58133
BioProject: PRJNA58133
KEYWORDS .
SOURCE Chlorobium phaeobacteroides DSM 266
ORGANISM Chlorobium phaeobacteroides DSM 266
Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
Chlorobium/Pelodictyon group; Chlorobium.
REFERENCE 1 (bases 1 to 3133902)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chlorobium phaeobacteroides DSM 266
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3133902)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3133902)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000492.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634474
Source DNA and bacteria available from Donald A. Bryant
(dab14@psu.edu)
Bacteria available from DSMZ: DSM 266
Contacts: Donald A. Bryant (dab14@psu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3133902
/organism="Chlorobium phaeobacteroides DSM 266"
/mol_type="genomic DNA"
/strain="DSM 266"
/db_xref="taxon:290317"
gene 1..1473
/gene="dnaA"
/locus_tag="Cpha266_0001"
/db_xref="GeneID:4568532"
CDS 1..1473
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_910502.1"
/db_xref="GI:119355858"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4568532"
/translation="MSEATNRVPEVKIPSNLHKPILLEQQVWDSCLEAIREKINPLAY
KTWFSPIKPVNFSGSELTIQVPSQFFYEWIEENYSSFLKQALKDVIGSEAKLMYSIVM
DKSQGQPVTIELPHQSTPLSACSSDSSESTQIKNKEAFEKNLQRFETHLNPKYVFETL
IRGDCNSLAFAASKSVAQNPGLNAFNPLVIYGGVGLGKTHMMQAIGNSVRKNCLSEKV
LYVSSEKFAVDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFFAGKEKTQEEIFHIFNT
LHQTNKQIILSSDRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLEQSG
VNLDESVIEFIATNVTENVRELEGCIVKLLAAQSLDNREIDLHFTKSTLKDIIRHTTK
QLTLDTIEKAVCSFFAITPNDLKGKSKKKEIATGRQIAMYLAKNLTESSLKTIGLHFG
GRDHSTVIHAVNTVGNRMEQQSDERKKIEELKKRIEILSM"
misc_feature 70..1419
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 73..264
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 544..930
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 574..597
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(577..600,763..765,865..867)
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 751..768
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 901..903
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1186..1419
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1255..1257,1279..1284,1303..1305,1321..1329,
1354..1368,1375..1377,1384..1389)
/gene="dnaA"
/locus_tag="Cpha266_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1895..3025
/locus_tag="Cpha266_0002"
/db_xref="GeneID:4568533"
CDS 1895..3025
/locus_tag="Cpha266_0002"
/EC_number="2.7.7.7"
/note="KEGG: plt:Plut_0001 DNA-directed DNA polymerase;
TIGRFAM: DNA polymerase III, beta subunit;
PFAM: DNA polymerase III, beta chain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_910503.1"
/db_xref="GI:119355859"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4568533"
/translation="MNMKFTAPIRLLQDAVNRVSQAIPSKAIDPRFENIHLAIEPGKL
TLFASDGEMSITAKSEISSEDTGNISIKARTLQDFLRSMYDTEVTFSIERQEISDHGT
VSISTDKGKYKIPCFFESKMEIYEKNYVINLDLPSVELQYLIQKTIFACSVDGMRPAM
MGVLFELESSSITAVSTDGHRLVRCRKSTVIEVEDKQKIVVSARVLSILQKLPLHETV
IIQIDQDKRFVRFTQNNVVIDASLIVEPYPNYEAVIPVIHDKQVSCDRSNIYDSVKRV
GRFSSVGDIKMVLADSIIKVMAENTNEGESAQEELPCSYTGEDITIGFNAKFIEAALA
HIDEKEIIIELKSPTTAVIFKPVQEKETGSLIILVMPVRINA"
misc_feature 1901..3022
/locus_tag="Cpha266_0002"
/note="DNA polymerase III subunit beta; Provisional;
Region: PRK14941"
/db_xref="CDD:184905"
misc_feature 1901..3013
/locus_tag="Cpha266_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1970..1972,2114..2116,2135..2137,2504..2506)
/locus_tag="Cpha266_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(2117..2119,2126..2128,2219..2221,2225..2227,
2726..2728,2816..2821)
/locus_tag="Cpha266_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2423..2425,2429..2440,2867..2869,3002..3013)
/locus_tag="Cpha266_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2423..2425,2429..2434,2651..2653,2750..2752,
2789..2794,2876..2878,3002..3013)
/locus_tag="Cpha266_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 3303..4400
/locus_tag="Cpha266_0003"
/db_xref="GeneID:4568891"
CDS 3303..4400
/locus_tag="Cpha266_0003"
/note="TIGRFAM: DNA replication and repair protein RecF;
PFAM: SMC domain protein;
KEGG: plt:Plut_0002 RecF protein"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein RecF"
/protein_id="YP_910504.1"
/db_xref="GI:119355860"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:4568891"
/translation="MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIH
YCALTKGFTSIADSDCIFDSSDYYALQSTCLGENGSDIEVRISFSREKGKTLFVNNNE
IKKFSNHVGTIPCITFSPPEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLL
QRNALLAQISEKKSSINMLPYWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSIN
EEPGIVYRSVLGRYDNIRNIDELAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYIN
DKEIKKYASQGQLRTFLIGLKLAVYDYLFDTTHEKPICLLDDIFSELDTQRTENILSI
LQTLGQSIITSTVRRDSDIISSVSVHDLIND"
misc_feature 3303..4340
/locus_tag="Cpha266_0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 3309..>3800
/locus_tag="Cpha266_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3390..3413
/locus_tag="Cpha266_0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(3399..3404,3408..3416,3660..3662)
/locus_tag="Cpha266_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 3651..3662
/locus_tag="Cpha266_0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <4017..4340
/locus_tag="Cpha266_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 4152..4181
/locus_tag="Cpha266_0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 4239..4256
/locus_tag="Cpha266_0003"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 4263..4274
/locus_tag="Cpha266_0003"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 4329..4340
/locus_tag="Cpha266_0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 4411..4704
/locus_tag="Cpha266_0004"
/db_xref="GeneID:4568892"
CDS 4411..4704
/locus_tag="Cpha266_0004"
/note="KEGG: cte:CT2287 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910505.1"
/db_xref="GI:119355861"
/db_xref="GeneID:4568892"
/translation="MSRTKSPRILSSVVQDVCRTLGMNKAIDDFRTVQIWKEVVGTTI
AEITLVERYTDGKLFVRVKSAPWRMELNYRKTEIKNKLNVAIGKEIIEEIIFR"
misc_feature 4438..4698
/locus_tag="Cpha266_0004"
/note="Protein of unknown function (DUF721); Region:
DUF721; pfam05258"
/db_xref="CDD:203224"
gene complement(4906..5004)
/locus_tag="Cpha266_0005"
/pseudo
/db_xref="GeneID:4568893"
gene 5093..6328
/locus_tag="Cpha266_0006"
/db_xref="GeneID:4568894"
CDS 5093..6328
/locus_tag="Cpha266_0006"
/note="PFAM: transposase, IS204/IS1001/IS1096/IS1165
family protein;
KEGG: cte:CT0518 transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS204/IS1001/IS1096/IS1165 family
protein"
/protein_id="YP_910506.1"
/db_xref="GI:119355862"
/db_xref="InterPro:IPR002560"
/db_xref="GeneID:4568894"
/translation="MPPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDK
QAECPECGQLCKIYDHTSEQQWRHLDTMQFETIIVARLPRCKCKEHGVKTVRVPWAAR
HSRFTLMFESFAIELLMHCSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAY
LGIDEKSFKAGQHYVTTLNDLDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSA
DMWKPYANAVEELLPNADLVHDRFHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKY
VWLRNPENMREQQKVELSNLMACEFKTSQAWALKNMFRYFWQLGDTDGASFFFEYWSR
RVDEVGLTPLIDVKELLQRHFDHILTYFKHAITNAVSEGLNSKIQIVKASARGFHRFE
SYRNRILFYCGKLNMAISS"
misc_feature 5114..6298
/locus_tag="Cpha266_0006"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3464"
/db_xref="CDD:33267"
misc_feature 5573..6286
/locus_tag="Cpha266_0006"
/note="Transposase; Region: DDE_Tnp_ISL3; pfam01610"
/db_xref="CDD:201887"
gene complement(6323..6733)
/locus_tag="Cpha266_0007"
/db_xref="GeneID:4568895"
CDS complement(6323..6733)
/locus_tag="Cpha266_0007"
/note="KEGG: spn:SP0811 transposase family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910507.1"
/db_xref="GI:119355863"
/db_xref="GeneID:4568895"
/translation="MFFTLTLGDSYFPKLAYSCFPITISPQDGVIDWMLGGKMDTVSM
GAFLRQVSHKHPEEFVMMVVDGAPSHRAEHLRVPKNMVLVKLPPYSPELNPVEHLWDE
LREKEFANRVFETLGAVIVGSSQNFVESPTAITS"
misc_feature complement(6386..>6664)
/locus_tag="Cpha266_0007"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:205537"
gene 6781..8352
/locus_tag="Cpha266_0008"
/db_xref="GeneID:4568896"
CDS 6781..8352
/locus_tag="Cpha266_0008"
/note="PFAM: Integrase, catalytic region;
KEGG: bfs:BF1534 putative transposase for insertion
sequence element IS21-like"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_910508.1"
/db_xref="GI:119355864"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:4568896"
/translation="MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRM
TDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTR
TIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRG
AILYTEAFRKYLLHRSLKIHLCRKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQ
EALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNT
ISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNN
HRRDTSSKLRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQK
LIDDALAHCVDHHLFSSGEFHDILHHYRKQEEKQSHQAVFNTFRPKTLRSDMDRMLSF
VPDSSGITTYENIFS"
misc_feature 6835..7674
/locus_tag="Cpha266_0008"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature 7249..7557
/locus_tag="Cpha266_0008"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 8358..9194
/locus_tag="Cpha266_0009"
/db_xref="GeneID:4568897"
CDS 8358..9194
/locus_tag="Cpha266_0009"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: bfs:BF1535 insertion sequence IS21-like putative
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="IstB ATP binding domain-containing protein"
/protein_id="YP_910509.1"
/db_xref="GI:119355865"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4568897"
/translation="MERTITTIQEHARELNLTGLAGTVDLLLEEARKSEPSYSDFALT
LLESELSCRRKAHLERRRKIANLPLLHDLDHYDSGVQNGISQVQLQQLRQLLWLDQNF
NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRL
LSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLA
TALLDRLLYKCEVIKLTGKSYRLEHRTTIFEQQQSPEGGGNRRKKQLPLQKGVGNHCK
MT"
misc_feature 8391..9089
/locus_tag="Cpha266_0009"
/note="transposase; Provisional; Region: PRK06526"
/db_xref="CDD:180607"
misc_feature 8664..8972
/locus_tag="Cpha266_0009"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 8679..8702
/locus_tag="Cpha266_0009"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(8682..8705,8862..8864,8961..8963)
/locus_tag="Cpha266_0009"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 8850..8867
/locus_tag="Cpha266_0009"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(9259..9387)
/locus_tag="Cpha266_0010"
/pseudo
/db_xref="GeneID:4568898"
gene complement(9405..9935)
/locus_tag="Cpha266_0011"
/db_xref="GeneID:4568899"
CDS complement(9405..9935)
/locus_tag="Cpha266_0011"
/note="KEGG: pol:Bpro_3862 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910510.1"
/db_xref="GI:119355866"
/db_xref="GeneID:4568899"
/translation="MARPAVITDEMECLAKKIVKEANTARELRAGLSILIPKTCDITY
SETAELLGISVPTVVRIHRDISNQAAGKATPKGSWGGRRRQTLSLDEEARFLAEWVEK
AEQGGVLVVPPIHTALEQRLGKTVAVSTVYRMLARHGWRKVEPDTCHPKQNMEEQEEF
KKNSQRYWYKPPSKMY"
misc_feature complement(9519..9809)
/locus_tag="Cpha266_0011"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:205729"
misc_feature complement(9447..9596)
/locus_tag="Cpha266_0011"
/note="Winged helix-turn helix; Region: HTH_33; pfam13592"
/db_xref="CDD:205770"
gene 10031..10336
/locus_tag="Cpha266_0012"
/pseudo
/db_xref="GeneID:4568900"
gene complement(10369..11061)
/locus_tag="Cpha266_0013"
/db_xref="GeneID:4568901"
CDS complement(10369..11061)
/locus_tag="Cpha266_0013"
/note="PFAM: Rhodopirellula transposase family protein;
KEGG: ana:all8069 transposase unknown protein"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_910511.1"
/db_xref="GI:119355867"
/db_xref="InterPro:IPR011518"
/db_xref="GeneID:4568901"
/translation="MNALADGDPETLRLSIDTKATVHVGQYSRGGKSRGIKAVEAWDH
DMRPKEKLVPGGILEPVSGKSFLFFGSSNKTSDFLVDGLELWWNERKSELYNVKQLVI
NMDNGPECNGRRSQFLYRMTMFADMTGLNIRLIYYPPYHSKYNSIERYWAGLEKSWNG
YLLESVTTVINRAGNFAWRGIAAKARLVDTVYQKGVKLCGKDKKNLEKRLMRSPSLHW
WDISISPKTVFL"
misc_feature complement(10384..>11058)
/locus_tag="Cpha266_0013"
/note="Rhodopirellula transposase DDE domain; Region:
DDE_Tnp_ISAZ013; pfam07592"
/db_xref="CDD:148936"
gene complement(11058..11600)
/locus_tag="Cpha266_0014"
/db_xref="GeneID:4568902"
CDS complement(11058..11600)
/locus_tag="Cpha266_0014"
/note="KEGG: ana:all8069 transposase unknown protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910512.1"
/db_xref="GI:119355868"
/db_xref="GeneID:4568902"
/translation="MKTSVLSRNNISPEVSGLITRLVSLIPWPARRQAMGDVVVTILD
SKPRVAENEFGWNRSAVALGIKEFESGIVCVNDLTERHKPKSEEKHPELLEAIRKIME
PQSQAEPRLRTTLLYTNMTAQSVYNALLAEGWSEESLPAVRTISNILNRQNYRLRTVQ
KTKVEKKQQKPTPSSKTSGK"
misc_feature complement(<11130..11321)
/locus_tag="Cpha266_0014"
/note="Rhodopirellula transposase DDE domain; Region:
DDE_Tnp_ISAZ013; pfam07592"
/db_xref="CDD:148936"
gene 11704..12462
/locus_tag="Cpha266_0015"
/db_xref="GeneID:4568903"
CDS 11704..12462
/locus_tag="Cpha266_0015"
/note="PFAM: transposase, IS4 family protein;
KEGG: pca:Pcar_0986 ISGsu1, transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910513.1"
/db_xref="GI:119355869"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4568903"
/translation="MDATVIDLCLRVFPWAEFRQRKGAIKLHYLYDHRSSLPAFMVMT
DGKKSDIRVARSQEKLDFHLLPDSIVSFDRAYIDFEWLYTLDQRKVWFVTRSKANIQY
RIIGQHQPIKNKQVTRDERIELIIEKSRAKYLKPLRLVCYTDQETGKAYEFITNNIKL
AASTIAAIYKSRWQIETFFRWIKQNLKIKSFQGTSQNAVLSQTWIAMCYYLRLSYIKF
KTKYRHSLQELTRMIAAVLIEHRLLIDISSLRSR"
misc_feature 11704..12336
/locus_tag="Cpha266_0015"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
misc_feature <12106..12387
/locus_tag="Cpha266_0015"
/note="FOG: Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3385"
/db_xref="CDD:33192"
gene complement(12481..12588)
/locus_tag="Cpha266_0016"
/pseudo
/db_xref="GeneID:4568904"
gene 12686..14092
/locus_tag="Cpha266_0017"
/db_xref="GeneID:4568905"
CDS 12686..14092
/locus_tag="Cpha266_0017"
/note="PFAM: transposase, IS4 family protein;
KEGG: mes:Meso_4308 transposase, IS4"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910514.1"
/db_xref="GI:119355870"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4568905"
/translation="MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNA
TSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYEDGN
DSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSY
TEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGR
RPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGG
NDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWKETRRVVAKVEMTEKGLNVRFIS
TDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYV
LVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKC
FAVLEHLRSVPWPSTAIP"
misc_feature 12764..14068
/locus_tag="Cpha266_0017"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:205876"
gene complement(14359..15489)
/locus_tag="Cpha266_0018"
/db_xref="GeneID:4568906"
CDS complement(14359..15489)
/locus_tag="Cpha266_0018"
/note="PFAM: Rhodopirellula transposase family protein;
KEGG: eba:ebA5952 hypothetical protein"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_910515.1"
/db_xref="GI:119355871"
/db_xref="InterPro:IPR011518"
/db_xref="GeneID:4568906"
/translation="MDIHDDDIDLIRIRFEKIEWALDERMRRLFAANEAYALGHGGVT
KVSQATGVSRRAIHVGLDELVAAKPPVPEQEKRIRKVGGGRKSITKTESGVLIALEQL
VEPTTRGDPESPLRWTCKSLRTISEELARQGFKVSYPKVADLLRELGYSLQANRKTLE
GADHPDRNAQFELINTQTKETIAGGNPVISVDTKKKELVGAFKNNGTNWRPQGEPEEV
KVHDFIDKDLGRANPYGVYDIGSNTGWVSVGTDHDTASFAVETIRRWWYTMGKPRYAD
ATKIMITADGGGSNGSKVRLWKLELQKLADELRMSIHVSHLPPGTSKWNKIEHRLFSY
ISMNWRGQPLISHEVIVNLIAGTTTKAGLKVYSELDDTTYPE"
misc_feature complement(14365..15198)
/locus_tag="Cpha266_0018"
/note="Rhodopirellula transposase DDE domain; Region:
DDE_Tnp_ISAZ013; pfam07592"
/db_xref="CDD:148936"
gene 16159..17565
/locus_tag="Cpha266_0019"
/db_xref="GeneID:4568907"
CDS 16159..17565
/locus_tag="Cpha266_0019"
/note="PFAM: transposase, IS4 family protein;
KEGG: mes:Meso_4308 transposase, IS4"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910516.1"
/db_xref="GI:119355872"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4568907"
/translation="MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNA
TSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYEDGN
DSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSY
TEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGR
RPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGG
NDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWKETRRVVAKVEMTEKGLNVRFIS
TDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYV
LVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKC
FAVLEHLRSVPWPSTAIP"
misc_feature 16237..17541
/locus_tag="Cpha266_0019"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:205876"
gene 17769..18017
/locus_tag="Cpha266_0020"
/db_xref="GeneID:4568908"
CDS 17769..18017
/locus_tag="Cpha266_0020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910517.1"
/db_xref="GI:119355873"
/db_xref="GeneID:4568908"
/translation="MASPMAGSFLARDASLLQSHELFRLGREVWIYDKISSDRVYSSG
GLFIATGASSTSQKTLTIVIKFDDNRKVREFAYHTSRF"
gene 18030..18560
/locus_tag="Cpha266_0021"
/db_xref="GeneID:4568909"
CDS 18030..18560
/locus_tag="Cpha266_0021"
/note="KEGG: bur:Bcep18194_B0172 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910518.1"
/db_xref="GI:119355874"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4568909"
/translation="MKKIRTLLVLSMLLATGCQSTIPKDALVLNNESLATRQLQTRKY
QTKDEAKVLSSVAGVLQDLGFNLNESHSALGVISASKTRSAVNAGQQILAVTFALLGG
GVSATDDHQVMTASVVTKPVGEKSDYVAVRVTFQRLVYNTNGQVSKAESLQDSEIYQG
FFEKLSKSIFLEAQEI"
sig_peptide 18030..18092
/locus_tag="Cpha266_0021"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.997) with cleavage site probability 0.870 at
residue 21"
gene complement(19639..19869)
/locus_tag="Cpha266_0022"
/pseudo
/db_xref="GeneID:4568910"
gene complement(19873..20707)
/locus_tag="Cpha266_0023"
/pseudo
/db_xref="GeneID:4568911"
gene complement(20845..22209)
/locus_tag="Cpha266_0024"
/db_xref="GeneID:4568912"
CDS complement(20845..22209)
/locus_tag="Cpha266_0024"
/note="KEGG: eba:ebA562 transposase"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_910519.1"
/db_xref="GI:119355875"
/db_xref="GeneID:4568912"
/translation="MRKSKKAATMSLVHPNAAGIDIGSQFHDVAIPPDRAEETVKSFK
SFTGDLHAMAKWLTACRIDTIAMESTGVYWIPAFEILENYGFKVFLVNAREAKNVPGR
KTDSNDAQWLQKLHQLGLLRASFQPTSVIAELRAYLRQREKLLDYKAAHIQHMQKALM
QMNIQLHHVVSTITGKTGMDIIRAIVAGNRNPQELVKFRDVRCKNSIETMTAALTGNF
KPEHIFALMQSLELYDIYNEKAEACDREIQAVLDRLQQNSIPPDQPLPKAKYRECNKN
APAFDVRQTLFNIIGVDLTQITGLGSYLALKLVSECGADMSKWPTDKHFTSWLCLSPG
NKISGGKILSSRTRPSSSRAAALLRLAATAIGRTETALGAFYRRLATRTGKAKAVTAT
ARKIAVLFYNTLRYGMRYVDPGADYYEEQYKARILGQLRRRADSYGFSLQPMEIPDTA
IGVS"
sig_peptide complement(22153..22209)
/locus_tag="Cpha266_0024"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.721) with cleavage site probability 0.381 at
residue 19"
misc_feature complement(21748..22158)
/locus_tag="Cpha266_0024"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:201852"
misc_feature complement(<21184..21330)
/locus_tag="Cpha266_0024"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene complement(22578..22913)
/locus_tag="Cpha266_0025"
/pseudo
/db_xref="GeneID:4568913"
gene complement(23043..24266)
/locus_tag="Cpha266_0026"
/db_xref="GeneID:4568914"
CDS complement(23043..24266)
/locus_tag="Cpha266_0026"
/note="PFAM: beta-lactamase domain protein;
flavodoxin/nitric oxide synthase;
KEGG: cte:CT2285 rubredoxin:oxygen oxidoreductase,
putative"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_910520.1"
/db_xref="GI:119355876"
/db_xref="InterPro:IPR001279"
/db_xref="InterPro:IPR008254"
/db_xref="GeneID:4568914"
/translation="MIDNKILPVTQDVTWIGVLDPGLITFDIVMETKYGTTYNSYFIN
ADKKTIVETTKEKFWPIYLDKIKQVTNPEEIEYIIVDHTEPDHSGNVRNLLSVAPHAT
VVGSGNALKFLRDQTGHDFKSLVVKTGDTLDLGNKTLHFINAPNLHWPDTIYTWLEED
RVLFTCDSFGSHFCHEGMYDDAVGDFDDAFTYYYDAILRPFSKYMLQAIEKIAPLDIK
IICPGHGPILRSNWKKYVDLSHRLATKAIALPNEKNILIAYVSAYENTAVLAEKIAEG
LRESCDFTIEICDIENIHFSKLEDKLAHCYGLIVGSPTINQNILLQIYNLFAAINPIR
DKGKLAAAFGSYGWSGEGVKMIETNLSMLKLKVFDQNVMVKFKPHEAEFEKCRLFGKS
FADKMIEMFQLSCNL"
misc_feature complement(23082..24254)
/locus_tag="Cpha266_0026"
/note="Uncharacterized flavoproteins [Energy production
and conversion]; Region: FpaA; COG0426"
/db_xref="CDD:30775"
misc_feature complement(23595..24152)
/locus_tag="Cpha266_0026"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
misc_feature complement(23085..23504)
/locus_tag="Cpha266_0026"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:212217"
gene complement(24550..26940)
/locus_tag="Cpha266_0027"
/db_xref="GeneID:4568915"
CDS complement(24550..26940)
/locus_tag="Cpha266_0027"
/note="PFAM: DNA polymerase B, exonuclease; DNA polymerase
B region;
SMART: DNA-directed DNA polymerase B;
KEGG: plt:Plut_0005 DNA-directed DNA polymerase B"
/codon_start=1
/transl_table=11
/product="DNA polymerase B region"
/protein_id="YP_910521.1"
/db_xref="GI:119355877"
/db_xref="InterPro:IPR006133"
/db_xref="InterPro:IPR006134"
/db_xref="InterPro:IPR006172"
/db_xref="GeneID:4568915"
/translation="MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKI
SHRDEPFYPYFFLSESSLLEGFVPEENRKYWIIKLNGNNFYRFLAIFSSWKDFRSGLD
IINGKNRAASPEADTTNPAPSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQL
DIETCYDPDKKRTGSGIGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIAR
DPDVIEGHNIFSFDLPYIQKRCDRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFE
IPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTYVEYKDIISTWENNP
DKLLAYALDDVRETRALASHLSGSNYYLSRMMPYTYAMTSRLGQAAKIEALFIREYLR
QKHSIPKPSSGQQHSGGYTEVFLKGILGPIVYADVESLYPSIMLTCGICPKTDDLRVF
PSVLGNLKDLRFKTKKLSGEEKQKGNLQMADNFDAMQGSFKILINAMYGYLGFNNGIF
NDFDEADKVTTTGQGIAKKMIHEFEARGCKVIEVDTDGILFVPPPGIVTENEERTLVR
EVSSLMPEGINIGYDGRYKKMISYMKKNYALLDDDNVMIVKGSSLTSRSSEKFGRDFV
KRGFEKLLSEDIAGLHDLYTEYKEKILAHALDIGDFSRTETLKSTMEQYLEDVRSGRR
SKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEKGKLASDWKKDNPDDNTVFYL
KRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIKEIIHTDTDTTGSAGLY"
misc_feature complement(25882..26502)
/locus_tag="Cpha266_0027"
/note="Uncharacterized bacterial subgroup of the DEDDy
3'-5' exonuclease domain of family-B DNA polymerases;
Region: DNA_polB_like2_exo; cd05785"
/db_xref="CDD:99828"
misc_feature complement(25300..26478)
/locus_tag="Cpha266_0027"
/note="DNA polymerase type-B family; Region: POLBc;
smart00486"
/db_xref="CDD:197755"
misc_feature complement(order(25909..25911,25921..25923,26029..26034,
26245..26253,26260..26265,26449..26460))
/locus_tag="Cpha266_0027"
/note="active site"
/db_xref="CDD:99828"
misc_feature complement(order(25909..25911,25921..25923,26245..26247,
26452..26454,26458..26460))
/locus_tag="Cpha266_0027"
/note="catalytic site [active]"
/db_xref="CDD:99828"
misc_feature complement(order(25909..25911,25921..25923,26029..26034,
26248..26253,26260..26265,26449..26457))
/locus_tag="Cpha266_0027"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99828"
misc_feature complement(24682..25731)
/locus_tag="Cpha266_0027"
/note="DNA polymerase type-II B subfamily catalytic
domain. Bacteria contain five DNA polymerases (I, II, III,
IV and V). DNA polymerase II (Pol II) is a prototype for
the B-family of polymerases. The role of Pol II in a
variety of cellular activities, such as...; Region:
POLBc_Pol_II_B; cd05538"
/db_xref="CDD:99921"
misc_feature complement(order(25306..25308,25456..25458,25468..25470,
25558..25560,25648..25656,25663..25665))
/locus_tag="Cpha266_0027"
/note="active site"
/db_xref="CDD:99921"
misc_feature complement(order(25306..25308,25312..25314))
/locus_tag="Cpha266_0027"
/note="metal-binding site"
/db_xref="CDD:99921"
gene complement(27338..29203)
/locus_tag="Cpha266_0028"
/gene_synonym="gidA"
/db_xref="GeneID:4568916"
CDS complement(27338..29203)
/locus_tag="Cpha266_0028"
/gene_synonym="gidA"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="YP_910522.1"
/db_xref="GI:119355878"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR004416"
/db_xref="GeneID:4568916"
/translation="MYDIIVAGAGHAGCEAVLAAARTGMSCLLITSDLSAIARMSCNP
AIGGVAKGQITREIDALGGEMAKAIDETGIQFRMLNKSKGAAMHSPRAQADRALYSVY
MRKIIEEQDNIDLVQDTVTGLDVESGAVRGAILPSGRIIKGKSVILCCGTFLNGLIHI
GMNHFPGGRTIAEPPVSGLTENLQSLGFRAGRLKTGTPPRIDSRSVNYSLVEEQSGDP
DPRPFSFHTDSLGHRAQVSCFVTKTKETTHELLRTGFSRSPLFSGKVQGVGPRYCPSV
EDKIFRFPDKNSHHIFLEPEGAETNEMYVNGFSTSLPEDIQLLALRSIPGLEHVKMIR
PGYAIEYDFFFPYQIKNTLETKIIENLYFAGQINGTSGYEEAAAQGLMAGINASLKIQ
NRKPFVLDRSQAYIGVLIDDLVTKDIIEPYRMFTSSAEHRISLRHDNADIRLCRMGHE
AGTVDFSSFTKTEYKISAIRQLRQLCDTMKLHPDQIISAMAGAAQQPPLQPIAISNLL
KRPEIDFENLLVLSEDFRAGVNEITTDPDVFEQVVIDLKYEGYLKRDLLMTEKIARLE
SHSIPGSFSYATVSGLSNEGREKLTLHKPETIGQASRIPGVSPSDISVLLIKIGR"
misc_feature complement(27341..29203)
/locus_tag="Cpha266_0028"
/gene_synonym="gidA"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature complement(27974..>28285)
/locus_tag="Cpha266_0028"
/gene_synonym="gidA"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(27353..27565)
/locus_tag="Cpha266_0028"
/gene_synonym="gidA"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 29664..30065
/locus_tag="Cpha266_0029"
/db_xref="GeneID:4568917"
CDS 29664..30065
/locus_tag="Cpha266_0029"
/note="KEGG: cch:Cag_1923 twin-arginine translocation
pathway signal"
/codon_start=1
/transl_table=11
/product="thiosulfate-binding protein SoxY"
/protein_id="YP_910523.1"
/db_xref="GI:119355879"
/db_xref="GeneID:4568917"
/translation="MAASISMMPSRLFAAWCEKCFSPCPIDNAFINTLGTRDFVQTDK
ITIVAPQVASDSSLVPVEIISSIKAERLYLFVEKNISPLVFQCTLYGSAEPYVSLNVK
LKESSLVYAVLKEGSRYYRASVHINVLAQAC"
misc_feature 29748..30062
/locus_tag="Cpha266_0029"
/note="Sulfur oxidation protein SoxY; Region: SoxY;
pfam13501"
/db_xref="CDD:205679"
gene 30107..30403
/locus_tag="Cpha266_0030"
/db_xref="GeneID:4568918"
CDS 30107..30403
/locus_tag="Cpha266_0030"
/note="KEGG: cte:CT1018 sulfur oxidation protein SoxZ"
/codon_start=1
/transl_table=11
/product="sulfur oxidation protein SoxZ"
/protein_id="YP_910524.1"
/db_xref="GI:119355880"
/db_xref="GeneID:4568918"
/translation="MRVLARELNGIVLLKIIIEHPSESGTRKDEQGNVIPAHFIREGR
IALNGAPLFDLDLGPSVSRDPFFQLKFAGKKGDQIKLEFTDSKFQEFSADCVVT"
misc_feature 30107..30397
/locus_tag="Cpha266_0030"
/note="Sulphur oxidation protein SoxZ; Region: SoxZ;
pfam08770"
/db_xref="CDD:149737"
gene 30479..30859
/locus_tag="Cpha266_0031"
/db_xref="GeneID:4568919"
CDS 30479..30859
/locus_tag="Cpha266_0031"
/EC_number="1.-.-.-"
/note="PFAM: cytochrome c, class I;
KEGG: cch:Cag_2005 sulfide dehydrogenase, cytochrome
subunit"
/codon_start=1
/transl_table=11
/product="sulfide dehydrogenase (flavocytochrome),
cytochrome c subunit"
/protein_id="YP_910525.1"
/db_xref="GI:119355881"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR008169"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4568919"
/translation="MQAKLRLWLTFCVVTPVLLLFGNAGLAEQTPAPKVLKPVTSKAV
GVTPRGQVLSLSCSSCHGTDGKSVGIMPSFYGKTPQYIETALLEFKSGKRYSTVMGRH
AKGYSDDEIHLIAQYCGIKGQKTK"
sig_peptide 30479..30562
/locus_tag="Cpha266_0031"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.995) with cleavage site probability 0.855 at
residue 28"
misc_feature 30485..30829
/locus_tag="Cpha266_0031"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 30581..>30829
/locus_tag="Cpha266_0031"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:212313"
gene 30874..32166
/locus_tag="Cpha266_0032"
/db_xref="GeneID:4568920"
CDS 30874..32166
/locus_tag="Cpha266_0032"
/EC_number="1.-.-.-"
/note="PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase;
KEGG: cch:Cag_2004 sulfide dehydrogenase, flavoprotein
subunit"
/codon_start=1
/transl_table=11
/product="sulfide dehydrogenase (flavocytochrome),
flavoprotein subunit"
/protein_id="YP_910526.1"
/db_xref="GI:119355882"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4568920"
/translation="MSNKLSRRDFNKLLVSGVAGSAFGVFGGASSAFAAKNRVVVIGG
GFGGAAAAKYLKKLDPTLSVTLIEPKETFYTCPFSNWVLGGLKTMEDIGQTYTVLKTR
YGIDVVVDAAAGVDASKNAVTLKSGRVIKYDRLIVSPGIDFKWKAIEGYSQAVSETKM
PHAYQGGAQTILLHKQLLAMPDGGRVIITAPGNPFRCPPGPYERASLIANYLKKNKPK
SKIIILDAKDKFSKQALFRKGWEKLYPGMIEWRGSTTGGKISMVDGAAMTVTTEFGVE
KGDVINVIAPQQAGKIAFDCGLTDASGWCPVNPITFESTMHPGIHVIGDACIAGAMPK
SGFAASSHGKVAAASIIRLFQGKVPAPPSLVNTCYSLLAPGYGISVAGVYKLSAEGIV
EIPGSGGLTPLDADEEKLGEEATFAQGWYNNIAQDIWG"
sig_peptide 30874..30978
/locus_tag="Cpha266_0032"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.991 at
residue 35"
misc_feature 30988..32082
/locus_tag="Cpha266_0032"
/note="Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only]; Region: HcaD; COG0446"
/db_xref="CDD:30795"
misc_feature 31948..32163
/locus_tag="Cpha266_0032"
/note="Flavocytochrome c sulphide dehydrogenase,
flavin-binding; Region: FCSD-flav_bind; pfam09242"
/db_xref="CDD:204176"
gene 32395..34254
/gene="secD"
/locus_tag="Cpha266_0033"
/db_xref="GeneID:4568921"
CDS 32395..34254
/gene="secD"
/locus_tag="Cpha266_0033"
/note="part of the preprotein secretory system; when
complexed with proteins SecF and YajC, SecDFyajC
stimulates the proton motive force-driven protein
translocation, and appears to be required for the release
of mature proteins from the extracytoplasmic side of the
membrane"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecD"
/protein_id="YP_910527.1"
/db_xref="GI:119355883"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR003335"
/db_xref="InterPro:IPR005791"
/db_xref="GeneID:4568921"
/translation="MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDS
LKFSLAHRDEIENARRKSLKLGLDLKGGMHLVMEVDQIDLFMQKAWNKDARFFELMDK
VKQKSVTSDARVIDLIVNEFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKE
IIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDML
LRALDRVNSALVQASVQKPVVPDSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYD
VIGVLPNGTVFTPEQSREFVLTLLQRADVQALLPQDSELLLSAKPEVGEKGEKYYPIY
LVKKTAELTGGVITEAKATFGSEGVQPEVMMSMNSDGTGKWARITGANIGKRIAIVLD
GAVYSAPVVQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIMEERTVGPSLG
ADYIRAGMLSLLWGFCAVSIFMLVYYRKAGIAADIALLLNILIVLSVLAGFNASLSLP
GIAGIVLTMGMAVDANVLIYERIREELDEGKPLKSAITLGYDRAFSSILDSHVTTLSA
AFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVTREIFTILLGRNMMTEKSFG"
sig_peptide 32395..32460
/gene="secD"
/locus_tag="Cpha266_0033"
/product="preprotein translocase subunit SecD"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.987) with cleavage site probability 0.976 at
residue 22"
misc_feature <33286..34224
/gene="secD"
/locus_tag="Cpha266_0033"
/note="preprotein translocase subunit SecD; Reviewed;
Region: secD; PRK05812"
/db_xref="CDD:180271"
misc_feature 33721..34185
/gene="secD"
/locus_tag="Cpha266_0033"
/note="protein-export membrane protein, SecD/SecF family;
Region: 2A0604s01; TIGR00916"
/db_xref="CDD:162105"
gene 34277..35212
/gene="secF"
/locus_tag="Cpha266_0034"
/db_xref="GeneID:4568922"
CDS 34277..35212
/gene="secF"
/locus_tag="Cpha266_0034"
/note="forms a complex with SecD and YajC; SecDFyajC
stimulates the proton motive force-driven protein
translocation; seems to modulate the cycling of SecA by
stabilizing its membrane-inserted state and appears to be
required for the release of mature proteins from the
extracytoplasmic side of the membrane; in some organisms,
such as Bacillus subtilis, SecD is fused to SecF"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_910528.1"
/db_xref="GI:119355884"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR003335"
/db_xref="InterPro:IPR005665"
/db_xref="GeneID:4568922"
/translation="MRIFHKTSFDFIKYRKISYAISVFLLLIGIGSLFVKGLNYGIDF
RGGSEVLIRFEKNIDVAAVRSVLDNTGMSGTLKQYGLDRSFLFSTAFNGQTNELKSLI
SNSLNDRLKGNPHEIVRIDAVGPSIASDLKWSALKALLAALLAILLYVGIRFEIKFAT
AGVVAIFHDIFVVLGLFSLLGGVFDFMPLELDQSIIAAFLTIAGYSITDTVVVYDRIR
ERIRGQKPADYERIFNESMNQTLSRTIITSGTLLISVLVLFVFAGPAIRGFAFAVFMG
VFIGTYSSIFVAAPIVYDWLKLTKSSVKLRGGSAS"
sig_peptide 34277..34384
/gene="secF"
/locus_tag="Cpha266_0034"
/product="preprotein translocase subunit SecF"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.964) with cleavage site probability 0.841 at
residue 36"
misc_feature 34292..35161
/gene="secF"
/locus_tag="Cpha266_0034"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:183847"
misc_feature 34370..34456
/gene="secF"
/locus_tag="Cpha266_0034"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 34622..35167
/gene="secF"
/locus_tag="Cpha266_0034"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:111266"
gene 35469..36785
/locus_tag="Cpha266_0035"
/db_xref="GeneID:4568923"
CDS 35469..36785
/locus_tag="Cpha266_0035"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase;
KEGG: cte:CT2264 peptidyl-prolyl cis-trans isomerase SurA"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_910529.1"
/db_xref="GI:119355885"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:4568923"
/translation="MKKMLTAAVFVMLVAFSFTLGNLHADVADRIVAVVGNEVILKSE
IDDRALMTVMQYPETQKDTRLKEKILAGIIDQKVILVKARIDSTQVDESTLDALTNER
LKMLASRFASKEAMEEKFGKSMGVIRQEIRNELKDQQLIETLRKKQLAGITVTHEETV
DFYRNHKQQLPQVSELVGLSQILKYPDLPQGSKDAALAQMKIVQAELKAGADFAATAR
KYSQDPGSAKLGGDLGYVQKGELVRSFEDAAFLLKDGKISDIVETRYGYHIIQRLEKK
PNAVHLRHILIAYDQSKTDEPGTVQLLSRIKSDVLAGRATFADMAKKYSDDPVSGKLG
GVILSGGSGKTLLPVASLRPQMMQIVGSLRNIGDISDPQKIDFQKGNLFYGIFQLNAK
IPVHQLNLEQDYASLEELALEAKKQERYNEWLSQLKKEVLVRISDI"
sig_peptide 35469..35546
/locus_tag="Cpha266_0035"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.999 at
residue 26"
misc_feature 35553..35873
/locus_tag="Cpha266_0035"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:208773"
misc_feature 36045..36290
/locus_tag="Cpha266_0035"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
misc_feature 36267..>36473
/locus_tag="Cpha266_0035"
/note="PPIC-type PPIASE domain; Region: Rotamase_3;
pfam13616"
/db_xref="CDD:205794"
gene complement(36774..38705)
/locus_tag="Cpha266_0036"
/db_xref="GeneID:4568924"
CDS complement(36774..38705)
/locus_tag="Cpha266_0036"
/EC_number="5.99.1.3"
/note="KEGG: plt:Plut_0010 DNA gyrase, B subunit;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase, subunit B domain protein; ATP-binding
region, ATPase domain protein domain protein; TOPRIM
domain protein; DNA topoisomerase, type IIA, subunit B,
region 2 domain protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_910530.1"
/db_xref="GI:119355886"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:4568924"
/translation="MQETVPQAPSPYIASNIQILDGIEHVRKRPAMYIGDIHTRGLHH
LIYEIVDNSIDETLGGFNEYIFVSLNPDGSVTVIDHGRGIPVDIHPQKQKSALELVMT
VIGAGGKFDKGSYKVSGGLHGVGASVVNALSEWCEVEVYRDGKAYFQRFERGVPQGNV
REIGLSDQKGTKTTFKPDNLIFKTTEFRKDIIIDRMRELAFLNKNLSITVQDADGAQE
IFHYEGGLKEFVRFTDINRLSLIKEPIYFIGERDTTIVEIALQYNDSYQENVFSYVNN
INTHEGGTHVTGFRKALTRTLNLYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVEEP
QFEGQTKTKLGNSETQSIVESIVNELLSEFAESNPNVIKMIIEKVKGAAMSREAARKA
KELTRRKSVLESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPL
KGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSPEKLRYGKIIIMTDADVDGA
HIRTLLLTFFFRYMRSLIEAGKVYIAQPPLYLVKSGKDQQYAWDDEERNSITDTLKKM
QKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSLLQVSVENAREADQIFSTLMGDKV
EPRREFIEKNARYVRRLDV"
misc_feature complement(36777..38687)
/locus_tag="Cpha266_0036"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:180181"
misc_feature complement(38262..38582)
/locus_tag="Cpha266_0036"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(38262..38264,38268..38273,38286..38288,
38292..38294,38328..38339,38454..38459,38463..38465,
38469..38471,38475..38477,38541..38543,38550..38552,
38562..38564))
/locus_tag="Cpha266_0036"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(38550..38552)
/locus_tag="Cpha266_0036"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(38331..38333,38337..38339,38457..38459,
38463..38465))
/locus_tag="Cpha266_0036"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(37521..38036)
/locus_tag="Cpha266_0036"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature complement(37881..37883)
/locus_tag="Cpha266_0036"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature complement(order(37527..37529,37539..37541,37551..37556,
37689..37691,37695..37700,37707..37709))
/locus_tag="Cpha266_0036"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature complement(order(37683..37685,37689..37691))
/locus_tag="Cpha266_0036"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature complement(37098..37442)
/locus_tag="Cpha266_0036"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature complement(order(37188..37190,37194..37196,37200..37202,
37410..37412,37419..37424))
/locus_tag="Cpha266_0036"
/note="active site"
/db_xref="CDD:173786"
misc_feature complement(order(37200..37202,37422..37424))
/locus_tag="Cpha266_0036"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature complement(36810..37004)
/locus_tag="Cpha266_0036"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(38787..39170)
/locus_tag="Cpha266_0037"
/db_xref="GeneID:4568925"
CDS complement(38787..39170)
/locus_tag="Cpha266_0037"
/note="PFAM: protein of unknown function UPF0102;
KEGG: cte:CT2262 predicted endonuclease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910531.1"
/db_xref="GI:119355887"
/db_xref="InterPro:IPR003509"
/db_xref="GeneID:4568925"
/translation="MSSDPHMLGIQGEQIAAAYLSRHGYRIIQRNYRYRRNEIDIIAK
KHATICFIEVKTRASLEKGHPSEAVTPKKQKEIIKAAKSYLFSLGTDRCECRFDVIAI
LVRSMKQEEIGLYDLDHFTDAFQAE"
misc_feature complement(38793..39170)
/locus_tag="Cpha266_0037"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:183560"
gene complement(39180..39797)
/gene="rnhB"
/locus_tag="Cpha266_0038"
/db_xref="GeneID:4568926"
CDS complement(39180..39797)
/gene="rnhB"
/locus_tag="Cpha266_0038"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_910532.1"
/db_xref="GI:119355888"
/db_xref="InterPro:IPR001352"
/db_xref="GeneID:4568926"
/translation="MTTDYEYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRP
RHAGLDKLDDSKKLSPNLREQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNN
AVASLHQPPELILVDGNRFMPNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAY
GKEYPEYGFERHFGYPTASHIKAIETFGRTPVHRKSFRLKQLGEK"
misc_feature complement(39195..39746)
/gene="rnhB"
/locus_tag="Cpha266_0038"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature complement(order(39348..39350,39405..39407,39447..39449,
39507..39509,39516..39524,39729..39740))
/gene="rnhB"
/locus_tag="Cpha266_0038"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature complement(order(39390..39392,39447..39449,39735..39740))
/gene="rnhB"
/locus_tag="Cpha266_0038"
/note="active site"
/db_xref="CDD:187695"
gene complement(39830..40219)
/locus_tag="Cpha266_0039"
/db_xref="GeneID:4568927"
CDS complement(39830..40219)
/locus_tag="Cpha266_0039"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910533.1"
/db_xref="GI:119355889"
/db_xref="GeneID:4568927"
/translation="MKDSRDFREFLSGGHAAGKRTFIVVLSLTTHHPLFSERSTRMPS
NVSFVVTALSFTAQMSINGRQRSLWPLKRDQRDRQGAEAEKLRMNRKVKQAARGMKRI
NGPISGKSFDPACRRNHCNEYLQLSEQ"
gene 40727..42424
/locus_tag="Cpha266_0040"
/db_xref="GeneID:4568928"
CDS 40727..42424
/locus_tag="Cpha266_0040"
/note="TIGRFAM: ribonuclease, Rne/Rng family;
PFAM: RNA binding S1 domain protein;
KEGG: plt:Plut_0012 ribonuclease E and G"
/codon_start=1
/transl_table=11
/product="ribonuclease"
/protein_id="YP_910534.1"
/db_xref="GI:119355890"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004659"
/db_xref="GeneID:4568928"
/translation="MKKSLNKQLLMNKTGDEIQVALVEEGRLAELIIERPESRRSIGD
IYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTTTEDYRALIEDDDDDDTTGTDES
DGDEIAAVLSQPAVLPEQNGKSSARSGAKRLTAPAQDGEDGGRRQSYTQMIAGKLKPN
DSILVQVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVIARKERSRLKKL
VRSMLPDGFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLQDAVPPQLIFKEDTI
ISSVLRDSLNADVTEIVANSPVIYKETLNYIQWAAPEMEKNVTLYQGKLPLFEGYSIA
KDVESIFSRKVWLKSGGYIIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAREI
VRQLRLRDIGGIIVVDFIDMLDQKNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQIT
RERIRPSLMQRMGDQCPACGGTGVVQARFTTINQIERWLRKYALQNTMKLQQLDLYVS
PTVAEPLQQSEMNTELKWFLQHLLFVRVKPDESLRSDDFRFYSRKNNKEITAEYGDL"
misc_feature 40778..42187
/locus_tag="Cpha266_0040"
/note="ribonuclease, Rne/Rng family; Region: RNaseEG;
TIGR00757"
/db_xref="CDD:200047"
misc_feature 40832..>40990
/locus_tag="Cpha266_0040"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:88419"
misc_feature <41171..41290
/locus_tag="Cpha266_0040"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
gene 42441..43304
/gene="dapD"
/locus_tag="Cpha266_0041"
/db_xref="GeneID:4568929"
CDS 42441..43304
/gene="dapD"
/locus_tag="Cpha266_0041"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_910535.1"
/db_xref="GI:119355891"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:4568929"
/translation="MTSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTV
RAAEKKEGEWQVNLWVKEGILLGMRLGRLVESHLVFPETGGGFDFFDKDTYPLRRMTL
EDRVRIVPGGSAVRDGSYLAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKN
VHLSAGVQVGGVLEPVGAVPVIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTP
VYDLALETVYRKTSGHPLVIPAGAVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKT
DSATALEQALR"
misc_feature 42516..43301
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature 42756..43187
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(42762..42767,42774..42779,42828..42830,42834..42836,
42882..42890,42936..42938,43014..43016,43020..43022,
43074..43076,43173..43184)
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(42762..42764,42786..42788,42822..42824,42840..42842,
42876..42878,42897..42899,42924..42926,42930..42932,
42951..42953,42957..42962,42969..42971,43008..43016,
43029..43031,43062..43067)
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(42762..42764,42786..42788,42822..42824,42840..42842,
42876..42878,42897..42899,42957..42959)
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(42930..42935,42951..42953,42969..42971,43008..43016,
43029..43031,43062..43067)
/gene="dapD"
/locus_tag="Cpha266_0041"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 43349..45067
/locus_tag="Cpha266_0042"
/db_xref="GeneID:4571233"
CDS 43349..45067
/locus_tag="Cpha266_0042"
/EC_number="3.4.21.102"
/note="KEGG: cte:CT2258 carboxyl-terminal protease;
TIGRFAM: carboxyl-terminal protease;
PFAM: PDZ/DHR/GLGF domain protein; peptidase S41"
/codon_start=1
/transl_table=11
/product="C-terminal processing peptidase-3"
/protein_id="YP_910536.1"
/db_xref="GI:119355892"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR004447"
/db_xref="InterPro:IPR005151"
/db_xref="GeneID:4571233"
/translation="MTCGKHMRQCLCRALISAGAASLLFVIVPVLGIHAAEHDKEYAE
TGKSIELFGHVVRELSEKYVDTVDVGKLIYIGIDGVLESLDPYTVFLDAGQSEELGEI
TSGQYAGIGLGLSKFGGAAYVTSVVEGYPAWKAGIRTGDRIMAINGVSLSKSNIDNLR
EMIKGPAGGSLTVKIEREKSGRPPAPETVTLVRQAVHLNTVSFAGIVDGVAYIVMDSF
SAKSAEELSAALQKLMKESEPEGRSLKGVVLDLRGNPGGLLTSAIDVAGLFVEKGSEV
LSIRGRHPEDRQAYTTQQSPFSSTIPLVVLIDGQSASASEIVSGAIQDLDRGIIIGER
SFGKGLVQSIVELPFNYSIKLTTAKYYTPSGRLIQKDLHSETELIKEGDVPPAGKEKR
AKVYYTAKKRSVYGGGGILPDISVSAVMLSEYEKALVKDGLIFRFAISYHSEHAEQPT
LPLDHPSLLLAFDKFLEDQKFSYTSQPEQEFEKLRTLLIKETPSDGNSEASALLGMKE
EIVRRKRLELSRNREHIARLLELEILRHYSETGAKRAGLHDDPVVRTALELLSDKKRY
SGILSR"
sig_peptide 43349..43456
/locus_tag="Cpha266_0042"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.888) with cleavage site probability 0.825 at
residue 36"
misc_feature 43487..>43627
/locus_tag="Cpha266_0042"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 43526..44524
/locus_tag="Cpha266_0042"
/note="C-terminal peptidase (prc); Region: prc; TIGR00225"
/db_xref="CDD:161775"
misc_feature 43667..43930
/locus_tag="Cpha266_0042"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(43673..43684,43688..43690,43823..43828,43835..43840)
/locus_tag="Cpha266_0042"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <44078..44458
/locus_tag="Cpha266_0042"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(44285..44287,44360..44362)
/locus_tag="Cpha266_0042"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene complement(45059..45778)
/locus_tag="Cpha266_0043"
/db_xref="GeneID:4571234"
CDS complement(45059..45778)
/locus_tag="Cpha266_0043"
/note="KEGG: cch:Cag_0034 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910537.1"
/db_xref="GI:119355893"
/db_xref="GeneID:4571234"
/translation="MTESPTFIGSIGLLSLPNWIIHLSSTLEWGIAALMMFRYGMITG
RKDIRMFGISMLPHWVGSFFIIAYHLTGDSIPLLLDLSETVNLFGSAALLYAVLTLLK
KTSNPTPTGYATCLATIMIAGKPQSYLGEDIFDAILQVSSIVYITFLVLLIVVRKRDP
EVFSPLTVAGFWFVLVFISFTVFSIYLATEVRGNLSLSHDDLLHGLAESLLTLSNLMI
VIGIHRQTVWYEKLAKKAESA"
misc_feature complement(45479..45742)
/locus_tag="Cpha266_0043"
/note="Protein of unknown function (DUF2499); Region:
DUF2499; pfam10693"
/db_xref="CDD:151189"
misc_feature complement(45089..45385)
/locus_tag="Cpha266_0043"
/note="Protein of unknown function (DUF3593); Region:
DUF3593; pfam12159"
/db_xref="CDD:192948"
gene complement(45810..46952)
/locus_tag="Cpha266_0044"
/db_xref="GeneID:4571235"
CDS complement(45810..46952)
/locus_tag="Cpha266_0044"
/note="TIGRFAM: geranylgeranyl reductase;
PFAM: monooxygenase, FAD-binding; FAD dependent
oxidoreductase;
KEGG: cch:Cag_0035 geranylgeranyl reductase"
/codon_start=1
/transl_table=11
/product="geranylgeranyl reductase"
/protein_id="YP_910538.1"
/db_xref="GI:119355894"
/db_xref="InterPro:IPR002938"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR010253"
/db_xref="InterPro:IPR011777"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4571235"
/translation="MRFDVAVIGGGPSGAVAAAELARAGIPTVLIERNLDHVKPCGGA
IPLGLIEEFGIPGELVEKKLSHMRARSPKGRIIEMNMPNGYVGMVRREKFDRYLRSEA
ERAGAVIVEGLVNTIRRSSFGFTISTLNDKVPPIEAHYIIGADGANSKTADELRFPPN
ELKVIAMQQRFKYTPELEQFRDIVEIWFDGEVSPDFYGWIFPKADHLAIGTGTEDRRH
SIKELQKRFIEKIGITEAPYLDEAAKIPMKPRKSFTAEGAILVGDAAGLVTPANGEGI
FFAMRSGKLAAQAMIGHLKHAEPLENYETGFRKLYAPIFFGLEVLQYVYYRNDRLRES
FVAICADDDVQQITFDSYLYKKMVPAPWSTQMKIFSKNIYHLVKGS"
misc_feature complement(<46761..46952)
/locus_tag="Cpha266_0044"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
sig_peptide complement(46896..46952)
/locus_tag="Cpha266_0044"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.935) with cleavage site probability 0.741 at
residue 19"
misc_feature complement(45819..46946)
/locus_tag="Cpha266_0044"
/note="geranylgeranyl reductase; Region: BchP-ChlP;
TIGR02023"
/db_xref="CDD:162664"
gene complement(46993..48462)
/locus_tag="Cpha266_0045"
/db_xref="GeneID:4571236"
CDS complement(46993..48462)
/locus_tag="Cpha266_0045"
/EC_number="6.1.1.14"
/note="Catalyzes a two-step reaction, first charging a
glycine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase"
/protein_id="YP_910539.1"
/db_xref="GI:119355895"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR002315"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4571236"
/translation="MSNTDSKRVQNVNLPPEKVMHKLVSLAKRRGFIFPSSEIYEGLS
SCFDYGPLGSEMKKNIKDLWWNAMTRRHQNIVGIDASIMMNPRVWEASGHVASFNDPM
IDDKATKRRYRADHLIENHIEKLRRDGKDDTALKVQTAYEQASTAADLNRALYDIIIA
EGIKAQDTGSGEWTEVRQFNLMFQCGMGALADKASIVYLRPETAQGIFVNFHNVRESS
RMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQAEAFEAWREERFN
WYTSALGINRDKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIHSRTDFDLKQHQE
YSGKNMEYIDQLTNERYIPYVVETSAGCDRLFLALLSDAYSEDVVDGEPRISLRFSPK
VAPVKAAVLPLLKKGEMAEKAARIADDLRQLYMIQQDDAGSIGKRYRRQDEIGTPFCL
TIDHETLENDTLTIRHRDTASQERISASSIREFLAAGMV"
misc_feature complement(47005..48414)
/locus_tag="Cpha266_0045"
/note="glycyl-tRNA synthetase; Provisional; Region:
PRK04173"
/db_xref="CDD:179765"
misc_feature complement(<48205..48396)
/locus_tag="Cpha266_0045"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(48226..48240)
/locus_tag="Cpha266_0045"
/note="motif 1; other site"
/db_xref="CDD:29813"
misc_feature complement(47353..>47922)
/locus_tag="Cpha266_0045"
/note="Glycyl-tRNA synthetase (GlyRS)-like class II core
catalytic domain. GlyRS functions as a homodimer in
eukaryotes, archaea and some bacteria and as a
heterotetramer in the remainder of prokaryotes. It is
responsible for the attachment of glycine to the 3'...;
Region: GlyRS-like_core; cd00774"
/db_xref="CDD:73227"
misc_feature complement(order(47371..47373,47380..47382,47386..47388,
47392..47394,47491..47493,47509..47514,47704..47706,
47710..47712,47716..47718,47725..47733,47755..47757,
47761..47763,47851..47853,47857..47859))
/locus_tag="Cpha266_0045"
/note="active site"
/db_xref="CDD:73227"
misc_feature complement(47755..47766)
/locus_tag="Cpha266_0045"
/note="motif 2; other site"
/db_xref="CDD:73227"
misc_feature complement(47371..47382)
/locus_tag="Cpha266_0045"
/note="motif 3; other site"
/db_xref="CDD:73227"
misc_feature complement(47008..47358)
/locus_tag="Cpha266_0045"
/note="GlyRS Glycyl-anticodon binding domain. GlyRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
GlyRS_anticodon; cd00858"
/db_xref="CDD:29798"
misc_feature complement(order(47068..47070,47074..47076,47104..47106,
47128..47130,47146..47148,47251..47256))
/locus_tag="Cpha266_0045"
/note="anticodon binding site; other site"
/db_xref="CDD:29798"
gene complement(48703..49020)
/locus_tag="Cpha266_0046"
/db_xref="GeneID:4571237"
CDS complement(48703..49020)
/locus_tag="Cpha266_0046"
/note="PFAM: ATP-dependent Clp protease adaptor protein
ClpS;
KEGG: cte:CT2237 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease adaptor protein ClpS"
/protein_id="YP_910540.1"
/db_xref="GI:119355896"
/db_xref="InterPro:IPR002114"
/db_xref="InterPro:IPR003769"
/db_xref="GeneID:4571237"
/translation="MIFSVSTSLSATRPTPETRQTEQSSGPDLLDAYRVVLYNDEEHT
FDEVISQIIKAVQCNRQKAERCTWEVHTKGRSVVFVGMIDRCIKVSAVLEEIALKTEI
QTD"
misc_feature complement(48715..48930)
/locus_tag="Cpha266_0046"
/note="ATP-dependent Clp protease adaptor protein ClpS;
Region: ClpS; pfam02617"
/db_xref="CDD:145654"
gene complement(49083..50054)
/locus_tag="Cpha266_0047"
/db_xref="GeneID:4571238"
CDS complement(49083..50054)
/locus_tag="Cpha266_0047"
/EC_number="3.4.17.13"
/note="PFAM: peptidase U61, LD-carboxypeptidase A;
KEGG: plt:Plut_0019 muramoyltetrapeptide carboxypeptidase"
/codon_start=1
/transl_table=11
/product="muramoyltetrapeptide carboxypeptidase"
/protein_id="YP_910541.1"
/db_xref="GI:119355897"
/db_xref="InterPro:IPR003507"
/db_xref="InterPro:IPR005479"
/db_xref="GeneID:4571238"
/translation="MPRHFFACMKTLLPKALRKGDTIGLISPSSHSAFPERIARAILY
LEERSFKVKPSTYLNCIDVNPAIADQQKLSDLHAMFEDTEVDAVICLRGGAGATRLLK
NIDYALIEANPKILIGYSDITALSLAILAYTGLVSFSGPMIATELYEPTPYTEEHFWG
MLTDPRYALSLKNHSQHRVTCLKPGDASGNLIGGNLSVLCSLIGTPYLPILDDAILFL
EDVNEPAYRIDRMLSHLLNAGLLSRCRAILFGQFTGTPEKAGEDTRLEHIFDYYATQA
HIEGPVMTGLSYGHIADLMTLPLGAPFQVTVRPRYFSLEARYPVIHA"
misc_feature complement(49152..49988)
/locus_tag="Cpha266_0047"
/note="LD-Carboxypeptidase, a serine protease, includes
microcin C7 self immunity protein; Region: Peptidase_S66;
cd07025"
/db_xref="CDD:132882"
misc_feature complement(order(49239..49244,49353..49358,49365..49370,
49374..49379,49443..49448,49452..49457,49758..49763))
/locus_tag="Cpha266_0047"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132882"
misc_feature complement(order(49185..49187,49398..49400,49695..49697))
/locus_tag="Cpha266_0047"
/note="catalytic triad [active]"
/db_xref="CDD:132882"
gene complement(50094..50360)
/locus_tag="Cpha266_0048"
/db_xref="GeneID:4571239"
CDS complement(50094..50360)
/locus_tag="Cpha266_0048"
/note="PFAM: H+-transporting two-sector ATPase,
delta/epsilon subunit;
KEGG: plt:Plut_0020 ATP synthase F1, epsilon subunit"
/codon_start=1
/transl_table=11
/product="H+-transporting two-sector ATPase subunit
delta/epsilon"
/protein_id="YP_910542.1"
/db_xref="GI:119355898"
/db_xref="InterPro:IPR001469"
/db_xref="GeneID:4571239"
/translation="MASSEKGFDIEIVTPQQQYFSGEIQSIIAPGRDGLFQVLKSHAP
LLSALKNGTVRLTLANKSEKTFTISDGFFEVSNNKAILLTEEIS"
misc_feature complement(50100..50339)
/locus_tag="Cpha266_0048"
/note="ATP synthase, Delta/Epsilon chain, beta-sandwich
domain; Region: ATP-synt_DE_N; pfam02823"
/db_xref="CDD:202416"
gene complement(50376..51764)
/locus_tag="Cpha266_0049"
/db_xref="GeneID:4571240"
CDS complement(50376..51764)
/locus_tag="Cpha266_0049"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. The beta chain is a
regulatory subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit beta"
/protein_id="YP_910543.1"
/db_xref="GI:119355899"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR000793"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005722"
/db_xref="GeneID:4571240"
/translation="MQEGKISQIIGPVVDVDFPEGQLPSILDALTITRPDGTKLVLET
QQHLGEERVRTVAMESTDGLIRGLSVTNTERPIQVPVGPEVLGRMLNVVGDPIDGRGS
VHTSKTYSIHRSAPKFDELSTKTEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGYSVFAGVGERTREGNDLWHEMMESGVIDKTALVFGQMNEPPGAR
ARVALTGLSIAEYFRDEENRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT
EMGELQDRIVSTKKGSVTSVQAIYVPADDLTDPAPATAFAHLDATTVLSRSIAELGIY
PAVDPLDSTSRILDPNIVGDDHYDTAQAVKQILQRYKDLQDIIAILGMDELSDEDKLV
VSRARKVQRFLSQPFFVAEAFTGLAGKYVKLDETIKGFKEIIAGKHDNLPESAFYLVG
TIEEAVQKAKTL"
misc_feature complement(50379..51764)
/locus_tag="Cpha266_0049"
/note="F0F1 ATP synthase subunit beta; Validated; Region:
PRK09280"
/db_xref="CDD:181752"
misc_feature complement(51546..51749)
/locus_tag="Cpha266_0049"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature complement(50718..51539)
/locus_tag="Cpha266_0049"
/note="F1 ATP synthase beta subunit, nucleotide-binding
domain. The F-ATPase is found in bacterial plasma
membranes, mitochondrial inner membranes and in
chloroplast thylakoid membranes. It has also been found in
the archaea Methanosarcina barkeri. It uses a...; Region:
F1-ATPase_beta; cd01133"
/db_xref="CDD:29999"
misc_feature complement(order(50730..50732,50736..50738,50742..50747,
50772..50777,50808..50816,50820..50822,50841..50843,
50853..50858,50865..50867,50916..50918,50937..50939,
50949..50951,50964..50969,50973..50981,50997..50999,
51009..51011,51018..51020,51111..51113,51126..51134,
51198..51200,51207..51215,51396..51398,51402..51404,
51408..51413,51417..51419,51468..51470))
/locus_tag="Cpha266_0049"
/note="alpha subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:29999"
misc_feature complement(51291..51311)
/locus_tag="Cpha266_0049"
/note="Walker A motif; other site"
/db_xref="CDD:29999"
misc_feature complement(order(50763..50768,51018..51020,51030..51032,
51204..51206,51213..51218,51288..51296,51303..51305))
/locus_tag="Cpha266_0049"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29999"
misc_feature complement(51030..51044)
/locus_tag="Cpha266_0049"
/note="Walker B motif; other site"
/db_xref="CDD:29999"
misc_feature complement(order(50745..50750,50766..50768,50772..50774))
/locus_tag="Cpha266_0049"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29999"
misc_feature complement(50379..50696)
/locus_tag="Cpha266_0049"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:144044"
gene complement(51893..51965)
/locus_tag="Cpha266_R0001"
/note="tRNA-Thr3"
/db_xref="GeneID:4571241"
tRNA complement(51893..51965)
/locus_tag="Cpha266_R0001"
/product="tRNA-Thr"
/db_xref="GeneID:4571241"
gene 52157..52699
/locus_tag="Cpha266_0050"
/db_xref="GeneID:4571242"
CDS 52157..52699
/locus_tag="Cpha266_0050"
/note="PFAM: Redoxin domain protein;
KEGG: cch:Cag_2013 thiol:disulfide interchange protein,
thioredoxin family protein"
/codon_start=1
/transl_table=11
/product="redoxin domain-containing protein"
/protein_id="YP_910544.1"
/db_xref="GI:119355900"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR011594"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:4571242"
/translation="MNNMNRIITIVAAGFMLLLATVSTAGAAQPGTQYPVAPSFSVTG
IDNRTITSQSLAGKVYIVNFFASWCPPCRAEIPAMIALQKAYKAKGFTFVGLAVNESG
STIRKFSLANGINYPVALADSKIIADYGRFIDGGIRAIPTSFIVDKSGRVVGIISGAR
DKAYFEAVILDLLKGTKPTK"
sig_peptide 52157..52240
/locus_tag="Cpha266_0050"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.750 at
residue 28"
misc_feature 52184..52681
/locus_tag="Cpha266_0050"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature 52274..52630
/locus_tag="Cpha266_0050"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:48515"
misc_feature order(52361..52363,52370..52372)
/locus_tag="Cpha266_0050"
/note="catalytic residues [active]"
/db_xref="CDD:48515"
gene 52835..54700
/locus_tag="Cpha266_0051"
/db_xref="GeneID:4571243"
CDS 52835..54700
/locus_tag="Cpha266_0051"
/EC_number="4.1.1.32"
/note="catalyzes the phosphorylation and decarboxylation
of oxaloacetate to form phosphoenolpyruvate using GTP"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxykinase"
/protein_id="YP_910545.1"
/db_xref="GI:119355901"
/db_xref="InterPro:IPR008209"
/db_xref="InterPro:IPR008210"
/db_xref="GeneID:4571243"
/translation="MTLVDINAPDFVVNKKLLQWVQETADLCRPDLVHWCDGSQEEYD
LLCEQMVESGTFIRLSAEKRPNSFLCRSDPSDVARVEDRTYICSIRKQDAGPTNNWVA
PKEMKKILAGLYDGCMQGRTMYIIPFSMGPLGSHIAHIGVEITDSPYVVTNMRIMTRM
GRKVLDVLGANGDFVHCLHSVGAPLKAGDQDVSWPCSETKYIVHFPEERSIMSFGSGY
GGNALLGKKCFALRIASAMARDEGWLAEHMLILGVESPDGEKTYVSAAFPSACGKTNF
AMLIPPESFAGWKVTTIGDDIAWIKPGEDGRLHAINPEYGFFGVAPGTSDKSNPNAME
TLKKNCIFTNVALTPDGDVWWEGMTDDIPEELTDWRGNPWTPGCGRPSSHPNARFTAP
ASQCPSIDPDWENPHGVPISAFIFGGRRRDTIPLVYQSANWYFGVYMAATMGSEMTAA
AAGLIGDVRRDPYAMLPFCGYHMGDYFNHWLHIGRTVVDPPRIFGVNWFRKDDDGKFL
WPGFGENMRVLKWIVDRVRGRAGAVESPLGWMPRYEMLGFEGDDGLTQDQFTKLMSID
REAWKKELFSHEELLEKLYDRLPKEFSHIRELMLSTLWMSPEHWELAAERYSEDQ"
misc_feature 52883..54631
/locus_tag="Cpha266_0051"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_GTP;
cd00819"
/db_xref="CDD:29831"
misc_feature 52889..54646
/locus_tag="Cpha266_0051"
/note="Phosphoenolpyruvate carboxykinase; Region: PEPCK;
pfam00821"
/db_xref="CDD:144423"
misc_feature order(53069..53071,53486..53488,53492..53494,53510..53515,
53573..53575,53639..53659,53717..53722,53786..53788,
53792..53794,53819..53821,53996..53998,54359..54361,
54368..54370,54377..54379)
/locus_tag="Cpha266_0051"
/note="active site"
/db_xref="CDD:29831"
misc_feature order(53069..53071,53486..53488,53492..53494,53510..53515,
53786..53788,53996..53998)
/locus_tag="Cpha266_0051"
/note="substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:29831"
misc_feature order(53513..53515,53573..53575,53654..53656,53717..53722,
53786..53788)
/locus_tag="Cpha266_0051"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29831"
misc_feature order(53642..53644,53648..53650,54089..54091,54326..54331,
54359..54361,54368..54370,54377..54379)
/locus_tag="Cpha266_0051"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:29831"
gene 54772..55500
/locus_tag="Cpha266_0052"
/db_xref="GeneID:4571244"
CDS 54772..55500
/locus_tag="Cpha266_0052"
/note="KEGG: cte:CT1620 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910546.1"
/db_xref="GI:119355902"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4571244"
/translation="MKINAGLLLLFSVLVISGCSGKTDSAQTGSVLEASSSSVPKRYE
LKSGIVYYEPTELMGSKSVETLYFDDYGRREARETISDANVMGMKMHSHKMQITDGDY
VISYEIENSVNGKDEASKEATRTDMKEFREMAIMMGQTFDPEEMKRNFDYREEGVEEV
AGVNGTKYSISLNKEKPGERVYGVLYKKISVKSTFGTIVIKAKKIEENVAVPASKFEV
PAGYTIKDVNLEEEMRKASQSGEE"
sig_peptide 54772..54849
/locus_tag="Cpha266_0052"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.996) with cleavage site probability 0.390 at
residue 26"
misc_feature <55333..55440
/locus_tag="Cpha266_0052"
/note="Outer membrane lipoprotein carrier protein LolA;
Region: LolA; cl01065"
/db_xref="CDD:207301"
gene complement(55586..57445)
/locus_tag="Cpha266_0053"
/db_xref="GeneID:4571245"
CDS complement(55586..57445)
/locus_tag="Cpha266_0053"
/note="KEGG: plt:Plut_1667 ATP-requiring DNA helicase
RecQ;
TIGRFAM: ATP-dependent DNA helicase, RecQ family;
ATP-dependent DNA helicase RecQ;
PFAM: helicase domain protein; HRDC domain protein;
DEAD/DEAH box helicase domain protein;
SMART: DEAD-like helicases-like"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_910547.1"
/db_xref="GI:119355903"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002121"
/db_xref="InterPro:IPR004589"
/db_xref="InterPro:IPR006293"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:4571245"
/translation="MTTDSLNPEKKRGCSDAALYETLRKVFGFRDFRPNQEMIVRTII
EKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVISPLIALMKDQVDGARANGIRAAFLN
SSLAPEERTLVLRDLLSNSLDLLYVAPERFTLDQFQEMLKRVNISMAVIDEAHCISEW
GHDFRPDYLSLSQLVTLFPDLPVAAFTATATHQVQRDILDKLALRNPFVVRASFDRAN
LYYDIRFKENASDQLVALLKQNSGKAGIIYRTSRKSVNETAALLKAKGFRVLPYHAGL
GDDERKQNQEAFIRDEVDVIVATVAFGMGIDKSNIRFVIHADLPKSIENYYQETGRAG
RDGEAARCTLLFSQSDIPKVRFFIDAMQDETERARALGAFSKVISFASTSVCRRKTLL
DYFGETYPHDNCNSCDICLGTREVVDCSLEAQMLLSAIARTEERFGATHIVDIVTGSA
NKKIRDFGHDRLKTYGVGKGRDKKFWRQLIDELLAQKVIAKSEGLYPTIVLLPKAVQI
LKNEARVEIVRVLEKKSAKAGKQELSGSYDHELFDQLRELRKQIADEQGIPPYVVFSD
RTLRDMASIFPENNEAMLSVSGVGEVKLDRYGRQFLNLINRYRSDHPERNALS"
misc_feature complement(55622..57385)
/locus_tag="Cpha266_0053"
/note="ATP-dependent DNA helicase RecQ; Region: recQ;
TIGR01389"
/db_xref="CDD:130456"
misc_feature complement(56879..57307)
/locus_tag="Cpha266_0053"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(57266..57280)
/locus_tag="Cpha266_0053"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(56981..56992)
/locus_tag="Cpha266_0053"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(56411..56788)
/locus_tag="Cpha266_0053"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(56543..56551,56624..56629,56687..56698))
/locus_tag="Cpha266_0053"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(56441..56443,56450..56452,56462..56464,
56525..56527))
/locus_tag="Cpha266_0053"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(55919..56194)
/locus_tag="Cpha266_0053"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:198024"
misc_feature complement(55631..55834)
/locus_tag="Cpha266_0053"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene complement(59048..59395)
/locus_tag="Cpha266_0054"
/db_xref="GeneID:4571246"
CDS complement(59048..59395)
/locus_tag="Cpha266_0054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910548.1"
/db_xref="GI:119355904"
/db_xref="GeneID:4571246"
/translation="MIVSYILSLSEPLSLPSTALLRIEIRDTSLADAPSVTLAETQQT
AEQVSGKTVVDGAIDLQKSFSPKATITLWAHLSLSGEKRIKKEDFITTRSYPITTIDE
NGQVLAELHPVSR"
misc_feature complement(<59075..>59155)
/locus_tag="Cpha266_0054"
/note="hybrid sensory kinase in two-component regulatory
system with RcsB and YojN; Provisional; Region: PRK10841"
/db_xref="CDD:182772"
gene complement(59403..60692)
/locus_tag="Cpha266_0055"
/db_xref="GeneID:4571247"
CDS complement(59403..60692)
/locus_tag="Cpha266_0055"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: mbu:Mbur_1233 Fe-S protein, radical SAM family"
/codon_start=1
/transl_table=11
/product="radical SAM domain-containing protein"
/protein_id="YP_910549.1"
/db_xref="GI:119355905"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4571247"
/translation="MHYPYFPFFLSKQDRDTFMASSPYGGFTVNKAGAAILEWSNGSR
SMGEIVKKLQSRYVAESASIAAKTEQFIHDLAKKGYVLIKEKPMRWFDAPPPQTIFWE
ITSQCNLQCLHCVVSAGQSTEPDLSTARCFELLDEWAALGVEEITFSGGEPLLREDFF
DLAAAAAKNNLSISLATNGTLVTREVAKKLKALNVDVQISLDGSTAEIYGRVRGRKEA
FNDVVQGIRNTLAAGVNLTIGTVVTKNNIDDIPEILKFTERSGVPYFRLIPFVPSGRG
KHNRDLELDPLQIQTVSRELVEQRDRWSFTILPLEFELTFSPPSGEQADLSRPSECGG
ATNYCTVTPSGEVLPCHYFEGVVADSLRNRSFRDIWRNSRFLNYFRSIEIGDIQGYCH
GCDWLSECRGGCKAANFSRGDLFQSNCHCWVVKENHQ"
misc_feature complement(60450..60650)
/locus_tag="Cpha266_0055"
/note="Coenzyme PQQ synthesis protein D (PqqD); Region:
PqqD; cl05126"
/db_xref="CDD:212276"
misc_feature complement(59454..60398)
/locus_tag="Cpha266_0055"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ2; Region: rSAM_NirJ2; TIGR04055"
/db_xref="CDD:188570"
misc_feature complement(59826..60392)
/locus_tag="Cpha266_0055"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(59883..59888,59970..59972,60093..60095,
