LOCUS NC_009049 3147721 bp DNA circular BCT 27-SEP-2012
DEFINITION Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence.
ACCESSION NC_009049
VERSION NC_009049.1 GI:126460778
DBLINK Project: 58449
BioProject: PRJNA58449
KEYWORDS .
SOURCE Rhodobacter sphaeroides ATCC 17029
ORGANISM Rhodobacter sphaeroides ATCC 17029
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
Rhodobacteraceae; Rhodobacter.
REFERENCE 1 (bases 1 to 3147721)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
Donohue,T.J. and Kaplan,S.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Rhodobacter sphaeroides ATCC
17029
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3147721)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3147721)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
Donohue,T.J. and Kaplan,S.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000577.
URL -- http://www.jgi.doe.gov
http://www.rhodobacter.org
JGI Project ID: 4000715
Source DNA and bacteria available from Chris Mackenzie
(Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan
(Samuel.Kaplan@uth.tmc.edu)
Contacts: Samuel Kaplan (samuel.kaplan@uth.tmc.edu)
Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3147721
/organism="Rhodobacter sphaeroides ATCC 17029"
/mol_type="genomic DNA"
/strain="ATCC 17029"
/db_xref="ATCC:17029"
/db_xref="taxon:349101"
/chromosome="1"
gene 36..1346
/locus_tag="Rsph17029_0001"
/db_xref="GeneID:4897090"
CDS 36..1346
/locus_tag="Rsph17029_0001"
/EC_number="3.6.3.15"
/note="KEGG: rsp:RSP_1332 H+-transporting two-sector
ATPase, alpha/beta subunit;
TIGRFAM: ATPase, FliI/YscN family;
PFAM: H+-transporting two-sector ATPase, alpha/beta
subunit, central region;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="FliI/YscN family ATPase"
/protein_id="YP_001041893.1"
/db_xref="GI:126460779"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR005714"
/db_xref="GeneID:4897090"
/translation="MSGEFDGLLAEIAAIPLSRRYGRVTGIGRGTLSVGGLEQGTALG
DRVEICGAGGILGGEVLRLSAHEVTILPDGSPEGLAIGDAVALVGPAEIAPDDSWIGR
IVDPLGRPLDGRPLFRGPRARPLRAAAPAAAARRSLGPRLPTGVAVFDTLLPLVQGQR
IGLFAGSGVGKSSLLAKFARSVVADVVVIGLVGERGRELRDFTERVLGPAGMARAVVV
TATSDQSPLVRRRCGWAAMAVAEHFRDQGLHVLLLVDSITRFAEAHREVALAGGEAAS
MRGFPPSTAHTIMALAERAGPGAEGTGDITAVFSVLVAGSDMEEPVADILRGVLDGHV
VMDRKIAERGRFPAIDLLRSVSRALPEAASTAENALIAEARRLLGAWDRAEMMIQAGL
YARGSDPLVDAAIRVWPALDAFLAEDAPDGIDASFRRLADCLGL"
misc_feature 99..1325
/locus_tag="Rsph17029_0001"
/note="flagellar protein export ATPase FliI; Region:
FliI_clade1; TIGR03496"
/db_xref="CDD:211825"
misc_feature 303..1286
/locus_tag="Rsph17029_0001"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(528..533,543..551)
/locus_tag="Rsph17029_0001"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(531..533,543..551,600..602,606..611,798..803)
/locus_tag="Rsph17029_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 786..800
/locus_tag="Rsph17029_0001"
/note="Walker B motif; other site"
/db_xref="CDD:29986"
gene complement(1350..1673)
/locus_tag="Rsph17029_0002"
/db_xref="GeneID:4895900"
CDS complement(1350..1673)
/locus_tag="Rsph17029_0002"
/note="KEGG: rsp:RSP_1333 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041894.1"
/db_xref="GI:126460780"
/db_xref="GeneID:4895900"
/translation="MVSDPLDSLLDEIRRTVTAGDLAALPNLETRLAEALERLPPDPA
RLIALRRKAEGNLACLAAAARGVRAARRRLEEIRQAASGTVVVYDGHGRLAETRPEVA
PRHRL"
gene complement(1663..1941)
/locus_tag="Rsph17029_0003"
/db_xref="GeneID:4895550"
CDS complement(1663..1941)
/locus_tag="Rsph17029_0003"
/note="KEGG: rsp:RSP_1334 possible chemotactic
signal-response protein CheL"
/codon_start=1
/transl_table=11
/product="putative chemotactic signal-response protein
CheL"
/protein_id="YP_001041895.1"
/db_xref="GI:126460781"
/db_xref="GeneID:4895550"
/translation="MSVTITPKPTLAHDPRPDLRRKAEELEAAFLSEMLGHTGLGSAS
GPFGGGIGEQQFASFLRDEQAAGMVRSGGIGLAEQFYRSLTKGMDDGL"
misc_feature complement(<1681..1920)
/locus_tag="Rsph17029_0003"
/note="Rod binding protein; Region: Rod-binding; cl01626"
/db_xref="CDD:207464"
gene 2045..4264
/locus_tag="Rsph17029_0004"
/db_xref="GeneID:4897817"
CDS 2045..4264
/locus_tag="Rsph17029_0004"
/note="KEGG: rsp:RSP_1335 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041896.1"
/db_xref="GI:126460782"
/db_xref="GeneID:4897817"
/translation="MIIGAIPQAVASPELALKAPAATLAGEAFAAELESSALPEPPPA
EPLTAEAPTSPVPAEDRDADGDASPNEEPVLCVCNPVAPPWQIRVPTSSATEPELPPV
PTTRLPGEDEGAGTLAAPGPAVEADAGLPPKDGDPAPPPDARHRDPPAEPAADAPPGG
GREAGACPSAGLNRLGVAGPETGGAPPPDPDRLSQVSPAQPTPAAPLTVSFAASSGLP
EGKTVNLSSRTAEALPRRDEAAGAKDTAAASVVAAPLPGDRPDKGEDLPSSGAGKILQ
PSANEAVAEFRQTEASPAAPAPTVLRPSPYPAPPVGLASNGRAPALPLAVSPVSSHSE
APVGRVPSGADPAPTAAVPLVSPYPAARLSRVPTGLAPARPPSRVDGLSEQDDAFRAR
VAYIVSMPQARSEPGLNLLPRQGASANMSGSDPTLPNPRGAANGSDVGPPQRQSAHDP
APAVGYDLPAKPEMPLSRHAPLQPKEPQPAHPRAERRPVPPPVPASSEGALPAAQPTA
VAPRDVAIAAPVITVPAAAERGGTKESASAERGGTKAIRHQMASERLAGPGNSASSRP
EPQAAASGETQRQSPETDLAPDLPVAHDPPPSAPVLSEPRVAPDQARTPAHPAPQAPS
RAAAEAQSGEEDAVEVVLQPDELGRVKMTVAHDGGHVRVLVQADRTDTLDMMRRNSGD
LGVEMRQAGFSGASLSFGGREGQPPPRARAALEAESTDVQPPTAATSRSATGLDLRI"
misc_feature 3956..4111
/locus_tag="Rsph17029_0004"
/note="Flagellar hook-length control protein FliK; Region:
Flg_hook; pfam02120"
/db_xref="CDD:202116"
gene 4274..4942
/gene="flgD"
/locus_tag="Rsph17029_0005"
/db_xref="GeneID:4896929"
CDS 4274..4942
/gene="flgD"
/locus_tag="Rsph17029_0005"
/note="acts as a scaffold for the assembly of hook
proteins onto the flagellar basal body rod; Rhodobacter
sphaeroides has 2 copies of many flagellar genes; the
Rhodobacter protein in this cluster is associated with a
set of flagellar genes acquired by lateral gene transfer;
these genes are not normally expressed"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod modification protein"
/protein_id="YP_001041897.1"
/db_xref="GI:126460783"
/db_xref="InterPro:IPR005648"
/db_xref="GeneID:4896929"
/translation="MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQN
QDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE
APAWFDGAPLTLSPKPSEDADRAVLVVRNAAGAVVAQEDIPIGGGQMEWAGTDASGQP
LPKGAYSFTVESYTGDQVTDTSKVGVYAEIIEARGGSSGTLLVMKGGIEVPASAVTAL
RDAS"
misc_feature 4331..4939
/gene="flgD"
/locus_tag="Rsph17029_0005"
/note="flagellar basal body rod modification protein;
Reviewed; Region: flgD; PRK12813"
/db_xref="CDD:183764"
misc_feature <4331..4510
/gene="flgD"
/locus_tag="Rsph17029_0005"
/note="Flagellar hook capping protein - N-terminal region;
Region: FlgD; pfam03963"
/db_xref="CDD:202834"
misc_feature 4586..4798
/gene="flgD"
/locus_tag="Rsph17029_0005"
/note="FlgD Ig-like domain; Region: FlgD_ig; pfam13860"
/db_xref="CDD:206031"
gene complement(4937..6466)
/locus_tag="Rsph17029_0006"
/db_xref="GeneID:4896595"
CDS complement(4937..6466)
/locus_tag="Rsph17029_0006"
/note="TIGRFAM: 2-polyprenylphenol 6-hydroxylase;
PFAM: ABC-1 domain protein;
KEGG: rsp:RSP_1337 probable ubiquinone biosynthesis
protein"
/codon_start=1
/transl_table=11
/product="2-polyprenylphenol 6-hydroxylase"
/protein_id="YP_001041898.1"
/db_xref="GI:126460784"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR004147"
/db_xref="InterPro:IPR010232"
/db_xref="GeneID:4896595"
/translation="MRGPHNIWRLVRTAATMERTGAIGAVLEAMDAPANLRVVARVLG
WPFKWLGLPGDPALPPATRALTALGPAYIKFGQILSTRPDVVGPEMALQLQYLQDKLP
PFPTSVAKALIEEELHLPVDRVFSEFSEPVAAASIAQVHRARLADTGVEVAVKVLRPG
IERAFRTDIDAFYLAAQIIELLSPSSRRLRPTEVIRHFEGVVNGELDLRLESASAGEF
AVNTEADAGFQVPKPVWNLSARQVMTIGWAEGLSLADNPALDAAGHNRTELGTRVLSL
FLSHALRDGFFHADMHQGNLKVAANGDIIAYDFGIMGRLDEYTRRVYAEIIFGFIQRD
YRRVAEVHFEAGYVPADRDIDEFARALRAVGEPIFGMDASRISMARLLAYLFEVTERF
GMETRTELILLQRTMVVVEGVARSLDPHINIWQVARPIVEDYIRDNVGPKAVARDLLR
TARILGRFGPRLPRLVEARLIRQGHPEVEEPPRRETHPMVWMLAGAGLTAAGVWIGSL
L"
misc_feature complement(5132..6448)
/locus_tag="Rsph17029_0006"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(4940..6253)
/locus_tag="Rsph17029_0006"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
gene complement(6468..7220)
/locus_tag="Rsph17029_0007"
/db_xref="GeneID:4896098"
CDS complement(6468..7220)
/locus_tag="Rsph17029_0007"
/note="TIGRFAM: ubiquinone/menaquinone biosynthesis
methyltransferases;
PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type
11; Methyltransferase type 12;
KEGG: rsp:RSP_1338 methyltransferase"
/codon_start=1
/transl_table=11
/product="UDP-3-O-(3-hydroxymyristoyl) glucosamine
N-acyltransferase LpxD"
/protein_id="YP_001041899.1"
/db_xref="GI:126460785"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:4896098"
/translation="MSDETSNTTHFGFRTVPEGEKAGMVHGVFTRVASKYDIMNDLMS
GGVHRLWKDAMMDWLAPRPGQKLLDVAGGTGDISFRFLKRAPGAEATVCDMTESMLVE
GRQRADAAQMADRLDWVVGDAMALPFASNTFDVYTISFGIRNVTRVQDALNEAYRVLK
PGGRLMVLEFSQLPNPMMQWAYDRYSFNVIPVMGQIVANDRDSYQYLVESIRKFPDQE
TFADMIRKAGFGLVKYRNLSLGIAALHSGWKI"
misc_feature complement(6474..7148)
/locus_tag="Rsph17029_0007"
/note="ubiE/COQ5 methyltransferase family; Region:
Ubie_methyltran; pfam01209"
/db_xref="CDD:110227"
misc_feature complement(6720..7025)
/locus_tag="Rsph17029_0007"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(6807..6809,6852..6860,6936..6941,
6993..7013))
/locus_tag="Rsph17029_0007"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature complement(6501..6875)
/locus_tag="Rsph17029_0007"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:214256"
gene 7314..8165
/locus_tag="Rsph17029_0008"
/db_xref="GeneID:4896879"
CDS 7314..8165
/locus_tag="Rsph17029_0008"
/EC_number="3.2.2.23"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="YP_001041900.1"
/db_xref="GI:126460786"
/db_xref="InterPro:IPR000191"
/db_xref="InterPro:IPR000214"
/db_xref="InterPro:IPR012319"
/db_xref="GeneID:4896879"
/translation="MPELPEVETVRRGLEPAMAGRLIAEARVNRADLRWPFPPRMAER
LTGQRVLRLRRRSKYILADLSGGQSLLIHLGMSGRMLVSGAQLGEFFHGHPAPSRHDH
VVLEMEGGARITFNDARRFGAMDLVATEAAEAHPLLAVLGPEPLGNAFDGAYLAARLE
GRRTPIKAALLDQRIVAGLGNIYVCEVLFRAGLAPGRLAGSLSRAEAEGLVPLIREVL
LEAIEAGGSSLRDYRQADGELGYFQHTFRVYGREGLPCVTPGCSGTVGRIVQSGRSSF
HCPLCQR"
misc_feature 7314..8162
/locus_tag="Rsph17029_0008"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 7317..7697
/locus_tag="Rsph17029_0008"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(7317..7322,7485..7487,7530..7532,7536..7544,
7608..7613,7665..7676)
/locus_tag="Rsph17029_0008"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 7317..7319
/locus_tag="Rsph17029_0008"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(7320..7331,7335..7340,7347..7349,7476..7487,
7542..7544)
/locus_tag="Rsph17029_0008"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(7320..7322,7485..7487)
/locus_tag="Rsph17029_0008"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 7530..7532
/locus_tag="Rsph17029_0008"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(7539..7541,7668..7670,7674..7676)
/locus_tag="Rsph17029_0008"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 7542..7544
/locus_tag="Rsph17029_0008"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(7611..7613,7671..7673)
/locus_tag="Rsph17029_0008"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 7734..8012
/locus_tag="Rsph17029_0008"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
gene 8226..9002
/locus_tag="Rsph17029_0009"
/db_xref="GeneID:4897673"
CDS 8226..9002
/locus_tag="Rsph17029_0009"
/note="PFAM: Enoyl-CoA hydratase/isomerase;
KEGG: rsp:RSP_1340 enoyl-CoA hydratase/isomerase"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase/isomerase"
/protein_id="YP_001041901.1"
/db_xref="GI:126460787"
/db_xref="InterPro:IPR001753"
/db_xref="GeneID:4897673"
/translation="MAYETLIVEIEDYVALIRLNRPDALNALNSKMMSELADALGAAD
RNEKVRCIVLTGSEKAFAAGADIKEMAEQSFVDVFGSDFFTSDSEAMLRVRKPIVAAV
AGYALGGGCELAMMCDFIIAADTAKFGQPEINLGVVAGLGGTQRLTRFVGKSKSMDMH
LTGRFMDAAEAERCGLVSRVVPAKNLMEEAMKAASKISEKSLLTAMAVKEAVNRSYET
TLREGVLFERRLFHALFATEDQKEGMAAFLEKRTPQFRDK"
misc_feature 8226..8999
/locus_tag="Rsph17029_0009"
/note="enoyl-CoA hydratase; Provisional; Region: PRK05862"
/db_xref="CDD:180295"
misc_feature 8241..8816
/locus_tag="Rsph17029_0009"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature order(8298..8300,8304..8306,8400..8402,8412..8426,
8538..8540,8544..8552,8616..8621,8628..8630)
/locus_tag="Rsph17029_0009"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature order(8418..8420,8550..8552)
/locus_tag="Rsph17029_0009"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature order(8514..8516,8577..8588,8622..8633,8649..8651,
8655..8663,8667..8672,8685..8690,8694..8699,8703..8708,
8715..8717,8748..8750,8757..8759,8802..8804,8811..8816)
/locus_tag="Rsph17029_0009"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene 9113..9391
/gene="rpsT"
/locus_tag="Rsph17029_0010"
/db_xref="GeneID:4895437"
CDS 9113..9391
/gene="rpsT"
/locus_tag="Rsph17029_0010"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_001041902.1"
/db_xref="GI:126460788"
/db_xref="InterPro:IPR002583"
/db_xref="GeneID:4895437"
/translation="MANSPQSKKRARQAEARAAVNKARRSRIRTFLRKVEEAIATGDA
SVAAAALKTAQPELARGVTKGVLHKNTVARKMSRLAHRVKVLSQPAAA"
misc_feature 9113..9376
/gene="rpsT"
/locus_tag="Rsph17029_0010"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 9930..11297
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/db_xref="GeneID:4895599"
CDS 9930..11297
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_001041903.1"
/db_xref="GI:126460789"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4895599"
/translation="MTNETWVQVREGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVP
TLFFGDWVQRNFADHIRMRLTEAGSPVERLEFAVSNTPRAPLKEVKAAAPAASPARAR
PAPPEEDLRGAPLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLG
KTHLMHAIAHDLQKRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVD
DVQFIAGKDSTQEEFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVD
LHPTDYELRLGILQQKADFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAF
ASLVGREITLDLAQDCLADILRASDRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIA
RPRQVAMYLAKQLTPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQLADDLQLLR
RLLQA"
misc_feature 9930..11252
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 9936..10127
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 10317..10748
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 10392..10415
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(10395..10418,10581..10583,10680..10682)
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 10569..10586
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 10719..10721
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 11019..11252
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(11088..11090,11112..11117,11136..11138,11154..11162,
11187..11201,11208..11210,11217..11222)
/gene="dnaA"
/locus_tag="Rsph17029_0011"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 11415..12533
/locus_tag="Rsph17029_0012"
/db_xref="GeneID:4896445"
CDS 11415..12533
/locus_tag="Rsph17029_0012"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_001041904.1"
/db_xref="GI:126460790"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4896445"
/translation="MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSF
RATDLDIEVVDRTPAVVERAGATTVSAVMLHEIVRKLPDGALVGLSEDPASGRLTVTA
GRSVFSLATLPREDFPVMASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVY
MHVATGEEGPVLRCVATDGHRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEV
EIAVSVSETKVRFATPQITMTSKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRV
ATVSSERSRAVKLSLDEDRLVLSVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEIA
SQVDRENAVFLFNSSGDPTLMREGNDMSAVYVVMPMRV"
misc_feature 11415..12530
/locus_tag="Rsph17029_0012"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 11415..12527
/locus_tag="Rsph17029_0012"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(11484..11486,11628..11630,11649..11651,12024..12026)
/locus_tag="Rsph17029_0012"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(11631..11633,11640..11642,11724..11726,11730..11732,
12246..12248,12339..12344)
/locus_tag="Rsph17029_0012"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(11943..11945,11949..11960,12390..12392,12516..12527)
/locus_tag="Rsph17029_0012"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(11943..11945,11949..11954,12171..12173,12276..12278,
12315..12320,12399..12401,12516..12527)
/locus_tag="Rsph17029_0012"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 12601..13692
/gene="recF"
/locus_tag="Rsph17029_0013"
/db_xref="GeneID:4895478"
CDS 12601..13692
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001041905.1"
/db_xref="GI:126460791"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4895478"
/translation="MRGLAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLE
AISLLSPGRGLRRAAADEIARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRID
GKAATQVMLGRLLRIVWLVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKA
MRERNRLLKEQVADAHWHGALEGRMAEAARAIRAHREEAVARLMAAQGAAETAFPRAV
LSVASDDPEDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKA
LLISLILANARALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGP
ELFTALGYRAQRIEVTEAQGLSQTRDIGP"
misc_feature 12613..13659
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 12616..>13107
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 12697..12720
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(12706..12711,12715..12723,12964..12966)
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 12955..12966
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <13333..13641
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 13405..13434
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 13492..13509
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 13516..13527
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 13585..13605
/gene="recF"
/locus_tag="Rsph17029_0013"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 13689..14111
/locus_tag="Rsph17029_0014"
/db_xref="GeneID:4896499"
CDS 13689..14111
/locus_tag="Rsph17029_0014"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: rsp:RSP_1345 hypothetical protein"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_001041906.1"
/db_xref="GI:126460792"
/db_xref="InterPro:IPR004360"
/db_xref="GeneID:4896499"
/translation="MTPQRITLVTLGVADLATSVAFYEKLGWKQHRAQEGVAFFQLQG
SALALFGRADLAADQGRPEAALGTGAVTLAQNFPTEAEVDAAFEAALAAGATAIKRPE
KVVWGGYSGYWADPDGHVWEMAMNPVWPLAEDGSLTLP"
misc_feature 13701..14057
/locus_tag="Rsph17029_0014"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature 13710..14066
/locus_tag="Rsph17029_0014"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_10; cd07251"
/db_xref="CDD:211351"
gene 14203..16638
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/db_xref="GeneID:4898002"
CDS 14203..16638
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/EC_number="5.99.1.3"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_001041907.1"
/db_xref="GI:126460793"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:4898002"
/translation="MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHH
MVYEVVDNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMT
QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHL
RVVRDAPGEKGTEVRFLASAKTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLE
DERPAEPLHSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSY
HETVLPFTNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLT
CVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEA
ALAREAARKAREMTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGR
ARKNQAVLPLRGKILNVERARFDRMLSSETVGTLITALGAGIGRDEFDIAKLRYHKII
IMTDADVDGAHIRTLLLTFFFRQMPAIIEGGFLYIAQPPLYKVARGKSEVYLKDQAAL
DDYLIHQGIEGAILRLATGEEIAGQDLLRVIEGARQFRRVLDGFPTHYPRNILEQAAL
SGAFDPGRADDDLQLVADRVAERLDLTAAEYERGWKGRITQDHGIRLSRVLRGVEELR
TLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKDREQPIHGPIALLKAVLAEGEKG
LSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAEADDIFTKLMGDVVEPRREF
IQQNALNVENLDT"
misc_feature 14224..16632
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 14326..>14472
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 14356..14358
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(14443..14445,14449..14451)
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 14902..15375
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 15055..15057
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(15229..15231,15238..15243,15247..15249)
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(15247..15249,15253..15255)
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 15496..15840
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(15514..15519,15526..15528,15736..15738,15742..15744,
15748..15750)
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(15514..15516,15736..15738)
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 16408..16602
/gene="gyrB"
/locus_tag="Rsph17029_0015"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(16595..17884)
/locus_tag="Rsph17029_0016"
/db_xref="GeneID:4897044"
CDS complement(16595..17884)
/locus_tag="Rsph17029_0016"
/note="KEGG: rsp:RSP_1348 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041908.1"
/db_xref="GI:126460794"
/db_xref="GeneID:4897044"
/translation="MSPIRLRILWSRIRRTLWFTPALYAVIALLVLSTAPLAGRMLPS
DVNSLIGLDGVYDLLDVLSNSLLAVSIFSLGIMASSLQAAAGAATPRARPLLTEDRTA
QNAISTFLGGFIYGIVGLVGLSTNYYGDEAKVILFLVTCAVIMAVIVALIRWVGRLSN
LGDVSEVIDLVEQAADRAFAADAAEPWLGGVSMTELPEGRSAVLPDRMGFVQAINVAE
LARLADEWEIDLYVAARPGAYADPNRPLLLAGQRLDTEQVVLARACFVIGGQRTFEAD
PRFAMIVLSETASRALSPGVNDPGTAIDVIGTSSRVLADWAKALEKAKGEVRHRRLHV
GRLSPEDVLEDAFRWIARDGAGQLEVQIRLQRALAALSTCAPQLFGHPARALSEETLL
RAEQALTFDRDLDRLRAEAARLGFRCPDSPRSARSAG"
misc_feature complement(16772..17833)
/locus_tag="Rsph17029_0016"
/note="Predicted membrane protein (DUF2254); Region:
DUF2254; pfam10011"
/db_xref="CDD:150659"
gene 17974..19050
/locus_tag="Rsph17029_0017"
/db_xref="GeneID:4896319"
CDS 17974..19050
/locus_tag="Rsph17029_0017"
/note="PFAM: AFG1-family ATPase;
KEGG: rsp:RSP_1349 hypothetical protein"
/codon_start=1
/transl_table=11
/product="AFG1 family ATPase"
/protein_id="YP_001041909.1"
/db_xref="GI:126460795"
/db_xref="InterPro:IPR005654"
/db_xref="GeneID:4896319"
/translation="MRKSLTDIYEARVDAEELRADPAQHAVLEDLEGIRQWLEAHPER
KRGLFGLFAAKEELPKGLYLWGGVGRGKSMIMDLFTEAVEIPMKRRVHFHAFMQEVQQ
GMHEARKKGVEDALQPVADRVAGQVRLLAFDEMQITDITDAMVVGRLFQKLFEQGVVI
VTTSNRPPEGLYENGLNREVFLPFIDLLRERMTVIELESPTDYRQHRLQGAQVFFHPA
RKAEQAIARIWSDLTGGDRGHPMRLPVNGRTVEIPRFANGVGRATFWDLCARPLGPAD
FLAIAEACRVLILEDIPRLSAENYNEAKRFVTLIDALYEARVRLIASAADEPERLYIE
GEGSFEFERTASRLREMQSADWAT"
misc_feature 17980..19047
/locus_tag="Rsph17029_0017"
/note="Predicted ATPase [General function prediction
only]; Region: COG1485"
/db_xref="CDD:31674"
gene complement(19254..20129)
/locus_tag="Rsph17029_0018"
/db_xref="GeneID:4895378"
CDS complement(19254..20129)
/locus_tag="Rsph17029_0018"
/EC_number="3.1.3.3"
/note="KEGG: rsp:RSP_1350 phosphoserine phosphatase;
TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily
hydrolase, subfamily IB (PSPase-like);
PFAM: Haloacid dehalogenase domain protein hydrolase"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase SerB"
/protein_id="YP_001041910.1"
/db_xref="GI:126460796"
/db_xref="InterPro:IPR004469"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006383"
/db_xref="GeneID:4895378"
/translation="MFVAVLMTDPAAPGLERTTVESLRNAWGGGDARWLQPGVAAEFP
VSAMPSNRWQVWEDLQALKVDLAVVPAEGRRKKLLLADMDSTMIRQECIDELADEAGV
GEYVAGITRRAMNGELNFESALRERVGLLKGLSASVVDRVFETRIQYMPGGRALVQTM
KAHGARAALVSGGFTAFTEKVAAGLGFDEHRANILHVAEGALTGTVAEPILGREAKLA
ALEEICARLGIEVADAMAVGDGANDLGMLKRAGAGVALHAKPVVAAECDIRINHGDLT
SLLFVQGYAEDEIRA"
misc_feature complement(19293..19910)
/locus_tag="Rsph17029_0018"
/note="phosphoserine phosphatase SerB; Region: serB;
TIGR00338"
/db_xref="CDD:161826"
misc_feature complement(19365..19679)
/locus_tag="Rsph17029_0018"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(19617..19619)
/locus_tag="Rsph17029_0018"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 20269..21426
/locus_tag="Rsph17029_0019"
/db_xref="GeneID:4896956"
CDS 20269..21426
/locus_tag="Rsph17029_0019"
/EC_number="2.6.1.52"
/note="catalyzes the formation of 3-phosphonooxypyruvate
and glutamate from O-phospho-L-serine and 2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="phosphoserine aminotransferase"
/protein_id="YP_001041911.1"
/db_xref="GI:126460797"
/db_xref="InterPro:IPR000192"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR006271"
/db_xref="GeneID:4896956"
/translation="MSDLQTPAARPANPRFSSGPCAKIPAYSLDLLSDAPLGRSHRAA
VGKAKLKEAIDLTREILGVPEGYRIGIVPGSDTGAVEMAMWSLLGARPVEMLAWESFG
EGWVTDAVKQLKLDATVRKAAYGEIVDLAQVDFTRDVVFTWNGTTSGVRLPDGDAIPA
DREGLTICDATSAAFAMDLPWDKLDVVTFSWQKVLGGEGGHGMLILSPRAVERLESYT
PAWPMPKIFRMTKGGKLIEGIFQGETINTPSMLAVEDYLVSLKWAQRIGGLKALVARA
EANSKVVADFVAAHDWIANLAVDPATASTTSVCLKFTDPRIADGAAFAKAVAKRLEKE
GVALDVGAYRDAPAGLRIWCGSTVETADVAALMPWIEWAFEAEIAALAKAA"
misc_feature 20413..20886
/locus_tag="Rsph17029_0019"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cd01494"
/db_xref="CDD:99742"
misc_feature order(20494..20499,20506..20508,20692..20694,20773..20775,
20782..20784,20836..20838,20845..20847)
/locus_tag="Rsph17029_0019"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 20845..20847
/locus_tag="Rsph17029_0019"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 21507..23102
/locus_tag="Rsph17029_0020"
/db_xref="GeneID:4897010"
CDS 21507..23102
/locus_tag="Rsph17029_0020"
/note="catalyzes the formation of 3-phosphonooxypyruvate
from 3-phospho-D-glycerate in serine biosynthesis; can
also reduce alpha ketoglutarate to form
2-hydroxyglutarate"
/codon_start=1
/transl_table=11
/product="D-3-phosphoglycerate dehydrogenase"
/protein_id="YP_001041912.1"
/db_xref="GI:126460798"
/db_xref="InterPro:IPR006139"
/db_xref="InterPro:IPR006140"
/db_xref="InterPro:IPR006236"
/db_xref="GeneID:4897010"
/translation="MAPRVLVSDELSETAVQIFRDRGVEVDYMPKLGKDKEKLAEIIG
QYDGLAIRSATKVTEKLLEQATNLKVIGRAGIGVDNVDIPAASRKGVIVMNTPFGNSI
TTAEHAIAMMFACARQLPEANASTHAGKWEKSRFMGVELFNKTLGVIGAGNIGGIVCD
RALGLSMKVVAYDPFLSEERAKALGVTKVELDDLLARADFITLHVPLTDKTRNILSAE
AIAKTKKGVRIINCARGGLVDEKALAEAIKSGHVAGAAFDVFEVEPASESPLFNLPNV
VVTPHLGASTTEAQENVALQVAEQMSDYLLTGAVQNALNMPSVTAEEAAVMGPWVKLA
GHLGAFVGQMTDEPIKAINVLYDGAVGEMNLAALNCATIAGIMKATNPDVNLVSAPVV
AKERGIQISTTTQAKSGAFDAYIKLTVVTDKRERSVAGTCFSDGKPRFIQIKGINIDA
EVGRHMLYTTNEDVPGIIGLLGMTMGKNGVNIANFTLGRTSVGQEAIAILYLDQAIDP
KVVETLESTGLFQQVKPLEFDVA"
misc_feature 21513..23090
/locus_tag="Rsph17029_0020"
/note="D-3-phosphoglycerate dehydrogenase; Provisional;
Region: PRK13581"
/db_xref="CDD:184162"
misc_feature 21831..22355
/locus_tag="Rsph17029_0020"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
misc_feature 22872..23090
/locus_tag="Rsph17029_0020"
/note="C-terminal ACT (regulatory) domain of
D-3-phosphoglycerate dehydrogenase (3PGDH); Region:
ACT_3PGDH-xct; cd04902"
/db_xref="CDD:153174"
misc_feature order(22887..22889,22893..22895,22947..22949)
/locus_tag="Rsph17029_0020"
/note="putative L-serine binding site [chemical binding];
other site"
/db_xref="CDD:153174"
gene 23199..23930
/locus_tag="Rsph17029_0021"
/db_xref="GeneID:4896215"
CDS 23199..23930
/locus_tag="Rsph17029_0021"
/note="PFAM: metallophosphoesterase;
KEGG: rsp:RSP_1353 putative protein phosphatase"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_001041913.1"
/db_xref="GI:126460799"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:4896215"
/translation="MRSYAIGDIHGHLSLLQEIHGRIAADRERTGDDEAPVVHIGDLV
DRGPDSRGVVEYLRQGIEQGENWVVLKGNHDRMFAGFLRDPDHQDPGLRGDLSWLHPR
LGGGPTLESYGVAHAADRPVAIVHREAVALVPAEHVAFIEALPAFYRRDEALFVHAGI
RPGVPLAEQIEDDLVWIREPFLSDPRDHGMLVVHGHTAIDAVTHYGNRLNLDSGAAYG
GPLSAVVIEGRSVWQLGPEGRRPIA"
misc_feature 23208..23876
/locus_tag="Rsph17029_0021"
/note="phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase domain;
Region: MPP_PPP_family; cd00144"
/db_xref="CDD:163613"
misc_feature 23211..23789
/locus_tag="Rsph17029_0021"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature order(23220..23222,23226..23228,23322..23324,23334..23336,
23415..23420,23667..23669,23724..23726,23784..23786)
/locus_tag="Rsph17029_0021"
/note="active site"
/db_xref="CDD:163613"
misc_feature order(23220..23222,23226..23228,23322..23324,23415..23417,
23667..23669,23784..23786)
/locus_tag="Rsph17029_0021"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163613"
gene 23980..25182
/locus_tag="Rsph17029_0022"
/db_xref="GeneID:4896836"
CDS 23980..25182
/locus_tag="Rsph17029_0022"
/EC_number="2.3.1.9"
/note="catalyzes the formation of beta-ketovaleryl-CoA
from acetyl-CoA and propionyl-CoA"
/codon_start=1
/transl_table=11
/product="beta-ketothiolase"
/protein_id="YP_001041914.1"
/db_xref="GI:126460800"
/db_xref="InterPro:IPR002155"
/db_xref="GeneID:4896836"
/translation="MVRPSREKGRAMSDILVLSAVRTAIGGFGGALAAVPPGDLATTV
TRAALERAGVEPGRVGHVVFGHVINTEPRDMYLSRVAAMQAGIPSEVPAMNVNRLCGS
GVQAIVSAMQALMLGDAEVALAGGAESMSRAPYALTTARWGQKMGDTRALDMMTGALN
CPFGTGHMGITAEIVAERHGISREDQDAFALESQTRTARAQEEGRFDGQIVPVEIASR
KGPVSFSRDEHPKATTLEALAGLRPAFQKGGTVTAGNASGINDGAGALILAREGAVPG
ARPLGRLIGYAHAGVDPEVMGLGPIPAVQALCARTGLSVADFDVIESNEAFAAQALAV
ARALDFDPARVNPNGGAIALGHPVGATGAIITVKALHELHRTGGRRALVTMCIGGGQG
IALALERV"
misc_feature 24010..25179
/locus_tag="Rsph17029_0022"
/note="beta-ketothiolase; Provisional; Region: PRK09051"
/db_xref="CDD:181625"
misc_feature 24028..25176
/locus_tag="Rsph17029_0022"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature order(24079..24081,24160..24162,24205..24207,24214..24216,
24226..24228,24259..24270,24292..24294,24313..24318,
24325..24327,24370..24372,24835..24837,24841..24843,
24847..24849,24907..24909,25144..25149)
/locus_tag="Rsph17029_0022"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature order(24277..24279,25045..25047,25135..25137)
/locus_tag="Rsph17029_0022"
/note="active site"
/db_xref="CDD:29411"
gene complement(25192..27216)
/locus_tag="Rsph17029_0023"
/db_xref="GeneID:4898084"
CDS complement(25192..27216)
/locus_tag="Rsph17029_0023"
/EC_number="2.4.1.129"
/note="KEGG: rsp:RSP_1355 glycosyl transferase, family 51;
TIGRFAM: penicillin-binding protein 1C;
PFAM: glycosyl transferase, family 51; penicillin-binding
protein, transpeptidase; Penicillin-binding domain
protein"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 1C"
/protein_id="YP_001041915.1"
/db_xref="GI:126460801"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR009647"
/db_xref="InterPro:IPR011815"
/db_xref="GeneID:4898084"
/translation="MIRARWLFAAAAGLFLAAAARDGGEGFIAATVMPPLALQTSVEV
EARDGTLLRAYTVADGRWRLEPGPVDPLFLKMLVAYEDGRFYDHGGIDPLALTRAVLQ
ALRYGQVVSGGSTLTMQVARLLEESGTGRVAGKLRQMRVALALERRLSKQEILSLYLR
LAPYGGNLEGIRAASISYLGKEPARLTAAEAALLVAIPQSPEGRRPDRHPERAEAARA
RVLARAVRAEVIEPDRAEAALREPVPRARKPFPAVAPHLADRVAKADPLRQTHRLTLD
AALQKRLETLAAETVEARGERLQVAMLVADHRSGEILASVGSAAYRADRRQGFLDMTV
ALRSPGSLLKPLIYGLAFDEGLAHPETLLDDRPMDFAGYRPQNFDRIFRGEIRAREAL
QMSLNLPAVALTDALGPARLLSALEQAGVKPVLPGGQPGLAVALGGVGVTLSDMVQLY
AALARGGVVLPLHVEGEGAPGRRLMSEVSAWQVADILSGMAPPPGAPANRLAYKTGTS
YGHRDAWAVGFDGQHVVGIWLGRADGTPVPGVFGADLAAPVLFRAFARLKPALESLPP
PPRAALTVSNAELPQPLRRFRSRLAAFQTVGGPQVAFPPDGAEVERLRGGLKVKVEGG
TAPFTWLANGAPVAVSLGGRETLLDLPAGFLTLSVIDADGRSARTAVRLR"
misc_feature complement(25198..27117)
/locus_tag="Rsph17029_0023"
/note="Membrane carboxypeptidase/penicillin-binding
protein PbpC [Cell envelope biogenesis, outer membrane];
Region: PbpC; COG4953"
/db_xref="CDD:34561"
misc_feature complement(26587..27075)
/locus_tag="Rsph17029_0023"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(25567..26310)
/locus_tag="Rsph17029_0023"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature complement(25204..25452)
/locus_tag="Rsph17029_0023"
/note="Penicillin-Binding Protein C-terminus Family;
Region: BiPBP_C; pfam06832"
/db_xref="CDD:203528"
gene complement(27213..32639)
/locus_tag="Rsph17029_0024"
/db_xref="GeneID:4897787"
CDS complement(27213..32639)
/locus_tag="Rsph17029_0024"
/note="PFAM: alpha-2-macroglobulin domain protein; N/apple
PAN domain protein; alpha-2-macroglobulin domain protein
2;
SMART: Apple;
KEGG: rsp:RSP_1356 hypothetical protein"
/codon_start=1
/transl_table=11
/product="alpha-2-macroglobulin domain-containing protein"
/protein_id="YP_001041916.1"
/db_xref="GI:126460802"
/db_xref="InterPro:IPR000177"
/db_xref="InterPro:IPR002890"
/db_xref="InterPro:IPR003014"
/db_xref="InterPro:IPR003609"
/db_xref="InterPro:IPR011625"
/db_xref="GeneID:4897787"
/translation="MRIRHLLPVLMLGLMLPLTAAAQDWLPDRRVVLSADTDLPGSDM
ATLLDTTLDGCERACLSRTGCTAFTFNGRNGSCFPKSTSGDAAPYQGAISGVVVPEDP
ARQETARARASDLAFLSDYDLTRAKEQAAGLGHEHTVNGYTAEEHLQSAARAEAQGDR
IAAANFTGAAVSASDRAESWIDYARRLRAAGEADSSSRDTLRDRAFRAAINGYLRAGS
PALRHTALVELALSAEAIDRGRDMVQALRLAQSIQPRDDTARLLDTAAGKYGFRITEN
AVEADRVRPRICVTFSEKLADSGIDYASYVQLGEPGLTVEAEDRRICVGGVAHGARHV
LTFREGLPAADGQTLAKSVQIAAYVRDRSPSVRFPSRAYVLPRAGAPAIPVETVNART
LDLAVYRVSDRNLLRAIQQDYLGRPLDQWQADQFTSEVGEEIWTGTGEVAMEVNRDMT
TRLPMEEPLRGLPAGIYALKAAIPGQDVYEHPAAWQWFVISDLGVTTLSGTDGLHVFV
RSLGSAEPKTGVTVELLSRANAVLGTATTDDQGLAAFDAGLTRGTGAAEPALVVVKEG
EADIAFLSLTDPEFDLSDRGVEGHEPAPPVDVFLATERGAYRAGETIHALALARDGEA
AAIEGLPLTAILKRPDGVEYSRALASGTGAGGHVFDLPLAGSAPRGVWRLEVLADLEA
APLAAKTVLVEDFLPERIDVTASLPEAPIALGDVPELTVEANFLYGAPGADLAIEGEV
LLRAAEGLPKFPGYVFGRSTASFDPQVASFGGQRTDEAGQARFALDLPQVEDPARPLE
ILVATRVSEGSGRPVERTITRRLRPAEPMIGIRPLFDGVAAQGTDARFALVGVGPEET
PVPMSVRWTLNRIETDYQWYQQWGNWAWEPVETRTPVAEGEAELGTSPVEIGAPVDWG
QYELVVERSDGRQAASSTSFYAGWYAPADVTATPDTLELSLDKPAYRPGETAQLRIVP
RAPGKALVTVLSNRLIAMKAVEVGEGETLVELPVTDEWGTGVYVTATLLRPMDVAAGR
NPTRALGLAHAAIDPGEKKLATRIETAPEAAPRAPLEVAVKVEGTAPGETAYATLAAV
DVGILNLTGFETPDPEDHYFGQRKLGVGIRDLYGRLIDGMNGAQGSVRSGGDGGRAQT
QAPPPTEELVAFFSGPVEVGPDGLARASFDLPAFNGTVRVMAVVWSKTGVGHAEQDVL
VRDPVVVTASLPRFLAPGDESRLLLEIAHATGPFGRVSLDVSSPGLTVGSVPSGLDLS
EKGRARIEVPVSANRTGLQEIEVSLTTPDGKQLTKRLVVPVEVNDPEIARRDRLTLEG
GQTFTLDENLFAGFVPGTGRTTMAIGPIARLDTAGLLASLDRYPYGCTEQITSRALPL
LYLSSVARALDLPGTEDMSVRIGQAIDEVLTNQTAEGAFGLWQAQSGDFWLDAYVTDF
LSRAKAQGHKVPELALRRALDNLRNQVNYSADFDEGGEALAYALMVLAREGAAAIGDL
RYYADVKADAFSTPAAQAQLGAALASYGDQQRADAMFRKAAARLNGSLVAQSQQVFRA
DYGTAYRDAATVLTLAAEAGSQAVDREAVTTSLAARTGTLSTQEAVWTLLATNALIDR
PDLEGIAIDGTPATGPLVRLLRDGDPAVAVTNSGGPQVLTVTTTGVPSEPEPAGGNGY
AIARSYYTMEGEAADPASVGAGTRLVAVLEVTPFGNGEGRLMVNDPLPAGFEIDNPNL
MRGGQVDALDWLSPVENVAHAEFRQDRFLAALDRYDGEAFRLAYIVRAVSPGTFHHPA
ASVEDMYRPEFRAWTEAGRVTVTP"
misc_feature complement(32346..32564)
/locus_tag="Rsph17029_0024"
/note="Subfamily of PAN/APPLE-like domains; present in
plasma prekallikrein/coagulation factor XI, microneme
antigen proteins, and a few prokaryotic proteins.