60159..60167,60237..60242,60246..60248,60348..60356,
60360..60362,60366..60368,60372..60374))
/locus_tag="Cpha266_0055"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(59430..59693)
/locus_tag="Cpha266_0055"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene complement(60768..62186)
/locus_tag="Cpha266_0056"
/db_xref="GeneID:4571248"
CDS complement(60768..62186)
/locus_tag="Cpha266_0056"
/note="PFAM: peptidase M12A, astacin;
SMART: peptidase, metallopeptidases;
KEGG: rde:RD1_1303 zinc metalloproteinase nas-13
precursor, putative"
/codon_start=1
/transl_table=11
/product="peptidase M12A, astacin"
/protein_id="YP_910550.1"
/db_xref="GI:119355906"
/db_xref="InterPro:IPR001506"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR006026"
/db_xref="GeneID:4571248"
/translation="MARKKNGNTPQEYGEFSPSGKLRTAIIEGNTFGYKSVQYTDVDG
MAMFEGDIILGKVADVDSKTEQRKREIQQGVTLRGITITGAKYRWPNCKVPYTIDTAL
PNQSRVTDAIAHWEAKTKFRFILRTNANASSYPDWVTFRSGSGCSSYVGKQGGQQYIN
LASGCSKGNTIHEIGHTIGLWHEHSREDRNAFVTIHWDKIIAGYEHNFNQQISDGDDV
GAYDYGSIMHYPRTAFSTDGSETITPTDPSASIGQRTALSAGDIAAANSLCPTVSLCP
AAPKTCPGAPIQVCPVSPKLVCPPGIKLACPPGIKQLCPPGIKQSCPSAPIQVICPPG
IKLACPPGIKVTCPPVPKIPICPPSPVPGCAAGPTNKPWVGPEGYTTTYRLDPASGAY
YSDEAPPPGMNQMPPVVININFHGYQPPSIQSDYAQYDPSAYENQDWTATEYPDPGEE
ADDSITNEESEAPEDFNPECSE"
misc_feature complement(61374..61928)
/locus_tag="Cpha266_0056"
/note="Astacin (Peptidase family M12A); Region: Astacin;
pfam01400"
/db_xref="CDD:201773"
misc_feature complement(61383..61916)
/locus_tag="Cpha266_0056"
/note="Zinc-dependent metalloprotease, astacin_like
subfamily or peptidase family M12A, a group of
zinc-dependent proteolytic enzymes with a HExxH
zinc-binding site/active site. Members of this family may
have an amino terminal propeptide, which is cleaved to...;
Region: ZnMc_astacin_like; cd04280"
/db_xref="CDD:58580"
misc_feature complement(order(61500..61502,61641..61643,61659..61661,
61668..61673))
/locus_tag="Cpha266_0056"
/note="active site"
/db_xref="CDD:58580"
gene 62761..65244
/locus_tag="Cpha266_0057"
/db_xref="GeneID:4571249"
CDS 62761..65244
/locus_tag="Cpha266_0057"
/note="KEGG: noc:Noc_0380 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910551.1"
/db_xref="GI:119355907"
/db_xref="GeneID:4571249"
/translation="MAAYDLLDKSENPHRAAELLLEAGSLVDGEAEPKKWAAFRQLYA
QYSETSDPEAAITAYRDALSVWDPVLDRDAWVACHSGIGSLMVNLQPFGPKELDEAVM
HLESAVQAQPFLSSMLAVLYRFRSAGDPRENWQKRVHHLRQALLLIDRDEEPCGWAAA
NNELAIAIGDEPDADFGAALEERLRLHLESFGLLEGNKDDTWIDTCLSLSECYLFRGG
IDDRENQEQAERYARLALDAAGTEVSGPLRAEVLLNLARVLMAPGRFFDADRIRQCLS
CCDESAALIDPVRSPALMASVESFRANALLKLIQNGEPCDEERLAAHAEAALALLPGV
EHTSSRRSILQVAGEGMLAARHDERAAGYFREALDAAASALLFAESREGRMQRIWEFR
DTSALLAWSLLKLGDKENALVELEKGKGRFWRTDDEALSVAAIRSIVPSGGALLVANF
SCREGAVIVVTGERIEIVWLPSFGKDRLMALQRGGLDVASPGGWLRAYHMRNSEHEAW
RRMIEETGETLYRELWEPVLDLLQDMGIADDAELVWFPQGGSGVFPVHAAWRQDSDGS
KRWLIDRFTVRYAPDFQVLLSGESGVGCASGSLLLVANPCGDLDFSELECAWVRQYHT
GRELKLLHGIDATPDAVLDAIGSAGIVHFSTHAIFDLNRPLCSALLLAGGEPLSLERL
IPALEQKAPYLVVLSACETAMSRISSTPDEFLGFPAAFLHSGVRTVLATLWPVDDAAT
AVLTGRFYRELAVNNHSPSRALREAQNWIRSVTALELMELMREMKNAPPPAGPLAGRI
RTALRAFDPELKPFASPYYWAAFTISGKE"
misc_feature 64297..65235
/locus_tag="Cpha266_0057"
/note="CHAT domain; Region: CHAT; pfam12770"
/db_xref="CDD:205066"
gene 65249..66577
/locus_tag="Cpha266_0058"
/db_xref="GeneID:4571250"
CDS 65249..66577
/locus_tag="Cpha266_0058"
/note="PFAM: protein of unknown function DUF900, hydrolase
family protein;
KEGG: ter:Tery_2076 protein of unknown function DUF900,
hydrolase-like"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910552.1"
/db_xref="GI:119355908"
/db_xref="InterPro:IPR010297"
/db_xref="GeneID:4571250"
/translation="MTELVQQLALLDALLSNWDGVLVRMGAPDVLRDEALAALAVKLS
SAESPDDLDLLLDDLFDLVEDTPAYDYVRGLIARARLDTGTVAKTRGGYAGELVSDDE
KSLLFGASRLAGRALGNAVSADVEPCQVEVFFATNRKSSDASDLQFTGEHDAGGYTCG
VAHVTIPVGVHRAGVLEGKRWWHLLREKDDSRRYVVLGSVEKLAEDLFTTRIVEGAPE
CRDLLVFLHGFNVTFEDAARQAAQFAFDLQFQGRVVLYSWPSLGSLAGYCADEERAFL
SNGRFAGFLGMLEDGPWDKVHILAHSMGNRVMLYGLSGNSWPNGRISQVVFAAADVYV
ETFRELFPKIREKAALYTSYTSKKDRALLISGILHKAKRIGISRGEPFVMDGLETIDA
SKVDNGFPGHGYFAEETKLIEDISQLLGKGLSAGRRKLYQPPSKAYWDFR"
misc_feature 65585..66532
/locus_tag="Cpha266_0058"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4782"
/db_xref="CDD:34393"
gene complement(66590..67027)
/locus_tag="Cpha266_0059"
/db_xref="GeneID:4571251"
CDS complement(66590..67027)
/locus_tag="Cpha266_0059"
/note="PFAM: SH3, type 3 domain protein"
/codon_start=1
/transl_table=11
/product="SH3 type 3 domain-containing protein"
/protein_id="YP_910553.1"
/db_xref="GI:119355909"
/db_xref="InterPro:IPR013247"
/db_xref="GeneID:4571251"
/translation="MAEENKNFWGTIPGILTGIGTVLTAATGFYMAISGGSPTAKHKP
EASAPPATAVMQATVQTTPAKEEVTPHLQDIFILKAVIDDPDGFTNVRSMKSSSSSIV
AKVTRNEQFHTYLQDGSWWQVKTADGKIGYMHTGHIRILQDPR"
misc_feature complement(66611..66760)
/locus_tag="Cpha266_0059"
/note="Src Homology 3 domain superfamily; Region: SH3;
cl17036"
/db_xref="CDD:213143"
gene 67352..68095
/locus_tag="Cpha266_0060"
/db_xref="GeneID:4568798"
CDS 67352..68095
/locus_tag="Cpha266_0060"
/note="PFAM: regulatory protein, TetR;
KEGG: sma:SAV1468 TetR-family transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_910554.1"
/db_xref="GI:119355910"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4568798"
/translation="MTTMARPFKALQMPNLSESIKEAAWRQINEFGASSLSLRKIARE
LGITAPAIYNYFPDRDALVTALIIDAYASFGDCQHEAGQAHPGQGREIERLKATGLAY
RKWALVHPLRYLLIFGNPVPGYVPPMQKLLPVMMRSLGTLVGIIAELHVLGRLHIEGV
PLPMLKPGNRFFALMETADEGMHAVYAVAMLIWSRVHGLVSLEITGQQLPFAEDGAAL
YLFELDSICRQFVRSPESAPDATGFSSNH"
misc_feature 67361..>67741
/locus_tag="Cpha266_0060"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 67415..67549
/locus_tag="Cpha266_0060"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 67637..67972
/locus_tag="Cpha266_0060"
/note="WHG domain; Region: WHG; pfam13305"
/db_xref="CDD:205485"
gene 68108..68572
/locus_tag="Cpha266_0061"
/db_xref="GeneID:4568799"
CDS 68108..68572
/locus_tag="Cpha266_0061"
/note="KEGG: rso:RSc0451 probable transmembrane protein"
/codon_start=1
/transl_table=11
/product="putative transmembrane protein"
/protein_id="YP_910555.1"
/db_xref="GI:119355911"
/db_xref="GeneID:4568799"
/translation="MKKTIVAGLAGGMAMNLAMLLTFRTLGFGWDGKGILLTSPMQSH
KLIAVWTEIQPLPLVVNTPLPIILGLMLFGIGHAFIYRSVASAWPAGVLPRAMRMSGL
IFFMTFLFWEFFTPFNQFGEPLPLIALELSFWVVIATAEGIAIAWVMERRTA"
sig_peptide 68108..68170
/locus_tag="Cpha266_0061"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.952) with cleavage site probability 0.305 at
residue 21"
gene 68569..69876
/locus_tag="Cpha266_0062"
/db_xref="GeneID:4568800"
CDS 68569..69876
/locus_tag="Cpha266_0062"
/note="PFAM: NADPH-dependent FMN reductase;
KEGG: cac:CAC0756 multimeric flavodoxin WrbA"
/codon_start=1
/transl_table=11
/product="NADPH-dependent FMN reductase"
/protein_id="YP_910556.1"
/db_xref="GI:119355912"
/db_xref="InterPro:IPR005025"
/db_xref="GeneID:4568800"
/translation="MKALIFDGSPEGDSTGGRLAEVLAELLAAKGYETGHIVLRQKTI
GNCNGCFQCWLKTPGICVLDDDNRELSQRFIGSDLLILLTPVTFGGYSPELKRMLDHF
IANVSPFFMTVNGETHHRNRYAAYPDLLVIGWLDQPDRVQESLFNHLAWRNSINFYAK
RSSWGIIERSAGSVVLRQKLADLFQGLDSPAERVEMKLPDVAAVSGKSGPPRKALLLC
GSPRMAKSTSDSLGGYLLDRLEAQGVETQTIYIYKMLHDGRKVQQMLDAVDSTDLCIL
AFPLYIDSLPAPVLSALRMIKEHRKARPAQGGFAAIANCGFIESAQNENALAACEAFA
GASGFNWMGSVSVGGGEGLVHGRPLAELGGPAIPYRRALDSVAQFLAAGKPVPEDARR
QLGRPFVQSWIFRFFGSRNWKKRARQNGVLHKLNDCPYQPSAR"
misc_feature 68569..69021
/locus_tag="Cpha266_0062"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
pfam03358"
/db_xref="CDD:202604"
misc_feature 69211..>69447
/locus_tag="Cpha266_0062"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:212217"
gene 70230..72956
/locus_tag="Cpha266_0063"
/db_xref="GeneID:4568801"
CDS 70230..72956
/locus_tag="Cpha266_0063"
/note="KEGG: aor:AO090010000188 predicted protein Pfam:
MACPF CHMI PROSITE: SER_RICH"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910557.1"
/db_xref="GI:119355913"
/db_xref="GeneID:4568801"
/translation="MPKKNAGTPAKKVKDALPSAGSSTAVKLATGSSGTPAAPSAGSS
ATVKPATGSSGTPAAPSTGSSTTGKPASGSPATGTPATGAQSSGTPPSGTGTAPAAVA
SQTTAGAWLSKNQAADYIQRFQDAGYDDLSDLLPEIIRTVLQSEKPGVVDRLVRIRTQ
ELRQPQPLPAPALKPGMEMDLSAPVLKGMDGISIKLPDLGFAPGPDKRGDVVSPASMT
DEDWLALAINSDMLMGLDLENFFEGESSTPQECFAPALWWKVPASREFFNCEHLSAKI
NTEITYTSKSATMVSAGFTSVTASVSTPWVSASVSHEKSYRNAQSSKISTLYIVGMYD
LDRVRVDLDECTVVSPRFVAAVENALADPNPKDALAKVFQKYGQIIGRQITLGGRLFF
VHVKEEMENSRIETLKSTTSAAIAGAYGAFGGSGSVSFGSSSEKQESSQSMNEKIAFQ
AIGGDVTLANEPEKWKDTIKSPAMWEVIRYDKIRYTYELLSPELRELVLMYWERPMGS
DEGPIVLPKAKVETMKSSDGVAITGFKIHFGQKVPGLSMRYYATSEDGSFYDWVNEGK
LCGTESNGASPLQDFLVELTGGLARRYELHYRAMRADDTFTEWVSGTKICGAKGMKIK
DIQAVLSPLGGGIVRIPAESFIPSEGKGTYDIGKYGTGIVNAAVPGEWVLTYQCQYTG
SKPVRRRLEALFASANESRPVKVEFNGAIVNGAALEYATGAWDTSGLRTARIGTVTLL
PGMNTLKISRPGPGSPHMKEFRLVAEVIDIPATSFIGTTPLGKNNYGLGVIDSGACGN
SVTVPYEFTFTGKKPTTLMLEGVYTAMDSRPVDIVINPEDEKPQTFSKVMATVTGSWW
KDRQRVETIGDVIVRPGKNTLMLRTTKNALPHIQEFRLVSKETFFDFDPDAD"
gene 73902..74390
/locus_tag="Cpha266_0064"
/db_xref="GeneID:4568802"
CDS 73902..74390
/locus_tag="Cpha266_0064"
/note="KEGG: cch:Cag_0441 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910558.1"
/db_xref="GI:119355914"
/db_xref="GeneID:4568802"
/translation="MSVSMKSWATPLAIGSFIILAVTGILMFFKIEGGYIKPVHEWLS
WAMVAGVLLHIFANWKSFLAYFSKIPAVSIISIGVIVTALAVFMPASRDGGNPKMKMM
KAIESARLETVAEISGKESSEIVAALKEKGIMVDDPTMTVRQIARTNNKEAMEVLGVV
FR"
sig_peptide 73902..73967
/locus_tag="Cpha266_0064"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.702) with cleavage site probability 0.686 at
residue 22"
misc_feature 73914..74078
/locus_tag="Cpha266_0064"
/note="Domain of unknown function (DUF4405); Region:
DUF4405; pfam14358"
/db_xref="CDD:206526"
gene 74997..75524
/locus_tag="Cpha266_0065"
/db_xref="GeneID:4568803"
CDS 74997..75524
/locus_tag="Cpha266_0065"
/note="KEGG: gvi:gll3454 unknown protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910559.1"
/db_xref="GI:119355915"
/db_xref="GeneID:4568803"
/translation="MKRALSAIGFHGTSKSNYEGIKRQGFLLSDNSYDWLGVGFYFFQ
DAPNRAKEWAKRHEDPIIIGAEISLDHCMDLLDNVWYELLHRVFIAYEGACRKKNIPM
AIQTPGNHRRDKIVIDMAVRALAERGFSVKTVRSVFKEGPECFQNSALTTQNHVQIAV
RDISTIVDFWSEELN"
gene 75533..76708
/locus_tag="Cpha266_0066"
/db_xref="GeneID:4568804"
CDS 75533..76708
/locus_tag="Cpha266_0066"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910560.1"
/db_xref="GI:119355916"
/db_xref="GeneID:4568804"
/translation="MDHNEIQNIVLDYVNSLSKDELERYNHDPKYDGEDAGAFGLAEY
SLEQKYDRCKKVLSITRSAVCANQGQLVQFMFLAAEKHKALRVLMQAPQRRDAGLIKE
KILELRDYIDFHLKKNIDRNIEYIYQYFDGRCDIKPRICIKGKSVVDKKHQIIRIFSD
KSLQYNSNVDIDKSSAYKYIKDNGRYYLQNDIPGSVKRNTYENSRLDIDKINHYMSID
ADLNSVWSNCWKNSPIDERNGLSFYKSTLIIPVTLLNNALDKEFVYEFNSKIDKEVGE
SVINPNEIERTIFAFLCIDHVEKWYFDEEDDVRIGYMIADLISFYLFLRVMYIEISDV
FANACQYLNECGVDITINKHVYAPVDEDLSAECVTGEDEYSKTNNNLIASISGLIAD"
gene 76875..77174
/locus_tag="Cpha266_0067"
/db_xref="GeneID:4568805"
CDS 76875..77174
/locus_tag="Cpha266_0067"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910561.1"
/db_xref="GI:119355917"
/db_xref="GeneID:4568805"
/translation="MRTRLRNCTISDIVLVCRSIFTSCQKSCELYSFSRDLNTSLFQK
ALIIEAAGNFKGLFCLLCVKSRCFPAVLVIKKAFSVSLQFVKKVWLAERLHQQQG"
gene complement(77474..81076)
/locus_tag="Cpha266_0068"
/db_xref="GeneID:4568806"
CDS complement(77474..81076)
/locus_tag="Cpha266_0068"
/note="PFAM: metallophosphoesterase; protein of unknown
function DUF323; NACHT nucleoside triphosphatase;
KEGG: cch:Cag_0856 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910562.1"
/db_xref="GI:119355918"
/db_xref="InterPro:IPR000767"
/db_xref="InterPro:IPR004504"
/db_xref="InterPro:IPR004843"
/db_xref="InterPro:IPR005532"
/db_xref="InterPro:IPR007111"
/db_xref="GeneID:4568806"
/translation="MAVTWLHVSDFHLSDKGPYDQEVILRSLVESIRHFRENENREPD
LIFATGDIAQYGKAKEYEKATNFFDDLLDAAGLNRDRLFIVPGNHDVERKMGKGLTRT
LETNDDADEYFDPNTPTPHLTQKFHAFSEWYNDYFKTIRSFPTNTTCSPVELVTINGL
RLAVLPLNSALFCIDDHDHKKLFIGRRCLDAARKLLEAADLKVALIHHPLDWLSPIEQ
SNIEAKLEESVDILLQGHYHQTSTKSIIAENGGYLKLAAGAAYQTRQWPNTAMYATFD
GSGVTIFPIRYEDKPKERWTLDTSLYPSPSYTRQYPIPGRVASRQDSLLPSCACDRGM
NPDTGCPEIKSYERYREALRNLFGIVASRGLDNYQDIEIPLEDVFIDLHIRELCGNVD
AHDKGHTIETKKMSQDALLQEIFHGNARTNVLLLIGDPGSGKTTLLQHYAMLCLEGDH
GRLFPEAASVRVLFLELRKLNFDAHNKPVRLAAQIVELNRSLSLAADEAETWWREMSE
RERVLVLLDGLDEVTELEKRKAICQWIDEEGHAYPNRFFIVTTRKTGYVTSDGVELIQ
SHRRAALDDLLPDQQWDFLLKWFRAASKFEKERGFTIHDNTPPDDKARELYAYLYPQE
GDKGEEMSSEETEKKKKGLQQIAGIPLLLKLMALLYKLRDFKPDSRIALYRVVIVYLL
HGRDNARQISYGIDPEQSATVLGLLAYTMQKKTCLDLSEGEMKEIMESRFRLLTTTVG
LDTFFGFMVNRSGILKPNGKAFRFWHKTFQEYLASLEMLRCSKSDAFIRSIVQHYDDR
KWEWDETLRFYFAQIDADIFDSFMNQLFNPEITTDVLQRKLQLMKTLIRESRECSTGA
LCQKLKDSKLSLGVQWHVLDCLEVINKSAALDAVRNFHERTKQTYEPDDNLKQRVLDK
ADGLINQLERTAGINRNLPPKEKEKTKHDSQPKQRPRIISNTYEDDAQYILIPKTNEE
KREESIYFSKYPVTNKRYRSFIAALKKDAALQKQINDIAQNNRWDSKFAPWLKEGKND
LVALFRSKYDEDRKFGGDEQPVVGITWYAARTYCLWLSLMASNGQDTSRYRLPTEWEW
EYAAAGKEKRAYPWPKKKGEPNSTLLNYNDNVGATTPVGSYPEGATPEGLYDMAGNVW
EWTDSWWDDTTRSTRVLRGGGWNDDARHCRSAYRILVTPDLRLNIAGFRLAFVP"
misc_feature complement(<80804..81064)
/locus_tag="Cpha266_0068"
/note="Bacillus subtilis YydB and related proteins,
metallophosphatase domain; Region: MPP_YydB; cd07400"
/db_xref="CDD:163643"
misc_feature complement(<80789..81061)
/locus_tag="Cpha266_0068"
/note="Predicted phosphohydrolases [General function
prediction only]; Region: Icc; COG1409"
/db_xref="CDD:31599"
misc_feature complement(order(80810..80815,80924..80926,81041..81043,
81047..81049))
/locus_tag="Cpha266_0068"
/note="putative active site [active]"
/db_xref="CDD:163643"
misc_feature complement(order(80813..80815,80924..80926,81041..81043,
81047..81049))
/locus_tag="Cpha266_0068"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163643"
misc_feature complement(80342..>80470)
/locus_tag="Cpha266_0068"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature complement(<78521..>79840)
/locus_tag="Cpha266_0068"
/note="Predicted NTPase (NACHT family) [Signal
transduction mechanisms]; Region: COG5635"
/db_xref="CDD:35194"
misc_feature complement(79301..79813)
/locus_tag="Cpha266_0068"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(77486..78163)
/locus_tag="Cpha266_0068"
/note="Formylglycine-generating sulfatase enzyme; Region:
FGE-sulfatase; cl15394"
/db_xref="CDD:199530"
misc_feature complement(77486..>78151)
/locus_tag="Cpha266_0068"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1262"
/db_xref="CDD:31454"
gene complement(81122..81469)
/locus_tag="Cpha266_0069"
/db_xref="GeneID:4568807"
CDS complement(81122..81469)
/locus_tag="Cpha266_0069"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910563.1"
/db_xref="GI:119355919"
/db_xref="GeneID:4568807"
/translation="MKKSISGSNRRGKAGDITMQFKPVHYLGKVPMSGETGVPLFAVV
MAERSFSSFAGLGASPGFLNRRMNCRLAAQKTLIPASLLACMIDNRRINKRLYSFMQL
RPPCFTLCFLSQP"
gene 81714..81941
/locus_tag="Cpha266_0070"
/db_xref="GeneID:4568808"
CDS 81714..81941
/locus_tag="Cpha266_0070"
/note="KEGG: pol:Bpro_0451 helix-turn-helix protein, CopG
family"
/codon_start=1
/transl_table=11
/product="CopG family protein"
/protein_id="YP_910564.1"
/db_xref="GI:119355920"
/db_xref="GeneID:4568808"
/translation="MKTKEFDKAFDQGKDVTVYLDLGKASRVKQQHKRVNVDFPVWMI
DSLDKEATRLGVSRQSVIKVWLAERLQQQKG"
gene complement(82008..83015)
/locus_tag="Cpha266_0071"
/db_xref="GeneID:4568809"
CDS complement(82008..83015)
/locus_tag="Cpha266_0071"
/note="SMART: helix-turn-helix domain protein;
KEGG: dsy:DSY4506 hypothetical protein"
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="YP_910565.1"
/db_xref="GI:119355921"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:4568809"
/translation="MKSPMSGREMTLIKEARTMIFRKKEYPVCYHVYHCNDTQQQFTS
TELDEINLVQVYNQYRDEHNLPFPEEIRSIREAYGLSAAKMAEVLGLGTNTYRNYEQG
EVPSESNARLIQVAQDPEEFRKIVCLSCALKGNQLEKLNARIQHLIENRKKTTCIDIE
EYLMGSKLPDEYSGYLKPSLEKLGEMVVFFAEKLKPWKTKLNKLLFYADFLHFKRSGF
SISGTRYCAIPLGPVPDNFNSIFEWMEKKGALAIIEQEFPDGGTGERFFPAESRSFDE
RKFSAKELDTLNTVAFAFLKTGTKEIIAISHNENAWIENIHAGNGMISYLRYGFDLKA
L"
misc_feature complement(82638..83006)
/locus_tag="Cpha266_0071"
/note="putative zinc finger/helix-turn-helix protein, YgiT
family; Region: CxxCG_CxxCG_HTH; TIGR03830"
/db_xref="CDD:163542"
misc_feature complement(<82677..82811)
/locus_tag="Cpha266_0071"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(82713..82715,82788..82790,82800..82802))
/locus_tag="Cpha266_0071"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(82716..82718,82791..82793))
/locus_tag="Cpha266_0071"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(82710..82715,82725..82727,82734..82736,
82767..82772))
/locus_tag="Cpha266_0071"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature complement(82074..82415)
/locus_tag="Cpha266_0071"
/note="Protein of unknown function (DUF4065); Region:
DUF4065; pfam13274"
/db_xref="CDD:205454"
gene complement(82993..83373)
/locus_tag="Cpha266_0072"
/db_xref="GeneID:4568810"
CDS complement(82993..83373)
/locus_tag="Cpha266_0072"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910566.1"
/db_xref="GI:119355922"
/db_xref="GeneID:4568810"
/translation="MTATKHQVHAFLRDFKNKLKIWSIVFRDDRGKNAQTLLDLEIRP
VDRQKIIEDLDAEDYSEGPIDDIMNKGPEMWVFGKEVKRCEIYIKITKVSPDASVICI
SFHIAEHRISYPLKTQCHEKPDER"
gene 83897..85186
/locus_tag="Cpha266_0073"
/db_xref="GeneID:4568811"
CDS 83897..85186
/locus_tag="Cpha266_0073"
/note="PFAM: DNA methylase N-4/N-6 domain protein;
KEGG: cch:Cag_1099 DNA modification methylase-like"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_910567.1"
/db_xref="GI:119355923"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002295"
/db_xref="InterPro:IPR002941"
/db_xref="GeneID:4568811"
/translation="MNLLPDSSVHLIITSPPYWQLKDYGTENQIGFHDSYESYINNLN
LVWSECERVLHPGCRLCINIGDQFARSVYYGRYKVIPIRTEIIRFCETIGFDYMGAVI
WQKVTTTNTTGGASIMGSFPYPRNGILKLDYEFILLFKKQGDAPKPSKELKERSAMTT
EEWNTCFSGHWNFAGAKQDGHIAVFPEDLPHRLIRMFAFVGETVLDPFMGSGTTSLAA
KNLDRNSVGYEINPEFIGIAREKLNSNQTDFAGTEYVFQHDTLKGDISEMIERLPYRF
QDPHKLDKKIDPRKLTFGSRVEKGGGAKQEETFIVREILSPEMVRLSNGLTVRLIGVK
EDPFTREKAVGYLVDKIKGKRIFMKYDSMKYDGRNNLLCYLYLENRTFVNAHLIRSGL
VGIDGSYEYRYKQKFLAFSDENSTLVQTGRWSGIAAK"
misc_feature 83897..84634
/locus_tag="Cpha266_0073"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature 83921..84616
/locus_tag="Cpha266_0073"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(85239..85511)
/locus_tag="Cpha266_0074"
/db_xref="GeneID:4568812"
CDS complement(85239..85511)
/locus_tag="Cpha266_0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910568.1"
/db_xref="GI:119355924"
/db_xref="GeneID:4568812"
/translation="MRIENLDDVAEFARTVILNGVNLHPDDDFRNYVNIETGQPTYTE
EEASAYNRNMANAFSICDKCGVDIYGFMQKIFLVETGLDKVIPMPD"
gene complement(85805..86278)
/locus_tag="Cpha266_0075"
/db_xref="GeneID:4568813"
CDS complement(85805..86278)
/locus_tag="Cpha266_0075"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910569.1"
/db_xref="GI:119355925"
/db_xref="GeneID:4568813"
/translation="MKMPSTAKLIADLLYDYENEPETTFGDLVDGIEDLSIETGDLEL
SLAISKYRIEERYDRKYLGMRGDMDSVEADFIEAVRLLAFGRTFSEDRNASANFDNWD
YTLINSTIEKGQPYPAVLIYKVIGAREHELPLLEKAGYTLFNDTYLPPSAGKTSD"
gene 86782..88353
/locus_tag="Cpha266_0076"
/db_xref="GeneID:4568814"
CDS 86782..88353
/locus_tag="Cpha266_0076"
/note="PFAM: Integrase, catalytic region;
KEGG: bfs:BF1534 putative transposase for insertion
sequence element IS21-like"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_910570.1"
/db_xref="GI:119355926"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:4568814"
/translation="MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRM
TDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTR
TIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRG
AILYTEAFRKYLLHRSLKIHLCRKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQ
EALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNT
ISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNN
HRRDTSSKLRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQK
LIDDALAHCVDHHLFSSGEFHDILHHYRKQEEKQSHQAVFNTFRPKTLRSDMDRMLSF
VPDSSGITTYENIFS"
misc_feature 86836..87675
/locus_tag="Cpha266_0076"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature 87250..87558
/locus_tag="Cpha266_0076"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 88359..89195
/locus_tag="Cpha266_0077"
/db_xref="GeneID:4568815"
CDS 88359..89195
/locus_tag="Cpha266_0077"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: bfs:BF1535 insertion sequence IS21-like putative
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="IstB ATP binding domain-containing protein"
/protein_id="YP_910571.1"
/db_xref="GI:119355927"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4568815"
/translation="MERTITTIQEHARELNLTGLAGTVDLLLEEARKSEPSYSDFALT
LLESELSCRRKAHLERRRKIANLPLLHDLDHYDSGVQNGISQVQLQQLRQLLWLDQNF
NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRL
LSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLA
TALLDRLLYKCEVIKLTGKSYRLEHRTTIFEQQQSPEGGGNRRKKQLPLQKGVGNHCK
MT"
misc_feature 88392..89090
/locus_tag="Cpha266_0077"
/note="transposase; Provisional; Region: PRK06526"
/db_xref="CDD:180607"
misc_feature 88665..88973
/locus_tag="Cpha266_0077"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 88680..88703
/locus_tag="Cpha266_0077"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(88683..88706,88863..88865,88962..88964)
/locus_tag="Cpha266_0077"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 88851..88868
/locus_tag="Cpha266_0077"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(89710..91446)
/locus_tag="Cpha266_0078"
/db_xref="GeneID:4568816"
CDS complement(89710..91446)
/locus_tag="Cpha266_0078"
/note="KEGG: ecp:ECP_4570 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910572.1"
/db_xref="GI:119355928"
/db_xref="GeneID:4568816"
/translation="MTIMSEITSSFNDFILKSVSRYLQTVVLIDDKIYPPKAVRTPTD
LQEPPSRHRKAASKSAEPVLEKKEVIDKLAEEIDQSEEVSFHDIQNSFAEKRIICSLY
QPKQGASFNSSSDVYNLCSVADVVVVDWDIHGDSGKKATELVVTLIEQSMKEVPHQLR
LVLIYTMDPNLGSVANSVYEAFSSQIDTALIDVLEDGNGLVFTSENARVVVLGKKINT
AFLQYSDFFVPEKDLAERTINEFSHLASGLLQCIILQGIASLRENNRRILMRFHKGLD
AAFLAHRALLMPDEAFGQIIPMLTDELRAVLEDNLGEHPLGDEIISKEIISDWCNKHW
KPVTVSDLQIGSSVDPTAFAIDVFCNGSNIADYSKYRGSRISGMLEMKDGLNKWKEKK
CDLLAEYLSSDEKGNFSHEMLSALMSQRIAYENSRKSLRLGVILRIKITEKPRYMLCL
QPVCDSVRVNEKGTPFIFCLLDVPNNGSIFTHTVKDSSDSTIRLVYKAKVTNCYISLF
SSNTGVVCASENGEGQFIFKDTEDKEYEWVAELKIEHAQRAAEEFGRILSRVGLNESE
WLRLKTKQLNNQ"
gene complement(91430..94393)
/locus_tag="Cpha266_0079"
/db_xref="GeneID:4570646"
CDS complement(91430..94393)
/locus_tag="Cpha266_0079"
/note="PFAM: ATP-binding region, ATPase domain protein
domain protein;
KEGG: ecp:ECP_4571 hypothetical protein"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_910573.1"
/db_xref="GI:119355929"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4570646"
/translation="MAKFRTKARAVDMLGRQQIADASTAISELFKNAHDAYADNVEVD
LFKSDSLLVIRDDGIGMSPSEFEANWLVLGTDSKFSSAGKLHAYRPSNKPERAVMGEK
GIGRLAIAFLGPQVLVLTRSEKLDHNDTLTMCYLHWGLFEQQALNLDDIDIPVKSISG
GELPSLQDVSELLLENTRNVEQLQKRFPQCDLCSIIDDLSDFQVDPRDFEKSVQGLSL
SDHKCGTHFYIATANEVIIADIVAEKYTLTKEFTKCLLGFCNSTFAETSPPPIQTKFR
YWPTDNRYEDLIAPNEFFTTDDLALSDHFVSGEIDEYGQFNGIVRVYDQEYPDHVISW
KEGGGKPTECGPFRVEFGYLQGAHRESMADPDDWSILDSKLKQIGGLYVYRDRIRILP
YGNSNVDWLDIELRRNKGMGYYYFSYRRIYGAICTTRKENATLREKAGREGFQKDKAY
RQLKSVLENLFIQLAADFFRKDATHGDYFQERKDELDRLERARRKREQQITTKRTKLS
DTLDVFFSKVNERIPESEIATLSHHVQSRMQSASFMMDSDTASQELLDAEREANEKLA
LLRTTYTLIRPRGVGLTKQLTRDWDAYQREHNRLEIEVFEPFVKDVGKKLGSMAAQAK
IYIDQRRRLQELIKNVADEQNANVKNESKVLQETSSQTRRAAVNTARSAMKELRDTIE
AVNADLAHRDLNDLLPEQIEEIRSTYEKRIDSVASRNAETLGSVRELLAGIVESLENN
MQNSQLDIVEAMDTELESLREQAETDEELVQLGLAVAVINHEFVAAIKMIRGQLRELR
SWAMVNKDLLPVYQEIRTNFDHLDAHLNLFTPLQRRLYKKRVNIEGKEIIHYVRALFN
VRFERHKIHLEATQAFLDSHVTSYPSTIYPVFVNLIDNFIFWLKDKQGDRLISLDCTD
NSYHIKNNGPAINRRDAESIFEQGFSRKPGGRGLGLYISKKVLEKEGMTLALDKTLTM
DSGVSFNLSWSDNNE"
misc_feature complement(93911..94324)
/locus_tag="Cpha266_0079"
/note="Histidine kinase-, DNA gyrase B-, and HSP90-like
ATPase; Region: HATPase_c_3; pfam13589"
/db_xref="CDD:205767"
misc_feature complement(91454..92251)
/locus_tag="Cpha266_0079"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(91502..91735)
/locus_tag="Cpha266_0079"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(91544..91555,91616..91621,91625..91627,
91631..91633,91637..91639,91703..91705,91712..91714,
91724..91726))
/locus_tag="Cpha266_0079"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(91712..91714)
/locus_tag="Cpha266_0079"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(91547..91549,91553..91555,91619..91621,
91625..91627))
/locus_tag="Cpha266_0079"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(94386..95501)
/locus_tag="Cpha266_0080"
/db_xref="GeneID:4570647"
CDS complement(94386..95501)
/locus_tag="Cpha266_0080"
/EC_number="2.1.1.37"
/note="KEGG: ecp:ECP_4572 modification methylase;
TIGRFAM: DNA-cytosine methyltransferase;
PFAM: C-5 cytosine-specific DNA methylase"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_910574.1"
/db_xref="GI:119355930"
/db_xref="InterPro:IPR001525"
/db_xref="GeneID:4570647"
/translation="MNQQSEPTCSKIRVYDFFSGCGGTSVGFGRAGIQHALAVDSCSD
AISTYQKNFIGVPVITDPIETLNVDRIQNYFSHNPEVKLFCGCAPCQPFTKQKTNTKK
DAASDDRRGLLIYFSDIVHACLPELVFVENVPGLQKFSLEDGGPLAMFISRLKQNDYF
VDFDVIAAQDYGSPQVRRRFVLIASRLGKITLPAPTHGPNTKNSYVTVHDAIGNLPSV
KHGTEHPDNQNYPNHRAAMLSALNLERIRHTGANGRRDWPERLLPKCYAQKKDGKRYE
GHSDCYTRLAWGEPAPGLTTRCISYSNGRFGHPEQDRAITIREAAKLQGFPDDFIFTG
SLNSMARQIGNAVPVSVAEVFGRHFLNHVKAMESTNG"
misc_feature complement(94416..95474)
/locus_tag="Cpha266_0080"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dcm; COG0270"
/db_xref="CDD:30619"
misc_feature complement(<94866..95468)
/locus_tag="Cpha266_0080"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature complement(order(95235..95237,95241..95243,95310..95321,
95376..95387,95433..95450))
/locus_tag="Cpha266_0080"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature complement(order(94965..94967,94971..94973,95100..95105,
95109..95111,95175..95177,95193..95195,95202..95204,
95214..95222,95229..95234,95241..95243))
/locus_tag="Cpha266_0080"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature complement(order(94965..94967,94971..94973,95103..95105,
95109..95111,95220..95222,95232..95234,95241..95243))
/locus_tag="Cpha266_0080"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
misc_feature complement(94431..>94667)
/locus_tag="Cpha266_0080"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(95816..97117)
/locus_tag="Cpha266_0081"
/db_xref="GeneID:4570648"
CDS complement(95816..97117)
/locus_tag="Cpha266_0081"
/note="KEGG: lpf:lpl0144 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910575.1"
/db_xref="GI:119355931"
/db_xref="GeneID:4570648"
/translation="MKNKGCRTIYAKVLAANDNRKQQVYFGGDFQAINIIPFDTIAPD
PDKPHIFKAPLNFWWLSDDESLHNASRAQLILYPQYPEVRFSGFLQGCSAAPSELMDE
RLRLAGRILFLGISPDGRIIGYLCHPESELAREFVSLGELPRSGVFLEPGLGTGVLDD
RSLLIEKLRVIHQKGWIRSRKLGSNGVILPCEAPNCGGMTLEAELDIIPNSRSEPDWL
GYEVKQYNVTNFQRINSGVLTLMTPEPTGGYYRSAGIEAFIRKFGYPDMTGAADRGDR
LNFGGIHKVGEYHRLTSLQIVLKGFDAIKGKITDATGGISLMNIEGEEAAVWGYAEVM
AKWNRKHNKAVYIPSRCVQSPERRYWYGNLIRIGTGTDFLKYLQAMAEGKVYYDPGIK
LENASTTPRTKQRSQFRIKSSNLPALYHSMDIVDLNEEQSE"
gene complement(97065..97595)
/locus_tag="Cpha266_0082"
/db_xref="GeneID:4570649"
CDS complement(97065..97595)
/locus_tag="Cpha266_0082"
/EC_number="3.1.-.-"
/note="PFAM: DNA mismatch endonuclease vsr;
KEGG: mmr:Mmar10_3056 DNA mismatch endonuclease vsr"
/codon_start=1
/transl_table=11
/product="T/G mismatch-specific endonuclease"
/protein_id="YP_910576.1"
/db_xref="GI:119355932"
/db_xref="InterPro:IPR004603"
/db_xref="GeneID:4570649"
/translation="MADVVSPETRSRMMSGIRSENTVPEMRVRRGLHARGFRFRLHCG
GLPGKPDIVFPKYRAVIFIHGCFWHAHECPLFKWPKTREDFWKKKIGKNRIRDLAVMD
ELARQGWRVLIVWECALKGKGRRPIDEVVDSCAEWLLSSSTKREIRGQHEIIDITIDH
EKQGLPDDLREGTRRK"
misc_feature complement(97239..97580)
/locus_tag="Cpha266_0082"
/note="Very Short Patch Repair (Vsr) Endonuclease.
Endonucleases in DNA repair that recognize damaged DNA and
cleave the phosphodiester backbone. Vsr endonucleases have
a common endonuclease topology that has been tailored for
recognition of TG mismatches; Region: Vsr; cd00221"
/db_xref="CDD:29956"
misc_feature complement(order(97248..97250,97299..97301,97308..97310,
97317..97319,97401..97403,97452..97454,97527..97532,
97557..97568))
/locus_tag="Cpha266_0082"
/note="additional DNA contacts [nucleotide binding]; other
site"
/db_xref="CDD:29956"
misc_feature complement(order(97317..97319,97545..97547,97554..97556))
/locus_tag="Cpha266_0082"
/note="mismatch recognition site; other site"
/db_xref="CDD:29956"
misc_feature complement(order(97305..97307,97389..97391,97443..97445,
97521..97523))
/locus_tag="Cpha266_0082"
/note="active site"
/db_xref="CDD:29956"
misc_feature complement(order(97245..97247,97398..97400))
/locus_tag="Cpha266_0082"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29956"
misc_feature complement(97392..97397)
/locus_tag="Cpha266_0082"
/note="DNA intercalation site [nucleotide binding]; other
site"
/db_xref="CDD:29956"
gene complement(97588..98865)
/locus_tag="Cpha266_0083"
/db_xref="GeneID:4570650"
CDS complement(97588..98865)
/locus_tag="Cpha266_0083"
/EC_number="2.1.1.37"
/note="KEGG: lpf:lpl0145 DNA
(cytosine-5-)-methyltransferase;
TIGRFAM: DNA-cytosine methyltransferase;
PFAM: C-5 cytosine-specific DNA methylase"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_910577.1"
/db_xref="GI:119355933"
/db_xref="InterPro:IPR001525"
/db_xref="GeneID:4570650"
/translation="MNTTQSFSVLRQQAGLSIDKIAHITGYSQREVYRWEKNEVVPRK
MVLDQLTRIAQPLSTYGKDSSSFTFIDLFAGIGGMRKAFEELGGRCVFTSEWDKYSRQ
TYCANFDCDHEIGGDITKIDARDIPSHDILVAGFPCQPFSIAGVSKKNALGKPHGFAD
KTQGTLFFDVARVIEYHQPKAILLENVKNLQRHDKGKTFAVIKETLTELGYYFDWKII
DAGNWVPQHRERIFIAGFREDCGFSFDRFDLPHGNERPVIETILHPENGMEDEEPPYT
VGPLARISDRYTLSDHLWEYLQKYAEKHRAKGNGFGFGLVGPHDVARTLSARYYKDGS
EILVKQEGKNPRRLTPRECARLMGFDTPNGNSFVIPVSDTQAYRQFGNAVVVPVVMSV
ARYMLEYLMDGVSSDQLRFDFGILMADNAVQYG"
misc_feature complement(98695..98838)
/locus_tag="Cpha266_0083"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(98758..98760,98833..98835))
/locus_tag="Cpha266_0083"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(98755..98757,98830..98832))
/locus_tag="Cpha266_0083"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(98752..98757,98767..98769,98776..98778,
98809..98814))
/locus_tag="Cpha266_0083"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature complement(97672..98667)
/locus_tag="Cpha266_0083"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:73191"
misc_feature complement(97717..98661)
/locus_tag="Cpha266_0083"
/note="DNA-methyltransferase (dcm); Region: dcm;
TIGR00675"
/db_xref="CDD:161991"
misc_feature complement(order(98455..98457,98461..98463,98509..98520,
98575..98586,98632..98649))
/locus_tag="Cpha266_0083"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature complement(order(97720..97722,97885..97890,97894..97899,
97978..97980,97984..97986,98176..98178,98182..98184,
98302..98307,98311..98313,98377..98379,98398..98400,
98431..98442,98449..98454,98461..98463))
/locus_tag="Cpha266_0083"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature complement(order(97720..97722,98176..98178,98182..98184,
98305..98307,98311..98313,98440..98442,98452..98454,
98461..98463))
/locus_tag="Cpha266_0083"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene complement(99268..100713)
/locus_tag="Cpha266_0084"
/db_xref="GeneID:4570651"
CDS complement(99268..100713)
/locus_tag="Cpha266_0084"
/note="KEGG: lpn:lpg2913 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910578.1"
/db_xref="GI:119355934"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:4570651"
/translation="MIINSSELTGVLRQYNPWWSGNRFPDLPAWKRAAFHEIAHWVEN
PPAGRALLLSGARQVGKTTLFLQAIDELLAKGIPPGNILYATFDHPLLKLAGLDGLLR
LWDEAEPSKQGTEYLFLDEIQSIKEWQVWLKHQVDFEKRRRIAVTGSATPLAMEGQES
GVGRWHTIKLATLSFYEYLKLRNDPVPKLPAISSLADLFDMTPAWFSKTGSEARILTG
FFHEYLLRGGFPQTATVSSIPLAQKLLREDIVDKILKRDMTALFGVRRIIELEQTFLY
LCLHDGGMLDMQELSKNLEVKRPTAMSFISILEATHLIYRLQPFGYGKEILRGKHKIY
LADPAIAPGVLLKGISLLDNPTLLGQAAETAFFKHVFSRYYARSIAFSYWRGGKKGLE
VDIIADIGGRYVPFEVKYRSTAVETADLKGLTEFCRTRAVNKSCVITRNMEDFGIIPL
TGDNNIQALKIPAPLVCYWLGESETTSAVGS"
misc_feature complement(99367..100665)
/locus_tag="Cpha266_0084"
/note="Predicted ATPase (AAA+ superfamily) [General
function prediction only]; Region: COG1373"
/db_xref="CDD:31564"
misc_feature complement(100177..100572)
/locus_tag="Cpha266_0084"
/note="AAA domain; Region: AAA_14; pfam13173"
/db_xref="CDD:205354"
misc_feature complement(<99430..>99558)
/locus_tag="Cpha266_0084"
/note="Superfamily of nucleases including Short Patch
Repair (Vsr) Endonucleases, archaeal Holliday junction
resolvases, MutH methy-directed DNA mismatch-repair
endonucleases, and catalytic domains of many restriction
endonucleases, such as EcoRI, BamHI, and...; Region:
Restriction_endonuclease_like; cl00277"
/db_xref="CDD:212600"
misc_feature complement(order(99487..99489,99493..99495,99532..99534))
/locus_tag="Cpha266_0084"
/note="putative active site [active]"
/db_xref="CDD:29959"
gene complement(100871..101596)
/locus_tag="Cpha266_0085"
/db_xref="GeneID:4570652"
CDS complement(100871..101596)
/locus_tag="Cpha266_0085"
/note="PFAM: 4'-phosphopantetheinyl transferase;
KEGG: cte:CT2196 EntD/Gsp/HetI/Sfp family protein"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_910579.1"
/db_xref="GI:119355935"
/db_xref="InterPro:IPR008278"
/db_xref="GeneID:4570652"
/translation="MIIAKETVTLIHTDTKIHGLPETELYESLSDDEKTRAGRIHAAS
ERQNFIVRRGILRSLLGTTFGIEPFRIRFAATPVGKPFVAFPGNSGIFFNLSHSGNDI
VYAFSGHPETGIDIERIRTLEDIDELARNYFSAEEYAILMNQPGWKKNNAFIRIWSLK
EALIKASGWPLEQGLAAFDVAAYCQMNRFELPFGDIHTFTCIAPVFDYICGFATALAI
RLDRNEPLNIKRYSLQGGQFFEL"
misc_feature complement(<101048..101527)
/locus_tag="Cpha266_0085"
/note="Phosphopantetheinyl transferase [Coenzyme
metabolism]; Region: Sfp; COG2091"
/db_xref="CDD:32274"
misc_feature complement(<101093..101260)
/locus_tag="Cpha266_0085"
/note="4'-phosphopantetheinyl transferase superfamily;
Region: ACPS; pfam01648"
/db_xref="CDD:201902"
gene complement(102059..102997)
/locus_tag="Cpha266_0086"
/db_xref="GeneID:4570653"
CDS complement(102059..102997)
/locus_tag="Cpha266_0086"
/note="KEGG: cte:CT1464 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910580.1"
/db_xref="GI:119355936"
/db_xref="GeneID:4570653"
/translation="MKRITIPALLAIMLLLCQSLSFAAVSQFTGTWKNTDPNTAGVTK
LSITGNGNSLRMRAWGKCHPQDCDWGEVNAYAYAPGVSSDIDQNAQAVSALFTTGFSQ
TLVIVRPISRSSIRADIYTRFTDNSGRSNYTASYTFNRQLIVGPIGPIGPIGPIRPMP
SVEEDCISFNPSTVTVKNLDGRWTIVDGNHLMFNFGPNRTEALQALRIIKHYRMNSSC
FVGRPDPSFQYLLVNGRAPQGNMPGEDCVSFNPNTIEVRNIGGSWKIVDGSHWVFDFG
SKEDEARKAFAIIKKYGFTRSCFVGRPDPSFQYLKK"
sig_peptide complement(102926..102997)
/locus_tag="Cpha266_0086"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.987 at
residue 24"
gene 103347..104657
/locus_tag="Cpha266_0087"
/db_xref="GeneID:4570654"
CDS 103347..104657
/locus_tag="Cpha266_0087"
/note="PFAM: protein of unknown function DUF894, DitE;
major facilitator superfamily MFS_1;
KEGG: cte:CT0102 transporter, putative"
/codon_start=1
/transl_table=11
/product="major facilitator transporter"
/protein_id="YP_910581.1"
/db_xref="GI:119355937"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR010290"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4570654"
/translation="MSNADESINGNDNSPAEQSPTTLKEKVLSAFPAFRSRNFRLYFI
GQIVSMVGTWLQMVAQGWLVLEMTGSAFWVGVAAAASSLPTLFLSLIGGVIVDRYNRK
TILLWTQSASMVLALVLGIITLTGSVTLAVILALAFLLGCVAAVATPAIQAFLSEMVD
RDQLHSAVALNAAIFNASRVIGPAIAGLMIAWIGTGGAFIANGLSYFAVIAALLAITI
ATPRKIPAVHQPPLQSIRDGIVYTWEHPVIRTIVMFVSVVSIFGWSFMSMLPVVAKQT
YGLGSDGMGYLFSAFGLGSLSGTVVVSMSSGKIRSSAMVIGGILVFSLALTAFTFASD
ERVAMAFLFIAGIGMLSAFATMTATVQRLVEDSYRGRVMSIYLMVLMGFMPLGNLQVG
FLSEQFGTAIAIRIGSIVVLLATIFLFSYRKEIQSAWHEYRMQE"
misc_feature 103461..104603
/locus_tag="Cpha266_0087"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 103461..104543
/locus_tag="Cpha266_0087"
/note="H+ Antiporter protein; Region: 2A0121; TIGR00900"
/db_xref="CDD:162098"
misc_feature order(103503..103505,103512..103520,103524..103529,
103578..103580,103587..103592,103599..103601,
103611..103616,103620..103625,103776..103781,
103788..103793,103800..103805,103812..103814,
103848..103853,103860..103865,103881..103883,
104121..104123,104130..104135,104142..104147,
104154..104156,104196..104198,104208..104210,
104220..104222,104229..104231,104241..104243,
104382..104384,104391..104396,104403..104405,
104415..104420,104427..104429,104460..104465,
104472..104477,104484..104489,104496..104498)
/locus_tag="Cpha266_0087"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(104732..105310)
/locus_tag="Cpha266_0088"
/db_xref="GeneID:4570655"
CDS complement(104732..105310)
/locus_tag="Cpha266_0088"
/note="KEGG: eli:ELI_01410 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910582.1"
/db_xref="GI:119355938"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4570655"
/translation="MQFGKTFQIPALIAVSCALVAPAPAMAEHGRNTRTVAAAVAAAA
IVGLAINAANHQGHYKDGRRYDNDRDSGEFDRGYRDGLYDTNRNNYNHTDAYRDGYRA
GQDERELRVSHNQSNRWEQGRHVADSNMMYKATDEAERYWNLPRGSATPVRSSYNEDS
GNYRVAVAAGYLRGVCVLDRYGRVIRFEDKRD"
sig_peptide complement(105227..105310)
/locus_tag="Cpha266_0088"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.999 at
residue 28"
gene complement(105373..105780)
/locus_tag="Cpha266_0089"
/db_xref="GeneID:4570656"
CDS complement(105373..105780)
/locus_tag="Cpha266_0089"
/note="KEGG: rsp:RSP_2032 putative hypothetical Gifsy-1
prophage protein"
/codon_start=1
/transl_table=11
/product="Gifsy-1 prophage protein"
/protein_id="YP_910583.1"
/db_xref="GI:119355939"
/db_xref="GeneID:4570656"
/translation="MKTKSLVFLLLFTLFSIRAYAADDRYEQVKFPRGASGTSIKSSI
VGYQGVNYTLDAKAGQTMTVKLQSSNLSNYFNIYAPGKGPGDEAMVIGDINGNSYSGV
LPSTGTYTIQVFLMRNAARRNEKASYTLDISVK"
sig_peptide complement(105715..105780)
/locus_tag="Cpha266_0089"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.999 at
residue 22"
gene 106136..106678
/locus_tag="Cpha266_0090"
/db_xref="GeneID:4570657"
CDS 106136..106678
/locus_tag="Cpha266_0090"
/EC_number="1.8.4.11"
/note="KEGG: cte:CT0103 PilB-related protein;
TIGRFAM: methionine-R-sulfoxide reductase;
PFAM: Methionine sulfoxide reductase B"
/codon_start=1
/transl_table=11
/product="methionine-R-sulfoxide reductase"
/protein_id="YP_910584.1"
/db_xref="GI:119355940"
/db_xref="InterPro:IPR000437"
/db_xref="InterPro:IPR002579"
/db_xref="GeneID:4570657"
/translation="MHRMLMFIFFATVGLFACSGEPTSPKFSPSKAMSDSRALNPYYS
RTDTTKLDLPDSVWKKVLPPEVYEVARKAGTERAFTGKLWDFEGIGTYYCAACGNALF
RSDAKFASTCGWPSFFETVRPGSVEYRTDMAFGMARTEVLCGRCGAHLGHVFDDGPPP
TGKRFCMNSIVLDFEPDEGD"
sig_peptide 106136..106195
/locus_tag="Cpha266_0090"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.982) with cleavage site probability 0.716 at
residue 20"
misc_feature 106283..106672
/locus_tag="Cpha266_0090"
/note="methionine sulfoxide reductase B; Provisional;
Region: PRK00222; cl15841"
/db_xref="CDD:210241"
misc_feature 106298..106666
/locus_tag="Cpha266_0090"
/note="SelR domain; Region: SelR; pfam01641"
/db_xref="CDD:201899"
gene complement(106689..107087)
/locus_tag="Cpha266_0091"
/db_xref="GeneID:4570658"
CDS complement(106689..107087)
/locus_tag="Cpha266_0091"
/note="PFAM: PilT protein domain protein;
KEGG: eba:ebB17 hypothetical protein"
/codon_start=1
/transl_table=11
/product="PilT domain-containing protein"
/protein_id="YP_910585.1"
/db_xref="GI:119355941"
/db_xref="InterPro:IPR002716"
/db_xref="InterPro:IPR006162"
/db_xref="GeneID:4570658"
/translation="MRYLLDTNICIYIINSRPADVLKRFRQEQIGTIGISSITAAELT
FGVIKSGSEKNRRALEMFFTPLEILPFDGSIIWHYGRLRYYLEKLGQPIGALDTMIAS
HALALDTVLVTNNVREFMRVPGLRYENWAE"
misc_feature complement(106701..107078)
/locus_tag="Cpha266_0091"
/note="PIN domain of ribonucleases (toxins), VapC and
FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus
horikoshii protein PH0500, and other similar bacterial and
archaeal homologs; Region: PIN_VapC-FitB; cd09881"
/db_xref="CDD:189051"
misc_feature complement(order(106731..106733,106788..106793,
106797..106802,106806..106808,106827..106829,
106836..106841,106848..106853,106857..106859,
106872..106880,106884..106886,106908..106910,
106917..106919,106950..106958,106962..106970,
106974..106979,106989..106991,107010..107012,
107019..107021,107043..107051,107055..107060,
107067..107075))
/locus_tag="Cpha266_0091"
/note="oligomeric interface; other site"
/db_xref="CDD:189051"
misc_feature complement(order(106743..106745,106797..106799,
106962..106964,107070..107072))
/locus_tag="Cpha266_0091"
/note="putative active site [active]"
/db_xref="CDD:189051"
misc_feature complement(order(106794..106796,106800..106805,
106836..106841,106845..106853,106857..106862,
106875..106877,106902..106904,106911..106916,
106953..106958,106962..106967,106974..106979))
/locus_tag="Cpha266_0091"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:189051"
gene complement(107084..107362)
/locus_tag="Cpha266_0092"
/db_xref="GeneID:4570659"
CDS complement(107084..107362)
/locus_tag="Cpha266_0092"
/note="KEGG: eba:ebD28 virulence associated protein B"
/codon_start=1
/transl_table=11
/product="virulence associated protein B"
/protein_id="YP_910586.1"
/db_xref="GI:119355942"
/db_xref="GeneID:4570659"
/translation="MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVL
ISHFADGVLLLPIDKSWATLEAALEEFEPEFKLEREQPEAEKREAIAS"
misc_feature complement(107096..107311)
/locus_tag="Cpha266_0092"
/note="Antidote-toxin recognition MazE; Region:
Antitoxin-MazE; cl00877"
/db_xref="CDD:212245"
gene complement(107423..108994)
/locus_tag="Cpha266_0093"
/db_xref="GeneID:4570660"
CDS complement(107423..108994)
/locus_tag="Cpha266_0093"
/note="TIGRFAM: drug resistance transporter, EmrB/QacA
subfamily;
PFAM: major facilitator superfamily MFS_1;
KEGG: cch:Cag_0039 drug resistance transporter EmrB/QacA
subfamily"
/codon_start=1
/transl_table=11
/product="EmrB/QacA family drug resistance transporter"
/protein_id="YP_910587.1"
/db_xref="GI:119355943"
/db_xref="InterPro:IPR001411"
/db_xref="InterPro:IPR004638"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4570660"
/translation="MLPAAHAYETGSRRIIITLTVIVSAMLELIDTTIVNVAITEISG
NLGASIEDVAWVVTSYAIANVIVIPLSGFLGNLLGRRNYYIGSILLFTAASLLCGIAT
DIWTLVFFRFLQGIGGGALLPTSQAILYETYPPEDRGKATGIFSMGLVLGPTFGPLLG
GFLVDNFSWEWCFFVNIPVGLLAAWSAFTFIKEPKTVHKVVKIDWAGIGLLTIGIGSL
QFILERGESKDWFETPYITWFTIIAIVSLMLFVWWELRVEEPAVDLSVLARSHNLAIA
AVLTFVVGYGLYGSLFVFPVFVQRLLGFSALLTGTVLFPSALVTGIIALPLGIALQKG
ASAKILMTVGMAAFSIFCWELGQQTMQSGAGNFFWILLLRGVALGFIFIPVTMLAVAG
LHGKDIGQATGLNNMVRQLGGSFGIALTNTYIVKRVAEHRNEILSNLSPYDPAAVERL
NAIGQAAQSRMISPVEAEQVALRALEGTVTAQSYHLAYMDAFMLIALLFALCMPLLFF
IRIKKGEKADLSQAH"
misc_feature complement(107471..108952)
/locus_tag="Cpha266_0093"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature complement(<108419..108943)
/locus_tag="Cpha266_0093"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(108536..108538,108554..108559,
108566..108571,108605..108607,108614..108619,
108626..108631,108638..108643,108779..108784,
108788..108793,108803..108805,108812..108817,
108824..108826,108875..108880,108884..108892,
108899..108901))
/locus_tag="Cpha266_0093"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(107735..>108178)
/locus_tag="Cpha266_0093"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(109147..110133)
/locus_tag="Cpha266_0094"
/db_xref="GeneID:4570661"
CDS complement(109147..110133)
/locus_tag="Cpha266_0094"
/note="PFAM: secretion protein HlyD family protein;
KEGG: cte:CT0105 multidrug resistance protein A"
/codon_start=1
/transl_table=11
/product="secretion protein HlyD family protein"
/protein_id="YP_910588.1"
/db_xref="GI:119355944"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:4570661"
/translation="MAEQEKNIGTAEKPEEKATNPLRLVITVLLVLAAVVWGGSKIRH
SFLYVETDNAQIEGDVYPVISKVPGTVQSVLVRTNQEVRRGDTLVLLDPADYKVKRDM
AEAALQNARASVSAAGEAATAAAATGQKLKSDLARSQNLRRQDVISPSEFDAVKAAAL
SSSAQSAAAESQHRGAAAQVTMRQAELRNADLQLSYTTITAPAAGHVSKKNVQPGQYV
APGQQLIALVGSSELWVVANFKETQLENIRTGQPVTIRVDAYPGKEFEGRVESISSGT
GARFALLPPDNASGNFVKVAQRVPVKILFTGKPDKDHKLAAGMNVVVEIKVK"
misc_feature complement(109159..109992)
/locus_tag="Cpha266_0094"
/note="efflux pump membrane protein (multidrug resistance
protein A); Region: 8a0101; TIGR00998"
/db_xref="CDD:162152"
misc_feature complement(109810..109947)
/locus_tag="Cpha266_0094"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature complement(<109297..109542)
/locus_tag="Cpha266_0094"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(110135..110608)
/locus_tag="Cpha266_0095"
/db_xref="GeneID:4570662"
CDS complement(110135..110608)
/locus_tag="Cpha266_0095"
/note="PFAM: UspA domain protein;
KEGG: cte:CT0106 universal stress protein family"
/codon_start=1
/transl_table=11
/product="UspA domain-containing protein"
/protein_id="YP_910589.1"
/db_xref="GI:119355945"
/db_xref="InterPro:IPR006015"
/db_xref="InterPro:IPR006016"
/db_xref="GeneID:4570662"
/translation="MKTKPKKIICAVDFSPLSDNLVTYAAGLRPYDAELTLLYIEKEG
KRTLNMLQNRLHAFSRYSELLVQANRSARFAVECGDPAAEILAYADRVHADLLLLGSH
GSTAFTRLLMGSTAETVLRRAACPVAIYKVPDRRTPARKRQEATTLLLKDNKQTA"
misc_feature complement(110222..110590)
/locus_tag="Cpha266_0095"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(110261..110272,110300..110305,
110309..110314,110489..110491,110570..110578))
/locus_tag="Cpha266_0095"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene complement(110611..111936)
/locus_tag="Cpha266_0096"
/db_xref="GeneID:4570663"
CDS complement(110611..111936)
/locus_tag="Cpha266_0096"
/note="PFAM: outer membrane efflux protein;
KEGG: cch:Cag_0041 outer membrane protein, putative"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_910590.1"
/db_xref="GI:119355946"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:4570663"
/translation="MKKTLKIHACIATAALMLAIPHRTDAVMPPPGAPMTLEETIMLV
KENNPALKAAAEEVNAADARIRQQKSAYYPQISASAGYRYIDPVSEMGFGGSEPLQFM
PNNNYEAKISAKATLLDFGRRGVEIDLAESGKNSAVHTLTLTRRDLSFSTVELFYGIL
FLRESIRVEEKEITALQKAFDYTSKRYQAGTATRFDVLTTDVRIQAARSKKLNLEHQV
RRNELALYRLTGIATDRPLELKGSFSVHPARPLESTLVAEAMKQRPEVQLAGENEQSA
KLRRSLAVKAGLPVVSATASWGAANGYQPDIDEIRENIAAGIHIELPIFTGFRTTAER
QEASARLRAATLRKLDTEEQVKTDVEETLHALETARKNILTTQSQVQLANLAAEHARA
RYQNGIATTLDLLDTESSLAQAELSRLQAAYDYVMNSYTLKRATGETFW"
sig_peptide complement(111856..111936)
/locus_tag="Cpha266_0096"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.997 at
residue 27"
misc_feature complement(110623..111840)
/locus_tag="Cpha266_0096"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:162556"
gene 112186..114285
/locus_tag="Cpha266_0097"
/db_xref="GeneID:4570664"
CDS 112186..114285
/locus_tag="Cpha266_0097"
/note="PFAM: sigma-54 factor, interaction
domain-containing protein; helix-turn-helix, Fis-type; GAF
domain protein; ATPase associated with various cellular
activities, AAA_5;
SMART: AAA ATPase;
KEGG: plt:Plut_0058 transcriptional regulator, fis family"
/codon_start=1
/transl_table=11
/product="Fis family transcriptional regulator"
/protein_id="YP_910591.1"
/db_xref="GI:119355947"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4570664"
/translation="MQNIAVHEASTLMRYISNAIGSIRDPQELFRTVTDKLRLVFEFD
SAFIITLDRDRRFINVVFEMVRFDLPDTIQRKKRPVAGSWIESHLGDEGVSVVAIEGE
MDRYPADFPVPRMLYDLGMRQVVLSPLRSGGKVIGFLNFVSREQKQWKESDKELLSTL
SSPVAVALSSALAYEELRQREAQTAMQLAVNNALLTIKDRSRMLLAVCEQIDKLVPCT
FLGIRVMDRDGNFRIFDNFMRETPSGFFPVSAHEKLDVPDFAEMARESFSLITSPGCF
SGEAFQLLCDKYRLVGLVREKFNICSLISVRLWDLPGSCAGLIISDTSRAFDEHDQET
VGLIVPQLSLALQNYLAFEEIDKLRRKLEGEKAYLFEEIKATHDFEEIKGESAVLASV
LHRVSQVAPTDATVLIQGETGTGKELFARALHNLSRRRNRMLVKVNCAALPATLIESE
LFGHEKGSFTGAIERRIGKFELAEGGTVFLDEVGELPLELQAKLLRVLQERELERLGG
RGVISVDVRVLAATNRNLEKEVAEGRFREDLFFRLNVFPLFVPPLRERREDIPLLALY
FAAKFARLMGKPHCEFRESDMLLLKAREWKGNIRELAHLVEQAVIVSDGRWLDFSTML
SPSLAFTEPREQGQLKSMREFEEQVAMMERELILEVLSQSNGRVSGEGGAAEKLGMHP
KTLYSRIEKLEIRKRYR"
misc_feature 112255..112650
/locus_tag="Cpha266_0097"
/note="GAF domain; Region: GAF_2; pfam13185"
/db_xref="CDD:205366"
misc_feature 112258..112650
/locus_tag="Cpha266_0097"
/note="GAF domain; Region: GAF; pfam01590"
/db_xref="CDD:201875"
misc_feature 113335..114225
/locus_tag="Cpha266_0097"
/note="psp operon transcriptional activator PspF; Region:
phageshock_pspF; TIGR02974"
/db_xref="CDD:163093"
misc_feature 113353..113817
/locus_tag="Cpha266_0097"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 113413..113436
/locus_tag="Cpha266_0097"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(113416..113439,113626..113628,113752..113754)
/locus_tag="Cpha266_0097"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 113614..113631
/locus_tag="Cpha266_0097"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 113809..113811
/locus_tag="Cpha266_0097"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 114130..114261
/locus_tag="Cpha266_0097"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(114296..115678)
/locus_tag="Cpha266_0098"
/db_xref="GeneID:4570665"
CDS complement(114296..115678)
/locus_tag="Cpha266_0098"
/note="PFAM: CBS domain containing protein; protein of
unknown function DUF21; transporter-associated region;
KEGG: plt:Plut_2077 CBS domain protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910592.1"
/db_xref="GI:119355948"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR002550"
/db_xref="InterPro:IPR005170"
/db_xref="GeneID:4570665"
/translation="MKRHTEHEFREPDNLSMEILFLLFLIIINGIFAMSEIALITTKR
TRLTKLAESGDKSAAAALKLGHEPTTFLSTIQIGITSIGILNGIVGQGALAEPFAVWL
ESLGMAHDASHIGATAVVVISITYITIVVGELVPKRLGQFNPEGAARLFARPMLMLAT
IARPFVRLLSVSTDTLLRLMGKSPQAMPSVTEEEIHAMLEEGSEAGVIEQQEHDMVRN
VFRLDDRQLGSLMVPRADIVYLDITRPLEENILRVTESEHSRFPVCNGGMQSLLGVVN
AKQLLSQTLKGGLNDFTSQLQPYVYVPETLTGMELLDHFRTSGTQMVFVVDEYGEVQG
LVTLQDMLEAVTGEFVPRNLEDSWAVEREDGSWLLDGLIPVPELKDKLELLSVPEEDK
GLYHTLSGLLMWSLGRMPQTGDVATWENWRLEIVDLDGNRIDKVLASKIPPPDTNGLK
QNGSAAGEKN"
misc_feature complement(114350..115594)
/locus_tag="Cpha266_0098"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:31445"
misc_feature complement(115043..115594)
/locus_tag="Cpha266_0098"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:201879"
misc_feature complement(114647..114976)
/locus_tag="Cpha266_0098"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(114356..114601)
/locus_tag="Cpha266_0098"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(115662..115976)
/locus_tag="Cpha266_0099"
/db_xref="GeneID:4569453"
CDS complement(115662..115976)
/locus_tag="Cpha266_0099"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910593.1"
/db_xref="GI:119355949"
/db_xref="GeneID:4569453"
/translation="MPWYIAYRVRHKSMRFLRDSPMIFSCLNLFVRQYVIINEFLTAT
LTSFGSELLLSGIFDPDEQRRKEPWKGRKKKCGKNIPEKSYLYPETTGFPVRLLINET
PH"
misc_feature complement(<115827..>115946)
/locus_tag="Cpha266_0099"
/note="Conserved oligomeric complex COG6; Region: COG6;
pfam06419"
/db_xref="CDD:203440"
gene complement(116027..116800)
/locus_tag="Cpha266_0100"
/db_xref="GeneID:4569454"
CDS complement(116027..116800)
/locus_tag="Cpha266_0100"
/EC_number="1.3.5.1"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: plt:Plut_2080 succinate dehydrogenase"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase/fumarate reductase
iron-sulfur subunit"
/protein_id="YP_910594.1"
/db_xref="GI:119355950"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR006058"
/db_xref="GeneID:4569454"
/translation="MNFTLKIWRQSNTKAKGGLVTYNVADISAECSFFEMLDILNQQL
ITSGNDPVSFDHDCREGICGTCSLYINGRPHGPLKGITTCQLHMRSFSDGDTITIEPW
RAKAFPIVRDLIVDRSALDKIIQAGGYISVNTGGIPDANTLPVQKERSDASFDAAACI
GCGACVAACPNASAMLFAGAKVSHLSLLPQGKIEAARRVRNMVACMDELGFGNCSNSY
ACEAECPKGISVSVIARMNREFLGAKLFSEKDKAIRNAL"
misc_feature complement(116051..116800)
/locus_tag="Cpha266_0100"
/note="succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Validated; Region: PRK07570"
/db_xref="CDD:181038"
misc_feature complement(116438..116791)
/locus_tag="Cpha266_0100"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:205266"
gene complement(116807..118783)
/gene="sdhA"
/locus_tag="Cpha266_0101"
/db_xref="GeneID:4569455"
CDS complement(116807..118783)
/gene="sdhA"
/locus_tag="Cpha266_0101"
/EC_number="1.3.5.1"
/note="part of four member succinate dehydrogenase enzyme
complex that forms a trimeric complex (trimer of
tetramers); SdhA/B are the catalytic subcomplex and can
exhibit succinate dehydrogenase activity in the absence of
SdhC/D which are the membrane components and form
cytochrome b556; SdhC binds ubiquinone; oxidizes succinate
to fumarate while reducing ubiquinone to ubiquinol"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_910595.1"
/db_xref="GI:119355951"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR004112"
/db_xref="InterPro:IPR011280"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4569455"
/translation="MKALFNDKHDSLMIPLAAGIPEGPISEKWTSYKSGARLVNPNNK
RKLDIIVVGTGLAGASAAATLGQLGYRVKVFCYQDTPRRAHSIAAQGGINAAKNYQND
GDSVYRLFYDTIKGGDYRAREANVYRLAEVSREIIDLCVAQGVPFAREYGGLLANRSF
GGAQVSRTFYARGQTGQQLLLGAYGALSRQIAAGTVTLYNRRDVLDMVIEEGKARGII
ARNLVTGEIESHSAHAVVLASGGYGNVFYLSTNAMGSNVTPAWSAYKKGAFFANPAFT
QIHPTCIPVHGDFQSKLTLMSESLRNDGRIWVPTDKAIAEKLRKNEITPLDVAEKDRD
YYLERRYPAFGNLVPRDVASRAAKERCDAGNGVGITGMAVYLDFADAIKRKGHDTIDA
LYGNLFQMYEQISADDPYKTPMKIYPAVHYTMGGLWVDYNLMTTVPGLFSIGECNFSD
HGANRLGASALMQGLADGYFILPYTIGNYLASEIHTPRIETGCSAFELAAQSVNDRLS
RLMHTGGKQSVDYFHRKLGLIMWEYCGMARTREGLIKALDLINELKTAFALDVRIPGG
MQEYNPELEKACRVADFIELGELMVRDALQRNESCGGHFREEFQTPEGEALRNDEEFA
FVGAWMYNGPDTKPSLHRENLQFSEIKLSQRCYK"
misc_feature complement(116810..118750)
/gene="sdhA"
/locus_tag="Cpha266_0101"
/note="succinate dehydrogenase flavoprotein subunit;
Reviewed; Region: sdhA; PRK07573"
/db_xref="CDD:181040"
misc_feature complement(117389..118519)
/gene="sdhA"
/locus_tag="Cpha266_0101"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(116813..117217)
/gene="sdhA"
/locus_tag="Cpha266_0101"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene complement(118798..119526)
/locus_tag="Cpha266_0102"
/db_xref="GeneID:4569456"
CDS complement(118798..119526)
/locus_tag="Cpha266_0102"
/EC_number="1.3.5.1"
/note="TIGRFAM: succinate dehydrogenase (or fumarate
reductase) cytochrome b subunit, b558 family;
KEGG: cte:CT2268 succinate dehydrogenase, cytochrome
subunit, putative"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase subunit C"
/protein_id="YP_910596.1"
/db_xref="GI:119355952"
/db_xref="InterPro:IPR011138"
/db_xref="GeneID:4569456"
/translation="MVLPSPAGKTFLCSFSSEKTIVMNKSALLSSITKKVVMALAGLF
LATFLFVHLFINLMLLLDDGGQAFTTAASFMGTNPVIRIFEQVLFAGFLLHIVFGILV
SIQNRQSRPVSYSYSNRSDTSFLSKYMFHSGIVVLIFLLLHFFDFYFIKVGLVAPPPG
VEAHDFYHRSILLFSNNLYASFYLISFLFLGFHLNHATQSAFQSMGWNHSRYTGALKV
IGTIYAVVISGGFMAIPIFFLLFR"
misc_feature complement(118804..119439)
/locus_tag="Cpha266_0102"
/note="succinate dehydrogenase (or fumarate reductase)
cytochrome b subunit, b558 family; Region: sdhC_b558_fam;
TIGR02046"
/db_xref="CDD:131101"
misc_feature complement(118801..119427)
/locus_tag="Cpha266_0102"
/note="Succinate:quinone oxidoreductase (SQR)-like Type B
subfamily 2, transmembrane subunit; composed of proteins
with similarity to the SQRs of Geobacter metallireducens
and Corynebacterium glutamicum. SQR catalyzes the
oxidation of succinate to fumarate...; Region:
SQR_TypeB_2_TM; cd03498"
/db_xref="CDD:48059"
misc_feature complement(order(118888..118890,118912..118917,
118927..118929,119149..119151,119170..119175,
119182..119184,119221..119223,119422..119424))
/locus_tag="Cpha266_0102"
/note="putative Iron-sulfur protein interface [polypeptide
binding]; other site"
/db_xref="CDD:48059"
misc_feature complement(order(118915..118917,118924..118926,
118936..118938,118948..118950,119128..119130,
119149..119151,119230..119232,119239..119244,
119392..119394,119401..119403,119410..119415))
/locus_tag="Cpha266_0102"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:48059"
misc_feature complement(order(118822..118824,118834..118836,
118978..118980,119008..119010,119017..119019,
119086..119088,119098..119100,119371..119373,
119383..119385))
/locus_tag="Cpha266_0102"
/note="distal heme binding site [chemical binding]; other
site"
/db_xref="CDD:48059"
misc_feature complement(order(118981..118983,118993..118998,
119080..119082,119092..119094,119101..119106,
119113..119118,119173..119175,119185..119187,
119197..119199,119224..119229))
/locus_tag="Cpha266_0102"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48059"
gene complement(119559..120194)
/locus_tag="Cpha266_0103"
/db_xref="GeneID:4569457"
CDS complement(119559..120194)
/locus_tag="Cpha266_0103"
/note="PFAM: cyclase family protein;
KEGG: cch:Cag_1936 hypothetical protein"
/codon_start=1
/transl_table=11
/product="cyclase family protein"
/protein_id="YP_910597.1"
/db_xref="GI:119355953"
/db_xref="InterPro:IPR007325"
/db_xref="GeneID:4569457"
/translation="MNIIDLTHSLEPGMPVYPGTPPPLFQELFSFADQGFRERQITLT
THTGTHLDVPSHILERGDDLDSFSVQHFAGPAAVISLNCSPTTRLAIGDLEAHLPSLR
GCDFLLLSSGWSRYWGSEKYFTGYPVLSMEAASALAGLGLKGIGVDMISVDDPDAHDL
PVHRIFLEKRIILVENLANLEQLPPVGFDFFCMPLKLSHSEASPVRAIAII"
misc_feature complement(119562..120194)
/locus_tag="Cpha266_0103"
/note="Kynurenine formamidase [Amino acid transport and
metabolism]; Region: COG1878"
/db_xref="CDD:32062"
gene 120331..120849
/locus_tag="Cpha266_0104"
/db_xref="GeneID:4569458"
CDS 120331..120849
/locus_tag="Cpha266_0104"
/note="KEGG: cte:CT0059 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910598.1"
/db_xref="GI:119355954"
/db_xref="GeneID:4569458"
/translation="MQYFMNLRSAGRLLTVVGFLLPLLSCGKSPEEKLMEKVIEHSTG
QKVDIDADGNKLTIESDGQKMEFQQQQKGVWPADIPSDVPEFSRGKIVAVTRASIPEN
ESWSVVYEDVKTSDIKEYEPRLKERGFTTSATFFSSDEGEHGTVSGQKGKLNVAVMAG
SGKASLSVVSEK"
gene 120911..121306
/locus_tag="Cpha266_0105"
/db_xref="GeneID:4569459"
CDS 120911..121306
/locus_tag="Cpha266_0105"
/note="PFAM: histidine triad (HIT) protein;
KEGG: plt:Plut_2076 Hit family protein"
/codon_start=1
/transl_table=11
/product="histidine triad (HIT) protein"
/protein_id="YP_910599.1"
/db_xref="GI:119355955"
/db_xref="InterPro:IPR001310"
/db_xref="GeneID:4569459"
/translation="MIAMHNSFYNPDCLFCRIAAGEIPADIVYRDEHVLAFRDINPAA
PEHLLIIPLKHIASLNELQSEDKEIAGHLLLAAGEVARRAGLYDSGYRMVFNTGADAL
QSVFHIHGHLIGGCRMGWPPFPGEVVGHG"
misc_feature 120944..121255
/locus_tag="Cpha266_0105"
/note="Protein Kinase C Interacting protein related
(PKCI): PKCI and related proteins belong to the ubiquitous
HIT family of hydrolases that act on alpha-phosphates of
ribonucleotides. The members of this subgroup have a
conserved HxHxHxx motif (x is a...; Region: PKCI_related;
cd01276"
/db_xref="CDD:29589"
misc_feature order(121019..121021,121025..121030,121049..121051,
121055..121057,121196..121198,121217..121219,
121223..121225,121235..121237,121241..121243)
/locus_tag="Cpha266_0105"
/note="nucleotide binding site/active site [active]"
/db_xref="CDD:29589"
misc_feature order(121229..121231,121235..121237,121241..121249)
/locus_tag="Cpha266_0105"
/note="HIT family signature motif; other site"
/db_xref="CDD:29589"
misc_feature 121235..121237
/locus_tag="Cpha266_0105"
/note="catalytic residue [active]"
/db_xref="CDD:29589"
gene 121365..124133
/locus_tag="Cpha266_0106"
/db_xref="GeneID:4569460"
CDS 121365..124133
/locus_tag="Cpha266_0106"
/EC_number="4.2.1.3"
/note="TIGRFAM: aconitate hydratase 1;
PFAM: aconitate hydratase domain protein;
KEGG: dge:Dgeo_1682 aconitate hydratase 1"
/codon_start=1
/transl_table=11
/product="aconitase"
/protein_id="YP_910600.1"
/db_xref="GI:119355956"
/db_xref="InterPro:IPR000573"
/db_xref="InterPro:IPR001030"
/db_xref="InterPro:IPR006249"
/db_xref="GeneID:4569460"
/translation="MRSQKDPSGVTRSLQTGDGTVLYCSLSALETSGFGAVSRLPKSM
KVLLESALRNVDDETVRQSDVMLLAEGACAGVKAVEVPFKPARVLLQDFTGVPALVDL
ASLREACLLSGGDPERINPVVPCDLVIDHSLQVDAYGTSDALKINLDLEFDRNRERYA
FLKWAERAFRNFRVVPPGTGIVHQVNLEYLSRVVCVENGIAFPDSLVGTDSHTTMING
LGVTGWGVGGIEAEAVMLGQPVYLLRPSVTGVRVHGELVAGVTATDLVLTMTERLRRV
GVVNDFVEFFGPGLDLLSLPDRATIANMAPEYGATMGFFPVDAVTLDYLHMTGRGSCC
DLVERYSKEQGLWRDPASDPLFTRVVDFDLGTVVPSVAGPGRPQDRIALSMVKESWLR
GFAELYGRQPKVRFPGARVMDNEEGKFFLPDAKPEGDGAGEGRHGFSLDDGAVVIAAI
TSCTNTSNPSVMIAAGLLAKAAVSRGLAVKPWVKTSMAPGSRVVSDYLEQSGLAVPLD
ALGFNIIGYGCTTCIGNSGPLPENVARAIDAKGVVAAAVLSGNRNFEGRIQSQVRANY
LMSPPLVVAYAIAGTMAIDLLTEPMGTDHDGIPVYLRDLWPTQGEVNSVRERSVRQKM
YADNYNDVFKGTTQWAEIPASEECLYRWDERSTYICRPPFLDRVAEVPPIPAPVLGAR
CLVLFGDSITTDHISPAGSIGASRPAGLYLQSLGVPPGEFNSFGSRRGNHEVMTRGTF
DNIRIRNRLAPGMEAGMTTWFSSDGSRREAMPIFDAAMRYLAENVPLVVIAGRDYGMG
SSRDWAAKGTLLLGVRAVVARSFERIHRANLVRMGVLPLEFADAGSPESIGLKGDEFF
EIPLGGTITPRERITVTATDPLSLEKKQFSVISRIDTPVEADYFRNGGILPAVLRKIL
KDEHKTEG"
misc_feature 121371..124112
/locus_tag="Cpha266_0106"
/note="aconitate hydratase; Validated; Region: PRK09277"
/db_xref="CDD:181750"
misc_feature 121623..>122513
/locus_tag="Cpha266_0106"
/note="Aconitase catalytic domain; Aconitase catalyzes the
reversible isomerization of citrate and isocitrate as part
of the TCA cycle; Region: Aconitase; cl00285"
/db_xref="CDD:199278"
misc_feature order(121635..121637,121644..121646,121992..121997)
/locus_tag="Cpha266_0106"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153129"
misc_feature <122688..123110
/locus_tag="Cpha266_0106"
/note="Aconitase catalytic domain; Aconitase catalyzes the
reversible isomerization of citrate and isocitrate as part
of the TCA cycle; Region: Aconitase; cl00285"
/db_xref="CDD:199278"
misc_feature order(122721..122723,122919..122921,122928..122933,
123015..123017)
/locus_tag="Cpha266_0106"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153129"
misc_feature 123420..123938
/locus_tag="Cpha266_0106"
/note="Aconitase A swivel domain. This is the major form
of the TCA cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group...; Region: AcnA_IRP_Swivel;
cd01580"
/db_xref="CDD:29529"
misc_feature 123759..123767
/locus_tag="Cpha266_0106"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29529"
gene 124222..124515
/locus_tag="Cpha266_0107"
/db_xref="GeneID:4569461"
CDS 124222..124515
/locus_tag="Cpha266_0107"
/note="PFAM: FeoA family protein;
KEGG: plt:Plut_2075 ferrous iron transport protein A"
/codon_start=1
/transl_table=11
/product="FeoA family protein"
/protein_id="YP_910601.1"
/db_xref="GI:119355957"
/db_xref="InterPro:IPR007167"
/db_xref="GeneID:4569461"
/translation="MNLSELQVGDKAEVTAVKAESAVRRRILDMGLIKGTCFKVLRVA
PLGDPMEIYFKGMYLSLRKKEAEGILVIKTGEHGDGVPMSRNRKTCCSAGDGG"
misc_feature 124222..124434
/locus_tag="Cpha266_0107"
/note="FeoA domain; Region: FeoA; pfam04023"
/db_xref="CDD:202856"
gene 124512..126650
/locus_tag="Cpha266_0108"
/db_xref="GeneID:4569462"
CDS 124512..126650
/locus_tag="Cpha266_0108"
/note="TIGRFAM: ferrous iron transport protein B; small
GTP-binding protein;
PFAM: GTP-binding protein, HSR1-related; Ferrous iron
transport protein B domain protein; Ferrous iron transport
B domain protein; nucleoside recognition domain protein;
KEGG: cch:Cag_1929 ferrous iron transport protein B"
/codon_start=1
/transl_table=11
/product="ferrous iron transport protein B"
/protein_id="YP_910602.1"
/db_xref="GI:119355958"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR003373"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006073"
/db_xref="InterPro:IPR011619"
/db_xref="InterPro:IPR011640"
/db_xref="InterPro:IPR011642"
/db_xref="GeneID:4569462"
/translation="MIEKKGISVALAGNPNCGKSSLFNVLTGARQKVGNFSGVTIEKH
EGFLDFKGYSLKVVDLPGIYSLTPYSPEEIVTRRYLIDEKPDVVVNVIEGPNLERNLL
LTTQMMEMEVDFVVALNMIDEVEEKGISIDVKQLQKLLGCHIIPTSAKKKTGIDSLLD
HVVRAYRKDIDLKKNKLSFRPEVEESVHAIAALLMHQPELERFNPRWLAIKLLENDRE
VYHQVQQLPVWIKVELLLQDAIRIAARLFDSDPEVLITEDRHAFIRGAMKECVRQRSP
ERATMTDVIDSVVLNRVLGLPIFLFVVWAMFQLTFTLGSPLMDGLEYLFGLLGSSIEP
YLGNKILKSIIIDGIIAGVGGVLVFLPNIVLLFIALSFLEASGYMARAAFVIDKVMHR
IGLHGKSFIPMITGFGCSIPAIMATRTLKSPTDRLTTILVIPFMSCGAKLPVYVLLAG
AFFPPDVAANVLFGIYMLGIGVGLWTAWLLKSTVLKSDSEPFVMELPPYRWPALHAVF