PAN/APPLE domains fulfill diverse biological functions by
mediating protein-protein or...; Region:
APPLE_Factor_XI_like; cd01100"
/db_xref="CDD:29034"
misc_feature complement(order(32466..32468,32499..32501,32505..32507))
/locus_tag="Rsph17029_0024"
/note="putative binding site; other site"
/db_xref="CDD:29034"
misc_feature complement(27216..31688)
/locus_tag="Rsph17029_0024"
/note="Large extracellular alpha-helical protein [General
function prediction only]; Region: COG2373"
/db_xref="CDD:32520"
misc_feature complement(30564..30851)
/locus_tag="Rsph17029_0024"
/note="MG2 domain; Region: A2M_N; pfam01835"
/db_xref="CDD:202001"
misc_feature complement(<28968..29174)
/locus_tag="Rsph17029_0024"
/note="Alpha-2-macroglobulin family; Region: A2M;
pfam00207"
/db_xref="CDD:201082"
misc_feature complement(27819..28583)
/locus_tag="Rsph17029_0024"
/note="Proteins similar to alpha2-macroglobulin (alpha
(2)-M). Alpha (2)-M is a major carrier protein in serum.
It is a broadly specific proteinase inhibitor. The
structural thioester of alpha (2)-M, is involved in the
immobilization and entrapment of...; Region: A2M_like;
cd02891"
/db_xref="CDD:29790"
misc_feature complement(order(27867..27869,28218..28220,28371..28373,
28380..28382,28410..28412,28521..28523,28530..28535,
28539..28541))
/locus_tag="Rsph17029_0024"
/note="surface patch; other site"
/db_xref="CDD:29790"
misc_feature complement(28530..28541)
/locus_tag="Rsph17029_0024"
/note="thioester region; other site"
/db_xref="CDD:29790"
misc_feature complement(order(28233..28235,28239..28241,28251..28253))
/locus_tag="Rsph17029_0024"
/note="specificity defining residues; other site"
/db_xref="CDD:29790"
gene 32793..35342
/locus_tag="Rsph17029_0025"
/db_xref="GeneID:4896619"
CDS 32793..35342
/locus_tag="Rsph17029_0025"
/note="PFAM: response regulator receiver; ATP-binding
region, ATPase domain protein domain protein; histidine
kinase A domain protein domain protein;
KEGG: rsp:RSP_1357 cytoplasmic sensor hybrid histidine
kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_001041917.1"
/db_xref="GI:126460803"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4896619"
/translation="MDIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSD
QIIEQRAVVKTALSEAEKLKGQNSRFLSELERAHTAAVMAERRLWDSIDAIEDGFAVF
DAGQRLVAANEAYRCHFEGLEVRPGMALADLLQLATTHGLIDLRGEPADLWQQRMIRR
WDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRAAIDAIPDGFVLF
DRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEALGREEEWLADRL
AAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVGLGVDITELKRQQAALESARAAAEA
ASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVLTEDQRLFSETIRSSGEALLVIIN
DILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTRFVG
DPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHLD
HVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPA
ADDEAAPPVPIEVRRALVVDGQFINRTILERQLAPCGIAVTLCRSGIEALAELSADAG
YDLLLTDHEMPDLDGLALAQRVRAGGFSMPILLLTSNPSAVRDHPAEALLAGVLQKPL
LRSDLYRRLQSLTVPPAAPDRPPPVPVPELRRMRVLAAEDNRTNQLVFGKMVRDLDID
LTFADNGREAVELYDRIRPDLVFMDISMPEMDGRAAARAIRARERGGAHVPIVALTAH
ALESDARASAAAGIDRTLTKPLRRAMILETLAAFCPAGTRPIQPALVEGPD"
misc_feature 33066..33401
/locus_tag="Rsph17029_0025"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 33399..34478
/locus_tag="Rsph17029_0025"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature 33399..33587
/locus_tag="Rsph17029_0025"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cl02459"
/db_xref="CDD:207601"
misc_feature 33825..33989
/locus_tag="Rsph17029_0025"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(33828..33830,33840..33842,33849..33851,33861..33863,
33870..33872,33918..33920,33930..33932,33939..33941,
33951..33953,33960..33962,33972..33974)
/locus_tag="Rsph17029_0025"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 33834..33836
/locus_tag="Rsph17029_0025"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 34155..34478
/locus_tag="Rsph17029_0025"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(34173..34175,34185..34187,34194..34196,34275..34277,
34281..34283,34287..34289,34293..34298,34377..34388,
34434..34436,34440..34442,34455..34460,34464..34466)
/locus_tag="Rsph17029_0025"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 34185..34187
/locus_tag="Rsph17029_0025"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(34287..34289,34293..34295,34377..34379,34383..34385)
/locus_tag="Rsph17029_0025"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 34539..34874
/locus_tag="Rsph17029_0025"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature 34539..34868
/locus_tag="Rsph17029_0025"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature order(34548..34553,34683..34685,34707..34709,34767..34769,
34830..34835)
/locus_tag="Rsph17029_0025"
/note="active site"
/db_xref="CDD:29071"
misc_feature 34683..34685
/locus_tag="Rsph17029_0025"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(34692..34697,34701..34709)
/locus_tag="Rsph17029_0025"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 34830..34838
/locus_tag="Rsph17029_0025"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 34944..35288
/locus_tag="Rsph17029_0025"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature 34944..35279
/locus_tag="Rsph17029_0025"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature order(34953..34958,35085..35087,35118..35120,35178..35180,
35235..35237,35244..35249)
/locus_tag="Rsph17029_0025"
/note="active site"
/db_xref="CDD:29071"
misc_feature 35085..35087
/locus_tag="Rsph17029_0025"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(35094..35099,35103..35108,35118..35120)
/locus_tag="Rsph17029_0025"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 35244..35252
/locus_tag="Rsph17029_0025"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(35496..36269)
/locus_tag="Rsph17029_0026"
/db_xref="GeneID:4895661"
CDS complement(35496..36269)
/locus_tag="Rsph17029_0026"
/note="PFAM: protein of unknown function DUF328;
KEGG: rsp:RSP_1358 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041918.1"
/db_xref="GI:126460804"
/db_xref="InterPro:IPR005583"
/db_xref="GeneID:4895661"
/translation="MLAVLSPAKRLAARPALDLPADLAPSEPRLQDQADALARVARDL
TAADLRRLMHISEPLARLNVARFAEFHEARNAAVPAVALFDGDTYAGLEARTMDADAL
RWAQERICILSGLYGLLRPLDRIQPHRLEMGTRLATERGATLYDFWGDRIAEALNARA
AETGARVLVNCASVEYFTAADRAALKLPVITPTFLEERNGERKVVSFWAKRARGAMAR
FIAENRLDDPEDLRAFRAGGYAYEPDLSTDERPVFLRAG"
misc_feature complement(35532..36185)
/locus_tag="Rsph17029_0026"
/note="Protein of unknown function (DUF328); Region:
DUF328; pfam03883"
/db_xref="CDD:146489"
gene complement(36269..38314)
/locus_tag="Rsph17029_0027"
/db_xref="GeneID:4896069"
CDS complement(36269..38314)
/locus_tag="Rsph17029_0027"
/note="KEGG: rsp:RSP_1359 DEAD/DEAH box helicase;
TIGRFAM: ATP-dependent DNA helicase, RecQ family;
ATP-dependent DNA helicase RecQ;
PFAM: helicase domain protein; HRDC domain protein;
DEAD/DEAH box helicase domain protein;
SMART: DEAD-like helicases-like"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_001041919.1"
/db_xref="GI:126460805"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002121"
/db_xref="InterPro:IPR004589"
/db_xref="InterPro:IPR006293"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:4896069"
/translation="MPTPRELLHSIFGFSDFRPGQEEIVEAVRQGQNTLAIMPTGGGK
SLCYQLPALSREGVTLVVSPLIALMRDQVRSLREAGVEAGALTSGNTEAETDEVFRAL
DEGRIKLLYMAPERLASAGAFALLRRVGVGLIAVDEAHCVSQWGHDFRPDYLRIGELR
RALDVPLAAFTATADAETQEEIVARLFDGVAPATFLRGFDRPNIHLAFAVKASPRQQI
LAFAAARKGRSGIVYCATRAKTETLAQALREAGHSACHYHGGMEAHDRRAVEIRFQQE
DGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEGYYQEIGRAGRDGAPAETLTLYGPD
DIRLRRSQIDEGLAPPDRKAADHARLNALLGLAEATACRRQVLLGYFGEGSEPCGTCD
LCDRPAELFDATEAVRKALSAILRTGEWFGTGHLIDILTGTATQKVRDRGHDGLPTFS
VGRDLSRPAWEAVFRQMMGRDLVRPDPERHGALKMTEAARPILRGEEQITLRRDTVKS
AAARPQARALISEEDAPLLSALKAKRRALAEAAGVPAYVIFTDRTLIEMAERRPQTLD
EMAGITGVGAKKLESYGATFLAVVTGEAEAAMHPQRRRLAGRGAAELFDRLAEAQVAL
MRGEDGTGKPLSLPQSTLRRIAEARPTTLADLDRVGDLGAQKIERFGEAFLDVLREA"
misc_feature complement(36545..38302)
/locus_tag="Rsph17029_0027"
/note="ATP-dependent DNA helicase RecQ; Region: recQ;
TIGR01389"
/db_xref="CDD:130456"
misc_feature complement(37796..38221)
/locus_tag="Rsph17029_0027"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(38180..38194)
/locus_tag="Rsph17029_0027"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(37895..37906)
/locus_tag="Rsph17029_0027"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(37526..37783)
/locus_tag="Rsph17029_0027"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cl00125"
/db_xref="CDD:212175"
misc_feature complement(37325..37639)
/locus_tag="Rsph17029_0027"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(37613..37615)
/locus_tag="Rsph17029_0027"
/note="active site residue [active]"
/db_xref="CDD:29073"
misc_feature complement(order(37457..37465,37538..37543,37601..37612))
/locus_tag="Rsph17029_0027"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(37355..37357,37364..37366,37376..37378,
37439..37441))
/locus_tag="Rsph17029_0027"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(36836..37111)
/locus_tag="Rsph17029_0027"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:198024"
misc_feature complement(36545..>36691)
/locus_tag="Rsph17029_0027"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
misc_feature complement(36281..36481)
/locus_tag="Rsph17029_0027"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene complement(38372..38662)
/locus_tag="Rsph17029_0028"
/db_xref="GeneID:4897674"
CDS complement(38372..38662)
/locus_tag="Rsph17029_0028"
/note="PFAM: protein of unknown function YGGT;
KEGG: rsp:RSP_1360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041920.1"
/db_xref="GI:126460806"
/db_xref="InterPro:IPR003425"
/db_xref="GeneID:4897674"
/translation="MISLFQILMLILDIAKFIIFAHIIMSWLINFEVLNLRQPLVGQI
WDGLSRLLEPIYSQVRRILPSMGGLDLAPLIVLVAIYALQIVLRNNMASFYY"
misc_feature complement(38402..38641)
/locus_tag="Rsph17029_0028"
/note="YGGT family; Region: YGGT; pfam02325"
/db_xref="CDD:202205"
gene 38791..39318
/locus_tag="Rsph17029_0029"
/db_xref="GeneID:4896541"
CDS 38791..39318
/locus_tag="Rsph17029_0029"
/note="KEGG: rsp:RSP_1361 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041921.1"
/db_xref="GI:126460807"
/db_xref="GeneID:4896541"
/translation="MYPYVRLFMEMRRARRLDPLPVLGTHCSSHRCLPWDLDPWRELN
NGRTLTLFDLGRAPLLVRTGMQRICSEKGWGMTVAGSSVRYRRRVVLMERLEMVSRCL
GWDGRFFYMEQSLWRKGDCTSHMLLRAATTTGSGIVPPAEVAAALGAGESPPLPDWVQ
AWIEADALRPWPPAA"
misc_feature 38866..39150
/locus_tag="Rsph17029_0029"
/note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation pathway
in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT
forms a homotetramer with four active sites; Region: 4HBT;
cd00586"
/db_xref="CDD:48031"
misc_feature order(38947..38949,39016..39018,39022..39024,39103..39114)
/locus_tag="Rsph17029_0029"
/note="active site"
/db_xref="CDD:48031"
gene 39413..40783
/locus_tag="Rsph17029_0030"
/db_xref="GeneID:4897633"
CDS 39413..40783
/locus_tag="Rsph17029_0030"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: rsp:RSP_1362 major facilitator superfamily (MFS)
transporter"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter"
/protein_id="YP_001041922.1"
/db_xref="GI:126460808"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4897633"
/translation="MARARLRIWGWYFFDWASQPYSTLLLTFVFAPYFAEVARGRYLA
EGMDAVAAGAAAQSLWATGLGAASLVVALLAPLLGAVADAGGRRLVWIWGFSAFYILG
SAGLWALAPGGDGLVWALVCFGLGFVGMEFATIFTNALLPSLGPRDRIGEISGSGFAF
GYLGGVLALALMLLFLAESAQTGRTLIGLPPAFGLDPELREGTRAVGPFTALWYAVFM
VPFFLWVREPALPRSPVRFGAALGQLGSFLRSLPRRRSLAAYLASSLLYRDALNALYG
FGGVYASGVLGWSIIQIGVFGVVGAVTATVASWVGGRADRRFGPKPVIAACILLLTAV
CIVIVGTARESLFGQPLPEGSRLPDLIFFGCGALIGGAGGALQAASRTLMACHTTPER
ATEAFGIYALSGKVTSFLAPFLIALATGLSGSQRAGIAPLILLFLAGLVLLVWVKPGG
EQRAVT"
misc_feature 39413..40693
/locus_tag="Rsph17029_0030"
/note="Permeases of the major facilitator superfamily
[General function prediction only]; Region: COG2270"
/db_xref="CDD:32451"
gene 40780..41664
/gene="mepA"
/locus_tag="Rsph17029_0031"
/db_xref="GeneID:4897285"
CDS 40780..41664
/gene="mepA"
/locus_tag="Rsph17029_0031"
/note="D-alanyl-D-alanine endopeptidase; functions in
hydrolyzing cell wall peptidoglycan; similar to LAS
metallopeptidases; forms a dimer in periplasm"
/codon_start=1
/transl_table=11
/product="penicillin-insensitive murein endopeptidase"
/protein_id="YP_001041923.1"
/db_xref="GI:126460809"
/db_xref="InterPro:IPR005073"
/db_xref="GeneID:4897285"
/translation="MIRILSFLLALGMATGVQAEPKANKLFGAQTGPSRHAPMPIGSY
NRGCAAGLVQMPESGPTWQVMRLSRNRAWGHPEMIEFLQALSVAARQIGWAGLYVGDI
SQPRGGPMTSGHASHQIGLDADVWMLPPRRLDLTVADRERISSIPVRSADQRSVTANW
TRAHHTLLRSAASDDRVDRIFVAAAVKLEMCKTATRADRAWLQKIRPVPGHDTHFHIR
LKCPRGAVACQTQTPTVAELSKGGDGCDETLTWWVTDYLNPPKSPPKKPSGPRPKGAR
DYTLSDLPAQCREVLASR"
misc_feature 40780..41661
/gene="mepA"
/locus_tag="Rsph17029_0031"
/note="penicillin-insensitive murein endopeptidase;
Reviewed; Region: mepA; PRK09429"
/db_xref="CDD:181849"
gene 41637..42527
/locus_tag="Rsph17029_0032"
/db_xref="GeneID:4896419"
CDS 41637..42527
/locus_tag="Rsph17029_0032"
/note="KEGG: rsp:RSP_1364 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041924.1"
/db_xref="GI:126460810"
/db_xref="GeneID:4896419"
/translation="MPRSPRLALIAGLVLGLALGGSADTPGDGVTRFVWTAEDPLFGG
LSALEMSEDGRSVTVLSDRGAWTRGQVIRDPEGRILDIRTEPMRLLRGRGEEPLARRR
NDSEGLALAPDGTAYVSFEGAARVLRYRDLSGPAENLPVYPDFALMQRNSALEALAID
AGGAIYTLPERSGSATRPFPVYRYQNGVWTQPFAVPRRGSFLIVGADFGPDGRLYVLE
RRFRGLLGFASRVRRFTLGPEGITAEETVFETRSGRFGNLEGISVWRDPGGGTVLSLV
ADDNFLFLLRTELVELRLRD"
misc_feature 41736..42476
/locus_tag="Rsph17029_0032"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4246"
/db_xref="CDD:33969"
misc_feature 41739..42476
/locus_tag="Rsph17029_0032"
/note="Esterase-like activity of phytase; Region:
Phytase-like; pfam13449"
/db_xref="CDD:205627"
gene 42609..43235
/locus_tag="Rsph17029_0033"
/db_xref="GeneID:4896876"
CDS 42609..43235
/locus_tag="Rsph17029_0033"
/note="TIGRFAM: conserved hypothetical integral membrane
protein;
PFAM: protein of unknown function DUF165;
KEGG: rsp:RSP_1365 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041925.1"
/db_xref="GI:126460811"
/db_xref="InterPro:IPR003744"
/db_xref="GeneID:4896876"
/translation="MTRSLIPAILAMAAIVVASNILVQFLFGQWLTWGAFTYPLAFLV
TDLTNRFRGAAAARRVVLAGFATGIVCSLIGTQIQGEFGPLVTLRIALGSGLAFLVAQ
MLDVTVFDRMRHARGWWQAPLISTLVGSSLDTLIFFGTAFSAALVWLEPSNDVSWANE
ILPLLGAGPEAPLWLSLAVADWSVKLLLALVALLPFRIIVRRMTADVA"
misc_feature 42615..>43034
/locus_tag="Rsph17029_0033"
/note="Uncharacterized ACR, YhhQ family COG1738; Region:
DUF165; cl00756"
/db_xref="CDD:193931"
gene 43515..43940
/locus_tag="Rsph17029_0034"
/db_xref="GeneID:4897318"
CDS 43515..43940
/locus_tag="Rsph17029_0034"
/note="PFAM: Class I peptide chain release factor;
KEGG: rsp:RSP_1366 hypothetical protein"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase domain-containing
protein"
/protein_id="YP_001041926.1"
/db_xref="GI:126460812"
/db_xref="InterPro:IPR000352"
/db_xref="GeneID:4897318"
/translation="MLRITDQITLADWELTESFSRSSGPGGQNVNKVETAVELRFEAE
RSPHLSPAVKARLKRLAGRRWTQEGAIVIRAEETRSQQRNRELARERLAEMVRAALVA
PKRRIATKPTLGSQRRRLAAKSIRSDVKAGRGRVSDEEG"
misc_feature 43515..43931
/locus_tag="Rsph17029_0034"
/note="hypothetical protein; Provisional; Region:
PRK09256"
/db_xref="CDD:181730"
misc_feature <43518..43925
/locus_tag="Rsph17029_0034"
/note="Protein chain release factor B [Translation,
ribosomal structure and biogenesis]; Region: PrfB;
COG1186"
/db_xref="CDD:31379"
gene complement(43949..45241)
/locus_tag="Rsph17029_0035"
/db_xref="GeneID:4897431"
CDS complement(43949..45241)
/locus_tag="Rsph17029_0035"
/EC_number="2.4.2.11"
/note="catalyzes the formation of nictonate and
5-phospho-alpha-D-ribose 1-diphosphate from nicotinate
D-ribonucleotide and diphosphate"
/codon_start=1
/transl_table=11
/product="nicotinate phosphoribosyltransferase"
/protein_id="YP_001041927.1"
/db_xref="GI:126460813"
/db_xref="InterPro:IPR006406"
/db_xref="InterPro:IPR007229"
/db_xref="GeneID:4897431"
/translation="MVDIATRVYNHKWKIDPIVRSLIDTDFYKLLMCQSVFRNRPDTV
VRFSLINRTSSVRLAELIDEGELREQLDHIRTLSLSRGESTFLRGNTFYGKRQMFRPD
FMEWFENLRMPPYHLEKRDGQYELTFEGKWPEVMLWEIPALAVLMELRSRAVLATMGR
FELQVLYARAMTKLWEKIERLKRIERLKIADFGTRRRHSFLWQDWCVQAMIEGLGDAF
TGTSNCLIAMRREVEAIGTNAHELPMVYSALATTDEDLARAPYQVLADWHEEHDGNLR
IILPDTYGTEGFLARAPDWLSTWTGIRIDSGDPAQGAETAIRWWQSRGEDPRRKLVIF
SDGLDVEKIEELHRQFHGRVKVSFGWGTMFTNDFRGLVKDDALAPFSLVCKAVAADGR
PTVKLSDNPLKAMGPADEIARYKRVFGVGDQVAYEVQV"
misc_feature complement(43961..45211)
/locus_tag="Rsph17029_0035"
/note="nicotinate phosphoribosyltransferase; Provisional;
Region: PRK05321"
/db_xref="CDD:180013"
misc_feature complement(43994..45190)
/locus_tag="Rsph17029_0035"
/note="nicotinate phosphoribosyltransferase; Region:
NAPRTase; TIGR01514"
/db_xref="CDD:130578"
misc_feature complement(order(44147..44149,44156..44161,44165..44167,
44234..44239,44327..44329,44576..44581,44654..44662))
/locus_tag="Rsph17029_0035"
/note="active site"
/db_xref="CDD:29612"
gene complement(45243..45848)
/locus_tag="Rsph17029_0036"
/db_xref="GeneID:4896065"
CDS complement(45243..45848)
/locus_tag="Rsph17029_0036"
/EC_number="3.5.1.19"
/note="PFAM: isochorismatase hydrolase;
KEGG: rsp:RSP_1368 probable pyrazinamidase/nicotinamidase"
/codon_start=1
/transl_table=11
/product="nicotinamidase"
/protein_id="YP_001041928.1"
/db_xref="GI:126460814"
/db_xref="InterPro:IPR000868"
/db_xref="GeneID:4896065"
/translation="MRPQTEALIVIDVQNDFCPGGALAVAGGDAIIPRINALLPEFGA
RIFTQDWHPADHSSFASTHEAVPFSLIEMPYGPQVLWPTHCVQGTRGAEFHPALETAP
ADLVLRKGFRRGIDSYSAFFENDRTTPTGLEGYLRSRGIEAVTLAGLATDFCVAYSAL
DAARLGFRVTVLEGASAAIDLNGSLAAIKAQMAEAGVALEP"
misc_feature complement(45249..45836)
/locus_tag="Rsph17029_0036"
/note="Nicotinamidase/pyrazinamidase (PZase).
Nicotinamidase, a ubiquitous enzyme in prokaryotes,
converts nicotinamide to nicotinic acid (niacin) and
ammonia, which in turn can be recycled to make
nicotinamide adenine dinucleotide (NAD). The same enzyme
is...; Region: nicotinamidase; cd01011"
/db_xref="CDD:29549"
misc_feature complement(45252..45830)
/locus_tag="Rsph17029_0036"
/note="Isochorismatase family; Region: Isochorismatase;
pfam00857"
/db_xref="CDD:201475"
misc_feature complement(order(45387..45389,45522..45524,45813..45815))
/locus_tag="Rsph17029_0036"
/note="catalytic triad [active]"
/db_xref="CDD:29549"
misc_feature complement(order(45597..45599,45693..45695,45699..45701))
/locus_tag="Rsph17029_0036"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29549"
misc_feature complement(45399..45404)
/locus_tag="Rsph17029_0036"
/note="conserved cis-peptide bond; other site"
/db_xref="CDD:29549"
gene 46041..46823
/locus_tag="Rsph17029_0037"
/db_xref="GeneID:4897521"
CDS 46041..46823
/locus_tag="Rsph17029_0037"
/note="PFAM: short-chain dehydrogenase/reductase SDR; KR;
KEGG: rsp:RSP_1369 short-chain dehydrogenase/reductase
SDR"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001041929.1"
/db_xref="GI:126460815"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:4897521"
/translation="MTDTPAAHPVFPDLKGASVFLSGGGSGIGAALTEGFLRQGAQVA
FVQRSDATAFCDRMEAETGARPLFLPCDVTDIPALRQALAEVAERQGPIRVLVNAAAH
DDRHTTAEVTEDYWDRAQAVNLKHYFFAAQAVIPGMKAAGGGSIVNFSSISYMMGNAG
YPAYTTANSGINGLTRSLAREFGPDRIRVNALAPGWVLTERQKDLWVTEDGLQAHLDR
QCLKEALVPADIVGGVLFLASEASRMMTGQALVIDGGVVVTG"
misc_feature 46077..46805
/locus_tag="Rsph17029_0037"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Reviewed; Region: PRK12826"
/db_xref="CDD:183775"
misc_feature 46146..46799
/locus_tag="Rsph17029_0037"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(46179..46187,46251..46259,46335..46343,46404..46406,
46485..46493,46530..46532,46542..46544,46620..46631,
46635..46640)
/locus_tag="Rsph17029_0037"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(46407..46409,46491..46493,46530..46532,46542..46544)
/locus_tag="Rsph17029_0037"
/note="active site"
/db_xref="CDD:212491"
gene 46820..47743
/locus_tag="Rsph17029_0038"
/db_xref="GeneID:4896554"
CDS 46820..47743
/locus_tag="Rsph17029_0038"
/note="PFAM: 2-keto-3-deoxy-galactonokinase;
KEGG: rsp:RSP_1371 putative
2-dehydro-3-deoxygalactonokinase"
/codon_start=1
/transl_table=11
/product="2-keto-3-deoxy-galactonokinase"
/protein_id="YP_001041930.1"
/db_xref="GI:126460816"
/db_xref="InterPro:IPR007729"
/db_xref="GeneID:4896554"
/translation="MRPGWIAADWGTSRLRVWAMGAEGVLAEARSDEGMGQVAAGGFE
AALLRLIGPWLGDGPAVPVVVCGMAGARQGWQEAPYRRLPCAPVDPQALVPVPSEDPR
IAVRIVPGLAQAKPADVMRGEETQIAGALALLGSFDGVICLPGTHSKWAQVSAGEVVS
FRSFLTGELFALLSERSVLRHGLAAEGWDDEAFLAAVSDGMSHPQKLGAKLFGLRAEA
LLQDLPPATARARLSGLLIGLELVGARSYWLGQPVVLVGEEALAARYGAALAAQGVQA
RLLPAAACTLGGLAAAVGQLTLASSGAGRKA"
misc_feature 46844..47650
/locus_tag="Rsph17029_0038"
/note="2-keto-3-deoxy-galactonokinase; Region: DGOK;
pfam05035"
/db_xref="CDD:203157"
gene complement(47701..49311)
/locus_tag="Rsph17029_0039"
/db_xref="GeneID:4895905"
CDS complement(47701..49311)
/locus_tag="Rsph17029_0039"
/note="PFAM: alpha amylase, catalytic region;
SMART: alpha amylase, catalytic sub domain;
KEGG: rsp:RSP_1370 alpha amylase, catalytic subdomain"
/codon_start=1
/transl_table=11
/product="alpha amylase"
/protein_id="YP_001041931.1"
/db_xref="GI:126460817"
/db_xref="InterPro:IPR006047"
/db_xref="InterPro:IPR006589"
/db_xref="GeneID:4895905"
/translation="MSDWWRGSVTYQIYPRSFQDSDGDGVGDLRGIIERLDHVAWLGA
DAIWLSPIFPSPMEDMGYDVSDYTAIHPLFGSMEDFDALLARAHELGLKVIIDQVLSH
SSSAHPFFRESRRSRDNPKADWYVWADAQPDGSPPNNWLSVFGGSAWEWDAQRRQYYL
HNFLISQPDFNFHNPEVQDWLLDQMRFWLDRGVDGFRLDTVNFYFHDAELRSNRPNPQ
NGPIPPVNAYDMQDHAFSKSRIENIAFLLRMRKLLDDYPDRAMVGEVADGLRGLAIMA
EYTSGADRLHMAYTFEMLSRTFTAGHFRSRIEEFFATAPHGWPCWAFSNHDVVRHATR
WAGHGAEDDVARLAAAMLLSFEGSVSLYQGEELGQTETELLYEELTDPPGLRFWPEEK
GRDGCRTPMVWDDGPAGGFTTGTPWLPVKPPQLARNVASQKGIPGSVLETYRALLQFR
RTQPALIRGRSRFFDLPEPMLGFTRTLDGQSLACFFNLGIEPVSATLPGHGGLIGPAQ
AAVLEGDRLTLGANGYAFLPAPEDASVS"
misc_feature complement(47899..49305)
/locus_tag="Rsph17029_0039"
/note="Alpha amylase catalytic domain found in
oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase) and related
proteins; Region: AmyAc_OligoGlu; cd11330"
/db_xref="CDD:200469"
misc_feature complement(47815..49290)
/locus_tag="Rsph17029_0039"
/note="Glycosidases [Carbohydrate transport and
metabolism]; Region: AmyA; COG0366"
/db_xref="CDD:30715"
misc_feature complement(order(48130..48132,48331..48336,48520..48522,
48715..48717,48811..48813,48823..48825,48880..48882,
49006..49008,49015..49017,49126..49128,49135..49137))
/locus_tag="Rsph17029_0039"
/note="active site"
/db_xref="CDD:200469"
misc_feature complement(order(48331..48333,48520..48522,48715..48717))
/locus_tag="Rsph17029_0039"
/note="catalytic site [active]"
/db_xref="CDD:200469"
gene 49785..51023
/locus_tag="Rsph17029_0040"
/db_xref="GeneID:4895081"
CDS 49785..51023
/locus_tag="Rsph17029_0040"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: rsp:RSP_1372 major facilitator superfamily (MFS)
transporter"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter"
/protein_id="YP_001041932.1"
/db_xref="GI:126460818"
/db_xref="InterPro:IPR000437"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4895081"
/translation="MTKSPIFTPVLISGCIVLMLGFAIRASFGVFQIPIAEEFDWPRS
DFSMAIAIQNLAWGIGQPIFGMLAEKFGDRRAIVAGALTYAAGLVLSSFAVTPLQHQF
LEVLVGFGIAGTGFGVILAVVGRATAPEHRSLALGIATAAGSAGQVFGAPAAEILLGF
YSWQTVFVIFAGVILAALFALPFMRAPVTATKAELEESLGTVLRRAFRDPSYTLIFVG
FFSCGYQLAFITAHFPAFVTEMCGAIDPRGPLAALGITTTSALGALAISLIGLANIAG
TITAGWLGKRYSKKYLLAAIYTGRTLAAALFILVPMTPTTVLLFSLSMGALWLATVPL
TSGLVAHLYGLRYMGTLYGFVFLSHQLGSFMGVWLGGRMYDMTGDYTMVWWIGVGVGA
FSAIVHLPIRETRSPALQPA"
misc_feature 49815..50975
/locus_tag="Rsph17029_0040"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 49827..50882
/locus_tag="Rsph17029_0040"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(49857..49859,49866..49874,49878..49883,49932..49934,
49941..49946,49953..49955,49965..49970,49974..49979,
50115..50120,50130..50135,50142..50147,50154..50156,
50190..50195,50202..50207,50223..50225,50451..50453,
50460..50465,50472..50477,50484..50486,50568..50570,
50580..50582,50592..50594,50601..50603,50613..50615,
50757..50759,50766..50771,50778..50780,50790..50795,
50802..50804,50835..50840,50847..50852,50859..50864,
50871..50873)
/locus_tag="Rsph17029_0040"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 51116..52288
/locus_tag="Rsph17029_0041"
/db_xref="GeneID:4895422"
CDS 51116..52288
/locus_tag="Rsph17029_0041"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: rsp:RSP_1373 major facilitator superfamily (MFS)
transporter"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily transporter"
/protein_id="YP_001041933.1"
/db_xref="GI:126460819"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:4895422"
/translation="MRAGIACLVLAYVLSQFYRAFLAVLAPTLKAELGVSAEDLAAAS
GIWFLAFALMQFPVGWALDRIGPRLTSMVLLGAGGAGGALVFAQAEGPAALMAAMALI
GIGCSPVLMASYYIFARSFSPALFGTLAAAVVGIGSLGNIAGSVPLAWAVETFGWRET
LMALAGVTLAAAAAIGTLVRDPARVEGPARGSMFDLMRMPALWPVLAMMVVCYAPAAG
LRGLWIGPYYADAFGAAPAEIGRATLVMGLAMVAGSFAYGPLDRLLGTRKGLILGGNL
LTALCLLALWAWPAVGGWPALLLFAGIGFFGASFPMVIAHGRAFVPPHLTGRGVTLLN
FFGIASPGLMQFATGAVHGSVAPVPPAAPYAALFLFFALFILAGCAIYAVSRDRTD"
misc_feature 51128..52168
/locus_tag="Rsph17029_0041"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(51170..51172,51179..51187,51191..51196,51245..51247,
51254..51259,51266..51268,51278..51283,51287..51292,
51431..51436,51443..51448,51455..51460,51467..51469,
51503..51508,51515..51520,51536..51538,51755..51757,
51764..51769,51776..51781,51788..51790,51830..51832,
51842..51844,51854..51856,51863..51865,51875..51877,
52019..52021,52028..52033,52043..52045,52055..52060,
52067..52069,52100..52105,52112..52117,52124..52129,
52136..52138)
/locus_tag="Rsph17029_0041"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 52337..53371
/locus_tag="Rsph17029_0042"
/db_xref="GeneID:4895792"
CDS 52337..53371
/locus_tag="Rsph17029_0042"
/note="PFAM: glycosyl transferase, group 1;
KEGG: rsp:RSP_1374 putative lipopolysaccharide core
biosynthesis mannosyltransferase protein"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001041934.1"
/db_xref="GI:126460820"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:4895792"
/translation="MPVQPDRIEVIAPNLKRRLSGVTATIARLVPVQARLIGIAATGP
GLPADIPHLPLWRLPFLPRDRWRVWHARRNTEMLLGLALRHLLRRRLKLLFTSASQRR
HTGYTRWLIGRMDALVATSRRTASYLERPAEVILHGIDTDTFRPGDRAEVRARLGLPE
AVLVGCYGRIRAQKGTDVFVHAMMRLLPERPGVAAVVMGRAVGEHQAFLDGLRREVEA
AGLGPRILFRPEVTVDRMPDWYRALDLYVAPQRWEGFGLTPLEAMACGVPVVATRVGA
FEELVSAETGRLVPPGDLEAMTAEVAALLDDADLRRRMAEAARARTLQGFRIEDEAAA
LVALYRRLLA"
misc_feature <52658..53233
/locus_tag="Rsph17029_0042"
/note="This family is most closely related to the GT1
family of glycosyltransferases and named after YqgM in
Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to...; Region:
GT1_YqgM_like; cd03801"
/db_xref="CDD:99974"
gene 53368..53994
/locus_tag="Rsph17029_0043"
/db_xref="GeneID:4896106"
CDS 53368..53994
/locus_tag="Rsph17029_0043"
/note="KEGG: rsp:RSP_1375 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041935.1"
/db_xref="GI:126460821"
/db_xref="GeneID:4896106"
/translation="MTRLGFLLARTFRREAPLAALSLPEEALLARFATERIALVGNAR
SLSQTAFGPEIDAADLVIRLNRAPMPDPASHGTRTDALALATSLQAEALDRLAPRLTL
WMSPKRKRLPWHVASRRGFYLHSRADYEDLNRRLGAPPSTGLMMIDLLARSRAASVTL
YGFDFFASLSLTGSRTAAQVPHDFGAEARFVQALLETDPRFTQRGSPP"
misc_feature <53473..53949
/locus_tag="Rsph17029_0043"
/note="Glycosyltransferase family 29 (sialyltransferase);
Region: Glyco_transf_29; pfam00777"
/db_xref="CDD:201438"
gene 54123..55145
/locus_tag="Rsph17029_0044"
/db_xref="GeneID:4896081"
CDS 54123..55145
/locus_tag="Rsph17029_0044"
/EC_number="1.2.1.11"
/note="catalyzes the formation of 4-aspartyl phosphate
from aspartate 4-semialdehyde"
/codon_start=1
/transl_table=11
/product="aspartate-semialdehyde dehydrogenase"
/protein_id="YP_001041936.1"
/db_xref="GI:126460822"
/db_xref="InterPro:IPR000534"
/db_xref="InterPro:IPR005986"
/db_xref="InterPro:IPR012280"
/db_xref="GeneID:4896081"
/translation="MGYRVVVAGATGNVGREMLNILAEREFPVEEIAALASRKSLGTE
VSFGDKTLTTKDLDTFDFTGWDIALFAVGSDATKIYAPKAAAAGCVVIDNSSLYRYDP
QVPLIVPEVNADAIEGYKAKNIIANPNCSTAQMVVALKPLHDRARIKRVVVSTYQSVS
GAGKAGIDELWNQTKGIYVPGQEVEPSKFTKQIAFNVIPHIDSFMEDGSTKEEWKMVA
ETKKILDPKVKVTATCVRVPVFVGHSEAINIEFEDFLDEEEARDILREAPGVLVVDKR
EAGGYITPVECVGEYATYISRIRQDSTLDNGLNLWCVSDNLRKGAALNAVQIAEVLGN
RCLKKG"
misc_feature 54126..55118
/locus_tag="Rsph17029_0044"
/note="aspartate-semialdehyde dehydrogenase; Provisional;
Region: PRK14874"
/db_xref="CDD:184874"
misc_feature 54132..54479
/locus_tag="Rsph17029_0044"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:197927"
misc_feature 54537..55079
/locus_tag="Rsph17029_0044"
/note="Semialdehyde dehydrogenase, dimerisation domain;
Region: Semialdhyde_dhC; pfam02774"
/db_xref="CDD:202385"
gene complement(55230..55874)
/locus_tag="Rsph17029_0045"
/db_xref="GeneID:4896442"
CDS complement(55230..55874)
/locus_tag="Rsph17029_0045"
/EC_number="4.2.1.1"
/note="PFAM: carbonic anhydrase;
KEGG: rsp:RSP_1377 carbonic anhydrase"
/codon_start=1
/transl_table=11
/product="carbonate dehydratase"
/protein_id="YP_001041937.1"
/db_xref="GI:126460823"
/db_xref="InterPro:IPR001765"
/db_xref="GeneID:4896442"
/translation="MHNARPLPNYLVQRFHGWRATTFADNKSWYRRLSESGQHPRAMV
ISCCDSRVHVTSIFGADEGEFFIHRNIANLVPPYSPDGKQHGTSAAVEYAVTALGVAH
IVVLGHSNCGGVKGCHDMCSGKAPQLEETSSFVGRWMDILRPGYERVKDLPEEERVTA
LEKEAVLVSIGNLMTFPFVREAVEREVLTLHALWTHIGEGSLEQYTPGQGFVPV"
misc_feature complement(55260..55835)
/locus_tag="Rsph17029_0045"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeB; cd00884"
/db_xref="CDD:48223"
misc_feature complement(order(55290..55292,55542..55544,55551..55553,
55581..55583,55596..55598,55677..55679,55686..55688,
55722..55730,55734..55736,55755..55757,55761..55763))
/locus_tag="Rsph17029_0045"
/note="active site clefts [active]"
/db_xref="CDD:48223"
misc_feature complement(order(55542..55544,55551..55553,55728..55730,
55734..55736))
/locus_tag="Rsph17029_0045"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:48223"
misc_feature complement(order(55269..55271,55275..55277,55281..55286,
55290..55292,55461..55463,55596..55601,55608..55613,
55668..55670,55674..55676,55680..55688,55701..55712,
55716..55718,55722..55733))
/locus_tag="Rsph17029_0045"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48223"
gene 56013..56396
/locus_tag="Rsph17029_0046"
/db_xref="GeneID:4895817"
CDS 56013..56396
/locus_tag="Rsph17029_0046"