FQAKVKAMMYLKKAGTLILGAVMLIWGVSNYPRNPVLDQWLASETSRIGALHMTPVEK
TSAIDAVRQQVQADQLEYSVAGRAGKMIEPLIKPLGFDWRIGIALVTGLVAKEVVVST
MGTIYALGQTDESSAELKSILKNDPGFSQATALSLMVFVLLYIPCVAAVGVMKKEIGR
WKPVLLYSVYVLAVSWILSFVTYRLALILL"
misc_feature 124524..126647
/locus_tag="Cpha266_0108"
/note="Fe2+ transport system protein B [Inorganic ion
transport and metabolism]; Region: FeoB; COG0370"
/db_xref="CDD:30719"
misc_feature 124539..125015
/locus_tag="Cpha266_0108"
/note="Ferrous iron transport protein B (FeoB) family;
Region: FeoB; cd01879"
/db_xref="CDD:206667"
misc_feature 124548..124571
/locus_tag="Cpha266_0108"
/note="G1 box; other site"
/db_xref="CDD:206667"
misc_feature order(124557..124559,124563..124574,124866..124871,
124875..124877,124953..124961)
/locus_tag="Cpha266_0108"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206667"
misc_feature 124626..124640
/locus_tag="Cpha266_0108"
/note="Switch I region; other site"
/db_xref="CDD:206667"
misc_feature 124629..124631
/locus_tag="Cpha266_0108"
/note="G2 box; other site"
/db_xref="CDD:206667"
misc_feature 124686..124697
/locus_tag="Cpha266_0108"
/note="G3 box; other site"
/db_xref="CDD:206667"
misc_feature order(124695..124751,124761..124766)
/locus_tag="Cpha266_0108"
/note="Switch II region; other site"
/db_xref="CDD:206667"
misc_feature 124866..124877
/locus_tag="Cpha266_0108"
/note="G4 box; other site"
/db_xref="CDD:206667"
misc_feature 124953..124961
/locus_tag="Cpha266_0108"
/note="G5 box; other site"
/db_xref="CDD:206667"
misc_feature 125592..125867
/locus_tag="Cpha266_0108"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:203716"
misc_feature 125892..126053
/locus_tag="Cpha266_0108"
/note="Ferrous iron transport protein B C terminus;
Region: FeoB_C; pfam07664"
/db_xref="CDD:203715"
misc_feature 126258..126560
/locus_tag="Cpha266_0108"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:203716"
gene complement(126637..129036)
/locus_tag="Cpha266_0109"
/db_xref="GeneID:4569463"
CDS complement(126637..129036)
/locus_tag="Cpha266_0109"
/EC_number="5.99.1.2"
/note="KEGG: cte:CT0055 DNA topoisomerase I;
TIGRFAM: DNA topoisomerase I;
PFAM: TOPRIM domain protein; DNA topoisomerase, type IA,
central domain protein; DNA topoisomerase, type IA, zn
finger domain protein;
SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase
I, DNA-binding; Toprim sub domain protein"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="YP_910603.1"
/db_xref="GI:119355959"
/db_xref="InterPro:IPR000380"
/db_xref="InterPro:IPR003601"
/db_xref="InterPro:IPR003602"
/db_xref="InterPro:IPR005733"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR013497"
/db_xref="InterPro:IPR013498"
/db_xref="GeneID:4569463"
/translation="MALKSPAASARNRTLIVVESPSKAKTINKYLGDKYTVFASVGHI
KDLPKKEIGLDFDHHYEPRYEVIAGKEKVVRQLKKLADESNEILIATDPDREGEAIAW
HIANEVEFAHKPVFRVLFNEITKTAIIAAIQQPRQIDYRLVRSQQTRQGLDKIVGYKI
SPFLWNVVLRGLSAGRVQSVALRLICEREAEINGFQIQEYWSIAADFKTDLNETFRTK
LIKIKGDKPELSNQKKAETAAAEISERLFAVKEITTRVQQRKPPFPFTTSLLQQAASN
QLGFGSQKTMRIAQQLYEGIELGDEGATGLITYMRTDSIRIGTEATAEARNYITAQFG
KEYVGYGGAAKAGKNAQDAHEAIRPTSLLRKPESVKHFLSSDQFRLYELIWRRLLTAM
MAPAKIEQTRVDVEDREKEFTFRANGSRVLFAGFMRVYDDQQELDYEAQSSTRDDVEK
EQTVQLPEKLKEQDKLGLAGLDSKQSFTRPPARYSEATLVKDLDNYGIGRPSTYASIF
STLQDRRYVELQKKKIIPTELGKDVSLILVANFPELFNVGFTAHMEDELDKVASGDDE
YEAVLEKFYRPLETALSLRKSDPIIPQNSATETCDKCGKGQMTVKWTASGKFLGCSRY
PSCKNIKPLSSSKAKPKDTGIQCPSCKEGHMLLRDGRLGPFLACSSYPKCNTLLNLGK
QRQVEPMKIPPLLTTLVCPKCGAPMNLRSGKRGLWLGCSKFPKCRGRLAWGTLDEEVQ
RHWETLMTEHQKAHPTVALTMIDGRPVPLTLSVDDIITRAEEAGLIAAVPEEQQELTA
E"
misc_feature complement(126961..129006)
/locus_tag="Cpha266_0109"
/note="DNA topoisomerase I; Validated; Region: PRK06599"
/db_xref="CDD:180637"
misc_feature complement(128632..129000)
/locus_tag="Cpha266_0109"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature complement(order(128749..128751,128755..128757,
128761..128763,128968..128970,128977..128982))
/locus_tag="Cpha266_0109"
/note="active site"
/db_xref="CDD:173783"
misc_feature complement(order(128719..128724,128728..128733,
128752..128754,128758..128760,128959..128961))
/locus_tag="Cpha266_0109"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature complement(order(128755..128757,128761..128763))
/locus_tag="Cpha266_0109"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature complement(128752..128754)
/locus_tag="Cpha266_0109"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature complement(127300..128619)
/locus_tag="Cpha266_0109"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:73184"
misc_feature complement(order(128461..128523,128536..128619))
/locus_tag="Cpha266_0109"
/note="domain I; other site"
/db_xref="CDD:73184"
misc_feature complement(order(127495..127500,127510..127512,
127516..127521,127528..127533,128104..128106,
128155..128157,128167..128169,128554..128556,
128566..128568,128578..128580,128587..128592))
/locus_tag="Cpha266_0109"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:73184"
misc_feature complement(order(127423..127425,128476..128478,
128488..128490))
/locus_tag="Cpha266_0109"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73184"
misc_feature complement(order(127600..127632,127747..127803,
127807..127809,127816..127857,128257..128298,
128422..128448))
/locus_tag="Cpha266_0109"
/note="domain II; other site"
/db_xref="CDD:73184"
misc_feature complement(order(127858..127920,127954..127980,
128038..128124,128152..128232,128236..128256))
/locus_tag="Cpha266_0109"
/note="domain III; other site"
/db_xref="CDD:73184"
misc_feature complement(order(127465..127467,127531..127533,
127537..127539,127879..127881,127891..127893,
127900..127902,127975..127977,128203..128211,
128221..128223))
/locus_tag="Cpha266_0109"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73184"
misc_feature complement(order(127975..127977,128104..128106,
128110..128112))
/locus_tag="Cpha266_0109"
/note="catalytic site [active]"
/db_xref="CDD:73184"
misc_feature complement(order(127300..127407,127423..127467,
127477..127599))
/locus_tag="Cpha266_0109"
/note="domain IV; other site"
/db_xref="CDD:73184"
misc_feature complement(127138..127245)
/locus_tag="Cpha266_0109"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature complement(126997..127107)
/locus_tag="Cpha266_0109"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature complement(<126856..126939)
/locus_tag="Cpha266_0109"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene 129197..130975
/locus_tag="Cpha266_0110"
/db_xref="GeneID:4569464"
CDS 129197..130975
/locus_tag="Cpha266_0110"
/EC_number="3.5.1.28"
/note="PFAM: cell wall hydrolase/autolysin;
KEGG: plt:Plut_2072 N-acetylmuramoyl-L-alanine amidase"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase"
/protein_id="YP_910604.1"
/db_xref="GI:119355960"
/db_xref="InterPro:IPR002508"
/db_xref="GeneID:4569464"
/translation="MVTGFVIRQYFLFIIMSSFGFRLFRLFFCQLCLVLALVSMALLD
AEGVVRPESATLSLQVSKGNGEGYRIKVFALRKAGNILIDVESFARALRLGFRQSNGF
LVIDEAETLSGSSCQLRDGNNFVSIVSKDPRQEPGTMQLQATPVQIASKLYLPVSQAC
RFFSLWLQREVRYDPATGLISAILWGERPAYSLKKFSSSIQDEPEPVGSNGKRAASSE
ALTVISGVSVENRENGALISFSAVGNSVRTLLMKPDKNGIAYLTFQNATGNVDEMTKS
FGVGIVQAVKAKRFQKGGFQVALSMDNRSYRINSMEVKRDDINNRYLVYVAGEPDTGG
GGMREKESQISRVIERDIEKWKFDTVVLDAGHGGKDPGAIGGHGTMEKDVVLNIVRDL
GSIIARQWPDIKVVYTRNSDVFIPLHERGKIANRSGGKLFVSIHCNANSKSHIRGQEV
YILGPHRTQKSLEVAMFENSVITREADYRERYKGFSTEYLIMSSMAQNAFAKQSTTLA
QDVLKRIERKGGTTSRGVHQAGFMVLWTPSMPSILIETGYLSNPEEERILRERKEQIR
IAEAVFQGLDRYRRNNETARLSAVER"
sig_peptide 129197..129334
/locus_tag="Cpha266_0110"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.604) with cleavage site probability 0.361 at
residue 46"
misc_feature 130271..130942
/locus_tag="Cpha266_0110"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:31201"
misc_feature 130271..130924
/locus_tag="Cpha266_0110"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(130292..130294,130337..130339,130502..130504,
130829..130831)
/locus_tag="Cpha266_0110"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(130292..130294,130337..130339,130502..130504)
/locus_tag="Cpha266_0110"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene 131086..132072
/locus_tag="Cpha266_0111"
/db_xref="GeneID:4569465"
CDS 131086..132072
/locus_tag="Cpha266_0111"
/EC_number="6.3.4.15"
/note="KEGG: cch:Cag_0077 biotin--acetyl-CoA-carboxylase
ligase;
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase;
PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix,
type 11 domain protein"
/codon_start=1
/transl_table=11
/product="biotin--acetyl-CoA-carboxylase ligase"
/protein_id="YP_910605.1"
/db_xref="GI:119355961"
/db_xref="InterPro:IPR004143"
/db_xref="InterPro:IPR004408"
/db_xref="InterPro:IPR013196"
/db_xref="GeneID:4569465"
/translation="MNQISSSILHHLRLSGGFLSGEDISVSLGITRSAVWKHIGALRR
EGYRIDAVSGQGYRLFSLSGRPVHEEVSPWLTTRFIGRDLHYHELLESTNFSARVLAG
TGTREGSVVVADAQSGGRGRMMRSWVSPGGVNLYFSLILRPRVPGIRVPQLTLLAAAA
VHQALCSCVPEIASRIKWPNDIMVGEKKLCGVLCEMQSEPDMTHFVIIGIGINVNIGE
FPDELRNIATSLFLESGRMVSRPELLASVLNHFESLYEAWLLHDDLGFVLPYLHEYSL
VYRRQVIIRQTTGDVCGTVSGIARGGELMLDLDDARTVLISSGDCLLCRQSP"
misc_feature 131131..132036
/locus_tag="Cpha266_0111"
/note="bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional; Region:
PRK11886"
/db_xref="CDD:183359"
misc_feature <131131..>131262
/locus_tag="Cpha266_0111"
/note="Biotin operon repressor [Transcription]; Region:
BirA; COG1654"
/db_xref="CDD:31840"
misc_feature 131401..131700
/locus_tag="Cpha266_0111"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; pfam03099"
/db_xref="CDD:202534"
gene 132085..133098
/locus_tag="Cpha266_0112"
/db_xref="GeneID:4569466"
CDS 132085..133098
/locus_tag="Cpha266_0112"
/EC_number="2.8.1.6"
/note="KEGG: plt:Plut_2070 biotin synthase;
PFAM: Radical SAM domain protein; biotin and thiamin
synthesis associated;
SMART: Elongator protein 3/MiaB/NifB"
/codon_start=1
/transl_table=11
/product="biotin synthase"
/protein_id="YP_910606.1"
/db_xref="GI:119355962"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR010722"
/db_xref="GeneID:4569466"
/translation="MTRMRPVPLHPDILQAYAVLETGEPVCRELAFALGELHGPDVLD
LASLAHKVKLRHGGSSGSIHACSIMNARSGVCSENCRFCAQSAHHQAAIDVYGLVDVD
AVLFHARQTASEGISHFGIVTSGFGYKTLSKEFRQILAMIDRLHQELPDLEICASLGV
LGEEPALELARHGIAQYNINIQVAPRRYGELIADTHSVDDRIDTIKRLRRNNIDVCCG
GIIGVGEQMKERVEMIFAFADLDVSVIPLNILVPIDGTPLEGSPGIPLDDIVKTFALC
RLVHPRKIIKIAAGRETVMKDFQGLLMLSGADGLLTGGYLTTRGRATADDRMFMRQLQ
WFN"
misc_feature 132190..133092
/locus_tag="Cpha266_0112"
/note="biotin synthase; Region: bioB; TIGR00433"
/db_xref="CDD:200012"
misc_feature 132310..132861
/locus_tag="Cpha266_0112"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(132310..132312,132316..132318,132322..132324,
132328..132336,132448..132450,132463..132468,
132553..132555,132622..132624,132742..132744,
132829..132834)
/locus_tag="Cpha266_0112"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 132820..>132999
/locus_tag="Cpha266_0112"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; pfam06968"
/db_xref="CDD:148534"
gene 133086..134270
/locus_tag="Cpha266_0113"
/db_xref="GeneID:4569467"
CDS 133086..134270
/locus_tag="Cpha266_0113"
/EC_number="2.3.1.47"
/note="PFAM: aminotransferase, class I and II;
aminotransferase class-III;
KEGG: cch:Cag_0079 8-amino-7-oxononanoate synthase"
/codon_start=1
/transl_table=11
/product="8-amino-7-oxononanoate synthase"
/protein_id="YP_910607.1"
/db_xref="GI:119355963"
/db_xref="InterPro:IPR001917"
/db_xref="InterPro:IPR004839"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:4569467"
/translation="MVQLSGSMMPIRESIERELLALRQKGRYRELPSVTQRSGNRIRI
GGKLLLNLSSNDYLGLGDRREMLDRYLVTLREAGYAMTSSSSRLLTGNHPLYGELEQT
LADLYGREAALVFNSGYHANTGILPALSTRHDLILCDRLNHASIIDGLMIAAAPYIRY
RHGDYQHLEELLSDAAGRYRQLFIISESVFSMDGDLADLERLVALKKRYGAFLIIDEA
HGVGVFGQKGLGLCEVAGMVEGIDMIVGTFGKAFASVGAYAVMDTLFREYLINTMRPL
IFTTALPPAILGWSLAVVRQQAVMSDERNRLQALAARLRNALRERGLAVAGESQIVPV
VAGGDRQAVLLAEKLAAAGILALPVRPPTVPENSARLRLSLRADLQWEDIESVPELLQ
GL"
misc_feature 133110..134267
/locus_tag="Cpha266_0113"
/note="7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism]; Region: BioF; COG0156"
/db_xref="CDD:30505"
misc_feature 133110..134267
/locus_tag="Cpha266_0113"
/note="8-amino-7-oxononanoate synthase; Reviewed; Region:
PRK05958"
/db_xref="CDD:180327"
misc_feature order(133437..133442,133449..133451,133644..133646,
133731..133733,133740..133742,133824..133826,
133833..133835)
/locus_tag="Cpha266_0113"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 133833..133835
/locus_tag="Cpha266_0113"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 134275..134961
/locus_tag="Cpha266_0114"
/db_xref="GeneID:4569468"
CDS 134275..134961
/locus_tag="Cpha266_0114"
/note="PFAM: protein of unknown function DUF452;
KEGG: plt:Plut_2068 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910608.1"
/db_xref="GI:119355964"
/db_xref="InterPro:IPR007398"
/db_xref="GeneID:4569468"
/translation="MKTAWISRTGELELLLFFAGWGMDSALAEHLWAHDDKEGFGMDI
LAFHDYGSLEISPGIREHFESYSKITLIAWSLGVWAAAHAALPRVDRAVALNGTLRPL
SERYGISPEVFFATHAGWSEQNRTRFYRRMCGSGEALDHFLSMAPLRSPADQKEELGF
LGESLIASENSPLPWGYDQIIIGDRDMVFPFQRQVIAWDGFGVSLVEGMPHFPFFHLK
SFREVLLCCK"
misc_feature 134275..134943
/locus_tag="Cpha266_0114"
/note="Protein of unknown function (DUF452); Region:
DUF452; cl01062"
/db_xref="CDD:120353"
misc_feature 134314..>134586
/locus_tag="Cpha266_0114"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
gene 134949..135731
/locus_tag="Cpha266_0115"
/db_xref="GeneID:4569469"
CDS 134949..135731
/locus_tag="Cpha266_0115"
/note="TIGRFAM: biotin biosynthesis protein BioC;
PFAM: Methyltransferase type 11; Methyltransferase type
12;
KEGG: plt:Plut_2067 biotin biosynthesis protein BioC"
/codon_start=1
/transl_table=11
/product="biotin biosynthesis protein BioC"
/protein_id="YP_910609.1"
/db_xref="GI:119355965"
/db_xref="InterPro:IPR011814"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4569469"
/translation="MLQVIDKGLVRERFSRTLHSYGSNAPVQNAMAVELARLICREEP
TCRFERVLEVGAGTGALTAELLKRCRISLYVANDLVGESLRYISREIEPWQPEAFRFL
EGDVETLTELPDRLDLVLSNAALQWLSDLEGFFRRVSALLKPGGLFAFTTFSARNMEE
LSSIQKVGLAYPTALDIERFASGSFTPLLIREDRKRLEFASPEEVLRHLSRTGVNGIS
RHAWTKSSYERFLHRYRQEFSSGGKVYLTYNPLYCCFRKRLS"
misc_feature 135096..135521
/locus_tag="Cpha266_0115"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 135096..135407
/locus_tag="Cpha266_0115"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(135108..135128,135180..135185,135258..135266,
135312..135314)
/locus_tag="Cpha266_0115"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 135728..136402
/gene="bioD"
/locus_tag="Cpha266_0116"
/db_xref="GeneID:4569470"
CDS 135728..136402
/gene="bioD"
/locus_tag="Cpha266_0116"
/EC_number="6.3.3.3"
/note="DTB synthetase; dethiobiotin synthase; involved in
production of dethiobiotin from ATP and
7,8-diaminononanoate and carbon dioxide; contains
magnesium"
/codon_start=1
/transl_table=11
/product="dithiobiotin synthetase"
/protein_id="YP_910610.1"
/db_xref="GI:119355966"
/db_xref="InterPro:IPR004472"
/db_xref="InterPro:IPR005829"
/db_xref="GeneID:4569470"
/translation="MKGSVTAISGIGTGVGKTVVTGLLAQGLQKCDRKVVTQKIVQTG
CTGISSDILEHRRLMGSSLIDVDYEGVTCPYSFGYPASPHLAARLEGAAVEVMTLRRA
TFTLQKQFDHVLLEGVGGLLVPLAPDLLFADYIRDAGYPLILVTATGLGSINHTLLSL
EACIARRITLKAVICNRFGEIDTLIGDDTVEMTRHYLKKYGLRAPLFTLVGDTLDCGC
IESLFL"
misc_feature 135794..136393
/gene="bioD"
/locus_tag="Cpha266_0116"
/note="dithiobiotin synthetase; Reviewed; Region: bioD;
PRK00090"
/db_xref="CDD:178855"
gene 136426..137730
/locus_tag="Cpha266_0117"
/db_xref="GeneID:4569471"
CDS 136426..137730
/locus_tag="Cpha266_0117"
/EC_number="2.6.1.-"
/note="TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate
aminotransferase;
PFAM: aminotransferase class-III;
KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate
aminotransferase"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_910611.1"
/db_xref="GI:119355967"
/db_xref="InterPro:IPR005814"
/db_xref="InterPro:IPR005815"
/db_xref="GeneID:4569471"
/translation="MTLPLPVIDLAFDRSHIWHPYTSLADPLPVYPVTGARGVYLELA
DGRRLVDGMSSWWAAIHGYNHPVLNQAVTTQLERMSHVMFGGLTHEPAITLAEQLAEL
TPEPLQKVFFSDSGSVSVEVAIKMAIQYWATLGETRKTRLLTVRSGYHGDTFAAMSVS
DPVTGMHRLFSGVLQRQIFAESPSCAFHDPWNEECIGDLRRKLERHADEIAAVIIEPV
VQGAGGMRFYAPRYLGRLRELCDEFGVLLIFDEIATGFGRSGKLFALEHAEVSPDILC
VGKALTGGYMTLAATLTTGVVAETISSGNPGLFMHGPTFMANPLACAVAAANIRLLLS
YDWKSKVAGIERGLESALSPCRTMEGVVDVRVLGAIGVVELENPVEMGLIQKKFVDRG
VWVRPFGRLVYLMPPYIITDEELGLLADAVTEVVYETLAESR"
misc_feature 136447..137703
/locus_tag="Cpha266_0117"
/note="adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated; Region: PRK07986"
/db_xref="CDD:181189"
misc_feature 136453..137703
/locus_tag="Cpha266_0117"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(136768..136776,136870..136875,136879..136881,
137071..137073,137173..137175,137179..137184,
137260..137262)
/locus_tag="Cpha266_0117"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(136771..136776,136870..136875,137071..137073,
137173..137175,137182..137184,137260..137262)
/locus_tag="Cpha266_0117"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 137260..137262
/locus_tag="Cpha266_0117"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(138482..138694)
/locus_tag="Cpha266_0118"
/db_xref="GeneID:4569024"
CDS complement(138482..138694)
/locus_tag="Cpha266_0118"
/note="PFAM: protein of unknown function DUF1458;
KEGG: cte:CT2229 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910612.1"
/db_xref="GI:119355968"
/db_xref="InterPro:IPR009923"
/db_xref="GeneID:4569024"
/translation="MSSHIYKKIELVGSSPTSIEEAVNNAIEKASESIRNIRWVEILE
TRCHVENQKLMYWQVTVKIGFTLDDN"
misc_feature complement(138488..138685)
/locus_tag="Cpha266_0118"
/note="Dodecin; Region: Dodecin; pfam07311"
/db_xref="CDD:203610"
gene 139074..140627
/locus_tag="Cpha266_0119"
/db_xref="GeneID:4569025"
CDS 139074..140627
/locus_tag="Cpha266_0119"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; Polysulphide reductase, NrfD;
KEGG: cch:Cag_1965 Fe-S-cluster-containing hydrogenase
components 1-like"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_910613.1"
/db_xref="GI:119355969"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR005614"
/db_xref="GeneID:4569025"
/translation="MNYGFVIDARKCIGCHACTVACKSENQVPLGVNRTWVKYVEKGS
FPETRRYFTVLRCNHCAEPPCVAICPVEALQKREDGIVDFDGRRCIGCKACAQACPYN
ALYIDPETHTSAKCNYCAHRKEVGLQPACVAICPQQAIVSGDLDDPSSKIAALVAGEQ
TVVRKPEKGTSPKLFYINGDGASLDPLQVSLEKEYHWSAQARGVGHFADKQKGAPAIE
KPHHEAPATGPAMRRVYDIPSKGAVWGWEVPAYVSAKAVSSGVFLLFFALTALLGQEL
SGMMQWAAWATSLVFLGLTGGFLIKDLDRPDRFSSVMLRPQFGSWLVKGGLTITGYGA
FLALWGASRFLQIPALERVALWGGALFALITAIYTAFLFGSAKGRDFWQSPMLLLHML
LNALLAGGSTMLLLGFGTGASVELFALLKQLLAAGFSLHLVIMLLELYGKHPSLQAER
TAEIIRSGSLKNEFWIGSFIAGNLLPLILSILSSDPLMLAAAAILGLCGVFYTEKVWV
QAPQRVPLS"
misc_feature 139074..139610
/locus_tag="Cpha266_0119"
/note="Fe-S-cluster-containing hydrogenase components 1
[Energy production and conversion]; Region: HybA; COG0437"
/db_xref="CDD:30786"
misc_feature 139080..139139
/locus_tag="Cpha266_0119"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
misc_feature 139314..139388
/locus_tag="Cpha266_0119"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
misc_feature 139794..140576
/locus_tag="Cpha266_0119"
/note="Polysulphide reductase, NrfD; Region: NrfD;
cl01295"
/db_xref="CDD:212608"
gene 140647..143508
/locus_tag="Cpha266_0120"
/db_xref="GeneID:4569026"
CDS 140647..143508
/locus_tag="Cpha266_0120"
/EC_number="1.2.1.2"
/note="PFAM: molybdopterin oxidoreductase; molydopterin
dinucleotide-binding region; molybdopterin oxidoreductase
Fe4S4 region;
KEGG: plt:Plut_0027 molybdenum enzyme related to
thiosulfate reductase and polysulfide reductase, large
subunit"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase"
/protein_id="YP_910614.1"
/db_xref="GI:119355970"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR006657"
/db_xref="InterPro:IPR006963"
/db_xref="GeneID:4569026"
/translation="MSYTHKPTVIESIAEKLHLIPDLHKENVRDGARRAAEEGSEISC
PPPSQWDNWVEYDSKSWPERKATEYMLVPTACFNCEAGCGLLAYVDKENMKIRKLVGN
PYHPASRGRNCAKGPATLNQIEDSDRVLYPMKRTGKRGEGKWARVTWDSVLDDIAGRM
RKAILEGRNNEISYHVGRPGHDGFMEWILRAWNVDGHNSHTNVCSSGARFGYAIWEGF
DRPSPDHANAKFILLVSAHLESGHYFNPHSQRIIEARMKGAKLAVLDPRLSNTASMSD
YWMPSYPGSEPAILLAMAKIIIDEGIYNRDYLENWVNWQAYLQTEYPGTPVTFENFID
ALKKEYSEYTPEYASKESGVDAAAIVEVARKIGEAGTQFSTHVWRSASSGNLGGWAVS
RTLHFLNVLTGSVGTPGGTSPSAWNKFKPTVHAEPKPQTYWNTLQLPDEYPLAHFEMS
FLLPHFLKEGRGKLDVYFTRVFNPVWTYPDGFSWIEALEDESKIGLHAALTPTWSETA
YFADYVLPMGHSAERHDLLSYETHAGKWIAYRQPVLRTALKRMGKPVKYTWEANPGEV
WEEDEFWIELTWRIDPDGTMGIRQYCMSPYRPGEKITIEEYYRYVFEHTHGLPEKAAE
EGLTAYDYMQKYGAFEVESNVYSLNEKPVAPADLQGSEVHQQSGLITKNGKAVGVEVN
GRSCTGFPTPSRKQEFFSQTMVDWKWPEYRVPGYIKSHIHQEIMNRSKGEFVLVPTFR
LPVLIHSRSGNAKWLAEIAHRNPVWINAADGAALHIENGDLIRVNTDIGFFVNRAWVT
EGIRPGVVACSHHIGRWRRDQDPEANRWATNRVQISKEGKGKWKMRVEESIQPYESND
PDSSRIFWSDGGVHQNITFPVHPDPISGMHCWHQKVRIEKAQDGDCYGDVFVDTERSF
AIYKEWLAMTRPAPGPGGLRRPLWLNRPFRPDEKTYYLQ"
misc_feature 140857..142596
/locus_tag="Cpha266_0120"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:209095"
misc_feature 140860..143139
/locus_tag="Cpha266_0120"
/note="Anaerobic dehydrogenases, typically
selenocysteine-containing [Energy production and
conversion]; Region: BisC; COG0243"
/db_xref="CDD:30592"
misc_feature order(140989..140991,141247..141249,141253..141261,
141346..141351,141361..141366,141436..141444,
141502..141504,141778..141780,142057..142065,
142144..142152,142159..142161,142195..142200,
142213..142215)
/locus_tag="Cpha266_0120"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:73198"
misc_feature 142843..143334
/locus_tag="Cpha266_0120"
/note="This CD contains the molybdopterin_binding
C-terminal (MopB_CT) region of tetrathionate reductase,
subunit A, (TtrA); respiratory arsenate As(V) reductase,
catalytic subunit (ArrA); and other related proteins;
Region: MopB_CT_Tetrathionate_Arsenate-R; cd02780"
/db_xref="CDD:30312"
misc_feature order(142843..142854,142858..142866,142870..142872,
143074..143076,143251..143253,143314..143319)
/locus_tag="Cpha266_0120"
/note="putative molybdopterin cofactor binding site; other
site"
/db_xref="CDD:30312"
gene 143666..144622
/locus_tag="Cpha266_0121"
/db_xref="GeneID:4569027"
CDS 143666..144622
/locus_tag="Cpha266_0121"
/note="PFAM: protein of unknown function DUF81;
KEGG: cte:CT0859 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910615.1"
/db_xref="GI:119355971"
/db_xref="InterPro:IPR002781"
/db_xref="GeneID:4569027"
/translation="MSSAAKKLLLKTAGTAGASILFFIIPGILYAFPADQTGQMAWWV
WVILLFAFSFILGIFSVLAGVGGGVLFVPIVSGFFPFHLDFIRGAGLVVALTGALSAG
APLMRKGLADLKLGLPMALVGSISSIAGALAGLAMPVAMVQLLLGLSIMFIAGIMIKS
GKSGYPEVKEPDTLSKILHISGIYHDEAMSKDIAWQIHRTPIGLFLFMIIGFIGGMFG
MGAGWANVPVFNLLMGVPLKVAVATSGLVLSINGAAAAWIYIFKGALLPLIAVPAVAG
IMLGSKIGAGLLTKVNTRSVRLIVISMLLLAGLRSLLKGFGI"
sig_peptide 143666..143761
/locus_tag="Cpha266_0121"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.998) with cleavage site probability 0.997 at
residue 32"
misc_feature 143897..144574
/locus_tag="Cpha266_0121"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene 144619..145047
/locus_tag="Cpha266_0122"
/db_xref="GeneID:4569028"
CDS 144619..145047
/locus_tag="Cpha266_0122"
/note="KEGG: cte:CT0860 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910616.1"
/db_xref="GI:119355972"
/db_xref="GeneID:4569028"
/translation="MKDTNREKPDEGDVQFVYAKVLDFVSHAGMVFIAAGYLIYVMQL
LPLSVSIRAVADNWHLSASDMQQKLHVPSGWSFMGSMADALHGDVVSYMSILFLCMAT
ILCLVFAVKVFFREKNYIYTAITFLQALVLLVAASGVISR"
gene 145415..145924
/locus_tag="Cpha266_0123"
/db_xref="GeneID:4569029"
CDS 145415..145924
/locus_tag="Cpha266_0123"
/note="KEGG: plt:Plut_0031 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910617.1"
/db_xref="GI:119355973"
/db_xref="GeneID:4569029"
/translation="MAETKKLAIIASQGTLDWAYPPFILASTAAAMDMEAVIFFTFYG
LPLLKKEIDAKVAPHTNPAMPMKMPFGSKEFQSYNWPIPNFISGNVPGFDSMATSLMK
ETFKKKGVATIEQLRGMCQEFGVRFIACQMTMEVFGFEKEEFIEGVEYGGAATFLEYA
ADANISLFI"
misc_feature 145421..145918
/locus_tag="Cpha266_0123"
/note="DsrE/DsrF/DrsH-like family; Region: DrsE_2;
pfam13686"
/db_xref="CDD:205862"
gene 146008..146487
/locus_tag="Cpha266_0124"
/db_xref="GeneID:4569030"
CDS 146008..146487
/locus_tag="Cpha266_0124"
/note="PFAM: Rhodanese domain protein;
KEGG: cte:CT0843 hypothetical protein"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_910618.1"
/db_xref="GI:119355974"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:4569030"
/translation="MRRFIELIRNCLTDVREIMPWELVDRMRLNPELMILDVREPAEF
DAMHISGSLCVPRGILESACEWDHDETVPELVKAREREIVVVCRSGHRSVLAAHSMQV
LGFEDVVSLRTGLRGWNDYEEPLRNSAGEVVDSEVADAFFTSKLREDQKRPAEKHQA"
misc_feature 146071..146364
/locus_tag="Cpha266_0124"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature 146266..146268
/locus_tag="Cpha266_0124"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene 146655..146891
/locus_tag="Cpha266_0125"
/db_xref="GeneID:4569031"
CDS 146655..146891
/locus_tag="Cpha266_0125"
/note="PFAM: SirA family protein;
KEGG: cte:CT0847 hypothetical protein"
/codon_start=1
/transl_table=11
/product="SirA family protein"
/protein_id="YP_910619.1"
/db_xref="GI:119355975"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:4569031"
/translation="MSDIASNMDLNCEGLNCPLPILKTKKAVDGLQSGEVLKMTATDP
GSINDMASWAKRTGNELVSHTEQAGVHTFYIRKK"
misc_feature 146682..146885
/locus_tag="Cpha266_0125"
/note="SirA, YedF, and YeeD. Two-layered alpha/beta
sandwich domain. SirA (also known as UvrY, and YhhP)
belongs to a family of bacterial two-component response
regulators that controls secondary metabolism and
virulence. The other member of this...; Region:
SirA_YedF_YeeD; cd00291"
/db_xref="CDD:48205"
misc_feature order(146682..146687,146694..146696,146703..146714,
146718..146720)
/locus_tag="Cpha266_0125"
/note="CPxP motif; other site"
/db_xref="CDD:48205"
gene 147068..148495
/locus_tag="Cpha266_0126"
/db_xref="GeneID:4569032"
CDS 147068..148495
/locus_tag="Cpha266_0126"
/EC_number="6.3.5.9"
/EC_number="6.3.5.-"
/note="TIGRFAM: cobyrinic acid a,c-diamide synthase;
PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ
domain protein glutamine amidotransferase;
KEGG: plt:Plut_0034 cobyrinic acid a,c-diamide synthase
CbiA"
/codon_start=1
/transl_table=11
/product="hydrogenobyrinic acid a,c-diamide synthase
(glutamine-hydrolysing) / cobyrinate a,c-diamide synthase"
/protein_id="YP_910620.1"
/db_xref="GI:119355976"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR004484"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:4569032"
/translation="MDAVTLPRLMISAAQKSSGKTTISLGLLSHLKSRGVAVRSFKKG
PDYIDPMWHKLASGSECYNLDPYLMGQEGCLDSFFKNSRNGNSDFCLIEGNHGLHDGL
SLDGSDSSAGLASMLKTPVLLVVDSRKTNRGVAALVMGMQAMQPQADIAGVILNQVQS
ARQAAKQKLAIEHYCKVPVFGAIPVDEELVIPERHLGLTTVGETADAAKFITGAAERL
ERYCDMAAIRALFSMASPIGMPPLETRGINPVARARVGVFRDAAFCFYYPDNLAALQE
HGAELIFIDSMSESSLPDIDGLYLGGGFPESFFDAISSRRGLLRDVRERVKSGMPLYA
ECGGLIYLSRSAEYGGKRYDLAGVLPLDIGFQQRPAGHGYLDLRSSAESAWFKTGERI
RAHEFHYSRPLLSSGACSYQFEVLRGYGVTGERDGAVDNHVFASFAHVHALSTPGWAP
KFVSLASIYKDRCLSGWAVPPQRQD"
misc_feature 147086..148435
/locus_tag="Cpha266_0126"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:179218"
misc_feature 147830..148426
/locus_tag="Cpha266_0126"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(148073..148075,148388..148390,148394..148396)
/locus_tag="Cpha266_0126"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene 149068..149403
/locus_tag="Cpha266_0127"
/db_xref="GeneID:4569033"
CDS 149068..149403
/locus_tag="Cpha266_0127"
/note="PFAM: DsrC family protein;
KEGG: cch:Cag_1957 sulfite reductase, dissimilatory-type,
gamma subunit"
/codon_start=1
/transl_table=11
/product="DsrC family protein"
/protein_id="YP_910621.1"
/db_xref="GI:119355977"
/db_xref="InterPro:IPR007453"
/db_xref="GeneID:4569033"
/translation="MAIVVNGVSCETDENGYLVNLEDWTEDVAKVLAEGEEIEMTEAH
WDLVKFLRGYYDEYQIAPAVKVLTKAIAAEKDMDKKNASEFLYGLFPKGPGLQACKIA
GLPKPTGCV"
misc_feature 149071..149400
/locus_tag="Cpha266_0127"
/note="DsrC like protein; Region: DsrC; pfam04358"
/db_xref="CDD:146805"
misc_feature 149074..149400
/locus_tag="Cpha266_0127"
/note="Dissimilatory sulfite reductase (desulfoviridin),
gamma subunit [Inorganic ion transport and metabolism];
Region: DsrC; COG2920"
/db_xref="CDD:32744"
gene 149458..150711
/locus_tag="Cpha266_0128"
/db_xref="GeneID:4569034"
CDS 149458..150711
/locus_tag="Cpha266_0128"
/EC_number="1.8.99.3"
/note="KEGG: plt:Plut_0036 sulfite reductase,
dissimilatory-type alpha subunit;
TIGRFAM: sulfite reductase, dissimilatory-type alpha
subunit;
PFAM: nitrite and sulphite reductase 4Fe-4S region"
/codon_start=1
/transl_table=11
/product="sulfite reductase, dissimilatory-type alpha
subunit"
/protein_id="YP_910622.1"
/db_xref="GI:119355978"
/db_xref="InterPro:IPR006067"
/db_xref="InterPro:IPR007087"
/db_xref="InterPro:IPR011806"
/db_xref="GeneID:4569034"
/translation="MDGAEGAASKEVHHCNECGAHSGEKFLNPTPMLDELEKGPWPSF
ISGFKELAERTKKPMLRGVMDQLEYSYNTKMGYWKGGLVTVDGYGAGIITRYSMIKDK
FPEASEFHTMRIQPAPGLHYNTAMLRELCDIWEKYGSGLIALHGQTGDIMLQGIEQDK
VQACFDELNQAGWDLGGAGAGMRTAVSCIGPGRCENACYDNLKLHLHALKHFVGVLHR
PEWNYKLKFKFSGCPNDCTNSIMRSDLAVIGTWRDAIQVDRDEVKAWIEKKGVDALVN
QVINHCPTKAISLKDGEMVIETRDCVRCMHCLNAMPKALSPGKDRGISLLMGGKNTLK
VGVNMGSLIIPFMKMESEEDIEAFIEQIEAIIDWWDDSGLDHERIGETIERVGLKQFI
EGIGLEADINMVSRPRDNPYFKARY"
misc_feature 149554..150693
/locus_tag="Cpha266_0128"
/note="sulfite reductase, dissimilatory-type alpha
subunit; Region: dsrA; TIGR02064"
/db_xref="CDD:211711"
misc_feature 149785..149970
/locus_tag="Cpha266_0128"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
gene 150794..151873
/locus_tag="Cpha266_0129"
/db_xref="GeneID:4569035"
CDS 150794..151873
/locus_tag="Cpha266_0129"
/EC_number="1.8.99.3"
/note="KEGG: plt:Plut_0037 sulfite reductase,
dissimilatory-type beta subunit;
TIGRFAM: sulfite reductase, dissimilatory-type beta
subunit;
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; nitrite/sulfite reductase, hemoprotein
beta-component, ferrodoxin domain protein; nitrite and
sulphite reductase 4Fe-4S region"
/codon_start=1
/transl_table=11
/product="sulfite reductase, dissimilatory-type beta
subunit"
/protein_id="YP_910623.1"
/db_xref="GI:119355979"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR005117"
/db_xref="InterPro:IPR006067"
/db_xref="InterPro:IPR011808"
/db_xref="GeneID:4569035"
/translation="MSSPEKKWKTVESGPHTYEEALHPVVRKNYGKWKYHEIPKPGVL
VHVAESGDSLYTVRAGTPRQDTVDMIRRLCDIADKYCDGYLRFTVRNNVEFLTPKQEN
VEPMIRELESMGLPVGGTGMCVSSVSHTQGWLHCDIPATDASGVVKSMMDTLYAEFRG
MQMPNKVRLSTSCCSINCGGQADIAVVVKHTRPPRVNHDHLAMICELPKAVARCPVAA
IRPTVVNGKRSLMVDEEKCICCGACFGACPAMEINHPEHSKFAIWVGGKNSNARSKPS
TMSIVAHNLPNNPPRWPEVTDAVGKILLAYKEGGRPWERIGEWINRIGWKRFFEETGL
TFDEDMIDSYRHARTTFNQSAHVRF"
misc_feature 150866..151870
/locus_tag="Cpha266_0129"
/note="sulfite reductase, dissimilatory-type beta subunit;
Region: dsrB; TIGR02066"
/db_xref="CDD:131121"
misc_feature 150929..151132
/locus_tag="Cpha266_0129"
/note="Nitrite/Sulfite reductase ferredoxin-like half
domain; Region: NIR_SIR_ferr; pfam03460"
/db_xref="CDD:202646"
gene 151889..153625
/locus_tag="Cpha266_0130"
/db_xref="GeneID:4569036"
CDS 151889..153625
/locus_tag="Cpha266_0130"
/note="unknown function"
/codon_start=1
/transl_table=11
/product="putative glutamate synthase (NADPH) small
subunit"
/protein_id="YP_910624.1"
/db_xref="GI:119355980"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4569036"
/translation="MKVESNPILDYALNYEFPEFTELQGTEKIVAFGDHSHKCPVYVR
QVPPCSAECPAGEDIRGYQRFLNGVEKSEDPWKSAWETIVDTNPFPAVMGRICPHPCQ
GGCNRQYHDESVAINAVEQVVGNYGIEHNLQLPGPGEDTGKRVAVIGGGPAGLSAAYQ
LRRKGHAVTIFDANEKLGGMVLYGIMGYRVDRAVLEAEIQRIISLGVETKMGVRIGTD
ITLDQLEKEYDAVFVGIGAQVGRSLPITGSADTKGVTNAIDFLKNYEVEGDSIAVGKK
VVVIGDGNVAMDVARLALRLGSEAVLISGVPREEMACFANEFDDAIREGSAIHYMTGT
VEVLKGEEGVRGLLCSKMVKKEKGEEGWNSPIPFLRYKSTDETFEIPCDMVVAAIGQT
TNMEGFESVAGDRPWLKVDRYFRLPGKENVFGGGDAIKVDLITTAVGHGRKAAMAIDA
FVKGDSFAEQGYREVAKVQKQDILYFYHSPQAKRETIELENVVGNHQELLEALSREEA
KAESERCMSCGLCFDCKQCVSFCPQEAVKRFRDNPPGEVVYTDYSKCVGCHICSLVCP
SGYIQMGMGEGL"
misc_feature 151889..153616
/locus_tag="Cpha266_0130"
/note="putative glutamate synthase (NADPH) small subunit;
Provisional; Region: PRK12771"
/db_xref="CDD:183735"
misc_feature 152327..>152461
/locus_tag="Cpha266_0130"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
misc_feature 152714..152941
/locus_tag="Cpha266_0130"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature 153524..153586
/locus_tag="Cpha266_0130"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
gene 153669..154037
/locus_tag="Cpha266_0131"
/db_xref="GeneID:4569037"
CDS 153669..154037
/locus_tag="Cpha266_0131"
/note="KEGG: cte:CT2246 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910625.1"
/db_xref="GI:119355981"
/db_xref="GeneID:4569037"
/translation="MSEDLIRRVEEAIACSRNWAEKGWPVTFGSRNVAVSSLKEAKAL
PSSFLYRQEALNYWNQARLMGNDAGDAGAKALDALKSGNMRAAHDALYLSQYIEKPLA
ENARTWHPLYEAFTAEISSC"
gene 154089..154448
/locus_tag="Cpha266_0132"
/db_xref="GeneID:4569038"
CDS 154089..154448
/locus_tag="Cpha266_0132"
/note="PFAM: DsrE family protein;
KEGG: cch:Cag_1952 DsrE protein"
/codon_start=1
/transl_table=11
/product="DsrE family protein"
/protein_id="YP_910626.1"
/db_xref="GI:119355982"
/db_xref="InterPro:IPR003787"
/db_xref="GeneID:4569038"
/translation="MKIGILLKEGPYNHQASDTAYKFAEAAIKKGHTIDAVFLYNDGV
GNVTKMMDPPQDDRNIAARWDALSKQHGVEILACIAASKRRGINDDVIIEGGTITGLG
TLTDIAIRNDRLITFGD"
misc_feature 154092..154439
/locus_tag="Cpha266_0132"
/note="DsrE/DsrF-like family; Region: DrsE; cl00672"
/db_xref="CDD:213099"
gene 154452..154841
/locus_tag="Cpha266_0133"
/db_xref="GeneID:4569039"
CDS 154452..154841
/locus_tag="Cpha266_0133"
/note="PFAM: DsrE family protein;
KEGG: cch:Cag_1951 DsrF protein"
/codon_start=1
/transl_table=11
/product="DsrE family protein"
/protein_id="YP_910627.1"
/db_xref="GI:119355983"
/db_xref="InterPro:IPR003787"
/db_xref="GeneID:4569039"
/translation="MGNMDIEENTDIKKIMHVMRHAPHGTIYSYEGLEMILIMAAYEQ
DLSVVFIGDGIYALKKNQDTHAIGIKGFSKTFMALDGYDVEKLYVDRVSLEERGLTED
DLVVPVEVLTSAEIGGLMREQDVIIHH"
misc_feature 154491..154838
/locus_tag="Cpha266_0133"
/note="sulfur relay protein TusC/DsrF; Region:
sulf_tusC_dsrF; TIGR03010"
/db_xref="CDD:200229"
gene 154917..155210
/locus_tag="Cpha266_0134"
/db_xref="GeneID:4569040"
CDS 154917..155210
/locus_tag="Cpha266_0134"
/note="PFAM: DsrH family protein;
KEGG: cte:CT0857 DsrH protein"
/codon_start=1
/transl_table=11
/product="DsrH family protein"
/protein_id="YP_910628.1"
/db_xref="GI:119355984"
/db_xref="InterPro:IPR007215"
/db_xref="GeneID:4569040"
/translation="MLHTINKSPFASDTFDTCGRFLLPGDPVLFIEDGVYAVQAGNRF
SSMIETIQKTNPVFALRPDLDARGIAAVDEGVTLVDYEGFVELVENHQVNSWL"
misc_feature 154935..155198
/locus_tag="Cpha266_0134"
/note="DsrH like protein; Region: DsrH; pfam04077"
/db_xref="CDD:202879"
gene 155257..155703
/locus_tag="Cpha266_0135"
/db_xref="GeneID:4569041"
CDS 155257..155703
/locus_tag="Cpha266_0135"
/note="KEGG: plt:Plut_0043 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910629.1"
/db_xref="GI:119355985"
/db_xref="GeneID:4569041"
/translation="MTKALDRVIQQNRKEILDRWHGQALALFSEKMARGTPIFDLLNE
SMGMILDGFEEGSESCLEGVDSFARIFAVHPFPPSGSMRLFFELQFILAAFCPDEESR
DAMQTRIQAIMLDACDDFMAHREKIYQLKVEERQRSMYMALRRAEG"
misc_feature 155266..155553
/locus_tag="Cpha266_0135"
/note="RsbT co-antagonist protein rsbRD N-terminal domain;
Region: RsbRD_N; pfam14361"
/db_xref="CDD:206529"
gene 155700..156695
/locus_tag="Cpha266_0136"
/db_xref="GeneID:4569042"
CDS 155700..156695
/locus_tag="Cpha266_0136"
/note="PFAM: Nitrate reductase, gamma subunit;
KEGG: plt:Plut_0044 DsrM protein"
/codon_start=1
/transl_table=11
/product="nitrate reductase, gamma subunit"
/protein_id="YP_910630.1"
/db_xref="GI:119355986"
/db_xref="InterPro:IPR003816"
/db_xref="GeneID:4569042"
/translation="MKKVLMPIVMVAVLGLIPFIGVTYAGLDYLFGVIIPYASVLIFI
AGFVYRLVDWLKRPVPFRITTTCGQEKSLDWIKQNKLDSPSRAWHAAFRVLFEVFFFR
SLFRNTRSELREGPSLVHGSSKWLWMGGLVFHWSLLVIGLRHARYFFVMVPDFIQLVE
GADRFFDLALPAFYLTDALVLSAVTFLFVRRMSDAKMRIISLQTDYFPLFLITGIVLV
GIIMRYIVKVDVMPVKDQMLRLVAFNFEAPAPIGALFYVHLFLVCVLAVYFPFSKLMH
MGAIFLSPTRNLCNNSREKRHVNPWNAAIKFRTYTEYEDEYREKMKKAKLPVEKQ"
sig_peptide 155700..155777
/locus_tag="Cpha266_0136"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.982) with cleavage site probability 0.973 at
residue 26"
misc_feature 156063..156536
/locus_tag="Cpha266_0136"
/note="Nitrate reductase gamma subunit; Region:
Nitrate_red_gam; cl00959"
/db_xref="CDD:163938"
gene 156698..158347
/locus_tag="Cpha266_0137"
/db_xref="GeneID:4569043"
CDS 156698..158347
/locus_tag="Cpha266_0137"
/note="KEGG: plt:Plut_0045 DsrK protein"
/codon_start=1
/transl_table=11
/product="DsrK protein"
/protein_id="YP_910631.1"
/db_xref="GI:119355987"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR006655"
/db_xref="GeneID:4569043"
/translation="MSKYLPKLSDLKKDFEEKPSILKGDYSKKEWWDTPFEFRDGNWS
FPAKPEVVEELGFPNSRKWSALDQDWKLPADWQKTISEGLKVRLKKFRSLKLYLDSCV
RCGACADKCHFFLGTGDPRNMPVLRAELLRSVYRNDFPLVEKILKGFSGSRKLTAEVI
KEWHMYYYQCTECRRCSVFCPLGIDTAEITMVARELLNLIGVNNNWILAPVANCNRTG
NHLGIEPHTFVQNIESLVEDIEDMTGVRVNPTFNRKGAEILFITPSGDVFGDPGVYTM
MGYLLLFHHIGLDYTISTYASEGGNFGMFTSNDMMKKLNAKMYHEAERLKVKWILGGE
CGHMWRVVHQYMNTMNGPADFLEVPVSPVTGTKFSNAAATKMVHIAEFTADLIYHKKL
KLDPRRNDHLKTTFHDSCNVARGMGMFEEPRFVLNNVCNSFHEMPENTIREQTFCCGS
GSGINSEENMEMRMRGGFPRANAVRHVRNQHQVDSLVTICAIDRASLPALMKYWNPGV
TVYGLHELVGNALVMQGEKKRKEDLREHPMKGFDDEEGDVD"
misc_feature 156971..158260
/locus_tag="Cpha266_0137"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:30596"
misc_feature 157910..158170
/locus_tag="Cpha266_0137"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 158337..158732
/locus_tag="Cpha266_0138"
/db_xref="GeneID:4568779"
CDS 158337..158732
/locus_tag="Cpha266_0138"
/note="KEGG: cte:CT2242 cytochrome DsrJ"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910632.1"
/db_xref="GI:119355988"
/db_xref="InterPro:IPR011031"
/db_xref="GeneID:4568779"
/translation="MSIKKNHIIFSLLALLLLAGSYAFMHVVQAADPVPPTPRPAASA
AIDSSKCIMPTAYMKANHMRVLHEWRNSSVRDGNRVHVAPNGSKFDKSLNTCLGCHAN
NRLFCFNCHMYANVKPKCWNCHISPMETP"
sig_peptide 158337..158429
/locus_tag="Cpha266_0138"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.999 at
residue 31"
gene 158732..159508
/locus_tag="Cpha266_0139"
/db_xref="GeneID:4568780"
CDS 158732..159508
/locus_tag="Cpha266_0139"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: cte:CT2241 polysulfide reductase, subunit B,
putative"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin iron-sulfur binding
domain-containing protein"
/protein_id="YP_910633.1"
/db_xref="GI:119355989"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4568780"
/translation="MNEQRRDFIRKTGLGVLAGLGVASGLFAESSFEKTVLPAWDEKP
VAGKIRWGMLVDTRTCNESCQECVLTCHHVHNVPDFGSRKDEVKWIWKSPYEKAFPTA
SQQFQNKETRDRSCLTLCNHCAESPCTKACPTEATFKRWDGIVAMDYHRCIGCRFCMA
ACPYGSRSFNWQDPRMAIKNPSADYPTRMQGVVEKCNFCSERLVKGLKPACVESCPNQ
ALTFGDLNDPESDIRKLLENNQTMQRKPELGTLPSVFYII"
sig_peptide 158732..158818
/locus_tag="Cpha266_0139"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.992) with cleavage site probability 0.960 at
residue 29"
misc_feature 158873..159505
/locus_tag="Cpha266_0139"
/note="Fe-S-cluster-containing hydrogenase components 1
[Energy production and conversion]; Region: HybA; COG0437"
/db_xref="CDD:30786"
misc_feature 159161..159226
/locus_tag="Cpha266_0139"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
gene 159518..160669
/locus_tag="Cpha266_0140"
/db_xref="GeneID:4568781"
CDS 159518..160669
/locus_tag="Cpha266_0140"
/note="PFAM: Polysulphide reductase, NrfD;
KEGG: cte:CT2240 polysulfide reductase, subunit C,
putative"
/codon_start=1
/transl_table=11
/product="polysulfide reductase, NrfD"
/protein_id="YP_910634.1"
/db_xref="GI:119355990"
/db_xref="InterPro:IPR005614"
/db_xref="GeneID:4568781"
/translation="MIEKALKGNRNYWLWIAFLCLVIGSGLFAYSQQRWFGLTVTGMG
RDVSWGLYIAQFTFLVGVAASAVMVVLPYYLHNQKAFAKTVIIGEFMAVSATMMCLLF
ILADMGRPDRVLNVLLYPSPHAMVFWDVLVLNGYLVINFVSAWTVLGAERKGVPPPAW
IKPVIYLSIPWAVSIHTVTAFLYAGLPGRHLWLTAVLAPRFLASAFAAGTALLILVTL
ILKKTTGFDAGKEAREKLAVLVIYAGLVNFFLIGTEFFTAFYSNVPAHMQSLQYLFFG
LEGKSQLVPWMWVSLLAGIGALAMLFSQKRKSSNLWLAAASGAMVLSIWIDKGVGLII
GGFVPSPLEEIVEYSPTVTEIVITLGIWAIGTLLLTVLLKVAVAVKTMD"
sig_peptide 159518..159607
/locus_tag="Cpha266_0140"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.984) with cleavage site probability 0.660 at
residue 30"
misc_feature 159632..>160297
/locus_tag="Cpha266_0140"
/note="Polysulphide reductase, NrfD; Region: NrfD;
cl01295"
/db_xref="CDD:212608"
gene 160906..161358
/locus_tag="Cpha266_0141"
/db_xref="GeneID:4568782"
CDS 160906..161358
/locus_tag="Cpha266_0141"
/note="KEGG: cte:CT2239 porphyrin biosynthesis protein,
putative"
/codon_start=1
/transl_table=11
/product="porphyrin biosynthesis protein"
/protein_id="YP_910635.1"
/db_xref="GI:119355991"
/db_xref="GeneID:4568782"
/translation="MKIMKVFLPVNIRIDDKKILFVGGGSIAMHKMQTVEQYARNITI
LAPRIDDKLKAKGFCEIRKEYEKTDLEGFFLVYACTNDLEVNRRIKKDAEELRVLVNV
ADNSELSDFISPAVFKLDEMTVAISSNGQNAKKSVEWRNRIKAMLQES"
misc_feature 160921..>161355
/locus_tag="Cpha266_0141"
/note="Siroheme synthase (precorrin-2
oxidase/ferrochelatase domain) [Coenzyme metabolism];
Region: CysG; COG1648"
/db_xref="CDD:31834"
misc_feature 160933..161250
/locus_tag="Cpha266_0141"
/note="Putative NAD(P)-binding; Region: NAD_binding_7;
pfam13241"
/db_xref="CDD:205421"
gene 161397..162785
/locus_tag="Cpha266_0142"
/db_xref="GeneID:4568783"
CDS 161397..162785
/locus_tag="Cpha266_0142"
/EC_number="2.1.1.107"
/note="TIGRFAM: uroporphyrin-III C-methyltransferase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: plt:Plut_0050 uroporphyrin-III
C-methyltransferase-like"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen-III C-methyltransferase"
/protein_id="YP_910636.1"
/db_xref="GI:119355992"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR003043"
/db_xref="InterPro:IPR006366"
/db_xref="GeneID:4568783"
/translation="MTKSDHSQRVDVSEKGYVYIIGAGPGDPELLTIKAERALQEADV
LLYDDLVSGELVDQFQGIKIYTGKRKDSHHFEQDEINSEIVRHALMGKKVARLKGGDP
FVFGRGGEEIEVLRKNGIRYEIIPGITAAYGASAYTEIPLTMRKISSSVAFCTGHPVN
KIQVPDADTLVYYMVASTVHDVLDAVVSKGRSENTKVAIVQNATRYNQKIFTGTLGEL
RRREKAVYSPALLIIGDNINQFIEKNWFSGKRKVLLTGGDAKRYNAMEHIMVHFPCRQ
VDGADRERVKEYFDDFSPYSTLLFTSKFSVKYFFASLFEYGKDVRHLAAATICATGKA
AALELQKHGVIPDLFFEPDGCADIVTMFRERGMTDEHILLPGSNLVDEYLVRELTTLR
NRVTPLCVYMHEAQEHAESIDLAFIDEIYFASPSCVNNFRTLYSSIPENITVTAADTR
TEKEYRSLFGES"
misc_feature 161448..162101
/locus_tag="Cpha266_0142"
/note="Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT); Region: SUMT; cd11642"
/db_xref="CDD:212501"
misc_feature 161448..162050
/locus_tag="Cpha266_0142"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(161469..161471,161538..161546,161691..161699,
161706..161717,161781..161786,161796..161798,
161859..161861,161865..161867,161910..161924,
161994..161996,162000..162005,162009..162011,
162075..162086)
/locus_tag="Cpha266_0142"
/note="active site"
/db_xref="CDD:212501"
misc_feature order(161469..161471,161691..161699,161706..161711,
161781..161786,161913..161915,161994..161996,
162000..162005,162078..162086)
/locus_tag="Cpha266_0142"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212501"
misc_feature order(161481..161498,161502..161504,161697..161699,
161703..161711,161721..161726,161730..161732,
161742..161747,161766..161768,161772..161774,
161778..161780,161790..161795,161817..161819,
161823..161831,161841..161855)
/locus_tag="Cpha266_0142"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212501"
misc_feature 162204..162725
/locus_tag="Cpha266_0142"
/note="Uroporphyrinogen-III synthase HemD; Region: HEM4;
pfam02602"
/db_xref="CDD:202304"
misc_feature 162204..>162689
/locus_tag="Cpha266_0142"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature order(162300..162308,162396..162398,162525..162527,
162597..162599,162663..162677)
/locus_tag="Cpha266_0142"
/note="active site"
/db_xref="CDD:119440"
gene 162814..163638
/locus_tag="Cpha266_0143"
/db_xref="GeneID:4568784"
CDS 162814..163638
/locus_tag="Cpha266_0143"
/note="PFAM: Cobyrinic acid a,c-diamide synthase;
KEGG: rpc:RPC_4497 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="cobyrinic acid a,c-diamide synthase"
/protein_id="YP_910637.1"
/db_xref="GI:119355993"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:4568784"
/translation="MKRSKAVFKFSNSDPMKIAVSGKGGVGKTTISSLIALGLAEKGK
KVLAIDADPNGNLAEALGYNSGESGRITPLIERKALIEERTGARPGEMGGYFVLNPKV
DDFVERFSVPVGGLRTMVMGELKEALSGCYCAENALLRSFLRHLMVDRDEWVVLDMEA
GFEHLTRGTAQSVDLLLIVVEPGARSIATAHKLQRLALQSGIPRTGFLVNKLYSPSQK
EQIIPELEGGEILASIPFDEMAVEADLAARSPFGSCSLMKESLRPLIEALSDNSTG"
misc_feature 162859..163617
/locus_tag="Cpha266_0143"
/note="CO dehydrogenase maturation factor [Cell division
and chromosome partitioning]; Region: CooC; COG3640"
/db_xref="CDD:33438"
misc_feature 162862..163353
/locus_tag="Cpha266_0143"
/note="The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible...; Region:
CooC; cd02034"
/db_xref="CDD:73297"
misc_feature 162877..162900
/locus_tag="Cpha266_0143"
/note="P-loop; other site"
/db_xref="CDD:73297"
misc_feature <163255..163542
/locus_tag="Cpha266_0143"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 164039..165280
/locus_tag="Cpha266_0144"
/db_xref="GeneID:4568785"
CDS 164039..165280
/locus_tag="Cpha266_0144"
/note="KEGG: rpb:RPB_0308 twin-arginine translocation
pathway signal"
/codon_start=1
/transl_table=11
/product="twin-arginine translocation pathway signal"
/protein_id="YP_910638.1"
/db_xref="GI:119355994"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4568785"
/translation="MSNEQKPTSRREFLRSSAFGLSAVLGGLPLIQGCSKESGQEKGA
PNIGTSGKKLKSSYLPITDATPIILAHELGFYKELGIDSEKPVLIRGWAPMAEAFMAG
RFNLTHLLAPIPIYMRYSKGFPVKVVAWDHINGSALTVGKESGIKSCADLGGKQIAIP
YWYSMHNIILQMIAREHGIEPVIQSKTAPLTSKQMNLFVMAPPDMPTAIASKAIDGYI
VAEPFNAAGEVLAGGRIVRFTGDVWKNHPCCVAVMNEKELEDKEWSHKVIQALVKAEL
WALNNVEEAAHILSKDGAQYLPLPEKIVKRAMMKYDLETYGAGSGTGAIQNPDWHASR
ISYEPYQFESATRHIVEMLKQTRVDGDAAFLKALDPGKVHKELMYTAGVEAAAAALGG
LGQFAGVNSASPLVREEVIKV"
misc_feature 164192..164908
/locus_tag="Cpha266_0144"
/note="NMT1-like family; Region: NMT1_2; pfam13379"
/db_xref="CDD:205558"
misc_feature 164222..164893
/locus_tag="Cpha266_0144"
/note="NMT1/THI5 like; Region: NMT1; pfam09084"
/db_xref="CDD:192206"
gene 165457..166257
/locus_tag="Cpha266_0145"
/db_xref="GeneID:4568786"
CDS 165457..166257
/locus_tag="Cpha266_0145"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: pau:PA14_34520 putative sulfonate ABC transporter,
permease protein"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_910639.1"
/db_xref="GI:119355995"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4568786"
/translation="MAKQNDTSNKGSQEMTARLADRGFYLLGVVLFMIVWQIASALKL
FGADFSESFSPLAAMLALFEMIKNGELIHHALPSLRRVLTGLSLAVVVALPLGVLVGY
FKRIEQLTYVVFQFMRMISPLAWMPIAIIIFGVGDVAVIFLLWLVAIWPLILNTSHGA
GRVSPLWVNMAKTMGAKDSGILRKVIIPAAVPDMLTGLRLAVGVSWIILVPAEMLGVP
DGLGYFILDTRDRFRYDQLMATIMAIGMIGYLLDSANRWLIHKFSWKM"
misc_feature 165505..166242
/locus_tag="Cpha266_0145"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature 165760..166215
/locus_tag="Cpha266_0145"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(165784..165795,165799..165828,165835..165840,
165844..165846,165892..165897,165901..165903,
165907..165909,165916..165921,165925..165927,
165937..165942,165949..165951,166000..166002,
166042..166047,166054..166056,166075..166086,
166093..166098,166135..166140,166168..166173,
166180..166185,166189..166194,166201..166206,
166213..166215)
/locus_tag="Cpha266_0145"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(165802..165846,166075..166092)
/locus_tag="Cpha266_0145"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(165844..165846,165877..165879,166093..166095,
166129..166131,166138..166140,166168..166170)
/locus_tag="Cpha266_0145"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(165952..165990,166006..166011,166021..166023)
/locus_tag="Cpha266_0145"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 166278..167090
/locus_tag="Cpha266_0146"
/db_xref="GeneID:4568787"
CDS 166278..167090
/locus_tag="Cpha266_0146"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: mja:MJ0412 putative taurine transport system
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_910640.1"
/db_xref="GI:119355996"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4568787"
/translation="MTSGRQVLISVQHVSKTYKKGGREFHALRDCTFDILKNEFLVVV
GPTGCGKSTLLNLLAGIEFPTSGSILLNGAPVTGPGADRGMIFQDYALLPWRSVLKNA
ELGFEFMKKPMKGDQIKAEAMRYLEMVGLGYAVNKHPGELSGGMKRRASLAMILAIKP
VILLMDGAFNALDSKTKMTMHQEITRIWETEKNTVVFVTSDLDEAVKLADRIIVLNKD
GALEAILVNELPRPRLGSAARDPDFHHRFIAFRETVMNVIKKDAGLRTCAIS"
misc_feature 166296..167054
/locus_tag="Cpha266_0146"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature 166302..166928
/locus_tag="Cpha266_0146"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature 166410..166433
/locus_tag="Cpha266_0146"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature order(166419..166424,166428..166436,166539..166541,
166773..166778,166875..166877)
/locus_tag="Cpha266_0146"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature 166530..166541
/locus_tag="Cpha266_0146"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature 166701..166730
/locus_tag="Cpha266_0146"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature 166761..166778
/locus_tag="Cpha266_0146"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature 166785..166796
/locus_tag="Cpha266_0146"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature 166863..166883
/locus_tag="Cpha266_0146"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene 167113..167934
/locus_tag="Cpha266_0147"
/db_xref="GeneID:4568788"
CDS 167113..167934
/locus_tag="Cpha266_0147"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: mja:MJ0412 putative taurine transport system
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_910641.1"
/db_xref="GI:119355997"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4568788"
/translation="MKTTMNGIAAPEKPLLEIRDVSKTFMKDGKEFLVLERVNLSINE
GEFVCILGPTGCGKSVTLQIVAGLLEQSSGSVILDGKEEHGPGPHKGMVFQEYALLPW
RTVVENVEIGLELKGISKKERRRIAEEQLDLVGLKGAESRMVHEISGGMRQRAAIARA
LANRPKILLMDEPFEALDALTKEEMQIQILKAWEKTKTTIFFVTHDVDEAIFLSDKLC
VMDINPGRVKKIITNTLPRPRHELVCRTDKAFCEMRDQIIQLYSSLKDEELDLVF"
misc_feature 167149..167892
/locus_tag="Cpha266_0147"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature 167158..167817
/locus_tag="Cpha266_0147"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature 167266..167289
/locus_tag="Cpha266_0147"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature order(167275..167280,167284..167292,167395..167397,
167623..167628,167725..167727)
/locus_tag="Cpha266_0147"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature 167386..167397
/locus_tag="Cpha266_0147"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature 167551..167580
/locus_tag="Cpha266_0147"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature 167611..167628
/locus_tag="Cpha266_0147"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature 167635..167646
/locus_tag="Cpha266_0147"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature 167713..167733
/locus_tag="Cpha266_0147"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene 167957..168703
/locus_tag="Cpha266_0148"
/db_xref="GeneID:4568789"
CDS 167957..168703
/locus_tag="Cpha266_0148"
/note="PFAM: cytochrome c, class I;
KEGG: sus:Acid_3506 hypothetical protein"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_910642.1"
/db_xref="GI:119355998"
/db_xref="InterPro:IPR000437"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR008168"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4568789"
/translation="MKTNNAGLRPFARAVLIGSAMISGMLTGCSEKKTVETPPKEPEK
TVAASNESPLKGLRLYLGYCFICHGQTGRGDGPYAASLTAKPADLTNRGYFSARTDQQ
IYDFISKGGIAHGKSIHMRPFGMQLTRQQIMGLVSYVRVLNEGRTVDLEKSSGNTADD
IYGMSCIMCHGSDGNGDGEIARKLNIAIRPLGSKAVQDMSDQQLYAIISGGITDTARV
NASYMPAWSNSLTKEQIDELVAYIRELGKP"
sig_peptide 167957..168043
/locus_tag="Cpha266_0148"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.666) with cleavage site probability 0.553 at
residue 29"
misc_feature 168119..168385
/locus_tag="Cpha266_0148"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
misc_feature 168434..168691
/locus_tag="Cpha266_0148"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 168834..170876
/locus_tag="Cpha266_0149"
/db_xref="GeneID:4568790"
CDS 168834..170876
/locus_tag="Cpha266_0149"
/EC_number="1.2.99.2"
/note="PFAM: Prismane;
KEGG: gme:Gmet_1902 carbon-monoxide dehydrogenase,
catalytic subunit"
/codon_start=1
/transl_table=11
/product="carbon monoxide dehydrogenase"
/protein_id="YP_910643.1"
/db_xref="GI:119355999"
/db_xref="InterPro:IPR000577"
/db_xref="InterPro:IPR004137"
/db_xref="GeneID:4568790"
/translation="MSLKERIKLVHRLNYSKEEVIKHTANKAVAEMVEHMDKEAISNT
FDRFAQQHPQCGYGLTGACCAFCSYGPCRVTEKTLYSVCGKDVDLIVAGNALRRLASG
MAAHGAHAREVFIALKAAAEGSAPIPIKCPEKGVAVARALGIETEGKTIEAICGEIAD
IFIDDLQRSLPKRHETLHALAPKERAELWERLGIIPISAYHECFEVNNLTSHGTDSDF
ESHMQAFLRTVLAYAITTVTSTSLATDIVYGLPRRSKLNVNLGSIVPDGCVNIGINGH
APMVAFAICDIVGTPKIMEKVKRAGADTIRLYGMCCTGGEFIERDLNIPLVAMASSAE
MAVATGAFDAIVVDQQDVLPGMMHVARQFHTRVITTSPSGRKEGAIVLELDYYLKNLD
KIYELAEEILDIAIDNYRNRESKKVHVPNIRAKVELGFSVEEVMKLFNGSMPDKKIHG
LAALLKAGKIRGIVNFGSCGNVRGAVFERNQIIIAKQLIKNDVLVTAHGCSGMGLLFA
GLAHPDASVLCGTGLREVVQAKDIPPVLHVGACTDSTRASQIMAYTANAAAQPNPAMP
FAMVAADPAAEKTMGARYAFVLNGIETYSCVQDNTLASDRFIDYVSNRLRTIVGAAMN
WNPDPYRTSEDILCMLDEKRAALGWPVRDYTIGTKEEIEDKIPDTVEIGRSICTII"
misc_feature 168903..170777
/locus_tag="Cpha266_0149"
/note="carbon-monoxide dehydrogenase, catalytic subunit;
Region: CO_DH_cata; TIGR01702"
/db_xref="CDD:130763"
misc_feature 168915..170780
/locus_tag="Cpha266_0149"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature order(169125..169127,169131..169136,169143..169148,
170562..170567)
/locus_tag="Cpha266_0149"
/note="ACS interaction site; other site"
/db_xref="CDD:73219"
misc_feature order(169134..169136,169143..169145,169155..169157,
169164..169166,170559..170567)
/locus_tag="Cpha266_0149"
/note="CODH interaction site; other site"
/db_xref="CDD:73219"
misc_feature order(170238..170240,170331..170333,170454..170456,
170559..170561,170565..170567)
/locus_tag="Cpha266_0149"
/note="metal cluster binding site [ion binding]; other
site"
/db_xref="CDD:73219"
gene 170931..171131
/locus_tag="Cpha266_0150"
/db_xref="GeneID:4568791"
CDS 170931..171131
/locus_tag="Cpha266_0150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910644.1"
/db_xref="GI:119356000"
/db_xref="GeneID:4568791"
/translation="MLFDCEKQAMERWTIAEHKVCDGCPYRGSVAGEPPFCIMRQNPP
ECFVARLSGRAAVTGQDKPSGA"
gene complement(171220..172038)
/gene="mazG"
/locus_tag="Cpha266_0151"
/db_xref="GeneID:4568792"
CDS complement(171220..172038)
/gene="mazG"
/locus_tag="Cpha266_0151"
/EC_number="3.6.1.19"
/note="functions in degradation of stringent response
intracellular messenger ppGpp; in Escherichia coli this
gene is co-transcribed with the toxin/antitoxin genes
mazEF; activity of MazG is inhibited by MazEF in vitro;
ppGpp inhibits mazEF expression; MazG thus works in
limiting the toxic activity of the MazF toxin induced
during starvation; MazG also interacts with the GTPase
protein Era"
/codon_start=1
/transl_table=11
/product="nucleoside triphosphate pyrophosphohydrolase"
/protein_id="YP_910645.1"
/db_xref="GI:119356001"
/db_xref="InterPro:IPR000886"
/db_xref="InterPro:IPR004518"
/db_xref="InterPro:IPR011551"
/db_xref="GeneID:4568792"
/translation="MPIPRNTTTEERKAAILAKRERSLSEHFERVVSLVDVLRNECPW
DRKQTPASLAHLLLEESYELVHAIDENDDIELKKELGDLFLHLCFQVILAEETQKFTF
SDVFEALSAKLIGRHPHVFGDTVADTEQEVLKNWETLKLQEGRKKLLDGVPKAMSELL
RAYRVQKKVSGVGFDWQNDEGVLDKLVEEIAELKNAATKEEQEEEFGDLLFTVVNYSR
FIGANPEDALRKATNKFMKRFEAVEATVQQSGRNWQAFSAEELDLLWQKAKNEL"
misc_feature complement(171223..171981)
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="nucleoside triphosphate pyrophosphohydrolase;
Reviewed; Region: mazG; PRK09562"
/db_xref="CDD:181956"
misc_feature complement(171619..171954)
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature complement(order(171700..171705,171709..171717,
171721..171735,171742..171744,171769..171771,
171778..171780,171784..171801,171808..171813,
171820..171822,171835..171837,171844..171846,
171853..171858,171865..171870,171877..171879,
171886..171891,171937..171939,171946..171951))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature complement(order(171793..171795,171802..171804,
171850..171852,171859..171861))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature complement(171232..171564)
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature complement(order(171244..171246,171256..171258,
171265..171267,171310..171312,171319..171324,
171331..171360,171364..171366,171373..171381,
171400..171402,171406..171411,171415..171423,
171427..171435,171457..171462,171478..171483,
171517..171525,171532..171534,171544..171546,
171553..171558,171562..171564))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature complement(order(171415..171417,171424..171429,
171436..171438,171463..171465,171472..171474,
171484..171486,171511..171519))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="active site"
/db_xref="CDD:212136"
misc_feature complement(order(171415..171417,171424..171429,
171463..171465,171472..171477))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
misc_feature complement(order(171415..171417,171424..171426,
171463..171465,171472..171474))
/gene="mazG"
/locus_tag="Cpha266_0151"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212136"
gene 172146..172817
/locus_tag="Cpha266_0152"
/db_xref="GeneID:4568793"
CDS 172146..172817
/locus_tag="Cpha266_0152"
/note="PFAM: short-chain dehydrogenase/reductase SDR; KR;
KEGG: cte:CT2085 oxidoreductase, short-chain
dehydrogenase/reductase family"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_910646.1"
/db_xref="GI:119356002"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:4568793"
/translation="MELKGSIAVVTGSSTGIGYHTARLLLEKGAEVYGLSRRATAVRH
DRFHWLQCDVTIAEEIDRAFDAVLERHGCVDILVNNAGFGLFGDLETLQPDEWHRLLA
TNLTAVFLCTRRVIPSMKERRRGMILNIGSVAGKRGFKGGAAYSATKFAINGLSESLM
DDLREFGIRVSCVNPGSVETEFFDRAGMQPKKAMDPAHLAGFLVSIIELPDSMLPDQI
TVRPL"
misc_feature 172146..172760
/locus_tag="Cpha266_0152"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:180183"
misc_feature 172164..>172703
/locus_tag="Cpha266_0152"
/note="17beta hydroxysteroid dehydrogenase-like, classical
(c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374"
/db_xref="CDD:187632"
misc_feature order(172179..172181,172185..172196,172254..172256,
172299..172307,172383..172394,172452..172454,
172533..172541,172578..172580,172590..172592,
172677..172679,172683..172691)
/locus_tag="Cpha266_0152"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187632"
misc_feature order(172455..172457,172539..172541,172578..172580,
172590..172592)
/locus_tag="Cpha266_0152"
/note="active site"
/db_xref="CDD:187632"
misc_feature order(172539..172547,172560..172562,172578..172580,
172671..172676,172692..172694)
/locus_tag="Cpha266_0152"
/note="steroid binding site; other site"
/db_xref="CDD:187632"
gene 172835..174262
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/db_xref="GeneID:4568794"
CDS 172835..174262
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="in Escherichia coli this protein is involved in the
biosynthesis of the hypermodified nucleoside
5-methylaminomethyl-2-thiouridine, which is found in the
wobble position of some tRNAs and affects ribosomal
frameshifting; shows potassium-dependent dimerization and
GTP hydrolysis; also involved in regulation of
glutamate-dependent acid resistance and activation of
gadE"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="YP_910647.1"
/db_xref="GI:119356003"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004520"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005289"
/db_xref="GeneID:4568794"
/translation="MQQETGIHPIVQCDPIAAIATPLGVGALAVVRISGATAFDIAGR
VFRKARDPHQPLSETPGYTAHFGRLYDGLTLIDEVIALVFRSPSSFTAEDMVEFTCHG
GPVVTRHVLQLLLDNGCRLAEPGEFTRRAFLNGKIDLLQAEAIGEMIHARSESAYRTA
VIQMKGDLSATLGALREKLLRSCALLELELDFSEEDVEFQSREELRVEIASLQSEVAR
LVDSYQHGRLLTEGVATVIAGRPNAGKSTLLNTLLGEERAIVSHMPGTTRDYIEECFI
HDKTMFRLTDTAGLRETGEEIEHEGVRRSRMKMAEADLLLYLLDLSREGMAEEIKEIV
ALKAAHASSKFLVVANKIDLVPDATTLLCRLGEEAGCEAIGISARQKLGIDELKSRMS
SMVEGLDKLHEASVLVTSLRHYEALRNAGDALRNAQNLLDEQADTELIAFELRAALDY
VGEITGKVVNEEILHAIFERFCIGK"
misc_feature 172874..174259
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:179996"
misc_feature 172877..173242
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature 173525..174022
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature 173549..173572
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature order(173558..173560,173564..173575,173882..173887,
173891..173893,173963..173971)
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature 173594..173644
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature 173633..173635
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature order(173687..173719,173723..173767)
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature 173690..173701
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature 173882..173893
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature 173963..173971
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature 174038..174250
/gene="trmE"
/locus_tag="Cpha266_0153"
/gene_synonym="mnmE; thdF"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene 174413..174754
/locus_tag="Cpha266_0154"
/db_xref="GeneID:4568795"
CDS 174413..174754
/locus_tag="Cpha266_0154"
/note="SMART: Rhodanese domain protein;
KEGG: plt:Plut_0533 rhodanese-like"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_910648.1"
/db_xref="GI:119356004"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:4568795"
/translation="MIQKGALLVDVREPHEVARKSFDVPDSMLIPLSQLHKRFKEIPA
KRQTVIACRSGNRSVTAVRFLMSHGYSKAVNLQDGIIRWEKEGLPVRRPLKQKSGSWF
TRLFGRKSPVQ"
misc_feature 174413..174664
/locus_tag="Cpha266_0154"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature 174566..174568
/locus_tag="Cpha266_0154"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene complement(175164..175500)
/locus_tag="Cpha266_0155"
/pseudo
/db_xref="GeneID:4568796"
gene complement(175509..176249)
/locus_tag="Cpha266_0156"
/db_xref="GeneID:4568797"
CDS complement(175509..176249)
/locus_tag="Cpha266_0156"
/note="PFAM: protein of unknown function DUF169;
KEGG: mma:MM2037 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910649.1"
/db_xref="GI:119356005"
/db_xref="InterPro:IPR003748"
/db_xref="GeneID:4568797"
/translation="MTPEQLSQTLVTSEELVYHPIAVKFVTSLSELPEGIHKFGASSG
ERLPKSFLCAMWGDCLRGAAPFYTTREHQLCGGGAIAAGFGSLLPLEVAEKFMIGDGK
LFGTMKALRCSMESTMPFEDGEFEAQIIGPLSAMNNDTLRPDVVLIVCKPYQGQHILR
AYGFDSGELVHGIAGGSTCEMVSSYVKKTGKPTFTLGDTGGNAGLSLEPDELLLAFPY
DKLETAVSNLSRICRTSTMHRHTIVHER"
misc_feature complement(175566..176231)
/locus_tag="Cpha266_0156"
/note="Uncharacterized ArCR, COG2043; Region: DUF169;
pfam02596"
/db_xref="CDD:190358"
gene 176617..177366
/locus_tag="Cpha266_0157"
/db_xref="GeneID:4568453"
CDS 176617..177366
/locus_tag="Cpha266_0157"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: bld:BLi02990 hypothetical protein"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_910650.1"
/db_xref="GI:119356006"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4568453"
/translation="MKRVIIIGATSGIGRALASLYIAEGWTTGLCGRRTAFLEDLRSV
AGKQVLVRAMDVTDTVAARKVFVELVQVMGGVDLVIISAGTGYLDPSFPWEKELETLK
TNVTGFAAIAHAAFEVFRHQGFGHLAGISSIAAIRGGSVPAYHASKAFVSNYLQGVRC
LAAASGLQIHVTDILPGFVDTAMAKGDGLFWVASPEKAALQIFRAISKKKYRVCITKR