/note="KEGG: rsp:RSP_1378 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041938.1"
/db_xref="GI:126460824"
/db_xref="GeneID:4895817"
/translation="MACMIMALRPVDRVRQDAEPIAAMYREMGTKAAEQIVHRAFAEL
AMTIAALSHQVRMRDRAEIPRRLRRLQRMCENLGMVSLGLVAADARGAVELGDMTAFA
AIWARLLRVAERSLASDKELLDLSL"
gene 56467..57852
/locus_tag="Rsph17029_0047"
/db_xref="GeneID:4896612"
CDS 56467..57852
/locus_tag="Rsph17029_0047"
/EC_number="3.4.11.1"
/note="PFAM: peptidase M17, leucyl aminopeptidase domain
protein;
KEGG: rsp:RSP_1379 cytosol aminopeptidase"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_001041939.1"
/db_xref="GI:126460825"
/db_xref="InterPro:IPR000819"
/db_xref="GeneID:4896612"
/translation="MPLSFADPAAVSRPVHVVASDALADWLGGRTEAERAWLAATGFE
ASLGELRLLPDAAGGVAAAVLGSGTARARARSRFGLARGLAALPEGDWHLEGDLSPEA
AAEAALGWLLSAYAFTRYRAAAKSPKARLKLPAGCDGARLMAMAEAEALTRDLINTPA
SDLGPQELEEAFLALADRFGAETAVIRGDKLLDRNLPMIHAVGRASTRAPRLLEMRWG
ERGPRVTLVGKGVCFDTGGLDIKPSTGMLLMKKDMGGAATVMGLAQMIMALELPVRLR
VLVPAVENAISGNAMRPKDILTSRKGLTVEVNNTDAEGRLILGDALTLADEEEADLIV
SMATLTGAARVAVGPDLAPFYTDDEDLAAALQSAAGPACDPVWRLPFWEPYEALIEPG
IADLDNAPSGGFAGSITAALFLRRFVENPRYMHFDIYGHTPADAPARPKGGVGQGARA
ILTALPRMLGL"
misc_feature 56572..57831
/locus_tag="Rsph17029_0047"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature order(56584..56589,56626..56628,56641..56643,56686..56688,
56935..56937,56941..56949,57079..57081,57085..57087,
57163..57165,57181..57183,57196..57198,57205..57207,
57214..57219,57313..57315,57319..57330,57334..57336,
57340..57354,57370..57372,57376..57378,57388..57390,
57496..57510,57517..57519,57595..57600,57604..57606,
57619..57621,57625..57630,57643..57645,57649..57651,
57679..57684,57688..57690,57787..57789)
/locus_tag="Rsph17029_0047"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(57151..57153,57166..57168,57187..57189,57220..57222,
57397..57399,57403..57405,57409..57411,57481..57483)
/locus_tag="Rsph17029_0047"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(57151..57153,57166..57168,57220..57222,57397..57399,
57403..57405)
/locus_tag="Rsph17029_0047"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 57852..58664
/locus_tag="Rsph17029_0048"
/db_xref="GeneID:4896750"
CDS 57852..58664
/locus_tag="Rsph17029_0048"
/note="PFAM: NLP/P60 protein;
KEGG: rsp:RSP_1380 hypothetical protein"
/codon_start=1
/transl_table=11
/product="NLP/P60 protein"
/protein_id="YP_001041940.1"
/db_xref="GI:126460826"
/db_xref="InterPro:IPR000064"
/db_xref="GeneID:4896750"
/translation="MDRRTTPCSGEVAHVSLKGQVAAPRFTDGTPARIGLPVVDLLAR
PDGPRDRQLLLGEDFLVIDRREGHAFGRAAKDGYCGWLPEAALAAPETVTHRVAVPAT
HLYPEPRVQAHEIAALSFGARLTVIGEARNFLQTTMGWVPACHLWPLDRLHSDPVAVA
RFFHGTPYLWGGNSRAGIDCSGLAQAALLACGMDCPGDSDLQQTVGTEVSGDLQAGDL
LFWKGHVAMAIDAQRMIHATGYVMGVIEEETEAAIARIAAAGEGPVLARRRP"
misc_feature <58320..58571
/locus_tag="Rsph17029_0048"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature 58344..>58571
/locus_tag="Rsph17029_0048"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(58771..59991)
/locus_tag="Rsph17029_0049"
/db_xref="GeneID:4896923"
CDS complement(58771..59991)
/locus_tag="Rsph17029_0049"
/note="PFAM: protein of unknown function DUF1006;
KEGG: rsp:RSP_1381 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041941.1"
/db_xref="GI:126460827"
/db_xref="InterPro:IPR009351"
/db_xref="GeneID:4896923"
/translation="MILPNPLARRLFLHLHALAEPPTGPAKGEALLALIDRLGFVQID
SISTVARAHHMILFARRQAYRPEALDRLLAQRHLFEHWTHDAAVIPARFFPFWHHRFR
RDRPRLLARWRGWQREGFEEQFDAVLARIAESGPVSAAEVGEEEERGTGGWWDWHPSK
AALEYLWRVGELSITRRDSFRKVYDLTSRVIPSGWLAMDPGDAATIHWACSEALDRLG
FATSGELAAFWAAASPAEAQAWCHDALARGEIVEVRVEGADGSLRRSYARPEVAALAE
AAPDPSPRLRILSPFDPVLRDRARAERLFGFRYRIEVFVPEAKRTYGYYVFPILEGDR
LIGRIDMRAHRESGSLRVRALWPELGVRLGSRRLGRLGAELDRLAQFAGCDQVKFEPD
WLRETLPEGSVAGD"
misc_feature complement(58819..59931)
/locus_tag="Rsph17029_0049"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3214"
/db_xref="CDD:33027"
misc_feature complement(58849..59919)
/locus_tag="Rsph17029_0049"
/note="Protein of unknown function (DUF1006); Region:
DUF1006; pfam06224"
/db_xref="CDD:203411"
gene complement(60006..61184)
/locus_tag="Rsph17029_0050"
/db_xref="GeneID:4896930"
CDS complement(60006..61184)
/locus_tag="Rsph17029_0050"
/note="TIGRFAM: radical SAM enzyme, Cfr family;
PFAM: Radical SAM domain protein;
KEGG: rsp:RSP_1382 radical SAM superfamily protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001041942.1"
/db_xref="GI:126460828"
/db_xref="InterPro:IPR004383"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:4896930"
/translation="MTANAPITQDVMTLPRKLPEGGPVNIVGLTREELLAALVAAGTP
ERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEHFAIVLPEVVTRQISADGT
RKYLIRIAGGHEVETVYIPEEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIV
GQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLS
LSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDS
LRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYR
RSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKSATERARKSRAQIAAETGL
"
misc_feature complement(60042..61118)
/locus_tag="Rsph17029_0050"
/note="Predicted Fe-S-cluster redox enzyme [General
function prediction only]; Region: COG0820"
/db_xref="CDD:31162"
gene complement(61323..61853)
/locus_tag="Rsph17029_0051"
/db_xref="GeneID:4896906"
CDS complement(61323..61853)
/locus_tag="Rsph17029_0051"
/note="KEGG: rsp:RSP_1383 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041943.1"
/db_xref="GI:126460829"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4896906"
/translation="MRTTKGRLLPAAAIVLACLATGAAAQESTNRVATKTDWSVFAES
SPKECWGVSSPKQTQATRDGKAVDVRRGDILLFVTYRPGSGAKGEISFTGGYPFAPGS
TVNVDIGGTKFELFTDGEWAWPANAQDDASLLASMKRGSTAVLTARSARGTQTKDTFS
LSGFTAAMSDAETRCK"
misc_feature complement(61350..>61466)
/locus_tag="Rsph17029_0051"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; cl02207"
/db_xref="CDD:154799"
gene 62020..63009
/locus_tag="Rsph17029_0052"
/db_xref="GeneID:4896894"
CDS 62020..63009
/locus_tag="Rsph17029_0052"
/note="PFAM: L-asparaginase II;
KEGG: rsp:RSP_1384 hypothetical protein"
/codon_start=1
/transl_table=11
/product="L-asparaginase II"
/protein_id="YP_001041944.1"
/db_xref="GI:126460830"
/db_xref="InterPro:IPR010349"
/db_xref="GeneID:4896894"
/translation="MTDPARMVELWRGGLLESWHTGHAAVWSADGGLVEAWGDPGTVI
FPRSSCKMMQALPLLESGAGAGLSSQRLALACSSHQGAELHTGHVGRWLTDLGLCEAD
LRCGAHMPADTAERDRLVRAYEEPCQIHNNCSGKHAGFLMLSQHLKAGPEYVEIDHPV
QQAVRTAFEEVTDEASPGYGIDGCSAPNFATTVAGLARAMAFFAGASAGGGVRERSAA
RLVEAMIAHPELVAGEGRACTELMRAMGGRAAIKTGAEAVFVAIVPEKRLGIALKIVD
GSTRASEAAIAALLVRHGLLDPAHPAARKRLDAVQTNWRGRETGILRAAPGFP"
misc_feature 62038..62994
/locus_tag="Rsph17029_0052"
/note="L-asparaginase II; Region: Asparaginase_II;
pfam06089"
/db_xref="CDD:147964"
gene complement(63025..63864)
/locus_tag="Rsph17029_0053"
/db_xref="GeneID:4897080"
CDS complement(63025..63864)
/locus_tag="Rsph17029_0053"
/note="PFAM: NAD-dependent epimerase/dehydratase;
dTDP-4-dehydrorhamnose reductase;
KEGG: rsp:RSP_1385 hypothetical protein"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_001041945.1"
/db_xref="GI:126460831"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR005913"
/db_xref="GeneID:4897080"
/translation="MKTLLSLGHGYSAQALAHRLLPQGWTVIGTTRSAAKAAELEAGG
IEPLLWPGDLGPALARASHILASAAPGREGDPFLATHGAELARAGARWVGYLSTTGVY
GDHAGGWVDEDTPLTPSTERGQARVQAERQWQALGLPLHIFRLAGIYGPGRGPFEKVR
DGTARRIVKPGQVFSRIHVADIAQVLEASMQHPEPGAIYNVCDDDPAPPEDVLGYAAE
LLGLPPPPEVPYDAAEMTPMARSFYAESKRVRNDRIKARLGIALLHPDYRSGLRSLLA
GGD"
misc_feature complement(63091..63855)
/locus_tag="Rsph17029_0053"
/note="atypical (a) SDRs, subgroup 4; Region: SDR_a4;
cd05266"
/db_xref="CDD:187576"
misc_feature complement(63307..63843)
/locus_tag="Rsph17029_0053"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:205638"
misc_feature complement(order(63421..63432,63487..63489,63499..63501,
63571..63579,63658..63666,63766..63774,63829..63837,
63841..63843))
/locus_tag="Rsph17029_0053"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187576"
gene 63999..65477
/locus_tag="Rsph17029_0054"
/db_xref="GeneID:4897100"
CDS 63999..65477
/locus_tag="Rsph17029_0054"
/EC_number="3.2.2.4"
/note="Catalyzes the hydrolysis of AMP to form adenine and
ribose 5-phosphate using water as the nucleophile"
/codon_start=1
/transl_table=11
/product="AMP nucleosidase"
/protein_id="YP_001041946.1"
/db_xref="GI:126460832"
/db_xref="InterPro:IPR000845"
/db_xref="InterPro:IPR011271"
/db_xref="GeneID:4897100"
/translation="MSDAPLLLLVPEVPDRETFTDPARAVDRLEEIYIRSTRFLSGHF
SASATGGQPGGRVRAYYPEIRLTTTSFTRADSRLSFGHVAEPGSYSTTVTRPDLFRNY
LIQQIDLLMQNHGVPVEIGVSATPMPVHFAVANDPTVSVPQEGVLSYPLRDVFDVPDL
STTNDDIVNGSRLSNSDGSKPLAPFTAQRVDYSLARLTHYTATNPRHFQNHVLFTNYQ
FYVDEFEAIGRAALADPASGYSAFVGPGDQEITDPETPLALLPRLPQMPTYHLKRPDG
QGITLVNIGVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQSLGDFVLAHAYLRED
HVLDDDLPVWVPIPALAEIQIALEDAVEEVTQLQGYELKRIMRTGTVATIDNRNWELR
DQSGPVQRLSQSRAVALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASD
FYRTQVARHLRIGIRAMEMLRETPIERIHSRKLRSFEETAFL"
misc_feature 64029..65471
/locus_tag="Rsph17029_0054"
/note="AMP nucleosidase; Provisional; Region: PRK08292"
/db_xref="CDD:181358"
misc_feature 64065..64541
/locus_tag="Rsph17029_0054"
/note="Bacterial AMP nucleoside phosphorylase N-terminus;
Region: AMNp_N; pfam10423"
/db_xref="CDD:204484"
misc_feature 64641..65408
/locus_tag="Rsph17029_0054"
/note="Nucleoside phosphorylase [Nucleotide transport and
metabolism]; Region: Pfs; COG0775"
/db_xref="CDD:31118"
gene 65606..65893
/locus_tag="Rsph17029_0055"
/db_xref="GeneID:4897175"
CDS 65606..65893
/locus_tag="Rsph17029_0055"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: rsp:RSP_1388 DNA-binding protein HU, form N"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_001041947.1"
/db_xref="GI:126460833"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:4897175"
/translation="MSKPMTKTQLVATLADEMGSDKKTANAALDAIASIVAREVAAGG
AVTLPGLGKVVCRERPERQVRNPATGEQVTKAADKQVKFTIAKALKDSVNA"
misc_feature 65621..65881
/locus_tag="Rsph17029_0055"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(65621..65626,65633..65635,65642..65644,65654..65656,
65696..65698,65705..65710,65717..65722,65732..65746,
65753..65758,65771..65773,65837..65842,65852..65854,
65858..65860,65879..65881)
/locus_tag="Rsph17029_0055"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(65621..65629,65693..65695,65738..65740,65744..65746,
65750..65755,65762..65764,65774..65776,65780..65785,
65789..65791,65798..65809,65837..65839,65849..65851,
65855..65857,65864..65866)
/locus_tag="Rsph17029_0055"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 65963..66844
/locus_tag="Rsph17029_0056"
/db_xref="GeneID:4897733"
CDS 65963..66844
/locus_tag="Rsph17029_0056"
/note="PFAM: protein of unknown function DUF6,
transmembrane;
KEGG: rsp:RSP_1390 putative transporter, DMT superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041948.1"
/db_xref="GI:126460834"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4897733"
/translation="MDLRSIGMGLAFAFMWSSAFASARIIVAQAPPLSALSLRFLCSG
LIALALGAALGQSARLSPAQWRGVVIFGLCQNALYLGLNFVAMRWVSASFAAIVASTM
PLLVALAGWIFLHERLRPVTALGLLAGMAGVALIMGTRLSGGEDALGFLLCAAGVIAL
TAATLTVRVASSGGNLLMIVGLQMLVGSAALAPAALLTETPLEVQWSGSLVAAFAYTT
LVPGLLATWVWFLLVGRIGAVRGATFHFLNPFFGVAVAAVLLGERMGIWDVAGVVVIA
AGILAVQLSRVPEAARR"
misc_feature <66146..66328
/locus_tag="Rsph17029_0056"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(66841..67941)
/locus_tag="Rsph17029_0057"
/db_xref="GeneID:4897234"
CDS complement(66841..67941)
/locus_tag="Rsph17029_0057"
/EC_number="4.2.3.5"
/note="catalyzes the formation of chorismate from
5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino
acid biosynthesis"
/codon_start=1
/transl_table=11
/product="chorismate synthase"
/protein_id="YP_001041949.1"
/db_xref="GI:126460835"
/db_xref="InterPro:IPR000453"
/db_xref="GeneID:4897234"
/translation="MSYNTFGHIFRVTTWGESHGPALGATVDGCPPGVAIEAEAIQHW
LDRRKPGQNRFTTQRQEPDAVRILSGTFEGRSTGTPIQLMIENTDQRSKDYGEIARSF
RPGHADIAYHWKYGLRDYRGGGRSSARETAARVAAGGVARAALAALVPGLRIEGYMVQ
IGPHAIDRARFDADEIERNPFWCPDSDTAALWADYLDGLRKAHDSVGAIVEVRASGVP
AGLGAPIYGKLDSDLAAAMMTINAVKGVEIGEGMAAACLTGSANADEIRMGPEGPEFL
TNHAGGILGGISTGQDVVVRFAVKPTSSILTPRRSVTTDGCEVEVVTKGRHDPCVGIR
AVPVGEAMMACVLLDHLLLDRGQTGGLRGTIG"
misc_feature complement(66892..67914)
/locus_tag="Rsph17029_0057"
/note="Chorismase synthase, the enzyme catalyzing the
final step of the shikimate pathway; Region:
Chorismate_synthase; cd07304"
/db_xref="CDD:143612"
misc_feature complement(order(66916..66918,67030..67032,67039..67050,
67054..67056,67075..67083,67087..67095,67102..67104,
67162..67167,67177..67182,67186..67191,67198..67212,
67219..67221,67225..67230,67234..67242,67249..67254,
67258..67260,67270..67278,67282..67284,67315..67332,
67345..67347,67540..67542,67564..67569,67597..67611,
67690..67692,67696..67698,67702..67704,67708..67713,
67732..67737,67741..67746,67843..67848,67858..67860,
67864..67866,67870..67872,67891..67911))
/locus_tag="Rsph17029_0057"
/note="Tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:143612"
misc_feature complement(order(66937..66939,66949..66951,67030..67038,
67042..67047,67216..67221,67546..67548,67555..67566,
67624..67629,67798..67800,67885..67887))
/locus_tag="Rsph17029_0057"
/note="active site"
/db_xref="CDD:143612"
misc_feature complement(order(66940..66942,66949..66951,66958..66960,
67030..67038,67042..67044,67216..67224,67561..67563,
67567..67569,67621..67629))
/locus_tag="Rsph17029_0057"
/note="FMN-binding site [chemical binding]; other site"
/db_xref="CDD:143612"
misc_binding 68054..68153
/note="TPP riboswitch (THI element) as predicted by Rfam
(RF00059), score 77.13"
/bound_moiety="thiamin/thiaminpyrophosphate"
gene 68188..69171
/gene="tbpA"
/locus_tag="Rsph17029_0058"
/db_xref="GeneID:4898027"
CDS 68188..69171
/gene="tbpA"
/locus_tag="Rsph17029_0058"
/note="part of the thiamine and TPP transport system
tbpA-thiPQ"
/codon_start=1
/transl_table=11
/product="thiamine transporter substrate binding subunit"
/protein_id="YP_001041950.1"
/db_xref="GI:126460836"
/db_xref="InterPro:IPR005948"
/db_xref="InterPro:IPR005967"
/db_xref="InterPro:IPR011587"
/db_xref="GeneID:4898027"
/translation="MRLPIVASCVALAAGTAAAETPVLTVLTYDSFTSEWGPGPAVEK
AFEETCACDLRFVAAGDGAALLARLQLEGARSEADVVLGLDTNLTAAAAATGLFAPHG
VSTPLDLPVAWEDPLFLPFDWGWFAFVHDRRMEDVPASFEELAASDSKIVIQDPRSST
PGLGLLMWVKAAYGDRAPEIWEGLADNIVTVTPGWSEAYGLFMEGEADMVLSYTTSPA
YHLIAEEDDTKTAAAFREGHYLQVEVAGKLAATDQPELADRFMAFLLEEPVQSVLPTT
NWMYPAKLPAAGLPEGFETLVQPETSLLLSADEALALRPEALAEWQDALAR"
misc_feature 68245..69168
/gene="tbpA"
/locus_tag="Rsph17029_0058"
/note="ABC-type thiamine transport system, periplasmic
component [Coenzyme metabolism]; Region: TbpA; COG4143"
/db_xref="CDD:33896"
misc_feature 68245..69168
/gene="tbpA"
/locus_tag="Rsph17029_0058"
/note="thiamine transporter substrate binding subunit;
Provisional; Region: tbpA; PRK11205"
/db_xref="CDD:183039"
gene 69147..70661
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/db_xref="GeneID:4897398"
CDS 69147..70661
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="permease; with TbpA and ThiQ functions in transport
of thiamine and thiamine pyrophosphate into the cell;
repressed in presence of exogenous thiamine"
/codon_start=1
/transl_table=11
/product="thiamine transporter membrane protein"
/protein_id="YP_001041951.1"
/db_xref="GI:126460837"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR005384"
/db_xref="GeneID:4897398"
/translation="MARRAGALIVAAALAALTLGPLALVMARAGGGALGPADWAAVRF
TVLQAALSAVVSVLLAVPVARALARRTFPGRRLMIALLGAPFLLPVIVAVLGLIAVFG
RAGLLNRGLEAVGLPALSIYGLHGVVLAHVFFNMPFAVRLILQGWLAIPSERFRLAAA
LGFRPADVARHLEWPMLRAVVPGVALVVFVICLSSFAVALTLGGGPRATTVELAIYQA
LRFEFDLGRAALLAALQFALCGAAVLATGVLSLPSAFGAGLDRAPVPLAPGGWRRGAD
GMALALAAAFLLLPLGMVAARGAPGLLHLPSDVWAAAARSLAVALPSAALSVTGALVL
ALAGPRFGLVATLPLAASSLVLGTGLFLAVHPVLNPTLVALPVTMLVNATLTLPFAYR
ILAPEARALEADYGRLAAALGLGGMARLRWLTLPRLRRPLGFALGVASALAMGDLGVI
ALFAAEGGATLPLLVQRLMGAYRLEEAAGAALLLVLTSFALFWIFDRGGRHAAS"
misc_feature 69222..70658
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="thiamine transporter membrane protein; Reviewed;
Region: thiP; PRK09433"
/db_xref="CDD:181853"
misc_feature 69360..69776
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(69378..69389,69393..69422,69429..69434,69438..69440,
69540..69545,69552..69554,69558..69560,69567..69572,
69576..69578,69588..69593,69600..69602,69651..69653,
69693..69698,69705..69707,69726..69737,69744..69749)
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(69396..69440,69726..69743)
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(69438..69440,69525..69527,69744..69746)
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(69603..69641,69657..69662,69672..69674)
/gene="thiP"
/locus_tag="Rsph17029_0059"
/gene_synonym="sfuB"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 70648..71343
/locus_tag="Rsph17029_0060"
/db_xref="GeneID:4897481"
CDS 70648..71343
/locus_tag="Rsph17029_0060"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: rsp:RSP_1393 ABC thiamine transporter, ATPase
subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001041952.1"
/db_xref="GI:126460838"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4897481"
/translation="MLHLDRLLIRQGDFTLRADATACAGERIAVIGPSGGGKSTLLMA
IAGFLAPAEGRILWQGRDLGPLGPGERPVSLLFQDQNLFPHLTLRENLGLGISPALRL
AAGDRARIAEALERVGLAGLGEAKPGRLSGGQQGRAALARALLRARPILLLDEPFAAL
GPALKAEMLALVSEIAAETGATVLMVTHDPEDARRFAHRTILVADGRAEAPQPTAALF
ADPPPALRAYLGP"
misc_feature 70648..71337
/locus_tag="Rsph17029_0060"
/note="ABC-type thiamine transport system, ATPase
component [Coenzyme metabolism]; Region: ThiQ; COG3840"
/db_xref="CDD:33632"
misc_feature 70651..71283
/locus_tag="Rsph17029_0060"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 70741..70764
/locus_tag="Rsph17029_0060"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(70750..70755,70759..70767,70879..70881,71107..71112,
71209..71211)
/locus_tag="Rsph17029_0060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 70870..70881
/locus_tag="Rsph17029_0060"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 71035..71064
/locus_tag="Rsph17029_0060"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 71095..71112
/locus_tag="Rsph17029_0060"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 71119..71130
/locus_tag="Rsph17029_0060"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 71197..71217
/locus_tag="Rsph17029_0060"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(71393..72250)
/locus_tag="Rsph17029_0061"
/db_xref="GeneID:4897547"
CDS complement(71393..72250)
/locus_tag="Rsph17029_0061"
/note="PFAM: cytochrome c1;
KEGG: rsp:RSP_1394 cytochrome c1 precursor"
/codon_start=1
/transl_table=11
/product="cytochrome c1"
/protein_id="YP_001041953.1"
/db_xref="GI:126460839"
/db_xref="InterPro:IPR002326"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:4897547"
/translation="MIRKLTLTAATALALSGGAAMAAGGGHVEDVPFSFEGPFGTFDQ
HQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQFTVTDEETGED
REGKPTDHFPHSALENAPDLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLTGF
PEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEY
ADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTNKRLWAG
VKGKKKTNV"
misc_feature complement(71420..72154)
/locus_tag="Rsph17029_0061"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene complement(72268..73605)
/locus_tag="Rsph17029_0062"
/db_xref="GeneID:4897640"
CDS complement(72268..73605)
/locus_tag="Rsph17029_0062"
/note="PFAM: Cytochrome b/b6, N-terminal domain;
Cytochrome b/b6, C-terminal domain;
KEGG: rsp:RSP_1395 cytochrome b"
/codon_start=1
/transl_table=11
/product="cytochrome b/b6 domain-containing protein"
/protein_id="YP_001041954.1"
/db_xref="GI:126460840"
/db_xref="InterPro:IPR005797"
/db_xref="InterPro:IPR005798"
/db_xref="GeneID:4897640"
/translation="MSGIPHDHYEPRTGIEKWLHSRLPIVALAYDTIMIPTPRNLNWM
WIWGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGAS
LFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGAT
VITGLFGAIPGIGHSIQTWLLGGPAVDNATLNRFFSLHYLLPFVIAALVAIHIWAFHS
TGNNNPTGVEVRRTSKAEAQKDTVPFWPYFIIKDVFALAVVLLVFFAIVGFMPNYLGH
PDNYIEANPLSTPAHIVPEWYFLPFYAILRAFTADVWVVQIANFISFGIIDAKFFGVL
AMFGAILVMALVPWLDTSPVRSGRYRPMFKIYFWLLAADFVILTWVGAQQTTFPYDWI
SLLASAYWFAYFLVILPILGAIEKPVAPPATIEEDFNAHYSPATGGTKTVVAE"
misc_feature complement(72361..73509)
/locus_tag="Rsph17029_0062"
/note="cytochrome b; Provisional; Region: CYTB; MTH00119"
/db_xref="CDD:177180"
misc_feature complement(72940..73509)
/locus_tag="Rsph17029_0062"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature complement(order(72940..72942,73096..73098,73120..73125,
73135..73155,73165..73167,73195..73200,73207..73209,
73216..73221,73228..73233,73243..73260,73279..73281,
73288..73293,73297..73302,73306..73311,73318..73323,
73330..73332,73375..73377,73447..73449,73456..73461,
73468..73473,73489..73497,73507..73509))
/locus_tag="Rsph17029_0062"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature complement(order(72952..72957,73234..73236,73318..73320,
73327..73335,73339..73353,73360..73365,73372..73377,
73402..73407,73414..73416,73426..73428,73489..73491,
73498..73500,73504..73509))
/locus_tag="Rsph17029_0062"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature complement(order(72940..72945,72958..72960,72967..72972,
72979..72981,73198..73203,73207..73212,73219..73224,
73264..73266,73270..73275,73282..73284,73294..73296,
73450..73455,73459..73464,73471..73473))
/locus_tag="Rsph17029_0062"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(72943..72945,72967..72969,73450..73452,
73459..73461))
/locus_tag="Rsph17029_0062"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(order(73000..73002,73009..73014,73156..73161,
73165..73170,73177..73182,73303..73305,73312..73317,
73324..73326,73366..73368,73399..73401,73408..73413,
73417..73422,73429..73434,73441..73443))
/locus_tag="Rsph17029_0062"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature complement(order(73015..73017,73024..73026,73108..73110,
73120..73125,73132..73134,73171..73176,73183..73188,
73195..73197))
/locus_tag="Rsph17029_0062"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature complement(72418..72894)
/locus_tag="Rsph17029_0062"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature complement(order(72526..72531,72544..72549,72763..72768,
72775..72777,72793..72795,72799..72804,72811..72816,
72823..72825,72832..72837,72844..72846,72853..72858,
72862..72870,72877..72894))
/locus_tag="Rsph17029_0062"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature complement(order(72556..72558,72562..72570,72574..72579,
72586..72588,72616..72618,72715..72726,72730..72732,
72739..72747,72751..72765,72769..72774,72778..72780,
72793..72795,72802..72810,72814..72819,72829..72831,
72838..72843,72850..72855,72862..72864,72874..72876,
72880..72888))
/locus_tag="Rsph17029_0062"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature complement(order(72850..72852,72874..72876))
/locus_tag="Rsph17029_0062"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature complement(order(72598..72600,72700..72705,72712..72714,
72721..72726,72730..72732))
/locus_tag="Rsph17029_0062"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene complement(73616..74179)
/locus_tag="Rsph17029_0063"
/db_xref="GeneID:4897603"
CDS complement(73616..74179)
/locus_tag="Rsph17029_0063"
/EC_number="1.10.2.2"
/note="KEGG: rsp:RSP_1396 ubiquinol-cytochrome c
reductase, iron-sulfur protein;
TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur
subunit;
PFAM: Rieske [2Fe-2S] domain protein"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase, iron-sulfur
subunit"
/protein_id="YP_001041955.1"
/db_xref="GI:126460841"
/db_xref="InterPro:IPR005805"
/db_xref="InterPro:IPR005806"
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR006317"
/db_xref="GeneID:4897603"
/translation="MSNAEDHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADV
QALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNAN
IDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAG
RIRKGPAPENLPIPLAKFIDETTIQLG"
misc_feature complement(74057..74179)
/locus_tag="Rsph17029_0063"
/note="Ubiquitinol-cytochrome C reductase Fe-S subunit TAT
signal; Region: UCR_Fe-S_N; pfam10399"
/db_xref="CDD:150981"
misc_feature complement(73619..74152)
/locus_tag="Rsph17029_0063"
/note="ubiquinol-cytochrome c reductase, iron-sulfur
subunit; Region: Rieske_proteo; TIGR01416"
/db_xref="CDD:188138"
misc_feature complement(73619..74035)
/locus_tag="Rsph17029_0063"
/note="Iron-sulfur protein (ISP) component of the bc(1)
complex family, Rieske domain; The Rieske domain is a
[2Fe-2S] cluster binding domain involved in electron
transfer. The bc(1) complex is a multisubunit enzyme found
in many different organisms including...; Region:
Rieske_cytochrome_bc1; cd03470"
/db_xref="CDD:58540"
misc_feature complement(order(73718..73720,73724..73726,73733..73735,
73784..73789,73793..73795))
/locus_tag="Rsph17029_0063"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58540"
gene complement(74685..75293)
/locus_tag="Rsph17029_0064"
/db_xref="GeneID:4895546"
CDS complement(74685..75293)
/locus_tag="Rsph17029_0064"
/note="KEGG: rsp:RSP_1397 glutathione S-transferase"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_001041956.1"
/db_xref="GI:126460842"
/db_xref="GeneID:4895546"
/translation="MRLYASATSPFVRKVDVVLHETGLFGKVERILSGGTPVDPGNLP
LALNPLGKIPVLARDDGPALYDSRVICRYLDSVANAGLYPAPPRLWDALTLEATADGI
LEAAVLMVYESRIRPEEKRHEPWVEGQWSKIARALEAVEARWMSQLQGPLDIGQIAMG
CALDYLDFRHGPRDWRAARPLLAEWAGSFSQRSSMLATVPVA"
misc_feature complement(74694..75293)
/locus_tag="Rsph17029_0064"
/note="putative glutathione S-transferase; Provisional;
Region: PRK10357"
/db_xref="CDD:182405"
misc_feature complement(75069..75293)
/locus_tag="Rsph17029_0064"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
misc_feature complement(74694..75020)
/locus_tag="Rsph17029_0064"
/note="C-terminal, alpha helical domain of an unknown
subfamily 6 of Glutathione S-transferases; Region:
GST_C_6; cd03205"
/db_xref="CDD:198314"
misc_feature complement(order(74877..74879,74886..74891,74898..74900,
74910..74912,74919..74921,74928..74939,74943..74945,
74958..74963,74982..74984,74991..74996,75000..75008,
75012..75017))
/locus_tag="Rsph17029_0064"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198314"
misc_feature complement(order(74694..74705,74709..74714,74724..74726,
74799..74801,74811..74813,74820..74825,74832..74834,
74961..74963,74982..74987,74994..74996,75006..75008))
/locus_tag="Rsph17029_0064"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198314"
misc_feature complement(order(74799..74801,74808..74810,74967..74972,
74979..74984,74994..74996))
/locus_tag="Rsph17029_0064"
/note="putative substrate binding pocket (H-site)
[chemical binding]; other site"
/db_xref="CDD:198314"
gene complement(75298..75591)
/locus_tag="Rsph17029_0065"
/db_xref="GeneID:4895445"
CDS complement(75298..75591)
/locus_tag="Rsph17029_0065"
/note="KEGG: rsp:RSP_6156 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041957.1"
/db_xref="GI:126460843"
/db_xref="GeneID:4895445"
/translation="MPLPLVPLAAFALRTGAVAGAVWLVRRALVPGRTDQRAEDALDD
LGEGLSLHRPADRALEGARQTNAAGRFRRTLTWAGGGVEIDAAWLARLRIRRT"
gene complement(75722..75847)
/gene="rpmJ"
/locus_tag="Rsph17029_0066"
/db_xref="GeneID:4895190"
CDS complement(75722..75847)
/gene="rpmJ"
/locus_tag="Rsph17029_0066"
/note="smallest protein in the large subunit; similar to
what is found with protein L31 and L33 several bacterial
genomes contain paralogs which may be regulated by zinc;
the protein from Thermus thermophilus has a zinc-binding
motif and contains a bound zinc ion; the proteins in this
group do not have the motif"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="YP_001041958.1"
/db_xref="GI:126460844"
/db_xref="InterPro:IPR000473"
/db_xref="GeneID:4895190"
/translation="MKVANSLRSLKLRHRDCQVVRRKGRVYVINKTQKRYKARQG"
misc_feature complement(75725..75847)
/gene="rpmJ"
/locus_tag="Rsph17029_0066"
/note="50S ribosomal protein L36; Validated; Region: rpmJ;
PRK00831"
/db_xref="CDD:179138"
gene complement(75917..75991)
/locus_tag="Rsph17029_R0001"
/note="tRNA-Val2"
/db_xref="GeneID:4895498"
tRNA complement(75917..75991)
/locus_tag="Rsph17029_R0001"
/product="tRNA-Val"
/db_xref="GeneID:4895498"
gene 76144..77004
/locus_tag="Rsph17029_0067"
/db_xref="GeneID:4895658"
CDS 76144..77004
/locus_tag="Rsph17029_0067"
/note="PFAM: N-formylglutamate amidohydrolase;
KEGG: rsp:RSP_1399 hypothetical protein"
/codon_start=1
/transl_table=11
/product="N-formylglutamate amidohydrolase"
/protein_id="YP_001041959.1"
/db_xref="GI:126460845"
/db_xref="InterPro:IPR007709"
/db_xref="GeneID:4895658"
/translation="MTPEAYSLIRPERRDTSVIFSSPHSGRDYPASLVGRTILDERML
RSSEDAFVDELFSCAPRLGAPLLMARVPRAYVDMNRSADEMDPALIEGISRAPHNPRV
SSGLGVIPRVVANGRPIYRGKMPLAEAEARIARYWTPYHQALRTLIDESQALFDEAVL
VDCHSMPHEAIETHARPGQPTPEVVLGDRFGAAASRAVVDRIEAAFVSAGLRVVRNAP
FAGAYIAQAYGRPSRNQHVVQVEVDRSLYMDEARIERSARFPAFAALMTSVVAEITGI
GRPALPLAAE"
misc_feature 76186..76890
/locus_tag="Rsph17029_0067"
/note="N-formylglutamate amidohydrolase; Region: FGase;
pfam05013"
/db_xref="CDD:203151"
gene complement(77008..78261)
/locus_tag="Rsph17029_0068"
/db_xref="GeneID:4895572"
CDS complement(77008..78261)
/locus_tag="Rsph17029_0068"
/EC_number="2.7.7.7"
/note="involved in translesion DNA polymerization with
beta clamp of polymerase III; belongs to Y family of
polymerases; does not contain proofreading function"
/codon_start=1
/transl_table=11
/product="DNA polymerase IV"
/protein_id="YP_001041960.1"
/db_xref="GI:126460846"
/db_xref="InterPro:IPR001126"
/db_xref="GeneID:4895572"
/translation="MPALCRDCLTPFDGGTRCPACRSPRVTAHPELFSLSIAHMDCDA
FYASVEKRDDPSLRDKPLIVGGGSRGVVSTCCYIARISGVRSAMPMFQALKLCPEATV
VKPRIDVYAGVSRQIRAMMEDLTPAIEPLSLDEAFLDLSGTERLHGAPPAVLLARLLR
RMEEELGITGSVGLSHNKFLAKIASDLDKPRGFSVIGRAETDAFLRKKPVRIIWGVGT
ATQSALERAGIRTIEDLLRWEKADLVARFGQTGERLWHLARGEDRRRVSADHALKSVS
KETTFHEDTADPEILDGHLWRLAEQVSDRAKARGLSGRTVTLKLKRTDFALVTRRHAL
AGPTQSADRIYREARALFDGARTAGPFRLIGVGISDLAGAAEADLTGDLLDPNAGRRI
AAERATDAIRARFGHDAIIKGRSLR"
misc_feature complement(77011..78261)
/locus_tag="Rsph17029_0068"
/note="DNA polymerase IV; Provisional; Region: PRK02794"
/db_xref="CDD:179473"
misc_feature complement(77149..78147)
/locus_tag="Rsph17029_0068"
/note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa;
cd03586"
/db_xref="CDD:176459"