WQIIAILLRVMPSGVYNGLLCRKKGKVDRGM"
sig_peptide 176617..176673
/locus_tag="Cpha266_0157"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.811) with cleavage site probability 0.735 at
residue 19"
misc_feature 176620..177315
/locus_tag="Cpha266_0157"
/note="short chain dehydrogenase; Provisional; Region:
PRK08251"
/db_xref="CDD:181324"
misc_feature 176626..177306
/locus_tag="Cpha266_0157"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(176638..176640,176644..176649,176653..176655,
176710..176718,176860..176868,177004..177012,
177046..177048,177058..177060,177142..177153)
/locus_tag="Cpha266_0157"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(176926..176928,177010..177012,177046..177048,
177058..177060)
/locus_tag="Cpha266_0157"
/note="active site"
/db_xref="CDD:187535"
gene complement(177557..177979)
/locus_tag="Cpha266_0158"
/pseudo
/db_xref="GeneID:4568454"
gene 178019..178270
/locus_tag="Cpha266_0159"
/pseudo
/db_xref="GeneID:4568455"
gene 178891..181584
/locus_tag="Cpha266_0160"
/db_xref="GeneID:4568456"
CDS 178891..181584
/locus_tag="Cpha266_0160"
/note="PFAM: TPR repeat-containing protein;
SMART: TIR protein; Tetratricopeptide domain protein;
KEGG: ccr:CC1413 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910651.1"
/db_xref="GI:119356007"
/db_xref="InterPro:IPR000157"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="GeneID:4568456"
/translation="MTTTRLRRQYQYFAFISYSHTDAKVAEWLHRKLESYRLPNAVLR
KSDGQLPRHVRPIFRDIADLSSGSLARTLREEIGQSQFLIVICSPDSAKSEWVEMEVS
HFLTLRGHEFVIPVIIKGTPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKT
VSALLDIKYDSLYDRHRRRQRRQRMFAATVVTVMFVVVLTASLFSFIQWNRAEQRRAE
AEQLLNYLLLDLHPKLKQFGRLDILESVAEKSREYIDYISTDVRDPIDAIQAISLRRN
MAEVYQSVGKLENAEALHLKNISVLKKLEQIDPKMEIIHLLKGEEHQALASIRKTEGR
FQDALHESLTAFSVFKSFVSVKSDARWRSAKASSEQRLSDAYYDLGMGKQAAWHINSA
VSDFRRILHEHSAGDNSYKADLAYALVSKSRVEVKWGTTSRAYSVFVEASELFRQHLE
EHPEDREVRASFANVVSDLAAMLKDMGRLEDALIYWDLAIDAERELVTFEPLNVRWHA
DLSETMMNKANALGRLGRTGEGFLLYEEVSRHQRKLIALQPKVARWRATYAWCRHNMA
IEYARLGKNKGAIDLWNDAIATIEQLRKDGRAKREWLLDLCNMLDQRATITAENGNFE
KAEQDIKASQAIRASLISDSNSSPDELSQMGLNQARKALLDYYRKDYSHAMVSIKAAE
GYLRRAVKLDEANCEWRAHLAGTLRNSSVIHRAAGFPDKAKRAIDECIVILEKLRIRQ
PSDKKIRVDLSQAYNNQGNLYNDFGSIKSSVSAWEKSLTLDSDPAQREFLATRLGTLA
YQYILLQDPGKSEMSARKALEVDAAPWIQINLGHALFLQDMREAAKAQYLNAMRKDGK
ILASISADFVDMENHGIHVRNAIQMLDELRGAALETNNEKQ"
misc_feature 178933..179256
/locus_tag="Cpha266_0160"
/note="TIR domain; Region: TIR_2; pfam13676"
/db_xref="CDD:205852"
misc_feature 180409..180663
/locus_tag="Cpha266_0160"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature 181144..181452
/locus_tag="Cpha266_0160"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(181144..181149,181153..181158,181165..181170,
181255..181260,181282..181287,181294..181299,
181372..181377,181384..181389,181396..181401)
/locus_tag="Cpha266_0160"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(181162..181164,181198..181200,181210..181212,
181219..181221,181282..181284,181318..181320,
181330..181332,181339..181341,181381..181383,
181417..181419,181429..181431,181438..181440)
/locus_tag="Cpha266_0160"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene complement(181999..182385)
/locus_tag="Cpha266_0161"
/db_xref="GeneID:4568457"
CDS complement(181999..182385)
/locus_tag="Cpha266_0161"
/note="KEGG: cte:CT0487 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910652.1"
/db_xref="GI:119356008"
/db_xref="GeneID:4568457"
/translation="MKSFIDAVKNNKTGFVIKNSVFLPFHCEILTIWLGKEMSLLSTP
DLITDLTDAEILGIREGNYYTNLVFRKRGDLAKELGHHKGHIILRAAEKGADIFQVEN
IHYVRIGFHDHHKELSLEMIDNPFDL"
gene complement(182418..183893)
/locus_tag="Cpha266_0162"
/db_xref="GeneID:4568458"
CDS complement(182418..183893)
/locus_tag="Cpha266_0162"
/note="KEGG: plt:Plut_1726 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910653.1"
/db_xref="GI:119356009"
/db_xref="GeneID:4568458"
/translation="MLPTLTRHALCLLVFVLVVAGVTGISGILIAAEAFDINAAASPV
AIENNLPPVWLVAPFATLLVMIATGPLLFHRFWEQHYPKVSTGLGFIVAVYYVFMIEN
GLQVLEHTLEEYLSFIALISSLFVVAGGILIRIERRGTPLINASLLFIGAVISNLVGT
TGASMLLIRPYMRINAGRIKAFHIVFFIIIVSNIGGALTPVGDPPLFLGFLKGVPFFW
VFPKLILPWIITIAGLLFIFIFLDAKAGHGKMKGTEPDGEISITGKRNFFFLAIIITS
VFLDPAVIEGVPSLQKLFHLPFGIRELIMFIVAVTAYKYSNPAAFKGNEFNFEPIKEV
AFLFIGIFATMIPALELIGNYAETHAEVFSVSRFYWLTGVLSGVLDNAPTYLNFFAGA
LGKFGLDIDIPEDIILFANGVNSAIQGDVSSDIYLMAISVASVFFGALTYIGNAPNFM
VKNIAAQADVDVPDFLEYIYKYSIPILLPFLMLIWVLFFNY"
sig_peptide complement(183798..183893)
/locus_tag="Cpha266_0162"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.998) with cleavage site probability 0.963 at
residue 32"
misc_feature complement(182442..183737)
/locus_tag="Cpha266_0162"
/note="Na+/H+ antiporter NhaD and related arsenite
permeases [Inorganic ion transport and metabolism];
Region: ArsB; COG1055"
/db_xref="CDD:31255"
misc_feature complement(182433..183506)
/locus_tag="Cpha266_0162"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
misc_feature complement(order(182436..182474,182556..182615,
182757..182804,182859..182897,182931..182939,
182976..183020,183042..183080,183174..183218,
183279..183350,183363..183371,183372..183410,
183414..183464))
/locus_tag="Cpha266_0162"
/note="transmembrane helices; other site"
/db_xref="CDD:29728"
gene complement(183989..184252)
/locus_tag="Cpha266_0163"
/db_xref="GeneID:4568459"
CDS complement(183989..184252)
/locus_tag="Cpha266_0163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910654.1"
/db_xref="GI:119356010"
/db_xref="GeneID:4568459"
/translation="MIEKRKNKPNQTETISSILFSASASTDFTNSRAKENPFIPTVNN
VNNRYAIAQHQMAQEALSFQYRSSPDCFIKAVSVACRIRELLT"
sig_peptide complement(184151..184252)
/locus_tag="Cpha266_0163"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.882) with cleavage site probability 0.774 at
residue 34"
gene 184699..186093
/locus_tag="Cpha266_0164"
/db_xref="GeneID:4568460"
CDS 184699..186093
/locus_tag="Cpha266_0164"
/note="TIGRFAM: putative methyltransferase;
KEGG: rba:RB3371 hypothetical protein"
/codon_start=1
/transl_table=11
/product="putative methyltransferase"
/protein_id="YP_910655.1"
/db_xref="GI:119356011"
/db_xref="InterPro:IPR011610"
/db_xref="GeneID:4568460"
/translation="MSLKFSSSFLLNSIDAWEEDRKDRFDLDALTQSFHESVPALGFI
DWKITVVERGYAETVLPLTPNSSNQYIAHQGPLMLLAAEYTGGLALTSLFHRVPIIGF
WPSVDENAGYMWGAKASIKWITPSCHNLTCKARIEKERWEGLAKRFANSNKVVVTIPV
KMFNGDKLVAVADFTYWAQDINSLKRNAYDVEKIDLLYEHKTKTTAKLIVGLRALEQE
KPIDQRRFDDPYAFMLAGKHGITLARRFSVATPQLQNMISARTQHLDECVKQFSLGKT
KFNVVNIGAGYDSRFWRLNIANAVIYDLDLPVMLHERKRIFDYSRNNAIHNVDIDLEI
QSIDQALLEKSDFDSELPTFFIWEGGSMYFMDENIESILGSIRRIVNQDSRIWLDYVS
KDLVEISTGIPEAEGFIYNIRKMGEPFINGYNDIGVLAGKYDLVIAQNIRSGELLNIE
EDVYSHYSFCVLKS"
misc_feature 184825..185226
/locus_tag="Cpha266_0164"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(184912..184914,185011..185013,185032..185043)
/locus_tag="Cpha266_0164"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(184915..184917,184921..184923,184930..184932,
185014..185028,185032..185034)
/locus_tag="Cpha266_0164"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature order(184918..184920,184945..184950,184957..184962,
185011..185013)
/locus_tag="Cpha266_0164"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
misc_feature 185332..185826
/locus_tag="Cpha266_0164"
/note="Leucine carboxyl methyltransferase; Region: LCM;
pfam04072"
/db_xref="CDD:202877"
gene 186106..188586
/locus_tag="Cpha266_0165"
/db_xref="GeneID:4568461"
CDS 186106..188586
/locus_tag="Cpha266_0165"
/note="PFAM: response regulator receiver; ATP-binding
region, ATPase domain protein domain protein; Hpt domain
protein;
KEGG: bxe:Bxe_B2006 periplasmic sensor hybrid histidine
kinase"
/codon_start=1
/transl_table=11
/product="multi-sensor hybrid histidine kinase"
/protein_id="YP_910656.1"
/db_xref="GI:119356012"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="GeneID:4568461"
/translation="MPASYSSRPSVLKRGVDFFQNDYERNKLTIDYIRYIGLWGHPLY
YLLCAFIFPQPYESFELRFASAISFIPILFHQRYPEKFRSLLMLYWYLWLTFTFPVVF
TYLMLMNDFSGLWLVAETVMLFVFIIFITNYFLLFVLFFSGILIAYAGFVLDTGAHLL
ITKEIIEYFVSIPIAILLGLLVNSTNKKGELAQERNSVLQSLAGSIAHEMRNPLGQIR
HCLYSIQNLLPQVNPEECDKPLGKEKLETLYERVSRGQLAVKRGAQVIDMVLSEVRER
PIGPESFTYLSATRVTRNALDEFGYESEQDRRRVHLETKDSFIFHINETLFVFVLFNL
LKNALFYFKTHPHSEISVRLERGERFNYLYFRDTGPGISSETLPFIFDSFYTTGKASG
TGLGLSYCKRIMTAFGGSITCKSVEGEYSEFILSFPVISEQDMNLYTERVIAVGQADF
QGKRLLIVDDSALYRSILKKYFAPLQVEIDEAAGGREALDLLSIRRYDLVIMDLNMPS
MSGYETVERLRRGEAGPQSCSVPVVAHSSESVMTARSKSENAGMQAFIAKPCSQAELI
SSLRSVLDTIPERNYPGSPFSGRKVLLVDDSALNRDLLAMYLRDSGIEVTVSDSGAEA
LNILRNQDFELLITDIHMPGMDGLELTRTIRSSRSEQLCRLPIIGLSGAVEEEVVARK
AGMNDFRIKTDSPNLLLASIGRQLSVSGAEPIREKVVKEYPQAVKVTSPYGLSASESE
ELRQIFLEEFRDTPVNLRRALKENDMRSLKEESHKLKGSAAILGAMALSKAAEELELH
CRFERRDDPAPKIERIIEALDELSARND"
misc_feature 186358..187404
/locus_tag="Cpha266_0165"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 187129..187386
/locus_tag="Cpha266_0165"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(187198..187200,187204..187206,187210..187212,
187216..187221,187285..187296,187342..187344,
187348..187350,187363..187368,187372..187374)
/locus_tag="Cpha266_0165"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature order(187210..187212,187216..187218,187285..187287,
187291..187293)
/locus_tag="Cpha266_0165"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 187468..187815
/locus_tag="Cpha266_0165"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 187471..187824
/locus_tag="Cpha266_0165"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(187480..187485,187612..187614,187636..187638,
187711..187713,187768..187770,187777..187782)
/locus_tag="Cpha266_0165"
/note="active site"
/db_xref="CDD:29071"
misc_feature 187612..187614
/locus_tag="Cpha266_0165"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(187621..187626,187630..187638)
/locus_tag="Cpha266_0165"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 187777..187785
/locus_tag="Cpha266_0165"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 187876..188211
/locus_tag="Cpha266_0165"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 187879..188223
/locus_tag="Cpha266_0165"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(187888..187893,188020..188022,188044..188046,
188116..188118,188167..188169,188176..188181)
/locus_tag="Cpha266_0165"
/note="active site"
/db_xref="CDD:29071"
misc_feature 188020..188022
/locus_tag="Cpha266_0165"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(188029..188034,188038..188046)
/locus_tag="Cpha266_0165"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 188176..188184
/locus_tag="Cpha266_0165"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 188323..188577
/locus_tag="Cpha266_0165"
/note="Histidine Phosphotransfer domain, involved in
signalling through a two part component systems in which
an autophosphorylating histidine protein kinase serves as
a phosphoryl donor to a response regulator protein; the
response regulator protein is...; Region: HPT; cd00088"
/db_xref="CDD:28972"
misc_feature order(188425..188427,188434..188439,188482..188484,
188491..188493)
/locus_tag="Cpha266_0165"
/note="putative binding surface; other site"
/db_xref="CDD:28972"
misc_feature 188425..188427
/locus_tag="Cpha266_0165"
/note="active site"
/db_xref="CDD:28972"
gene 188924..189253
/locus_tag="Cpha266_0166"
/db_xref="GeneID:4568462"
CDS 188924..189253
/locus_tag="Cpha266_0166"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: pmt:PMT0296 TPR repeat"
/codon_start=1
/transl_table=11
/product="TPR repeat-containing protein"
/protein_id="YP_910657.1"
/db_xref="GI:119356013"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:4568462"
/translation="MMVRRICFFSLMLSLVFFMSGADNVGPLTAEDYYKSGKIKYHKD
DYSGAIEDYNKAAELAPDVAKIFGSRGAARRKLGDREGAIADAQKAARLGDKDAQRIL
RMLDLGW"
sig_peptide 188924..188992
/locus_tag="Cpha266_0166"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.999) with cleavage site probability 0.559 at
residue 23"
misc_feature 189011..189202
/locus_tag="Cpha266_0166"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 189014..>189220
/locus_tag="Cpha266_0166"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(189014..189019,189023..189028,189035..189040,
189125..189130,189134..189139,189146..189151)
/locus_tag="Cpha266_0166"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(189032..189034,189068..189070,189080..189082,
189089..189091,189134..189136,189170..189172,
189182..189184,189191..189193)
/locus_tag="Cpha266_0166"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene complement(189446..190774)
/locus_tag="Cpha266_0167"
/db_xref="GeneID:4568463"
CDS complement(189446..190774)
/locus_tag="Cpha266_0167"
/EC_number="1.4.1.3"
/note="PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal;
Glu/Leu/Phe/Val dehydrogenase, dimerisation region;
KEGG: cte:CT2023 glutamate dehydrogenase"
/codon_start=1
/transl_table=11
/product="glutamate dehydrogenase"
/protein_id="YP_910658.1"
/db_xref="GI:119356014"
/db_xref="InterPro:IPR006095"
/db_xref="InterPro:IPR006096"
/db_xref="InterPro:IPR006097"
/db_xref="GeneID:4568463"
/translation="MTTWPLMSERKESCECAIPYDIIETGIHSKPNPFKTAQRQLDEA
AALIGLDPAAHQLLRWPLRELHVAMPVKMDDGSTKVFRGFRVQYNDARGPNKGGIRFH
AEETIDTIRALAAWMTWKTAVLDLPLGGAKGGVICNPKSMSPGELERLSRAYIRQAGR
ILGLEKDVAAPDIYTTPQIMAWMADEYSFMQGNNEFGVISGKPLALGGSAGRNDATAR
GGIACVIEAAKELGIELQGATAAIQGYGNVGSFAHKLATELLGMKIIAVSDSGGGIYN
PDGLLYDEVKAHKEKTGSVTGFPGSDSVSDETLLELNVTVLFPSALEQVITEHNAQNI
RAGIIAELANGPTTPEADKILFENGCYVIPDFLCNAGGVTVSYFEMVQNTYGYYWEED
DVRKRLEKKMKTAFHSVHETSRKYKVHNRLGACIVAIERVAEAMKLRGWY"
misc_feature complement(189449..190681)
/locus_tag="Cpha266_0167"
/note="Glutamate dehydrogenase/leucine dehydrogenase
[Amino acid transport and metabolism]; Region: GdhA;
COG0334"
/db_xref="CDD:30682"
misc_feature complement(190205..190594)
/locus_tag="Cpha266_0167"
/note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;
Region: ELFV_dehydrog_N; pfam02812"
/db_xref="CDD:202408"
misc_feature complement(189473..190156)
/locus_tag="Cpha266_0167"
/note="NAD(P) binding domain of glutamate dehydrogenase,
subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076"
/db_xref="CDD:133445"
misc_feature complement(order(189743..189751,189809..189814,
189965..189970,190031..190039))
/locus_tag="Cpha266_0167"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133445"
gene complement(190837..191235)
/locus_tag="Cpha266_0168"
/db_xref="GeneID:4568464"
CDS complement(190837..191235)
/locus_tag="Cpha266_0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910659.1"
/db_xref="GI:119356015"
/db_xref="GeneID:4568464"
/translation="MTEIKRKGLFSKIESRIDAIVLVEETTIGFFFVAGLQAILSIWQ
GLPVLVDAAIFALSSLFIRQFQSRVAAITLTLYAAVSVALAATNTAGAYFGGNNNIFL
SAILLWASIRAAEATIKLHGKFAIPENPKK"
gene complement(191334..192296)
/locus_tag="Cpha266_0169"
/db_xref="GeneID:4568465"
CDS complement(191334..192296)
/locus_tag="Cpha266_0169"
/note="KEGG: mlo:mlr7467 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910660.1"
/db_xref="GI:119356016"
/db_xref="GeneID:4568465"
/translation="MNLQLGQAIKIVAQTKVYLLYRTMVYGAIVGVVAIVLGILVLIG
TVFGSGAAFVLFLITLFAGSFGFRLLRDYVLYLLQAGHIALITEIAETGTLPPGISQT
SWAKEKVMKYYKEVSVLALVDQLVKGVLVTLNRTIFNVFNALPIPALEGLAGIVQRIV
NFSLTYIDESVIAYTFRTRNENVFDAAKSGILVYCQSWKAVLMNAVALTVLSYLFVIL
MTTLFMIPLGAVSLMLPSSWSFVKFALFVLALFLGISTKWILFDPIACTSTLLTFLNE
AETTKPDPAWESKIEMVSDQFRTLKTKAGEMMRGTAKSREAQST"
gene complement(192336..193247)
/locus_tag="Cpha266_0170"
/db_xref="GeneID:4568466"
CDS complement(192336..193247)
/locus_tag="Cpha266_0170"
/note="TIGRFAM: monofunctional biosynthetic peptidoglycan
transglycosylase;
PFAM: glycosyl transferase, family 51;
KEGG: cch:Cag_0146 monofunctional biosynthetic
peptidoglycan transglycosylase"
/codon_start=1
/transl_table=11
/product="monofunctional biosynthetic peptidoglycan
transglycosylase"
/protein_id="YP_910661.1"
/db_xref="GI:119356017"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR011812"
/db_xref="GeneID:4568466"
/translation="MKLVKNLFILLLLFFIADIARYAFYPDIGRLAYENPKKSAFMLY
REAEWEKQGLYEKTVKQQWVPIEKVSPNLIKAVLIAEDDKFWQHEGFDYKAIGVALEK
NIAEKKFKMGGSTISQQLAKNLFLSPSKNPIRKIKEAILTWRIEKTLTKRRILEIYIN
VAEWGDGIFGIEQASRHYYGVSAARLTAQQASKLASVLPNPIRYSPKGSSSYVHNRSR
KILAIMKKRGIVLPDYDAVMTTAQPDTTTVDSVTIGIPQELIDQAASPDSSIDKTIEA
DHAPHDGAPGQKENTAIPDSPNSEKQP"
misc_feature complement(<192528..193199)
/locus_tag="Cpha266_0170"
/note="Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane];
Region: MrcB; COG0744"
/db_xref="CDD:31087"
misc_feature complement(192558..193133)
/locus_tag="Cpha266_0170"
/note="monofunctional biosynthetic peptidoglycan
transglycosylase; Provisional; Region: mtgA; PRK00056"
/db_xref="CDD:178830"
gene 193428..193844
/locus_tag="Cpha266_0171"
/db_xref="GeneID:4568467"
CDS 193428..193844
/locus_tag="Cpha266_0171"
/note="KEGG: plt:Plut_1980 C-type cytochrome, putative"
/codon_start=1
/transl_table=11
/product="C-type cytochrome, putative"
/protein_id="YP_910662.1"
/db_xref="GI:119356018"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4568467"
/translation="MKRVFIGLVTGLLCFPVAQSRAATPDGKEVFERNCSVCHSVNPP
SKSAPPILPISGRYHMQFSTKSAGVAAMAAFMKAPSKQKSVIEPEAITRFGLMPPMAL
GDAELTAVAGWVWDQGGSASGRGSGRGAGQGAGGCN"
sig_peptide 193428..193496
/locus_tag="Cpha266_0171"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.984 at
residue 23"
misc_feature 193503..193772
/locus_tag="Cpha266_0171"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene complement(193926..194001)
/locus_tag="Cpha266_R0002"
/note="tRNA-Arg4"
/db_xref="GeneID:4568468"
tRNA complement(193926..194001)
/locus_tag="Cpha266_R0002"
/product="tRNA-Arg"
/db_xref="GeneID:4568468"
gene complement(194046..195920)
/locus_tag="Cpha266_0172"
/db_xref="GeneID:4568469"
CDS complement(194046..195920)
/locus_tag="Cpha266_0172"
/note="TIGRFAM: DNA mismatch repair protein MutL;
PFAM: ATP-binding region, ATPase domain protein domain
protein; DNA mismatch repair protein, C-terminal domain
protein;
KEGG: plt:Plut_1981 DNA mismatch repair protein"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutL"
/protein_id="YP_910663.1"
/db_xref="GI:119356019"
/db_xref="InterPro:IPR002099"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR013507"
/db_xref="GeneID:4568469"
/translation="MAKIARLPDNVANKISAGEVVQRPASVIKELLENAIDACASKIT
VTIKDAGKELVQIVDNGIGMSRQDALLSVERFATSKISGVEDLDSLMSLGFRGEALPS
IASVSQFELKTKPEGALLGFRFRCDGGEPVEESEVNAEKGTTITVRNLFYNVPARRKF
LKSNATEFRHIFESVKSLALAYPEIEWKMVSDDEELFHFRTPDIYERLDAFYGENFSL
SLIPVSEENDYLSISGFLGKPGMQKRQKLDQYIYVNRRIIQNRMLSQALQQAYGELLV
ERQAPFALLFLGIDPSRIDVNVHPAKLEVKFEDERSVRTMFYPVIKRTIQLHDFSPDA
AEKEPCSIKEGTLDCSSRKLGFQDIAEPASTTSTLYANYRQGAFGDTPFERPAYAEKE
PRPSSINTGFERFEPDLREGGDLFSTTLQARPYEDDNTPDPGENDPKIWQLHNKYIIC
QIKTGMMIIDQHVAHERVLYERAVDVMNQNVPNSQQLLFPQKIELRAWEYEVFEEIRD
DLYRLGFNLRSFGAKTVMIEGIPQDVRPGTEVTILQDMITEFQENSSKLKLERRENLA
RSYSCRNAIMAGQKLSLEEMRSLIDNLFATRVPYTCPHGRPVIIKLSLDQLDRMFGRK
"
misc_feature complement(194052..195914)
/locus_tag="Cpha266_0172"
/note="DNA mismatch repair protein; Reviewed; Region:
mutL; PRK00095"
/db_xref="CDD:178860"
misc_feature complement(195477..195851)
/locus_tag="Cpha266_0172"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(195486..195488,195492..195497,
195510..195512,195543..195545,195621..195632,
195729..195734,195738..195740,195744..195746,
195750..195752,195810..195812,195819..195821,
195831..195833))
/locus_tag="Cpha266_0172"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(195819..195821)
/locus_tag="Cpha266_0172"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(195624..195626,195630..195632,
195732..195734,195738..195740))
/locus_tag="Cpha266_0172"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(194946..195311)
/locus_tag="Cpha266_0172"
/note="MutL_Trans: transducer domain, having a ribosomal
S5 domain 2-like fold, conserved in the C-terminal domain
of DNA mismatch repair (MutL/MLH1/PMS2) family. This
transducer domain is homologous to the second domain of
the DNA gyrase B subunit, which is...; Region: MutL_Trans;
cd00782"
/db_xref="CDD:48466"
misc_feature complement(195015..195017)
/locus_tag="Cpha266_0172"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48466"
misc_feature complement(194178..194597)
/locus_tag="Cpha266_0172"
/note="MutL C terminal dimerisation domain; Region:
MutL_C; pfam08676"
/db_xref="CDD:192121"
gene 196237..198909
/locus_tag="Cpha266_0173"
/db_xref="GeneID:4568470"
CDS 196237..198909
/locus_tag="Cpha266_0173"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC;
PFAM: cation transporting ATPase domain protein domain
protein; Haloacid dehalogenase domain protein hydrolase;
cation transporting ATPase domain protein; E1-E2
ATPase-associated domain protein;
KEGG: plt:Plut_1234 ATPase, E1-E2 type"
/codon_start=1
/transl_table=11
/product="P-type HAD superfamily ATPase"
/protein_id="YP_910664.1"
/db_xref="GI:119356020"
/db_xref="InterPro:IPR000695"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR004014"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006068"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:4568470"
/translation="MKTGHLTCWHCLTTEDVFNKLQTTSGGLSSSEAFRLLGVYGPNR
IHAERRTSPLKLLVAQFKNVLILTLLIATLLSVYLGHGFEAVAIAVIVLFAVLLGFVQ
EFRAEKAIEALREMAAPLARVMRDGKEAVINASELVPGDILLLAVGDRVAADARLLQA
SNLRADEASLTGESLPSEKDVEAVLSEDAAPGDQKNMVFAGTSISYGRASAVVVSTGM
ATEFGRIAAMLQNVETEKTPLQKNLDKVGSALAGVALLIVLVIVVFGLFRGQSFIEML
IFGIALAVAVVPEALPAVVTISLALGVQRMVKRNALMRRLPVVETLGSTTVICSDKTG
TLTRDEMTVRTLYSSGVFIDVNGSGYNPEGSLAVVDGGSLPESLNELLLAGVLCNDAR
IVKSDSGFWGVAGDPTEGALLVVARKAGLNELTLRQLYERLDERPFSSETKKMMTLHR
MGETTKAFIKGAPEVLLADSVAVRCSEGVKALDDPLRAALLAEADNLGKRALRVLAFA
VKDGADMSSAGDGMTFLGFAGMIDPPRAEAGDAVRQCLAAGIRPVMITGDHPLTAEAI
ARELGILRDGKVVTGAMLQTMSAEELRHSVGSVSVFARVAPEHKLRIVEALQMNGEVV
AMTGDGVNDAPALKKADIGISMGLTGTDVSKEASAMMLMDDNFATIVAAVEEGRGIYD
NIKKYLTYLLSSNIGELGLMAGATLMGIPLPLSAVQILYVNLATDGFPALALAVDPSE
RDIMLRSPNNPKKGIFTPSVLAFMLTGGIWSTMVNLSLFLWAFASGRTLQESMTMTFV
SLVLIQFFKAYNFRSEKVSLFVRPFANRWLNLAIVWELVMLIAIINVPFLQRLFGTCL
LTPEDWVIVIGSAMTVVPIIELLKWLMRSGRFGF"
misc_feature 196261..>196425
/locus_tag="Cpha266_0173"
/note="Cation transporter/ATPase, N-terminus; Region:
Cation_ATPase_N; pfam00690"
/db_xref="CDD:201397"
misc_feature 196270..198900
/locus_tag="Cpha266_0173"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: MgtA; COG0474"
/db_xref="CDD:30822"
misc_feature 196540..197199
/locus_tag="Cpha266_0173"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature 197392..197664
/locus_tag="Cpha266_0173"
/note="Putative hydrolase of sodium-potassium ATPase alpha
subunit; Region: Hydrolase_like2; pfam13246"
/db_xref="CDD:205426"
misc_feature <197803..198150
/locus_tag="Cpha266_0173"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
misc_feature 197902..197904
/locus_tag="Cpha266_0173"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature 198367..198882
/locus_tag="Cpha266_0173"
/note="Cation transporting ATPase, C-terminus; Region:
Cation_ATPase_C; pfam00689"
/db_xref="CDD:201396"
gene complement(198999..200054)
/gene="hemE"
/locus_tag="Cpha266_0174"
/db_xref="GeneID:4568471"
CDS complement(198999..200054)
/gene="hemE"
/locus_tag="Cpha266_0174"
/EC_number="4.1.1.37"
/note="catalyzes the formation of coproporphyrinogen from
uroporphyrinogen III"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="YP_910665.1"
/db_xref="GI:119356021"
/db_xref="InterPro:IPR000257"
/db_xref="InterPro:IPR006361"
/db_xref="GeneID:4568471"
/translation="MLKNDLFLRALKRQPCSRTPIWVMRQAGRYLPEYRAVREKTDFL
TLCKTPELAAEVTIQPVDLMGVDAAIIFSDILVVNEAMGMDVEIIESKGIRLSPAIRS
QVDIDRLIIPDINEKLGYVMDAIRLTKKELDNRVPLIGFSGAAWTLFTYAVEGGGSKN
YAFAKKMMYREPKMAHMLLSKISSVITEYVLMQIEAGADAIQIFDSWASALSEDDYRE
FALPYIKENVQAIKTKYPDTPVIVFSKDCNTILSEIADTGCDAMGLGWNMDIAKARKE
LNDRVCIQGNMDPTVLYGTPDKIRSEAAKILKQFGQHTATSGHVFNLGHGILPDVDPA
NLKLLVEFVKEESVKYH"
misc_feature complement(199020..200036)
/gene="hemE"
/locus_tag="Cpha266_0174"
/note="methylcobalamin:coenzyme M methyltransferase;
Validated; Region: PRK06252"
/db_xref="CDD:180490"
misc_feature complement(199020..200033)
/gene="hemE"
/locus_tag="Cpha266_0174"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:48141"
misc_feature complement(order(199080..199082,199326..199328,
199434..199439,199443..199445,199584..199586,
199602..199604,199632..199634,199776..199778,
199791..199793,199827..199847,199926..199928,
199941..199943,199953..199955,199968..199985))
/gene="hemE"
/locus_tag="Cpha266_0174"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48141"
misc_feature complement(order(199080..199082,199437..199439,
199602..199604,199833..199835,199968..199970,
199980..199982))
/gene="hemE"
/locus_tag="Cpha266_0174"
/note="active site"
/db_xref="CDD:48141"
gene complement(200220..201068)
/locus_tag="Cpha266_0175"
/db_xref="GeneID:4570556"
CDS complement(200220..201068)
/locus_tag="Cpha266_0175"
/EC_number="1.3.5.1"
/note="PFAM: protein of unknown function DUF224,
cysteine-rich region domain protein;
KEGG: plt:Plut_1993 succinate/fumarate oxidoreductase,
putative"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase subunit C"
/protein_id="YP_910666.1"
/db_xref="GI:119356022"
/db_xref="InterPro:IPR000173"
/db_xref="InterPro:IPR004017"
/db_xref="GeneID:4570556"
/translation="MKRYAYYLSCINESMTKELDRSIDLWQKDLDLELIKLHESTCCG
GSNLEYVSPKHFALVNARNIAHAEKLGLDLVVSCNTCLMTIRTAKKKLDSSAELKCEV
NEILKKEGLEYKGTSEVRHLLWILIEDVGLDVIKSKVKVPLKNYKIAPFYGCHILRPS
TVLGKDNPLDPSSLDQLIEALGGTTIPYEHKNRCCGFHTLLVAEEESLNVAAEALNEA
IESKADFIVTPCPLCHTVLDGYQAKALKQAHINASIPVFHLSEMVGLALGYTKKQLGI
KRHIVS"
misc_feature complement(200223..201065)
/locus_tag="Cpha266_0175"
/note="Heterodisulfide reductase, subunit B [Energy
production and conversion]; Region: HdrB; COG2048"
/db_xref="CDD:32231"
misc_feature complement(200811..201059)
/locus_tag="Cpha266_0175"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature complement(200355..200627)
/locus_tag="Cpha266_0175"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature complement(<200265..200438)
/locus_tag="Cpha266_0175"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene complement(201087..202157)
/locus_tag="Cpha266_0176"
/db_xref="GeneID:4570557"
CDS complement(201087..202157)
/locus_tag="Cpha266_0176"
/EC_number="1.3.5.1"
/note="KEGG: plt:Plut_1994 succinate
dehydrogenase/fumarate reductase iron-sulfur protein;
TIGRFAM: succinate dehydrogenase and fumarate reductase
iron-sulfur protein;
PFAM: ferredoxin"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase subunit B"
/protein_id="YP_910667.1"
/db_xref="GI:119356023"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR004489"
/db_xref="InterPro:IPR006058"
/db_xref="GeneID:4570557"
/translation="MNSRKEPINSMHMTGAAEQHKEEKRDITFRVFRFNPQVDIKPYF
DDYTIPVERGITVLRALNYIKEHVDPTVSYRAFCQAGICGSCGMRVNGISKLACTTQV
WDELDRCKEPGILRVEPLRNMPPIKDLIVDMDPLVDKMKHYMNWVDSSMPESEMGKKE
FLVSEDEFLKYDKATDCILCASCVSECTILRAHKEYVSPAVLLKSYRMNVDSRDSIHD
TRLAELVKDHGVWDCTHCYRCQETCVKSIPIMDAIHGIRENALEVRGTKDTSGAKHAE
AFMDDIAKKGKLVEATLPFRTNGVLWTLQNLLPMAVKMIMKRRTPPPPPMVKPSKGIK
AFREEFREMTEHVKDDHQTHNK"
misc_feature complement(201372..202079)
/locus_tag="Cpha266_0176"
/note="Succinate dehydrogenase/fumarate reductase, Fe-S
protein subunit [Energy production and conversion];
Region: FrdB; COG0479"
/db_xref="CDD:30827"
misc_feature complement(<201885..202046)
/locus_tag="Cpha266_0176"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(201900..201911,201915..201917,
201924..201926,201933..201938))
/locus_tag="Cpha266_0176"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(201900..201902,201909..201911,
201924..201926))
/locus_tag="Cpha266_0176"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(202132..203835)
/locus_tag="Cpha266_0177"
/db_xref="GeneID:4570558"
CDS complement(202132..203835)
/locus_tag="Cpha266_0177"
/EC_number="1.3.5.1"
/note="KEGG: plt:Plut_1995 succinate dehydrogenase or
fumarate reductase, flavoprotein subunit;
TIGRFAM: succinate dehydrogenase or fumarate reductase,
flavoprotein subunit;
PFAM: fumarate reductase/succinate dehydrogenase
flavoprotein domain protein; HI0933 family protein; FAD
dependent oxidoreductase; FAD-dependent pyridine
nucleotide-disulphide oxidoreductase"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase subunit A"
/protein_id="YP_910668.1"
/db_xref="GI:119356024"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR003952"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR004112"
/db_xref="InterPro:IPR004792"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR013027"
/db_xref="InterPro:IPR014006"
/db_xref="GeneID:4570558"
/translation="MKPFDIVIVGGGGAGLYAAMEAMKTNPSLNIAVLSKVYPNRSHT
SAAQGGANAALANKAKDDTVEMHIFDTIKGSDYLADQDAVDILCSEAPKIIRELDNIG
TPWSRLDDNTIAQRPFGGAGRPRCCYCADKTGHTILQTLYEQCLKKGVFFFNEYFSLS
LSVNNSRMRGLLAINMKTGKIEAFPAKTVIFATGGYAKMYWNRSSNAAGNTGDGQAIA
YRAGIPLKDMEFVQFHPTGLRKSGLLVTEGARGEGGYLVNKDGERFMSRYAPEKMELG
PRDLVSRSIETEILQGRGFDSPAGKYIHLDLTHLGAELIKSRLPQIREMSMNFEGVDP
IEEPIPVRPTAHYSMGGIDTDNYGRTVMDGVYAAGECACVSVHGANRLGGNSLLDILV
FGRIAGHTAAEEAGKFEPGNISPEEIKAKDEELRSFMQSSGHYERYGALREELGQTLA
LNVGIYREASKISRGMEDLSLLKDRFKKIRVFDSSDIFNTNLIQVLELQNMLDLAETV
ATGALAREESRGSHTRNDFPTRNDEKWHKHTLATLENGTVKLGQKPVTMGRYELQERT
Y"
misc_feature complement(202645..203823)
/locus_tag="Cpha266_0177"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(202135..203748)
/locus_tag="Cpha266_0177"
/note="succinate dehydrogenase or fumarate reductase,
flavoprotein subunitGram-negative/mitochondrial subgroup;
Region: sdhA_frdA_Gneg; TIGR01812"
/db_xref="CDD:211688"
misc_feature complement(202135..202512)
/locus_tag="Cpha266_0177"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene complement(203961..204407)
/locus_tag="Cpha266_0178"
/db_xref="GeneID:4570559"
CDS complement(203961..204407)
/locus_tag="Cpha266_0178"
/note="PFAM: CBS domain containing protein;
KEGG: cte:CT2044 CBS domain protein"
/codon_start=1
/transl_table=11
/product="signal-transduction protein"
/protein_id="YP_910669.1"
/db_xref="GI:119356025"
/db_xref="InterPro:IPR000644"
/db_xref="GeneID:4570559"
/translation="MHQLITLRTLPVSDLMQKDYHTIKGSCTVAEALQLMKRTKESGL
IVEPRNEDDCYGIVTEKDILEKVIDPGEDVHRDPWNTPIFQIMSKPIISVNPSLRIKY
ALRLMKRTNVRRLTVMENNKVIGVLNMTDVLHAVEELPIHDDNIAL"
misc_feature complement(204009..204374)
/locus_tag="Cpha266_0178"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature complement(204003..204356)
/locus_tag="Cpha266_0178"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair_17; cd04630"
/db_xref="CDD:73128"
gene complement(204591..205232)
/locus_tag="Cpha266_0179"
/db_xref="GeneID:4570560"
CDS complement(204591..205232)
/locus_tag="Cpha266_0179"
/note="PFAM: beta-lactamase domain protein;
KEGG: plt:Plut_1997 hydroxyacylglutathione hydrolase,
putative"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_910670.1"
/db_xref="GI:119356026"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4570560"
/translation="MIIKQFRTGGDRNLGYLAADEVSGDALVVDASYNPGMIYNFACE
HGLTIRYLFSTHGHSDHTNGNATTSQLTGLKPLLYGDTCPETGISVRAGARFPLGSGS
VLIIHTPGHTEDSICLHVGDALFTGDTLFTGKVGGTMTAEQALAEYDSLRNKLMRLPD
ETRVFPGHDYGSSPASTIAEEKKSNPFLLQPDFRSFLALKQNWAAYKKEHGIA"
misc_feature complement(204666..205232)
/locus_tag="Cpha266_0179"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature complement(204669..205196)
/locus_tag="Cpha266_0179"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:207049"
gene complement(205257..205565)
/locus_tag="Cpha266_0180"
/db_xref="GeneID:4570561"
CDS complement(205257..205565)
/locus_tag="Cpha266_0180"
/note="KEGG: plt:Plut_1998 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910671.1"
/db_xref="GI:119356027"
/db_xref="GeneID:4570561"
/translation="MKFLAIMGHEETRPMVRNLFKEYQVNLFSNVAIRGCNCQKPALM
EQSWWPADEMIGTYSSLCFAILDDDKAEAIMLELEKNPIAVDKDFPARAFLMHVEKTA
"
gene complement(205588..208794)
/locus_tag="Cpha266_0181"
/db_xref="GeneID:4570562"
CDS complement(205588..208794)
/locus_tag="Cpha266_0181"
/note="PFAM: acriflavin resistance protein;
KEGG: cch:Cag_0123 AcrB/AcrD/AcrF family protein"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_910672.1"
/db_xref="GI:119356028"
/db_xref="InterPro:IPR001036"
/db_xref="GeneID:4570562"
/translation="MNEGIAGKLAKQFINSKITPLLMIASLLVGVMATFMTPREEEPQ
IVVPLVDLYIPYPGATPSEVEERVAKPVERALTEIPGVDFVYSTSMPDVALVTVRYKV
GEDTEQSMVKLWSVLMKNMDKMPAGAQFPLIKKVAIDDVPVLNLTFWSKTKDPYQLRQ
TVAAVGDELKQIESIGDVEIKGGLKRQVRVVLNKEKLSQFNISALQIARQIQQSNSQM
TAGDFKQMNNEIIVRSGRFLESADDVRGIVVGIYGASPVYLRDVSEVIDGPEEVNNYT
FFGWGAAGPKNAATGEYPAVTLTVAKRKGTDATVLANKVMTKVEGLKKTTIPSDITVT
ETRNYGETASEKVFTLLEHLIMAVVAVTIVVGFFLGWRGALVVFASVPITFALTLLIY
YLLDYSLNRVTLFALIFVTGIVVDDSIIIAENIHRHFAMKRQPRLQAAITAISEVGNP
TILATFTVIAAVLPMVFVSGLMGPYMSPMPIGASLAMVFSLLVALIATPWLSYRLLKT
EEGHHEEYDITKTGYYKLFNSILSPFIESKLKTWLAFGGVAILLIGAIALVPLKAVQM
KMLPFDNKNEFQVIVDMPEGTALEQTARVTKEISAYLKTVPEVSSYQYYVGTNAPINF
NGLVRHYYLRQADNMGDIQVNLIHKGERSLQSHDIAKKVRSAVQNIALKYNGNAKIVE
IPPGPPVLSTLVAEIYGPSQKEQIALAGEVKKIFSQTPGVVDVDWLVEDDQRVYDLEV
NKEQAAFRGVSAEQIAQTLRMSLHGVEVGLLHTRKSIEPVTIQLRLPQNQRTSIQDLS
GIFVQSQGMGSLTTRLRAGEMIPLSSLVTIKEKIQDKSIYRKDLRQVVYVTADVAGAT
ESPVYAMLAMDKKIEQLKLPGGYSISPLYTSAPTSQAKSSMKWDGEWQITFEVFRDLG
TAFAVVLVIIYLLIIGWFQSFKTPLIMMIAIPLSLVGIIPGHWIHGAFFTATSMIGMI
ALAGIMVRNSVLLIDFIQIRREEGVDLKQAVIESAAVRTRPIILTSGAVVIGSLVMLF
DPIFQGLAISLIWGGVLSTILTLVVVPLVYYMAEKKSH"
misc_feature complement(205597..208773)
/locus_tag="Cpha266_0181"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
misc_feature complement(207322..>207735)
/locus_tag="Cpha266_0181"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:199094"
gene complement(208787..209203)
/locus_tag="Cpha266_0182"
/db_xref="GeneID:4570563"
CDS complement(208787..209203)
/locus_tag="Cpha266_0182"
/note="KEGG: plt:Plut_2000 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910673.1"
/db_xref="GI:119356029"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4570563"
/translation="MKGQNNSVAFIAVLITLLAGCGKGEQHTNNAKTKPDQALSLPLF
QTESTLNARGEEVILVPKSSVFQQGGLTGVFVVGDDQKATIRWIRTGRIDHGSVVVLG
GIDKGEMVIANYNPELKEGVSVTKSQAVTREATSNE"
misc_feature complement(208829..>209041)
/locus_tag="Cpha266_0182"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
gene complement(209243..210568)
/locus_tag="Cpha266_0183"
/db_xref="GeneID:4570564"
CDS complement(209243..210568)
/locus_tag="Cpha266_0183"
/note="PFAM: outer membrane efflux protein;
KEGG: cch:Cag_0122 LipD protein, putative"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_910674.1"
/db_xref="GI:119356030"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:4570564"
/translation="MKVYKTLIGIMLAGSIALPGCVQAAEKTIKLSLGEAVSMARENN
RTIKAAQSRVAQAEAKIVQTRQSYLPKVTLSETAVITNDPGAALVFKLQQNIITQSDF
IPDRLNNADVINDFNTSLLVMQPVYNPDASTGRTIAFTAKKAQEQMAARTTETVELQV
SKLYYGLILARKNIEAVEQSIITMKNHSNEADKAYRVGLLTKSDKLSTDVRLAELLEQ
KLMLHDAIKNATDALKVMLNLDANLTIIPTEDLVVDKRLPVVDEKNTPEGRSDLKALQ
TYREIAGYQEKMAQAAKLPRVNAFFQTNLHSSDIFSGGSSWALGMTMQWNIYDGMATT
GRIQEAKAQQLEAMYNHEEAKSQSLVEIKKAQRDLKTAKARIAVSQESLEEARVSLDY
IGTQFKTGMAMTFELLMREGAYTYAKLRLNQAKYDYCIARSELAYYSAR"
sig_peptide complement(210494..210568)
/locus_tag="Cpha266_0183"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 1.000 at
residue 25"
misc_feature complement(209252..210481)
/locus_tag="Cpha266_0183"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:162556"
gene complement(210575..210850)
/locus_tag="Cpha266_0184"
/db_xref="GeneID:4570565"
CDS complement(210575..210850)
/locus_tag="Cpha266_0184"
/note="KEGG: plt:Plut_2002 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910675.1"
/db_xref="GI:119356031"
/db_xref="GeneID:4570565"
/translation="MLVCCQEILQLDDKDMDDVILRLKKVNGQIQGLIRMVENSDNCE
KVIVQFQAAKAALDKTYSLVLDRSLKECMSHNDTENVGRILKLISKH"
misc_feature complement(210581..210805)
/locus_tag="Cpha266_0184"
/note="Transcriptional regulators CsoR (copper-sensitive
operon repressor), RcnR, and FrmR, and related domains;
this domain superfamily was previously known as DUF156;
Region: CsoR-like_DUF156; cd10148"
/db_xref="CDD:197385"
misc_feature complement(order(210584..210613,210617..210622,
210632..210634,210641..210649,210653..210661,
210665..210670,210677..210682,210689..210694,
210698..210703,210707..210715,210719..210727,
210731..210742,210749..210754,210758..210763,
210770..210772,210779..210784,210791..210796,
210803..210805))
/locus_tag="Cpha266_0184"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197385"
misc_feature complement(order(210584..210595,210602..210604,
210647..210649,210659..210661,210668..210670,
210677..210682,210689..210694,210698..210703,
210707..210715,210719..210727,210731..210742,
210749..210754,210758..210763,210770..210772,
210779..210784,210791..210796,210803..210805))
/locus_tag="Cpha266_0184"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197385"
misc_feature complement(order(210602..210604,210647..210649,
210725..210727))
/locus_tag="Cpha266_0184"
/note="putative allosteric switch controlling residues;
other site"
/db_xref="CDD:197385"
misc_feature complement(order(210635..210637,210647..210649,
210722..210724))
/locus_tag="Cpha266_0184"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197385"
misc_feature complement(order(210596..210601,210605..210613,
210617..210622,210632..210637,210641..210646,
210653..210658,210665..210667))
/locus_tag="Cpha266_0184"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197385"
gene complement(210923..211795)
/locus_tag="Cpha266_0185"
/db_xref="GeneID:4570566"
CDS complement(210923..211795)
/locus_tag="Cpha266_0185"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: cch:Cag_0591 proline iminopeptidase, putative"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_910676.1"
/db_xref="GI:119356032"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR003089"
/db_xref="InterPro:IPR008262"
/db_xref="GeneID:4570566"
/translation="MSFADTTRGKIYYEDTGWGVSDNREVVLFFNGWSISARYWIPVI
DRLSSQYRCLSFDQSGTGRTVCSHSCLSFSVEGFADEASELLVHLGLLGSRKLHIVGH
SMGGMIATEICNRHPESLVSATIVNCGIFDDELLKSFHHVLVGGMIDVAMLFKGVFLL
EPFKSLFIDRAIGRPIDQKYRTVFVEDFVASDTRAATAVGKFAIDPEIIGKYTAEAVK
IGAPLLCVVGMADRTIPPEGMQTLYNRRIEQSDFLTRLARFDHAGHLPMLEVLPEFEQ
ALRNHFYAASKLLG"
misc_feature complement(210989..211717)
/locus_tag="Cpha266_0185"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
misc_feature complement(<211238..>211513)
/locus_tag="Cpha266_0185"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(211792..212448)
/locus_tag="Cpha266_0186"
/db_xref="GeneID:4570567"
CDS complement(211792..212448)
/locus_tag="Cpha266_0186"
/note="PFAM: Isoprenylcysteine carboxyl methyltransferase;
KEGG: mac:MA2698 hypothetical protein"
/codon_start=1
/transl_table=11
/product="isoprenylcysteine carboxyl methyltransferase"
/protein_id="YP_910677.1"
/db_xref="GI:119356033"
/db_xref="InterPro:IPR007269"
/db_xref="GeneID:4570567"
/translation="MAMHDELPFRIIFAGIYVAGFLMRGLFIQRMKPQEKPIIPEAGN
AGEISRFRVIFQKVMFFLWIAIVASYTWYPPWVEALHFPFPTWLRYGGAIAAAVSFLF
LFLTMKTLGRYWSPLPRLMEGHKLVITGPYRFIRHPMYTAMMLLFIAFILITANAAVT
VFSLIATVLTVKWALNEEKMLIGFFGDEYRAYMTRTGAFLPAPRKMVRHIFFNQHEKL
"
misc_feature complement(211846..>212259)
/locus_tag="Cpha266_0186"
/note="Putative protein-S-isoprenylcysteine
methyltransferase [Posttranslational modification, protein
turnover, chaperones]; Region: STE14; COG2020"
/db_xref="CDD:32203"
gene 212717..213394
/locus_tag="Cpha266_0187"
/db_xref="GeneID:4570568"
CDS 212717..213394
/locus_tag="Cpha266_0187"
/note="KEGG: cte:CT2051 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910678.1"
/db_xref="GI:119356034"
/db_xref="GeneID:4570568"
/translation="MKKEHATISGRKKRFCVIMEVVGKSKALVVLESCLQESTVYFSN
HEKILKCNPYCRYVRYIPDFDVFQWTFEVDDPRNNPIVAIFFVRQTEEHIPTDSAVFR
RYVGESRAPIDTETPGKKIIWETVESAPELLFNNDHTFIGKTFSEIFLLHQTDNRTTV
HFETNISLDFKLSFPLNLMPEPALKFMSDMIMSKIMQQATESMLCQVQSDICCSMPEI
ATEGGKK"
gene 213535..214821
/locus_tag="Cpha266_0188"
/db_xref="GeneID:4570569"
CDS 213535..214821
/locus_tag="Cpha266_0188"
/note="PFAM: coenzyme F420 hydrogenase/dehydrogenase beta
subunit domain protein;
KEGG: ter:Tery_0742 coenzyme F420
hydrogenase/dehydrogenase beta subunit-like"
/codon_start=1
/transl_table=11
/product="coenzyme F420 hydrogenase/dehydrogenase subunit
beta"
/protein_id="YP_910679.1"
/db_xref="GI:119356035"
/db_xref="InterPro:IPR007516"
/db_xref="InterPro:IPR007525"
/db_xref="GeneID:4570569"
/translation="MQHSVVSLKTSSLPMTKPSKIQTPRFDEPLCSKCGLCMGNAWPV
KESLESCVFRCGWVENHEKRIFGRVRNPDDSDELRFGISLKRFNATLKKPVNGAQWSG
IITRISTMALQTNLVDAVLTLHGEPLQPKAVLAKTAQDIHEARGNKPVLSPVLQALHT
AYREKTRRLLVVGAACHVHMVRDFTRKSPYFADLDLYIVGIPCTDNLEPSHLQWVFRN
ISKNPETVINFEFMQDYRVHILHKAGKVEKIPFFCLPSAVMKVGVFPNSCLSCFDYIN
SLSDITVGYLGAPYSKNRKTQWIIVRTERGEKLLDLINDEIETSPEVFFGDSHSAVQA
ALQPTLMPILQPEKLDDRKAMPKWLGIYLSRKKAKSGPGGTEFAKYSIDIHAIRNFYF
LKMYRPDDIGIVPTHIYDLLSQYDLSSIQRIIEARI"
misc_feature 213799..214008
/locus_tag="Cpha266_0188"
/note="Coenzyme F420 hydrogenase/dehydrogenase, beta
subunit N-term; Region: FrhB_FdhB_N; pfam04422"
/db_xref="CDD:190981"
misc_feature 214027..214503
/locus_tag="Cpha266_0188"
/note="Coenzyme F420 hydrogenase/dehydrogenase, beta
subunit C terminus; Region: FrhB_FdhB_C; pfam04432"
/db_xref="CDD:190987"
gene 214842..215615
/locus_tag="Cpha266_0189"
/db_xref="GeneID:4570570"
CDS 214842..215615
/locus_tag="Cpha266_0189"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: ath:At4g13250 short-chain dehydrogenase/reductase
(SDR) family protein"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_910680.1"
/db_xref="GI:119356036"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="GeneID:4570570"
/translation="MKNIVITGSSRGIGLGLAHAFLSKGCRVMISSSNSSNLDKALNE
LVEQHGSEHISAKTCDVANYQEVQDLWDHAQKSIGQVDIWINNAGIAHPLLPFWKLDM
TQIGHTLDVNLAGTINGSHVAIRGMIEQGSGYLYNLEGQGADGGIIHGMGVFGTSKAA
VHYFSKSLIEETRSLKIKVGTIIPGIIRTELQAKTSQQTDAGRLFLSLLGENVREATE
DLAKRILANNTHGVCINRMTTPDMIGKIATLPINFLLGR"
misc_feature 214845..215558
/locus_tag="Cpha266_0189"
/note="Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only]; Region:
COG4221"
/db_xref="CDD:33946"
misc_feature 214851..215453
/locus_tag="Cpha266_0189"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(214863..214865,214869..214880,214935..214943,
215016..215024,215100..215108,215172..215174,
215253..215261,215301..215303,215313..215315,
215391..215402,215406..215411)
/locus_tag="Cpha266_0189"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(215175..215177,215259..215261,215301..215303,
215313..215315)
/locus_tag="Cpha266_0189"
/note="active site"
/db_xref="CDD:212491"
gene complement(215789..216013)
/locus_tag="Cpha266_0190"
/db_xref="GeneID:4570571"
CDS complement(215789..216013)
/locus_tag="Cpha266_0190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910681.1"
/db_xref="GI:119356037"
/db_xref="GeneID:4570571"
/translation="MPQLPQNIIPEELTKPAAAIVSGAFLLSPLGIPPFIRGIPRVLL
AGAGGFLAGAVAEKVIENIGQILPPQPEDD"
gene complement(216052..216417)
/locus_tag="Cpha266_0191"
/db_xref="GeneID:4570572"
CDS complement(216052..216417)
/locus_tag="Cpha266_0191"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910682.1"
/db_xref="GI:119356038"
/db_xref="GeneID:4570572"
/translation="MANESRKGGFFSVFRKEEKSVANKSAITSQQSETKAASSEKPAV
SVSREMTPKPVANVKPAATAEQQEKPVVFEAIDTTAAFSACWKAFGDLGLSQIKTVDM
VLTMLSNSIAKITDGQQTK"
gene complement(216448..217989)
/locus_tag="Cpha266_0192"
/db_xref="GeneID:4570573"
CDS complement(216448..217989)
/locus_tag="Cpha266_0192"
/note="KEGG: plt:Plut_1700 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910683.1"
/db_xref="GI:119356039"
/db_xref="GeneID:4570573"
/translation="MIADKVQTLYPRVSEYFGKIRNGNRYLEHILEVDSFWKNFEHSP
CRKVVLQGSEMPADACVSDEYDLVYAGGSLGLLHASVMASKYARKVLVFDRHMSGKPS
RDWNISWNELEKLEQVGLFSYEEINASIACRYKTGWAEFYVENGRKKRLYIDNVLDCA
VESDQLLSIARQKILADECNRIVDKMTFMRCFQFPESVVIEVENNMHERVYFRAKVFV
DAMGVHSPVAMQLNDGASFTHLCPTVGTVSSGLENVDPDIGEILVSTEPADTSSGRGR
QLIWEGFPAGGDRYTTYLFFYDSRSSDNDKSLLGLFETYFLKLPSYKKPGKDFVVHRP
VYGVIPAYYHDGFERTRQVADNNILMLGDAAALGSPLTFCGFGSFVRNLKSLTEGLEK
ALACNSFEKKNLEQISAYEPNVAAMANLMKFMCYNKYTDHPNFVNELMNEVMIVLDGL
PPRYREAMFKDTLELSDLLLIGLNVAWKYPGVLMATATKLGLEGSLGMMKNMIGWAMS
SKASN"
misc_feature complement(216595..217803)
/locus_tag="Cpha266_0192"
/note="2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme metabolism
/ Energy production and conversion]; Region: UbiH;
COG0654"
/db_xref="CDD:30999"
gene 218179..218400
/locus_tag="Cpha266_0193"
/db_xref="GeneID:4570574"
CDS 218179..218400
/locus_tag="Cpha266_0193"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910684.1"
/db_xref="GI:119356040"
/db_xref="GeneID:4570574"
/translation="MSQDSAKLFLAQMKQDKELSDKIHNAATKEDRWTIIRQEGFDFT
REELDHATVTELNHFERWNWEAKLLADWL"
misc_feature 218179..218322
/locus_tag="Cpha266_0193"
/note="Nitrogen fixation protein of unknown function;
Region: Nif11; pfam07862"
/db_xref="CDD:203784"
gene complement(218428..219309)
/locus_tag="Cpha266_0194"
/db_xref="GeneID:4570575"
CDS complement(218428..219309)
/locus_tag="Cpha266_0194"
/EC_number="4.1.2.13"
/note="PFAM: deoxyribose-phosphate
aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase;
KEGG: cch:Cag_1641 hypothetical protein"
/codon_start=1
/transl_table=11
/product="aldolase"
/protein_id="YP_910685.1"
/db_xref="GI:119356041"
/db_xref="InterPro:IPR002915"
/db_xref="GeneID:4570575"
/translation="MAEYDKDKQAKEYYTDVPVEKHGFFLKGAHSLDWGMKNRLSRIF
RPDTGRTVMFAIDHGYFQGPTTGLERPDVNIVPLMSHADAIMLTRGMLRTTVPPSLTR
AVVMRCSGGPSILKELSDEELAVDIEDAIRMNVAAITLQIFIGGEFETRSIHNMTRLI
DMGLRYGIPTMAVTAVGKDMVRDAKYFRLACRIAAELGAQIVKTYYVPEDFETVVASC
PVPIVMAGGKKISELEAVTMSYQAIQEGAAGVDMGRNIFQSDAPLAMMKTVGKVVHEN
MPPAEAYEYFQSIRREG"
misc_feature complement(218467..219216)
/locus_tag="Cpha266_0194"
/note="DhnA-type fructose-1,6-bisphosphate aldolase and
related enzymes [Carbohydrate transport and metabolism];
Region: FbaB; COG1830"
/db_xref="CDD:32015"
misc_feature complement(218488..219159)
/locus_tag="Cpha266_0194"
/note="Class I fructose-1,6-bisphosphate (FBP) aldolases
of the archaeal type (DhnA homologs); Region: DhnA;
cd00958"
/db_xref="CDD:188645"
misc_feature complement(order(218515..218523,218581..218589,
218650..218652,218659..218661))
/locus_tag="Cpha266_0194"
/note="putative active site; other site"
/db_xref="CDD:188645"
misc_feature complement(218659..218661)
/locus_tag="Cpha266_0194"
/note="catalytic residue [active]"
/db_xref="CDD:188645"
gene complement(219381..221498)
/locus_tag="Cpha266_0195"
/db_xref="GeneID:4570576"
CDS complement(219381..221498)
/locus_tag="Cpha266_0195"
/note="PFAM: class II aldolase/adducin family protein;
short-chain dehydrogenase/reductase SDR; KR;
KEGG: plt:Plut_0410 short chain dehydrogenase"
/codon_start=1
/transl_table=11
/product="short chain dehydrogenase"
/protein_id="YP_910686.1"
/db_xref="GI:119356042"
/db_xref="InterPro:IPR001303"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:4570576"
/translation="MQNLWNDAELQRSVNGQRSANDIPVELAELVYASRLLGSESTLV
MHGGGNTSVKSELHDIIGYRVNVIFIKGSGVNLAGVDAHDFMPVRIEPLQKLQHLYAT
GGRSSEEDIQQFSTQRFKNFLYLNLFYLTEHMVNHSLSPSIETLLHAFLPHRFIFHTH
STALLTLSNQPDGQDLCREVLGESFGMVPYIKPGLGLARSAATAYESAPSIRGLVLQK
HGLVTFADTPDEAYHCMIESANLLEERITRAGRKVFPSVSLPAGIASLEDTAPVIRGA
VVEEIMPGSRDYRQFVLEFRTSPDILAYVNSDSLSDVSQRGAMTPDFIIRTKNRPLIV
PTPDASDLDAFKTAVHEAVERYDAEYRAYFQRRRQAAGIEVSMLDPLPRVVLVPGLGL
FGLGRTAREAAVNADIAESTASAILDAESVGRFESITEQEVFDIEYWEMEQAKMTKVR
HDVFAGKVALVTGAASGIGLATARAFRQRGAELVILDLNPEALQQAAEELGGGVLPIA
CDVTDRAAVRRAFDKVCRRYGGLDILVSNVGVALQGRIGDVPDEVLRRSFELNFFSHQ
SIAQEAVRIMRLQGTGGVLLFNVSKQAVNPGPDFGPYGLPKAATMFLVRQYALDHGRD
GIRANGINADRIRTGLLTDEMIKIRSTARGLNEREYMAGNLLQVEVTAEDVAEAFVHQ
ALETKTTGSIVTVDGGNIAAALR"
misc_feature complement(219384..221498)
/locus_tag="Cpha266_0195"
/note="short chain dehydrogenase; Validated; Region:
PRK08324"
/db_xref="CDD:181389"
misc_feature complement(220788..221408)
/locus_tag="Cpha266_0195"
/note="Class II Aldolase and Adducin N-terminal domain;
Region: Aldolase_II; smart01007"
/db_xref="CDD:198075"
misc_feature complement(order(220842..220844,221019..221021,
221025..221027,221067..221075))
/locus_tag="Cpha266_0195"
/note="active site"
/db_xref="CDD:29521"
misc_feature complement(order(220842..220844,221019..221021,
221025..221027))
/locus_tag="Cpha266_0195"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
misc_feature complement(order(220812..220814,220845..220847,
220929..220931,220971..220976,220980..220982,
220989..220997,221010..221015,221019..221021))
/locus_tag="Cpha266_0195"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature complement(219405..220139)
/locus_tag="Cpha266_0195"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(order(219591..219602,219678..219680,
219690..219692,219729..219737,219882..219890,
220032..220040,220095..220097,220101..220106,
220110..220112))
/locus_tag="Cpha266_0195"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(219678..219680,219690..219692,
219729..219731,219816..219818))
/locus_tag="Cpha266_0195"
/note="active site"
/db_xref="CDD:187535"
gene complement(221628..222833)
/locus_tag="Cpha266_0196"
/db_xref="GeneID:4570577"
CDS complement(221628..222833)
/locus_tag="Cpha266_0196"
/note="KEGG: rpa:RPA2614 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910687.1"
/db_xref="GI:119356043"
/db_xref="GeneID:4570577"
/translation="MSTKRIITKEDVHLKARLLSEGAKVTVNKPPKTGFNPFRAMVLN
GSDLATLVRPEPYTRLEVQVNGDDVEFYDCGKHLASGRMQEWFSWRDGTLSNGRPVNA
AVIGMNQDIINIHYSYSCDNNNTGRSCRFCFFFADQHVSVGQDLAKMPFQKIEALAKE
QAEAVKIATDNGWRGTLVVIGGLVAPERRSQVVDLVEIVMAPLREQLSPEVFNELHIT
ANLYPPDDFKDMERWKASGINSTEFDLEVTDPDYFKAICPGKCATYPLEYWHAAQDAS
VEIFGPGRGTTSFILMGLEPMNCMLEGVEERLSKGVYPNMLVYQPVPGADMFRMPPPN
ADWLVEASEKLADLYFKYQDRFDMPLATDHRPGYTRMGRSQYIMLTADVIARRLYEQG
YELPAAYPV"
misc_feature complement(221814..222503)
/locus_tag="Cpha266_0196"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:197846"
gene complement(222922..223140)
/locus_tag="Cpha266_0197"
/db_xref="GeneID:4570578"
CDS complement(222922..223140)
/locus_tag="Cpha266_0197"
/note="KEGG: cch:Cag_1643 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910688.1"
/db_xref="GI:119356044"
/db_xref="GeneID:4570578"
/translation="MLKGSFTELWNKAMIYTGSGWLVLVCMIWLSGHFRDSGEQIVFV
SVLAAGYVAVYVLGFYIKHRHSEKTAKL"
gene complement(223223..223699)
/locus_tag="Cpha266_0198"
/db_xref="GeneID:4570579"
CDS complement(223223..223699)
/locus_tag="Cpha266_0198"
/note="PFAM: 2-vinyl bacteriochlorophyllide hydratase;
KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide
hydratase"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate synthase subunit,
2-oxoacid-ferredoxin oxidoreductase subunit CD"
/protein_id="YP_910689.1"
/db_xref="GI:119356045"
/db_xref="InterPro:IPR009905"
/db_xref="GeneID:4570579"
/translation="MPRYTPEQLAQRNTTVWTDVQLILAPIQFVFFLIGVGVTYLHYI
NPDIIAFFWVDVAILFKSFLFALLFFTGAYFEKEIFDKWIFSREFLWEDIGSVTAGAF
HILYFILAFTGASREVLVWEAFLAYFTYIANAMQYIVRILLEKRNEKILRNSNALS"
misc_feature complement(223268..223690)
/locus_tag="Cpha266_0198"
/note="2-vinyl bacteriochlorophyllide hydratase (BCHF);
Region: BCHF; pfam07284"
/db_xref="CDD:148725"
gene complement(224260..224598)
/locus_tag="Cpha266_0199"
/db_xref="GeneID:4570580"
CDS complement(224260..224598)
/locus_tag="Cpha266_0199"
/note="KEGG: pol:Bpro_4964 transposase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910690.1"
/db_xref="GI:119356046"
/db_xref="GeneID:4570580"
/translation="MWLSHLYIHPPERNPNKEYRRKAGSKSKPTQSRNIFECIMLTVQ
RTGCQDQANLKEQFGMPFATYTHFARRQRKGFFAKHESSYDESSACTRYWWMKSNRQR
KKTAQSAIYL"
gene 224962..226368
/locus_tag="Cpha266_0200"
/db_xref="GeneID:4570581"
CDS 224962..226368
/locus_tag="Cpha266_0200"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB"
/codon_start=1
/transl_table=11
/product="radical SAM domain-containing protein"
/protein_id="YP_910691.1"
/db_xref="GI:119356047"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4570581"
/translation="MCSVRVIKKLNIMPLRLLFIAPKGKKDSKTNQKPLFHMAIGVLV
SLTPDEHTIEIADEHFGDTINYDGDYDLVGITSRTIDATRAYEIADEFRRKGKKVILG
GLHVSFNPEEARSHADSIVSGEAENLWATVLEDASSGQLKPAYDSKDFPLVTKIVPLD
YERIARASKRGKVDGSKSIPIYITRGCPYECSFCVTPNFTGKLYRYQNPEDLVRQIET
AKKVFFKAKGKSSKPWFMLCDENLGINKKKLWENLALLKECNINYSVFFSMNFLEDKE
TVRRLVDSGCNMVLVGFESIKQSTLEAYNKGHVNSAEKFASVIEECRSAGLNIQGNFL
VNPALDTFEDMDDLVEFVGKNHVFMPIFQIITPYPGTKMYLEYKEKGLITDEDWEKYN
AINLVIRSEHYDPIAFQHKFMTSYYKTYSWGKIANRVRRNPYKFLNLITSLAFKKNLK
EQLETFERNHNIRTARTP"
misc_feature 225100..225381
/locus_tag="Cpha266_0200"
/note="B12 binding domain_like associated with radical SAM
domain. This domain shows similarity with B12
(adenosylcobamide) binding domains found in several
enzymes, such as glutamate mutase, methionine synthase and
methylmalonyl-CoA mutase, but it lacks the...; Region:
radical_SAM_B12_BD; cd02068"
/db_xref="CDD:30206"
misc_feature 225493..226122
/locus_tag="Cpha266_0200"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:197846"
gene complement(226551..227177)
/locus_tag="Cpha266_0201"
/db_xref="GeneID:4570582"
CDS complement(226551..227177)
/locus_tag="Cpha266_0201"
/note="PFAM: Proto-chlorophyllide reductase 57 kD subunit;
KEGG: plt:Plut_1486 hypothetical protein"
/codon_start=1
/transl_table=11
/product="proto-chlorophyllide reductase 57 kD subunit"
/protein_id="YP_910692.1"
/db_xref="GI:119356048"
/db_xref="InterPro:IPR013580"
/db_xref="GeneID:4570582"
/translation="MKAVILYDSKTKGGSTEMLIDSIGQQLAESGLYVEKAKCIATAD
YSFIKEFDIVILGAPVYNFIVSPQLLGAFLQGNLKKHLKKKRVALFLTCWTAESMAAV
FYLPQLKMHLLTNRILVEKIFHPVESSSDNAIESFVDDLLKQYERSIGSRNKSIIWSD
EAQDWLEVVPGFLREKIRSMAAEYAIMNGYKEITVEMLDIARHEIGEK"
misc_feature complement(<226887..227165)
/locus_tag="Cpha266_0201"
/note="NADPH-dependent FMN reductase; Region: FMN_red;
cl00438"
/db_xref="CDD:212217"
misc_feature complement(226572..226706)
/locus_tag="Cpha266_0201"
/note="Proto-chlorophyllide reductase 57 kD subunit;
Region: PCP_red; pfam08369"
/db_xref="CDD:203920"
gene 227469..227696
/locus_tag="Cpha266_0202"
/db_xref="GeneID:4570583"
CDS 227469..227696
/locus_tag="Cpha266_0202"
/note="KEGG: cch:Cag_0191 chlorosome envelope protein B"
/codon_start=1
/transl_table=11
/product="chlorosome envelope protein B"
/protein_id="YP_910693.1"
/db_xref="GI:119356049"
/db_xref="GeneID:4570583"
/translation="MSNGTSNDFSGAITNLMDTLGKLGQQQVEMLNNGIKTGSQMIEP
LGKTVTDLAGNMLNMVNQVLQSVSSALAPKK"
gene 227835..228842
/locus_tag="Cpha266_0203"
/db_xref="GeneID:4570584"
CDS 227835..228842
/locus_tag="Cpha266_0203"
/note="PFAM: aminoglycoside phosphotransferase;
KEGG: cte:CT2055 hypothetical protein"
/codon_start=1
/transl_table=11
/product="aminoglycoside phosphotransferase"
/protein_id="YP_910694.1"
/db_xref="GI:119356050"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:4570584"
/translation="MNTEHHIRCFYGQEDRNQLQITPIQGDASTRRYYRVSGPKGSAI
ACCDPLLRETTTDDYPFLIVYDLLRRNDIPVPEVIAVNAGEGLLLIEDCGTLQLQYLV
FPECGSLAADIYRDVIDTLAGIQAITGDSSQLPFRLSFDREKLMFEFDFFIEHALMGY
FAPVSGGVDVGALRSEFKAIADILVQPERFVLNHRDFHSRNIMIRDGKPVIIDFQDAR
MGLPQYDAVSIIRDSYVALDQTLADELKTRHYQALMDRNGITMSHDEYLYLFDLMAFQ
RNIKAIGTFSYQTAVLKKTQYEHSIAPALRYLPDYISGRNELKKAGRLLQPVIEQRHE
R"
misc_feature 227865..228758
/locus_tag="Cpha266_0203"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature 227895..228569
/locus_tag="Cpha266_0203"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
misc_feature order(228420..228422,228528..228530)
/locus_tag="Cpha266_0203"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:88612"
gene 228839..229774
/locus_tag="Cpha266_0204"
/db_xref="GeneID:4570585"
CDS 228839..229774
/locus_tag="Cpha266_0204"
/note="PFAM: Nucleotidyl transferase;
KEGG: plt:Plut_2007 mannose-1-phosphate
guanylyltransferase, putative"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_910695.1"
/db_xref="GI:119356051"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4570585"
/translation="MKAFVLAAGFGTRLRPFTHRIPKPLIPVLNLPALLYTFALLKDA
GITDIICNIHHHADDVRESVASFGIEGLAISFSEETTILGTGGGLKKCEQLFDDEDFL
LINSDIITDIDFSAFIRHHKLSGLPGTLALYETPEAMAIGCIGIENGQVKDFRNMRNT
GLKSSLIYTGTALLSPKIFRYLNEDFSSIVDTGFTGLIDHGGLGAFRHSGSWMDIGTP
EDYLDANNGKGMLPERLTRRVRDAIGIEPHRIAADAWIASGARVIRSVIGSRCMVSRN
AVVENSVLLPGAVVAEGECLLNSIRDRENTLQTIP"
misc_feature 228839..229630
/locus_tag="Cpha266_0204"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature 228842..229510
/locus_tag="Cpha266_0204"
/note="NTP_transferase_like_1 is a member of the
nucleotidyl transferase family; Region:
NTP_transferase_like_1; cd06422"
/db_xref="CDD:133044"
misc_feature order(228854..228862,228992..228994,229151..229153,
229157..229159)
/locus_tag="Cpha266_0204"
/note="Substrate binding site; other site"
/db_xref="CDD:133044"
misc_feature order(229157..229159,229478..229480,229484..229486)
/locus_tag="Cpha266_0204"
/note="metal-binding site"
/db_xref="CDD:133044"
misc_feature 229604..>229717
/locus_tag="Cpha266_0204"
/note="Glucose-1-phosphate adenylyltransferase, C-terminal
Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase. It
catalyzes the first committed and...; Region:
LbH_G1P_AT_C; cd04651"
/db_xref="CDD:100056"
gene 229800..230963
/locus_tag="Cpha266_0205"
/db_xref="GeneID:4570586"
CDS 229800..230963
/locus_tag="Cpha266_0205"
/note="PFAM: Uncharacterised conserved protein UCP016719;
KEGG: cch:Cag_0194 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910696.1"
/db_xref="GI:119356052"
/db_xref="InterPro:IPR008302"
/db_xref="GeneID:4570586"
/translation="MVKTGLDIFLENIDGYRNRTIGMIVNQTSVTSDLRYSWNVLREK
GLDIRKIFSPEHGLFATEQDQIAVGSQPVPDIELVSLYGSSSDTLIPDCTTLDDLDLI
LFDIQDVGARYYTYVNTLALFMEAATGRDLEIMVLDRPNPLGGAVVEGPLLDMAYRSF
VGIFPVPVRHGMTPGELALLYRDWKKLDIRLSVLSMRGWSRTMLFHETGLPWVPPSPN
MPTVESAAVYPGMCLFEGLNASEGRGTTTPFQLLGAPFINPNHLLEQCKGTGFEGIYL
RPTWFKPTFHKFQGEAIGGLWIHVCDQNRFRPFATAVALTAALHKLYPVDLRFLDGVY
EFNDTIPAFDLLAGTDSVRHALLDGNDTPSIISSWQQDETAFLVTKEQYHLYR"
misc_feature 229860..230957
/locus_tag="Cpha266_0205"
/note="Protein of unknown function (DUF1343); Region:
DUF1343; pfam07075"
/db_xref="CDD:203574"
gene 230985..232397
/locus_tag="Cpha266_0206"
/db_xref="GeneID:4570587"
CDS 230985..232397
/locus_tag="Cpha266_0206"
/note="PFAM: Na+/solute symporter;
KEGG: cch:Cag_0195 sodium:solute symporter family protein"
/codon_start=1
/transl_table=11
/product="Na+/solute symporter"
/protein_id="YP_910697.1"
/db_xref="GI:119356053"
/db_xref="InterPro:IPR001734"
/db_xref="GeneID:4570587"
/translation="MQALDIAIIVFFLAGSILLGLWQGKSNKNTGDYFLGGHKFPWIV
AMLSIVATETSVLTFVSVPGLAYRGDWTFLQLPLGYILGRILVSILLLPVYFKNGVTS
IYEVIGSRFGTGMQKLASIVFLVTRILGDGVRFLATGVVVQVVTGWSLPVSVMIIGVV
TLVYTITGGLKTVVWLDSIQFGLYLLGGIITIAFILLHLESSPQETFAALADAGKLAV
LNTGGNILFNPMTFGSAFTGGIFLSLASHGIDYMMVQRVLGCRDLGSARKALIGSGFF
VFFQFMIFLLAGSLMYLFMQGSVTEKDREFASFIVNYLPSGLKGLLLAGILSAAMSTI
ASSINSLAASTVTDLLGGRVSLNFSKLISAGWAVVLIGIALIFDESDKAIIMVGLEIA
SFTYGGLLGLFLLSKTTQKYHPASLAIGLLASMGIVFVLKLYGIAWTWYILVSVSVNI
MITILVNTMLRSIMSKGEQS"
misc_feature 230997..232355
/locus_tag="Cpha266_0206"
/note="uncharacterized subgroup of the Na(+)/iodide (NIS)
cotransporter subfamily; putative solute-binding domain;
Region: SLC5sbd_NIS-like_u1; cd11493"
/db_xref="CDD:212062"
misc_feature order(231135..231137,231144..231146,231969..231971,
231978..231983)
/locus_tag="Cpha266_0206"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212062"
gene 232510..232761
/locus_tag="Cpha266_0207"
/db_xref="GeneID:4570588"
CDS 232510..232761
/locus_tag="Cpha266_0207"
/note="PFAM: bacteriochlorophyll C binding protein;
KEGG: cte:CT2062 chlorosome envelope protein E"
/codon_start=1
/transl_table=11
/product="bacteriochlorophyll C binding protein"
/protein_id="YP_910698.1"
/db_xref="GI:119356054"
/db_xref="InterPro:IPR001470"
/db_xref="GeneID:4570588"
/translation="MSKISGAFTQWAEAYGRFVEIFTDGHWWVTGDCMENVGKTTKRL
LRNAYPYIYGGGSSVDIKGSSPDKGGYATPTKEIKRRFE"
misc_feature 232516..232758
/locus_tag="Cpha266_0207"
/note="Bacteriochlorophyll C binding protein; Region:
Bac_chlorC; pfam02043"
/db_xref="CDD:110989"
gene complement(232932..233630)
/locus_tag="Cpha266_0208"
/db_xref="GeneID:4570589"
CDS complement(232932..233630)
/locus_tag="Cpha266_0208"
/note="PFAM: NAD-dependent epimerase/dehydratase; NmrA
family protein;
KEGG: cte:CT2065 hypothetical protein"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_910699.1"
/db_xref="GI:119356055"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR008030"
/db_xref="GeneID:4570589"
/translation="MNNTCDYRGTVLVAGSTGKTGLWVVKRLQHYGIPVRVLVRSARK
AAVFGNTVEVAVGLVQNSADLTEAVKGCDAVISALGSSQFFGEASPAEVDRNGAIRLA
DEASRMGVRHFAMVSSIAVTRWYHPLNLFAGVLSMKYAAEEHVRSLFSRENRSYTIVR
PGGLKDGDPLQFRLHVDQGDRIWNGWINRSDVAELLVESLWLESAKNKTFEVINEAEE
VQESLEQYYGKLSN"
misc_feature complement(232986..233603)
/locus_tag="Cpha266_0208"
/note="atypical (a) SDRs, subgroup 5; Region: SDR_a5;
cd05243"
/db_xref="CDD:187554"
misc_feature complement(233031..233600)
/locus_tag="Cpha266_0208"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:205638"
misc_feature complement(order(233139..233150,233217..233219,
233277..233282,233352..233354,233391..233396,
233454..233459,233511..233513,233571..233582,
233586..233588))
/locus_tag="Cpha266_0208"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187554"
misc_feature complement(order(233217..233219,233229..233231,
233277..233279,233349..233351))
/locus_tag="Cpha266_0208"
/note="putative active site [active]"
/db_xref="CDD:187554"
gene 233837..235177
/locus_tag="Cpha266_0209"
/db_xref="GeneID:4570590"
CDS 233837..235177
/locus_tag="Cpha266_0209"
/note="PFAM: pentapeptide repeat protein;
KEGG: plt:Plut_2015 pentapeptide repeat family protein"
/codon_start=1
/transl_table=11
/product="pentapeptide repeat-containing protein"
/protein_id="YP_910700.1"
/db_xref="GI:119356056"
/db_xref="InterPro:IPR001646"
/db_xref="GeneID:4570590"
/translation="MKQIWHLAGIVLLTVSGFLPVSSAIGFDPDAVKLLVKSPKEWNA
FRQQHSMQPVDLDKAKLEDADLEGANLSNSSLVRAELSGANLNNADLRGSNLQQAFIK
KADLKGADLREAYLVKVNLKEAFMEKSMLQKANLQSANLRWTRFHRADLAGSNLQDAV
LFETSFVDADLRGANLKGALYVGNANFSGAKISSNTITPSGEKATASWAAIRDAEYIK
EADAAMPVYASLPVMVFASPSAGLKSASASSGQAVMGSKQQQALMVDDVETWNTMRAA
NPELKIELKEEKLENARLKGVNLQKASMPGADFEDANLDEAMMEGADLSKADFQKADM
KKVKLQGANLSGANLDRSFMEGADLRNANLSGANLFGAMLKDANLSGANLSGASLFET
DLEGANLSGANLKGANLVEPNLKNAIISPDTILPSGKNATQSWAVIKGATFVKP"
sig_peptide 233837..233917
/locus_tag="Cpha266_0209"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.991) with cleavage site probability 0.573 at
residue 27"
misc_feature 234056..234175
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature 234086..234889
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats containing protein [Function
unknown]; Region: COG1357"
/db_xref="CDD:31548"
misc_feature 234146..234262
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature 234251..234370
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature 234755..234874
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature 234800..235033
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature 234920..235054
/locus_tag="Cpha266_0209"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(235220..235477)
/locus_tag="Cpha266_0210"
/db_xref="GeneID:4570591"
CDS complement(235220..235477)
/locus_tag="Cpha266_0210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910701.1"
/db_xref="GI:119356057"
/db_xref="GeneID:4570591"
/translation="MTVILTSAVQPCNRHQNRRGQNSYWPLLNVMNVRVTEKVFTPYL
RTTDKLKNRFPRAILRQWKSPEKAQQQIFILHVLRIKKAAL"
gene complement(235520..235813)
/locus_tag="Cpha266_0211"
/db_xref="GeneID:4570592"
CDS complement(235520..235813)
/locus_tag="Cpha266_0211"
/note="KEGG: plt:Plut_2016 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910702.1"
/db_xref="GI:119356058"
/db_xref="GeneID:4570592"
/translation="MIQFRVGDPIVYHKPKTSFSPGPRAKQVYPLQHGEDYHYVVDKF
WTVSQVNRDGTLEVTTRTGKKHLLDAGDPNICKAHLIQHILFRKRFPSLADLL"
gene 235828..236106
/locus_tag="Cpha266_0212"
/db_xref="GeneID:4570593"
CDS 235828..236106
/locus_tag="Cpha266_0212"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910703.1"