misc_feature complement(order(77695..77697,77860..77862,78022..78024,
78031..78033,78040..78045,78124..78132,78136..78141))
/locus_tag="Rsph17029_0068"
/note="active site"
/db_xref="CDD:176459"
misc_feature complement(order(77152..77154,77161..77163,77173..77178,
77263..77265,77269..77280,77347..77349,77422..77445,
77512..77517,77602..77622,77716..77718,77857..77862,
77866..77868,77995..77997,78064..78066))
/locus_tag="Rsph17029_0068"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176459"
gene 78388..79269
/locus_tag="Rsph17029_0069"
/db_xref="GeneID:4895350"
CDS 78388..79269
/locus_tag="Rsph17029_0069"
/note="PFAM: band 7 protein;
KEGG: rsp:RSP_1401 band 7 protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041961.1"
/db_xref="GI:126460847"
/db_xref="InterPro:IPR001107"
/db_xref="InterPro:IPR001972"
/db_xref="GeneID:4895350"
/translation="MDPADFIGGNAVLLALAAFLILCVFLGVRIVPQSQKHVVERFGR
LRAVLGPGINFVVPFLDVVAHKISVLERQLPNAMQDAITADNVLVKVETSVFYRITEP
EKTVYRIRDVDAAIATTVAGIVRSEIGKLELDQVQSNRADLIQKVREQVAAMVDDWGI
EVTRAEVLDVNLDDATRAAMLQQLNAERARRALVTEAEGRKRAVELNADAELYAAEQE
AKARRVLADAEAYATGVIAEAIRENGIEAAQYQVALKQVEALTAVGQGDAKQLIVVPA
SAMDAFADAFRMLKGRA"
misc_feature 78466..79257
/locus_tag="Rsph17029_0069"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:30678"
misc_feature 78478..79053
/locus_tag="Rsph17029_0069"
/note="Band_7_stomatin_like: A subgroup of the band 7
domain of flotillin (reggie) like proteins similar to
stomatin and podicin (two lipid raft-associated integral
membrane proteins). Individual proteins of this band 7
domain family may cluster to form...; Region:
Band_7_stomatin_like; cd03403"
/db_xref="CDD:48215"
gene 79266..79535
/locus_tag="Rsph17029_0070"
/db_xref="GeneID:4895567"
CDS 79266..79535
/locus_tag="Rsph17029_0070"
/note="KEGG: rsp:RSP_6157 conserved hypoothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041962.1"
/db_xref="GI:126460848"
/db_xref="GeneID:4895567"
/translation="MIWSVWWIWVVAGLLLGIVEILVPGFVFLGFAVGAVAIGLLIWI
GLEAGLPLLLVLFALMSLAVWLALRRMFGLPSGSVKIWDRDINDN"
misc_feature 79275..>79388
/locus_tag="Rsph17029_0070"
/note="NfeD-like C-terminal, partner-binding; Region:
NfeD; cl00686"
/db_xref="CDD:242028"
gene 79844..80179
/locus_tag="Rsph17029_0071"
/db_xref="GeneID:4895388"
CDS 79844..80179
/locus_tag="Rsph17029_0071"
/note="KEGG: rsp:RSP_1403 conserved hypoothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041963.1"
/db_xref="GI:126460849"
/db_xref="GeneID:4895388"
/translation="MSDYRRDPTPNNRTTAERPVEGSASRTMWYVVGAVIVLLLVLWF
LFGGMSATNDATMTTPPAATTTTEPAAPPPATAPAPEATTPAPAEPAPEAAPATPAPD
ATAPAAPAQ"
gene complement(80184..80882)
/locus_tag="Rsph17029_0072"
/db_xref="GeneID:4895449"
CDS complement(80184..80882)
/locus_tag="Rsph17029_0072"
/EC_number="4.1.1.23"
/note="type 1 subfamily; involved in last step of
pyrimidine biosynthesis; converts orotidine 5'-phosphate
to UMP and carbon dioxide; OMP decarboxylase; OMPDCase;
OMPdecase"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_001041964.1"
/db_xref="GI:126460850"
/db_xref="InterPro:IPR001754"
/db_xref="GeneID:4895449"
/translation="MADDRLIVALDVPNVVQGLDLAERLGDAVSFYKIGLGMLTGGGL
ALANELKQEQGKRIFLDMKLFDIGATVEAAVRGFASYDLDFLTVHGDPQVVRAAVQGA
SGSGLRILAVTVLTSLDRADLDANMIRAGDLAEITLERAARALDAGAHGVIASPQEAA
AIRALPQAAGRLIVTPGVRPTGAALGDQKRVATPARAIADGADHIVVGRPIWQAGDPR
AAALAVQAELPTRG"
misc_feature complement(80211..80867)
/locus_tag="Rsph17029_0072"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature complement(order(80256..80261,80355..80357,80535..80540,
80694..80696,80700..80702,80778..80780,80784..80786,
80850..80852,80856..80858))
/locus_tag="Rsph17029_0072"
/note="active site"
/db_xref="CDD:73387"
misc_feature complement(order(80256..80258,80475..80477,80538..80540,
80583..80585,80616..80618,80661..80666,80673..80678,
80685..80690,80694..80699,80769..80774,80778..80780))
/locus_tag="Rsph17029_0072"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene 80986..81873
/locus_tag="Rsph17029_0073"
/db_xref="GeneID:4896852"
CDS 80986..81873
/locus_tag="Rsph17029_0073"
/note="PFAM: ROK family protein;
KEGG: rsp:RSP_1405 ROK family protein"
/codon_start=1
/transl_table=11
/product="ROK family protein"
/protein_id="YP_001041965.1"
/db_xref="GI:126460851"
/db_xref="InterPro:IPR000600"
/db_xref="GeneID:4896852"
/translation="MLIAFDIGGSRIRAARAFAPDDLEPLGERPMPLSFPGFVAALRD
LMPEEATSLAIAIAGVVDPDTGRITAANLPAVNQRALAADLCAALGRPVWIGNDADCF
VLTEALLGVGRGHRSVFGIILGSGVGGGIVLDGRLLTGAGGIAGEWGHAPVLDQRPLG
RDLPHLPCGCGQSGCVDTYGSARGIERLHLALCGQRLDSREILAAWRAGEMAAAETVE
VWLELVAGPLAMLVNVIGPSVVPVGGGLSNDGDLVAALDRAVRHRLLRPASETLLRPA
FHPEPGLVGAALAGLQALG"
misc_feature 80986..>81672
/locus_tag="Rsph17029_0073"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature 80992..>81321
/locus_tag="Rsph17029_0073"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(81001..81012,81016..81018,81022..81024,81277..81279)
/locus_tag="Rsph17029_0073"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(81887..82120)
/locus_tag="Rsph17029_0074"
/db_xref="GeneID:4896783"
CDS complement(81887..82120)
/locus_tag="Rsph17029_0074"
/note="KEGG: rsp:RSP_1406 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041966.1"
/db_xref="GI:126460852"
/db_xref="GeneID:4896783"
/translation="MRILSATIERAHYARDFGQVEATVALLVKDSARPVPYVRRIFTT
EPARGAAPLRERLIDSAKTLFLARYEPQVDRAA"
gene 82423..85035
/locus_tag="Rsph17029_0075"
/db_xref="GeneID:4896635"
CDS 82423..85035
/locus_tag="Rsph17029_0075"
/note="PFAM: AAA ATPase, central domain protein; Clp N
terminal domain protein; ATPase associated with various
cellular activities, AAA_5; ATPase AAA-2 domain protein;
SMART: AAA ATPase;
KEGG: rsp:RSP_1408 chaperone ClpB"
/codon_start=1
/transl_table=11
/product="ATPase"
/protein_id="YP_001041967.1"
/db_xref="GI:126460853"
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004176"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:4896635"
/translation="MNLEKFTERSRGFLQAAQTIAMRESHQRLAPEHLLKALMDDDQG
LASNLIRRSGGEPARVAETVELTIAKLPKVSGDAQPFMDPGLVRVLDEAEKLAKKAGD
SFVPVERILMALAMVASKAKDALDAGAVTAQKLNAAINDIRKGRTADTASAEEGYDAL
KKYARDLTQAARDGKIDPIIGRDDEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGL
ALRIVNGDVPESLKNKRLLSLDMGALIAGAKYRGEFEERLKAVLNEVTSAAGEIILFI
DEMHTLVGAGKSEGAMDAANLIKPALARGELHCIGATTLDEYRKHVEKDAALARRFQP
LMVEEPTVEDTISILRGIKEKYELHHGVKIADAALVAAATLSHRYITDRFLPDKAIDL
VDEAASRLRMEVDSKPEELDALDRQILQAQIEAEALKKEDDAASKDRLAKLEKELSGM
TERAAEMTAQWQAERDKLEAARDLKEQLDRARAELEQVKREGNLARAGELSYGVIPQI
EKKLEEAEAREGDLLVSEAVRPEQIAEVVERWTGIPTSKMLEGEREKLLKMEEELGRR
VIGQRAALRAVANAVRRARAGLNDERRPLGSFLFLGPTGVGKTELTKAVAEYLFDDDQ
AMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPE
VFNVLLQVLDDGVLTDGQGRTVDFKQTLIILTSNLGAYALSQLPEGADPAPARAAVME
AVRGHFRPEFLNRLDEMVIFDRLSRDDMGQIVEIQLGLLGKRLATRKIGLELDAAAKQ
WLADEGYDPVYGARPLKRVIQRHLQDPLAEMILAGDVLDGSVVQVSAGADGLIIGDRV
SSSRRERPQDAVVH"
misc_feature 82438..84972
/locus_tag="Rsph17029_0075"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 82471..82617
/locus_tag="Rsph17029_0075"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 82699..82854
/locus_tag="Rsph17029_0075"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 82960..83421
/locus_tag="Rsph17029_0075"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 83035..83058
/locus_tag="Rsph17029_0075"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(83038..83061,83251..83253,83362..83364)
/locus_tag="Rsph17029_0075"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 83239..83256
/locus_tag="Rsph17029_0075"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 83413..83415
/locus_tag="Rsph17029_0075"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 84193..84570
/locus_tag="Rsph17029_0075"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 84226..84249
/locus_tag="Rsph17029_0075"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(84229..84252,84442..84444,84568..84570)
/locus_tag="Rsph17029_0075"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 84430..84447
/locus_tag="Rsph17029_0075"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 84709..84951
/locus_tag="Rsph17029_0075"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(85096..85566)
/locus_tag="Rsph17029_0076"
/db_xref="GeneID:4896937"
CDS complement(85096..85566)
/locus_tag="Rsph17029_0076"
/note="PFAM: beta-Ig-H3/fasciclin;
KEGG: rsp:RSP_1409 beta-Ig-H3/fasciclin"
/codon_start=1
/transl_table=11
/product="beta-Ig-H3/fasciclin"
/protein_id="YP_001041968.1"
/db_xref="GI:126460854"
/db_xref="InterPro:IPR000782"
/db_xref="GeneID:4896937"
/translation="MRKTLLALSLGLLAAPAFAETGDIVKTATGAGSFTTLLTAAEAA
GLVDTLKGEGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSS
DLTEGMTAETVEGGALTVTLEGGPKVNGVAISQPDVDASNGVIHVIDGVLMPGA"
misc_feature complement(85099..>85509)
/locus_tag="Rsph17029_0076"
/note="Secreted and surface protein containing
fasciclin-like repeats [Cell envelope biogenesis, outer
membrane]; Region: COG2335"
/db_xref="CDD:32486"
misc_feature complement(85105..85428)
/locus_tag="Rsph17029_0076"
/note="Fasciclin domain; Region: Fasciclin; pfam02469"
/db_xref="CDD:202249"
gene 85763..86668
/locus_tag="Rsph17029_0077"
/db_xref="GeneID:4895779"
CDS 85763..86668
/locus_tag="Rsph17029_0077"
/note="in Escherichia coli this periplasmic enzyme was
found to encode the periplasmic catalytic subunit of an
oxidoreductase; sulfite oxidase activity not demonstrated;
requires inner membrane anchor protein YedZ"
/codon_start=1
/transl_table=11
/product="putative sulfite oxidase subunit YedY"
/protein_id="YP_001041969.1"
/db_xref="GI:126460855"
/db_xref="InterPro:IPR000572"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:4895779"
/translation="MRRLGWSDVTPRADWLNRRQILAGAGALGLAGPAFARIEAKASR
FSTDEKPNSFEEISNYNNFYEFGLDKGDPAQNAGALTVDPWSVEIGGLVERPGAYPLD
DILKGVTLEERIYRLRCVEGWSMVVPWIGFELRTLLERAGVQPGARFVAFETLVRPEE
MPGVRSRILDWPYREGLRIDEAMHPLTILATGLYGEEMPKQNGAPIRLVVPWKYGFKS
IKSIVRISLVEKMPATSWNMQNAREYGFYSNVNPAVDHPRWSQASERRIGSGFFAPRI
ETQLFNGYGDQVAQLYAGQDLSVDF"
misc_feature 85763..86665
/locus_tag="Rsph17029_0077"
/note="TMAO/DMSO reductase; Reviewed; Region: PRK05363"
/db_xref="CDD:180039"
misc_feature 85934..86578
/locus_tag="Rsph17029_0077"
/note="Sulfite oxidase (SO) family, molybdopterin binding
domain. This molybdopterin cofactor (Moco) binding domain
is found in a variety of oxidoreductases, main members of
this family are nitrate reductase (NR) and sulfite oxidase
(SO). SO catalyzes the...; Region: SO_family_Moco;
cl00199"
/db_xref="CDD:206895"
misc_feature order(85940..85942,85946..85948,85952..85954,86117..86119,
86279..86281,86366..86368,86381..86383,86405..86407,
86414..86416,86420..86425)
/locus_tag="Rsph17029_0077"
/note="Moco binding site; other site"
/db_xref="CDD:29401"
misc_feature 86117..86119
/locus_tag="Rsph17029_0077"
/note="metal coordination site [ion binding]; other site"
/db_xref="CDD:29401"
gene 86669..87274
/locus_tag="Rsph17029_0078"
/db_xref="GeneID:4896057"
CDS 86669..87274
/locus_tag="Rsph17029_0078"
/note="in Escherichia coli this inner membrane protein was
found to anchor the periplasmic catalytic oxidoreductase
YedY; sulfite oxidase activity not demonstrated; contains
heme"
/codon_start=1
/transl_table=11
/product="putative sulfite oxidase subunit YedZ"
/protein_id="YP_001041970.1"
/db_xref="GI:126460856"
/db_xref="InterPro:IPR013130"
/db_xref="GeneID:4896057"
/translation="MIAQRINGALRPVPTGLVYAAGLLPLGLLVWQAATGGLGVDPVK
GIEHRLGELALQFLVGGLVISPLRWWTGINLIRFRRAVGLLAFFYVCLHLAVWLALDL
QFRWAEIGADIAKRPYITLGMLAFAAMIPLALTSNNGAIRRMGAAAWTRLHKLTYAVA
LLGALHFLLLVKAWPLEPILYMAGVVALLSMRLWRTLRRRA"
misc_feature 86669..87268
/locus_tag="Rsph17029_0078"
/note="putative sulfite oxidase subunit YedZ; Reviewed;
Region: PRK05419"
/db_xref="CDD:180066"
gene complement(87359..87685)
/locus_tag="Rsph17029_0079"
/db_xref="GeneID:4896004"
CDS complement(87359..87685)
/locus_tag="Rsph17029_0079"
/note="KEGG: rsp:RSP_3837 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041971.1"
/db_xref="GI:126460857"
/db_xref="GeneID:4896004"
/translation="MPSYRSNVTHKTVKLSPTSSPKLVSRYASGPPSKRPNRPHIPSS
SSMSKSTEDKTNRDASQPAIPSASSSRFPKASRQHSRLSTPSPSPFRFGEALSREPQK
NPQEEK"
gene 87772..89231
/locus_tag="Rsph17029_R0002"
/db_xref="GeneID:4896276"
rRNA 87772..89231
/locus_tag="Rsph17029_R0002"
/product="16S ribosomal RNA"
/db_xref="GeneID:4896276"
gene 89452..89528
/locus_tag="Rsph17029_R0003"
/note="tRNA-Ile1"
/db_xref="GeneID:4895383"
tRNA 89452..89528
/locus_tag="Rsph17029_R0003"
/product="tRNA-Ile"
/db_xref="GeneID:4895383"
gene 89576..89651
/locus_tag="Rsph17029_R0004"
/note="tRNA-Ala1"
/db_xref="GeneID:4896177"
tRNA 89576..89651
/locus_tag="Rsph17029_R0004"
/product="tRNA-Ala"
/db_xref="GeneID:4896177"
gene 89899..92816
/locus_tag="Rsph17029_R0005"
/db_xref="GeneID:4895269"
rRNA 89899..92816
/locus_tag="Rsph17029_R0005"
/product="23S ribosomal RNA"
/db_xref="GeneID:4895269"
gene 92914..93031
/locus_tag="Rsph17029_R0006"
/db_xref="GeneID:4896100"
rRNA 92914..93031
/locus_tag="Rsph17029_R0006"
/product="5S ribosomal RNA"
/db_xref="GeneID:4896100"
gene 93075..93151
/locus_tag="Rsph17029_R0007"
/note="tRNA-Met1"
/db_xref="GeneID:4896277"
tRNA 93075..93151
/locus_tag="Rsph17029_R0007"
/product="tRNA-Met"
/db_xref="GeneID:4896277"
gene complement(93400..94098)
/locus_tag="Rsph17029_0081"
/db_xref="GeneID:4895427"
CDS complement(93400..94098)
/locus_tag="Rsph17029_0081"
/note="KEGG: rsp:RSP_1433 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041973.1"
/db_xref="GI:126460859"
/db_xref="GeneID:4895427"
/translation="MHSLSERVEQLRLNDCPDWLYLLHEFDALYRQGSDGGSRPIRTH
RKRVRDSLALIVEANPAVNDRPPEVKPVTAHLGRALDLGERGAVQGMSRALARVAGRL
TWEYGYEKVPKALARKYAYCEILGPRGPICAERLILGFVLFAPSTTYPQHSHKDIEES
YISVAGAWSENDAAVHAPGSLILNRPGLEHRITTGDLSPCLLAYAWTGSEERLNQPGM
KLSSPRKARIEKGI"
gene complement(94118..95098)
/locus_tag="Rsph17029_0082"
/db_xref="GeneID:4896092"
CDS complement(94118..95098)
/locus_tag="Rsph17029_0082"
/note="PFAM: Alcohol dehydrogenase, zinc-binding domain
protein; Alcohol dehydrogenase GroES domain protein;
KEGG: rsp:RSP_1434 putative Zn-dependent oxidoreductase"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="YP_001041974.1"
/db_xref="GI:126460860"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:4896092"
/translation="MRAVLIEKSEDTQSVSVTELAEDQLPEGDVLVDVAYSTLNYKDA
LAITGKAPVVRRFPMVPGIDFTGTVAQSSHADFKPGDRVILNGWGVGEKHWGGLAERA
RVRGDWLVPLPAPLDLRQAAMIGTAGYTAMLCVLALERHGVMPGNGEIVVSGAAGGVG
SVATTLLAAKGYEVAAVTGRASEAEYLRGLGAASVIDRSELIGKVRPLGQERWAGGID
VAGSTVLANMLSMMKYRGVVAACGLAAGMDLPASVAPFILRGVTLAGVDSVMCPKADR
LAAWARLASDLDPAKLEEMTTELPFSEVIETAPKFLDGTVRGRIVIPVTP"
misc_feature complement(94127..95098)
/locus_tag="Rsph17029_0082"
/note="Yhdh putative quinone oxidoreductases; Region:
MDR_yhdh; cd08288"
/db_xref="CDD:176248"
misc_feature complement(94127..95095)
/locus_tag="Rsph17029_0082"
/note="putative quinone oxidoreductase, YhdH/YhfP family;
Region: oxido_YhdH; TIGR02823"
/db_xref="CDD:163033"
misc_feature complement(order(94151..94153,94157..94159,94166..94168,
94292..94303,94364..94378,94439..94444,94505..94507,
94559..94567,94622..94633,94637..94639,94709..94711,
94718..94723,94976..94981))
/locus_tag="Rsph17029_0082"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:176248"
misc_feature complement(order(94286..94291,94298..94321,94325..94333,