/db_xref="GI:119356059"
/db_xref="GeneID:4570593"
/translation="MLVIGLFNWVFRHLSLFFSANRTLVVFRFVGGPVFFGLWRLKEL
SPFAPRSAPGNYERCFYVLKLLTYFFFDGYLKIKNERMVYGSTKWMMR"
gene complement(236076..237254)
/locus_tag="Cpha266_0213"
/db_xref="GeneID:4570594"
CDS complement(236076..237254)
/locus_tag="Cpha266_0213"
/EC_number="3.6.3.16"
/note="KEGG: cte:CT2070 ArsA ATPase family protein;
TIGRFAM: arsenite-activated ATPase ArsA;
PFAM: Anion-transporting ATPase"
/codon_start=1
/transl_table=11
/product="arsenite-activated ATPase ArsA"
/protein_id="YP_910704.1"
/db_xref="GI:119356060"
/db_xref="InterPro:IPR003348"
/db_xref="GeneID:4570594"
/translation="MRLILMTGKGGVGKTSMAAATGLRCAELGYKTLVLSTDPAHSLA
DSFDMALGHNPNRVSNNLWGAELDVLKELEQNWGTVKRYITGVLQARGLEGIQAEELA
ILPGMDEIFGLVRVFRHHKEGDYDVLIIDSAPTGTALRLLSIPEVAGWYMRRLYKPFE
KVALYLRPLVEPIFRPLAGFSLPDKEMMDVPYEFYEQIDALGKILTDHAVTSVRLVTN
PEKMVIKESLRAHAYLGLYNIAVDLVIANRIIPPEVTDPYFTFWKENQTLYRQEIQDN
FAPLPVKEVPLYSREICGMQTLEKLKEMLYGNEDPAQVYYKEQTFQIKQTTQGFTLEL
YIPGIPKDQIQLGKNGDELHVRIGNHRRNMVLPQALASLKTTGAEMDGDHLIIHFVEP
"
misc_feature complement(236334..237254)
/locus_tag="Cpha266_0213"
/note="Anion-transporting ATPase; Region: ArsA_ATPase;
pfam02374"
/db_xref="CDD:202225"
misc_feature complement(236400..237248)
/locus_tag="Cpha266_0213"
/note="ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular concentration
of oxyanion produces...; Region: ArsA; cd02035"
/db_xref="CDD:73298"
misc_feature complement(237207..237233)
/locus_tag="Cpha266_0213"
/note="P loop; other site"
/db_xref="CDD:73298"
misc_feature complement(order(236862..236864,237141..237143,
237207..237218,237222..237224))
/locus_tag="Cpha266_0213"
/note="Nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73298"
misc_feature complement(order(236841..236864,237135..237143))
/locus_tag="Cpha266_0213"
/note="DTAP/Switch II; other site"
/db_xref="CDD:73298"
misc_feature complement(237135..237143)
/locus_tag="Cpha266_0213"
/note="Switch I; other site"
/db_xref="CDD:73298"
gene complement(237528..238454)
/locus_tag="Cpha266_0214"
/db_xref="GeneID:4570701"
CDS complement(237528..238454)
/locus_tag="Cpha266_0214"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: cte:CT2075 TPR domain protein"
/codon_start=1
/transl_table=11
/product="TPR repeat-containing protein"
/protein_id="YP_910705.1"
/db_xref="GI:119356061"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:4570701"
/translation="MHSIHRTFITATVFILVFTLSARGESPEDFIELGIVKGRSGDTS
GALDDFNRALILDPKNSGAYYNRGLVNGQLGNFSAAIADYTSAIKLNPHFPGTYNNRG
FAHAATGNYRAAIIDISKAIALDPLIPELYNNRGTVKMSLKDYIGAIEDFTKAARLNP
KLAGPFNNRGLAKSLAGNIMGAIEDFTLALVRDQTYDAAWYNRGNARLSSGDFNGAIE
DYKKALVLQPDLIEAYNNRAFAKASLGDYRGAVDDMNILIEKGTENAMTYYNRGLAKK
MLGDLNGAIADFLKASNLGDTLSVSALREMVK"
sig_peptide complement(238380..238454)
/locus_tag="Cpha266_0214"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.992) with cleavage site probability 0.971 at
residue 25"
misc_feature complement(238176..>238397)
/locus_tag="Cpha266_0214"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(238179..238382)
/locus_tag="Cpha266_0214"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(order(238233..238238,238245..238250,
238257..238262,238338..238343,238350..238355,
238359..238364))
/locus_tag="Cpha266_0214"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(238194..238196,238203..238205,
238215..238217,238251..238253,238296..238298,
238305..238307,238317..238319,238353..238355))
/locus_tag="Cpha266_0214"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(238077..238280)
/locus_tag="Cpha266_0214"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(237972..238268)
/locus_tag="Cpha266_0214"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(238029..238034,238041..238046,
238053..238058,238134..238139,238146..238151,
238155..238160,238245..238250,238257..238262,
238266..238268))
/locus_tag="Cpha266_0214"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(237990..237992,237999..238001,
238011..238013,238047..238049,238092..238094,
238101..238103,238113..238115,238149..238151,
238194..238196,238203..238205,238215..238217,
238251..238253))
/locus_tag="Cpha266_0214"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(237975..238166)
/locus_tag="Cpha266_0214"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(237771..237959)
/locus_tag="Cpha266_0214"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(237573..237860)
/locus_tag="Cpha266_0214"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(237621..237626,237633..237638,
237645..237650,237726..237731,237738..237743,
237747..237752,237837..237842,237849..237854,
237858..237860))
/locus_tag="Cpha266_0214"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(237582..237584,237591..237593,
237603..237605,237639..237641,237684..237686,
237693..237695,237705..237707,237741..237743,
237786..237788,237795..237797,237807..237809,
237843..237845))
/locus_tag="Cpha266_0214"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(237573..237770)
/locus_tag="Cpha266_0214"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
gene 238734..239249
/locus_tag="Cpha266_0215"
/db_xref="GeneID:4570702"
CDS 238734..239249
/locus_tag="Cpha266_0215"
/note="TIGRFAM: rare lipoprotein A;
PFAM: Rare lipoprotein A;
KEGG: cch:Cag_1684 rare lipoprotein A"
/codon_start=1
/transl_table=11
/product="rare lipoprotein A"
/protein_id="YP_910706.1"
/db_xref="GI:119356062"
/db_xref="InterPro:IPR005132"
/db_xref="InterPro:IPR012997"
/db_xref="GeneID:4570702"
/translation="MRDEKRNFTIPFYALLIGAWYTALQITFPAFSSAQPPEFSIQSI
TNQPSASSSGMLSDQPKSRTFLRVAEGKASYYSNQFHGRRTANGETFDMNELTAAHPS
LPFGTWVRVINLRNGKDVVVRINDRGPFVRGRIIDLSAGAAKRIGLFKSGTANVRIEP
VKHSPEDPMAG"
sig_peptide 238734..238838
/locus_tag="Cpha266_0215"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.844) with cleavage site probability 0.655 at
residue 35"
misc_feature <238911..>239219
/locus_tag="Cpha266_0215"
/note="Lipoproteins [Cell envelope biogenesis, outer
membrane]; Region: RlpA; COG0797"
/db_xref="CDD:31140"
misc_feature 238935..239207
/locus_tag="Cpha266_0215"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:202595"
gene complement(239375..239815)
/locus_tag="Cpha266_0216"
/db_xref="GeneID:4570703"
CDS complement(239375..239815)
/locus_tag="Cpha266_0216"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910707.1"
/db_xref="GI:119356063"
/db_xref="GeneID:4570703"
/translation="MTNHQNQQVSFALTEITTENLSITPETFDTDKPVQMNIGLNFGI
NSEKQSLKTLFKASFHQDDQEFMVIETGCAFTLDPNSWKMLSNDEIRRFILPKTLAAH
FSVLTAGTARGILHVKTENTPLNKFIIPANNLDGLIQKDIVLNY"
gene complement(240184..240360)
/locus_tag="Cpha266_0217"
/db_xref="GeneID:4570704"
CDS complement(240184..240360)
/locus_tag="Cpha266_0217"
/note="PFAM: Rubredoxin-type Fe(Cys)4 protein;
KEGG: plt:Plut_1978 rubredoxin-like"
/codon_start=1
/transl_table=11
/product="rubredoxin-type Fe(Cys)4 protein"
/protein_id="YP_910708.1"
/db_xref="GI:119356064"
/db_xref="InterPro:IPR001052"
/db_xref="InterPro:IPR004039"
/db_xref="GeneID:4570704"
/translation="MEKWVCVPCGYVYDPEIGDPDSGVEPGTPFENIPDDWCCPVCGV
DKSLFEPYDERRNR"
misc_feature complement(240199..240360)
/locus_tag="Cpha266_0217"
/note="Rubredoxin [Energy production and conversion];
Region: COG1773"
/db_xref="CDD:31959"
misc_feature complement(240205..240354)
/locus_tag="Cpha266_0217"
/note="Rubredoxin; nonheme iron binding domains containing
a [Fe(SCys)4] center. Rubredoxins are small nonheme iron
proteins. The iron atom is coordinated by four cysteine
residues (Fe(S-Cys)4), but iron can also be replaced by
cobalt, nickel or zinc. They are...; Region: rubredoxin;
cd00730"
/db_xref="CDD:29433"
misc_feature complement(order(240235..240237,240244..240246,
240334..240336,240343..240345))
/locus_tag="Cpha266_0217"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29433"
gene complement(240597..241397)
/gene="dapF"
/locus_tag="Cpha266_0218"
/db_xref="GeneID:4570705"
CDS complement(240597..241397)
/gene="dapF"
/locus_tag="Cpha266_0218"
/EC_number="5.1.1.7"
/note="involved in lysine biosynthesis; DAP epimerase;
produces DL-diaminopimelate from LL-diaminopimelate"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="YP_910709.1"
/db_xref="GI:119356065"
/db_xref="InterPro:IPR001653"
/db_xref="GeneID:4570705"
/translation="MQINFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGA
DGLILVEPSLHCDFTMKYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEAN
SNRYDAEVTNSETVRLHMLDARDFRYHMEIEGFACTFVNTGSPHVVIFADDINAINVA
EKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIISR
KLGKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP"
misc_feature complement(240600..241397)
/gene="dapF"
/locus_tag="Cpha266_0218"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:179032"
misc_feature complement(<241146..241385)
/gene="dapF"
/locus_tag="Cpha266_0218"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
misc_feature complement(240624..240986)
/gene="dapF"
/locus_tag="Cpha266_0218"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
gene 241814..244009
/locus_tag="Cpha266_0219"
/db_xref="GeneID:4570706"
CDS 241814..244009
/locus_tag="Cpha266_0219"
/note="KEGG: plt:Plut_1976 photosystem P840 reaction
center, large subunit"
/codon_start=1
/transl_table=11
/product="photosystem P840 reaction center, large subunit"
/protein_id="YP_910710.1"
/db_xref="GI:119356066"
/db_xref="InterPro:IPR001280"
/db_xref="GeneID:4570706"
/translation="MAEQVNPAGVKPKGSVPPPKGNAPSPKGNGASGGPSVIKEQDAA
KMRRFLFQRTETRSTKWYQIFDTEKLDDEQVVGGHLALLGVMGFLMAIYYISGIQVFP
WGAPGFHDNWFYLTIKPRMVSMGIDTYSTRSADLEQAATNLLGWALLHVISGSILLFG
GWRHWTHNLTNPFTGRAGNFRDFRFLGKFGDVVFSGTSAKSYKDALGPHAVYMSLLFL
GWGLIMWLALGWAPVPDFQTINSETFMSFVWFVVFFALGIYWWNNPPNAATHLNDDMK
AAFSVHLTAIGYINIALGVIAFVAFQQPSFAPYYKELDNLVFYLYGEPFNRVSYDFVQ
EGGQIVSGSKEFTEFAPYAILPKNGEAFGMSRVVINLITFNHIICGVLYVFAGVYHGG
QYLLKIQLNGLYNQIKSIWITKGRDQEVQVKILGTVMALCFATMLSVYAVIVWNTICE
LNIFGTNIMMSFYWLKPLPMFQWMFADPSINDWVMAHVITAGSLFSLIALVRIAFFAH
TSPLWDDLGLKKNSYSFPCLGPVYGGTCGVSIQDQLWFAMLWGVKGLSAVCWYIDGAW
IASMMYGVPVADAKAWDSVAGLQHHYTSGIFYYFWTETVTIFSSSHLSTILMIGHLIW
FISFAVWFEDRGSRLEGADIQTRTVRWLGKKFLNRDVTFRFPVLTISDSKLAGTFLYF
GGTFMLVFLFIANGFYQTNSPLPPTVGDASLSGQQMLTQVVDYLMKLIA"
misc_feature <243257..243496
/locus_tag="Cpha266_0219"
/note="Photosystem I psaA/psaB protein; Region: PsaA_PsaB;
cl08224"
/db_xref="CDD:195660"
gene 244107..244808
/locus_tag="Cpha266_0220"
/db_xref="GeneID:4570707"
CDS 244107..244808
/locus_tag="Cpha266_0220"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: cch:Cag_0344 photosystem P840 reaction center
iron-sulfur protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_910711.1"
/db_xref="GI:119356067"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4570707"
/translation="MAEPVKQPDVPPAPVSKAAPAAPKAAPKAASPAAKQGEVKPKIS
AAPKQTSGKIRLEALNVNLGRTGIRQESALPVKKAPPKAAPKPAPGGAKPAPGAKPAP
KTAGAPAGTPVAKSAPAAGTPLAKAAPRAKSHYFIIENLCVGCGLCLDKCPPKVNAIG
YKFYGDVQEGGFRCYIDQDACISCSACFSTDECPSGALIEVLPDGQVLDFSFTPPERL
DFDLRFLHRFHREVR"
misc_feature 244509..244583
/locus_tag="Cpha266_0220"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
misc_feature 244512..244688
/locus_tag="Cpha266_0220"
/note="4Fe-4S dicluster domain; Region: Fer4_10;
pfam13237"
/db_xref="CDD:205417"
gene 244888..245670
/locus_tag="Cpha266_0221"
/db_xref="GeneID:4570708"
CDS 244888..245670
/locus_tag="Cpha266_0221"
/EC_number="2.4.1.83"
/note="PFAM: glycosyl transferase, family 2;
KEGG: plt:Plut_1974 dolichyl-phosphate
beta-D-mannosyltransferase"
/codon_start=1
/transl_table=11
/product="dolichyl-phosphate beta-D-mannosyltransferase"
/protein_id="YP_910712.1"
/db_xref="GI:119356068"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:4570708"
/translation="MQQKLKKKGDICDLPNEKYEAPVALVIIPTYNEADNIEKLLVAI
FKMYPSSVDVLVIDDNSPDGTADIVREVQAYERKLHLVTRAGKLGLGTAYLKGFAYAL
DHGYRFIIEMDADYSHDPEMIRTLLEKMAEADLVLGSRYLNNTVNVINWPLRRLILSK
AASIYTRYVSGLPVSDPTSGFKCFKREVLETLDLKKVHSEGYSFQIEMNYRVWKKGFA
IVEVPIVFTDRTVGKSKMTRKNIREAIWIVWLLKLKTILRML"
misc_feature 244963..245640
/locus_tag="Cpha266_0221"
/note="DPM1_like represents putative enzymes similar to
eukaryotic DPM1; Region: DPM1_like; cd06442"
/db_xref="CDD:133062"
misc_feature order(244972..244974,244978..244980,245230..245232)
/locus_tag="Cpha266_0221"
/note="Ligand binding site; other site"
/db_xref="CDD:133062"
misc_feature order(245062..245064,245227..245232)
/locus_tag="Cpha266_0221"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133062"
misc_feature 245224..245232
/locus_tag="Cpha266_0221"
/note="DXD motif; other site"
/db_xref="CDD:133062"
gene complement(245800..247875)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/db_xref="GeneID:4570709"
CDS complement(245800..247875)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_910713.1"
/db_xref="GI:119356069"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
/db_xref="GeneID:4570709"
/translation="MQSIQPDQLRNIVITGHAGAGKTILCESLALAMGVTNRLGSIDD
GTTLSDYSAEEVQRKHSLNTSVIHGFWNDKKINIIDTPGLLDFQGDVKSAMRVADTVL
ITVNAANGVEVGTDATWDYTKEYHKPTMFVLSRLDADRTNFNNTLEELRDHFGHLVTP
IQFPAEEGLGHHILIDVLMMKQLEFSPDRPGNMTISTIPDLYLKRAEEMHQQLVEAVA
ETDEELMNRYFEVGNLTEEELRTGIKSALLTRTFFPVFCTSPLHLIGTERLLNIIVNL
CPSPIERGPEHALCSLDDTERLLQPDPDGPTIAFIFKTMSEPRVGEISYLRVYSGHLE
TGHELIDVQTGQPEKIGQVYTIIGQKKTPVEKLLAGDIGMVVKLKDAHTNDTLADKGS
NCRISPILFPVPVLASAIIPVTQGDEEKISAGLHHLHEEDPSFTIMHDVEFNQTILKT
FGETHLEIIISRLQNKFNVTVEIAPIKIPYRETIRVTSTAQGKYKKQSGGRGQYGDVW
VRLEPKERDSGFEFSSEVVGGVVPTRYIPAVEKGLRESIEAGVLAGYPVVDMKAIVYD
GSFHPVDSSEFAFKIAASMAFKAAFDKAKPLLLEPFYELNVFAPEQYTGEIVGEISSK
RGKILGMDTDARFQIVKALIPQAALTSFHHALIRLTQSRARYTYKFNHYEEAPPEIVK
QVTSEKSVA"
misc_feature complement(247036..247845)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="Elongation factor G (EF-G) family; Region:
EF-G_bact; cd04170"
/db_xref="CDD:206733"
misc_feature complement(245824..247830)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="elongation factor G; Reviewed; Region: PRK12740"
/db_xref="CDD:183713"
misc_feature complement(247807..247830)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="G1 box; other site"
/db_xref="CDD:206733"
misc_feature complement(order(247429..247431,247441..247443,
247549..247554,247621..247626,247678..247683,
247783..247788,247795..247797,247804..247809,
247819..247821,247825..247827))
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206733"
misc_feature complement(order(247093..247095,247099..247101,
247462..247467,247471..247473,247627..247629,
247693..247698,247804..247824))
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206733"
misc_feature complement(order(247681..247683,247687..247701))
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="Switch I region; other site"
/db_xref="CDD:206733"
misc_feature complement(247696..247698)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="G2 box; other site"
/db_xref="CDD:206733"
misc_feature complement(247627..247638)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="G3 box; other site"
/db_xref="CDD:206733"
misc_feature complement(247576..247632)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="Switch II region; other site"
/db_xref="CDD:206733"
misc_feature complement(247465..247476)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="G4 box; other site"
/db_xref="CDD:206733"
misc_feature complement(247093..247101)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="G5 box; other site"
/db_xref="CDD:206733"
misc_feature complement(246709..246957)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature complement(246091..246438)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature complement(245845..246078)
/locus_tag="Cpha266_0222"
/gene_synonym="fusA"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 248120..249433
/gene="eno"
/locus_tag="Cpha266_0223"
/db_xref="GeneID:4570710"
CDS 248120..249433
/gene="eno"
/locus_tag="Cpha266_0223"
/EC_number="4.2.1.11"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_910714.1"
/db_xref="GI:119356070"
/db_xref="InterPro:IPR000941"
/db_xref="GeneID:4570710"
/translation="MPIIRKILARQILDSRGNPTVEVDVYTENSFGRAAVPSGASTGV
HEAVELRDGDSAVYLGKGVLKAVDHVNTVINDRLKGMFVTDQEEIDMAMLALDGTPNK
SRLGANALLGVSMACAKAGAEYSGLPLYRYIGGTMANTLPVPMMNVLNGGAHADNTVD
FQEFMIMPVGFSSYSDALRSGAEIFHALKSLLKSKGLSTAVGDEGGFAPNLKSNEEAI
ELVIEAVGKAGYKIGSSTANGGLGDAQVMIALDPASSEFYDAAKQKYVFKKSSKQELS
SLEMAEYWEKWASDYPIISIEDGMAEDDWDGWKILTDKIGSRVQLVGDDLFVTNTSRL
ALGIERGVGNSILVKVNQIGTLTETLQAIDLARRNGYTAVISHRSGETEDSTIAQIAV
ATNAGQIKTGSLSRSDRMAKYNELLRIEEELGLQAKYPALSAFRV"
misc_feature 248120..249427
/gene="eno"
/locus_tag="Cpha266_0223"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 248135..249385
/gene="eno"
/locus_tag="Cpha266_0223"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(248141..248143,248147..248173,248183..248185,
248216..248218,248582..248590,248651..248656,
248663..248668,248675..248680,248717..248722,
248741..248743,248747..248749,249260..249268,
249335..249343,249347..249352,249359..249361,
249368..249373,249380..249382)
/gene="eno"
/locus_tag="Cpha266_0223"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(248240..248242,248870..248872,249008..249010,
249089..249091)
/gene="eno"
/locus_tag="Cpha266_0223"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(248579..248581,248729..248731,249164..249166,
249248..249256,249317..249319)
/gene="eno"
/locus_tag="Cpha266_0223"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 249641..249946
/locus_tag="Cpha266_0224"
/db_xref="GeneID:4570711"
CDS 249641..249946
/locus_tag="Cpha266_0224"
/note="PFAM: Septum formation initiator;
KEGG: plt:Plut_1971 hypothetical protein"
/codon_start=1
/transl_table=11
/product="septum formation initiator"
/protein_id="YP_910715.1"
/db_xref="GI:119356071"
/db_xref="InterPro:IPR007060"
/db_xref="GeneID:4570711"
/translation="MKMVNEVWAHISADPKKFFFLIALILFSVWFLFDDYGVVKRIRM
EADHRLLQQKHLEAERLILNNELRIRNAYAPDSIEKAAREKYNFRKEGEILFIIRNK"
misc_feature 249731..249943
/locus_tag="Cpha266_0224"
/note="Septum formation initiator; Region: DivIC; cl11433"
/db_xref="CDD:209318"
gene 249984..252017
/locus_tag="Cpha266_0225"
/db_xref="GeneID:4570712"
CDS 249984..252017
/locus_tag="Cpha266_0225"
/EC_number="1.17.7.1"
/note="KEGG: cch:Cag_0349 IspG protein;
TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase;
PFAM: IspG family protein"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase"
/protein_id="YP_910716.1"
/db_xref="GI:119356072"
/db_xref="InterPro:IPR004588"
/db_xref="GeneID:4570712"
/translation="MFQYRRRFTREVPFGKIALGGYMPIRVESMTNTHTLDTVATVKQ
CRRLYEAGCEIIRLTVPTERDAENLRSIRDQLRSDGIDTPLVADIHFSSRAAFKAVEF
VENIRINPGNYATKQKFSAETYTDDEYQEEIERVRKEFLPLVYKAREFGASMRIGTNH
GSLSDRIVSRYGNSPEGMVEAALEFARICEEEGYHDVLFSMKSSNVKVMIQAYRLLAV
KADAELRYAYPLHLGVTEAGDGDEGRVKSAMGIGALLEDGLGDTIRVSLTEDPVNEVP
VGFAIVKKYNDLQLIRGENGHVPIKQLIENQGSSFTNELPPFDPFSYQRRISRSFFVG
GFAIGGDSMPRVETEAVIPLCRPEELFHEIMQRLLPEESIDAIRSELVGVRVNTVEDL
ELLDELLSRLGEAKRFITVSTKDIELFFRLLDKVEKVRLDITEGEMLDRNIFDRLTND
RLASVEFCFLHETSGAGVPAEVLGLLAQKAGLQGLERIFFSILSAHSVFVYRRLVQFF
SKRGFDYPLVIRFRQMDSVKLDCLISCAVQTGSLFSDGIGDVLALQTGLDVAAEITLA
FNILQGARIRMSKTEFISCPGCGRTYFDLEKAAASIKLRLSHLKGLKVGIMGCVVNGP
GEMADADFGYVGSGKGRISLYVGKECVEENLPESAAVDRLVGLIQEKGKWVNP"
misc_feature 249999..>250847
/locus_tag="Cpha266_0225"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
misc_feature 250008..>250832
/locus_tag="Cpha266_0225"
/note="GcpE protein; Region: GcpE; pfam04551"
/db_xref="CDD:191025"
misc_feature <251499..252014
/locus_tag="Cpha266_0225"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:134348"
gene 252086..252865
/locus_tag="Cpha266_0226"
/db_xref="GeneID:4570713"
CDS 252086..252865
/locus_tag="Cpha266_0226"
/note="PFAM: short-chain dehydrogenase/reductase SDR; KR;
KEGG: plt:Plut_1969 oxidoreductase, short-chain
dehydrogenase/reductase family"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_910717.1"
/db_xref="GI:119356073"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:4570713"
/translation="MLFTLVTGASMGIGEAFARKFAETGTSLLLVARSEDKLLALAEE
LKASGATDVRILAEDLSREGSPERIYEFCLRENIAIDVLVNCAGLSFAGDFDKLPVGK
LEEIMAVNMLALCRLTRLFLPGMIKRKGGGIMNIASIGGFQGVPGLALYSATKSFVIT
LTEALHTELKETGVKAVAVCPGFIQTGFLAKAGHSQDGILLPVYSRDLVVKAAIKGYK
KNRLRIFPTVIDFLLVFSQRFVPRKTAVKLADVLSSARSRR"
misc_feature 252098..252832
/locus_tag="Cpha266_0226"
/note="Short-chain dehydrogenases of various substrate
specificities [General function prediction only]; Region:
DltE; COG0300"
/db_xref="CDD:30648"
misc_feature 252098..>252664
/locus_tag="Cpha266_0226"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(252107..252109,252113..252124,252179..252187,
252257..252265,252341..252349,252410..252412,
252491..252499,252536..252538,252548..252550,
252626..252637,252641..252646)
/locus_tag="Cpha266_0226"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(252413..252415,252497..252499,252536..252538,
252548..252550)
/locus_tag="Cpha266_0226"
/note="active site"
/db_xref="CDD:212491"
gene 252936..253008
/locus_tag="Cpha266_R0003"
/note="tRNA-Thr1"
/db_xref="GeneID:4570714"
tRNA 252936..253008
/locus_tag="Cpha266_R0003"
/product="tRNA-Thr"
/db_xref="GeneID:4570714"
gene 253022..253104
/locus_tag="Cpha266_R0004"
/note="tRNA-Tyr1"
/db_xref="GeneID:4570715"
tRNA 253022..253104
/locus_tag="Cpha266_R0004"
/product="tRNA-Tyr"
/db_xref="GeneID:4570715"
gene 253131..253203
/locus_tag="Cpha266_R0005"
/note="tRNA-Thr2"
/db_xref="GeneID:4570716"
tRNA 253131..253203
/locus_tag="Cpha266_R0005"
/product="tRNA-Thr"
/db_xref="GeneID:4570716"
gene 253227..253302
/locus_tag="Cpha266_R0006"
/note="tRNA-Trp1"
/db_xref="GeneID:4570793"
tRNA 253227..253302
/locus_tag="Cpha266_R0006"
/product="tRNA-Trp"
/db_xref="GeneID:4570793"
gene 253349..253540
/gene="secE"
/locus_tag="Cpha266_0227"
/db_xref="GeneID:4570794"
CDS 253349..253540
/gene="secE"
/locus_tag="Cpha266_0227"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_910718.1"
/db_xref="GI:119356074"
/db_xref="InterPro:IPR001901"
/db_xref="InterPro:IPR005807"
/db_xref="GeneID:4570794"
/translation="MNKYVGKVGQYYRDVVSEMRKVVWPGKDELKDLTIVVLTVSGIL
ALFTFLVDWVINAVMGLLL"
misc_feature 253349..253534
/gene="secE"
/locus_tag="Cpha266_0227"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 253562..254137
/locus_tag="Cpha266_0228"
/db_xref="GeneID:4570795"
CDS 253562..254137
/locus_tag="Cpha266_0228"
/note="KEGG: plt:Plut_1967 NusG antitermination factor;
TIGRFAM: transcription termination/antitermination factor
NusG;
PFAM: transcription antitermination protein NusG;
SMART: NGN domain protein"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein nusG"
/protein_id="YP_910719.1"
/db_xref="GI:119356075"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR003257"
/db_xref="InterPro:IPR006645"
/db_xref="GeneID:4570795"
/translation="MNTRKKAVEEQGVPGPRWYALRIYSGHERKVKEGIEAEVARCGL
ADKILQIYVPYERFVEVKNGKKRSLTKNAFPGYVLIEAVLDKQTRNVILDMPSVMGFL
GVDDVPTPLRPEEVEKILVTENTVEHRAVIEAPFRIGDSVKVIDGPFSSLTGVVHEVC
TERMKVKVMISFFGRSTPTELDFSQVKSVSQ"
misc_feature 253610..254131
/locus_tag="Cpha266_0228"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 253610..253921
/locus_tag="Cpha266_0228"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(253619..253621,253721..253723,253781..253783,
253790..253792,253796..253798,253892..253894,
253916..253918)
/locus_tag="Cpha266_0228"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 253964..>254029
/locus_tag="Cpha266_0228"
/note="KOW motif; Region: KOW; cl00354"
/db_xref="CDD:199293"
gene 254181..254606
/gene="rplK"
/locus_tag="Cpha266_0229"
/db_xref="GeneID:4570796"
CDS 254181..254606
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_910720.1"
/db_xref="GI:119356076"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR006519"
/db_xref="GeneID:4570796"
/translation="MAKKIIGFIKLQIPAGAANPAPPVGPALGQKGVNIMEFCKQFNA
KTQAEAGMITPVVITVYSDKSFTFITKTPPAAVLLLKEAQLKKGSGEPNRNKVGTVSR
EQVRRIAELKMPDLNAVDVAGAEQMVMGTARSMGIVVEN"
misc_feature 254181..254603
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 254205..254597
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(254208..254210,254268..254270,254400..254408,
254418..254420,254439..254441,254514..254516,
254529..254537,254547..254549,254556..254561,
254568..254573,254577..254585)
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(254208..254210,254349..254351,254355..254366,
254376..254378,254382..254387,254517..254522,
254529..254534)
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(254256..254258,254268..254270)
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(254457..254459,254466..254468)
/gene="rplK"
/locus_tag="Cpha266_0229"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 254677..255366
/gene="rplA"
/locus_tag="Cpha266_0230"
/db_xref="GeneID:4570797"
CDS 254677..255366
/gene="rplA"
/locus_tag="Cpha266_0230"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_910721.1"
/db_xref="GI:119356077"
/db_xref="InterPro:IPR002143"
/db_xref="InterPro:IPR005878"
/db_xref="GeneID:4570797"
/translation="MAGKKYRDAVAKTDRFQEYDLVDAVEKIREITQVKFDATIDIAM
KLGVDPRHADQVVRGTVMLPHGTGKTVSVLVVCKEAKAEEAVAAGADFVGFEEYVEKI
QNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIE
FRVDKAGNVHAPVGKVSFQSEQLVENITSFLKEVVRLKPSAAKGQYVQGIALSSTMSP
SVKVKREKFVA"
misc_feature 254737..255342
/gene="rplA"
/locus_tag="Cpha266_0230"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(254776..254784,254791..254793,254797..254799,
254803..254805,254809..254811,255172..255174,
255178..255180,255184..255186,255322..255327,
255331..255333)
/gene="rplA"
/locus_tag="Cpha266_0230"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 255384..255902
/gene="rplJ"
/locus_tag="Cpha266_0231"
/db_xref="GeneID:4570798"
CDS 255384..255902
/gene="rplJ"
/locus_tag="Cpha266_0231"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_910722.1"
/db_xref="GI:119356078"
/db_xref="InterPro:IPR001790"
/db_xref="InterPro:IPR002363"
/db_xref="GeneID:4570798"
/translation="MKRDKKEQIVQDVAEKIDRSQGIYLTEFQGLSVAKMAELRNEFR
KAGVEYRVVKNTLIKKALRDLSSADRLASGLKSTTAVAFGYDDPLAPAKIIRKFSKTN
EALKFKMASIDGVVYDADSLPALSEMLSKTENIGRAAGLINGVVSSVPMVVNAVARNL
VSVLDQIAKQKQ"
misc_feature 255387..255893
/gene="rplJ"
/locus_tag="Cpha266_0231"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(255399..255404,255411..255413,255543..255554,
255561..255563)
/gene="rplJ"
/locus_tag="Cpha266_0231"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(255648..255650,255717..255719,255726..255728,
255774..255776,255783..255788,255795..255800,
255804..255815,255849..255854,255858..255866,
255873..255878,255882..255887,255891..255893)
/gene="rplJ"
/locus_tag="Cpha266_0231"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 255969..256346
/gene="rplL"
/locus_tag="Cpha266_0232"
/db_xref="GeneID:4570799"
CDS 255969..256346
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_910723.1"
/db_xref="GI:119356079"
/db_xref="InterPro:IPR000206"
/db_xref="InterPro:IPR013823"
/db_xref="GeneID:4570799"
/translation="MSIETLVEEIGKLTLTEASELVKALEEKFGVSAAPAMMAGVMAA
APAGDAPAQEEKTEFDVVLTAAGESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEG
ISKDEAEKVAKELKDVGASVELK"
misc_feature 255969..256340
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(255969..255971,256008..256016,256023..256028,
256035..256037,256044..256046,256089..256091,
256098..256103,256107..256115,256137..256142,
256203..256205,256209..256214,256218..256220,
256224..256229,256269..256274,256278..256280,
256287..256289)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(255978..255980,255987..255989,255999..256001,
256038..256040,256053..256055)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(256020..256022,256029..256034,256044..256046,
256053..256055)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(256176..256181,256188..256193,256200..256202,
256221..256226,256233..256235)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(256179..256181,256191..256193,256200..256202,
256221..256226,256233..256235)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(256179..256181,256188..256193,256200..256202)
/gene="rplL"
/locus_tag="Cpha266_0232"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 256527..260465
/gene="rpoB"
/locus_tag="Cpha266_0233"
/db_xref="GeneID:4570800"
CDS 256527..260465
/gene="rpoB"
/locus_tag="Cpha266_0233"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_910724.1"
/db_xref="GI:119356080"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007121"
/db_xref="InterPro:IPR007641"
/db_xref="InterPro:IPR007644"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR010243"
/db_xref="GeneID:4570800"
/translation="MQFDKSEVHVKVADATPTPCIDFSKIQSVIDPPDLLKVQLDSFH
NFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLEYISYSFDKPKYTVEDCIERGL
TYDVSLKVKLKLSYKDEPDEADWKETIQQEVYLGRIPYMTERGTFIVNGAERVVVAQL
HRSPGVVFSEAIHPNGKKMYSAKIVPTRGSWIEFQTDINNQIFVYIDQKKNFLVTALL
RAIGFAKDEDILGLFDLVEEVKITSAKKEQLIGQYLASDIVDMQTGEVVSARTAITED
IVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALEIVYEELRANE
APDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQPELKKLSDT
IYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHLANRRVR
SVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFATSQLS
QFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIG
LISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMK
IAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQ
RQAVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDV
RLSLLDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELA
LGKNVLVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRD
IYNVSEDALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSS
DVKDASMHVPAGMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKR
LKQLLEGKTSTGIYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVN
ENVMLLVKEFRLKLKDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKM
AGRHGNKGVVGKILPIEDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKEL
GVKFKTPIFNGATYQEVQQELEKAGLPSHGKVSLYDGRTGEQFDDEVTIGYIYMLKLS
HLVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVK
SDDVIGRNKTYEAIVKGQNLPEPGTPESFNVLVRELQGLGLEIRIDDRVP"
misc_feature 256626..258041
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RNA polymerase beta subunit; Region:
RNA_pol_Rpb2_1; pfam04563"
/db_xref="CDD:191028"
misc_feature 256629..>257159
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <257679..>259034
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(258696..258698,258831..258833,258837..258839,
258849..258857,258861..258863)
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature 258783..>259340
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:201307"
misc_feature <259713..260450
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(259755..259757,259761..259763,259836..259844,
259851..259853,259857..259862,260073..260096,
260100..260102)
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(259809..259811,259815..259817,259821..259823,
259887..259889,259893..259895,259902..259904,
259911..259913,259926..259928,259938..259940,
259989..259991,260070..260072,260094..260102,
260106..260108,260145..260147,260154..260162,
260166..260171,260232..260240,260250..260252,
260256..260261,260265..260267,260271..260288,
260292..260309,260319..260321,260388..260390,
260400..260402,260406..260408,260412..260417,
260421..260423,260427..260438,260442..260444,
260448..260450)
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(259833..259835,260076..260078)
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(259836..259838,259875..259877,259956..259961,
259965..259967,260058..260060,260109..260111)
/gene="rpoB"
/locus_tag="Cpha266_0233"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 260535..265013
/locus_tag="Cpha266_0234"
/db_xref="GeneID:4570801"
CDS 260535..265013
/locus_tag="Cpha266_0234"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_910725.1"
/db_xref="GI:119356081"
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
/db_xref="GeneID:4570801"
/translation="MIFSQGASPLKGDFSKIKFSIASPESILAHSRGEVLKPETINYR
TFKPERDGLMCEKIFGPTKDWECYCGKYKRVRYKGIICDRCGVEVTTKSVRRERMGHI
SLAVPVVHTWFFRSVPSKIGALLDLSTKELERIIYYEVYVVINPGEPGAKQGIKKLDR
LTEEQYFQIITEYEDNQDLDDHDSDKFVAKMGGEAIRLLLKSIDLNETAIHLRKVLKE
SSSEQKRADALKRLKVVEAFRKSYEPQKKTRKKAVGLFPEDELPEPYVFEGNKPEYMV
MEVVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEK
RMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRS
VIVVGPELKLHECGLPKSMAIELFQPFVIRRLVERGIAKSVKSAKKLIDKKDQVVWDV
LEKVIDGRPVLLNRAPTLHRLGIQAFQPVLIEGKAIQIHPLVCTAFNADFDGDQMAVH
VPLSQEAQLEAALLMLSSHNLILPQSGKPVTVPSQDMVLGMYYLTKSRPGDPGEGRIF
YSDEDVLIAYNEDRIGLHAQIFVHFNGAVDQKFDPLRVLDTIVDPKSEKYTWLKSQLE
KKTILLTTVGRVIFNQNVPDSIGFINRVIDKKVAKELIGRLSSDVGNVETAKFLDNIK
EVGFHYAMKGGLSVGLSDAIVPDTKVRHIKNAQKDSTKVVKEYNRGTLTDNERYNQIV
DVWQKTSNIVAEESYQKLKKDREGFNPLYMMLDSGARGSREQVRQLTGMRGLIARPQK
SMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDTSLKTADAGYLTRRLHDV
AQDVIVTIEDCGTTRGLHVYRNIEEETSGQIKFREKIRGRVAARDIYDTLNNNVIVKA
GEIITEELGDLIQETAGVEEAEIRSVLTCESKIGICSKCYGTNLSVHQIVEIGEAVGV
IAAQSIGEPGTQLTLRTFHQGGTAQGGISETETKAFYEGQLEFEDLKTVEHSAITEDG
VEEIRIIVVQKNGKINIVDPDSGKILKRYVVPHGAHLHCNAKALVKKDQVLFSSEPNS
TQIIAELHGRVKFADIEKGVTYKEEVDPQTGFAQHTIINWRSKLRANETREPRVLIID
ESGEVRKNYPVPIKSNLYVEDGQKIVPGDIIAKVPRNLDRAGGDITAGLPKVTELFEA
RIPSDPAIVSEIDGYVSFGSQRRSSKEIKVKNDFGEEKVYYVQVGKHVLANEGDEVKA
GDAMTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRVEEPGDTELLPGDLIDRSAFVEANNNVAEKVRVTEKGDAPSRIQEGQLYKTRDITK
LNRELRKNSKNLVAFEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAV
AGKIDYLAGLKENVIVGKLIPAGTGLKRYRNLTLTGESVETISHDASDDASTQNGI"
misc_feature 260565..261677
/locus_tag="Cpha266_0234"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 260574..262472
/locus_tag="Cpha266_0234"
/note="DNA-directed RNA polymerase subunit gamma;
Provisional; Region: rpoC1; PRK02625"
/db_xref="CDD:179452"
misc_feature 261393..262184
/locus_tag="Cpha266_0234"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 262116..262634
/locus_tag="Cpha266_0234"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 262722..262979
/locus_tag="Cpha266_0234"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 263418..>263525
/locus_tag="Cpha266_0234"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 263436..263438
/locus_tag="Cpha266_0234"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <264345..264920
/locus_tag="Cpha266_0234"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(264762..264764,264807..264812)
/locus_tag="Cpha266_0234"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(264852..264854,264870..264872,264888..264890,
264897..264902,264912..264914)
/locus_tag="Cpha266_0234"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(265212..266558)
/locus_tag="Cpha266_0235"
/db_xref="GeneID:4570802"
CDS complement(265212..266558)
/locus_tag="Cpha266_0235"
/note="TIGRFAM: acetyl-CoA carboxylase, biotin
carboxylase;
PFAM: phosphoribosylglycinamide synthetase; ATP-dependent
carboxylate-amine ligase domain protein, ATP-grasp;
Carbamoyl-phosphate synthase L chain, ATP-binding;
Carbamoyl-phosphate synthetase large chain domain protein;
biotin carboxylase domain protein;
KEGG: cch:Cag_0359 acetyl-CoA carboxylase, biotin
carboxylase"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxylase"
/protein_id="YP_910726.1"
/db_xref="GI:119356082"
/db_xref="InterPro:IPR000115"
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR004549"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR005481"
/db_xref="InterPro:IPR005482"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR011764"
/db_xref="GeneID:4570802"
/translation="MFKKILVANRGEIALRIMQTCREMGISTVAVYSTADAESIHVKY
ADEAVCIGPALSRESYLNIPRIIAAAEVTNADAIHPGYGFLAENADFAEVCSSVNIKF
IGPTAKMINQMGDKNTAKATMIAAGVPVVPGSQGLVSNLAEAVKTAQNTGYPVIIKPT
AGGGGKGMRVVHEENQLEKALNTARSEAEQAFGNSGVYIEKFLENPRHVEIQILSDQH
GNTIHLGERDCTVQRRHQKLIEETPSPAVDDALRKTMGDAAVAAAAAINYEGAGTIEF
LLDKHGKFFFMEMNTRIQVEHPVTEERYDVDIVREQIIIADGQSIAGRTFTPKGHSIE
CRINAEDPDHLFRPSPGQLQVFHTPGGHGVRVDSHAYASYVVPSNYDSMIAKLIVTAH
TRDEAIARMSRALDEFIVLGVKTTIPFHKQVMHSAVFQSGVFDTSFLESFRYEKSI"
misc_feature complement(265239..266558)
/locus_tag="Cpha266_0235"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:181492"
misc_feature complement(266235..266555)
/locus_tag="Cpha266_0235"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(265686..266186)
/locus_tag="Cpha266_0235"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature complement(265239..265559)
/locus_tag="Cpha266_0235"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
gene complement(266578..267072)
/locus_tag="Cpha266_0236"
/db_xref="GeneID:4570803"
CDS complement(266578..267072)
/locus_tag="Cpha266_0236"
/note="TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl
carrier protein;
PFAM: biotin/lipoyl attachment domain-containing protein;
KEGG: plt:Plut_1959 acetyl-CoA biotin carboxyl carrier"
/codon_start=1
/transl_table=11
/product="biotin carboxyl carrier protein"
/protein_id="YP_910727.1"
/db_xref="GI:119356083"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR001249"
/db_xref="InterPro:IPR001882"
/db_xref="InterPro:IPR002110"
/db_xref="GeneID:4570803"
/translation="MNLNEIKQLIDIVNSSDLQEAIIEEGDFKITLRRHPIAGLSYLQ
PAEQQNAPYSVTPPSLSREVASQTPESVAAPAANPKAEPMAGLIDVCSPIVGTFYRSS
SPDAPAFVNINDTVNKGDVLCIIEAMKLMNEIEAEMSGTIVEILVENGHPVEYDQPLF
RIKP"
misc_feature complement(266584..267072)
/locus_tag="Cpha266_0236"
/note="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated; Region: PRK06302"
/db_xref="CDD:180522"
misc_feature complement(266587..266805)
/locus_tag="Cpha266_0236"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(266662..266664,266683..266691,
266716..266718))
/locus_tag="Cpha266_0236"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(266686..266688)
/locus_tag="Cpha266_0236"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(267125..267691)
/locus_tag="Cpha266_0237"
/db_xref="GeneID:4570804"
CDS complement(267125..267691)
/locus_tag="Cpha266_0237"
/note="Involved in peptide bond synthesis; alters the
affinity of the ribosome for aminoacyl-tRNA"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_910728.1"
/db_xref="GI:119356084"
/db_xref="InterPro:IPR001059"
/db_xref="InterPro:IPR011768"
/db_xref="InterPro:IPR013185"
/db_xref="InterPro:IPR013852"
/db_xref="GeneID:4570804"
/translation="MTSISNVSKGSIIRFKGEPHIIESLIHRTPGNLRAFYQANMKNL
KTGRNVEFRFSASESVDVIVTERKPYQYLYKDGTDFVMMDSGTFDQINVPEITLGTSS
RFLKDGITVVIVFSDDGSILDVEMPTFVEVEVTETSPTTKDDRATSGTKPAIVETGAE
VGVPMFIQTGSIIRVDTRTGEYIERVKK"
misc_feature complement(267131..267691)
/locus_tag="Cpha266_0237"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:179058"
misc_feature complement(267512..267685)
/locus_tag="Cpha266_0237"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature complement(267338..267496)
/locus_tag="Cpha266_0237"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:88435"
misc_feature complement(order(267350..267352,267425..267427))
/locus_tag="Cpha266_0237"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88435"
misc_feature complement(267137..>267268)
/locus_tag="Cpha266_0237"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:88469"
misc_feature complement(order(267146..267151,267164..267166,
267215..267217))
/locus_tag="Cpha266_0237"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88469"
gene 267907..268182
/locus_tag="Cpha266_0238"
/db_xref="GeneID:4570805"
CDS 267907..268182
/locus_tag="Cpha266_0238"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: cte:CT0160 DNA-binding protein HU-beta"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_910729.1"
/db_xref="GI:119356085"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:4570805"
/translation="MSKAELVEKIASQAGLTKVDAERAVNAFMNVVTESLKEGEDVTL
VGFGTFTTGERAERQGRNPQNGETITIAAKKVVKFKPGKALKAGVEG"
misc_feature 267910..268167
/locus_tag="Cpha266_0238"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(267910..267918,267982..267984,268027..268029,
268033..268035,268039..268044,268051..268053,
268063..268065,268069..268074,268078..268080,
268087..268098,268126..268128,268138..268140,
268144..268146,268153..268155)
/locus_tag="Cpha266_0238"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(267910..267915,267922..267924,267931..267933,
267943..267945,267985..267987,267994..267999,
268006..268011,268021..268035,268042..268047,
268060..268062,268126..268131,268141..268143,
268147..268149)
/locus_tag="Cpha266_0238"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
gene 268272..269273
/locus_tag="Cpha266_0239"
/db_xref="GeneID:4570806"
CDS 268272..269273
/locus_tag="Cpha266_0239"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer composed of two alpha (AccA)
and two beta (AccD) subunits; one of the two catalytic
subunits that can form the acetyl CoA carboxylase enzyme
together with a carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyltransferase
subunit alpha"
/protein_id="YP_910730.1"
/db_xref="GI:119356086"
/db_xref="InterPro:IPR001095"
/db_xref="InterPro:IPR011763"
/db_xref="GeneID:4570806"
/translation="MANRVVLDFEKPLFELEAKLEEMRVYLRNSSRDQDSSDQDVLNR
EIEALEVKVETLRRSIYKNLTRWQKVQLARHAERPFTLDYIYMMTRDFVEMAGDRYFS
DDKAIVGGFAILEDIPSGFSQPVMIIGHQKGRDTKSNLYRNFGMAQPEGYRKALRLMK
LAEKFNKPVITLIDTPGAFPGIEAEERGQAEAIARNLFEMARLTVPVICVIVGEGASG
GAIGLGVGNRILMAENSWYSVISPESCSSILWRSWNYKEQAAEALQPTAEDLLAQGII
DRIIPEPMGGAHTDPEAMAGTLKEMLIEELRILMSKESDVLVRERVEKFSGMGVWDE"
misc_feature 268272..269270
/locus_tag="Cpha266_0239"
/note="acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional; Region: accA; CHL00198"
/db_xref="CDD:164574"
misc_feature 268275..269270
/locus_tag="Cpha266_0239"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:180223"
gene complement(269383..270411)
/locus_tag="Cpha266_0240"
/db_xref="GeneID:4570807"
CDS complement(269383..270411)
/locus_tag="Cpha266_0240"
/note="catalyzes the coenzyme A dependent formation of
succinyl-CoA from 2-oxoglutarate and ferredoxin"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate ferredoxin oxidoreductase subunit
beta"
/protein_id="YP_910731.1"
/db_xref="GI:119356087"
/db_xref="InterPro:IPR011766"
/db_xref="GeneID:4570807"
/translation="MTDTRAQLTAKDFTSNQEPKWCPGCGDFAVLQQLKNAMADLGLK
TEEVVVVSGIGCSSRLPYYIATYGVHGIHGRALAMASGLKTARPELSVWVGTGDGDAL
SIGGNHYIHTVRRNLDLNVILFNNEIYGLTKGQYSPTSKVGLRTVTSPNGVVDHPINT
AALTLGAGGTFFARVMDRDGKIMRDIFKRAAEHKGTSLIEIYQNCPIFNDGAFDPFTD
KDRKADTTLYLEQGKPLVFGKQNDKGIRLDGFTPVIVDLNNPSVSQNDLWIHDEKDFI
KANMLARFFDDPDASEDFLPRPFGIFYVEDRYTYESALSAQIEKAQENGEGTIEELLA
GSNTWTIA"
misc_feature complement(269389..270405)
/locus_tag="Cpha266_0240"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
beta; Reviewed; Region: PRK11867"
/db_xref="CDD:183348"
misc_feature complement(269773..270351)
/locus_tag="Cpha266_0240"
/note="Thiamine pyrophosphate (TPP family), 2-oxoglutarate
ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding
module; OGFOR catalyzes the oxidative decarboxylation of
2-oxo-acids, with ferredoxin acting as an electron
acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR;
cd03375"
/db_xref="CDD:73355"
misc_feature complement(order(270028..270030,270034..270036,
270112..270123,270193..270195))
/locus_tag="Cpha266_0240"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:73355"
gene complement(270415..272298)
/locus_tag="Cpha266_0241"
/db_xref="GeneID:4570808"
CDS complement(270415..272298)
/locus_tag="Cpha266_0241"
/note="PFAM: pyruvate ferredoxin/flavodoxin
oxidoreductase; pyruvate flavodoxin/ferredoxin
oxidoreductase domain protein;
KEGG: cte:CT0163 2-oxoglutarate ferredoxin oxidoreductase,
alpha subunit"
/codon_start=1
/transl_table=11
/product="pyruvate flavodoxin/ferredoxin oxidoreductase
domain-containing protein"
/protein_id="YP_910732.1"
/db_xref="GI:119356088"
/db_xref="InterPro:IPR002869"
/db_xref="InterPro:IPR002880"
/db_xref="GeneID:4570808"
/translation="MSETTILNREDMVTAKTSVSVLFAGDSGDGMQLTGTQFANTVAV
YGSDLNTFPNFPSEIRPPAGTVAGVSGFQLQFGTSSVYTPGAKFDVMIVMNAAALKAN
LNNLHHGGIIITDTDGFDAKNLKLSGYGEENNPLRDGTLNDYTVFEIPVVSLTRKALA
ETGLSTKNIDRCKNMFVLGVLYWLYSLPLETTIETLKTKFAKKLDLAEANIKAVTAGY
NFGDETEMFSQHGRFSVAPADKKPGVYRRVTGNEASAIGLAVAAKKAGLELFLGSYPI
TPATEILQTLAGLKKWGVKTFQAEDEIAGVLSSIGAAYGGALAATNTSGPGLALKSEG
LGLAVILEIPLVIINVMRGGPSTGLPTKPEQSDLLMAMYGRHGDAPMPVIAAKSPVDC
FYAAYEAAKIAVEYMTPVLCLTDGYLALSSEPMLVPSPDDLASITPVFSPARNADDPP
YLPYKRDDRAVRPWAKPGTPGLEHRIGGLEKQNETGNVSHDPENHELMTKLRAEKVAR
VADIIPDLTIDNGPESGDILVLGWGSTYGAIKKAVEQVLEGGCSVAHAHLRYINPFPK
NLGEVMGHYKKVLIPENNCGQLLSMIRDKFLIEPVGFSKVQGLPFNEMEIEAKITDIL
KEL"
misc_feature complement(270439..272247)
/locus_tag="Cpha266_0241"
/note="2-oxoacid:acceptor oxidoreductase, alpha subunit;
Region: OAFO_sf; TIGR03710"
/db_xref="CDD:211866"
misc_feature complement(271624..272244)
/locus_tag="Cpha266_0241"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, gamma subunit
[Energy production and conversion]; Region: PorG; COG1014"
/db_xref="CDD:31218"
misc_feature complement(271051..271551)
/locus_tag="Cpha266_0241"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature complement(order(271180..271185,271234..271239,
271276..271278,271288..271290,271297..271299,
271348..271350,271354..271356,271363..271371,
271375..271380,271399..271410,271447..271449,
271456..271458,271468..271470,271486..271491))
/locus_tag="Cpha266_0241"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(271288..271290,271297..271299,
271348..271350,271354..271356,271363..271371,
271375..271380,271399..271410,271447..271452,
271468..271470,271474..271479,271486..271491))
/locus_tag="Cpha266_0241"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(271393..271395,271474..271476))
/locus_tag="Cpha266_0241"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(271243..271245,271468..271470))
/locus_tag="Cpha266_0241"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
gene complement(272505..272774)
/locus_tag="Cpha266_0242"
/db_xref="GeneID:4570809"
CDS complement(272505..272774)
/locus_tag="Cpha266_0242"
/note="KEGG: plt:Plut_1953 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910733.1"
/db_xref="GI:119356089"
/db_xref="GeneID:4570809"
/translation="MSWGVEDEKRRKGVLELMELSSRIVKENPNHVNEVAKSTTGCWM
EQMYGMQRCDFCDLASDCPVREETEWQEYLRVNNIVIVKDNDNIT"
gene 273033..275699
/gene="alaS"
/locus_tag="Cpha266_0243"
/db_xref="GeneID:4570810"
CDS 273033..275699
/gene="alaS"
/locus_tag="Cpha266_0243"
/EC_number="6.1.1.7"
/note="Catalyzes a two-step reaction, first charging an
alanyl molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="alanyl-tRNA synthetase"
/protein_id="YP_910734.1"
/db_xref="GI:119356090"
/db_xref="InterPro:IPR002318"
/db_xref="InterPro:IPR003156"
/db_xref="InterPro:IPR012947"
/db_xref="GeneID:4570810"
/translation="MNSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQ
FKDVFLDKGTRPYVRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYK
KEAISWAWELLTSVWHLPKERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFW
EMGETGPCGPCSEIHIDLTEDGSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLP
QKHVDTGMGFERVCAVMQGKASNYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRV
LADHARTLTFALTDGAMPSNEGRGYVLRRILRRALRYSKTLGCSEPLLYRLVETLAAS
MGDVFPELRKQQQAVSRIIRAEEESFLATLDRGIEIFNELIAAVRSRGTTVVSGDDAF
RLYDTFGFPLDLTRLMAAEAGFEVDEEGFDRCMKEQKTRARQDRRDKQHLKGDEGEWT
WFSAERTSVFTGYHSLEELASITGVSIFSDRLLVVLDRTPFYAESGGQCGDRGWIETA
AYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQGT
ERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNE
QIRSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEIAGLSVELCGGTHVDSIG
QIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGRI
AELADSKKELEKQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSLRQAV
LALREKDPASTGLLCTEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFVRGGGGGK
PEFATAGGKDPEGIQKAFDSFAASVREKVSAK"
misc_feature 273033..275687
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="alanyl-tRNA synthetase; Reviewed; Region: alaS;
PRK00252"
/db_xref="CDD:178947"
misc_feature 273045..273746
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is responsible
for the attachment of alanine to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
AlaRS_core; cd00673"
/db_xref="CDD:29811"
misc_feature 273093..273107
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="motif 1; other site"
/db_xref="CDD:29811"
misc_feature order(273174..273176,273180..273182,273234..273236,
273297..273299,273303..273305,273309..273317,
273621..273626,273636..273638,273693..273698,
273708..273713,273720..273722)
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="active site"
/db_xref="CDD:29811"
misc_feature 273231..273239
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="motif 2; other site"
/db_xref="CDD:29811"
misc_feature 273705..273722
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="motif 3; other site"
/db_xref="CDD:29811"
misc_feature 275010..275138
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature 275463..275651
/gene="alaS"
/locus_tag="Cpha266_0243"
/note="DHHA1 domain; Region: DHHA1; pfam02272"
/db_xref="CDD:202185"
gene 275723..277081
/locus_tag="Cpha266_0244"
/db_xref="GeneID:4568950"
CDS 275723..277081
/locus_tag="Cpha266_0244"
/note="PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; pyridine nucleotide-disulphide
oxidoreductase dimerisation region;
KEGG: plt:Plut_1951 NADH oxidase, putative"
/codon_start=1
/transl_table=11
/product="FAD-dependent pyridine nucleotide-disulfide
oxidoreductase"
/protein_id="YP_910735.1"
/db_xref="GI:119356091"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4568950"
/translation="MKKNVDVLVIGGSAAGIVAASTGKAFYPLKNFLIVRREREAVVP
CGIPYIYGTLESINQNIIPNAHIEQAGVELFIDEVVAVDRGAKVATTADGTQITFDKL
VFATGSMPKVPAWLKGTGLGNVFTIPKDRDYLENLRMTLEQCTNIVIIGGGFIGVEIA
DELRKKGKRITLIEVMPHVLSAAFDDDLSVKVEKILTDNGVMLRTGEKVRELSGEGSV
SGVVLENGEILAADAVILATGYAPNVDLARNAGIKINELGAIRVDEYMRTEDKDIFAV
GDCAEKFSFITRIVKGLMLAATACSEARIAGMNLYGLSRLRTFSGTISIFSTAIGGTT
FAAAGVTEHLALDRGFDVISASAEGIDKHPKSLPGTSSQFVKLIVNRDSGLVLGGAVV
GGVSAGELINVIGVIIENKMTIHEVLTLQVGTHPLLTGPPTGYPLIKAAEAVVKKLRS
SR"
sig_peptide 275723..275785
/locus_tag="Cpha266_0244"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.870) with cleavage site probability 0.605 at
residue 21"
misc_feature 275855..276970
/locus_tag="Cpha266_0244"
/note="coenzyme A disulfide reductase; Reviewed; Region:
PRK09564"
/db_xref="CDD:181958"
misc_feature 276194..276403
/locus_tag="Cpha266_0244"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 277187..277681
/locus_tag="Cpha266_0245"
/db_xref="GeneID:4568951"
CDS 277187..277681
/locus_tag="Cpha266_0245"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: plt:Plut_1949 hypothetical protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_910736.1"
/db_xref="GI:119356092"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4568951"
/translation="MLVFDCFFGRCEKPSCEGCALKLVRSLRLALKSRAMQKDEEFAV
ETACSPEKPAMVALQAKTTSHKQDATKKRKRLLAPREEIPWYPTIKPELCNGCGDCKV
LCKPGVFELGAPDPSGIHRPKLVVAHPYKCLVLCTRCVPICTSGAIILPPKEDFERFV
EYLD"
misc_feature 277439..277660
/locus_tag="Cpha266_0245"
/note="Ferredoxin [Energy production and conversion];
Region: COG1146"
/db_xref="CDD:31341"
gene 277733..278035
/locus_tag="Cpha266_0246"
/db_xref="GeneID:4568952"
CDS 277733..278035
/locus_tag="Cpha266_0246"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: cte:CT0168 ferredoxin, 4Fe-4S, putative"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_910737.1"
/db_xref="GI:119356093"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:4568952"
/translation="MSGLPSPSKKKKRLLAPREEIAWFPVIDTAACNGCGDCEGFCKP
GVFALGEPEGVKRARMTVANPWNCIVLCTRCEPVCPSGAITLPRPEDFERFVEYVD"
misc_feature 277799..278014
/locus_tag="Cpha266_0246"
/note="Ferredoxin [Energy production and conversion];
Region: COG1146"
/db_xref="CDD:31341"
misc_feature <277820..>277978
/locus_tag="Cpha266_0246"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
gene complement(278091..279047)
/locus_tag="Cpha266_0247"
/db_xref="GeneID:4568953"
CDS complement(278091..279047)
/locus_tag="Cpha266_0247"
/note="PFAM: HipA domain protein;
KEGG: pgi:PG0859 hypothetical protein"
/codon_start=1
/transl_table=11
/product="HipA domain-containing protein"
/protein_id="YP_910738.1"
/db_xref="GI:119356094"
/db_xref="InterPro:IPR012893"
/db_xref="InterPro:IPR012894"
/db_xref="GeneID:4568953"
/translation="MDRRCLYCYEPLASGEGDFHRKCSRKMFGTPLPPELPYDENQLE
ELALEVIRSQTAITGVQPKLSLHLEPAGKAHAPQRFTIVGLWGGYILKPPSQRFRQLP
EIEDLTMRMAEAARIDTVPHSLIRMRSGALAYLTRRIDRTGNGKLHMEDMCQITGRLT
ENKYHGSYEQIAKAIHRYSANPGLDVINFFEVVLFCFLSGNADMHLKNFSLIDIEAKG
GYSLAPAYDLVSTGLVMPSDKEDLALTLDGKKTRITLNDFRAAFGVLTIDEVVQERMF
RKFRNVLPLWDLLIEKSFLDYENQAAYKELIRKKCHQIRLDA"
misc_feature complement(278298..>278957)
/locus_tag="Cpha266_0247"
/note="Toxin module HipA, protein kinase of
phosphatidylinositol 3/4-kinase superfamily [General
function prediction only]; Region: HipA; COG3550"
/db_xref="CDD:33352"
misc_feature complement(278625..278879)
/locus_tag="Cpha266_0247"
/note="HipA-like N-terminal domain; Region: HipA_N;
pfam07805"
/db_xref="CDD:203767"
misc_feature complement(278367..278612)
/locus_tag="Cpha266_0247"
/note="HipA-like C-terminal domain; Region: HipA_C;
pfam07804"
/db_xref="CDD:203766"
gene complement(279052..279375)
/locus_tag="Cpha266_0248"
/db_xref="GeneID:4568954"
CDS complement(279052..279375)
/locus_tag="Cpha266_0248"
/note="KEGG: pgi:PG0858 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910739.1"
/db_xref="GI:119356095"
/db_xref="GeneID:4568954"
/translation="MQKAEIRYLDRTAGWFIQDEEGFHFLYDQAYLDSKDARPVSLTL
PLRAAAYSSRTMFPFFDGLIPEGWLLAVAERNWKLDPRDRMGLLLNCCRDCIGAVSVH
PVIME"
misc_feature complement(279070..279366)
/locus_tag="Cpha266_0248"
/note="HipA N-terminal domain; Region: Couple_hipA;
pfam13657"
/db_xref="CDD:205834"
gene complement(279379..279585)
/locus_tag="Cpha266_0249"
/db_xref="GeneID:4568955"
CDS complement(279379..279585)
/locus_tag="Cpha266_0249"
/note="PFAM: helix-turn-helix domain protein;
KEGG: pgi:PG0857 transcriptional regulator, putative"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_910740.1"
/db_xref="GI:119356096"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:4568955"
/translation="MKDIAEFVRDRRKALGMTQPELAEKAGTGLRFIRDLEQGKKTLR
MDKVNQVLALFGFVLAPVSPEREA"
misc_feature complement(279418..279573)
/locus_tag="Cpha266_0249"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(279472..279474,279547..279549,
279559..279561))
/locus_tag="Cpha266_0249"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(279475..279477,279550..279552))
/locus_tag="Cpha266_0249"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(279469..279474,279484..279486,
279493..279495,279526..279531))
/locus_tag="Cpha266_0249"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene complement(279920..281137)
/locus_tag="Cpha266_0250"
/db_xref="GeneID:4568956"
CDS complement(279920..281137)
/locus_tag="Cpha266_0250"
/EC_number="3.1.3.3"
/note="KEGG: cte:CT0173 phosphoserine phosphatase;
TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily
hydrolase, subfamily IB (PSPase-like);
PFAM: amino acid-binding ACT domain protein; Haloacid
dehalogenase domain protein hydrolase; Haloacid
dehalogenase domain protein hydrolase, type 3"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase"
/protein_id="YP_910741.1"
/db_xref="GI:119356097"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR004469"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006383"
/db_xref="InterPro:IPR013200"
/db_xref="GeneID:4568956"
/translation="MSELLLINLTGLDKPGLTSKITAILADARVPVLDIGQAVIHNHL
SLGMLVEVPKESASSPVLKDLLFCAHTLGIQISFTPVADEEYDRWVGEQGKPRYLLSL
LSRKISAEQLKRVSSIVAEHDLNIDTISRLSGRIPLDNGDNHTRACVEFSLRGTLSDE
NLFREQLLAITDSLGIDIAFQEDNIFRRNRRMVVFDMDSTLITSEVIDELALEAGVGE
EVSAITEQAMRGELDFNESLQRRVAQLKGLDEHVMESIAARLQLTEGAERLFGNLKRL
GYKTAILSGGFTYFGHYLQKKLSIDYVYANTLEIENGCLTGRVLGRVVDGARKAELLE
LLAEKENISLEQTVAVGDGANDLPMLGKAGLGIAFRAKPIVRERAKQAISTLGLDAIL
YLMGFRDRDELSE"
misc_feature complement(280898..281122)
/locus_tag="Cpha266_0250"
/note="CT domains found N-terminal of phosphoserine
phosphatase (PSP, SerB); Region: ACT_PSP_1; cd04870"
/db_xref="CDD:153142"
misc_feature complement(280592..280843)
/locus_tag="Cpha266_0250"
/note="ACT domains found N-terminal of phosphoserine
phosphatase (PSP, SerB); Region: ACT_PSP_2; cd04871"
/db_xref="CDD:153143"
misc_feature complement(279953..280609)
/locus_tag="Cpha266_0250"
/note="phosphoserine phosphatase SerB; Region: serB;
TIGR00338"
/db_xref="CDD:161826"
misc_feature complement(<280523..>280561)
/locus_tag="Cpha266_0250"
/note="viral phosphatase superfamily protein; Provisional;
Region: PHA03398"
/db_xref="CDD:177634"
misc_feature complement(280031..280396)
/locus_tag="Cpha266_0250"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(280286..280288)
/locus_tag="Cpha266_0250"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 281769..282989
/locus_tag="Cpha266_0251"
/pseudo
/db_xref="GeneID:4568957"
gene complement(283296..283586)
/locus_tag="Cpha266_0252"
/db_xref="GeneID:4568958"
CDS complement(283296..283586)
/locus_tag="Cpha266_0252"
/note="KEGG: mhu:Mhun_0714 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910742.1"
/db_xref="GI:119356098"
/db_xref="GeneID:4568958"
/translation="MIFSFHPEAKEEFDKAIEYYENIAPGLGYDFALEVHSAIKRSIE
HPNAWAVLYEDVRRSLVRRFPYGVLYSKEPAEIFILAVMNLHRNPGYWKKRK"
misc_feature complement(283326..283574)
/locus_tag="Cpha266_0252"
/note="Plasmid stabilisation system protein; Region:
Plasmid_stabil; cl11422"
/db_xref="CDD:212315"
gene complement(283583..283807)
/locus_tag="Cpha266_0253"
/db_xref="GeneID:4568959"
CDS complement(283583..283807)
/locus_tag="Cpha266_0253"
/note="TIGRFAM: putative addiction module component,
TIGR02574 family;
KEGG: swo:Swol_1551 hypothetical protein"
/codon_start=1
/transl_table=11
/product="addiction module proein"
/protein_id="YP_910743.1"
/db_xref="GI:119356099"
/db_xref="InterPro:IPR013406"
/db_xref="GeneID:4568959"
/translation="MNTKQLIDKAVSLPVEERALVVDSLLRSLNQPESEIDKKWSQEA
KRRLAELRSGQVQAIPGDEVFAEVWKKFES"
misc_feature complement(283613..283774)
/locus_tag="Cpha266_0253"
/note="Putative addiction module component; Region:
Unstab_antitox; pfam09720"
/db_xref="CDD:204291"
gene complement(283850..285070)
/locus_tag="Cpha266_0254"
/db_xref="GeneID:4568960"
CDS complement(283850..285070)
/locus_tag="Cpha266_0254"
/note="PFAM: transposase, IS204/IS1001/IS1096/IS1165
family protein;
KEGG: cch:Cag_1580 transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS204/IS1001/IS1096/IS1165 family
protein"
/protein_id="YP_910744.1"
/db_xref="GI:119356100"
/db_xref="InterPro:IPR002560"
/db_xref="GeneID:4568960"
/translation="MNDLTLFQMALGLESPWYVSSSSFDVDQKRLDIRIDFKPGSTFC
CPQCGREGVKAYDTSEATWRHLNFFQHEAYLTVRVPRISCPECGILKLQSFPWSRRES
GFTLLFEAMIMIMAKSMPVKAIAAIVGEHDTRIWRIINHYVEKAREQEDHSAVTMVGV
DETSSKRGHNYVSLFVDLAVSKVLFATEGKDAATVKRFSEDLAAHKGDPALITEFCSD
MSPAFIKGVADNFTNAQLTFDKFHIMQVINNAVDEVRRQEQKERPELQRSRYIWLKNQ
NNLKASQRKRLDELSLPRLNLKTTRAYRMRLTFQEFFEQPQVLVEAFLKKWYFWATHS
QLQPMKEAAYTIKRHWSGILRWFTSRINNGVLEGINSLIQAAKARARGYRTTKNLINM
IYLISGKLNFGLPT"
misc_feature complement(283886..285064)
/locus_tag="Cpha266_0254"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3464"
/db_xref="CDD:33267"
misc_feature complement(283892..284599)
/locus_tag="Cpha266_0254"
/note="Transposase; Region: DDE_Tnp_ISL3; pfam01610"
/db_xref="CDD:201887"
gene 285748..286614
/locus_tag="Cpha266_0255"
/db_xref="GeneID:4568961"
CDS 285748..286614
/locus_tag="Cpha266_0255"
/note="PFAM: protein of unknown function DUF1568;
KEGG: pca:Pcar_1084 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910745.1"
/db_xref="GI:119356101"
/db_xref="InterPro:IPR011462"
/db_xref="GeneID:4568961"
/translation="MGSVVLKTETNIYAWALMTNHAHILLKSGQPGLSAFMRKFLIGY
SISYNRRHDRHGHLFQNRYKSIVCEEDACFLKLVSYIHLNPLWAGLVRSFEELEHYPW
SGHAAVMGRKAYDWQDSDYVLGYFGKRVGSARTAYLECMQQEGKLSRQPELTGGGLIR
SAGGWSEVLSMKRRGERQFSDDRILGSGDFAQEVIAEADASVREKVSLAKRRSEVIEM
IERCCARHGVSRQSLESGCRRKEFSEIRKELAMMLVFETGLSYAETAPLLGVSASAVC
QIIKTGTDSCRM"
misc_feature <285781..286023
/locus_tag="Cpha266_0255"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(286831..286971)
/locus_tag="Cpha266_0256"
/pseudo
/db_xref="GeneID:4568962"
gene 287225..288241
/locus_tag="Cpha266_0257"
/db_xref="GeneID:4568963"
CDS 287225..288241
/locus_tag="Cpha266_0257"
/note="TIGRFAM: integron integrase;
PFAM: phage integrase family protein;
KEGG: dar:Daro_3427 integron integrase"
/codon_start=1
/transl_table=11
/product="integron integrase"
/protein_id="YP_910746.1"
/db_xref="GI:119356102"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR011946"
/db_xref="GeneID:4568963"
/translation="MVADSQTVLQSTVNSQSLQHGPKLLELFREAMRVRHYSRRTEET
YCSWVKRYVHFHNMRHPKEMREPEINAFLTHLAVEEKVSASTQNQALSALLFLYRHVI
GKEIGDLGHLIRARKPSHLPVVLTRDEVKALLVQLAGVKWLMASLMYGAGLRLMECLR
LRVQDIDFSSNEILVRDGKGAKDRITMLPESLKKPLADHLKQIKSLHDKDLAEGWGRV
LLPGALDRKYPNAPAEWRWQWVFPQEHRWKNAKTGEEGRHHMDESLIQKAVKAAVFHA
QLTKRATCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHVLNRGPSGVRSP
VDCL"
misc_feature 287294..288238
/locus_tag="Cpha266_0257"
/note="integron integrase; Region: integrase_gron;
TIGR02249"
/db_xref="CDD:131303"
misc_feature 287387..288193
/locus_tag="Cpha266_0257"
/note="IntI (E2) integrases, site-specific tyrosine
recombinases, DNA breaking-rejoining enzymes, N- and
C-terminal domains. This CD includes integrases which are
components of multiresistant integrons and mediate
recombination between a proximal attI site and...; Region:
INT_IntI; cd01193"
/db_xref="CDD:29514"
misc_feature order(287684..287686,287759..287761,288077..288079,
288086..288088,288155..288157,288182..288184)
/locus_tag="Cpha266_0257"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29514"
gene 288424..288852
/locus_tag="Cpha266_0258"
/db_xref="GeneID:4568964"
CDS 288424..288852
/locus_tag="Cpha266_0258"
/note="KEGG: pca:Pcar_0806 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910747.1"
/db_xref="GI:119356103"
/db_xref="GeneID:4568964"
/translation="MNNELRTKLIATALEWQDRYGVAPQITTPLSEYDAAMLVGMPEH
EYSAYMQDITAVNKGSDFIYRNVRYQVKGNRPSGKPGSKVTMVPKATNYEWDKLIWVL
YDKFYVIQEAWLWDVAEYKQKFHNIKRLSPSHYREGVQLA"
gene 289090..289329
/locus_tag="Cpha266_0259"
/db_xref="GeneID:4568965"
CDS 289090..289329
/locus_tag="Cpha266_0259"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910748.1"
/db_xref="GI:119356104"
/db_xref="GeneID:4568965"
/translation="MVKLDYADYKFTVKEGSPSVSGADDAPVSLCCEPRTSELSIVGS
GHLSIHLKKGISCDDAQEIAKNLEQWIEKISYVKG"
gene 289482..289934
/locus_tag="Cpha266_0260"
/db_xref="GeneID:4568966"
CDS 289482..289934
/locus_tag="Cpha266_0260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910749.1"
/db_xref="GI:119356105"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4568966"
/translation="MKSSLIRFAIILFVFLSGCGTKEEPTAQEIAEAQLKETPAYKDY
SADANTAFLIEVKERLKAPSGADFPWDDLPKEVTTKGVKLSDMSPYLRKVIKEARKLK
KENAVRVYQKDSYVDADNSFGAKIRQRYLGTFIIYTEFGYTKSFVEFY"
sig_peptide 289482..289550
/locus_tag="Cpha266_0260"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.786) with cleavage site probability 0.671 at
residue 23"
gene 289980..290132
/locus_tag="Cpha266_0261"
/pseudo
/db_xref="GeneID:4568967"
gene complement(290524..291930)
/locus_tag="Cpha266_0262"
/db_xref="GeneID:4568968"
CDS complement(290524..291930)
/locus_tag="Cpha266_0262"
/note="PFAM: transposase, IS4 family protein;
KEGG: mes:Meso_4308 transposase, IS4"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910750.1"
/db_xref="GI:119356106"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4568968"
/translation="MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNA
TSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYEDGN
DSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSY
TEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGR
RPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGG
NDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWKETRRVVAKVEMTEKGLNVRFIS
TDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYV
LVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKC
FAVLEHLRSVPWPSTAIP"
misc_feature complement(290548..291852)
/locus_tag="Cpha266_0262"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:205876"
gene 292108..292848
/locus_tag="Cpha266_0263"
/db_xref="GeneID:4568969"
CDS 292108..292848
/locus_tag="Cpha266_0263"
/note="KEGG: pol:Bpro_3899 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910751.1"
/db_xref="GI:119356107"
/db_xref="GeneID:4568969"
/translation="MIIQDYSEHIENFENYLKSKLASIDEISGDNNVLFKKILYVSFL
DSLSSCVYPGRGNKERFVSMLERFSKWEDRDRVSLPHLGKFVQIISDPLLEQARKYVT
PKLKTWQERSCYVISISEDPIIDEILDKSWKTNKETGIHVSLTDFKHISLLYQLRNAL
VHQFQSRGDEMGNLRQLDHPYYQRVQIFNGTLEDMKPVRFELVYPTQFLKSLSEKTLE
NVVDYLKDGNINPFPHYYAGDYWITELN"
gene 292938..293210
/locus_tag="Cpha266_0264"
/db_xref="GeneID:4568590"
CDS 292938..293210
/locus_tag="Cpha266_0264"
/note="KEGG: gme:Gmet_2499 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910752.1"
/db_xref="GI:119356108"
/db_xref="GeneID:4568590"
/translation="MPTISMFYGILIRMFFRDAEKHHVPHIHADYQGNVAVYSIPEGT
LLAGLLPPNKHKLVVAWIEIHHEDLLADWNLAVNGKKPFPIKGLDQ"
misc_feature 292962..293159
/locus_tag="Cpha266_0264"
/note="Domain of unknown function (DUF4160); Region:
DUF4160; pfam13711"
/db_xref="CDD:205886"
gene 293207..293464
/locus_tag="Cpha266_0265"
/db_xref="GeneID:4568591"
CDS 293207..293464
/locus_tag="Cpha266_0265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910753.1"
/db_xref="GI:119356109"
/db_xref="GeneID:4568591"
/translation="MRIAELHPQPDWVLSIVSEDGRVGRFDVTPYLEYEAFEELRDHG
EFIKVINGGYFVEWECGADLSADTIEAQWKVVGKAEQQNTV"
misc_feature 293213..293419
/locus_tag="Cpha266_0265"
/note="Protein of unknown function (DUF2442); Region:
DUF2442; pfam10387"
/db_xref="CDD:204470"
gene 293727..294203
/locus_tag="Cpha266_0266"
/db_xref="GeneID:4568592"
CDS 293727..294203
/locus_tag="Cpha266_0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910754.1"
/db_xref="GI:119356110"
/db_xref="GeneID:4568592"
/translation="MSDVYAELFSIKFLVMSVIVGTALSIAANILSHSIIQNRSKFRW
KAGLPLYVGTMVYLWFVLELLSSSSTDRPFGIAFSINAIYLVVSCFRASLQVTSFSAV
TKTAVYLQVAIFVLTLPFTDAFWGPQSADVEASIAFNGIIIAALMFMTKGYREGGV"
misc_feature 293838..>293954
/locus_tag="Cpha266_0266"
/note="Glucuronate isomerase; Region: UxaC; cl00829"
/db_xref="CDD:207213"
gene 294586..295170
/locus_tag="Cpha266_0267"
/db_xref="GeneID:4568593"
CDS 294586..295170
/locus_tag="Cpha266_0267"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910755.1"
/db_xref="GI:119356111"
/db_xref="GeneID:4568593"
/translation="MHGAVYIFENSIAKRVKVGMTINNVADRLCDVNDKWLERKVACQ
ICGGRLVNIGGYVPQHVISGNECPGGNALPLEKDLALAVSYLENMKNRLSKLSGSEKG
SVTRKIKTLEKRIGLYRHYDGPVGMWQFSIAFYTECAEQVELLSHKILTERLDKVAPF
GEVFCCSVSEATEAVEAALSQLGLLHSARKNTCL"
gene 295418..296188
/locus_tag="Cpha266_0268"
/db_xref="GeneID:4568594"
CDS 295418..296188
/locus_tag="Cpha266_0268"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910756.1"
/db_xref="GI:119356112"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4568594"
/translation="MRIITRVAILLLIVGIQGCATYGKISGIPSEGQKSVFKDGRKTL
ISIKQNTVALAPNTETVTSGQKADFVIAVHNGTSQDILFSTDDVTATANTNGQLTTLK
VFSYDELVAEEKNRRAWAAVAVGLQGAAESMNAANAGYSNAFGTYSGSTYSNYGTKTF
SSGSYSSTTYNYAAAQAARNVAQANTEARFARLEADGRENLKNLSSTTLKKETIFPAA
WHGGLIKVELPEVAEQLQDIKFVVNVVGEQHEFNLNNS"
gene complement(296448..297854)
/locus_tag="Cpha266_0269"
/db_xref="GeneID:4568595"
CDS complement(296448..297854)
/locus_tag="Cpha266_0269"
/note="PFAM: transposase, IS4 family protein;
KEGG: mes:Meso_4308 transposase, IS4"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910757.1"
/db_xref="GI:119356113"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4568595"
/translation="MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNA
TSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYEDGN
DSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSY
TEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGR
RPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGG
NDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWKETRRVVAKVEMTEKGLNVRFIS
TDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYV
LVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKC
FAVLEHLRSVPWPSTAIP"
misc_feature complement(296472..297776)
/locus_tag="Cpha266_0269"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:205876"
gene 298718..298981
/locus_tag="Cpha266_0270"
/db_xref="GeneID:4568596"
CDS 298718..298981
/locus_tag="Cpha266_0270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910758.1"
/db_xref="GI:119356114"
/db_xref="GeneID:4568596"
/translation="MEPFIAVISHDNRARLLNNNIALQNIKIVLFQEPSKTGAGKITE
RQASGAGRISVVCSVVIGWLVLYYFDGSTLFCYTFSKRLLRCV"
gene 299402..300049
/locus_tag="Cpha266_0271"
/db_xref="GeneID:4568597"
CDS 299402..300049
/locus_tag="Cpha266_0271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910759.1"
/db_xref="GI:119356115"
/db_xref="GeneID:4568597"
/translation="MDEKLKLITSSLAVVAAFIGLIVSVISLVRSSENKQSIVVVTQQ
VANVEKQVKDVLIKSKEVVIAFNDVGAIKHIIKDIPSTPYPPYHDRSRIRPSSDIPVY
SFPTATISFAQGVHFNKYRITFAWQYHADSNYDPATVEFKVKYPADAHTPSRIETVSK
SYQEPLKIWQTATVEINVPKGIPPESLQIFVPQSGDFDFMIKDMHVEALFGEYDL"
sig_peptide 299402..299497
/locus_tag="Cpha266_0271"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.796) with cleavage site probability 0.411 at
residue 32"
gene 300217..301065
/locus_tag="Cpha266_0272"
/db_xref="GeneID:4568598"
CDS 300217..301065
/locus_tag="Cpha266_0272"
/note="KEGG: bth:BT0082 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910760.1"
/db_xref="GI:119356116"
/db_xref="GeneID:4568598"
/translation="MLRNPVWCYTSGWCSAMFAEGDLAVISIKKLTSMKVKSSKKSRS
DLANSLSAHLKSFGEKYEDIVICPTCLGEFSVKADQEKFSAGHILPEVAGGQEWTFIC
RSCNSRFGEKQDKWFGEYLHILNIPTGTFLDAKTKNKYISINGEVVRGDISVRDDGSV
EVFVPIDRNPPGKVKSIPKGPKLELSFKPVLIDHENEIEIGYITAAYLIWFHEIGYNW
VFQSSLDVVRKQILECDRSLNGAKVIDLDFDKSPVEGVGAVLQSDTLYPCCVVVDKLV
VIGKQE"
misc_feature 300415..300597
/locus_tag="Cpha266_0272"
/note="HNH endonuclease; Region: HNH_5; pfam14279"
/db_xref="CDD:206447"
gene 301160..302731
/locus_tag="Cpha266_0273"
/db_xref="GeneID:4568599"
CDS 301160..302731
/locus_tag="Cpha266_0273"
/note="PFAM: Integrase, catalytic region;
KEGG: bfs:BF1534 putative transposase for insertion
sequence element IS21-like"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_910761.1"
/db_xref="GI:119356117"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:4568599"
/translation="MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRM
TDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTR
TIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRG
AILYTEAFRKYLLHRSLKIHLCRKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQ
EALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNT
ISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNN
HRRDTSSKLRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQK
LIDDALAHCVDHHLFSSGEFHDILHHYRKQEEKQSHQAVFNTFRPKTLRSDMDRMLSF
VPDSSGITTYENIFS"
misc_feature 301214..302053
/locus_tag="Cpha266_0273"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature 301628..301936
/locus_tag="Cpha266_0273"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 302737..303573
/locus_tag="Cpha266_0274"
/db_xref="GeneID:4568600"
CDS 302737..303573
/locus_tag="Cpha266_0274"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: bfs:BF1535 insertion sequence IS21-like putative
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="IstB ATP binding domain-containing protein"
/protein_id="YP_910762.1"
/db_xref="GI:119356118"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4568600"
/translation="MERTITTIQEHARELNLTGLAGTVDLLLEEARKSEPSYSDFALT
LLESELSCRRKAHLERRRKIANLPLLHDLDHYDSGVQNGISQVQLQQLRQLLWLDQNF
NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRL
LSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLA
TALLDRLLYKCEVIKLTGKSYRLEHRTTIFEQQQSPEGGGNRRKKQLPLQKGVGNHCK
MT"
misc_feature 302770..303468
/locus_tag="Cpha266_0274"
/note="transposase; Provisional; Region: PRK06526"
/db_xref="CDD:180607"
misc_feature 303043..303351
/locus_tag="Cpha266_0274"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 303058..303081
/locus_tag="Cpha266_0274"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(303061..303084,303241..303243,303340..303342)
/locus_tag="Cpha266_0274"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 303229..303246
/locus_tag="Cpha266_0274"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 304390..305262
/locus_tag="Cpha266_0275"
/db_xref="GeneID:4568601"
CDS 304390..305262
/locus_tag="Cpha266_0275"
/note="PFAM: SEFIR domain protein;
KEGG: shm:Shewmr7_1857 SEFIR domain protein"
/codon_start=1
/transl_table=11
/product="SEFIR domain-containing protein"
/protein_id="YP_910763.1"
/db_xref="GI:119356119"
/db_xref="InterPro:IPR000157"
/db_xref="InterPro:IPR013568"
/db_xref="GeneID:4568601"
/translation="MQDKRLTYTKSDAADRLYEGYNRLLADSDPEVILPLVQHMASEV
FPDFTAMQAFYSFACMEEKRFLKKAEVIELIPKYWSKVPEDMRPDIKYFLENIALAPR
VFISYSHDSQQHKAWVLKLATHLSQAGIDIVFDQWDIEPGSDVALFMEQGIEKSDRVV
LVITEKYVEKTKRNDSGTGYERMIITGQLAQELDTHKFIPITRQTLGKIKLPVFLGNR
LYVDFSDDELFEDSCHRLLRTLHGEPEVARPSVGPNPFLKQRHEAAQQSTHSSSDSQN
NSTISASDDEILTE"
misc_feature 304696..305055
/locus_tag="Cpha266_0275"
/note="TIR domain; Region: TIR_2; pfam13676"
/db_xref="CDD:205852"
gene 305551..306744
/locus_tag="Cpha266_0276"
/db_xref="GeneID:4568602"
CDS 305551..306744
/locus_tag="Cpha266_0276"
/note="KEGG: xcv:XCVd0072 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910764.1"
/db_xref="GI:119356120"
/db_xref="GeneID:4568602"
/translation="MSEGLTESEKFVNSISERAFLHLWTHPNPIGKKGKELCDCLIVC
GNHIVIISVKDIKYKDTGDEAGWKRWTKAAIDKSASQIWGAERWLDSSVEFTRHDGRK
VELPPKENRIVHRISVSLGAQRKIPTKSGDLGNGIVHVCDEFSLGAIFGLLDTITDFV
SFLTEVEALINRANIVFNGGGIEDLLAIYLLNNHSFPYDEADLIIIEDTVFRGFIDSD
DYKAIQESYKDSYFWDKLIEHFVGDLLTDGMFEYGTNQVTDNQLALVQMALQPRGHRA
NLVDAFSEFLQKPELKIAARVILAYKNTAFVFHLGPSSDREARVQELGLRCLVVRGRL
PDVKIVVGISRDKLGPSEVGYSHDIAYVEIPEWNDDFEEQVTKIQKELGYFENTSCTK
RPENA"
gene 306836..307525
/locus_tag="Cpha266_0277"
/db_xref="GeneID:4568603"
CDS 306836..307525
/locus_tag="Cpha266_0277"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910765.1"
/db_xref="GI:119356121"
/db_xref="GeneID:4568603"
/translation="MKDIITEFDRPIVFRTVNAEVYESTINSGSIWLRSSDYYVYLED
KARCDKSEGANGTKTLLPLCFHPEGGTKQIYYGDGIIGQKISPHYIFSMHGSSVSECV
RKDFGEFTFGIKCISRLSAEILYEASKYLNVTGYRFGQVSYQYTALCRSLHSHGAAVG
LGGNLPEFLQSINTDVLRKDPVLPFIEQDEWRIVIFTNSLIKNDYNEPLKLIVNPNNF
YEYKSSAKLNA"
gene 307601..308236
/locus_tag="Cpha266_0278"
/db_xref="GeneID:4568604"
CDS 307601..308236
/locus_tag="Cpha266_0278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910766.1"
/db_xref="GI:119356122"
/db_xref="InterPro:IPR000183"
/db_xref="GeneID:4568604"
/translation="MENQLPRIRDEAAYQQAMREWVVPECLHVPVVAVDEEAIKDHVG
DIVEILSPGRALVVAIYPPRERDFRLPIWAYPSANVFFEPIQVWVNPSYTRYRQAYVR
AKGADSVSGKVLAHVYNRRMAMLRGYGFVRLVPVSRRANSSSSFTEQWGIKLAAEDFG
ARRLKRGLRMQYADLGDLLVMLDISLGGGVQDTCRLGQNLIEIPGRRPPQE"
gene 308731..308931
/locus_tag="Cpha266_0279"
/pseudo
/db_xref="GeneID:4568605"
gene 309191..309961
/locus_tag="Cpha266_0280"
/db_xref="GeneID:4568606"
CDS 309191..309961
/locus_tag="Cpha266_0280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910767.1"
/db_xref="GI:119356123"
/db_xref="GeneID:4568606"
/translation="MEGRTMTWLKIIGAVVLLWTLTNFFLRYYEYSVFIYLFRFLGNY
RQIAHIFIRTDYWGDHREGNRREEYAALRRHEIAERFLIKGGSKAVTGILAELKKTNN
EYIRTHLAELIIKIGDTKALPDIEELFNRGAFHSSYGPGGSPIEQFLQSNSPSYRQKR
NKEEEESSAKLVQATDMVKDLSDDQMMDILKRLCRAYSVNDESEIKNIEPIAIAIGRK
LNQRGGLKAMRELYDKIGNIKGTRSLDMHWNGIGDWQG"
gene 310485..311354
/locus_tag="Cpha266_0281"
/db_xref="GeneID:4568607"
CDS 310485..311354
/locus_tag="Cpha266_0281"
/note="PFAM: Abortive infection protein;
KEGG: nar:Saro_2395 abortive infection protein"
/codon_start=1
/transl_table=11
/product="abortive infection protein"
/protein_id="YP_910768.1"
/db_xref="GI:119356124"
/db_xref="InterPro:IPR003675"
/db_xref="GeneID:4568607"
/translation="MTTISNSEPGIARSILSSPPARVLVLGFILLVMMGLNTDVMTSY
AGEPAKSVLHIMALAIAGISVYLGYAYFIEERDVYELAVPGMGRELGIGLLIGAGLYA
LSELILMALGIYRIDGLNPLSYMVPAIAMAQSSGIYEELLFRGVLFRSVETWLGSWAA
LVVSSLVFGLTHLMNPHATIEGALFIAVEAGILLAAAYMLTHRLWLSMGFHVAWNYTQ
SAIFSGIVSGNEASQGLVRSTIKGPDFLTGGSFGVESSVLALLLCTTTGIVMLVMASK
RGNIVPPVWKRAA"
misc_feature 310845..311135
/locus_tag="Cpha266_0281"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:202269"
gene 312094..312396
/locus_tag="Cpha266_0282"
/db_xref="GeneID:4568608"
CDS 312094..312396
/locus_tag="Cpha266_0282"
/note="KEGG: cte:CT1655 ferredoxin, 2Fe-2S"
/codon_start=1
/transl_table=11
/product="ferredoxin, 2Fe-2S"
/protein_id="YP_910769.1"
/db_xref="GI:119356125"
/db_xref="GeneID:4568608"
/translation="MQKQREMPYVAHVFVCTNDRGGEKKSCADNNSQLTKARLKQAVD
EKGWRGKVRISTSGCMGLCSNGSHVMIYPQKVWFSGVLPDDVDEIVSAIERILADD"
misc_feature 312124..312372
/locus_tag="Cpha266_0282"
/note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd)
family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like
Fds) and proteins containing domains similar to TRX-like
Fd including formate dehydrogenases, NAD-reducing
hydrogenases and the subunit E of NADH:...; Region:
TRX_Fd_family; cd02980"
/db_xref="CDD:48529"
misc_feature order(312127..312129,312133..312135,312259..312267)
/locus_tag="Cpha266_0282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48529"
misc_feature order(312139..312141,312172..312174,312268..312270,
312280..312282)
/locus_tag="Cpha266_0282"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:48529"
gene complement(312684..313556)
/locus_tag="Cpha266_0283"
/db_xref="GeneID:4570773"
CDS complement(312684..313556)
/locus_tag="Cpha266_0283"
/note="KEGG: bps:BPSL0088 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910770.1"
/db_xref="GI:119356126"
/db_xref="GeneID:4570773"
/translation="MNNISINISGRIDPERVTLLRDIKEVADGLAIHFFVVGAFARDL
NFEHIHHIPAPRVTEDIDIGVEVADWETFRYLTDSLIDRDILKPTKSAHRFTGNSPAI
VVDIIPYGGISNELKKISWPPDHRIIMSMLGFEEAFQSAMAVCLETEPLLEILVPSVP
ALTVMKIISWNDAYPNRNRDARDILFILENYHVIVSEYLYEPPAVLLEEEAFDLCLAS
VRLLGRKIAQLCSKITKETIVIILDRESEENGEVKMLSQMGSAGSFQTKQFENSLKLL
KKLLQGIREETTKV"
misc_feature complement(312792..313520)
/locus_tag="Cpha266_0283"
/note="Nucleotidyl transferase of unknown function
(DUF1814); Region: DUF1814; cl00973"
/db_xref="CDD:207266"
gene complement(313519..314508)
/locus_tag="Cpha266_0284"
/db_xref="GeneID:4570774"
CDS complement(313519..314508)
/locus_tag="Cpha266_0284"
/note="KEGG: bps:BPSL0089 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910771.1"
/db_xref="GI:119356127"
/db_xref="GeneID:4570774"
/translation="MEALAVIAPLDYVVEPATYLRDQEYDYLVKGIVFGKKFVWCVNI
KTRLTRTGEMQLLIGKDKALHPLLLVTGYVPPEAADRLRSIGIEFIDKAGNMFINQPP
LLIFVKGNKPEKEKNTMPGTRLFKGVGLKIVYLLLCRPDLVNSSYRDLSEMTGVALGT
VNTTITELLMKDFILDMGKRGKKILNRKKLFERWVEAYPDYLKPKLFLGRFHGDEFWW
KNTNLDPASAQWGGEIAASKLTGYLKPGSAALYTDKKFLTDLVITNRLKKDPQGNVEI
FERFWPMDYGFGDLDTTHPIIIYADLLAIGDQRTTETAKMIYEQYLDQYFRQD"
misc_feature complement(313540..313962)
/locus_tag="Cpha266_0284"
/note="Uncharacterized protein conserved in bacteria
(DUF2186); Region: DUF2186; pfam09952"
/db_xref="CDD:204352"
gene 315008..315379
/locus_tag="Cpha266_0285"
/db_xref="GeneID:4570775"
CDS 315008..315379
/locus_tag="Cpha266_0285"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910772.1"
/db_xref="GI:119356128"
/db_xref="GeneID:4570775"
/translation="MIRKITITGFLLLAVAFNANAQDIDRINQLEKEVREINIRLSKL
ESLLSNPGKPHEHVTPGEGWKSIMNWRKLTTDMDYSDVQKTLGEPQRVDGGQVAHWYY
QNGGNVTFMGGKVYQWSEPRH"
sig_peptide 315008..315073
/locus_tag="Cpha266_0285"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 1.000 at
residue 22"
misc_feature <315071..>315367
/locus_tag="Cpha266_0285"
/note="ribokinase/pfkB superfamily: Kinases that accept a
wide variety of substrates, including carbohydrates and
aromatic small molecules, all are phosphorylated at a
hydroxyl group. The superfamily includes ribokinase,
fructokinase, ketohexokinase; Region:
ribokinase_pfkB_like; cl00192"
/db_xref="CDD:212177"
gene 315451..315627
/locus_tag="Cpha266_0286"
/db_xref="GeneID:4570776"
CDS 315451..315627
/locus_tag="Cpha266_0286"
/note="KEGG: cch:Cag_1360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910773.1"
/db_xref="GI:119356129"
/db_xref="GeneID:4570776"
/translation="MMVTATANNPEETRYVTTATIGEKFYTVVWTWRANARRIISFRR
ARDVEERAYRQIHG"
misc_feature <315457..315600
/locus_tag="Cpha266_0286"
/note="Protein of unknown function (DUF497); Region:
DUF497; cl01108"
/db_xref="CDD:154200"
gene 315590..315913
/locus_tag="Cpha266_0287"
/db_xref="GeneID:4570777"
CDS 315590..315913
/locus_tag="Cpha266_0287"
/note="KEGG: cte:CT0461 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910774.1"
/db_xref="GI:119356130"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:4570777"
/translation="MSRKERIVRYTDKELESMQVHGQDKSDWKSAAAISGKEIEAAVA
GDEDETGMHIDWSSISAEPPRPKAVLNMRVDYDVLEFFRSQGKGYQKKINAVLRSYVE
QKQRH"
misc_feature <315776..315892
/locus_tag="Cpha266_0287"
/note="Domain of unknown function (DUF4415); Region:
DUF4415; pfam14384"
/db_xref="CDD:206552"
gene 315976..316242
/locus_tag="Cpha266_0288"
/db_xref="GeneID:4570778"
CDS 315976..316242
/locus_tag="Cpha266_0288"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910775.1"
/db_xref="GI:119356131"
/db_xref="GeneID:4570778"
/translation="MLVVFHAATAFFLKSIPDVIWSGLLASFLTLVGVLLSNRGYTQR
LRMQLDHDAAEKTKERTATLRRETYLRAAEELVRVNAYLASPSI"
gene 316311..316595
/locus_tag="Cpha266_0289"
/db_xref="GeneID:4570779"
CDS 316311..316595
/locus_tag="Cpha266_0289"
/note="KEGG: cch:Cag_0520 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910776.1"
/db_xref="GI:119356132"
/db_xref="GeneID:4570779"
/translation="MKRINWNTEKSLVLKASRGICFEDVIFFVERGEILDDYLHPNQE
VYPGQRIMVIGMTNYAYLVPYVENEEELFLKTIIPSRKATQQYFGEKHES"
misc_feature 316362..316547
/locus_tag="Cpha266_0289"
/note="Domain of unknown function (DUF4258); Region:
DUF4258; pfam14076"
/db_xref="CDD:206246"
gene 316573..316872
/locus_tag="Cpha266_0290"
/db_xref="GeneID:4570780"
CDS 316573..316872
/locus_tag="Cpha266_0290"
/note="KEGG: lbl:LBL_0502 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910777.1"
/db_xref="GI:119356133"
/db_xref="GeneID:4570780"
/translation="MEKNMKAKLTKEEKEILDSFEKGEWVPVADLSKRRKELAEYAGN
SLKKDKRLNIRISERDLTELQRKAIKEGLPYQTYVASIIHKFINGTLVDGAAKDG"
misc_feature 316579..316839
/locus_tag="Cpha266_0290"
/note="Protein of unknown function (DUF3680); Region:
DUF3680; cl02189"
/db_xref="CDD:207550"
gene 317163..317612
/locus_tag="Cpha266_0291"
/db_xref="GeneID:4570781"
CDS 317163..317612
/locus_tag="Cpha266_0291"
/note="TIGRFAM: nucleotidyltransferase substrate binding
protein, HI0074 family;
KEGG: lpf:lpl2847 hypothetical protein"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase substrate binding
protein"
/protein_id="YP_910778.1"
/db_xref="GI:119356134"
/db_xref="InterPro:IPR010235"
/db_xref="GeneID:4570781"
/translation="MATIRKFALSNQDISWIQRYRYYVQAFGQLDRAVELARQRPLTE
LEQQGLIQSFEYTHELAWNTLKDFLENKGVQPLYGSKDTTREAFKRGLIEDGEIWMQM
INSRNLTSHTYNQEIADEIAEAIRIHYHAAYRTLVDTLEPLTSERPE"
misc_feature 317214..317585
/locus_tag="Cpha266_0291"
/note="Nucleotidyltransferase substrate binding protein
like; Region: NTase_sub_bind; pfam08780"
/db_xref="CDD:204062"
gene 317609..317935
/locus_tag="Cpha266_0292"
/db_xref="GeneID:4570782"
CDS 317609..317935
/locus_tag="Cpha266_0292"
/note="PFAM: DNA polymerase, beta domain protein region;
KEGG: net:Neut_0173 DNA polymerase, beta domain protein
region"
/codon_start=1
/transl_table=11
/product="DNA polymerase subunit beta"
/protein_id="YP_910779.1"
/db_xref="GI:119356135"
/db_xref="InterPro:IPR002934"
/db_xref="GeneID:4570782"
/translation="MKYGLDDTTIARIHGVIARYGQVDKAILYGSRAKGNYRAGSDID
LTLVGGHDLNLTVLYRIMDDIDDLLLPYTFDISLLHSISDRDVLDHIKMVGKVFYEKT
QTSQFF"
misc_feature 317633..317881
/locus_tag="Cpha266_0292"
/note="Nucleotidyltransferase (NT) domain of
Staphylococcus aureus kanamycin nucleotidyltransferase,
and similar proteins; Region: NT_KNTase_like; cd05403"
/db_xref="CDD:143393"
misc_feature order(317693..317701,317708..317710,317729..317734,
317738..317740,317825..317827,317831..317833)
/locus_tag="Cpha266_0292"
/note="active site"
/db_xref="CDD:143393"
misc_feature order(317693..317701,317708..317710,317729..317734,
317738..317740)
/locus_tag="Cpha266_0292"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143393"
misc_feature order(317732..317734,317738..317740,317831..317833)
/locus_tag="Cpha266_0292"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143393"
misc_feature order(317825..317827,317831..317833)
/locus_tag="Cpha266_0292"
/note="antibiotic binding site [chemical binding]; other
site"
/db_xref="CDD:143393"
gene 317966..318145
/locus_tag="Cpha266_0293"
/pseudo
/db_xref="GeneID:4570783"
gene complement(318232..319209)
/locus_tag="Cpha266_0294"
/db_xref="GeneID:4570784"
CDS complement(318232..319209)
/locus_tag="Cpha266_0294"
/note="KEGG: ana:alr0722 unknown protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910780.1"
/db_xref="GI:119356136"
/db_xref="InterPro:IPR002345"
/db_xref="GeneID:4570784"
/translation="MKRKIHLSHLLVALLLSLWLPMYGCSTPHSATEDISQQPTAGIS
GMAQIDGNSWLVVHDALSFENGPRMSIITLSVDAAPVLHPVTIDSWPDAGGQASDLES
LCPVPSHPNEYLMAESGTWKEKGGRLFHLRLNALTRQAAILGVMKLPVLADNNPQQVG
DQYEALACVRGADGRLLLLLGERGGSQRFPEGVIRWGVLDIERHELQFTEKGLEGVKV
NAPGKWKNELTNRDISDMYISPEGEIWVSAAEDNGDNGPFTSVIYSPGRISGNFSLPV
IANRHSGVWRTIGSLKIEALSGPAESVAGSRMSIGSDDENYGGIWRPVE"
sig_peptide complement(319117..319209)
/locus_tag="Cpha266_0294"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.975 at
residue 31"
gene complement(319399..319950)
/locus_tag="Cpha266_0295"
/db_xref="GeneID:4570785"
CDS complement(319399..319950)
/locus_tag="Cpha266_0295"
/note="KEGG: cte:CT1658 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910781.1"
/db_xref="GI:119356137"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4570785"
/translation="MRPAHIIRILPLCAFLLISGCSGNSSKQSESSSGNASVQQQASK
IIEPGDLITAKDAETMLGEPVKPAEKTDNQVVGQKLCLYNPINTGSSEFLQVGLTQDA
FMPPQGISSASIYKSLKDNFEGMRTDVKGVGDEAFIATGGIYILTDGYYIQIGAGNSS
NETVRNKLIEAGKIAVAKLNTLK"
sig_peptide complement(319867..319950)
/locus_tag="Cpha266_0295"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.968) with cleavage site probability 0.728 at
residue 28"
gene 320763..323612
/locus_tag="Cpha266_0296"
/db_xref="GeneID:4570786"
CDS 320763..323612
/locus_tag="Cpha266_0296"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC;
PFAM: cation transporting ATPase domain protein domain
protein; Haloacid dehalogenase domain protein hydrolase;
cation transporting ATPase domain protein; E1-E2
ATPase-associated domain protein;
KEGG: gvi:glr4215 cation-transporting ATPase PacL homolog"
/codon_start=1
/transl_table=11
/product="P-type HAD superfamily ATPase"
/protein_id="YP_910782.1"
/db_xref="GI:119356138"
/db_xref="InterPro:IPR000695"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR004014"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006068"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:4570786"
/translation="MPTEIPSRPDTRVLDGKLWHTLPLETALAQLGLSHGGLTTAEAN
SRRETFGPNELEEKGGRTVWHILWEQVSSVMIVILLIAGVLALLFKGGGGPPIDAIAI
FSIVILFVVQGVMQEYRAQKAIAALKQMSSPTVKVVRDGQVQEMSARDLVPGDLVKLE
TGSVVPADCRIVESVNLRIQEAALTGESEPIEKFSGVLEGEDLSLGDRKNMGYMGTFA
SYGRGEALVVETGMRTELGKIASMIQNVKHEETPLQKKLDKLGKTLALIALVVAVVVA
LTGVYIEGKTWAEVLIIAIAISVAIVPEGLPAVQTFSLAIGAQRMVKRKALIRKLPAV
EALGSVTVICSDKTGTLTQNKMTVTELETLDHRVELDTQARQYDIEHGQPELAALVAC
GGLCCDAVLNPDGETGVGDPTEVALAVAAHRYNLSRIALESVLPRVAEIPFDSGRKLM
TTIHKLPEGGALPSTISAMAAGLNGSPYVVFTKGAADNMLAICDRVFSVGQVRPLTDD
DRARIHAANSKMASDGIRVLGVGYHGLPDLSEYEQPGKVERELVFLGLVGMIDPARPE
AKDAVAKCKTAGIRTIMITGDHPDTARYIAADLGITSHDGRVITGVELEKMSDTDLKK
ALKDANTNCFARVSPEHKLRIVGALQELGNIVAMTGDGVNDAPALKRADIGVAMGITG
TDVSKEAADMVLLDDNFATIVAAIEEGRVVYDNLRRFVMFSISGNIAKVIIVAVSPLI
GLAAMLKPIQILFSNLLTDGLLGLGMGMEAAEKNTMQRPPYSPQESIISRVVGRHIAI
IGPVIGLLLLVVGYLQWQQLGLPNVLQIKNEAERNALFTDPKVLMWGTLMFTALAMMQ
VGRAFSSRSFLDPFWKQPLRTNKVLVGMILAVVTLQLFVVYTPGVQTFFSAVSLSGTN
LGLCIAFAMVVLTIMELLKALERRNAAAKQPGGKK"
misc_feature 320817..323579
/locus_tag="Cpha266_0296"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: MgtA; COG0474"
/db_xref="CDD:30822"
misc_feature 320817..320987
/locus_tag="Cpha266_0296"
/note="Cation transporter/ATPase, N-terminus; Region:
Cation_ATPase_N; pfam00690"
/db_xref="CDD:201397"
misc_feature 321063..321770
/locus_tag="Cpha266_0296"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature 321945..322250
/locus_tag="Cpha266_0296"
/note="Putative hydrolase of sodium-potassium ATPase alpha
subunit; Region: Hydrolase_like2; pfam13246"
/db_xref="CDD:205426"
misc_feature 322455..322796
/locus_tag="Cpha266_0296"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 322515..322517
/locus_tag="Cpha266_0296"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature 322998..323567
/locus_tag="Cpha266_0296"
/note="Cation transporting ATPase, C-terminus; Region:
Cation_ATPase_C; pfam00689"
/db_xref="CDD:201396"
gene complement(324655..327423)
/locus_tag="Cpha266_0297"
/db_xref="GeneID:4570787"
CDS complement(324655..327423)
/locus_tag="Cpha266_0297"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: cch:Cag_0486 TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910783.1"
/db_xref="GI:119356139"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:4570787"
/translation="MSDHSSIDNQPAGGFAAISKYNPHLWSADQLRAIFVARKNELAD
LQHTLSSTPSGTVGQHILLVGARGMGKSTLMRRLALAVEDDPALSAAWLPLRFPEEQY
TVATLGQFWANVLDSLADALQHLGQSVSELDAAAERIAAMPPAEQAAACLATIDRCAD
KRGQRLLLLVDNTDLLLRNIGSDAQWALRSTLQSNPRLLWVGGSYQSLEAESSYHDAF
LDFFRIIHLRPLRLDEMRQALLALAETFGGSVARQQMERQLAAQPERLPTLRQLSGGN
PRTTVMLYEILANGQKGNVRSDLEALLDNMTPLYKARMDALADLPRKLLAHILEHWAP
ISIGDLAAASQVANTSISPQLKRLELEGLIEKTGLQGTTRSGYQASERFFNIWYLMRL
SPRRQRSRLAWLVEFMRLWFSSDELRTLAQQRLSDGRTAFRSSHEQEYDRALADALPD
QTPERHALRWSLLKQLKENRSQLAELFDLEGADADFKGADDYLRRLAELSARLHQNPH
AATEEEKKRWVNDVLGSIGFNLAQKESLAEAAADLNRDEYDKLEKLLHEERRNLENRF
GAAAVQTVRTAVLSQDFFPDMPDSHLAYEQIRACFAEKPEALRFGCELFYNNHNDEWC
YKAQKLAQETWPQDAGIAYQCAWLLHIELGRYDEAETAYRRTIELDEKNTYPWNGLGN
LLKDHLGRYEEAEVAYRRAIELDEKYAYPWNGLGNLLSDQLGRPEEAEAAYRQAIALD
EKDASPWNGLGDLLADQLDRPVEAEAAYRQAIALDEKDPYPLTNLARLLARLERKEDA
ETFYRDVVRSNTDDQQLLLQAHLFLGNRQLAIDALQALASAAQSGDQLAFFQLKEQIW
ECHELGLGERLADLMAESDAAGFLVPFVQALYTLAGATNKLRDLPLESRQMADEIVRL
ARLRQKRT"
misc_feature complement(<327028..327321)
/locus_tag="Cpha266_0297"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:205372"
misc_feature complement(<327187..327252)
/locus_tag="Cpha266_0297"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature complement(326323..326445)
/locus_tag="Cpha266_0297"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature complement(325306..325515)
/locus_tag="Cpha266_0297"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(325198..325500)
/locus_tag="Cpha266_0297"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(325255..325260,325270..325275,
325282..325287,325363..325365,325369..325371,
325378..325383,325387..325392,325477..325482,
325489..325494,325498..325500))
/locus_tag="Cpha266_0297"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(325216..325218,325225..325227,
325237..325239,325276..325278,325321..325323,
325330..325332,325342..325344,325381..325383,
325426..325428,325435..325437,325447..325449,
325483..325485))
/locus_tag="Cpha266_0297"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(325096..325305)
/locus_tag="Cpha266_0297"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(<325072..325290)
/locus_tag="Cpha266_0297"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(325072..325077,325153..325155,
325159..325161,325168..325173,325177..325182,
325270..325275,325282..325287))
/locus_tag="Cpha266_0297"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(325111..325113,325120..325122,
325132..325134,325171..325173,325216..325218,
325225..325227,325237..325239,325276..325278))
/locus_tag="Cpha266_0297"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene complement(327416..328633)
/locus_tag="Cpha266_0298"
/db_xref="GeneID:4570788"
CDS complement(327416..328633)
/locus_tag="Cpha266_0298"
/note="KEGG: cch:Cag_0485 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910784.1"
/db_xref="GI:119356140"
/db_xref="GeneID:4570788"
/translation="MKLGNPATGDDFFGRTQELSDLWRYLESDHIRFPGVRRLGKTSI
LRRLESEAADHGLLARWLDVSNIDSAPGFISLLDQAFPEKSIRSFLSDRAQQAGSWFN
RIRKIDATLPDAVGGGGFGIEFGGETVPEWEKDAGSLHSRLCNQPLLILLDEFPWMLE
KLIQRDRQEAEQLLSWLRIWRQSQGSCRFVFTGSIGLQSLLERHGLGETMNDCYPYPL
GPYKLSEARGLWQYFAPIADKTPWEIADPVIDYALGRVGWLSPYFLSLLLDESMRAAR
ERRQECPADATGEARIEIEDVDDAYENLLAERSRFHHWEKRLKSALEPADLDLCLSLL
SHLSRHADGLTLPQLSSRLARREPEPDLRTRRIQDLLVRLTDEGYTSPPDSNKRIQFL
SFPLRDWWNRNHV"
misc_feature complement(328100..328600)
/locus_tag="Cpha266_0298"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:205372"
gene 329006..331756
/locus_tag="Cpha266_0299"
/db_xref="GeneID:4570789"
CDS 329006..331756
/locus_tag="Cpha266_0299"
/note="KEGG: fnu:FN1445 DNA helicase"
/codon_start=1
/transl_table=11
/product="DNA helicase"
/protein_id="YP_910785.1"
/db_xref="GI:119356141"
/db_xref="GeneID:4570789"
/translation="MNSRQNLVIIKGKDRTDQILRIGEATEQRMIVTFSNGKPYFYAR
ENVAWLSNPGRITIDHCQVLVEGDLLFDIEEVLRFETWVKIFRRNGESRCCLFSDFSV
QRMSSSDGRSTDVLAYFRELAETTGLMTNDNKSMMAMKYRNLGVVSGRSILSSFLQAR
PPGSGTVPSDLIFPFGCNMSQKMAVQRAIEHPVSLIQGPPGTGKTQTILNLIGNMLLR
RKRVAVVSSNNSATANVLEKLQKYELDFVAASLGSAENKQVFIEGQSSDVVQMPTFQA
DQEASVLQEISLLNTSLDNAFAEKNGLAVIIQQIDALKLEMAHFEKYCDETNGGDLRV
IDRAMNAELSARKLLHAWLASEKELKRYAKAGVASPSNRRVGFLKKIGFLLRFGTAGS
AFFEVSVRERIPLLQKAYYLRKLADMEQRRKTLEGSLAGFHFDERLERLTELSMQLLK
HRLAQHYNNRERRIFALEDLRNQPEKFLEEYPVILSTTFSIITSLKSGYLFDCVIVDE
ASQVDLLSGVLAMGCAEKLVIVGDSMQLPNVLTAQDEKQAKEVALQYDLPDYARFERH
NLLSAVRTAFPDIPETLLLEHYRCHPKIIQFCNQKFYGGELLVMTRDQGEADVLKAYM
TVEGRHARGTINQRQVDEITQNVLPELASIHPADIGIVSPFRAQADRMLLSVGSNEIG
IDTVHKYQGREKRAIIITTVSNKSNEFVDNPNLLNVAVSRAKEKLRLVVSMEMADGNS
NVADLVRYIRYNNCEVIPGRVRSVFDLLYQDYTAARLAVLKKWKRVSIYDSENLVYSE
IDAVLQEKAYRGLGIVFQFPLSMLVRNRENLTTEESSYAAHPWTKTDFLVYRRVDKSP
VLVIEVDGYAFHREGTRQAERDALKDAVLEKCGLPILRLSTIGSDERNRIRKKLEDVV
AS"
misc_feature 329537..>329788
/locus_tag="Cpha266_0299"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature <329591..331285
/locus_tag="Cpha266_0299"
/note="Superfamily I DNA and RNA helicases and helicase
subunits [DNA replication, recombination, and repair];
Region: COG1112"
/db_xref="CDD:31309"
misc_feature 329597..329620
/locus_tag="Cpha266_0299"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(329600..329620,329624..329626)
/locus_tag="Cpha266_0299"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 329780..329788
/locus_tag="Cpha266_0299"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature <330278..330616
/locus_tag="Cpha266_0299"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 330692..331186
/locus_tag="Cpha266_0299"
/note="Family description; Region: UvrD_C_2; cl15862"
/db_xref="CDD:210262"
misc_feature <331538..331741
/locus_tag="Cpha266_0299"
/note="Superfamily of nucleases including Short Patch
Repair (Vsr) Endonucleases, archaeal Holliday junction
resolvases, MutH methy-directed DNA mismatch-repair
endonucleases, and catalytic domains of many restriction
endonucleases, such as EcoRI, BamHI, and...; Region:
Restriction_endonuclease_like; cl00277"
/db_xref="CDD:212600"
gene complement(331874..333415)
/gene="guaA"
/locus_tag="Cpha266_0300"
/db_xref="GeneID:4570790"
CDS complement(331874..333415)
/gene="guaA"
/locus_tag="Cpha266_0300"
/EC_number="6.3.5.2"
/note="contains glutamine-hydrolyzing domain and glutamine
amidotransferase; GMP-binding domain; functions to produce
GMP from XMP in the IMP pathway"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_910786.1"
/db_xref="GI:119356142"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR001674"
/db_xref="InterPro:IPR004739"
/db_xref="InterPro:IPR006220"
/db_xref="InterPro:IPR011702"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:4570790"
/translation="MQSVTVLDFGSQYTQLIARRIRELGIYSEILPYNASPETIREHD
PKAIILSGGPTSVYGDSALLPDGGVFMLGVPVLGICYGLQAIAKHFGGEVAGSSKQEF
GRAKMLVSHNEESESPLFRNIPDSDVWMSHGDKVVRLPEGFRVTASSENSEMCALESY
GSKAALKVYGLQFHPEVQHTLYGKQLLSNFLIDIAGIKPDWSPKSFIGHQIEEIRARA
GKDKVICGISGGVDSTVAAVLVSQAIGKQLHCVFVDNGLLRKNEAVKVMNFLKPLGLS
VTLADASDLFLKRLDKVASPEKKRKIIGRTFIHVFEQHLNEEKYLVQGTLYPDVIESV
SVKGPSETIKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELGIAEDILMRHPFP
GPGLAVRVLGSVSRPRLDILREADEIFIEELKTSGLYQHVWQAFSVLLPVQSVGVMGD
KRTYENVLALRAVESTDGMTADWAQLPHDFLARVSNRIINEVRGINRVAYDISSKPPA
TIEWE"
misc_feature complement(331877..333415)
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:178842"
misc_feature complement(332843..333406)
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature complement(order(332894..332896,333023..333025,
333173..333178,333254..333262,333380..333385))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature complement(order(333173..333175,333257..333259))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature complement(order(332888..332890,332894..332896,
333176..333178))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature complement(order(332900..332902,333020..333022,
333164..333166))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature complement(331880..332752)
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:30184"
misc_feature complement(order(332210..332254,332270..332344,
332357..332386,332411..332458,332474..332476,
332477..332578,332606..332638,332642..332674,
332678..332752))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature complement(order(332309..332311,332657..332659,
332663..332665,332717..332728,332732..332740))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature complement(order(331880..331948,331952..331978,
331997..332044,332054..332086,332093..332122,
332147..332185))
/gene="guaA"
/locus_tag="Cpha266_0300"
/note="Dimerization subdomain; other site"
/db_xref="CDD:30184"
gene complement(333447..335729)
/locus_tag="Cpha266_0301"
/db_xref="GeneID:4570791"
CDS complement(333447..335729)
/locus_tag="Cpha266_0301"
/note="TIGRFAM: penicillin-binding protein, 1A family;
PFAM: glycosyl transferase, family 51; penicillin-binding
protein, transpeptidase;
KEGG: plt:Plut_1945 penicillin-binding protein 1A"
/codon_start=1
/transl_table=11
/product="1A family penicillin-binding protein"
/protein_id="YP_910787.1"
/db_xref="GI:119356143"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR011816"
/db_xref="GeneID:4570791"
/translation="MITLRTTVTVNTTFFKKSFITLAALVFFLLTSVSAFALNPFKGL
PSLEELENPNPDLASLVYSEDGVLLHKFFVKNRTFIPLKSIPRSARYALIATEDVTFY
QHWGVDLRRLALVMGENIIKGRQRWHGASTITQQLAKNLYLTQERTVSRKVKELITAV
ELEKTYTKDEILALYLNTVYFGSGAYGIEAAARTYFSKPASQLTLPESATLIATLKNP
TGYNPVKNPSGAISRRNLILSLMEKEKFITPEQAATAKRSRLLLHYTPVSHHGIAPYF
TEYIRQTVKPASMLGDINLHRDGLTIQTTLDSRMQKYAEQAAVDHLASLQASFDRSWR
WPESLKNQMIKESPRFKELLEDGVSAQQALVQLRADRIWLNNLLREKTRIQVALVAID
PANGHIKAWVGGNSLSSEDYKYQFDHVWQAKRQPGSTFKPFVYLTAIDKGIPANFRVL
DQPLALKSGNGIWSPRNSDGSSGGMTTLRSALTRSLNQVSVRLAYEQLTVPEIISYAK
RMGISSVMPQNYSIALGTGEVSPLELAGAFSTFANNGIWTEPVSILKVSDKHHRSMSE
STPNRRFAIDSTSNFVMVSMMRDVINRGTASSIRGRYAMTMDAAGKTGTTQSLRDAWF
AGFTPQLVAVVWTGFDDERIKFTSMEYGQGARAALPIWAGFMKRCYSDPSLKLTNRYF
HIPNTVIAVPISGQASVASAPANNSVYIEYYTPKGFNYYKSNPVQSTPGDQGDSGVPT
EGDLEPAPQPAETPAQEGAF"
sig_peptide complement(335616..335729)
/locus_tag="Cpha266_0301"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.992 at
residue 38"
misc_feature complement(335007..335537)
/locus_tag="Cpha266_0301"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(333729..335504)
/locus_tag="Cpha266_0301"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:211713"
misc_feature complement(<334701..>334829)
/locus_tag="Cpha266_0301"
/note="N-terminal Mad Homology 1 (MH1) domain; Region:
MH1; cl00055"
/db_xref="CDD:206806"
misc_feature complement(order(334707..334709,334800..334805))
/locus_tag="Cpha266_0301"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:199811"
misc_feature complement(333729..334571)
/locus_tag="Cpha266_0301"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
gene complement(335760..336683)
/locus_tag="Cpha266_0302"
/db_xref="GeneID:4570792"
CDS complement(335760..336683)
/locus_tag="Cpha266_0302"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: plt:Plut_1944 proline iminopeptidase, putative"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_910788.1"
/db_xref="GI:119356144"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR003089"
/db_xref="InterPro:IPR008262"
/db_xref="GeneID:4570792"
/translation="MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKP
LVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGFADEAGELIEHLGLNKSRNLHIV
GHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVF
QSEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHV
IEIASPVLCCVGMADHTIPPEGTITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNF
AEALIKHFDSARKFHENNSTEPARCKQYQIS"
misc_feature complement(335847..336599)
/locus_tag="Cpha266_0302"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
misc_feature complement(<336291..>336467)
/locus_tag="Cpha266_0302"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 336916..337584
/locus_tag="Cpha266_0303"
/db_xref="GeneID:4570595"
CDS 336916..337584
/locus_tag="Cpha266_0303"
/note="KEGG: plt:Plut_1943 DedA protein"
/codon_start=1
/transl_table=11
/product="DedA protein"
/protein_id="YP_910789.1"
/db_xref="GI:119356145"
/db_xref="GeneID:4570595"
/translation="MDNSFTGILSTIIDFILHIDTHLQALASEYGIWLYGILFLIIFC
ETGLVVTPFLPGDSLLFAAGSLASMPGSELDQHLLFLIFFVAAVLGDTLNYTIGHKLG
PKVFGYEKTRFFNPDYLDKTNAFFKKYGGKTIIIARFIPIIRTFAPFVAGIGAMSYKK
FILFNIIGALLWVGLFNYSGYFFGQLPFVQKNFKLLILFIIIISVLPPVFEYLKHRFR
RSGQ"
misc_feature 336949..337563
/locus_tag="Cpha266_0303"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; cl00429"
/db_xref="CDD:207043"
misc_feature 336970..337494
/locus_tag="Cpha266_0303"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
gene 337928..338001
/locus_tag="Cpha266_R0007"
/note="tRNA-Pro1"
/db_xref="GeneID:4570596"
tRNA 337928..338001
/locus_tag="Cpha266_R0007"
/product="tRNA-Pro"
/db_xref="GeneID:4570596"
gene 338068..338544
/locus_tag="Cpha266_0304"
/db_xref="GeneID:4570597"
CDS 338068..338544
/locus_tag="Cpha266_0304"
/note="PFAM: transcription activator, effector binding;
KEGG: cte:CT0179 hypothetical protein"
/codon_start=1
/transl_table=11
/product="transcription activator, effector binding"
/protein_id="YP_910790.1"
/db_xref="GI:119356146"
/db_xref="InterPro:IPR010499"
/db_xref="GeneID:4570597"
/translation="MDFECAFVPELLELTPIPAVTIKCTTTVAAIPALFDSGYRRILE
YLKRESAGTAGPPFAIYTTLDSDDIDVEFGFPVTRSVAGSGSLTESRTPSGKAVSILF
IGPYEDVEPAYDALLKWVADNNLTAGSVAYEVYLSDPKDTLPEMQQTRIHLLLEQS"
misc_feature 338092..338535
/locus_tag="Cpha266_0304"
/note="Bacterial transcription activator, effector binding
domain; Region: AraC_E_bind; smart00871"
/db_xref="CDD:197939"
gene 338629..340107
/locus_tag="Cpha266_0305"
/db_xref="GeneID:4570598"
CDS 338629..340107
/locus_tag="Cpha266_0305"
/note="PFAM: amine oxidase; FAD dependent oxidoreductase;
KEGG: cte:CT0180 lycopene cyclase, putative"
/codon_start=1
/transl_table=11
/product="amine oxidase"
/protein_id="YP_910791.1"
/db_xref="GI:119356147"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001613"
/db_xref="InterPro:IPR002937"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR008151"
/db_xref="GeneID:4570598"
/translation="MDMENYNVVVIGAGIGGLAAGALLARKGLQVTVLEAQDYPGGCA
ATFSMQGYRFDAGATIGCGFHPGAPMDMLGRELGISWPVTPEPVAWQYRHRGITLNLT
TSRSEIINRFPRSEAFWKEQSLLAALLWRLAEGGLSWPVKGPRDLALLARKGVAELPG
TAVLLKFAAKTAREWLASHDLDTDAEFVRFLDAQLLVSVQTTTMHANALNAAIALDLP
VSGASRIAGGIGRVSEQLAGSIAESGGAVLYGQEVTRIDSVRREVIGVETRDGGAFAA
DFTIANLTPDSLEKLVDMEGEPFSREEIGAKWSAFVLYLGMDAAFFGGVLPTHLQIVA
GSGELAECGSIFVSASSPVETDRAPEGLCAVTISTHTAPEPWFEAKKRGQSAYLEMKE
RYTEKVLDLFSEQIPGVREAIKSITASTPVTWERYTGRANGHVGGYPQTSLFNVRGPA
TRFDNLFLVGDSIFPGQSLPGVVTGARRSVELLLQRMAKGTR"
misc_feature 338704..340080
/locus_tag="Cpha266_0305"
/note="C-3',4' desaturase CrtD; Region: desat_CrtD;
TIGR02733"
/db_xref="CDD:162990"
misc_feature <338704..338826
/locus_tag="Cpha266_0305"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene 340193..341449
/locus_tag="Cpha266_0306"
/db_xref="GeneID:4570599"
CDS 340193..341449
/locus_tag="Cpha266_0306"
/note="KEGG: cch:Cag_1575 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910792.1"
/db_xref="GI:119356148"
/db_xref="GeneID:4570599"
/translation="MNTLEKLQILSGAARYDASCSSSGSKREGSSSGLGNTSSSGICH
SWSDDGRCISLLKILLSNDCRYDCAYCVNRISNPVQRASFTAREVVDLTMEFYRRNYI
EGLFLSSAVMQSPDHTMERMVSVAETLRIDEKFGGYIHLKIIPGSSSELVRKAGLYAD
RISVNIELPSETALQRLAPQKQKAGILEPMAFIGREIKGSLLERQRGRNATPRFAPAG
QSTQMIIGASPESDFQILKLSQGLYKKMNLKRVYYSAFIPVNEDSRLPVLASPPLLRE
HRLYQADWLLRFYGFTAEEILSDEAPNLDETFDPKTAWALRNPGFFPVEINRADYSVL
LRVPGIGVTSARRIVAARRFASITPEGMKKIGVVMKRAKYFITCSGRPFENTDRQPAL
LKSRLLLAGGVAPEPPKQLVLPGLFA"
misc_feature 340202..341386
/locus_tag="Cpha266_0306"
/note="putative DNA modification/repair radical SAM
protein; Region: rSAM_link_UDG; TIGR03916"
/db_xref="CDD:188431"
gene 341454..342191
/locus_tag="Cpha266_0307"
/db_xref="GeneID:4570600"
CDS 341454..342191
/locus_tag="Cpha266_0307"
/note="KEGG: cte:CT0182 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910793.1"
/db_xref="GI:119356149"
/db_xref="GeneID:4570600"
/translation="MNSYLYDGTPEGLLSAAFRIIADVSDPEKATLAERRDTLFEEGE
FIGTDAVAAEKLFKRLRLEAPDAAYIFYYFTLAEKEGLETSLLRYLALALRHGDRVNG
NLIDPAVRDVVSVSRKAQRELHRMKGLVRFEKLRDGAYLARMEPDHNILQPLAVHFSR
RLRAEDWFIYDVRRRFAARWHCGNLQFGTIEQFTAPALSEEEMRIQALWQAFFKTIAI
SDRKNPGLQKSNMPMKYWKYLTEKQGE"
misc_feature 341463..342179
/locus_tag="Cpha266_0307"
/note="probable DNA metabolism protein; Region:
SAM_7_link_chp; TIGR03915"
/db_xref="CDD:188430"
gene complement(342385..343239)
/locus_tag="Cpha266_0308"
/db_xref="GeneID:4570601"
CDS complement(342385..343239)
/locus_tag="Cpha266_0308"
/note="PFAM: beta-lactamase domain protein;
KEGG: cte:CT0187 hypothetical protein"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_910794.1"
/db_xref="GI:119356150"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:4570601"
/translation="MQQRSTTITILADNCAAPGLKTEHGLSFFIEKEDITILFDTACD
NTLLYNAGALGVDLSQTELLVLSHGHYDHTGGVAEVLFLAPNANIYLHPAAFQERYSI
RNGTAKPTSMPDHARSAIINLPQQQIHRVSKPTMLCSGIGITGPIPRLTSYENPGGPF
FLDTTGKQPDPIDDDLSLWIESENGLIIVTGCCHAGLINTIRSIVEHTGEKRIAALIG
GFHLSAASTERLEKTVKELKEYDIRQIVPCHCTGKNATEYLAQFLGCPVEAGYAGLKL
EFQNPPQV"
misc_feature complement(342406..343218)
/locus_tag="Cpha266_0308"
/note="Metal-dependent hydrolases of the beta-lactamase
superfamily II [General function prediction only]; Region:
COG1237"
/db_xref="CDD:31430"
gene complement(343261..343833)
/locus_tag="Cpha266_0309"
/db_xref="GeneID:4570602"
CDS complement(343261..343833)
/locus_tag="Cpha266_0309"
/note="KEGG: cch:Cag_1755 outer surface protein, putative"
/codon_start=1
/transl_table=11
/product="outer surface protein, putative"
/protein_id="YP_910795.1"
/db_xref="GI:119356151"
/db_xref="GeneID:4570602"
/translation="MNRIKGVLGGMFTLFCTVSFAQAATPYASASAGVAILGTSKTET
MPETSMSYDPGYALTGAIGLEKGKIRFEGEVGYQKNGLKNTADTDVSIMTYMANGYVD
FKLPLSPVTPYVTAGAGVAGVKADGFGFDDDSSTVLAGQVGAGAGFSVAPFVKIDLKY
RYFMASDAEFDHEKFSIDSHNVMLGIRVGL"
sig_peptide complement(343762..343833)
/locus_tag="Cpha266_0309"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.808 at
residue 24"
misc_feature complement(343270..>343611)
/locus_tag="Cpha266_0309"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 344055..344348
/locus_tag="Cpha266_0310"
/db_xref="GeneID:4570603"
CDS 344055..344348
/locus_tag="Cpha266_0310"
/note="KEGG: cte:CT0188 C-type cytochrome, putative"
/codon_start=1
/transl_table=11
/product="C-type cytochrome, putative"
/protein_id="YP_910796.1"
/db_xref="GI:119356152"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4570603"
/translation="MMLCLSVAVSVPVFADKAPSSLQGKKLFNSSSLGGAANTKTCNA
CHPGGRGLESAGGNPELSKVINTCIAGPLNGSKLEPNSIEMQSLLLYIKSLKQ"
sig_peptide 344055..344102
/locus_tag="Cpha266_0310"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.866) with cleavage site probability 0.858 at
residue 16"
misc_feature <344235..>344345
/locus_tag="Cpha266_0310"
/note="Cytochrome c [Energy production and conversion];
Region: COG3258"
/db_xref="CDD:225797"
gene 344364..345188
/locus_tag="Cpha266_0311"
/db_xref="GeneID:4570604"
CDS 344364..345188
/locus_tag="Cpha266_0311"
/note="PFAM: NAD-dependent epimerase/dehydratase;
6-phosphogluconate dehydrogenase, NAD-binding;
KEGG: plt:Plut_1936 hypothetical protein"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_910797.1"
/db_xref="GI:119356153"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR006115"
/db_xref="GeneID:4570604"
/translation="MQKETISILGCGWLGMPLAKALIAQDYPVKGSTTNEDNLEAMRD
AGIEPYLVWLDPEVNGEDITDFLQSDILIVNIPPERRDDIVEYHIEQFSSLIDALGQS
PVRSVLFVSSTSVYPALQREVTEEDSVEPEALSGQALLHVEEMLMQETGFQTTVVRFG
GLIGYDRNPEKNLARMTELKDPDQPMNLIHRDDCVRIIMEIIRLQQWGEVFNACCPVH
PLKRDYYRRAAEVSGIPLPSLCSSEAPSPYKLVNSDKLQGALNYTFIYPDPVAQLG"
sig_peptide 344364..344438
/locus_tag="Cpha266_0311"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.704) with cleavage site probability 0.349 at
residue 25"
misc_feature 344379..345143
/locus_tag="Cpha266_0311"
/note="atypical (a) SDRs, subgroup 4; Region: SDR_a4;
cd05266"
/db_xref="CDD:187576"
misc_feature 344379..344969
/locus_tag="Cpha266_0311"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:205638"
misc_feature order(344391..344393,344397..344405,344460..344468,
344586..344594,344691..344699,344766..344768,
344778..344780,344838..344849)
/locus_tag="Cpha266_0311"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187576"
gene 345213..346583
/locus_tag="Cpha266_0312"
/db_xref="GeneID:4570605"
CDS 345213..346583
/locus_tag="Cpha266_0312"
/EC_number="6.3.5.9"
/EC_number="6.3.5.-"
/note="TIGRFAM: cobyrinic acid a,c-diamide synthase;
PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ
domain protein glutamine amidotransferase;
KEGG: plt:Plut_1935 cobyrinic acid a,c-diamide synthase
CbiA"
/codon_start=1
/transl_table=11
/product="cobyrinate a,c-diamide synthase /
hydrogenobyrinic acid a,c-diamide synthase"
/protein_id="YP_910798.1"
/db_xref="GI:119356154"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR004484"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:4570605"
/translation="MEKLDLCKKKPAFMLAAPSSGSGKTTLTLALLRILARRGYRVQP
FKCGPDYLDTRLHSLAASYGSMVSDGINLDTFMASESHVKELFSRYSCGSDASVVEGV
MGLFDGAEKARGSSAEIAKLLGIPVIMVVNAQSMAYSAAPLLYGYRTFDPDVHLVGVI
FNQVNTPSHYRYLEEAAFDAGVDPLGYVPRHEPIVISERHLGLNTSSSYDRQGAIEAM
ADHIEKSVAVDRLLELVGRDRESFSGSTSLDFHQRERGEKVIAVARDEAFNFTYLENL
DVLSQFGRIEFFSPMEDGRLPACDLLYLAGGYPELYAETLSSNSEMRRAIAAYCLGGG
AAYAECGGMMYLGAAMTLGDGLRYPMCGVLDLDTTMQDSRLTLGYRKVRLDTGYTKEL
RGHEFHYSRIERSGELHTIASITNARDEATETLLFRRQNTFASYLHLYWGETRDFPAF
LLNRES"
misc_feature 345243..346574
/locus_tag="Cpha266_0312"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:179218"
misc_feature 345990..346568
/locus_tag="Cpha266_0312"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(346230..346232,346530..346532,346536..346538)
/locus_tag="Cpha266_0312"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene 346590..347165
/locus_tag="Cpha266_0313"
/db_xref="GeneID:4570606"
CDS 346590..347165
/locus_tag="Cpha266_0313"
/note="KEGG: plt:Plut_1934 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910799.1"
/db_xref="GI:119356155"
/db_xref="GeneID:4570606"
/translation="MNSSGYIITGGPGSGKSTLLEAMRDAGYCCFSEVSRQLIRQQSL
LADGVLPWNNLPAFARLAFDAMMRQHDQAIDHDGICFFDRGIPDVFGYLEEGGHPVPA
CYIDAHERCRYEKNVIVLPPWKEIFTNDSERPQSFQQSVRLYRSICSVYERLGYTLHE
LPKSSVNERVRYLLKHFTELQAPARQQFYLH"
misc_feature 346605..347111
/locus_tag="Cpha266_0313"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 346605..347096
/locus_tag="Cpha266_0313"
/note="AAA domain; Region: AAA_28; pfam13521"
/db_xref="CDD:205699"
gene 347331..347825
/locus_tag="Cpha266_0314"
/db_xref="GeneID:4570607"
CDS 347331..347825
/locus_tag="Cpha266_0314"
/note="PFAM: ferric-uptake regulator;
KEGG: plt:Plut_1474 putative ferric uptake regulator, FUR
family"
/codon_start=1
/transl_table=11
/product="ferric uptake regulator family protein"
/protein_id="YP_910800.1"
/db_xref="GI:119356156"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:4570607"
/translation="MADISLQTKKETSDKTRQAESLFKSFMKEQGLRCTTERIAVLRE
LYRSNTHLDADEIFIRLKKKQVGISRATVYHTLNLLFKFHLVSKIDLGHKHTHYEKSH
GVTNHLHIICEKCGNVVEVSESGLSELLDRVCRENGFELGSFSLQVFGKCVGNCDENC
PKQK"
misc_feature 347442..347786
/locus_tag="Cpha266_0314"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(347481..347483,347625..347627,347649..347651,
347655..347657,347688..347690)
/locus_tag="Cpha266_0314"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 347535..347579
/locus_tag="Cpha266_0314"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(347646..347648,347652..347654,347709..347711,
347760..347762)
/locus_tag="Cpha266_0314"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(347661..347669,347715..347720,347745..347753,
347757..347783)
/locus_tag="Cpha266_0314"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(347664..347666,347673..347675,347784..347786)
/locus_tag="Cpha266_0314"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(347869..348480)
/locus_tag="Cpha266_0315"
/db_xref="GeneID:4570608"
CDS complement(347869..348480)
/locus_tag="Cpha266_0315"
/note="KEGG: pca:Pcar_0880 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910801.1"
/db_xref="GI:119356157"
/db_xref="GeneID:4570608"
/translation="MQQRFSKNQEQKLSNWRRRLNTQKKSEVLFEHWLFMHTAAVLFA
GKPGELLILKRGLFGLLPEETLESIDSFCSSLALQFNVLLENEHSIKVIFYNEVAVDR
RIGCIPKKILHCNLRYPFGLRSESFLKELGRRWLESGTTPHEIGIVLGYPLKDVWGFM
GISSDPCSGSCGWRIYGNPLPSLKKRTLYNHARTRAETYLRAA"
misc_feature complement(347893..348381)
/locus_tag="Cpha266_0315"
/note="Protein of unknown function (DUF3793); Region:
DUF3793; pfam12672"
/db_xref="CDD:193148"
gene 348685..349698
/locus_tag="Cpha266_0316"
/db_xref="GeneID:4570609"
CDS 348685..349698
/locus_tag="Cpha266_0316"
/note="KEGG: plt:Plut_0619 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910802.1"
/db_xref="GI:119356158"
/db_xref="GeneID:4570609"
/translation="MNVLLKSTALVGISLVCSSGLFAAEESRQSAALEPALFKGLSFS
GLLEVEGAYGESDGESSSDLSLATVELGLEAKVTDWLSARILLLYEQNGDDRILVDEA
SIRVQRDNSPFFVQAGRFTQSFGNFATGMISDPITLELGETKHHASLQAGYEGEIVSA
SFSFFKGDVQKEGMDEVNSFVGALSIGGEVNERFRYELGGSYCSNMADTDGLQDDFEP
DLYRTADYVGGYSVYGLLGFGSVEVRAEYLAAAESFVDGERSGLKPAAYNVEVGCDLP
ESLHLALRYAGAEDFNVEKQYGATLACDLSEKATLALEYLHNSNDDETSSDAVTVQLA
MSF"
sig_peptide 348685..348756
/locus_tag="Cpha266_0316"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 1.000 at
residue 24"
gene 349728..350033
/locus_tag="Cpha266_0317"
/db_xref="GeneID:4570610"
CDS 349728..350033
/locus_tag="Cpha266_0317"
/note="PFAM: FeoA family protein;
KEGG: cte:CT1744 hypothetical protein"
/codon_start=1
/transl_table=11
/product="FeoA family protein"
/protein_id="YP_910803.1"
/db_xref="GI:119356159"
/db_xref="InterPro:IPR007167"
/db_xref="GeneID:4570610"
/translation="MMVPLGFLLQGESAEIVGFRSGREKEHRGFRHGSGAGHGRAHRC
AEITKEQRLVEMGFCPGEVIEVLQSKAGGLLLLKLRDSRLALDKQIAMDIIVRRVTA"
gene 350030..350257
/locus_tag="Cpha266_0318"
/db_xref="GeneID:4570611"
CDS 350030..350257
/locus_tag="Cpha266_0318"
/note="PFAM: FeoA family protein;
KEGG: cte:CT1743 ferrous iron transport protein A"
/codon_start=1
/transl_table=11
/product="FeoA family protein"
/protein_id="YP_910804.1"
/db_xref="GI:119356160"
/db_xref="InterPro:IPR007167"
/db_xref="GeneID:4570611"
/translation="MNLSELKKGQAGRVVKLSAVPQLRRRLLDMGVLVGEMIRVVGVA
PLGDPVEVTVKNYKLSLRKKEVEGVIVEEVS"
misc_feature 350030..350221
/locus_tag="Cpha266_0318"
/note="FeoA domain; Region: FeoA; pfam04023"
/db_xref="CDD:202856"
gene 350257..350436
/locus_tag="Cpha266_0319"
/db_xref="GeneID:4570612"
CDS 350257..350436
/locus_tag="Cpha266_0319"
/note="KEGG: cte:CT1742 ferrous iron transport protein B"
/codon_start=1
/transl_table=11
/product="Fe2+ transport system protein B-like"
/protein_id="YP_910805.1"
/db_xref="GI:119356161"
/db_xref="GeneID:4570612"
/translation="MQVTETAGELVKPEKIIGKPSVIAVVGNPNSGKTTLFNALTGMN
QRVGNWPGVINPAIK"
misc_feature 350326..>350415
/locus_tag="Cpha266_0319"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 350335..350358
/locus_tag="Cpha266_0319"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature 350341..350361
/locus_tag="Cpha266_0319"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
gene 350470..351522
/locus_tag="Cpha266_0320"
/db_xref="GeneID:4570518"
CDS 350470..351522
/locus_tag="Cpha266_0320"
/note="KEGG: hch:HCH_03259 transposase and inactivated
derivatives"
/codon_start=1
/transl_table=11
/product="transposase and inactivated derivatives"
/protein_id="YP_910806.1"
/db_xref="GI:119356162"
/db_xref="GeneID:4570518"
/translation="MMKNDARSYTSDQQKLLRIKAVDMVFREGFTQRATAKALGVSRQ
HVVKWCKAFSSGSYEALELGRRGRRPGEQMLLQPWQCAVIFNTIRDKTPDQLKMPFVL
WERIGVRELIKKKFGITLALRTVGEYLKRWGMTPQRPIERAYERSSQAVENWLNNDYP
AIQKKAEEEGATILWGDETGVQNTSNVGRSYSPSGKTPVIRQSEKKIKTNMISAITNR
GKVRFMIYPGKMNQQMFIRFLERVIATIPGKVLFIVDNLKVHHGKKVAEWVTEHIGRI
ELFYIPSYSPDLNPDEYLNRDLKKNVNSRAIPRTEVELKMNLLSFMRKLQKLPDRVMS
YFNSSPIKYAARAEAV"
misc_feature 350503..350652
/locus_tag="Cpha266_0320"
/note="Homeodomain-like domain; Region: HTH_23; pfam13384"
/db_xref="CDD:205562"
misc_feature 350521..350868
/locus_tag="Cpha266_0320"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:205729"
misc_feature 350773..350931
/locus_tag="Cpha266_0320"
/note="Winged helix-turn helix; Region: HTH_33; pfam13592"
/db_xref="CDD:205770"
misc_feature 350983..351414
/locus_tag="Cpha266_0320"
/note="DDE superfamily endonuclease; Region: DDE_3;
pfam13358"
/db_xref="CDD:205537"
misc_feature 351100..351423
/locus_tag="Cpha266_0320"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3335"
/db_xref="CDD:33144"
gene 351497..353752
/locus_tag="Cpha266_0321"
/db_xref="GeneID:4570519"
CDS 351497..353752
/locus_tag="Cpha266_0321"
/note="TIGRFAM: ferrous iron transport protein B;
PFAM: Ferrous iron transport protein B domain protein;
Ferrous iron transport B domain protein; nucleoside
recognition domain protein;
KEGG: cte:CT1742 ferrous iron transport protein B"
/codon_start=1
/transl_table=11
/product="ferrous iron transport protein B"
/protein_id="YP_910807.1"
/db_xref="GI:119356163"
/db_xref="InterPro:IPR003373"
/db_xref="InterPro:IPR011619"
/db_xref="InterPro:IPR011640"
/db_xref="InterPro:IPR011642"
/db_xref="GeneID:4570519"
/translation="MLLVPKRCNVFDCRINTVDKKTGFFTHNGRHYELVDLPGIYSLS
ALSQDEEIAREFILEGQADLIINIVDASNPDRNLYLTSRLLEMKVPVLIALNMMDAAK
GRGIAFDIARLSSRIGCRIVPLVASRKDGVAELKDAIEEEICLKSFKGCRVTYPACIE
KSIRELSTDIRRFAEDAHYDPDWFALKLLEGDHLLESLIPVSEKDRVVGYRSEIADTL
GDDPDILVADAHYRFINELSSESIRRTSEKGESLSDRIDRVVLNRFAGIPIFLAVMYL
MFLFTINLGGAFIDFFDIAAGALFVDGFGELLHLSGSPEWLTAILATGLGGALQTIAT
FIPPIGFMFIALSLLEDSGYMARAAYVMDRGMRAIGLPGRAFIPLLVGFGCNIPAIMS
ARTMSDERDRILTIMMVPFMSCGARLPVYVLFAAAFFPSGGQNLVFLLYLIGVAVAVL
TGFILKSTLLKGDISPFIMEMPAYHIPTVKGVFMRVWDRLNSFLVRAGRVLVPVIMVL
GLMNSLGTDGTFGNEDSENSMLAVTGKAIAPVFVPMGISEDNWPATVGLFTGIFAKEA
VVGTLNSLYAGMGRTAAAVEGVSEESDLNLMERFGEAFRTIPENISAITGSLLDPLGI
SVGDVSDRAGVAEEQGVEVTIFGTMAALFDGTAGAFAYLLFVLLYFPCVAAIAAVYRE
TNLAWTLFAGAWTTGLAYILAVIAYQAPTYSSHPVSSAVWIAAMVGILAAAVVVMYLL
GSRGFRKKTGV"
misc_feature 351545..353749
/locus_tag="Cpha266_0321"
/note="ferrous iron transport protein B; Reviewed; Region:
feoB; PRK09554"
/db_xref="CDD:181948"
misc_feature 351545..351919
/locus_tag="Cpha266_0321"
/note="Ferrous iron transport protein B (FeoB) family;
Region: FeoB; cd01879"
/db_xref="CDD:206667"
misc_feature 351545..351556
/locus_tag="Cpha266_0321"
/note="Switch I region; other site"
/db_xref="CDD:206667"
misc_feature 351545..351547
/locus_tag="Cpha266_0321"
/note="G2 box; other site"
/db_xref="CDD:206667"
misc_feature 351602..351613
/locus_tag="Cpha266_0321"
/note="G3 box; other site"
/db_xref="CDD:206667"
misc_feature order(351611..351667,351677..351682)
/locus_tag="Cpha266_0321"
/note="Switch II region; other site"
/db_xref="CDD:206667"
misc_feature order(351782..351787,351791..351793,351869..351877)
/locus_tag="Cpha266_0321"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206667"
misc_feature 351782..351793
/locus_tag="Cpha266_0321"
/note="G4 box; other site"
/db_xref="CDD:206667"
misc_feature 351869..351877
/locus_tag="Cpha266_0321"
/note="G5 box; other site"
/db_xref="CDD:206667"
misc_feature 352490..352780
/locus_tag="Cpha266_0321"
/note="Nucleoside recognition; Region: Gate; pfam07670"
/db_xref="CDD:203716"
misc_feature 352805..352963
/locus_tag="Cpha266_0321"
/note="Ferrous iron transport protein B C terminus;
Region: FeoB_C; pfam07664"
/db_xref="CDD:203715"
gene 353759..354046
/locus_tag="Cpha266_0322"
/db_xref="GeneID:4570520"
CDS 353759..354046
/locus_tag="Cpha266_0322"
/note="KEGG: cte:CT1741 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910808.1"
/db_xref="GI:119356164"
/db_xref="GeneID:4570520"
/translation="MIFMGRRHVRLPAQIQNKRFSMTLTDLKGFIQERRRVSLSEIAG
YFKADMAMIESMLDHWIRKGRVQVKQADAFSASCCGKCGGHKQVWYTWVDG"
misc_feature 353825..354028
/locus_tag="Cpha266_0322"
/note="FeoC like transcriptional regulator; Region: FeoC;
pfam09012"
/db_xref="CDD:149920"
gene 354158..354511
/locus_tag="Cpha266_0323"
/db_xref="GeneID:4570521"
CDS 354158..354511
/locus_tag="Cpha266_0323"
/note="KEGG: cte:CT1739 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910809.1"
/db_xref="GI:119356165"
/db_xref="GeneID:4570521"
/translation="MNGNEKKRGRCSARCVVNKCSCGAFHLHYRYAVVIIGKQTLFQI
MEDCYRWEELNVGMSEGWCTKPFVVMLGIVTITVPQVDFEEFSKAIQDAVSLELDLPG
IAGGLLSFPGSSASK"
gene 354556..355062
/locus_tag="Cpha266_0324"
/db_xref="GeneID:4570522"
CDS 354556..355062
/locus_tag="Cpha266_0324"
/note="TIGRFAM: flavodoxin;
PFAM: flavodoxin/nitric oxide synthase;
KEGG: syn:sll0248 flavodoxin"
/codon_start=1
/transl_table=11
/product="flavodoxin"
/protein_id="YP_910810.1"
/db_xref="GI:119356166"
/db_xref="InterPro:IPR001094"
/db_xref="InterPro:IPR008254"
/db_xref="InterPro:IPR010086"
/db_xref="GeneID:4570522"
/translation="MKRIGLFWGSQTGNTELAATLIVEAIGSDIVQSYDIRGVDSGTF
GSYDSLILGTSTWGAGELQDDWDSFLPQFDAIDFIGKKVALFGLGDQLGYGDYFLDGM
GILYENLIGRGAKVTGSWSVDGYEHSYSRAIQYGAFVGLALDADNQNHLTPVRIKQWV
DQILPILL"
misc_feature 354556..355050
/locus_tag="Cpha266_0324"
/note="flavodoxin FldA; Validated; Region: PRK09267"
/db_xref="CDD:181740"
gene 355270..356934
/locus_tag="Cpha266_0325"
/db_xref="GeneID:4570523"
CDS 355270..356934
/locus_tag="Cpha266_0325"
/note="PFAM: transposase, IS4 family protein;
KEGG: tte:TTE2518 transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910811.1"
/db_xref="GI:119356167"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4570523"
/translation="MFVRVKSTPNSPRQSVQIVASERIGDKVKQRIVRYVGIAMNDEE
LVKMKELAEFIKAGLEAESAPTLFRPDELARMAIEGRKTADLSSDQPLTVDLKLLREE
SRVVVGIHEIYGKLFDELGFDRVLGNPARRVQAAKTIKHLVLARIANPASKRKSVIDL
ERDFGVKLDLSAVYRTLDYVDEQSIELIQKKAWEAATGLFGEKIDVVFYDCTTLYFES
FTDDELRDKGLSKENKHSEVQVLLAMMVSKHGFPLGYRLYNGATWEGHTLKDAIEQIK
GMAEVDRVVFVADSGLLSKENLALIEQSEKQYIVAARLKNQPETIKEQILDKAGYQQG
EQIRFKEIPLPENRRLLVSYSEKRARKDAFDRQKALDKLQKKLNKSKNPESFLKNTSY
RKYVKIEQLSQQTVIIDEEKISYTAQWDGLHGVITNITDITASDAFEHYRGLWQIEET
FRLTKHDLKVRPIYHWTPRRIEAHVAMCFMALVCIRHLSYRVQLQYQALSPEIIRNEL
VHVQQSILMHKTNGCRYGIPSKPTLHAQKIYQVMGEKLSATPFLIQ"
misc_feature 355735..356832
/locus_tag="Cpha266_0325"
/note="Transposase [DNA replication, recombination, and
repair]; Region: COG5421"
/db_xref="CDD:34980"
gene 357017..357337
/locus_tag="Cpha266_0326"
/pseudo
/db_xref="GeneID:4570524"
gene 357376..357720
/locus_tag="Cpha266_0327"
/pseudo
/db_xref="GeneID:4570525"
gene 357832..359403
/locus_tag="Cpha266_0328"
/db_xref="GeneID:4570526"
CDS 357832..359403
/locus_tag="Cpha266_0328"
/note="PFAM: Integrase, catalytic region;
KEGG: bfs:BF1534 putative transposase for insertion
sequence element IS21-like"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_910812.1"
/db_xref="GI:119356168"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:4570526"
/translation="MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRM
TDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTR
TIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRG
AILYTEAFRKYLLHRSLKIHLCRKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQ
EALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNT
ISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNN
HRRDTSSKLRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQK
LIDDALAHCVDHHLFSSGEFHDILHHYRKQEEKQSHQAVFNTFRPKTLRSDMDRMLSF
VPDSSGITTYENIFS"
misc_feature 357886..358725
/locus_tag="Cpha266_0328"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:34222"
misc_feature 358300..358608
/locus_tag="Cpha266_0328"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
gene 359409..360245
/locus_tag="Cpha266_0329"
/db_xref="GeneID:4570527"
CDS 359409..360245
/locus_tag="Cpha266_0329"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: bfs:BF1535 insertion sequence IS21-like putative
ATP-binding protein"
/codon_start=1
/transl_table=11
/product="IstB ATP binding domain-containing protein"
/protein_id="YP_910813.1"
/db_xref="GI:119356169"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4570527"
/translation="MERTITTIQEHARELNLTGLAGTVDLLLEEARKSEPSYSDFALT
LLESELSCRRKAHLERRRKIANLPLLHDLDHYDSGVQNGISQVQLQQLRQLLWLDQNF
NLILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRL
LSAHLLVIDDIMMFPLEKSVAVGLFQLVNQLHEQTSFIITTNKSPKEWAEMLGDEVLA
TALLDRLLYKCEVIKLTGKSYRLEHRTTIFEQQQSPEGGGNRRKKQLPLQKGVGNHCK
MT"
misc_feature 359442..360140
/locus_tag="Cpha266_0329"
/note="transposase; Provisional; Region: PRK06526"
/db_xref="CDD:180607"
misc_feature 359715..360023
/locus_tag="Cpha266_0329"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 359730..359753
/locus_tag="Cpha266_0329"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(359733..359756,359913..359915,360012..360014)
/locus_tag="Cpha266_0329"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 359901..359918
/locus_tag="Cpha266_0329"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 360264..360512
/locus_tag="Cpha266_0330"
/pseudo
/db_xref="GeneID:4570528"
gene 360566..361108
/locus_tag="Cpha266_0331"
/db_xref="GeneID:4570529"
CDS 360566..361108
/locus_tag="Cpha266_0331"
/note="KEGG: ana:all8069 transposase unknown protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910814.1"
/db_xref="GI:119356170"
/db_xref="GeneID:4570529"
/translation="MKTSILNRNGITPEIAGLITRLVTLIPWPARRQAMGDVVLTILD
GKPRVAENEFGWNRSAVALGIKEYESGIVCVNDLTERHKPKSEEKYPELLASIRKIME
PHSQAEPRLRTTLLYTNMTAQSVYNALLAEGWSEESLPAVRTISNILNRQKYRLRTVQ
KTKVEKKQQKQMPSSTTSGK"
misc_feature 360845..>361036
/locus_tag="Cpha266_0331"
/note="Rhodopirellula transposase DDE domain; Region:
DDE_Tnp_ISAZ013; pfam07592"
/db_xref="CDD:148936"
gene 361105..361797
/locus_tag="Cpha266_0332"
/db_xref="GeneID:4570530"
CDS 361105..361797
/locus_tag="Cpha266_0332"
/note="PFAM: Rhodopirellula transposase family protein;
KEGG: ana:all8069 transposase unknown protein"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_910815.1"
/db_xref="GI:119356171"
/db_xref="InterPro:IPR011518"
/db_xref="GeneID:4570530"
/translation="MNAWADEDPETVRLSIDTKATVLVGQYSRGGKSRGTEAVKAWDH
DMRPREKLVPGGILEPVSGKSFLFFGSSNKTSDFLVDGLELWWEERKSSLSHVKQLVI
NMDNGPECNGRRSQFLYRMTVFADMSGLDIRLIYYPPYHSKYNSIERYWAGLEKSWNG
YLLESVTTVINRAKSFTWRGIAATAMLIDTVYQKGIKLCGKEKKQMEKRLMRSKDLQW
WDISIRPEMVFL"
misc_feature <361108..361779
/locus_tag="Cpha266_0332"
/note="Rhodopirellula transposase DDE domain; Region:
DDE_Tnp_ISAZ013; pfam07592"
/db_xref="CDD:148936"
gene complement(361923..362387)
/locus_tag="Cpha266_0333"
/db_xref="GeneID:4570531"
CDS complement(361923..362387)
/locus_tag="Cpha266_0333"
/note="KEGG: plt:Plut_1933 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910816.1"
/db_xref="GI:119356172"
/db_xref="GeneID:4570531"
/translation="MNVHHILLDDNNPEHRELSICRTGTINRINLNDSKYQVYASFCI
DAHNYAALFHYGIIEAMNELHFISESGNGLDSWDEAFLHHSALSALLPIIRRCCESID
PQKKETILLGWQNQPVGVAWLRMIDPVKTAGFLRDFDTFIVESEGFDLEFIL"
gene 362562..365126
/locus_tag="Cpha266_0334"
/db_xref="GeneID:4570532"
CDS 362562..365126
/locus_tag="Cpha266_0334"
/note="PFAM: UvrB/UvrC protein; AAA ATPase, central domain
protein; Clp N terminal domain protein; ATPase associated
with various cellular activities, AAA_5; ATPase AAA-2
domain protein;
SMART: AAA ATPase;
KEGG: cte:CT0191 ATP-dependent Clp protease, ATP-binding
subunit ClpC"
/codon_start=1
/transl_table=11
/product="ATPase"
/protein_id="YP_910817.1"
/db_xref="GI:119356173"
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004176"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:4570532"
/translation="MEGNFSNRVQDVIRLSREEALRLGHDYIGTEHLLLGLIREGEGI
AARILKNLKIDLYRLKQKIEDSTHPKVPATQMGNVPLTKQAEKVLKITYLEAKICKSN
IIGTEHLLLSILKGEDNIASQILEQFGVSYDMVRDELLSITSGGTESDEPPAEGYASS
GGSERSAKKADPKRGERTKTPVLDNFGRDITRLALDDKLDPIIGREKEIERVAQVLSR
RKKNNPVLIGEPGVGKTAIAEGLALKIVQRKVSRVLYDKRVVALDLAALVAGTKYRGQ
FEERMKALMNELERSRDVILFIDELHTIIGAGGASGSLDASNIFKPALARGELQCIGA
TTLDEYRQYIEKDGALDRRFQKIMVEPATVDETILILNNIKSKYEVHHHVRYSEDAIE
KAVKLSERYITDRFLPDKAIDVMDEAGARVHLSNIHVPDEILELEKSIEAIKTEKNQV
VKMQNFEEAAKLRDKEKHLLESLDHAKQEWEDRAAESVYDVTETDITSVIAMMTGIPV
ARVAQSESKKLLSMEADLMKEVIGQDEAIKKITKAIQRTRAGLKDPSRPIGSFIFLGP
TGVGKTELAKALTRYIFDTEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTE
KVRRKPYSVVLIDEIEKAHPDVFNILLQVLDEGVLTDGLGRKVDFRNTIIIMTSNIGA
KDIKSFGAGSGMGFTAPDDASGSYKAMKSTIEDALKRVFNPEFLNRIDDIVVFHPLEK
QHIFKIIDITAGKLFKRLREMGIEVEIDEKAKEFLVDKGYDQKYGARPLKRALQKYVE
DPLAEEMLKGRFIEGSTIRILFDEDEGELRFIDGEPATKKRKRDEKLDKEVPDPNS"
misc_feature 362574..365048
/locus_tag="Cpha266_0334"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 362607..362756
/locus_tag="Cpha266_0334"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 362844..362987
/locus_tag="Cpha266_0334"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 363168..363644
/locus_tag="Cpha266_0334"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 363243..363266
/locus_tag="Cpha266_0334"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(363246..363269,363456..363458,363567..363569)
/locus_tag="Cpha266_0334"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 363444..363461
/locus_tag="Cpha266_0334"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 363618..363620
/locus_tag="Cpha266_0334"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 363870..363968
/locus_tag="Cpha266_0334"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature 364152..364598
/locus_tag="Cpha266_0334"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 364254..364277
/locus_tag="Cpha266_0334"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(364257..364280,364470..364472,364596..364598)
/locus_tag="Cpha266_0334"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 364458..364475
/locus_tag="Cpha266_0334"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 364773..365015
/locus_tag="Cpha266_0334"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(365166..366539)
/locus_tag="Cpha266_0335"
/db_xref="GeneID:4570533"
CDS complement(365166..366539)
/locus_tag="Cpha266_0335"
/EC_number="4.2.1.20"
/note="catalyzes the formation of L-tryptophan from indole
and L-serine"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_910818.1"
/db_xref="GI:119356174"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR006316"
/db_xref="InterPro:IPR006653"
/db_xref="GeneID:4570533"
/translation="MGTDLTKIILDEHEMPRQWYNIQADLPVPLPPPVGMDGTPISPD
DLAQVFPMNLIEQEMSTERWIDIPEEVLSILKLWRPSPLYRAKRLEKALGTPAKIFYK
NEGVSPAGSHKPNTAVPQAWYNKQFGIKYLTTETGAGQWGSALAMSCKLIGIECKVFM
VRISFDQKPFRKIMMKTWGAECIASPSRETAIGRRILEEMPDTPGSLGIAISEAIEQA
VEREDTRYALGSVLNHVMLHQSIIGLEAQKQFEKIGLYPDVVIGCAGGGSNFAGISFP
FICDKIHGKDIQIIATEPEACPTLTKGPYIYDSGDVALMTPLLAMHSLGHGFIPPAIH
AGGLRYHGMAPLVSHVKQLGLIEATALPQTECYEAALLFAHTEGFIPAPETSHAIAQT
IREAKKAKEEGKERVILMNWSGHGLMDLQGYDAFLSGKLSDYALPDELLQQSLAAVRN
HPKPPGA"
misc_feature complement(365271..366392)
/locus_tag="Cpha266_0335"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature complement(365370..366320)
/locus_tag="Cpha266_0335"
/note="Pyridoxal-phosphate dependent enzyme; Region: PALP;
pfam00291"
/db_xref="CDD:201135"
misc_feature complement(order(365301..365303,365388..365390,
365733..365747,365850..365852,366120..366122,
366201..366206))
/locus_tag="Cpha266_0335"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature complement(366201..366203)
/locus_tag="Cpha266_0335"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene complement(366885..366973)
/locus_tag="Cpha266_R0008"
/note="tRNA-Leu5"
/db_xref="GeneID:4570534"
tRNA complement(366885..366973)
/locus_tag="Cpha266_R0008"
/product="tRNA-Leu"
/db_xref="GeneID:4570534"
gene complement(367091..368158)
/locus_tag="Cpha266_0336"
/db_xref="GeneID:4570535"
CDS complement(367091..368158)
/locus_tag="Cpha266_0336"
/note="TIGRFAM: thiamine-monophosphate kinase;
PFAM: AIR synthase related protein domain protein;
KEGG: plt:Plut_1928 thiamine-monophosphate kinase"
/codon_start=1
/transl_table=11
/product="thiamine-monophosphate kinase"
/protein_id="YP_910819.1"
/db_xref="GI:119356175"
/db_xref="InterPro:IPR006283"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:4570535"
/translation="MPYKAISDLGEFGLIDRISSLVGPTLDASPNLLTGIGDDCAVYQ
PTAGMLEVTTTDLLVEKVHFDLLTTPLKHLGSKSISVNVSDICAMNATPQYALIGIAV
PPSFSVEMIEELYKGMSHAARIYGVAIAGGDTSVSRSGLFISVTMTGEVSGERLTRRS
GAKPGEMICVTGTLGGAAAGLRLLMREKNIMLEHIEHHEPYNKSLMVDLEEYADAIKE
QLLPAARIDIIRFFHSRNINPTAMIDISDGLSSDLRHLCNSSGTGAVIHEGRIPVHSG
ARRIADELRDDALGWSLTGGEDYQLLFTLPKERFPDIAEHDDISIIGEITEKDAGISL
VDIYGMSIDLEKLPGYDHFRS"
misc_feature complement(367100..368140)
/locus_tag="Cpha266_0336"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:180226"
misc_feature complement(367181..368131)
/locus_tag="Cpha266_0336"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature complement(order(367418..367423,367427..367429,
367682..367684,367760..367768,367814..367816,
367865..367867,367904..367906,368042..368050,
368114..368116))
/locus_tag="Cpha266_0336"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature complement(order(367721..367723,367727..367729,
367751..367762,367769..367771,367814..367816,
367982..367984,367988..367996,368039..368041,
368105..368107))
/locus_tag="Cpha266_0336"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene 368262..369212
/locus_tag="Cpha266_0337"
/db_xref="GeneID:4570536"
CDS 368262..369212
/locus_tag="Cpha266_0337"
/note="KEGG: cch:Cag_1212 cell division transporter
substrate-binding protein FtsY;
TIGRFAM: signal recognition particle-docking protein FtsY;
PFAM: GTP-binding signal recognition particle SRP54, G-
domain; GTP-binding signal recognition particle SRP54,
helical bundle;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="signal recognition particle-docking protein
FtsY"
/protein_id="YP_910820.1"
/db_xref="GI:119356176"
/db_xref="InterPro:IPR000897"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004390"
/db_xref="InterPro:IPR013822"
/db_xref="GeneID:4570536"
/translation="MGFFDKFKLSRLKEGLSKTSETFREKLSLITQGKTEIDEEFLEE
LEHILVGADVGVETTLSIVDAITERAKRESYRSAEELNRMLMEEIQQMLLDSGEHYPI
DFDAPLSAKPYVILVVGVNGAGKTTSVAKLAYNYEKAGKKVIIAAADTFRAAAYEQLK
IWADRAGVPLIGQGQGADPASVVYDAVSSAVSRNSDVVLVDTAGRLHNKSHLMEELAK
IMRVAKKKIPEAPHEVLLVLDGTTGQNAVSQAREFTRFVNVTGLVLTKLDGTSKGGIV
LSISRELNLPVKYIGVGEKIDDLQLFDRARFVEALLGRQE"
misc_feature 368268..369200
/locus_tag="Cpha266_0337"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:182441"
misc_feature 368295..368528
/locus_tag="Cpha266_0337"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; pfam02881"
/db_xref="CDD:202445"
misc_feature 368598..369134
/locus_tag="Cpha266_0337"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature 368616..368639
/locus_tag="Cpha266_0337"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature order(368706..368708,368871..368873,369054..369056,
369063..369068)
/locus_tag="Cpha266_0337"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
gene complement(369215..369784)
/locus_tag="Cpha266_0338"
/db_xref="GeneID:4569510"
CDS complement(369215..369784)
/locus_tag="Cpha266_0338"
/note="KEGG: cch:Cag_1211 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910821.1"
/db_xref="GI:119356177"
/db_xref="GeneID:4569510"
/translation="MPPDQFTIFGDNYPRGSYILFLKVSKPIRLSFGKFQGGRLLDVP
KGEYLYIGSALGSGKADKPLAQRLVRHASRSGNNKPQPIQKTLRLLFEPEASCKKAGT
TLHKKMHWHIDYLLDCPETEITHIVVVQSPLRLEPLLCNFISSLDTVEPLAKRLGAQD
TKNSTHLLKIADSEQLLLIIKNKIPELIA"
misc_feature complement(369281..369742)
/locus_tag="Cpha266_0338"
/note="GIY-YIG domain of hypothetical proteins from
archaea and their bacterial homologs; Region:
GIY-YIG_COG1833; cd10441"
/db_xref="CDD:198388"
misc_feature complement(order(369629..369637,369731..369739))
/locus_tag="Cpha266_0338"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198388"
misc_feature complement(order(369305..369307,369377..369379,
369572..369574,369584..369586,369629..369631,
369635..369637,369731..369733))
/locus_tag="Cpha266_0338"
/note="putative active site [active]"
/db_xref="CDD:198388"
misc_feature complement(369377..369379)
/locus_tag="Cpha266_0338"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198388"
gene 369907..370557
/locus_tag="Cpha266_0339"
/db_xref="GeneID:4569511"
CDS 369907..370557
/locus_tag="Cpha266_0339"
/EC_number="2.1.1.77"
/note="KEGG: cte:CT0202 protein-L-isoaspartate
(D-aspartate) O-methyltransferase;
TIGRFAM: protein-L-isoaspartate O-methyltransferase;
PFAM: protein-L-isoaspartate(D-aspartate)
O-methyltransferase"
/codon_start=1
/transl_table=11
/product="protein-L-isoaspartate O-methyltransferase"
/protein_id="YP_910822.1"
/db_xref="GI:119356178"
/db_xref="InterPro:IPR000682"
/db_xref="GeneID:4569511"
/translation="MDSNSRLMTFRRREMVEKLKLSGIADNRVLAAFLSVERHRFFDK
ESQEYAYADGAYPIGYGQTISQPYTVACMTSLLVERSPSGKVLEIGTGSGYQAAILYA
LGYRVYTIERVVELSEKAEKLFSALGFSIMCRSGDGTLGWPEEAPFDGIMVTAGAPHC
PETLLHQLALDGSLVVPIGAHGLQKMTVFQRKKDRFEKEVFSDFAFVPLIGREGWG"
misc_feature 369922..370551
/locus_tag="Cpha266_0339"
/note="protein-L-isoaspartate O-methyltransferase;
Reviewed; Region: pcm; PRK00312"
/db_xref="CDD:178974"
misc_feature 370159..370410
/locus_tag="Cpha266_0339"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(370171..370191,370237..370239,370312..370320,
370366..370368)
/locus_tag="Cpha266_0339"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 370590..372692
/locus_tag="Cpha266_0340"
/db_xref="GeneID:4569512"
CDS 370590..372692
/locus_tag="Cpha266_0340"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase;
KEGG: plt:Plut_1922 peptidyl-prolyl cis-trans isomerase,
PpiC-type"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_910823.1"
/db_xref="GI:119356179"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:4569512"
/translation="MAVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDI
AGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITPVTELEFRQQAWNIVVDQTLLEE
QFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQ
LEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSF
PVKEDEIQKYYNEHKELLKQLPSRSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAV
NDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAIVGPVADRGEYRLLK
IKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFETLAGKYSED
PGSAVQGGDLGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGFDQTAVI
ASEIVRTIRPSTETVDSARRLAMAFQMQAKDKGLEKSASTEKLVVGKTGDFGKHTLIA
DIGFSDKITAFAFNGKEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKKRITAEL
VRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFDQPL
VEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAERDVEAAKTAFTPKIIQDKLNRLF
TEYFATIKKNAVIEDLRP"
misc_feature 370689..371024
/locus_tag="Cpha266_0340"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:208773"
misc_feature 371247..371618
/locus_tag="Cpha266_0340"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:205326"
misc_feature 371634..371918
/locus_tag="Cpha266_0340"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
misc_feature <372009..372257
/locus_tag="Cpha266_0340"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:205326"
misc_feature 372264..372587
/locus_tag="Cpha266_0340"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:205326"
gene complement(372862..374670)
/locus_tag="Cpha266_0341"
/db_xref="GeneID:4569513"
CDS complement(372862..374670)
/locus_tag="Cpha266_0341"
/EC_number="2.7.3.9"
/note="TIGRFAM: phosphoenolpyruvate-protein
phosphotransferase;
PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile
region; PEP-utilising enzyme domain protein;
KEGG: plt:Plut_1914 phosphoenolpyruvate-protein
phosphotransferase"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate--protein phosphotransferase"
/protein_id="YP_910824.1"
/db_xref="GI:119356180"
/db_xref="InterPro:IPR000121"
/db_xref="InterPro:IPR006318"
/db_xref="InterPro:IPR008279"
/db_xref="InterPro:IPR008731"
/db_xref="GeneID:4569513"
/translation="MPEQKKNTLKGVLPSKKQSRSNRSDGGNIKPHEATFNGIGTSRG
IAIGECYAYEKEQYEHEITSLDNDNIEAEIERFIEAVHRSEKELKKIERVTTRKLGKG
YANIFQAQIMMLQDPMLIDSISLRIRSEMIPAHLVIEEEFGHYHEKFKSSDDVVFQER
ADDFFDIKNRILRNLHVRKMLSWIPEGTIVVSDHFCPGDIILLSRSNVKGFLSDSGGK
TSHISLICKSLNIPMVAGLGNFSQNAVSGTQMIIDGSSGTVIIHPEEKTIQLYQEKQK
AEKQSNADASLTATLPASTKCGVRINFFSNIDFKEELLGLKETGSEGIGLFRSENLFI
DGTKVPGESEQYHYYREMSETVAPQPFVVRLFDIGGDKLIYSPIREPNPNLGWRGIRI
LIDVPEILENQLRAVIRANALGNINILIPMITSLDEIMTICAMVDRLHAEVIEQTGVA
GEKPELGAMIEVPAAVEIIDEITKCVDFISLGTNDLTQYTLAVDRNNVIVQDLFEKFH
PAIIRQLHRVIATAQKNHCRVALCGDMGSDPLALPFLIGCGLRKFSVVSADIANLKRF
VSRYSVAETEALALECIKLDSAQKIKACLETFQAEH"
misc_feature complement(374188..374565)
/locus_tag="Cpha266_0341"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:203267"
misc_feature complement(372865..374559)
/locus_tag="Cpha266_0341"
/note="Phosphoenolpyruvate-protein kinase (PTS system EI
component in bacteria) [Carbohydrate transport and
metabolism]; Region: PtsA; COG1080"
/db_xref="CDD:31278"
misc_feature complement(373903..374121)
/locus_tag="Cpha266_0341"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(372964..373803)
/locus_tag="Cpha266_0341"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene complement(374682..376214)
/locus_tag="Cpha266_0342"
/db_xref="GeneID:4569514"
CDS complement(374682..376214)
/locus_tag="Cpha266_0342"
/note="KEGG: cch:Cag_1608 DnaB helicase;
TIGRFAM: replicative DNA helicase;
PFAM: DnaB domain protein helicase, N-terminal domain
protein; DnaB domain protein helicase, C-terminal domain
protein;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_910825.1"
/db_xref="GI:119356181"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR007692"
/db_xref="InterPro:IPR007693"
/db_xref="InterPro:IPR007694"
/db_xref="GeneID:4569514"
/translation="MIKPKADILDFSKDIDFNLEGRVPPYSTEIEQEVLACVLLEDDP
VEQVIQIFGDSAEEVFFERRHRLIFKSMMQLYNKRQAIDLITVSEELLKMNELDNIGG
RHYLAELSGKVISAANVEYYARLAKEKYLYRRMISISAKVSGAAYSSSMDIFDLVEHA
SQQFFNISQAGIKKKASPIKDLVKNGIRMLETLRASQSSITGVGSGFSDLDQFTAGFQ
SSDMIIIAARPSAGKTAFALALARNAAVDFNTPVLFFSLEMAEVQLAVRLMCAEAYVE
SQLVRTGRITPEMMSKIINSMDKLNEAKLFIDDTPGISIMELTAKTRRMKQEHNIGMV
VVDYLQLVTPVKDGKTNREQEIAQISRSLKALAKELNIPVIALAQLNRSVEQRSGDRR
PQLSDLRESGSIEQDADVVMFLSRPEMYNIQTFSDGSSTKNMVEVVIGKQRNGPIGDI
RILFLKQYGRFQSAATSYLSNTDEQNGGSANERNLPPEAPALQKTQMSANTFINADDA
PF"
misc_feature complement(374820..376148)
/locus_tag="Cpha266_0342"
/note="replicative DNA helicase; Region: DnaB; TIGR00665"
/db_xref="CDD:211596"
misc_feature complement(375831..376148)
/locus_tag="Cpha266_0342"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:201435"
misc_feature complement(374853..375590)
/locus_tag="Cpha266_0342"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:29985"
misc_feature complement(375513..375533)
/locus_tag="Cpha266_0342"
/note="Walker A motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(374853..374855,374886..374888,
374967..374969,375078..375080,375204..375206,
375513..375518))
/locus_tag="Cpha266_0342"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29985"
misc_feature complement(375204..375215)
/locus_tag="Cpha266_0342"
/note="Walker B motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(374913..374918,374967..374972,
375057..375083,375156..375164,375186..375191))
/locus_tag="Cpha266_0342"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:29985"
gene complement(376201..376872)
/locus_tag="Cpha266_0343"
/db_xref="GeneID:4569515"
CDS complement(376201..376872)
/locus_tag="Cpha266_0343"
/note="TIGRFAM: phage SPO1 DNA polymerase-related protein;
PFAM: Uracil-DNA glycosylase superfamily;
KEGG: cte:CT0206 DNA polymerase bacteriophage-type"
/codon_start=1
/transl_table=11
/product="phage SPO1 DNA polymerase-related protein"
/protein_id="YP_910826.1"
/db_xref="GI:119356182"
/db_xref="InterPro:IPR005122"
/db_xref="InterPro:IPR005273"
/db_xref="GeneID:4569515"
/translation="MHPFLFSDHDDTLPSVQSEAGAPFRDLIGLSLAVKSCTKCRLSA
SRKNVVFGEGDPRAALVVIGEAPGADEDSQGRPFVGRSGQLLDKILQAVQFKREEVFI
CNILKCRPPQNRNPLADEIECCMPWLLLQLELLNPKLILLLGKVAANTILQNSLSMGA
MRGRIVKWKAYDCMVTYHPAALLRNPGWKKACWEDVQMMRQHYDKLCSAEAHSRTMVT
NNDQA"
misc_feature complement(376273..376764)
/locus_tag="Cpha266_0343"
/note="Family 4 Uracil-DNA glycosylase (UDG), found
exclusively in thermophilic organisms; Region:
UDG_F4_TTUDGA_like; cd10030"
/db_xref="CDD:198428"
misc_feature complement(order(376492..376494,376501..376506,
376549..376557,376735..376737,376744..376749,
376753..376758,376762..376764))
/locus_tag="Cpha266_0343"
/note="Fe-S cluster binding site [ion binding]; other
site"
/db_xref="CDD:198428"
misc_feature complement(order(376339..376341,376561..376563,
376639..376644,376660..376662,376675..376683))
/locus_tag="Cpha266_0343"
/note="active site"
/db_xref="CDD:198428"
gene complement(376893..378125)
/locus_tag="Cpha266_0344"
/db_xref="GeneID:4569516"
CDS complement(376893..378125)
/locus_tag="Cpha266_0344"
/EC_number="4.1.1.36"
/EC_number="6.3.2.5"
/note="TIGRFAM: phosphopantothenoylcysteine
decarboxylase/phosphopantothenate--cysteine ligase;
PFAM: flavoprotein; DNA/pantothenate metabolism
flavoprotein domain protein;
KEGG: cte:CT0207 pantothenate metabolism flavoprotein"
/codon_start=1
/transl_table=11
/product="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="YP_910827.1"
/db_xref="GI:119356183"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR005252"
/db_xref="InterPro:IPR007085"
/db_xref="GeneID:4569516"
/translation="MLRGKNIIIAICGGIAAYKIPVLVRLLKKGGANVKVVLTASAAR
FVSELTLATVSQEQVYCSLFPPVERENVDYTRHISLGEWADIFVVAPATANTIAKLAA
GLCDDMLSACFLTLRPNKPVLLFPAMDGEMFTSSSVQRNLAMLLADGARIINPDSGEL
ASGQCGLGRMPEPEAIAALIEEELLKSCNKHSSLQGKSVVITAGPTREKIDDVRFISN
YSSGKMGFAIARAAAERGAKVTLLAGPVSLITPPLVERVDVESAKEMYDAARQLFETC
DVFVSAAAVADYRPDSPFQGKLKKNGEELSLTLRKNPDILAEFSKQKSPSQIAVGFAL
ECEDGLKNAIKKRIEKKLDLIALNFYDGKSSGFEVETNMLTLIGSDDTATVLPLLSKP
DAANRLLEAVEKLIQPDS"
misc_feature complement(376902..378125)
/locus_tag="Cpha266_0344"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:180143"
misc_feature complement(377712..378074)
/locus_tag="Cpha266_0344"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature complement(376995..377546)
/locus_tag="Cpha266_0344"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene complement(378181..382719)
/locus_tag="Cpha266_0345"
/db_xref="GeneID:4569517"
CDS complement(378181..382719)
/locus_tag="Cpha266_0345"
/note="KEGG: plt:Plut_1902 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910828.1"
/db_xref="GI:119356184"
/db_xref="GeneID:4569517"
/translation="MEKSKKVFIGFLALLSAGVLLLSIVAAIVLNSGFLDRFAKDLAV
KLFNEEFYGHLELQKVKLNFPNKVTILSPRIYEPDEDLPALSADKVTLRFNFLTILKP
KIDKLSFRKIKVDSLLINVIERENGKRNIDLIFTSRKPDSTDAPIESFFSKVVTLRNS
SLNYSRTLPNETPLALTVQNISLDLNSLRLKIKKKEFGGTIEALALDIPQHSFRLKQG
SGQFFVSEKRADIIALKATSDKSNAELSLSLDKFNIFDPDQKKLLLAGKSFLDIQALN
IHTRDLNMIYPDIALPEGVYSLKGDARSQSNTIEIIKGVLAHNKSHLAVKGKLLNVQN
KNAFGYQLEIDSSKIDPDFFQAFFSDKNQKELIARIGAISFIGKAHGNLKELSTDVHI
LTKAGNASIKGEAAGEPGKQIKGKGAFSLEKTLPHLFTGTTTAKSMLNATGNFDGIVN
GSELAELHIESDLKDSFWQQQALKQGTLSLDYSRELVRAKAILQNGMESIDVSGQISW
KGGSADYQAEGKVARLNLAKSLASNDFVTDLNGVFALKGSGFDPASLNAALTARFSPS
SINNFRLRDKSELSAAVEQHAASSTVTLKSDFLDLAVQGNQSFKELLGAIELAGSGIS
GEIRTQSLWSSRPAGPRSDAFLSLKKPFTVSYRILVKDMEPLSPLLPFRDLALQGSAE
GQFFYENGRCALTSSLDLGSLAYGKAVALKKLSATAAMECSGNGIPKAAIKGKAASLV
FSGQTSNNLVFDATYSTGRLTASIDAGRFENDREFSTAFSLQRTGSAYDLGFTKLAIG
KGKNRWQTQGGSHIKIEKMAVQFNRFTIANGNQHLVLNGELSNSRPGSFQCNLSHLDL
AALGELSEKRLPSGMSGTIDASLTISGNPNTKTSTLSINGKSVGFDKIPLGNVQSNIR
HAGNKLSFDYKSFITEPVNKGNTTPSVNTIAGSGTMPLVLAYYPFELRIPQEQKIQAS
FRSDNLSARFLKVVLPFVEDAAGIMPTTLTVEGTTSRPEIYLLSRLRDTQIKLEATQV
TYLLNGDIQVTPRQLELRDLRIADLQNGTGSLNGLLKIENLKPKTITLGANLSKLLLF
HKKDTRDEKPFGTIIGSTRNLLLNGDISSPVVEGDITINSADFTMYRPGANESAKYIG
VEKFIEFVPRYPSQQSMVAQTDLDSDPVGFNYSLIDILQLKDLKIRSAEQLKFRVIFD
RTRGEELEAAISGMQLMVNKSQQRYRLFGSVALSDGKYRFSNTNFDLEDGGKIVWNNV
GIHEGIMQNLYGTKYISALSPETGDRDNVKLLLAISGTISEPNVEMGYYLNDQMQPFS
SKNLIGGKPSQIDPNAELNVISMLLTSQWYAPQGSSGLSKNLAVSSVGLSTGSGLISS
QLSRLVQNVAGFESFNVNLGMNSKGEISGIDLYMAVNVPGTNGKVRIIGEGSSHDVKN
KPLFNYYGTSQKVEYRVSPKVYIEAYRSYGQTENEAANTNLQSPTETWGASISYRERF
HTWDSFWKRIIPSSNKKK"
sig_peptide complement(382639..382719)
/locus_tag="Cpha266_0345"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.998) with cleavage site probability 0.410 at
residue 27"
misc_feature complement(378238..379578)
/locus_tag="Cpha266_0345"
/note="Family of unknown function (DUF490); Region:
DUF490; pfam04357"
/db_xref="CDD:202984"
gene complement(382706..383263)
/locus_tag="Cpha266_0346"
/db_xref="GeneID:4569518"
CDS complement(382706..383263)
/locus_tag="Cpha266_0346"
/note="TIGRFAM: cytidyltransferase-related domain; rfaE
bifunctional protein;
PFAM: cytidylyltransferase;
KEGG: plt:Plut_1901 RfaE bifunctional protein, domain II"
/codon_start=1
/transl_table=11
/product="rfaE bifunctional protein"
/protein_id="YP_910829.1"
/db_xref="GI:119356185"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="InterPro:IPR011914"
/db_xref="GeneID:4569518"
/translation="MLVLQLHVIFLQLADRYLMNSKLLTRAKAKEQVIAWQSSGKKVV
FSNGCFDILHAGHVQYLSRARQLGDILLIGLNSDASIQRIKGPLRPVCAEQDRAAVLS
ALQMVDAITLFDEDTPEALIEALLPDILVKGADWDIERIAGAKAVLQSGGKVLTLPIL
EGRSTTGIIEKVIQIYGKHTPRGKE"
misc_feature complement(382748..383170)
/locus_tag="Cpha266_0346"
/note="rfaE bifunctional protein, domain II; Region:
rfaE_dom_II; TIGR02199"
/db_xref="CDD:131254"
misc_feature complement(382751..383125)
/locus_tag="Cpha266_0346"
/note="Cytidylyltransferase; Region: CTP_transf_2;
pfam01467"
/db_xref="CDD:201811"
misc_feature complement(383093..383104)
/locus_tag="Cpha266_0346"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(383093..383104)
/locus_tag="Cpha266_0346"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(order(383093..383095,383102..383104))
/locus_tag="Cpha266_0346"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
gene 383525..384421
/locus_tag="Cpha266_0347"
/db_xref="GeneID:4569519"
CDS 383525..384421
/locus_tag="Cpha266_0347"
/note="PFAM: lipid A biosynthesis acyltransferase;
KEGG: cch:Cag_1483 acyltransferase, HtrB/MsbB family"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis acyltransferase"
/protein_id="YP_910830.1"
/db_xref="GI:119356186"
/db_xref="InterPro:IPR004960"
/db_xref="GeneID:4569519"
/translation="MTDPSITNKQSSDRRIYKLFMLFSVLVRKMNRKTALFMADRLGD
LMFDILKIRKPLVEGNLSITFPEKSANEIRSIARRVYRNQARNFIEVLRLPLIASRED
AEELFDINASQLSDILQRSGVVLVSAHFGNWELLGFCAGIMVTPLTIVVKRLRNDDVD
RCINTWRTMKGNTVVKKSRALREGLKTLRNKGIVSFLADQSDPEGTFVTDFLGRPSSV
FLGPAYLALKTRVPLFVCMAYRKEDGRHTVDIEQIPTEDLKDSREDFEELARRYTRAI
DKAIRVRPEEWFWLHDRWKRTF"
misc_feature 383600..384412
/locus_tag="Cpha266_0347"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature 383888..384409
/locus_tag="Cpha266_0347"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature order(383909..383911,383918..383920,383924..383926,
383975..383986,384122..384127)
/locus_tag="Cpha266_0347"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(384737..386182)
/locus_tag="Cpha266_0348"
/db_xref="GeneID:4569520"
CDS complement(384737..386182)
/locus_tag="Cpha266_0348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910831.1"
/db_xref="GI:119356187"
/db_xref="GeneID:4569520"
/translation="MQINSSDRTQSISSIWHHRLIRFFSSTTTQYIAAGLSLILIFNT
YYLLIDMKVFGHDEVHYYTDFTFKLKEEGRWANYFLHKLLRHIPLQTHVILFLSSLWG
VFYYISKNLTKESWYSIIIASVLLIETPNAYQSLWPATVLPTTISLLLLAWMAQKDIS
YKVIYLVGGVLLFGMMQNYYFLLPLLFLGHYKFDKTSINSTIPLVTTHLLFWITGAVS
GLVVASLIVYIHTGQAGIIPAEWRLIMPAHDISTLLRNIIYVFQNLTEQLVVFWKNSA
SNGFLYPLLLIIFTFARLKNSFSNLYISIILSAVFLSFFIFSIPLAPIIQTRSLVAFS
SSLILLFFIESKQLLFPRWLSVFLLLWTGLNLSISGRSYLYEHKTQSEFVLNKIEAAF
SHHPANYTAVAVFGHVDNKYKEAFLFNNPERLRPIILTLGANHFIDGRVDTQQKSLLT
EAVNIDTTSANNKIKLFVTKKNVAVILLEKN"
gene complement(386294..386677)
/locus_tag="Cpha266_0349"
/db_xref="GeneID:4569521"
CDS complement(386294..386677)
/locus_tag="Cpha266_0349"
/note="PFAM: GtrA family protein;
KEGG: pma:Pro0382 hypothetical protein"
/codon_start=1
/transl_table=11
/product="GtrA family protein"
/protein_id="YP_910832.1"
/db_xref="GI:119356188"
/db_xref="InterPro:IPR007267"
/db_xref="GeneID:4569521"
/translation="MITISSEIIRYLITGIFNTLVGYGTFFVFYRFVNLSPELSNAIG
YGIGLISAFILNRLFVFKRTIFSFGAFLRFVLSFIISFILNLAILYYFHRSLHVIPEI
AQIAAMIAYTIIFYLLNKYFVWKHK"
misc_feature complement(386306..386650)
/locus_tag="Cpha266_0349"
/note="GtrA-like protein; Region: GtrA; pfam04138"
/db_xref="CDD:202906"
gene complement(386658..387659)
/locus_tag="Cpha266_0350"
/db_xref="GeneID:4569522"
CDS complement(386658..387659)
/locus_tag="Cpha266_0350"
/note="PFAM: glycosyl transferase, family 2;
KEGG: pma:Pro0380 glycosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_910833.1"
/db_xref="GI:119356189"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:4569522"
/translation="MQLLSLVIPCYNEEAVIDETIKRLKTFCSERNDLDVELILVDDG
SRDRTRMLLKSYASDDTRIKVIVFARNFGHQIAVTAGIDAARGDAVVLIDADLQDPPE
VIHKMIAKWREGYDVIYGTRAVRIGESAFKQFSARFFYRFLNKLSDIPIPLDTGDFRL
MSRDVVDTLKAMPENDRFVRGMVSWVGFKQTALPYTRQERFAGESKYPLKKMLRFAND
GILSFSTKPLQISISLGLLSAALAFAGIIYALLVRIFTYNWVEGWAGIMIAVLFLGGI
QLISVGILGEYIGRIYNEVKKRPLYVVEEYVGFNSEDLKMSRSPVIRHFSYHDNHIK"
misc_feature complement(386727..387650)
/locus_tag="Cpha266_0350"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature complement(387096..387644)
/locus_tag="Cpha266_0350"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature complement(order(387372..387374,387627..387629,
387633..387635))
/locus_tag="Cpha266_0350"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature complement(order(387372..387377,387531..387533))
/locus_tag="Cpha266_0350"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature complement(387372..387380)
/locus_tag="Cpha266_0350"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene complement(387683..390667)
/locus_tag="Cpha266_0351"
/db_xref="GeneID:4569523"
CDS complement(387683..390667)
/locus_tag="Cpha266_0351"
/note="PFAM: glycosyl transferase, family 2; glycosyl
transferase, group 1;
KEGG: xom:XOO_1639 glycosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_910834.1"
/db_xref="GI:119356190"
/db_xref="InterPro:IPR001173"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4569523"
/translation="MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTH
SGNSYFSFCQSVKYNSLPTLCYAIYSCLNNEQTELYNADIIDSLLTYNNEHYQAFSNV
TGNTYYNALSFFEDASIDILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASEN
NTEVYKLWGYVKNIYPNLTIEHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTL
FEKIGNTIEMDFQIRRLLNSLKEADTMIDMLNQTISNRETVINKLIQTIEKNDETIKS
FSKKHDFVKVKPLRKLKKSIRKRAHTLSKLFFKVEDKNHLSVNTHNSNAEWFLKEYKN
IACSDNKHCFHYKFGIIDHLAENNSFFKESKPTASIIIPVYGNISYTIKCIESLLNLP
DSTSFEIIIIDDHSPDNSYETLNKISQIKLIRNDCNKGFIHSCNSGASLATGEYLIFL
NNDTEVLNAWLDSLIAPFIIHDNVGLVGSQIIYPDGRLQEAGGVILSDGSGLNYGRLS
DPNKPEYNFLREVDYCSGCSIAIKKSLFDSIGGFDTLFIPAYYEDTDIAFTVRKMGYK
VLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKIKFYNKWETQLKSHNILPDNYSLAK
CKYYKDTILFIDACTPTPDKDSGSVDAFFHQYIFTKLNFKVTFIPDNLIFLDGYTQVL
QQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIAVKHINAIKKYCPNSILIFNL
VDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDVNIIISESEVKHLSKIDPE
LKLFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLYFSREIWPLVKTRLVDA
HFIIIGSEMPNEIINLHNQNGILSIGYIEDLSPFFNSCKFSIAPLRYGAGQKGKLARS
GSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSILWEKLSKNIYDY
TNSEYSITKGISRISNLIHALN"
misc_feature complement(390203..390553)
/locus_tag="Cpha266_0351"
/note="Methyltransferase domain; Region: Methyltransf_24;
pfam13578"
/db_xref="CDD:205756"
misc_feature complement(388763..389578)
/locus_tag="Cpha266_0351"
/note="Predicted glycosyltransferases [General function
prediction only]; Region: COG1216"
/db_xref="CDD:31409"
misc_feature complement(388931..389560)
/locus_tag="Cpha266_0351"
/note="Subfamily of Glycosyltransferase Family GT2 of
unknown function; Region: GT_2_like_c; cd04186"
/db_xref="CDD:133029"
misc_feature complement(order(389309..389314,389456..389458))
/locus_tag="Cpha266_0351"
/note="Probable Catalytic site; other site"
/db_xref="CDD:133029"
misc_feature complement(order(389003..389005,389009..389011,
389309..389311))
/locus_tag="Cpha266_0351"
/note="metal-binding site"
/db_xref="CDD:133029"
misc_feature complement(387794..388204)
/locus_tag="Cpha266_0351"
/note="Glycosyl transferases group 1; Region:
Glyco_trans_1_4; pfam13692"
/db_xref="CDD:205868"
gene complement(391265..392671)
/locus_tag="Cpha266_0352"
/db_xref="GeneID:4569524"
CDS complement(391265..392671)
/locus_tag="Cpha266_0352"
/note="PFAM: transposase, IS4 family protein;
KEGG: mes:Meso_4308 transposase, IS4"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_910835.1"
/db_xref="GI:119356191"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:4569524"
/translation="MQLPYTNIHTDQPNQQALFPDCFEVSVAPVKGKKVVLDFQGGNA
TSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHSIPDLIAQRVYQIACGYEDGN
DSNSMRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSY
TEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGR
RPTGKEIVSYVKRIVRHIRSRWPETIIVYRGDSHYGVPEVYSFLAREQNCYSVTGLGG
NDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWKETRRVVAKVEMTEKGLNVRFIS
TDMQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYV
LVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKC
FAVLEHLRSVPWPSTAIP"
misc_feature complement(391289..392593)
/locus_tag="Cpha266_0352"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:205876"
gene 392896..394815
/locus_tag="Cpha266_0353"
/db_xref="GeneID:4569525"
CDS 392896..394815
/locus_tag="Cpha266_0353"
/note="PFAM: ABC transporter, transmembrane region; ABC
transporter related;
SMART: AAA ATPase;
KEGG: cch:Cag_1482 ATPase"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_910836.1"
/db_xref="GI:119356192"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:4569525"
/translation="MNLLLRMLRYLAPSKGKIALVVVVSIITSFLSVISIYSILPLLN
AVFETGPVTRTEATHTESDGKSRQEESMQKATPLKPAIGNGFVNFDELKKNALVTFQH
AFHAETKERSLLNICLFLIAAFAVKNIFVYLNGQLIFRIQTKTAKKLRDDVFRSIIEM
HLDYFNKNRVGNLMNYVYNDVENVNASISSTLVNFLQNPFSIFVYMVVLFALSWQLTL
FAAFTSLLIFFLIQLVGKNVKGLALTFQTRMGDMNSVLQEKFNGIKVIKATAFEDVEL
ERFKEFTRDFRTLGIKIQQMRNVISPLNETLLVAAIAGVLWFGGLQVFKGVMTANELI
VFAFTLYSTMGPIKMLGNANTSIQIGLISVERLFEVLDAEAVVVNGTRSITGFSHTIR
FEDVCFRYLKEPDAPNVLDHVTFEIKKGEMVALVGQSGSGKSTAVDLLLRFYDVDSGR
ITIDGVDIRDYDFKQLRRMIGVVSQEVILFNDSIDANIAYGVRDEIGHGRVEQAARLA
NAHQFISEKPDGYNTLIGDRGIQLSGGQRQRLAIARAMVKNPELLIFDEATSALDNES
EKVVQQAIDHALANRTALVVAHRLSTVKNADRIIVMERGQVAESGNHEELLQADGLYR
KLYEIQFAGKTERAS"
misc_feature 393214..394791
/locus_tag="Cpha266_0353"
/note="lipid A export permease/ATP-binding protein MsbA;
Region: MsbA_lipidA; TIGR02203"
/db_xref="CDD:131258"
misc_feature 393229..393927
/locus_tag="Cpha266_0353"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 394066..394776
/locus_tag="Cpha266_0353"
/note="MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters are
a large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic...; Region: ABCC_MsbA;
cd03251"
/db_xref="CDD:73010"
misc_feature 394174..394197
/locus_tag="Cpha266_0353"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73010"
misc_feature order(394183..394188,394192..394200,394318..394320,
394561..394566,394657..394659)
/locus_tag="Cpha266_0353"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73010"
misc_feature 394309..394320
/locus_tag="Cpha266_0353"
/note="Q-loop/lid; other site"
/db_xref="CDD:73010"
misc_feature 394489..394518
/locus_tag="Cpha266_0353"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73010"
misc_feature 394549..394566
/locus_tag="Cpha266_0353"
/note="Walker B; other site"
/db_xref="CDD:73010"
misc_feature 394573..394584
/locus_tag="Cpha266_0353"
/note="D-loop; other site"
/db_xref="CDD:73010"
misc_feature 394645..394665
/locus_tag="Cpha266_0353"
/note="H-loop/switch region; other site"
/db_xref="CDD:73010"
gene complement(394874..396850)
/locus_tag="Cpha266_0354"
/db_xref="GeneID:4569526"
CDS complement(394874..396850)
/locus_tag="Cpha266_0354"
/note="PFAM: glycosyl transferase, family 2;
KEGG: bcn:Bcen_0396 glycosyl transferase, family 2"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_910837.1"
/db_xref="GI:119356193"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:4569526"
/translation="MIRADQKAQNDFGAGECLDTELITRNNDLQALLSEQERRIYDLL
QQYHKNESELRSVYNTPIGKIVRYYKTIKQKKKTQKNAEKNDYNIWLNKYDLLTEKRR
KNIIAEIATKRESPLISVFMRLNKRSLSSLEQSVQSVKAQLYPHWELCIIAEASQHTE
AETAIRKFVENDARITRHVKKETNTISEASNAALELAGGEFFALLESGDTIHPLALYH
VAQEVMRYPEAGLLYSDEDSLDNNNKRVNPFFKPDFNYDLFLCQNMVGNLAVFKTSLA
RQTGGFKRELDGAQDYDLALRFYEKLKPEQIRHIPRVLYHKRISRSGTIAATETQISG
NQEAALLAVNHHLKRTGIEATVEKAPEYPECNRIRYTIPNTPPSVDIIIPTKDMANLL
KICVLSILAKTTYNNYSITIIDNGSKEQNTLDLLKQWKNDSRIRIIRDDETPFNYSKL
NNRAVHSSSADFICLMNNDIEIITPEWLNEMMGHAIQPGVGAVGARLWYPNATLQHAG
VITGMYTGTGHAHKKYPKGNPGYFGRACLQQEYSAVTGACLLINRINYLHVAGLNEQE
LTVAFNDIELCLKLKKKGLRNIWTPYAEMFHHESLTRGRNDTPEKKELAGKELAYMQN
TWGIDKNHDPAYNPNLSITSDDFSLSWPPRILDR"
misc_feature complement(395894..396505)
/locus_tag="Cpha266_0354"
/note="Myxococcus xanthus RfbC like proteins are required
for O-antigen biosynthesis; Region: GT2_RfbC_Mx_like;
cd04184"
/db_xref="CDD:133027"
misc_feature complement(order(395978..395980,396227..396232,
396389..396391))
/locus_tag="Cpha266_0354"
/note="Probable Catalytic site; other site"
/db_xref="CDD:133027"
misc_feature complement(order(395972..395974,395978..395980,
396227..396229))
/locus_tag="Cpha266_0354"
/note="metal-binding site"
/db_xref="CDD:133027"
misc_feature complement(395060..395722)
/locus_tag="Cpha266_0354"
/note="Glycosyltransferase like family 2; Region:
Glyco_tranf_2_3; pfam13641"
/db_xref="CDD:205818"
misc_feature complement(395054..395710)
/locus_tag="Cpha266_0354"
/note="Subfamily of Glycosyltransferase Family GT2 of
unknown function; Region: GT_2_like_c; cd04186"
/db_xref="CDD:133029"
misc_feature complement(order(395444..395449,395606..395608))
/locus_tag="Cpha266_0354"
/note="Probable Catalytic site; other site"
/db_xref="CDD:133029"
misc_feature complement(order(395126..395128,395132..395134,
395444..395446))
/locus_tag="Cpha266_0354"
/note="metal-binding site"
/db_xref="CDD:133029"
gene complement(396890..398017)
/locus_tag="Cpha266_0355"
/db_xref="GeneID:4569527"
CDS complement(396890..398017)
/locus_tag="Cpha266_0355"
/note="PFAM: glycosyl transferase, group 1;
KEGG: gbe:GbCGDNIH1_0248 glycosyltransferase"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_910838.1"
/db_xref="GI:119356194"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4569527"
/translation="MKIVYIARSAIPSRDANSIHVMKMCQAFADNGHEVIFLLPDRSS
GCEPGINDIYAYYGVKRNFQIRKFEYQHLKVKFVSQIRQMQKSLHELDPDLVYGRCFL
GCTIACLSGYKTIYESHLPLWRSGNIKKLWFSLVTRNRNFKRLVVISEALKTLYSNEN
IISQDKLFVAHDGADKVIDFQSKAELSGEKERLHVGYSGHLYQGKGVEVIAGVAPLMT
EVNFHIIGGKENDIAYWKSVIKSDNVFFYGFKNQTELPKYLNSFDICLLPNQKVVLPC
GKRDEKRNISDFTSPLKMFEYMAHKKAIISSDLPVLREVLNESNALLVQCDDFQQWAD
AITALQDKNKREAIAQQAYEDFMTSYTWKIRAEQVLSNVIK"
misc_feature complement(396905..398017)
/locus_tag="Cpha266_0355"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(396908..398014)
/locus_tag="Cpha266_0355"
/note="This family is most closely related to the GT1
family of glycosyltransferases and named after YqgM in
Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to...; Region:
GT1_YqgM_like; cd03801"
/db_xref="CDD:99974"
gene complement(398040..398993)
/locus_tag="Cpha266_0356"
/db_xref="GeneID:4569528"
CDS complement(398040..398993)
/locus_tag="Cpha266_0356"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910839.1"
/db_xref="GI:119356195"
/db_xref="GeneID:4569528"
/translation="MIINRLLQFFHLFILYRFGSAIGDQLCMTAIIENLFTEHRLKSV
VFSSYPEFFENNPNVCKNYSFKRMPKFFRNILLSLLRIAEGENIANFCFPKKKDGGLE
CFMRKSKAKISLIEAHSCYFKKKLILLQATPKIYFSDEELAVFSRKFSDLPDRFGIVQ
PVGKTTYTPNKEWGFANFQKVIDSAPHFPWLQTGMINELLLDHVIDFRGKTESLRELA
YIVSRADFILCLEGLLNHLAASVGTRSFCLFSGFHPVEIANYATTIPVVLDPQPDCSP
CWRLEKCPQKSKYCTEGILPEQVIKVITTAPSLNNQPAIKL"
misc_feature complement(398085..398954)
/locus_tag="Cpha266_0356"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(<398547..>398909)
/locus_tag="Cpha266_0356"
/note="Phosphoenolpyruvate carboxylase; Region: PEPcase;
cl14656"
/db_xref="CDD:209882"
misc_feature complement(398082..>398558)
/locus_tag="Cpha266_0356"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene complement(399139..400308)
/locus_tag="Cpha266_0357"
/db_xref="GeneID:4569335"
CDS complement(399139..400308)
/locus_tag="Cpha266_0357"
/note="PFAM: glycosyl transferase, group 1;
KEGG: cpe:CPE2219 probable mannosyltransferase B"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_910840.1"
/db_xref="GI:119356196"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4569335"
/translation="MALRNQSKQLHQKSNALNNRKKSTMNITYDVVKTAGYSGNLTYT
KDLISALALHFPDNRYRLLTQLNKKKDVEAFFGKNNSFEYRNILLNERMLGEKGRPFF
QAINLSVLREAANHTDMYHATNPTHFPDGIKNGVVTLHDLIALLPESWASVDSRTFYH
KKISSILQQAKLVFTVSEFTRSDAQHYFPKYADKYVATPLAANPAFRQISTNRNFLLQ
YGIADPLKPYLLYVGEIQPRKNIEGLLRAFEALPSALQHELQIIIVGHAKRKENLTLF
HDAINDMKSRAPVYHLRNVPLVDLVKLYNAAHAFVYLSFYEGFGLPIIEAMSCGCPVL
TSKTTSLGEVAADAALTIDPRDHEEITEALKQLLEEGETRKKLIEKGLLRAQEFS"
misc_feature complement(399142..400233)
/locus_tag="Cpha266_0357"
/note="This family is most closely related to the GT1
family of glycosyltransferases. mtfB (mannosyltransferase
B) in E. coli has been shown to direct the growth of the
O9-specific polysaccharide chain. It transfers two
mannoses into the position 3 of the...; Region:
GT1_mtfB_like; cd03809"
/db_xref="CDD:99981"
misc_feature complement(399148..400203)
/locus_tag="Cpha266_0357"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene complement(400322..401470)
/locus_tag="Cpha266_0358"
/db_xref="GeneID:4569336"
CDS complement(400322..401470)
/locus_tag="Cpha266_0358"
/note="PFAM: glycosyl transferase, group 1;
KEGG: mma:MM0650 mannosyltransferase"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_910841.1"
/db_xref="GI:119356197"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4569336"
/translation="MNIGIDFTHDLGYSGIGTYCRSLTEAMAQREPENIYNILTLHHK
IPEVQQHFSNLRAIVYSAPFPNPMLLGGKCNKMIRKYHQTIWKKKAANYDLVHFTHQG
YFVPGIENAAVTIHDLIKLYNKSYTAIETTHPLFLTTKKMINDAATIFVPSEFVRNEL
RNYFAGCEKKVKVTYEGIKPVYRQTPPDPAVLKKYDLLDNGRFFLYVGRYESRKNLDR
LILAYAQLPDTLKKDTLLVLICPTEKKSTKELQKKIAGAGLEKNVLHLVHVPDNDLVH
LYNAALALLFVSFSEGFGLPLVEAMNCGCPAIIANSSSLPEISGSSSLLVDPYDTESI
RQAMLAISEDSLLRNDLSKKCIVRAQRFSWQTTAQETLKGYHAMLNKP"
misc_feature complement(400328..401470)
/locus_tag="Cpha266_0358"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(400352..401467)
/locus_tag="Cpha266_0358"
/note="This family is most closely related to the GT1
family of glycosyltransferases. mtfB (mannosyltransferase
B) in E. coli has been shown to direct the growth of the
O9-specific polysaccharide chain. It transfers two
mannoses into the position 3 of the...; Region:
GT1_mtfB_like; cd03809"
/db_xref="CDD:99981"
gene complement(401533..402627)
/locus_tag="Cpha266_0359"
/db_xref="GeneID:4569337"
CDS complement(401533..402627)
/locus_tag="Cpha266_0359"
/note="PFAM: glycosyl transferase, group 1;
KEGG: cte:CT0224 glycosyl transferase"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_910842.1"
/db_xref="GI:119356198"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4569337"
/translation="MNILFVNSIGRDKFGGGEKWMINAAKELAKRGHNVVLGSKKNSR
TLHYAKANGVKTTIFEIRSDISPLSTLKVAAFLKRHAIDVLICNLNKDVRVAGLAAQI
VQTPIVLARHGMLLCDNKWKHKVTLTKLVDGIITNSNTIKESYKNYGWFGDNFVKVIY
NGIIIPEKIVAHDFSARFPGKKIIYSAGRLSEQKGFTYLIETAAILKQTRNDLVFAIS
GEGKLEIDLKKQVAHAGLADSFIFMGFTDNIYPYLKGCDLFVLASLFEGMPNVVMEAM
AMKKAVIATDVNGARELMVDGKTGIIVPPKQPAALACAIDKIIDNPDMLEEFGKAGYE
RVTHEFTMTAMGNKLEKHLQEKIVAKQRLK"
misc_feature complement(401548..402627)
/locus_tag="Cpha266_0359"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(401608..402624)
/locus_tag="Cpha266_0359"
/note="This family is most closely related to the GT1
family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core; Region: GT1_WabH_like; cd03811"
/db_xref="CDD:99982"
misc_feature complement(order(401815..401817,401881..401883,
402061..402069,402580..402582))
/locus_tag="Cpha266_0359"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99982"
gene complement(402684..403793)
/locus_tag="Cpha266_0360"
/db_xref="GeneID:4569338"
CDS complement(402684..403793)
/locus_tag="Cpha266_0360"
/note="PFAM: glycosyl transferase, family 9;
KEGG: cte:CT0221 heptosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_910843.1"
/db_xref="GI:119356199"
/db_xref="InterPro:IPR002201"
/db_xref="GeneID:4569338"
/translation="MKIPFMNSSRTLGKKNKLFRKLFTRTLQLIVHKREPLRQFTGPL
NSIVILAQEKIGDSILLTPLLSNLRHYFPDLEIHLICFSEASVNFFRNDPHITAIHSV
KKNIVRYYKDVLSREFDLLFNTKDSPSTNFLIQTLLIRARFKAGHAHPYHEGIFNHLI
TIEYHTRMAVKNCSILPLLSIRVEEKKYRPYLPPAPVSSAIKRFSEKINNDVLTGLNI
SAGGPLRCWTEAKWSALIKGFPDMQFVIFSAPGDTHIKLRLEQHDNVTVSPPTANIYE
VGLLVKHLRLLVTPDTSLVHVASCYNIPVIGLYTSAPQDLSRFGPYLVDFEIITSSTS
QVSDIEVEAVTSVMQNKLQQQLDMTADRTTGNNRQ"
misc_feature complement(402732..403658)
/locus_tag="Cpha266_0360"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature complement(402807..403658)
/locus_tag="Cpha266_0360"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(402903..402905,402912..402917,
402924..402926,402960..402965,403053..403055,
403143..403148))
/locus_tag="Cpha266_0360"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 404366..405319
/locus_tag="Cpha266_0361"
/db_xref="GeneID:4569339"
CDS 404366..405319
/locus_tag="Cpha266_0361"
/note="PFAM: Abortive infection protein;
KEGG: plt:Plut_1789 hypothetical protein"
/codon_start=1
/transl_table=11
/product="abortive infection protein"
/protein_id="YP_910844.1"
/db_xref="GI:119356200"
/db_xref="InterPro:IPR003675"
/db_xref="GeneID:4569339"
/translation="MKAQKSLHAEPSLVRRPSFIMNTLILFGIMMLYQVMGSLLLLKI
TAIDLSLLFSLDDQARTISLMRIMQVASQLLLLALPVLLLAKRHTGGEHLFSAKTLAF
LGIRRNGSQALALWAVLGVFCLQPLMQTIAELQQLFLWPALGEAGKQVVENQKAMDRI
IAALAVMRSLPEAVAVVAVLAVTPAMCEEVLFRGYIQENYRQSIDPRGAVILTGFVFA
VFHLSAANFVPLTILGCYIGYVYLNAGTLFVPFAVHLFNNLAALALLSMGSGSGSADA
GASFSGVVGFWWWWLVVAGSLGLFFLCMVMFRAASFSQRRQ"
misc_feature 404924..405139
/locus_tag="Cpha266_0361"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:202269"
gene 405339..406193
/locus_tag="Cpha266_0362"
/db_xref="GeneID:4569340"
CDS 405339..406193
/locus_tag="Cpha266_0362"
/note="PFAM: phosphatidate cytidylyltransferase;
KEGG: plt:Plut_1788 phosphatidate cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_910845.1"
/db_xref="GI:119356201"
/db_xref="InterPro:IPR000374"
/db_xref="GeneID:4569340"
/translation="MHGIAVPITEIMGTLLSINLLQRIVVAVLGIPLLLWINREGGIL
FFLLVLLLSLLATVEFYRLAEHKAHPSPLWLVLPWTVLIQVNFYIGIADTAELLLLMV
LFLFVLELFDKEGSPLLNLGSLLTGLLYVNLCFGSLLRLRLSLHDGRGEAFVLLLLVC
VWSADIFAYFGGSTLGGKLIHRKLFERLSPHKTWEGFLSGFFGSLAASMVFARFVPDV
SDSAALITGALIGLGSPAGDLIESMFKRDAGVKDSSGLIPGHGGVLDRFDTVMFVSPF
IYLIITYL"
misc_feature <405741..406190
/locus_tag="Cpha266_0362"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:110170"
gene 407105..407575
/locus_tag="Cpha266_0363"
/db_xref="GeneID:4569341"
CDS 407105..407575
/locus_tag="Cpha266_0363"
/note="TIGRFAM: PTS system, fructose subfamily, IIA
subunit;
PFAM: phosphoenolpyruvate-dependent sugar
phosphotransferase system, EIIA 2;
KEGG: cch:Cag_1468 putative PTS IIA-like
nitrogen-regulatory protein PtsN"
/codon_start=1
/transl_table=11
/product="putative PTS IIA-like nitrogen-regulatory
protein PtsN"
/protein_id="YP_910846.1"
/db_xref="GI:119356202"
/db_xref="InterPro:IPR002178"
/db_xref="InterPro:IPR004715"
/db_xref="GeneID:4569341"
/translation="MKIESLLSESFIALNLDLASKSQVIDAMLDLVATHPSVCDKEKL
RQDVLKREREMSTGIGKAIALPHAKTSAVKHPVLALATLHKEINFDSIDNEPVRIIFL
LATPEEMLAEHLKLLGRITRLAGRMDFREQLLLLKTPAAVLDLFREEEKDFPQI"
misc_feature 407123..407542
/locus_tag="Cpha266_0363"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(407255..407257,407303..407305)
/locus_tag="Cpha266_0363"
/note="active site"
/db_xref="CDD:29266"
misc_feature 407303..407305
/locus_tag="Cpha266_0363"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 407766..409055
/gene="hisS"
/locus_tag="Cpha266_0364"
/db_xref="GeneID:4569342"
CDS 407766..409055
/gene="hisS"
/locus_tag="Cpha266_0364"
/EC_number="6.1.1.21"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_910847.1"
/db_xref="GI:119356203"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR004516"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:4569342"
/translation="MSQYQVVKGARDIFPDEIVRWHYVEDVVHRLASLYGYSEIRTPV
FEYTELFQRSIGTTTDIVGKEMFSFLPDPQGRSITLRPEMTAGVMRAVLQKNLLSTAP
IHKLFYLSELFRKERPQAGRQRQFSQFGAELLGVSSPAAVAEVITFMMQVFETLGIRG
LKLRINTLGDSSDRARYREILRAYLAPFYDRLDLASRERFEKNPLRILDSKNPDMQEI
IEGAPTLHDSLSHEALEDFEKVRFYLDSRSIAYDIDYRLVRGLDYYCHTAFEVTSPEL
GAQDAIGGGGRYDGLAKELGSSGDVPASGFAAGMERVLITMEKQGLFAALRPSGPKVY
VVAQQHALLDHALQVAYRLRREGISTEVDLAGRSMKAQMRDANRMRACFALFIGEDEV
VSGSYALKNLVTADQTAQSIETIIEMLNQYSGAEQGS"
misc_feature 407766..409028
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:178812"
misc_feature 407814..408719
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(407829..407831,407865..407867,407880..407900,
407970..407975,408012..408014,408018..408020,
408033..408038,408045..408050,408135..408140,
408159..408161,408183..408185,408195..408197,
408204..408206,408621..408623,408678..408683)
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 407874..407900
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(408012..408014,408018..408020,408105..408107,
408111..408113,408132..408134,408141..408143,
408147..408149,408159..408161,408540..408542,
408546..408548,408552..408557,408606..408608,
408621..408623,408681..408683,408690..408692,
408699..408701)
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="active site"
/db_xref="CDD:73226"
misc_feature 408102..408116
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(408678..408692,408699..408701)
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="motif 3; other site"
/db_xref="CDD:73226"
misc_feature 408753..409022
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:29799"
misc_feature order(408777..408782,408885..408887,408903..408905,
408927..408929,408957..408959,408963..408965)
/gene="hisS"
/locus_tag="Cpha266_0364"
/note="anticodon binding site; other site"
/db_xref="CDD:29799"
gene 409052..409312
/locus_tag="Cpha266_0365"
/db_xref="GeneID:4569343"
CDS 409052..409312
/locus_tag="Cpha266_0365"
/note="PFAM: glutaredoxin 2;
KEGG: cte:CT0237 hypothetical protein"
/codon_start=1
/transl_table=11
/product="glutaredoxin"
/protein_id="YP_910848.1"
/db_xref="GI:119356204"
/db_xref="InterPro:IPR008554"
/db_xref="GeneID:4569343"
/translation="MTESLHTVTIYGAKGCCLCDDALERVLDVQGSVPFLLEKTDISG
SPELQQQYGEAIPVVCIDGVEVFRYRVNKTRLLQILRGQGGV"
misc_feature 409070..409291
/locus_tag="Cpha266_0365"
/note="Glutaredoxin-like domain (DUF836); Region: DUF836;
pfam05768"
/db_xref="CDD:114491"
gene 409463..409666
/locus_tag="Cpha266_0366"
/db_xref="GeneID:4569344"
CDS 409463..409666
/locus_tag="Cpha266_0366"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910849.1"
/db_xref="GI:119356205"
/db_xref="GeneID:4569344"
/translation="MLKFILFVIVVFLVLRMVMRFFTMAVFRKERDANAVRSHMSQNI
EEADYEVLDSRLAEKEEDGQKGV"
gene 409789..410310
/locus_tag="Cpha266_0367"
/db_xref="GeneID:4569345"
CDS 409789..410310
/locus_tag="Cpha266_0367"
/note="PFAM: protein of unknown function DUF150;
KEGG: plt:Plut_1781 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910850.1"
/db_xref="GI:119356206"
/db_xref="InterPro:IPR003728"
/db_xref="GeneID:4569345"
/translation="MEEKIRRCVLQVLEATAGTKGEGVYLVSLSIKGSGKGTSIEVLV
DTDTGIRIDQCAFLSRRIRECLEVEEESDGMSGDDFNLDVASPGLGKAIILQRQYARH
VGRLFRVTFREEDGSMTEISGHLREILFPEEENASLVIEPLGKKKAGKKVSSENRTLR
LDRVIRAVPEAEL"
misc_feature 409789..410307
/locus_tag="Cpha266_0367"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature 409789..410307
/locus_tag="Cpha266_0367"
/note="hypothetical protein; Provisional; Region:
PRK14641"
/db_xref="CDD:173104"
gene 410366..411922
/gene="nusA"
/locus_tag="Cpha266_0368"
/db_xref="GeneID:4569346"
CDS 410366..411922
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_910851.1"
/db_xref="GI:119356207"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR010213"
/db_xref="InterPro:IPR013735"
/db_xref="GeneID:4569346"
/translation="MVRKQVKTEGQDRKAQIASAFGEIEQSKIFLDKRTESAAVKMDI
ADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKVVSEVDLESIEISIDEVR
KIDDSLELGDYYEEGPIKLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEV
VAGEVYQVRSNEVIFTYNTSKDHRVELVLPRAEMIKKDNPRRNPRMKLYVKRIEREKV
KVRLDDGGVVERDKPDGGMKVIVSRIDDRFLYKLFEHEVPEILDGLIVIKGIARVPGE
RAKVAVESTSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQP
AKIDPLTVHADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKS
MEDPTDIDIIEFREEFGDDMIYQLLDGGLDTAKKVLKAGVERIEEVLLGPSAPEEITF
FSKGRTRSPIKPRERKVTEEEKRYWKKIAENIFKTVKEQFTDADLHDLFDDGDEDSDD
QQAAESPADE"
misc_feature 410501..410803
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature 410507..411526
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="transcription termination factor NusA; Region:
NusA; TIGR01953"
/db_xref="CDD:162623"
misc_feature 410828..411013
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(410861..410863,410885..410887,410927..410929,
410933..410935)
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 411185..411376
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 411335..411520
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature 411458..411469
/gene="nusA"
/locus_tag="Cpha266_0368"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
gene 411989..414964
/gene="infB"
/locus_tag="Cpha266_0369"
/db_xref="GeneID:4569347"
CDS 411989..414964
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_910852.1"
/db_xref="GI:119356208"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="InterPro:IPR013684"
/db_xref="GeneID:4569347"
/translation="MALEDMEKRYRISDLSRELQVSPQEVLQFIRMNGGKVGSTSSMV
NEEMRGMIFGNFSVEKKMVDEAMKIRAEKQRRLTRLEEQSRKTYEKEQQLRDSMHVAP
LVPVAPLHVAQDVIVEVAAPPSAQADHTVQAEPAVQTESAVQTESAVQTESAVQTEPA
VQTEPAVQTEPEVQTEPAAQTEPEVQTEPAAQTEPAAQTEPAAQTESAVQTEADLSDV
GEVSIVPENVEVIDVPELPMVPVMPVKEEPSVNDQLVSFDIPQNIGGLTVVGTLDMMN
PFDRSESGKMKARKKNFKEQADALKSEFDTPAGEEKLVDDKLVVKKKPVKAAGDGDTA
PAADDALAGKKKPGKKKKKPDVDEKVISANIRTTISGMDDSAGSVSRQKFRKMRRMER
EKEHEAAEAFRESQRAIVRVTEYASPHELAELMGVTAKEIIQKCFALGKFVTINQRLD
KESLELIALEFGFEAEFISEIEATAVVAEVDDAEDLLIRPPVVTIMGHVDHGKTSLLD
YIRNSNVVAGESGGITQHIGAYEVTVEGNRKITFLDTPGHEAFTAMRARGAQVTDIVI
LVVAADDSVMPQTIEAINHAKAAGVPIVVAINKIDKPAANPEKIKTQLSEAGVLVEDW
GGEYQCQEISAKQGIGIEELMGKLLTEAEIRELKGNFSEDVLASGIIIESELDKGKGV
ISTVLVQRGYLRVGDPFVAGNTMGRVRALMDERSKRIHEAGPSQPVRVLGFEALPQSG
DVLTVMASDRDARELAQKRQVIRREHEFRRSTRVKLDSIARQIREGLMKELSVIIKAD
TDGSIQALADGLMKIHNEEVKVQIIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNA
KKLAEKEDLDVRFYSVIYHVLEDVEKALEGMLSPELHEESLGSLEIRQVFRVPKVGNV
GGCYALEGKVFRDSKVRLLRDGVQVYDGQLDTLRRFKDDVKEVDAGYECGLSLKNYDD
IKVGDIVEAYKIVEKKRKL"
misc_feature 413243..413380
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 413246..414961
/gene="infB"
/locus_tag="Cpha266_0369"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature 413459..413950
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 413477..413500
/gene="infB"
/locus_tag="Cpha266_0369"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(413480..413482,413486..413488,413498..413503,
413510..413512,413519..413524,413570..413575,
413630..413635,413702..413707,413810..413812,
413822..413824)
/gene="infB"
/locus_tag="Cpha266_0369"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(413483..413503,413633..413635,413780..413785,
413789..413794,413888..413896)
/gene="infB"
/locus_tag="Cpha266_0369"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 413552..413572
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 413558..413560
/gene="infB"
/locus_tag="Cpha266_0369"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 413618..413629
/gene="infB"
/locus_tag="Cpha266_0369"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 413624..413680
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 413780..413791
/gene="infB"
/locus_tag="Cpha266_0369"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 413888..413896
/gene="infB"
/locus_tag="Cpha266_0369"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 413987..414268
/gene="infB"
/locus_tag="Cpha266_0369"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 414308..414634
/gene="infB"
/locus_tag="Cpha266_0369"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 414680..414931
/gene="infB"
/locus_tag="Cpha266_0369"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 414983..415333
/locus_tag="Cpha266_0370"
/db_xref="GeneID:4569348"
CDS 414983..415333
/locus_tag="Cpha266_0370"
/note="PFAM: ribosome-binding factor A;
KEGG: plt:Plut_1778 ribosome-binding factor A"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_910853.1"
/db_xref="GI:119356209"
/db_xref="InterPro:IPR000238"
/db_xref="GeneID:4569348"
/translation="MSIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGI
AKVYVSVIGSAKEQADTIEYLQQEKKNIRKILSSKIRHHFRRIPELEFYQDRLYEKAD
RIEQLLKEVRKEQE"
misc_feature 414992..415306
/locus_tag="Cpha266_0370"
/note="Ribosome-binding factor A; Region: RBFA; pfam02033"
/db_xref="CDD:202097"
gene 415342..416100
/locus_tag="Cpha266_0371"
/db_xref="GeneID:4569349"
CDS 415342..416100
/locus_tag="Cpha266_0371"
/EC_number="4.2.1.70"
/note="KEGG: cch:Cag_1460 tRNA pseudouridine synthase B;
TIGRFAM: tRNA pseudouridine synthase B;
PFAM: pseudouridylate synthase TruB domain protein"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_910854.1"
/db_xref="GI:119356210"
/db_xref="InterPro:IPR002501"
/db_xref="InterPro:IPR004510"
/db_xref="GeneID:4569349"
/translation="MDQEGLKSVAGTLHTPEVHEDSGCFHLVDKPVDWTSFDVVAKIR
NTYKLIGQKRKVGHCGTLDPKASGLLILATGRKTKEIASLELLDKVYEGSFKLGVVTD
SHDRETPEYNQCATGHLEREQIIEAAASFVGTRQQQPPMYSAAWHNGKRLYELARKGD
VVHDRKAKEIIIRRFEITAVELPLVRFILEVSKGAYIRVIAHELGALLGVGAYLASLK
RVAIGPYELGSACSVPETIEAILKKRESVLFIEK"
misc_feature 415420..416061
/locus_tag="Cpha266_0371"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:211430"
misc_feature order(415519..415530,415933..415935)
/locus_tag="Cpha266_0371"
/note="active site"
/db_xref="CDD:211324"
gene 416110..417075
/locus_tag="Cpha266_0372"
/db_xref="GeneID:4569350"
CDS 416110..417075
/locus_tag="Cpha266_0372"
/EC_number="2.7.1.26"
/EC_number="2.7.7.2"
/note="TIGRFAM: riboflavin biosynthesis protein RibF;
PFAM: Riboflavin kinase / FAD synthetase;
KEGG: plt:Plut_1776 riboflavin kinase / FAD synthetase"
/codon_start=1
/transl_table=11
/product="riboflavin kinase/FMN adenylyltransferase"
/protein_id="YP_910855.1"
/db_xref="GI:119356211"
/db_xref="InterPro:IPR002606"
/db_xref="GeneID:4569350"
/translation="MLVVEYQNNDVVAYPSGEPVIFSPVPSAVTIGSFDGVHRGHRSI
IARMNAIARSRQLRSVVVTFEPHPRRVLSASASPSPLVLSTLDEKVALLTSLDVDLLF
VIRFTDAFAARSSEDFIVGVLVKLLCAKSIIVGYDHGFGRNRTGSSETLLHLGKEFGF
DVEAITEVKIGNEHFSSTRIRKLLESGNLSDANQFLGYSYIVSGTVVGGDQRGRTIGF
PTVNIKPSDPQKLLPHSGVYLAMIELDGISYKAMMNIGVRPTVSQGNEKTVEAHIPGF
SGELYGAFLSFRLLVYIREEKKFATIDELKEQLEKDKKTVELYNE"
misc_feature 416170..417015
/locus_tag="Cpha266_0372"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:180171"
misc_feature 416188..416736
/locus_tag="Cpha266_0372"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature order(416203..416214,416221..416223,416230..416232,
416518..416520,416608..416610,416632..416640)
/locus_tag="Cpha266_0372"
/note="active site"
/db_xref="CDD:185679"
misc_feature 416692..417015
/locus_tag="Cpha266_0372"
/note="Riboflavin kinase; Region: Flavokinase; pfam01687"
/db_xref="CDD:190069"
gene 417123..417392
/gene="rpsO"
/locus_tag="Cpha266_0373"
/db_xref="GeneID:4569351"
CDS 417123..417392
/gene="rpsO"
/locus_tag="Cpha266_0373"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_910856.1"
/db_xref="GI:119356212"
/db_xref="InterPro:IPR000589"
/db_xref="InterPro:IPR005290"
/db_xref="GeneID:4569351"
/translation="MSLTQEDKAGIISQFGGVQQNTGKAEVQVALFSRRITDLTGHLQ
QHPKDKHSRRGLLMLVGKRKKVLNYLKNVDIERYRTVIAELDLRK"
misc_feature 417144..417380
/gene="rpsO"
/locus_tag="Cpha266_0373"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature order(417144..417146,417195..417197,417204..417206,
417225..417227,417237..417239,417246..417248,
417258..417260,417264..417269,417273..417278,
417315..417317,417327..417329)
/gene="rpsO"
/locus_tag="Cpha266_0373"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(417210..417212,417219..417224,417231..417233,
417240..417242,417360..417362,417372..417374)
/gene="rpsO"
/locus_tag="Cpha266_0373"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(417300..417302,417312..417314,417375..417380)
/gene="rpsO"
/locus_tag="Cpha266_0373"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene 417471..418373
/locus_tag="Cpha266_0374"
/db_xref="GeneID:4569352"
CDS 417471..418373
/locus_tag="Cpha266_0374"
/note="PFAM: YicC N-terminal domain protein; domain of
unknown function DUF1732;
KEGG: plt:Plut_1774 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910857.1"
/db_xref="GI:119356213"
/db_xref="InterPro:IPR005229"
/db_xref="InterPro:IPR013527"
/db_xref="InterPro:IPR013551"
/db_xref="GeneID:4569352"
/translation="MQRYIMLESMTGYGSAEAVDNGVRVFVELRSVNNRFAEVSVKLP
RQLLAFELEVRELVRSTFQRGKISASIQVQADQEVDFPLRVNPLKVKACRELLDDVRM
AAGIDAPVSLEHVLRFSEIFETGNTVLDNTEWLWSFVKKLLQDAMHKLKEMRRKEGEE
LSLDFTARIAQIERTLAEISSASQGNLQAARKKLASKAELIAGQDIAYSRDRLEMELV
LAADKLDITEEFTRFSSHNKFFLEELNNDESGTGRKLNFLLQEQLREANTIASKSQSA
EISQKIVHVKEELEKIREQLQNIE"
misc_feature 417486..418370
/locus_tag="Cpha266_0374"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:183325"
misc_feature 417489..417962
/locus_tag="Cpha266_0374"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:146410"
misc_feature 418110..418370
/locus_tag="Cpha266_0374"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene 418378..418962
/gene="gmk"
/locus_tag="Cpha266_0375"
/db_xref="GeneID:4569353"
CDS 418378..418962
/gene="gmk"
/locus_tag="Cpha266_0375"
/EC_number="2.7.4.8"
/note="Essential for recycling GMP and indirectly, cGMP"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_910858.1"
/db_xref="GI:119356214"
/db_xref="InterPro:IPR008144"
/db_xref="InterPro:IPR008145"
/db_xref="GeneID:4569353"
/translation="MTISRGPTGKLVVFSAPSGTGKSTIAKIVLERIPSLAFSVSATT
RPMRAGEEEGVHYYFLDKKKFEEKIRDGGFIEHEYFFNNYYGTLLDKTVDAVNSGHHL
LFDLDVKGALNLKTLFPLNSLLIFIRPPDMATLRERLLKRESEDADALNVRLERAELE
LGYVDQFDEVIVNDCLDRAADAVTAKVSEFLSNT"
misc_feature 418402..418932
/gene="gmk"
/locus_tag="Cpha266_0375"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:30543"
misc_feature 418408..418770
/gene="gmk"
/locus_tag="Cpha266_0375"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:73180"
misc_feature order(418423..418425,418441..418443,418489..418491,
418510..418512,418519..418521,418546..418548,
418615..418617,418630..418632)
/gene="gmk"
/locus_tag="Cpha266_0375"
/note="catalytic site [active]"
/db_xref="CDD:73180"
misc_feature order(418423..418425,418441..418443)
/gene="gmk"
/locus_tag="Cpha266_0375"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:73180"
gene 418974..419324
/locus_tag="Cpha266_0376"
/db_xref="GeneID:4569354"
CDS 418974..419324
/locus_tag="Cpha266_0376"
/note="KEGG: plt:Plut_1772 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910859.1"
/db_xref="GI:119356215"
/db_xref="GeneID:4569354"
/translation="MSVNPVDLNKLRSAHANLYETVVAISKRAKKIHEEERAELEEKL
LPYKEMIRNPGSESESDKVFPEQIAISLEFESREKASQKAVAGYLQHRYDYTLGKIAE
PKVTPIEDDETDGD"
gene 419302..419799
/locus_tag="Cpha266_0377"
/db_xref="GeneID:4568970"
CDS 419302..419799
/locus_tag="Cpha266_0377"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: cte:CT0249 glutathione S-transferase, fosfomycin
resistance protein, putative"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_910860.1"
/db_xref="GI:119356216"
/db_xref="InterPro:IPR004360"
/db_xref="InterPro:IPR004361"
/db_xref="InterPro:IPR011588"
/db_xref="GeneID:4568970"
/translation="MMKLTGINQITLRVNDLGRAEEFYADILGFRIDHRVGVNICYLR
LNSDMLVLVKSETPSVPESRDFRVDHFGFRLASDAEVDEAADYLDAKGVHLITRPAHR
QEGRAFFVMDPDGNLVEFYSMHNGGIDKECRGCDPISPDALAAGNRSKIREENDQKKP
RRSRK"
misc_feature 419317..419661
/locus_tag="Cpha266_0377"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature 419326..419661
/locus_tag="Cpha266_0377"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cd06587"
/db_xref="CDD:211348"
misc_feature order(419326..419328,419338..419340,419419..419421,
419452..419454,419458..419460,419509..419511,
419626..419628,419650..419652,419656..419658)
/locus_tag="Cpha266_0377"
/note="active site"
/db_xref="CDD:211348"
misc_feature order(419326..419328,419509..419511,419656..419658)
/locus_tag="Cpha266_0377"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211348"
gene complement(419788..420531)
/locus_tag="Cpha266_0378"
/db_xref="GeneID:4568971"
CDS complement(419788..420531)
/locus_tag="Cpha266_0378"
/EC_number="2.7.7.23"
/note="PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol
synthase; Nucleotidyl transferase;
KEGG: cte:CT0251 UDP-N-acetylglucosamine
pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine pyrophosphorylase"
/protein_id="YP_910861.1"
/db_xref="GI:119356217"
/db_xref="InterPro:IPR001228"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4568971"
/translation="MSLAVIIMAAGKGTRMQSELPKVLHKANGRPVIEYVLDTALHLK
PETIILIVGHQADKVIAATRQYPVICALQEPQNGTGHAVMQAEKALKTFSGDVLILSG
DVPLVKRSTLLQLIALHHNEQASATVLTARLDNPSGYGRIIRNKTGGEVMKIIEQRDA
SPEELSVDEINSGIYVFKAPVLFQALREITTENAQQEYYLTDVFDICFRNGNKVCACR
TENADEIRGINTPEQLRETEQLLCALSLS"
misc_feature complement(419830..420519)
/locus_tag="Cpha266_0378"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature complement(order(420223..420225,420229..420231,
420286..420288,420295..420297,420379..420381,
420502..420510))
/locus_tag="Cpha266_0378"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature complement(order(419845..419847,420223..420225))
/locus_tag="Cpha266_0378"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
gene complement(420548..420943)
/locus_tag="Cpha266_0379"
/db_xref="GeneID:4568972"
CDS complement(420548..420943)
/locus_tag="Cpha266_0379"
/EC_number="4.1.1.11"
/note="Converts L-aspartate to beta-alanine and provides
the major route of beta-alanine production in bacteria.
Beta-alanine is essential for the biosynthesis of
pantothenate (vitamin B5)"
/codon_start=1
/transl_table=11
/product="aspartate alpha-decarboxylase"
/protein_id="YP_910862.1"
/db_xref="GI:119356218"
/db_xref="InterPro:IPR003190"
/db_xref="GeneID:4568972"
/translation="MKLHLLKSKIHNARVTSGDLEYEGSITIDQELLLLAEMIPNEKV
LVVNNNNGERFETYIINGEPGSRVIQLNGAAARCALPGDEIIIMTFAVMDEKKARTFQ
PMVLIVDHLNNPKRRHRIGQEDEQLSSSI"
misc_feature complement(420608..420940)
/locus_tag="Cpha266_0379"
/note="Aspartate alpha-decarboxylase or L-aspartate
1-decarboxylase, a pyruvoyl group-dependent decarboxylase
in beta-alanine production; Region: Asp_decarbox; cd06919"
/db_xref="CDD:132994"
misc_feature complement(order(420641..420643,420668..420676,
420686..420688,420710..420715,420719..420724,
420770..420784,420788..420790,420797..420799,
420803..420805,420815..420820,420827..420829,
420833..420835,420875..420886,420908..420913,
420917..420919,420923..420940))
/locus_tag="Cpha266_0379"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:132994"
misc_feature complement(order(420770..420772,420869..420874,
420911..420913,420917..420919))
/locus_tag="Cpha266_0379"
/note="active site"
/db_xref="CDD:132994"
gene complement(420965..421459)
/locus_tag="Cpha266_0380"
/db_xref="GeneID:4568973"
CDS complement(420965..421459)
/locus_tag="Cpha266_0380"
/note="KEGG: plt:Plut_1768 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910863.1"
/db_xref="GI:119356219"
/db_xref="GeneID:4568973"
/translation="MSGCGAPQSERRKPETGFIGEGHPQQESWDIHLNLTDAGIPKAS
IKAGYAAEFNKNSKKEYHLQKGVTVTFFNSEKEPSTILKAQEAVVHDNLDIEARGNIV
ITTDNTTTIKTESIKRTAKDKMIRSNDYVTITRPGETLTGYGFESDQALKKYRIFRAS
GESH"
misc_feature complement(420989..421372)
/locus_tag="Cpha266_0380"
/note="Lipopolysaccharide-assembly, LptC-related; Region:
LptC; pfam06835"
/db_xref="CDD:203530"
gene complement(421522..422085)
/locus_tag="Cpha266_0381"
/db_xref="GeneID:4568974"
CDS complement(421522..422085)
/locus_tag="Cpha266_0381"
/note="PFAM: outer membrane chaperone Skp (OmpH);
KEGG: plt:Plut_1767 outer membrane protein OmpH"
/codon_start=1
/transl_table=11
/product="outer membrane chaperone Skp (OmpH)"
/protein_id="YP_910864.1"
/db_xref="GI:119356220"
/db_xref="InterPro:IPR005632"
/db_xref="GeneID:4568974"
/translation="MTTLIMKPMYNRKGFMSVVRKIVMASLLGLMLGAPATVHAETVG
VVDFGKILLQMPERKQAETTLQAMATPFQNELERMSQDLQKGLVAYEQQKASMAKPAR
EVKEKELNTKAQAIQKYKLEKFGQEGLVAKKEQELLIPIRQKIVASVQTIAQKEGFTL
VLDKGAMIYGTPASDLTFKVMNQLNLK"
sig_peptide complement(421963..422085)
/locus_tag="Cpha266_0381"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.999 at
residue 41"
misc_feature complement(421534..422031)
/locus_tag="Cpha266_0381"
/note="periplasmic chaperone; Provisional; Region:
PRK10780"
/db_xref="CDD:182724"
misc_feature complement(421531..421959)
/locus_tag="Cpha266_0381"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:198003"
gene 422399..423127
/locus_tag="Cpha266_0382"
/db_xref="GeneID:4568975"
CDS 422399..423127
/locus_tag="Cpha266_0382"
/note="TIGRFAM: methyltransferase FkbM family;
KEGG: ava:Ava_1042 methyltransferase FkbM"
/codon_start=1
/transl_table=11
/product="FkbM family methyltransferase"
/protein_id="YP_910865.1"
/db_xref="GI:119356221"
/db_xref="InterPro:IPR006342"
/db_xref="GeneID:4568975"
/translation="MGFFIRAKLYFRQLIGQEPRTNVEIACECRHIHEWCICPVGIDS
ASSVFSLGVGNDIGFDTGLIKDFNCSVYAFDPTPRWVEWIGSMSLPEKFKFYPYAIGG
TDGTMKLFPRIHKGRRSSKMLTLLNEGLHDDESIAVTMKRLSTLTAELSVPSIAILKI
DIEAAEYEVIDDFLADHVPVYQLLVEFHHRFASVPVKKTTDALAKLYKAGYRIFYVSE
KAREYSFIHEATYDGYRRQAGKSS"
misc_feature 422555..422962
/locus_tag="Cpha266_0382"
/note="methyltransferase, FkbM family; Region: fkbM_fam;
TIGR01444"
/db_xref="CDD:211654"
gene complement(423140..424285)
/locus_tag="Cpha266_0383"
/db_xref="GeneID:4568976"
CDS complement(423140..424285)
/locus_tag="Cpha266_0383"
/note="TIGRFAM: DNA protecting protein DprA;
PFAM: SMF family protein;
KEGG: cch:Cag_1447 smf protein"
/codon_start=1
/transl_table=11
/product="DNA protecting protein DprA"
/protein_id="YP_910866.1"
/db_xref="GI:119356222"
/db_xref="InterPro:IPR003488"
/db_xref="GeneID:4568976"
/translation="MSATPGCDSRILLLTLSQIPGIGPARINAIVSNLGSDISVLDAT
EGTFQHIPGIGVPLAKEIVSFLGNRQKRLAALEAADEQMLRLERYNAKLLTITDTEYP
RLLREITDPPPYLFVRGNLPGNHEPGIAIVGTRRASAYGKQAAAKFSGELALQGFPIV
SGLAYGIDMVAHTASIGSGGKTIAVVATGVDTIYTDPRGKVWPGIVENGAIISEEWIG
SNLVPAKFPKRNRIISGITLGTLVVESDRNGGSLITASFALEQNREVFAVPGSIFSHT
SRGTNMLIQLGQAKAALCVDDIISEVAPQSSRENIPRQNPIALDMHLSAEELNVLAIM
GKESVHIDTIASKTGLDVSTLLVRLFELEMKRAVIQHPGQFFQNRHS"
misc_feature complement(423149..424264)
/locus_tag="Cpha266_0383"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:31101"
misc_feature complement(423380..424030)
/locus_tag="Cpha266_0383"
/note="Possible lysine decarboxylase; Region:
Lysine_decarbox; cl00695"
/db_xref="CDD:207171"
gene complement(424300..425298)
/locus_tag="Cpha266_0384"
/db_xref="GeneID:4568977"
CDS complement(424300..425298)
/locus_tag="Cpha266_0384"
/note="PFAM: Polyprenyl synthetase;
KEGG: plt:Plut_1765 geranyltranstransferase"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_910867.1"
/db_xref="GI:119356223"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:4568977"
/translation="MNMSITQELVEKKYRLYHNLINEALASCFSAEAPVTLYAPAKYI
LDGKGKRIRPFLTLLASEAVCGSSEHALKVALAVEILHNFTLMHDDIMDQAELRHGRP
TVHKQWNANVAILSGDMMIAYAYELALQSPSSRQIELVHILNDANITICEGQALDIEL
EEKKHATIADYLDMIAKKSGRLISAALEAGGVAGNATDEQLNNLVTFGEKIGRAFQIQ
DDFLDIMADDGKSGKIAGGDVINGKKTYLLLRSIELTSGDDHRLLQSIIENNGISAER
VPEIRSIYQRCGVLDETRLLIRRDTENALSAVDKLPHAEGREYLKGFANILVKRDF"
misc_feature complement(424303..425250)
/locus_tag="Cpha266_0384"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(424309..425205)
/locus_tag="Cpha266_0384"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(424570..424572,424585..424587,
424600..424602,424630..424632,424639..424644,
424753..424755,424762..424767,424828..424830,
424837..424839,425002..425007,425020..425025,
425029..425037,425041..425049,425056..425058))
/locus_tag="Cpha266_0384"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(425020..425049)
/locus_tag="Cpha266_0384"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(424570..424572,424585..424587,
424600..424602,424630..424632,424639..424644,
424765..424767,424828..424830,425002..425007,
425020..425022,425029..425034))
/locus_tag="Cpha266_0384"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(424639..424644,424765..424767,
425002..425007,425020..425022,425029..425034))
/locus_tag="Cpha266_0384"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(424765..424767,424828..424830,
425002..425007,425020..425022,425029..425034))
/locus_tag="Cpha266_0384"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(424564..424578,424585..424602,
424618..424623,424972..425016))
/locus_tag="Cpha266_0384"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(424570..424572,424585..424587,
424600..424602,424630..424632,424639..424644))
/locus_tag="Cpha266_0384"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(425301..426392)
/locus_tag="Cpha266_0385"
/db_xref="GeneID:4568978"
CDS complement(425301..426392)
/locus_tag="Cpha266_0385"
/EC_number="5.3.3.2"
/note="catalyzes the isomerization of isopentenyl
pyrophosphate to dimethylallyl diphosphate"
/codon_start=1
/transl_table=11
/product="isopentenyl pyrophosphate isomerase"
/protein_id="YP_910868.1"
/db_xref="GI:119356224"
/db_xref="InterPro:IPR000262"
/db_xref="InterPro:IPR011179"
/db_xref="GeneID:4568978"
/translation="MNEKLSTPSNITIERKLNHVEICLHGNVSFEGTTTGLERYAIEH
QAVPEINYADINLSATLLGRTIGAPLMISSMTGGYHEAATLNRQFAQAAEHFRIPLGV
GSMRQALENNEHRESFAVVRKAAPSVPVFANIGAPEVAAGLESSQIETMLDLIQADGL
IVHLNAAQELFQPEGNTNFHGFLDQLASLTAKTPVPVIAKEVGSGISAEAARLLIDAG
VKVIDVAGAGGTSWQKVEEVRYIKRFGNENRFSPEALNELLNWGIPTATCLEEIGRLK
KNHPQYQPIEIIASGGIQSGIDVAKTILLGASVAASAGRLLKALHEGKLLQTIEMWLN
DLKAVMFLTGSLSLEQLQKKRMTLKHLPT"
misc_feature complement(425316..426374)
/locus_tag="Cpha266_0385"
/note="isopentenyl pyrophosphate isomerase; Provisional;
Region: PRK05437"
/db_xref="CDD:180081"
misc_feature complement(425334..426350)
/locus_tag="Cpha266_0385"
/note="Isopentenyl-diphosphate:dimethylallyl diphosphate
isomerase type 2 (IDI-2) FMN-binding domain. Two types of
IDIs have been characterized at present. The long known
IDI-1 is only dependent on divalent metals for activity,
whereas IDI-2 requires a metal; Region: IDI-2_FMN;
cd02811"
/db_xref="CDD:73373"
misc_feature complement(order(425391..425393,425400..425402,
425499..425504,425580..425582,425604..425606,
425766..425768,425778..425783,425790..425792,
425901..425903,426246..426248,426255..426266))
/locus_tag="Cpha266_0385"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73373"
misc_feature complement(order(425451..425453,425517..425525,
425793..425795,425904..425906,425994..425996,
426081..426083,426159..426170))
/locus_tag="Cpha266_0385"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73373"
misc_feature complement(order(426138..426143,426162..426164))
/locus_tag="Cpha266_0385"
/note="homodimer contacts [polypeptide binding]; other
site"
/db_xref="CDD:73373"
misc_feature complement(order(425451..425456,425523..425525,
425793..425795,425904..425906,425994..425996,
426081..426083))
/locus_tag="Cpha266_0385"
/note="putative active site [active]"
/db_xref="CDD:73373"
misc_feature complement(order(425904..425906,425988..425990,
425994..425996))
/locus_tag="Cpha266_0385"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:73373"
gene 426500..427768
/locus_tag="Cpha266_0386"
/db_xref="GeneID:4568979"
CDS 426500..427768
/locus_tag="Cpha266_0386"
/note="PFAM: protein of unknown function DUF214;
KEGG: plt:Plut_1763 putative ABC transporter, integral
membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910869.1"
/db_xref="GI:119356225"
/db_xref="InterPro:IPR003838"
/db_xref="GeneID:4568979"
/translation="MLKTLFDIALRHLLGRRRQTLTTIFGVAVSTMVLITTISLTRGL
LDSFIDTIVNVAPHITIKGEKLNPVPVNIINRAGETRVSMVEDNIRKQEKEEVRNYRQ
ILGMFSSSLYEKEVTASSPYVESQVMAVKGNRNQPILLKGVIIDRENEISGIAGKIQQ
GDLSVFRNSSNALLVGRTVARDMHLELNDEVVIIPASGKSRQCKVAGIFFSGVNAVDN
SVFVSLKLGQIIEGLPANKVSGIALKVRDPLNNTPLAREMERITGYKCPTWQEENASI
LSLFARIGYIVFSLVAFVGVVSGFGVANILVTTVFEKSRDIAIMKSFGFSALHLVAMF
VLEGFLVGLAGALLGGVLAIGSINLFASIPVENSQGPLTKTGFSMSLNPIYFFYVIGV
TVFISTISAILPSARAAKLEPVKVLRDSSL"
misc_feature 426515..427756
/locus_tag="Cpha266_0386"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:34229"
misc_feature 426524..427282
/locus_tag="Cpha266_0386"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:205030"
misc_feature 427409..427738
/locus_tag="Cpha266_0386"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene complement(427866..429725)
/locus_tag="Cpha266_0387"
/db_xref="GeneID:4568980"
CDS complement(427866..429725)
/locus_tag="Cpha266_0387"
/note="PFAM: ABC transporter, transmembrane region; ABC
transporter related;
SMART: AAA ATPase;
KEGG: cch:Cag_0453 ATPase"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_910870.1"
/db_xref="GI:119356226"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:4568980"
/translation="MNRQKEQTTDTSAQEQTSKRSVSAKSFRTQKDETLEKGKKGSAD
WYIASRLIAYIKPYKALVAASAGITLAGSILGPLRPYLTKIAIDDYIAHGDMKGLATI
SLLLAAVVLLDGIKQFIATWLTQIIGQKAVFSIRMDVFRHLQQLPARFFDRNPIGRLL
TRTTNDIESLNEMLSSGIITILGDIMQLLFIVGLMLWIDWQLALVVLAILPLMLYATM
MFKKRVRIAFQDVRTHLARLNTFLQEHIAGMTIVQLFNHQKSEYTKHSDINADHRDAN
IRTVFYFSVYYPFIEVLSSLTAGMVIWYSAVRVLNADLTLGVVVSFVQYIWLFFRPLQ
HLSDRFNVIQTAIASSDRVFRLLEEKGGEGDAGAEPEPFVFRSRITFSNVWFAYDTDN
WILKDLSMEVRRGEKIAIVGATGSGKTTIINILSRLYPYAKGSIRIDNVELPDIASRS
LRKMIGVVMQDVFLFSGTIRENLAFGNPDLPDEAIFEAARIVGADRFIDQLPGGYAYR
VQENGAGLSAGQKQLIAFVRALLYDPQILVLDEATSSVDTETEMLIDAATAKLMQNRT
SIIIAHRLSTVQKADRIIVLHKGVIKESGSHQELLKEKGLYYKLYLLQHPEGR"
misc_feature complement(427932..429593)
/locus_tag="Cpha266_0387"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(428727..429542)
/locus_tag="Cpha266_0387"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature complement(427932..428597)
/locus_tag="Cpha266_0387"
/note="Glucan exporter ATP-binding protein. In A.
tumefaciens cyclic beta-1, 2-glucan must be transported
into the periplasmic space to exert its action as a
virluence factor. This subfamily belongs to the MRP-like
family and is involved in drug, peptide, and...; Region:
ABCC_Glucan_exporter_like; cd03254"
/db_xref="CDD:73013"
misc_feature complement(428469..428492)
/locus_tag="Cpha266_0387"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73013"
misc_feature complement(order(428010..428012,428103..428108,
428346..428348,428466..428474,428478..428483))
/locus_tag="Cpha266_0387"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73013"
misc_feature complement(428346..428357)
/locus_tag="Cpha266_0387"
/note="Q-loop/lid; other site"
/db_xref="CDD:73013"
misc_feature complement(428151..428180)
/locus_tag="Cpha266_0387"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73013"
misc_feature complement(428103..428120)
/locus_tag="Cpha266_0387"
/note="Walker B; other site"
/db_xref="CDD:73013"
misc_feature complement(428085..428096)
/locus_tag="Cpha266_0387"
/note="D-loop; other site"
/db_xref="CDD:73013"
misc_feature complement(428004..428024)
/locus_tag="Cpha266_0387"
/note="H-loop/switch region; other site"
/db_xref="CDD:73013"
gene complement(429732..431144)
/locus_tag="Cpha266_0388"
/db_xref="GeneID:4568981"
CDS complement(429732..431144)
/locus_tag="Cpha266_0388"
/note="PFAM: phosphoglucomutase/phosphomannomutase C
terminal; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain I;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain II; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain III;
KEGG: plt:Plut_1760 phosphoglucomutase/phosphomannomutase
family protein"
/codon_start=1
/transl_table=11
/product="phosphoglucomutase/phosphomannomutase
alpha/beta/subunit"
/protein_id="YP_910871.1"
/db_xref="GI:119356227"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="GeneID:4568981"
/translation="MSLMISVSGIRGIVGESLTPQNLTAFAMAFASWIRNKRDPSTLI
SSPKRPLIVIGRDTRPTGSCISNLVSNALALSGCDVIDIGIATTPTVELATVTEKADG
GLIVTASHNPVEWNALKMLNDRGEFLSAPDVEELLAIVEKAHVHAARWDDIGTVTSTS
RHDDLHIDKIMNLSFINTEAVRKQHFRVMIDCVEGAGFSIVPRLCRMLGMDELTLVAC
EGSGLFPRNPEPVEENLADTISAMKQARCDFGLIVDPDVDRLALICEDGSLFGEEYTL
VACADFYLNINNGPVTNNLSSSRALADIARQHGVACFSAKVGEANVIELMKEVGAVIG
GEGNGGVILPDLHYGRDALVGIALFVQAFTSWRMKNRGGTISSFRREFPEYVMSKQKI
KLGSMSPRILENLFNEIARRYPLAKTNMTDGLKLDFDDCWVHLRPSNTEPIIRIYAEA
HTKKRAEEIALELMNELQKD"
misc_feature complement(429744..431141)
/locus_tag="Cpha266_0388"
/note="phosphoglucosamine mutase; Region: Arch_GlmM;
TIGR03990"
/db_xref="CDD:211895"
misc_feature complement(429765..431135)
/locus_tag="Cpha266_0388"
/note="The alpha-D-phosphohexomutase superfamily includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this family include the
phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine...; Region: phosphohexomutase; cl03757"
/db_xref="CDD:208029"
misc_feature complement(order(429810..429812,429825..429833,
429837..429839,430125..430127,430131..430133,
430137..430139,430188..430196,430257..430259,
430368..430373,430377..430379,430383..430385,
430788..430790,430812..430820,431112..431114,
431121..431123,431127..431129))
/locus_tag="Cpha266_0388"
/note="active site"
/db_xref="CDD:100086"
misc_feature complement(order(429810..429812,429825..429833,
429837..429839,430125..430127,430131..430133,
430137..430139,430188..430190,430194..430196,
430257..430259,430368..430370,430818..430820,
431121..431123))
/locus_tag="Cpha266_0388"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100086"
misc_feature complement(order(430371..430373,430377..430379,
430383..430385,430818..430820))
/locus_tag="Cpha266_0388"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100086"
gene 431461..431736
/gene="rpsT"
/locus_tag="Cpha266_0389"
/db_xref="GeneID:4568982"
CDS 431461..431736
/gene="rpsT"
/locus_tag="Cpha266_0389"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_910872.1"
/db_xref="GI:119356228"
/db_xref="InterPro:IPR002583"
/db_xref="GeneID:4568982"
/translation="MPLHKSAEKRLRQSEKRNVRNRARKKELKVLLKNMQKLIDTSAD
KNVVEEAYRSAVQKLDRLGVKRYLHPNKASRKKAQLTKMLNNYVKVD"
misc_feature 431461..431727
/gene="rpsT"
/locus_tag="Cpha266_0389"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 431842..432444
/gene="ruvA"
/locus_tag="Cpha266_0390"
/db_xref="GeneID:4568983"
CDS 431842..432444
/gene="ruvA"
/locus_tag="Cpha266_0390"
/note="plays an essential role in ATP-dependent branch
migration of the Holliday junction"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase RuvA"
/protein_id="YP_910873.1"
/db_xref="GI:119356229"
/db_xref="InterPro:IPR000085"
/db_xref="InterPro:IPR003583"
/db_xref="InterPro:IPR011114"
/db_xref="InterPro:IPR013849"
/db_xref="InterPro:IPR013850"
/db_xref="GeneID:4568983"
/translation="MFAYFKGSLVTALPEEAVIDVSGVAYRMLISATTFRQLPDEGSQ
VLLYAHLSVREDALQLYGFFKEEERQLFRLLLLTSGVGPKLALAVLSGLQVPEVHEAI
MANEPERLYGVSGVGKKTAARIILELRDKILKLPLVTPAAGKAAMPSHHVKDDAVHAL
VTLGFSRLLAQKAVSALLEEKPEQSVEEVIKYALATIHNS"
misc_feature 431842..432432
/gene="ruvA"
/locus_tag="Cpha266_0390"
/note="Holliday junction DNA helicase RuvA; Reviewed;
Region: ruvA; PRK00116"
/db_xref="CDD:178876"
misc_feature 431842..432027
/gene="ruvA"
/locus_tag="Cpha266_0390"
/note="RuvA N terminal domain; Region: RuvA_N; pfam01330"
/db_xref="CDD:201732"
misc_feature 432295..432429
/gene="ruvA"
/locus_tag="Cpha266_0390"
/note="RuvA, C-terminal domain; Region: RuvA_C; pfam07499"
/db_xref="CDD:203653"
gene 432457..433743
/locus_tag="Cpha266_0391"
/db_xref="GeneID:4568984"
CDS 432457..433743
/locus_tag="Cpha266_0391"
/note="TIGRFAM: FolC bifunctional protein;
PFAM: Mur ligase, middle domain protein;
KEGG: cch:Cag_0458 folylpolyglutamate synthetase"
/codon_start=1
/transl_table=11
/product="bifunctional folylpolyglutamate synthase/
dihydrofolate synthase"
/protein_id="YP_910874.1"
/db_xref="GI:119356230"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:4568984"
/translation="MNYQEALDFLYPLHRFGIKPGLERVFGLLAVLGSPHRRLGTIVH
VSGTNGKGTTAAAIAAIFQAAGKKTALYTSPHLVDFTERMRINGGCIPHELVATYCSL
IKSRVEESHTTFFEATTAIAFAWFASEHVEVTIVETGMGGRLDATNVVHADYVAITSI
GQDHTAWLGSTPALIAAEKAAIIKKGSQVFSAVTDSEAAMPVRTAAECCEAPLSVLGI
DAHCHVDSEEIGRLELSVRTAKHQYERLTVPLTGAFHASNISLAVMVAETAGIDESSI
RNGLANLLQTGYRARLEKIAANPDVLLDVSHNANGIEETVNTLARFRNRYRNLFVLIG
LASDKNATAIVKHLKRLSCRLVAVSIPSERSIPALELGGIGEAEDIPTMVFSSPLDGL
GYLSGIAEAEDLVLVTGSFYLAGEVLSNGGWNKEMS"
misc_feature 432457..433713
/locus_tag="Cpha266_0391"
/note="Folylpolyglutamate synthase [Coenzyme metabolism];
Region: FolC; COG0285"
/db_xref="CDD:30633"
gene 433743..434036
/locus_tag="Cpha266_0392"
/db_xref="GeneID:4568985"
CDS 433743..434036
/locus_tag="Cpha266_0392"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910875.1"
/db_xref="GI:119356231"
/db_xref="GeneID:4568985"
/translation="MSALLSFFPEKNYIFIITTEVLHDLWVILPGRFFPCIGPDSITD
THPQLSSFSVFMIYTEYSAVATSGFPFALVMRASSFRDFLPSDFFDTNVIITF"
gene 434054..435343
/gene="rho"
/locus_tag="Cpha266_0393"
/db_xref="GeneID:4568986"
CDS 434054..435343
/gene="rho"
/locus_tag="Cpha266_0393"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_910876.1"
/db_xref="GI:119356232"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004665"
/db_xref="InterPro:IPR011112"
/db_xref="InterPro:IPR011113"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR013223"
/db_xref="GeneID:4568986"
/translation="MSNNSLAKGLDINVLQKKKVFELHALAKEIGVTAAGLRKEELIF
KIIEAQSRNNADSESGNVMINTGVLQVIPEGYGFLRSANYNYLSSPDDIYVSPSQIKR
FNMRTGDTVSGQVRAPKEGERFFALLKINTIDGNDPEITRERPYFENLTPLFPHDRIK
LEIKQSEYCGRIMDIFTPIGKGQRGLIVAQPKTGKTMLLQMIANAIIQNHPEIYLIVL
LIDERPEEVTDMARSVEAEVVSSTFDEDPERHVQVADMVLEKAKRLVEVGRDVVILLD
SITRLARAHNTIIPHSGKILSGGIDANALTKPKRFFGAARNIEEGGSLTIIATALVDT
GSRMDDVIFEEFKGTGNMELLLDRRLSERRIFPAIDILRSGTRKEELLFSREELSRTW
LLRKYLADKNPIECMEFMREKMADTKDNKEFFKYMNA"
misc_feature 434081..435337
/gene="rho"
/locus_tag="Cpha266_0393"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:181809"
misc_feature 434096..434215
/gene="rho"
/locus_tag="Cpha266_0393"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; smart00959"
/db_xref="CDD:198027"
misc_feature 434249..434449
/gene="rho"
/locus_tag="Cpha266_0393"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:88425"
misc_feature order(434261..434263,434267..434269,434279..434281,
434285..434287,434291..434293,434327..434329,
434333..434335,434408..434410,434417..434425)
/gene="rho"
/locus_tag="Cpha266_0393"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88425"
misc_feature 434552..435298
/gene="rho"
/locus_tag="Cpha266_0393"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:29994"
misc_feature order(434603..434605,434936..434938,434969..434971,
434978..434983,434990..434992,434999..435001,
435008..435010,435083..435088,435092..435106,
435110..435112,435182..435187,435227..435229,
435239..435241)
/gene="rho"
/locus_tag="Cpha266_0393"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29994"
misc_feature 434618..434641
/gene="rho"
/locus_tag="Cpha266_0393"
/note="Walker A motif; other site"
/db_xref="CDD:29994"
misc_feature order(434627..434629,434633..434644,435149..435151)
/gene="rho"
/locus_tag="Cpha266_0393"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29994"
misc_feature 434867..434881
/gene="rho"
/locus_tag="Cpha266_0393"
/note="Walker B motif; other site"
/db_xref="CDD:29994"
gene 436026..436098
/locus_tag="Cpha266_R0009"
/note="tRNA-Lys1"
/db_xref="GeneID:4568987"
tRNA 436026..436098
/locus_tag="Cpha266_R0009"
/product="tRNA-Lys"
/db_xref="GeneID:4568987"
gene 436115..436196
/locus_tag="Cpha266_R0010"
/note="tRNA-Leu1"
/db_xref="GeneID:4568648"
tRNA 436115..436196
/locus_tag="Cpha266_R0010"
/product="tRNA-Leu"
/db_xref="GeneID:4568648"
gene 436605..437195
/locus_tag="Cpha266_0394"
/db_xref="GeneID:4568649"
CDS 436605..437195
/locus_tag="Cpha266_0394"
/note="KEGG: cte:CT2144 outer surface protein, putative"
/codon_start=1
/transl_table=11
/product="outer surface protein, putative"
/protein_id="YP_910877.1"
/db_xref="GI:119356233"
/db_xref="GeneID:4568649"
/translation="MKKVLMSLFVAGMCAAPAYAAGPYVSASAGLGLLGNSDFKGVVE
VKDVIEYNSGLVLNGAIGYDADMFRGEFAVGYQSNGVDTLGGVSIDNLDVSILSFMAN
AYVDFEMKDSALTPYLMAGLGLASVDFSDDGGDDFEAESVFAWQIGAGIGVKAADNLT
VDLGYRYFVPSDVEIDDVDKITLASSNIMLGLRYGF"
sig_peptide 436605..436667
/locus_tag="Cpha266_0394"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.998 at
residue 21"
misc_feature <436791..437192
/locus_tag="Cpha266_0394"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 438083..438742
/locus_tag="Cpha266_0395"
/db_xref="GeneID:4568650"
CDS 438083..438742
/locus_tag="Cpha266_0395"
/note="PFAM: UvrB/UvrC protein; protein of unknown
function DUF151;
KEGG: plt:Plut_1753 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910878.1"
/db_xref="GI:119356234"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR003729"
/db_xref="GeneID:4568650"
/translation="MRGFVLFPLFKTTLFDFMGKLQVDILGLSASPHTNGAYALILYE
LEGKRKLPIIIGGFEAQAIALKLENIKPPRPFTHDLFKSVADAFSLHVKEIFIDELHN
ETFYAKIICELGGELHEIDARPSDAIAIAVRFNAPVFVTEEIMNEAGIREEQKESEEE
GEEDNTSSFIQEEPQPGGMPAQSAALLELQGRLDDAISRENYEEAARIRDEINRIKNQ
G"
misc_feature 438149..438532
/locus_tag="Cpha266_0395"
/note="Bifunctional nuclease; Region: DNase-RNase;
pfam02577"
/db_xref="CDD:190350"
misc_feature 438644..438736
/locus_tag="Cpha266_0395"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene complement(438858..439589)
/locus_tag="Cpha266_0396"
/db_xref="GeneID:4568651"
CDS complement(438858..439589)
/locus_tag="Cpha266_0396"
/note="KEGG: plt:Plut_1752 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910879.1"
/db_xref="GI:119356235"
/db_xref="InterPro:IPR008268"
/db_xref="GeneID:4568651"
/translation="MKKSLSLLAVLAVVGFASTPVQAADHYVSGMAGISWMQDSSIDL
PLNLNEVFGVGIDLGYSSGFTAVGAVGCDYGSTRLEAEVGYQTNDIDSITGSFDGDSA
SLALSGNAKVLSLMANGFYDFDLGGVELYAMAGIGVAQVSINDLTLADTNDLGISADD
IDDANEYLSRRLGAPVDLNALGLNVNETTLAYQVGAGLAVPIGDGIMLDARYRYFATT
DFTMPLDLNTNISSHSALLGLRVNL"
sig_peptide complement(439518..439589)
/locus_tag="Cpha266_0396"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 1.000 at
residue 24"
misc_feature complement(438906..439445)
/locus_tag="Cpha266_0396"
/note="Outer membrane protein beta-barrel domain; Region:
OMP_b-brl; pfam13505"
/db_xref="CDD:205683"
gene complement(439729..442221)
/locus_tag="Cpha266_0397"
/db_xref="GeneID:4568652"
CDS complement(439729..442221)
/locus_tag="Cpha266_0397"
/note="PFAM: surface antigen (D15); surface antigen
variable number repeat protein;
Polypeptide-transport-associated domain protein,
ShlB-type;
KEGG: cte:CT0266 bacterial surface antigen family protein"
/codon_start=1
/transl_table=11
/product="surface antigen (D15)"
/protein_id="YP_910880.1"
/db_xref="GI:119356236"
/db_xref="InterPro:IPR000184"
/db_xref="InterPro:IPR010827"
/db_xref="InterPro:IPR013686"
/db_xref="GeneID:4568652"
/translation="MKKMQKLITLVLVALAVNATGQTAEAKSKPVKQSVTATQAKTPA
EKKDLYTISAISFTGLQSLNEQELIASLPIKIGNNIAVPGAELSATMQYLWNLQVFKN
ITLEKSNPGTKNVALHFIVEEQPLLEEVVFKGNEKFDLDKLQKTADIQTGKKLSEQEL
LTAANKIEKLYADKGYLTAGAEYKLEAIGKNKVKAVFTITEGRKVVIEKIRFHGNNAF
SQGKLRGVFKETTQNSWWRKIFGAPKLDKDKFATDKDLLVDFYRENGYRDAKVVSDSI
SYTPDNKGLFLDITIEEGPKYHIGTITWTGNSKDFATTEILEKTFGIKTGDLYNAKLI
QERLNFSQDNSDVSSIYLDRGYLSYRANLDEVVVNPDTVNLLISIREGEQYQLNLVNI
TGNTKTKDHVIRRELYTIPGEMFSRKNVIRSIRELNMLNYFDAEKLAPEIQPNEENNT
VDLTYSVSEKQSDTFNASIGYGGSSGFTGTLGVTFNNFSLQDIFDADAYRPLPHGDGQ
KLSFQWQFGSDNYRTLALSFTEPWAFGGPTTVGFSAFKTHRTYDYTGTDSSIENKTID
QYGTILTIGRRLTWPDDYFAVGLKLKYLHNKGGFVSFINETGINVPDEADEYSITGTI
SRNSIDSPIYPRRGSKNTLTAQLAGGPLPGTIDFYKFTGNSTWFFPLSRKLVLNMSAQ
AGYLSTFNKSDYIPYTEYFYMGGSGMSSLPTVPMRGYDDRSFGALLETDSDLYGGTIY
TKFTTELRYPITLSPSVSVYGLAFFDAGNLWQDSESVDFSDLKKSVGVGLRVYLPIIG
MVGLDYGYGMDTVPGDMEKGWGFMFTFGTSTE"
sig_peptide complement(442156..442221)
/locus_tag="Cpha266_0397"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.722 at
residue 22"
misc_feature complement(439741..442074)
/locus_tag="Cpha266_0397"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:200260"
misc_feature complement(<441679..441837)
/locus_tag="Cpha266_0397"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; cl10520"
/db_xref="CDD:213120"
misc_feature complement(441340..441609)
/locus_tag="Cpha266_0397"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(441076..441333)
/locus_tag="Cpha266_0397"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(440842..441054)
/locus_tag="Cpha266_0397"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(439738..440709)
/locus_tag="Cpha266_0397"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene complement(442245..443093)
/locus_tag="Cpha266_0398"
/db_xref="GeneID:4568653"
CDS complement(442245..443093)
/locus_tag="Cpha266_0398"
/EC_number="2.5.1.31"
/note="KEGG: plt:Plut_1750
di-trans-poly-cis-decaprenylcistransferase;
TIGRFAM: undecaprenyl diphosphate synthase;
PFAM: Di-trans-poly-cis-decaprenylcistransferase"
/codon_start=1
/transl_table=11
/product="undecaprenyl pyrophosphate synthetase"
/protein_id="YP_910881.1"
/db_xref="GI:119356237"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:4568653"
/translation="MARIRTMDLSPTFRSPWFTTVSDTEDKKIQADLKASCELPLHIA
IIMDGNGRWAKLKGKTRIEGHIAGVDSVRDIVEASRQLGISYLTLFTFSTENWNRPEK
EISALMRLLIKVLRKEARALHDNNIRLNVIGNTALLPEKVRTVLDETVVLTGHNNGLV
MSIALSYSGKWDIVEACRSLAVEVKAGRVSPEMIDEHLFQSCLSTASIPDPELLIRTS
GEFRISNFMLWQSAYSEIYFTKTYWPDFRRAQFYAALRDYQNRERRFGQTSEQIQKKN
TANSKI"
misc_feature complement(442314..442976)
/locus_tag="Cpha266_0398"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cd00475"
/db_xref="CDD:29593"
misc_feature complement(442293..442958)
/locus_tag="Cpha266_0398"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature complement(442950..442952)
/locus_tag="Cpha266_0398"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature complement(442938..442949)
/locus_tag="Cpha266_0398"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature complement(order(442605..442607,442611..442613,
442656..442658,442677..442679,442758..442766,
442770..442775,442815..442829))
/locus_tag="Cpha266_0398"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature complement(order(442386..442388,442398..442400,
442407..442409,442419..442421,442428..442433,
442512..442514,442539..442541,442548..442550,
442560..442562,442584..442586))
/locus_tag="Cpha266_0398"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature complement(order(442428..442430,442446..442448))
/locus_tag="Cpha266_0398"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene 443441..444871
/gene="gatA"
/locus_tag="Cpha266_0399"
/db_xref="GeneID:4568654"
CDS 443441..444871
/gene="gatA"
/locus_tag="Cpha266_0399"
/EC_number="6.3.5.-"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_910882.1"
/db_xref="GI:119356238"
/db_xref="InterPro:IPR000120"
/db_xref="InterPro:IPR004412"
/db_xref="GeneID:4568654"
/translation="MHFSSYQDLRSSLLAGQTTCEEVTKSYLERIDRHCDDNIFLAVF
HEQALSRARSLDRRFSEGGTPGLLFGMPMAIKDNISIKGARLTCASRILENYESVYDA
TVIERLLNEDAVFIGKTNMDEFAMGSSNENSAFGPVANPFDKTRVPGGSSGGSAAAVA
AGLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLARNSD
DAALVLGVMAGADERDATSSRHAVSNYAEEMAAVSPDGLKIGVPKEFFHESLNPDVAR
LVKAKLEELREKGAELVDITLPASDYAIAAYYILVTAEASSNLARFDGARYGYRSPNC
DNLSAMYVNSRTEGFGKEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQDRYREALE
KVDVIAGPTSPFPPFGIGDKMDDPLEMYLADVFTVPASIVGMPAISVPIGYDSLNLPV
GMHLICNFFEEGKLLGIAGLMQHSIV"
misc_feature 443441..444844
/gene="gatA"
/locus_tag="Cpha266_0399"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature 443477..444856
/gene="gatA"
/locus_tag="Cpha266_0399"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene 444915..445814
/locus_tag="Cpha266_0400"
/db_xref="GeneID:4568655"
CDS 444915..445814
/locus_tag="Cpha266_0400"
/EC_number="6.2.1.5"
/note="TIGRFAM: succinyl-CoA synthetase, alpha subunit;
PFAM: CoA-binding domain protein; ATP-citrate
lyase/succinyl-CoA ligase;
KEGG: plt:Plut_1748 succinyl-CoA ligase, alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase subunit alpha"
/protein_id="YP_910883.1"
/db_xref="GI:119356239"
/db_xref="InterPro:IPR003781"
/db_xref="InterPro:IPR005810"
/db_xref="InterPro:IPR005811"
/db_xref="GeneID:4568655"
/translation="MSVLVNKDTRLVVQGITGGEGTFHTSQILEYGTNVVAGVTPGKG
GTIYHGNERDHFCRPVPVFNTVKDAVDKAEANATVIFVPAPFAADAIMEAADAGLKVI
ICITEGIPVNDMMKAYAFVKEKGAVLVGPNCPGVITPGEAKVGIMPGFIHMKGTIGVV
SRSGTLTYEAVHQLTAVGLGQSTCIGIGGDPIIGTRFIDAIKLFAKDDETEGLVMIGE
IGGSAEEEAAEYIKRYFKKPVVGFIAGRTAPPGRRMGHAGAIVSGGKGTAEDKIHAME
AAGIHMVDNPGDIGTAMLKALGR"
misc_feature 444915..445811
/locus_tag="Cpha266_0400"
/note="succinyl-CoA synthetase subunit alpha; Validated;
Region: PRK05678"
/db_xref="CDD:180194"
misc_feature 444924..445241
/locus_tag="Cpha266_0400"
/note="CoA binding domain; Region: CoA_binding;
smart00881"
/db_xref="CDD:197949"
misc_feature 445392..445754
/locus_tag="Cpha266_0400"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:201299"
gene complement(445899..446879)
/locus_tag="Cpha266_0401"
/db_xref="GeneID:4568656"
CDS complement(445899..446879)
/locus_tag="Cpha266_0401"
/EC_number="5.3.1.13"
/note="KEGG: cch:Cag_0467 KpsF/GutQ;
TIGRFAM: KpsF/GutQ family protein;
PFAM: CBS domain containing protein; sugar isomerase
(SIS)"
/codon_start=1
/transl_table=11
/product="KpsF/GutQ family protein"
/protein_id="YP_910884.1"
/db_xref="GI:119356240"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR004800"
/db_xref="GeneID:4568656"
/translation="MISQPETAAIIDSGKNILEQEAQAIHRIADRLDDNFARAIALIL
SCKGKIIVSGMGKSGIIGQKIAATMASTGTTALFLHPADAAHGDLGIVCSGDIVICLS
KSGTTEELNYIIPALKKTGASIIALTGNSRSYLAKSADIVLDTGIEQEACPYDLAPTT
STTAMLAMGDALSMTLMQAKNFTPVDFALTHPKGSLGRRLTMKVSDIMASGDTMPVVN
EDAAVTDLILEMTSKRYGVSAIINKKGVLTGIFTDGDLRRLVQKGDDFLNLTARSVMT
ANPKTVGAERLATECLEILETYRITQLIVCDIDQRPAGIIHIHDLISLGL"
misc_feature complement(445902..446843)
/locus_tag="Cpha266_0401"
/note="D-arabinose 5-phosphate isomerase; Provisional;
Region: PRK10892"
/db_xref="CDD:182814"
misc_feature complement(446355..446738)
/locus_tag="Cpha266_0401"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:88409"
misc_feature complement(order(446574..446576,446706..446708))
/locus_tag="Cpha266_0401"
/note="putative active site [active]"
/db_xref="CDD:88409"
misc_feature complement(445914..446249)
/locus_tag="Cpha266_0401"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:73104"
gene 447003..447350
/locus_tag="Cpha266_0402"
/db_xref="GeneID:4568657"
CDS 447003..447350
/locus_tag="Cpha266_0402"
/note="KEGG: cte:CT0272 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910885.1"
/db_xref="GI:119356241"
/db_xref="GeneID:4568657"
/translation="MSWVILFSFSLAFFFVLMFLLNRFVSYMKKEQNLEIESFKDSLI
DKDNPVGLRGEELEKLKQQQSEAQRHLREVIAKIPVIQKDGRFQLDEEALRQRKEAEN
RNGTSGSVTKDRA"
gene 447357..448871
/locus_tag="Cpha266_0403"
/db_xref="GeneID:4568658"
CDS 447357..448871
/locus_tag="Cpha266_0403"
/note="PFAM: polysaccharide biosynthesis protein;
KEGG: plt:Plut_1745 polysaccharide biosynthesis protein"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_910886.1"
/db_xref="GI:119356242"
/db_xref="InterPro:IPR002797"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:4568658"
/translation="MLSKLKLLARDTVIYGASTILSRSLNYLLVPLYANKLSTFDNGV
QTLVYANIALANVLFSYGLETAYLKSASDSLREGKDGKGFFSTAFFSLLVTATLFSLI
IVFFSADISVLLGMTPAEYAFVRYAAIILWIDTILVIPFAELRLKRKAVQFAIARVTG
VVAVVIAAMILVIPFHAGLQGAFIANIIGSAVSGLMVFPVFMQLRPFFSFHQFRELIQ
IGLPYVPAGIAGLLIHLIDRNILIRISSSDIERIYGEGYVASDILGIYGRVVAFGIIL
QLFIQVFRFAWQPFFLQHASDPDAKRLFRYVLSISTLFTMVLALASTFFVPDLVRYHY
ADRFYLLPPRYWIGLSVLPWIFLSYVFDMISTNLTAGLLITGNTRSLPMVTFSGALVT
SLVCWALVPVNGMEGAAYAIVAGTFVMCLVMAYYSLKFYPNRYDWLKLSLLLAVGGVF
AGIGLWFETIAAGMVLIVLVKIALLVLFFLLVVFAFNEEVRLVAEKIAHKLKKR"
misc_feature 447357..448742
/locus_tag="Cpha266_0403"
/note="Membrane protein involved in the export of
O-antigen and teichoic acid [General function prediction
only]; Region: RfbX; COG2244"
/db_xref="CDD:32425"
misc_feature 447378..448127
/locus_tag="Cpha266_0403"
/note="MatE; Region: MatE; cl10513"
/db_xref="CDD:209159"
gene complement(448922..449428)
/locus_tag="Cpha266_0404"
/db_xref="GeneID:4568659"
CDS complement(448922..449428)
/locus_tag="Cpha266_0404"
/note="KEGG: plt:Plut_1743 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910887.1"
/db_xref="GI:119356243"
/db_xref="GeneID:4568659"
/translation="MDFLASKRFVTTSLVILVLLNLTLLGILWMQNFSGKQAPVQVKI
TRQYNRQIYFTAPLALSEKQAISFQELRREHFRRVRPEMQAISLLKEQLVKEAIRDNP
DSLKIVKLAESIGKHQTSVERQLAEHFHELSEVCTPSQRDSLQKILTHMGKRQMHIRK
DTIENLTR"
misc_feature complement(449003..>449281)
/locus_tag="Cpha266_0404"
/note="Heavy-metal resistance; Region: Metal_resist;
pfam13801"
/db_xref="CDD:205974"
gene complement(449575..450156)
/locus_tag="Cpha266_0405"
/db_xref="GeneID:4568660"
CDS complement(449575..450156)
/locus_tag="Cpha266_0405"
/note="KEGG: cch:Cag_0471 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910888.1"
/db_xref="GI:119356244"
/db_xref="GeneID:4568660"
/translation="MNKKTVTMITAMLLGFSSIASATDYSSYSDAKLSEMRGTMRTAS
QEERQAYQTECQKRTALTSPDQRSNRAGITRHKTKGSSPMILKEQLGLSDTQSRQLQE
MRQKHAGLATKERSRLAELQRQLMDASMTSNPDKQRIAVLAQQIGKEQSDLAIMRSAS
IQEVASVLTPKQREKMKTFMLQISPRKQGGMKM"
sig_peptide complement(450088..450156)
/locus_tag="Cpha266_0405"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.980 at
residue 23"
misc_feature complement(449617..449892)
/locus_tag="Cpha266_0405"
/note="CpxP component of the bacterial Cpx-two-component
system and related proteins; Region: CpxP_like; cd09916"
/db_xref="CDD:197366"
misc_feature complement(order(449617..449619,449626..449631,
449662..449664,449671..449673,449680..449685,
449692..449694,449704..449706,449716..449718,
449728..449730,449737..449739,449749..449751,
449755..449757,449767..449772,449779..449781,
449791..449793))
/locus_tag="Cpha266_0405"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:197366"
gene complement(450212..450766)
/locus_tag="Cpha266_0406"
/db_xref="GeneID:4568661"
CDS complement(450212..450766)
/locus_tag="Cpha266_0406"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910889.1"
/db_xref="GI:119356245"
/db_xref="GeneID:4568661"
/translation="MKKRALAASLAATIMTFGNSAGAADYRDSYAVEQNRYRNESRQE
QSDERFTRDERQRNGYQDRQRQAPVIHDDFRTVKAALELDDRQLDRFVAIRENYREHT
GSVYREIALLKEIRQNEEMRKQRNFRTIAKLNRKISALQDELNRYRIRSIRNYRDVCN
NQQRERFDRFAAHNNPTFALMFRF"
sig_peptide complement(450695..450766)
/locus_tag="Cpha266_0406"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 1.000) with cleavage site probability 0.976 at
residue 24"
gene complement(450871..451251)
/locus_tag="Cpha266_0407"
/db_xref="GeneID:4568662"
CDS complement(450871..451251)
/locus_tag="Cpha266_0407"
/note="KEGG: cte:CT0277 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910890.1"
/db_xref="GI:119356246"
/db_xref="GeneID:4568662"
/translation="MKHNIDTKEEEVRKIMQLLDEMQPLKVSPLFRVHLMEKVEAVSN
NRRSETFHSFNPRLAFAALLVVINISSAMLFFSSTEQQAKETASNATETVNDDYTSPA
LAYYTETGTEFSGSELNDNQNSNR"
gene complement(451326..451934)
/locus_tag="Cpha266_0408"
/db_xref="GeneID:4568663"
CDS complement(451326..451934)
/locus_tag="Cpha266_0408"
/note="PFAM: sigma-70 region 2 domain protein; sigma-70
region 4 domain protein; Sigma-70, region 4 type 2;
KEGG: cte:CT0278 RNA polymerase sigma-70 factor, ECF
subfamily"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-24 factor"
/protein_id="YP_910891.1"
/db_xref="GI:119356247"
/db_xref="InterPro:IPR000838"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR013249"
/db_xref="GeneID:4568663"
/translation="MEKRGEAAVTIPATHEALLDSRATSKDDQFRKLVLEHQEMVLNT
CFRFVFNREDAEDLAQDVFVEVYRSLDQFREESKLSTWIYRIAVTKSLDYLRRLKRKK
RFSSLKRVIGIEDPSEDLPDTAGSNPLQSLAGKENANLLLDALNALPENQKTAFLLSK
QDGYSNQEIADILQSSVSAVESLIHRAKKNLHDKLYKHFKQT"
misc_feature complement(451350..451871)
/locus_tag="Cpha266_0408"
/note="RNA polymerase sigma factor RpoE; Provisional;
Region: PRK09652"
/db_xref="CDD:182019"
misc_feature complement(<451674..451838)
/locus_tag="Cpha266_0408"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(451362..451490)
/locus_tag="Cpha266_0408"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(451371..451373,451377..451382,
451386..451394,451398..451403,451407..451409,
451437..451442,451458..451460,451488..451490))
/locus_tag="Cpha266_0408"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(452118..452512)
/locus_tag="Cpha266_0409"
/pseudo
/db_xref="GeneID:4568664"
gene complement(452555..453937)
/locus_tag="Cpha266_0410"
/db_xref="GeneID:4568665"
CDS complement(452555..453937)
/locus_tag="Cpha266_0410"
/EC_number="5.4.2.8"
/note="PFAM: phosphoglucomutase/phosphomannomutase C
terminal; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain I;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain II; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain III;
KEGG: plt:Plut_1740 phosphoglucomutase"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="YP_910892.1"
/db_xref="GI:119356248"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="GeneID:4568665"
/translation="MQVKFGTDGWRAIIAKDYTYENLKLAALASARYFQSQPGRSKGV
CIGYDTRFMSKEFAEYTAEVLSSAGIRVFLSDSFVSTPAVSLYTKAKQLAGGIVITAS
HNPPNYNGFKVKAAYGGPANPEAIAEIESNLLEIDPKTEIKPDMKLIESVDMKSFYMN
YLKTHVDLQLIRESRIKIAHNAMYGAGQDIITRLFDESMVNCYHCTINPGFGGINPEP
MPQYIEEFVDFFKEVETDVAIINDGDADRVGMLDEKARFVDSHKLFAIILKYLVEERH
QTGEVAKTFALTDVINKICRKNNLVLHELPVGFKYVSKLMSTNDILIGGEESGGIGIT
SFLPERDGVYIGLLILEIMTRKEKSLSGLVEELYDEYGYFAFTRNDLHVSEAKKQAII
AKAAAGNLETVAGYKVLGFSDLDGYKYHFEGGWLLIRPSGTEPVLRLYCEADTDEKVS
KVLAFAAKLA"
misc_feature complement(452561..453937)
/locus_tag="Cpha266_0410"
/note="Phosphomannomutase [Carbohydrate transport and
metabolism]; Region: {ManB}; COG1109"
/db_xref="CDD:31306"
misc_feature complement(452558..453931)
/locus_tag="Cpha266_0410"
/note="This PGM-like (phosphoglucomutase-like) protein of
unknown function belongs to the alpha-D-phosphohexomutase
superfamily and is found in both archaea and bacteria. The
alpha-D-phosphohexomutases include several related enzymes
that catalyze a reversible...; Region: PGM_like2; cd05800"
/db_xref="CDD:100093"
misc_feature complement(order(452624..452626,452639..452647,
452651..452653,452948..452950,452954..452956,
452960..452962,453011..453019,453080..453082,
453197..453202,453206..453208,453212..453214,
453602..453604,453626..453634,453905..453907,
453914..453916,453920..453922))
/locus_tag="Cpha266_0410"
/note="active site"
/db_xref="CDD:100093"
misc_feature complement(order(452624..452626,452639..452647,
452651..452653,452948..452950,452954..452956,
452960..452962,453011..453013,453017..453019,
453080..453082,453197..453199,453632..453634,
453914..453916))
/locus_tag="Cpha266_0410"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100093"
misc_feature complement(order(453200..453202,453206..453208,
453212..453214,453632..453634))
/locus_tag="Cpha266_0410"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100093"
gene 454044..455186
/locus_tag="Cpha266_0411"
/db_xref="GeneID:4568666"
CDS 454044..455186
/locus_tag="Cpha266_0411"
/EC_number="2.4.1.182"
/note="KEGG: plt:Plut_1739 glycosyl transferase, family
19;
TIGRFAM: lipid-A-disaccharide synthase;
PFAM: glycosyl transferase, family 19"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_910893.1"
/db_xref="GI:119356249"
/db_xref="InterPro:IPR003835"
/db_xref="GeneID:4568666"
/translation="MPKKLFVLAGEVSGDLHAAGVVAELLKARPDVRVFGIGGEKLRA
LGAELFYDTRRMSIMGFLEVLKHAGFLQRVIREMKELVRQEKPDLAFLVDYPGMNLLM
ARFFHEEGVPVIYYISPQVWAWKEGRVKAIGRYVDRLLVIFDFEVEFFRRHGIRAEFV
GHPVIEELSAVSLPPRELFFRRHHILPGQRLVGMLPGSRRQEIALVFPEMLKAARMLA
ADYDVVFLLGRSPQMDEKHFSLVSAFDDIRIVECTAYEVMRFSELELVTSGTATLESL
CFGVPMIVLYKTAWLNYAVGRLLVRLTSISLANIVTKGLGSKDQVVPELLQHEATASG
IYMIARRLLDHPQLLAEMRQELLDAREKLASASPSQIISEILQEYL"
misc_feature 454047..455174
/locus_tag="Cpha266_0411"
/note="lipid-A-disaccharide synthase; Reviewed; Region:
lpxB; PRK00025"
/db_xref="CDD:178802"
misc_feature 454047..455051
/locus_tag="Cpha266_0411"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:184498"
gene 455202..455474
/locus_tag="Cpha266_0412"
/db_xref="GeneID:4570966"
CDS 455202..455474
/locus_tag="Cpha266_0412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910894.1"
/db_xref="GI:119356250"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4570966"
/translation="MEKAADLLLGNPVLLLIAVIAAVMVLFSCLRNMFRLALFAAALF
VLYIAYLSLTGGDAPAAVREIQETIAASFSHVSTMIKSFFDLLKSR"
gene complement(455497..457476)
/locus_tag="Cpha266_0413"
/db_xref="GeneID:4570967"
CDS complement(455497..457476)
/locus_tag="Cpha266_0413"
/note="these proteins belong to a family of
oxidoreductases related to the NADPH-dependent glutamate
synthase"
/codon_start=1
/transl_table=11
/product="putative NADPH-dependent glutamate synthase
small subunit"
/protein_id="YP_910895.1"
/db_xref="GI:119356251"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4570967"
/translation="MNALTLTINGLKTTVQPGTSILDAAASCGITIPTLCFQQSLDVQ
GACWICIVEIKGKNRFVPACSTKVSAGMVIETETEELHMMRRRTLERLIEQHCGDCLG
QCELACPAGCNIPGFISEIAAHHDDEAIAIIKNTIPLPGILGRVCPAPCEDACRRHGV
DDPVSICALKRYAADRDMEASERYIPAIAEKSGKHVAVIGAGPAGLTAAYYLLALGHE
VTIYDEHPAAGGMMRYGIPRFRLPESVIDKDVEPLEQMGATFRFNTRFGKDISTASLQ
SAFDAIFLAVGAQQAAAMHIPGEHETGVLSGIEFLRQANEGVAEHPGANVVVVGGGNT
AVDAARTALRLGATTVTILYRRTKEEMPANQQEINEAIAEGITLHVLALPVSMRRMNG
FTEITAIAMRQGEPDESGRKKPVPINGSEFTIAANTVISATGQQVDCSIAMAAGIGTS
PEGTFDVNQATLQSNIAGIFSAGDCVTGPDLAITAVSEGRRAAHSIHLFLQGKPVVGK
PQQFNSSYGPRDQAPEAFYSKANPFEKIALPEISLLERSGTFREVVLGLSPEDAAQEA
LRCLQCRCNAIDNCRLRELAALYLPSGSCKLEEKLDFEIISGTDIRIEREKCVDCGIC
VRTLEQYGTEHEPDYQKLSTSCPTGALSEAMLNKK"
misc_feature complement(455521..457476)
/locus_tag="Cpha266_0413"
/note="putative NADPH-dependent glutamate synthase small
subunit; Provisional; Region: PRK12814"
/db_xref="CDD:139246"
misc_feature complement(457252..457452)
/locus_tag="Cpha266_0413"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(457285..457290,457327..457338,
457342..457344,457369..457371,457378..457383))
/locus_tag="Cpha266_0413"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(457285..457287,457327..457329,
457336..457338,457369..457371))
/locus_tag="Cpha266_0413"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(457509..458495)
/gene="ispH"
/locus_tag="Cpha266_0414"
/gene_synonym="lytB"
/db_xref="GeneID:4570968"
CDS complement(457509..458495)
/gene="ispH"
/locus_tag="Cpha266_0414"
/gene_synonym="lytB"
/EC_number="1.17.1.2"
/note="catalyzes the conversion of
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP); functions in the nonmevalonate
isoprenoid biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-enyl diphosphate
reductase"
/protein_id="YP_910896.1"
/db_xref="GI:119356252"
/db_xref="InterPro:IPR003451"
/db_xref="GeneID:4570968"
/translation="MKINLDRTSSGFCIGVQGTIHVAEEKLNNPDKLFSLGDVVHNEA
EVNRLEHLGLTTIDESGFHELKNAQLLIRAHGEPPSTYRIAEKNNLVITDTTCPVVSR
LQRTARLLHELGYQIIIYGKPSHPEVIGINGHCKNSAVIIKHPDLSDPSETGQIDLKR
KTALISQTTMDVPGFYELKANIRNLFAADSEEIRNENDHLWMAIRDIDLTASLTGIRD
MPRYVYKDTICRQVSSRNQMLHDFAIANSCVIFVAGKKSSNGQVLFGICKAANPCTYF
IEDIDEIDDAWLTGSDGRTVESVGICGATSTPMWLLEKVAAHLQRRYNHDPA"
misc_feature complement(457530..458495)
/gene="ispH"
/locus_tag="Cpha266_0414"
/gene_synonym="lytB"
/note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
Reviewed; Region: ispH; PRK01045"
/db_xref="CDD:179212"
misc_feature complement(457536..458465)
/gene="ispH"
/locus_tag="Cpha266_0414"
/gene_synonym="lytB"
/note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate
reductase (IPP and DMAPP forming); Region: ispH_lytB;
TIGR00216"
/db_xref="CDD:161769"
gene complement(458654..459472)
/locus_tag="Cpha266_0415"
/db_xref="GeneID:4570969"
CDS complement(458654..459472)
/locus_tag="Cpha266_0415"
/EC_number="5.1.1.3"
/note="converts L-glutamate to D-glutamate, a component of
peptidoglycan"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_910897.1"
/db_xref="GI:119356253"
/db_xref="InterPro:IPR001920"
/db_xref="InterPro:IPR004391"
/db_xref="GeneID:4570969"
/translation="MQHHKATPESPIGIFDSGVGGLTVVRAIQAEMPAERIIYFGDTA
RVPYGTKSPATIRKYAHEDTAILMSHLPKIIIVACNTVSALALDVVEKTAGSIPVIGV
LKAGADLAVQVTRNKHVGVIGTQATVSSNAYADAITLLDANIEVVSKACPLFVPLAEE
GFTEHAATRLIASDYLAAFDGHDIDTLVLGCTHYPILRHVITETLHRDIRIIDSAEAV
AGRTRKLLADAKLLSTEKHAPPPHLLVSDLPQKFSMLYKLFMESDLPDVELVEV"
misc_feature complement(458669..459457)
/locus_tag="Cpha266_0415"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:179146"
gene complement(459501..460592)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/db_xref="GeneID:4570970"
CDS complement(459501..460592)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="translation-associated GTPase; the crystal
structure of the Haemophilus influenzae YchF protein
showed similarity to the yeast structure (PDB: 1NI3);
fluorescence spectroscopy revealed nucleic acid binding;
the yeast protein YBR025c interacts with the translation
elongation factor eEF1"
/codon_start=1
/transl_table=11
/product="GTP-dependent nucleic acid-binding protein EngD"
/protein_id="YP_910898.1"
/db_xref="GI:119356254"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004396"
/db_xref="InterPro:IPR005289"
/db_xref="InterPro:IPR006073"
/db_xref="InterPro:IPR013029"
/db_xref="GeneID:4570970"
/translation="MSLRCGIVGLPNVGKSTLFNAITAKQAEAANYPFCTIEPNVGTV
LVPDERMQQIANVVKTPTLVPATLEIVDIAGLVKGASKGEGLGNQFLSHIREVDAIVH
VVRCFDDSNIIHVEGKIDPADDIATIETELMLADLDSMEKRIERLRKNSRKEKDLLQL
VDLAEKIIAGLAEGIPARSVIETPEEQETAKQFFLLTSKPILFAANVAEEDLQNGNDY
TRTVAEIAEKAGSKMLIISAKAEADIAELPEEERPMFLESLGLSMSGLDRLIRTAHEL
LGLQTYFTAGEKEVHAWTIRKGAAAPEAAGAIHSDFEKGFIRAEVMFYKDLLELGSEQ
KVKEAGKLRSEGREYIVRDGDIIVFRFNV"
misc_feature complement(459504..460592)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:181981"
misc_feature complement(459762..460580)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature complement(460545..460568)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature complement(order(459876..459884,459966..459968,
459972..459977,460542..460553,460557..460559))
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature complement(460476..460499)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature complement(460485..460487)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature complement(order(460305..460334,460353..460382))
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature complement(460368..460379)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature complement(459966..459977)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature complement(459876..459884)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature complement(459510..459758)
/locus_tag="Cpha266_0416"
/gene_synonym="ychF"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene 460716..461429
/gene="cmk"
/locus_tag="Cpha266_0417"
/db_xref="GeneID:4570971"
CDS 460716..461429
/gene="cmk"
/locus_tag="Cpha266_0417"
/EC_number="2.7.4.14"
/note="Catalyzes the formation of (d)CDP from ATP and
(d)CMP"
/codon_start=1
/transl_table=11
/product="cytidylate kinase"
/protein_id="YP_910899.1"
/db_xref="GI:119356255"
/db_xref="InterPro:IPR003136"
/db_xref="InterPro:IPR011769"
/db_xref="InterPro:IPR011994"
/db_xref="GeneID:4570971"
/translation="MKQRNQEKRIIIAIDGPAASGKSTTARKVADRLGYTYIDTGAMY
RSVTLKAIESGLMDTLRSSPERVVDLLAGLSVCFSGDRIMLDGRDVTLAIRENRVSRE
VSFISSLKPVRDTMRQMQQDMGRGRGVVMDGRDIGTVVFPDAELKVFLTADVRQRAMR
RYAELAVKSGDPSELPCLEDLEREILDRDRADAEREHAPLKKHPDARELDTSSLTIDV
QTDMVCSMAEDILKKKQNG"
misc_feature 460734..461414
/gene="cmk"
/locus_tag="Cpha266_0417"
/note="cytidylate kinase; Provisional; Region: cmk;
PRK00023"
/db_xref="CDD:178800"
misc_feature 460746..461351
/gene="cmk"
/locus_tag="Cpha266_0417"
/note="Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate (CMP)
to produce cytidine diphosphate (CDP), using ATP as the
preferred phosphoryl donor; Region: CMPK; cd02020"
/db_xref="CDD:73296"
misc_feature order(461052..461054,461115..461120,461298..461300)
/gene="cmk"
/locus_tag="Cpha266_0417"
/note="CMP-binding site; other site"
/db_xref="CDD:73296"
misc_feature order(461277..461279,461289..461291)
/gene="cmk"
/locus_tag="Cpha266_0417"
/note="The sites determining sugar specificity; other
site"
/db_xref="CDD:73296"
gene 461536..463311
/gene="rpsA"
/locus_tag="Cpha266_0418"
/db_xref="GeneID:4570972"
CDS 461536..463311
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="in Escherichia coli this protein is involved in
binding to the leader sequence of mRNAs and is itself
bound to the 30S subunit; autoregulates expression via a
C-terminal domain; in most gram negative organisms this
protein is composed of 6 repeats of the S1 domain while in
gram positive there are 4 repeats; the S1 nucleic
acid-binding domain is found associated with other
proteins"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S1"
/protein_id="YP_910900.1"
/db_xref="GI:119356256"
/db_xref="InterPro:IPR000110"
/db_xref="InterPro:IPR003029"
/db_xref="GeneID:4570972"
/translation="MAETLTLEKKVQERLARKKVKYFAHYEPAELEQMEMLYTSTLCE
ITEDEIVKGRIVSISNKDVTIDVGFKSEGIVSLLEFRDDDDVAVGDEVEVYLENIEDK
MGQLILSKKKADVLRIWDKIYDSIENDTIINGKIINRVKGGMTVSLSGVEAFLPGSQI
DVKPVRDFDALVGQTMDFRVVKINPVTQNIVVSHKVILEEAYAARREEMLANIKVGMV
LEGTVKNITDFGIFVDLGGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVGFDENT
KRVSLGMKQLEAHPWENIEIKYPVGSKARGRIVSITDYGAFVEIEKGIEGLVHISEMS
WTQHIKHPSQFVSLNQEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYIEASLHK
GTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELDVKVLKFDVNA
RRIALGHKQINPDPWDDFEQKYAVGAETPARISQIIEKGVIVILPGDVDGFVPVSHLL
QGGVKDIHSSFALGDELPLRVIEFDKENKRIILSALEYFKDKSKEEIEAYLQAHPNEK
KEIEDATAELEPQVKSAEKKSGEAK"
misc_feature 461593..463296
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="30S ribosomal protein S1; Reviewed; Region: rpsA;
PRK06299"
/db_xref="CDD:180520"
misc_feature 461680..461868
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec1_hs1; cd05687"
/db_xref="CDD:88442"
misc_feature order(461701..461703,461725..461727,461755..461757,
461761..461763)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88442"
misc_feature 461920..462120
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec2_hs2; cd04465"
/db_xref="CDD:88430"
misc_feature order(461944..461946,461968..461970,461995..461997,
462001..462003)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88430"
misc_feature 462178..462381
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec3; cd05688"
/db_xref="CDD:88443"
misc_feature order(462205..462207,462229..462231,462256..462258,
462262..462264)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88443"
misc_feature 462427..462639
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(462460..462462,462484..462486,462514..462516,
462520..462522)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 462709..462903
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec5; cd05690"
/db_xref="CDD:88445"
misc_feature order(462721..462723,462745..462747,462775..462777,
462781..462783)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88445"
misc_feature 462955..463161
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="Ribosomal protein S1-like RNA-binding domain;
Region: S1; smart00316"
/db_xref="CDD:197648"
misc_feature order(462982..462984,463006..463008,463036..463038,
463042..463044)
/gene="rpsA"
/locus_tag="Cpha266_0418"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
gene complement(463386..464303)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/db_xref="GeneID:4570973"
CDS complement(463386..464303)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_910901.1"
/db_xref="GI:119356257"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005662"
/db_xref="InterPro:IPR006073"
/db_xref="GeneID:4570973"
/translation="MDASSFSCGFAVIIGAPNAGKSTLLNKLLDYKLSIVTPKPQTTR
KRITGIYHKDQCQIIFLDTPGIMKPQQKLHESMLEITRATLKDADVVLALLPYSRQSG
SVDLEFTEDLFSSWLNPSGKPVIAVLNKSDLVSAEAKRTCESVIQNSFHPKAVLSISA
QLGNNIEGLISALKPFLPLKEPLYPEETLSTDPERLFVTEIIREKIFLLYGNEIPYAS
EVIIDEFKEQHENDPSRKDLIRCSIIVERDSQKQILIGSKGAALKKLGQAARLDIEEL
LGRPVFLELFIKVRNDWRKKNNLLKSYGY"
misc_feature complement(463389..464294)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature complement(463773..464288)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature complement(464238..464261)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature complement(order(463824..463829,463908..463910,
463914..463919,464109..464111,464175..464183,
464193..464195,464235..464255))
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature complement(order(464166..464210,464214..464216))
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature complement(464175..464177)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature complement(order(464043..464048,464106..464123))
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature complement(464109..464120)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature complement(463908..463919)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature complement(463821..463829)
/gene="era"
/locus_tag="Cpha266_0419"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G5 box; other site"
/db_xref="CDD:206726"
gene 464415..465641
/locus_tag="Cpha266_0420"
/db_xref="GeneID:4570974"
CDS 464415..465641
/locus_tag="Cpha266_0420"
/note="PFAM: cell cycle protein;
KEGG: plt:Plut_1730 rod shape-determining protein RodA"
/codon_start=1
/transl_table=11
/product="cell cycle protein"
/protein_id="YP_910902.1"
/db_xref="GI:119356258"
/db_xref="InterPro:IPR001182"
/db_xref="GeneID:4570974"
/translation="MTDKQSNVDFWLLVPMIGLIVFGLMAIFSATHGAGETTLFYRQF
AWGVIGAVVMLFVYFNDYRVIRDNAYLLYLISIFLLVVVLLFGTKIAGQTSWVKIGFF
SFQPSEIAKMATILALARFLSDDETDITFTPHLLIALGIPLFPALLIMLQPDMGTTLT
SLSFIIPMFIMSGFDLYIVIPYLLPIILMLSGFFNVFYIVGLAVLLFLALWLQKKKFK
MHQLLVTAAGLGAALFTNRFAAELLKPHQLKRIQTFLDPMSDPRGAGYNVIQAKIAIS
SGGFFGKGYLEGTQTQLRFIPAQWTDFIFCVIAEELGFVGSFVLLLLFLVLILRLLWI
ISSIKNKFVELTLAGFVSLLLIHVIINIGMTIGLIPVIGVPLPFVSYGGSSLLGNMIM
VALALNFVHNKRSIGY"
sig_peptide 464415..464516
/locus_tag="Cpha266_0420"
/product="hypothetical protein"
/note="Signal predicted by SignalP 2.0 HMM (Signal peptide
probabilty 0.781) with cleavage site probability 0.765 at
residue 34"
misc_feature 464439..465608
/locus_tag="Cpha266_0420"
/note="rod shape-determining protein RodA; Region:
rodA_shape; TIGR02210"
/db_xref="CDD:211724"
gene complement(465769..466218)
/locus_tag="Cpha266_0421"
/db_xref="GeneID:4570975"
CDS complement(465769..466218)
/locus_tag="Cpha266_0421"
/note="KEGG: cte:CT0291 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910903.1"
/db_xref="GI:119356259"
/db_xref="GeneID:4570975"
/translation="MAKTEMGSPDKYDLFAEKIDQFKLLVEEKKNLQEQIMLLQEEFN
EKIKPFENQLSTVVRKLELELARVEGKTSEKPAPLKYSRGRLGISIKELLGNSPDRAF
KPKEIADALSTKGTTVSLWLNKYGSSDQEIERIPSENGGKRFLYKIK"
gene 466369..467709
/locus_tag="Cpha266_0422"
/db_xref="GeneID:4570976"
CDS 466369..467709
/locus_tag="Cpha266_0422"
/note="KEGG: plt:Plut_1728 MiaB-like tRNA modifying
enzyme;
TIGRFAM: RNA modification enzyme, MiaB family;
PFAM: Radical SAM domain protein; Protein of unknown
function UPF0004-like;
SMART: Elongator protein 3/MiaB/NifB"
/codon_start=1
/transl_table=11
/product="RNA modification protein"
/protein_id="YP_910904.1"
/db_xref="GI:119356260"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR013848"
/db_xref="GeneID:4570976"
/translation="MPKITAITLGCKLNYAESSAILDLLSKKGWEISSYEKNEDLIII
NTCAVTKQAEQKCRQKIRKIIRDNPGSRIVVTGCYAQLSPEVLCKIDGVNAILGSSDK
YALPLYEVIGNIESSLPLISVSEIKKEKTIFPGYSLPATFASERTRAFLKIQDGCDYG
CAYCTIPFARGRSRSFSPDDIIAQASALVASGYREIVLTGVNIGDYRYRGVRLAALLR
MLEKVPVARIRISSIEPDILDDALIAVVAASEIIAPHFHLPLQSGSDAVLRAMCRRYD
TAGYRQRILRAVEAIADCSVSSDVMVGYPGESADDYRNMYRFLEGLPISSLHVFSCSV
RPGTQLAEQVATKKREVVDPDECRQRSSELIKLGNLKKSRFMEGYVGMECMVLFEESQ
KGANGTRKYSGYTRNYLRVTVTVSESSVHLAGSILPVFIEGIDDDLNLMGRLLF"
misc_feature 466369..467703
/locus_tag="Cpha266_0422"
/note="2-methylthioadenine synthetase [Translation,
ribosomal structure and biogenesis]; Region: MiaB;
COG0621"
/db_xref="CDD:30966"
misc_feature 466375..466662
/locus_tag="Cpha266_0422"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 466819..467394
/locus_tag="Cpha266_0422"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(466837..466839,466843..466845,466849..466851,
466855..466863,466963..466965,466978..466983,
467059..467064,467143..467145,467269..467271,
467359..467364)
/locus_tag="Cpha266_0422"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 467760..468293
/locus_tag="Cpha266_0423"
/db_xref="GeneID:4570977"
CDS 467760..468293
/locus_tag="Cpha266_0423"
/EC_number="2.4.2.7"
/note="catalyzes a salvage reaction resulting in the
formation of AMP which is metabolically less costly than a
de novo synthesis"
/codon_start=1
/transl_table=11
/product="adenine phosphoribosyltransferase"
/protein_id="YP_910905.1"
/db_xref="GI:119356261"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR005764"
/db_xref="GeneID:4570977"
/translation="MTIKSRIRSIPDYPKKGIMFRDITTLIKDPVGFRLVIDNLTQHY
LQNGVDFDVIVGIEARGFIIGGALSYALGKGFVPVRKPGKLPADVASQKYELEYGSDT
IEIHIDALEEGSRVLLVDDLLATGGTALAAAALVEKVGGVVAEMAFIVNLPDVGGEQR
ILDKGYSIFSLTDFEGD"
misc_feature 467865..>468122
/locus_tag="Cpha266_0423"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
gene complement(468916..469224)
/locus_tag="Cpha266_0424"
/db_xref="GeneID:4570978"
CDS complement(468916..469224)
/locus_tag="Cpha266_0424"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: cte:CT0295 DNA-binding protein HU-alpha, putative"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_910906.1"
/db_xref="GI:119356262"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:4570978"
/translation="MGTTTTKADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGK
RIEIRGFGSFNIRHKNLRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKNGQE
"
misc_feature complement(468949..469209)
/locus_tag="Cpha266_0424"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(468949..468951,468970..468972,
468976..468978,468988..468993,469057..469059,
469072..469077,469084..469098,469108..469113,
469120..469125,469132..469134,469174..469176,
469186..469188,469195..469197,469204..469209))
/locus_tag="Cpha266_0424"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(468964..468966,468973..468975,
468979..468981,468991..468993,469021..469032,
469039..469041,469045..469050,469054..469056,
469066..469068,469075..469080,469084..469086,
469090..469092,469135..469137,469201..469209))
/locus_tag="Cpha266_0424"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene complement(469269..469634)
/locus_tag="Cpha266_0425"
/db_xref="GeneID:4570979"
CDS complement(469269..469634)
/locus_tag="Cpha266_0425"
/note="KEGG: cte:CT0296 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910907.1"
/db_xref="GI:119356263"
/db_xref="GeneID:4570979"
/translation="MQFMIMFITGIAGGILAGMFGVGGGIIIVPVLVLLVGMTQHSAS
ATSLVALLLPVGILGVMEYYRSGRITTEHLWFGLIIALGLFIGAYFGAKIAISLSSDT
LRKAFAVFTGIVAFRLWFK"
gene complement(469677..471635)
/locus_tag="Cpha266_0426"
/db_xref="GeneID:4570980"
CDS complement(469677..471635)
/locus_tag="Cpha266_0426"
/EC_number="3.6.4.6"
/note="KEGG: plt:Plut_1722 peptidase M41, FtsH;
TIGRFAM: ATP-dependent metalloprotease FtsH;
PFAM: peptidase M41; AAA ATPase, central domain protein;
peptidase M41, FtsH extracellular; ATPase associated with
various cellular activities, AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="FtsH peptidase"
/protein_id="YP_910908.1"
/db_xref="GI:119356264"
/db_xref="InterPro:IPR000642"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR003960"
/db_xref="InterPro:IPR005936"
/db_xref="InterPro:IPR011546"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4570980"
/translation="MPENKKERPVKKDSSNKFKPVRNDDQPQGWLPGKTGGGQGKFPV
VLVFMLLAFLMLFLFQRFFSSSDSPEVTYNSYRSLLVSDLVRDVTVKTFSDKSAIING
KLKSVTKLELTNSMTLESDRFSVRIPAFSVEQADLLAEKGIRVKVEDGTPAFTAFLML
FAPWIIFGLLYFFIFRRMSSQNGNAAKNIFSFGKSRAKMVSEFDVKTSFKDVAGVDEA
IEELQETVEFLTNPERFEKIGGKIPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISG
ADFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRSRGAGVGGGHDEREQTLN
QLLVEMDGFTTSENVILIAATNRPDVLDSALLRPGRFDRQITIDKPDIRGREAILKIH
TRKTPLGSDVDLTVLAKSSPGFSGADLANLVNEAALLASREGKEEITALDFEHARDKV
LMGPERRSMYISDEQKKMTAYHEAGHVLVASYTKGSDPIHKVTIIPRGRSLGLTAYLP
LEDRYTHNREYLLAMITYALGGRVAEELVFNEISTGAANDIEKASDIARRMVRQWGMS
EKLGPINYGDSQKEVFLGKDYSHIREYSEETALQIDVEVRNIIMSCMDNAKKILIEKK
SILQKLAETLIEKESLDAGEIRKIIGND"
misc_feature complement(469686..471176)
/locus_tag="Cpha266_0426"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature complement(470499..>470858)
/locus_tag="Cpha266_0426"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(470706..470723)
/locus_tag="Cpha266_0426"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(470526..470528)
/locus_tag="Cpha266_0426"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(469692..470321)
/locus_tag="Cpha266_0426"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 471873..473381
/gene="gltX"
/locus_tag="Cpha266_0427"
/db_xref="GeneID:4570981"
CDS 471873..473381
/gene="gltX"
/locus_tag="Cpha266_0427"
/EC_number="6.1.1.17"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_910909.1"
/db_xref="GI:119356265"
/db_xref="InterPro:IPR000924"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR004527"
/db_xref="GeneID:4570981"
/translation="MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRI
EDTDRSRRVEGAQQNLLKTLEWAGIVPDESPELGGDFGPYIQSERLEIYKKYCDELLE
GKYAYYCFATSEELEENRQLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPY
VIRMKVPDYVSVWFEDLIRGPVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTH
IIRGEEWLPSMPKHLLLYEFFGWEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKG
YSAEAIVNFVAMLGWNEGEGTEQEVYSLEQLVERFSLERVGKAGAIFNVDKLNWLEKQ
YIKSRSADRIIAVIKPLLMAELEKRPTAMHESVITSDLYLEQVIELMRERVGFEHEFV
TFSPYFFFDPETYEEEGVRKRWTAETNTLLREFVTVLASLDAFTAEAIETELKAFVAP
KGLKAAALIHPLRILCSGVSFGPSLYHMLEVLGKDAVIRRISRGIETVVCLS"
misc_feature 471891..473357
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:179296"
misc_feature 471891..>472178
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature 471927..471938
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <472443..472886
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(472479..472481,472491..472493,472533..472538,
472542..472547,472620..472625,472647..472652)
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="active site"
/db_xref="CDD:173905"
misc_feature 472647..472661
/gene="gltX"
/locus_tag="Cpha266_0427"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 473467..473542
/locus_tag="Cpha266_R0011"
/note="tRNA-Phe1"
/db_xref="GeneID:4570982"
tRNA 473467..473542
/locus_tag="Cpha266_R0011"
/product="tRNA-Phe"
/db_xref="GeneID:4570982"
gene 473682..474812
/locus_tag="Cpha266_0428"
/db_xref="GeneID:4570983"
CDS 473682..474812
/locus_tag="Cpha266_0428"
/EC_number="4.2.1.-"
/note="PFAM: hydroxyneurosporene synthase;
KEGG: plt:Plut_1720 hydroxyneurosporene synthase CrtC"
/codon_start=1
/transl_table=11
/product="hydroxyneurosporene synthase"
/protein_id="YP_910910.1"
/db_xref="GI:119356266"
/db_xref="InterPro:IPR010791"
/db_xref="GeneID:4570983"
/translation="MNITTERSQELWHDLQEPGAYEWWYFDAEDKKNGLSIVLIWFGG
FPFSPYYMQHYEEWKKGKTAGPPFPSNYSGFSFQLYENGKETVNFIREGSNGLFESNR
EEIGVRFEQNRFTYDQEQDEYRISVDFSFPARTRKISATLVFKPLRRVIYSKKDGNNS
GHVPRHQWLLSVPRAAVEGSIDITEGRSDISRRIHVEADGYHDHNLGTMPMQEYIKKW
YWGRAFSEEFDLIYYVIFFKNDHYQPVSLLMLHDNRSNQMRIMEDVAFSEHNFSRGVF
SPLHGRVLELRHGNVLLSIHQHKVLDAGPFYLRFASTISLRADGEHLNGISGISEFLN
PSCLRSKVMRFFIKSRIWRDGVPSIMYNQYNYIKNHFDWFRK"
misc_feature 473742..474698
/locus_tag="Cpha266_0428"
/note="Hydroxyneurosporene synthase (CrtC); Region: CrtC;
pfam07143"
/db_xref="CDD:148638"
gene 474993..475541
/locus_tag="Cpha266_0429"
/db_xref="GeneID:4569218"
CDS 474993..475541
/locus_tag="Cpha266_0429"
/EC_number="1.10.99.1"
/note="PFAM: Rieske [2Fe-2S] domain protein;
KEGG: plt:Plut_1719 plastoquinol--plastocyanin reductase"
/codon_start=1
/transl_table=11
/product="plastoquinol--plastocyanin reductase"
/protein_id="YP_910911.1"
/db_xref="GI:119356267"
/db_xref="InterPro:IPR005805"
/db_xref="InterPro:IPR005806"
/db_xref="GeneID:4569218"
/translation="MAQQGNFKSPSRMGGLGEGAPLSSSGAVQAGKPREQGLKGVDFE
RRSFLGKVVGGVGAVVAVSTLYPIVKYIVPPPVKEAAIVSELIVGKASEVPENSGKIY
QFNKDKVLVVNDNGKLTACSAVCTHLGCLVHWEDKDNLIFCPCHGAKYKQTGEIISGP
QPLPLAPFNVRVEGENLIISKA"
misc_feature 475254..475529
/locus_tag="Cpha266_0429"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cd03467"
/db_xref="CDD:58538"
misc_feature order(475365..475367,475371..475376,475419..475421,
475425..475430,475434..475436,475440..475442)
/locus_tag="Cpha266_0429"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:58538"
misc_feature order(475365..475367,475371..475376,475419..475421,
475428..475430,475434..475436)
/locus_tag="Cpha266_0429"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58538"
gene 475569..476864
/locus_tag="Cpha266_0430"
/db_xref="GeneID:4569219"
CDS 475569..476864
/locus_tag="Cpha266_0430"
/note="PFAM: Cytochrome b/b6, N-terminal domain;
KEGG: plt:Plut_1718 cytochrome b-c complex, cytochrome b
subunit"
/codon_start=1
/transl_table=11
/product="cytochrome b/b6 domain-containing protein"
/protein_id="YP_910912.1"
/db_xref="GI:119356268"
/db_xref="InterPro:IPR005797"
/db_xref="InterPro:IPR005798"
/db_xref="GeneID:4569219"
/translation="MAENNQNAATGNTPVKPKPAAPGAAKPAAPGAAKPAAPAAAKPA
APVAAKAQPSTSTGGGVYKPPVDRPDPNPYKDSRLSPLGSWFQERFYVMMPVIDYLKK
KEVPQHRLSFWYYFGGLTLFFFIIQIVTGLLLLQYYKPTAAEAFASFVFIQQEVPFGW
LIRQVHAWSANLMVMMAFIHMFSTFFMKSYRKPRELMWVSGFVLLVLSLGFGFTGYLL
PWNELAFFATQVGTEVPKVAPGGAFLVGILRGGEEVGPETLTRMFSLHVVLLPGLLML
VLSAHLLLVQVLGTSAPIGYKESGMIKGYEKFFPTFLAKDAIGWIIGFGLLVYLAVVF
PWEIGVKAEALTAAPVGIKPEWYFWAQFQLLKDLTFEGGELVAIALLTVGAIVWILVP
FIDRQASSEQKSPLFTIFGLLVLAFLLINTYRVYAEYGW"
misc_feature 475803..476360
/locus_tag="Cpha266_0430"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:207221"
misc_feature 475812..476837
/locus_tag="Cpha266_0430"
/note="Cytochrome b subunit of the bc complex [Energy
production and conversion]; Region: QcrB; COG1290"
/db_xref="CDD:31481"
misc_feature order(475875..475877,475887..475892,475908..475913,
475920..475925,475932..475934,476004..476006,
476049..476051,476058..476063,476070..476075,
476079..476084,476088..476093,476100..476102,
476121..476138,476148..476153,476160..476165,
476172..476174,476181..476186,476214..476216,
476226..476246,476256..476261,476283..476285)
/locus_tag="Cpha266_0430"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature order(475875..475880,475884..475886,475953..475955,
475965..475967,475974..475979,476004..476009,
476016..476021,476028..476042,476046..476054,
476061..476063,476145..476147)
/locus_tag="Cpha266_0430"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature order(475908..475910,475917..475922,475926..475931,
476085..476087,476097..476099,476106..476111,
476115..476117,476157..476162,476169..476174,
476178..476183)
/locus_tag="Cpha266_0430"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(475938..475940,475947..475952,475959..475964,
475968..475973,475980..475982,476013..476015,
476055..476057,476064..476069,476076..476078,
476199..476204,476211..476216,476220..476225)
/locus_tag="Cpha266_0430"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(476184..476186,476193..476198,476205..476210,
476247..476249,476256..476261,476271..476273,
476352..476354)
/locus_tag="Cpha266_0430"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature 476490..476837
/locus_tag="Cpha266_0430"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cl00193"
/db_xref="CDD:206890"
misc_feature order(476490..476492,476502..476504,476511..476516,
476523..476528,476532..476537,476541..476549,
476556..476558,476571..476573,476577..476582,
476586..476600,476607..476615,476622..476624,
476628..476639,476682..476684,476712..476714,
476721..476723,476733..476735,476739..476747,
476751..476753)
/locus_tag="Cpha266_0430"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature order(476490..476492,476514..476516)
/locus_tag="Cpha266_0430"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature order(476496..476504,476508..476513,476520..476522,
476535..476540,476547..476552,476556..476558,
476574..476576,476583..476588,476760..476765,
476775..476780)
/locus_tag="Cpha266_0430"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature order(476622..476624,476628..476633,476640..476642,
476649..476654,476700..476702)
/locus_tag="Cpha266_0430"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene complement(477245..480748)
/locus_tag="Cpha266_0431"
/db_xref="GeneID:4569220"
CDS complement(477245..480748)
/locus_tag="Cpha266_0431"
/note="PFAM: alpha amylase, catalytic region;
SMART: alpha amylase, catalytic sub domain;
KEGG: plt:Plut_1717 alpha amylase, catalytic subdomain"
/codon_start=1
/transl_table=11
/product="alpha amylase"
/protein_id="YP_910913.1"
/db_xref="GI:119356269"
/db_xref="InterPro:IPR006047"
/db_xref="InterPro:IPR006589"
/db_xref="GeneID:4569220"
/translation="MTSNNYQPAPPGKEHFYLNRQARELFKQRDPEFLVLFDRSGDSL
AHAREQTAIINSFLKKKKGDQAKLILPAQFHGMKLLHEVFHALIAQSVASRKPDFFKT
VDDNFHRELSQNRANEYEKRFLDDFPPDALFRGVQSTEEYLSIPEKREQLIEESFLVW
LNNQNPALGQFEDLITDRNLVKDDAYLQLIRSLKGSIHDMGAVGPGDIDLLELLWLPI
RHSPDSILEQLRYIRLHWADLLEDSPFWSLLADAIILIQDEDRYIFVEQLSKHQDSRH
PDFWMEKETHVPDYGDPGEAGAHYSADSSWMPEVVMLAKSTYVWLDQLSKIYHRHIAR
LQDIPDRELDLLSERGFTALWLIGLWQRSEASETIKRIQGNPEAKASAYALEQYNISR
DIGGYEGYLDLRNRAMQRGIRLASDMVPNHTGIDSELVRNNPDWFLSASSAPYVNYSY
NGPNLSSDARYGIFLEDGYWNRSDAAVTFKRVDYLNGDTRYIYHGNDGTTMPWNDTAQ
LDFLSAEVREGVIQQILHVARMFPIIRFDAAMVLAKRHIQRLWYPLHGQTAGVPSRSS
FSMSMEEFNAAIPEEFWREVVDRIQAEVPGTLLLAEAFWMLEGYFVRTLGMHRVYNSA
FMHMLKKEDNASYRYLIKNTLEFDAEILKRYVNFMNNPDEDTAIAQFGRGDKYFGVCM
MMITMPGLPMLGHGQVEGFTEKYGMEYAKAYYDEQPDQHLVDRHYREIFPVMKKRPLF
AEVENFFLYDVYSPEGSVNENIFAYSNRLGEEKALVIFNNCAVQAAGWVSTSVGYRKG
DEIRQTSLADGLFLSREDNLYVIFRDQCSGMEFIRSNRIIAEQGLFVALEGYRYNLFL
DFREVKPSRLTPYDRLCAELNGNGTASIEHDVLFMSLEPLHRLLSEFLAPDNLAPLHG
TTENELIFPVFKTMIATLLQEVAVKYGNLLEKPVDVPATLADETVSRFRHACQMVEEM
ANLPESDRFNAALGTTEREKSGFSTILLHWLALDSLQEMLRANELLSSNLIDDWLMSN
TLQQLYSQKGLNGIPGDNIPDLLYCLLSEKPATLPADEESALYALLALLDASHSEHVA
RILQFENRHEKTWFREHRFSVLAAWLSVEAMLKKENLPVEQESGKTEHPVAGWVAAAR
KLDMQAFLSGYEMGALLRQKA"
misc_feature complement(478529..479803)
/locus_tag="Cpha266_0431"
/note="Alpha amylase catalytic domain family; Region:
AmyAc_family; cl07893"
/db_xref="CDD:208795"
misc_feature complement(<478634..479746)
/locus_tag="Cpha266_0431"
/note="Glycosidases [Carbohydrate transport and
metabolism]; Region: AmyA; COG0366"
/db_xref="CDD:30715"
misc_feature complement(order(478760..478765,478943..478945,
479138..479140,479144..479146,479483..479485))
/locus_tag="Cpha266_0431"
/note="active site"
/db_xref="CDD:200451"
misc_feature complement(order(478760..478762,478943..478945,
479138..479140))
/locus_tag="Cpha266_0431"
/note="catalytic site [active]"
/db_xref="CDD:200451"
gene complement(480951..481340)
/locus_tag="Cpha266_0432"
/db_xref="GeneID:4569221"
CDS complement(480951..481340)
/locus_tag="Cpha266_0432"
/note="KEGG: cch:Cag_0262 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_910914.1"
/db_xref="GI:119356270"
/db_xref="GeneID:4569221"
/translation="MITNNEPLNSIEARIEELHNTIAEKEEQIKTRTRQLKDDIQTEL
DPATVVRRHPFEIAGSIFVTGILIGRSVKSMVGSSRKHQSNTASASDSVPAKAPTQLS
VLGIDILRSVKDLGFTYLTHYLDKKIK"
gene complement(481324..481722)
/locus_tag="Cpha266_0433"
/db_xref="GeneID:4569222"
CDS complement(481324..481722)
/locus_tag="Cpha266_0433"