94337..94348,94352..94354,94370..94381,94397..94399,
94478..94480))
/locus_tag="Rsph17029_0082"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176248"
gene complement(95114..95773)
/locus_tag="Rsph17029_0083"
/db_xref="GeneID:4896250"
CDS complement(95114..95773)
/locus_tag="Rsph17029_0083"
/note="PFAM: regulatory protein, TetR;
KEGG: rsp:RSP_1435 regulatory protein TetR family"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001041975.1"
/db_xref="GI:126460861"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4896250"
/translation="MPLTDTPPSVPQKPRRGRPRGAPDASLAHQSLIRAGLEHLTEKG
YSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPL
ARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLF
REAQACGELSANHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFVTRTQ
E"
misc_feature complement(95138..95686)
/locus_tag="Rsph17029_0083"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(95540..95680)
/locus_tag="Rsph17029_0083"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 96282..96911
/locus_tag="Rsph17029_0084"
/db_xref="GeneID:4895759"
CDS 96282..96911
/locus_tag="Rsph17029_0084"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: rsp:RSP_1436 ABC transporter, duplicated ATPase
domains"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001041976.1"
/db_xref="GI:126460862"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4895759"
/translation="MPASVSVSGLSWSTPDDAPLLADLNLTFGPERTGIVGRNGAGKS
TLLRLISGDLPPASGLVRVTGSIAMMRQEAMEQPDDIIADLFGVRPALDLLDRAEAGL
ADADDLGDADWTLPARMEGALLRCGLSVGPKTPLATLSGGQRSRAALAALILAEPDFL
LLDEPTNNLDRDGRKAVIDLLRGWTGGAIVASHDRELLDRSTRGCAGCL"
misc_feature 96354..96881
/locus_tag="Rsph17029_0084"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 96390..96413
/locus_tag="Rsph17029_0084"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(96399..96404,96408..96416,96507..96509,96768..96773,
96858..96860)
/locus_tag="Rsph17029_0084"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 96411..96782
/locus_tag="Rsph17029_0084"
/note="ABC transporter; Region: ABC_tran; pfam00005"
/db_xref="CDD:200922"
misc_feature 96504..96509
/locus_tag="Rsph17029_0084"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 96696..96725
/locus_tag="Rsph17029_0084"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 96756..96773
/locus_tag="Rsph17029_0084"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 96780..96791
/locus_tag="Rsph17029_0084"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 96846..96866
/locus_tag="Rsph17029_0084"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(96933..97337)
/locus_tag="Rsph17029_0085"
/db_xref="GeneID:4895613"
CDS complement(96933..97337)
/locus_tag="Rsph17029_0085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041977.1"
/db_xref="GI:126460863"
/db_xref="GeneID:4895613"
/translation="MGRIVVGARSGIRRPHSPAFEIRQHVAERGISVGGRPSGTSLPH
HANSRPVEIAAGRGFPFGLGRPALFRPLRRVSPARSGGLSVRDARSDRGLLPVAAPCP
ASRGGGRQRGRGGHAARSTVLSGASDPRNAAS"
gene complement(97368..98135)
/locus_tag="Rsph17029_0086"
/db_xref="GeneID:4895462"
CDS complement(97368..98135)
/locus_tag="Rsph17029_0086"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: rsp:RSP_1437 ABC Fe+3 hydroxamate (ferrichrome)
transporter, ATPase subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001041978.1"
/db_xref="GI:126460864"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4895462"
/translation="MTLFSIRDLSVDVPGRRLLEGISLDLPQGRVTGLIGHNGSGKST
LLKVLARQIEARGAVAFEGRALAGWSARDYARRLAFLPQTTPPAEGMLVRELVELGRY
PWHGALGRFGQQDETVVARAMAECGVERFADRLVDTLSGGERQRVWLAMMVAQQASTL
LLDEPISALDIAHAVEVMRLVRTMCREEGRSVVVVLHEVNMAAQFCDHIVALKQGQVV
LEGPPDELMTAERLQQIYSVRMEVLHRADGQRVAVPA"
misc_feature complement(97380..98132)
/locus_tag="Rsph17029_0086"
/note="iron-hydroxamate transporter ATP-binding subunit;
Provisional; Region: PRK10575"
/db_xref="CDD:182561"
misc_feature complement(97473..98123)
/locus_tag="Rsph17029_0086"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(98007..98030)
/locus_tag="Rsph17029_0086"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(97545..97547,97644..97649,97887..97889,
98004..98012,98016..98021))
/locus_tag="Rsph17029_0086"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(97887..97898)
/locus_tag="Rsph17029_0086"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(97692..97721)
/locus_tag="Rsph17029_0086"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(97644..97661)
/locus_tag="Rsph17029_0086"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(97626..97637)
/locus_tag="Rsph17029_0086"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(97539..97559)
/locus_tag="Rsph17029_0086"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(98132..100108)
/locus_tag="Rsph17029_0087"
/db_xref="GeneID:4895346"
CDS complement(98132..100108)
/locus_tag="Rsph17029_0087"
/note="part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter involved in the high-affinity
transport of Fe(3+)-ferrichrome"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter permease subunit"
/protein_id="YP_001041979.1"
/db_xref="GI:126460865"
/db_xref="InterPro:IPR000522"
/db_xref="GeneID:4895346"
/translation="MSRPAQLALAGVGLLAAALWAWAAVGLLPLGSWPPLPFRAEAMS
LEQILLAFGLMPRGTVALLAGAALGLSGALLQTVLRNPVADPTTLGISSGAQLALVLS
TIFAPTLLVDGRWPVAMAGAALAAALVLAVGARRAFAPVTMVIVGMLVSLTASAIATA
LTLAQGEYLLSLVIWNGGSLVQQDWSGVRALALVLASGGLAAALLARPLRVLSLGAEG
AASLGLRVAAVRLAGIAVAVILAGSVSAELGLIGFVGLAGPALARSLGARTIPERLLL
SSLIGALLLSLCDGVVLTVAGASGEMFPTGALTGLIGGPLLIWLLPRLRGSTPPGTEA
AEGPAVRLARPRPVLLALAATLVAVSLALVWIGRVPGGWVILDTQSFADFLPMRLPRL
IAAASAGAALATAGALLQRLTGNPLASPEVLGVSGGAALGYALAIYLVVAPTAPLLHA
ATMAGGVIALALVAAYLLRREMPAERILLAGIAVSALASAVLSAMMASGDARSWAVLA
WLSGSSSAVLMPGALALAAVALTLWAAALATARWLAILPLGPGVAGGLGLPLRRARVA
LILLAGLATGAATVLVGPLSFVGLMAPHMARRAGLARPAHHVTGAALIGALLMLLADF
GARVAGFPYELPLGLFASLIGAPWLLWLLMRANR"
misc_feature complement(98135..99997)
/locus_tag="Rsph17029_0087"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(99305..99883)
/locus_tag="Rsph17029_0087"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(99320..99322,99443..99451,99455..99472,
99476..99481,99485..99493,99497..99502,99863..99871,
99881..99883))
/locus_tag="Rsph17029_0087"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(99350..99352,99578..99580,99587..99592,
99623..99625,99629..99634,99641..99643,99650..99655,
99662..99667,99674..99679,99683..99685,99845..99847,
99860..99862,99866..99868))
/locus_tag="Rsph17029_0087"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(99362..99364,99374..99376,99548..99550,
99623..99625))
/locus_tag="Rsph17029_0087"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature complement(98144..>98359)
/locus_tag="Rsph17029_0087"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:207058"
gene complement(100105..101004)
/locus_tag="Rsph17029_0088"
/db_xref="GeneID:4896279"
CDS complement(100105..101004)
/locus_tag="Rsph17029_0088"
/note="PFAM: periplasmic binding protein;
KEGG: rsp:RSP_1439 ABC Fe+3 hydroxamate (ferrichrome)
transporter, periplasmic siderophore binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein"
/protein_id="YP_001041980.1"
/db_xref="GI:126460866"
/db_xref="InterPro:IPR002491"
/db_xref="InterPro:IPR008091"
/db_xref="GeneID:4896279"
/translation="MVGGGALSRRSFLAAASLALAAASSLRAAPPVAPRLAAIDWAML
ETAIALGHMPVAACELIRFRKDAPEPPVPEGVVDLGLRGAPNFELLQLVRPDLILTSP
YYTRYEARLSQLAPVLNLPFYIRGEPPLPKTFAALHNLARAIDDPGAALRAEEAAEAR
FDAVAADLAPMADRPICLVNIGDARHLRAFGFDSLFGSVATRLGLTNGWEGQTRFSFL
APVQIEELARLPEARVVIVGEIPVQARRGLARSKLWQALPAVRGGRVYQLPEVNAFGG
LPSALRFARMLGAALTRPAELRL"
misc_feature complement(100153..100890)
/locus_tag="Rsph17029_0088"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:29749"
misc_feature complement(100192..100890)
/locus_tag="Rsph17029_0088"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature complement(order(100441..100443,100693..100695,
100756..100761,100807..100809))
/locus_tag="Rsph17029_0088"
/note="siderophore binding site; other site"
/db_xref="CDD:29749"
gene complement(100998..103097)
/locus_tag="Rsph17029_0089"
/db_xref="GeneID:4895258"
CDS complement(100998..103097)
/locus_tag="Rsph17029_0089"
/note="TIGRFAM: TonB-dependent siderophore receptor;
PFAM: TonB-dependent receptor; TonB-dependent receptor,
plug;
KEGG: rsp:RSP_1440 TonB dependent, hydroxamate-type
ferrisiderophore, outer membrane receptor"
/codon_start=1
/transl_table=11
/product="TonB-dependent siderophore receptor"
/protein_id="YP_001041981.1"
/db_xref="GI:126460867"
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR010105"
/db_xref="InterPro:IPR012910"
/db_xref="GeneID:4895258"
/translation="MKTKHRSMLLAGASTIALAPAALFAQEAIELDAIVVTATTDVTT
QADGYKADYNQSATKSDTPVAETTQSVSVVTAEQIKDQGAETLGQALRYSPGVLGDPY
GVDPRFDSPTIRGFEARGSQYVNGLRQLRYMGAPAYETFALQQIEVLNGPNSSLYGAG
SPAGIINQVQKRAQGFDFGELGVGLDDNGSRQSFFDWNRTVSDTLSFRATGIAKDYES
QVEEIGLERGYLGLAARWKPTDRTTLDIISSYTDDAPTSPPGIPFALTGQGNDKYLRE
LYTGEPGWDDHDRQIFNIGYELSHEFDSGWTFSQGFRYEKFDWEYTGHYVTGIDASGT
GITRGANYQRENTTGLSLDSRLAGEVLTGGMEHKLLFGLDLRKYDADTVTEFYNATGG
VTNLDWRNPIYGGVPTGAPWYVSTPDVTQTQIGLYAQDEITAGRWRGSIALRHDWSKQ
EGTTYTNFAGEGEIDQSDKALSGRAGLGYEIAPGALVYANYSTSFDPEIGVDGAGEQL
EPTTGKQWELGVKYQPDSFNALFTAAIYDLRQENLTVNLGGAEGRRQVGEVKSSGLEL
GAVGELAPGLNLRASYAYNDTEQVDPSGANDGNEMPNAPRHLASLWLDKAFDNGVSLG
GGLRYIGEREGDLANLYSLDSVTLLDLAVGYSRENMEASINLNNLSDEVYLANCGSFG
CYYGEGRTISAKISYKW"
misc_feature complement(101001..102956)
/locus_tag="Rsph17029_0089"
/note="ferrichrome receptor precursor protein;
Provisional; Region: PRK14050"
/db_xref="CDD:172542"
misc_feature complement(101001..102890)
/locus_tag="Rsph17029_0089"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature complement(order(102588..102614,102648..102680,
102711..102734,102750..102767,102804..102833,
102861..102890))
/locus_tag="Rsph17029_0089"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature complement(order(102063..102065,102141..102143))
/locus_tag="Rsph17029_0089"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene 103424..104557
/locus_tag="Rsph17029_0090"
/db_xref="GeneID:4895220"
CDS 103424..104557
/locus_tag="Rsph17029_0090"
/note="PFAM: ROK family protein; transcriptional regulator
TrmB;
KEGG: rsp:RSP_1441 regulatory protein, GntR family"
/codon_start=1
/transl_table=11
/product="ROK family protein"
/protein_id="YP_001041982.1"
/db_xref="GI:126460868"
/db_xref="InterPro:IPR000600"
/db_xref="InterPro:IPR002831"
/db_xref="GeneID:4895220"
/translation="MTLTGSALAVLRALVERGPSTRPQLGQDLGLSRPTMSAAMAELM
EAGLVEPIGSVQGGMGRRAVEYRVATHAGHVIAVDAGSTHIRLRLSTLDRRLLHASLH
PLPNSQYSLTPQISSVVADAVAEALEKTEADWGPLLAMVIAIPTRVVGPEGDTAATDQ
EVIFTNFTPPPQVDCTLVNNVNCAAVAEYHYGAARGHQTFAFLQVGVKIGLGLMLNGQ
ILPGVNGAAGEIGHITFPFAPGLTPVPGEAERYIGTEAFMARVRADWPESSGRPPADT
YELLARAGEGDAAALRHVEGHAAEIGAVIAICVSVIDPGLVVLGGGYGASPLLRPKVE
EVVRHLAFPAEITTSTLAAEATVLGAERLAVDRAVSVLLGLPA"
misc_feature 103430..>103654
/locus_tag="Rsph17029_0090"
/note="Transcriptional regulators [Transcription]; Region:
MarR; COG1846"
/db_xref="CDD:32031"
misc_feature 103445..>103573
/locus_tag="Rsph17029_0090"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(103484..103492,103517..103528,103532..103537,
103544..103549,103553..103558)
/locus_tag="Rsph17029_0090"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(103484..103486,103493..103495)
/locus_tag="Rsph17029_0090"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
misc_feature 103625..104524
/locus_tag="Rsph17029_0090"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature 103652..104125
/locus_tag="Rsph17029_0090"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature <103958..104389
/locus_tag="Rsph17029_0090"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 104675..105931
/locus_tag="Rsph17029_0091"
/db_xref="GeneID:4896170"
CDS 104675..105931
/locus_tag="Rsph17029_0091"
/note="PFAM: extracellular solute-binding protein, family
1;
KEGG: rsp:RSP_1442 ABC sugar transporter, periplasmic
sugar-binding protein"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_001041983.1"
/db_xref="GI:126460869"
/db_xref="InterPro:IPR006059"
/db_xref="GeneID:4896170"
/translation="MTMRTTAASLLALALATGGTAAGAQTLEYWVYSDFAQGEALALQ
QEFIKEFQESHPGVTVNIVGKGDDDLTAGQIAGAASGNLPDVFMNAVGVGAQLVDVGA
LANIHDKWMAMPEEFRAQFNKGAVENCAPRPEEMYCIPYTGYGTLLFRNLTVLEEAGI
DTSAPPADWADWLAQMEKVKAAGKFAIPDQALVFNSIAEMYGVTGDVSTWGIDWESKT
TRIDPAVMTSVLEKFVAMQPLTSGTSRNDQATKDLFVTDQLAFHTIGPWVNPTYVEAV
ENSGLKYDFVLMPGETADKHGGIKNFEIVGVAPGENLDLAFEFATYITAKEQMARWAK
LLSRYNSNDAAMAEADVAALPLVARSVAAVEVTMDVSPPYLIQPVPACYQSTVVDYVS
ATADGEFTPEEGAAEMIAELNDCLAG"
misc_feature 104765..105916
/locus_tag="Rsph17029_0091"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 104768..105664
/locus_tag="Rsph17029_0091"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 106020..106910
/locus_tag="Rsph17029_0092"
/db_xref="GeneID:4896294"
CDS 106020..106910
/locus_tag="Rsph17029_0092"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1443 ABC sugar transporter, inner membrane
subunit"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001041984.1"
/db_xref="GI:126460870"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4896294"
/translation="MRVLRHHLPHFLMIAPFLVLFGAFFLYPILSGLYYSFHDWNGVR
EPVYVGLENYTRLLGSRDFSRAMWNLFQYIVITVPLGLTVAFCLALLVDSFTGRWANF
FRNAYFLPVVLPAFLAATIWRWIYAPNFGLLNMMLGWVGAEPVSFLNDTSTMLYALIA
VDVWVSAGFNMVIILAGLKNIPADLYEAARLDGASKLQQVIHITLPMLAPVLFFVLTY
AVISAMQVFDTPWLLTGSSFSEYGGRRGALLFPVMDMMGRAFGGVQFGLASAYGFLLT
IAIIAVTALLFAVRTWSNRR"
misc_feature 106041..106907
/locus_tag="Rsph17029_0092"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature 106218..106859
/locus_tag="Rsph17029_0092"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(106266..106271,106278..106283,106296..106298,
106326..106337,106341..106370,106377..106382,
106386..106388,106506..106511,106518..106520,
106524..106526,106533..106538,106542..106544,
106554..106559,106566..106568,106617..106619,
106659..106664,106671..106673,106692..106703,
106710..106715,106752..106757,106809..106814,
106821..106826,106830..106835,106842..106847,
106854..106859)
/locus_tag="Rsph17029_0092"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(106344..106388,106692..106709)
/locus_tag="Rsph17029_0092"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(106386..106388,106491..106493,106710..106712,
106746..106748,106755..106757,106809..106811)
/locus_tag="Rsph17029_0092"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(106569..106607,106623..106628,106638..106640)
/locus_tag="Rsph17029_0092"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 106907..107755
/locus_tag="Rsph17029_0093"
/db_xref="GeneID:4897093"
CDS 106907..107755
/locus_tag="Rsph17029_0093"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1444 ABC sugar transporter, inner membrane
subunit"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001041985.1"
/db_xref="GI:126460871"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4897093"
/translation="MTSAAAARISVWTVLKWAIAIAIAVITIFPIWWMINVVFSLPGE
PVAINPRLWPTSLSAGLEKIEMIFTQTGYLRAYGISLAYALLTILGVLFIGSLAAFEF
ALFDFPAKGPIFGIVMLSLMVPTAVTIIPTYLLTSNLGWLNSLQGLVVPGLASAFGLF
MLVQFMRAIPKDMIEAARLDGAGHFQIYWHVALPLCRNALVTLAILTFMQTWGNYMWP
LIVTTSPEMYTVGQVVGMFNAPLSHQTVDVVMTANLLAAVPPLLFFLIFQRKIVEGIA
MSGTKG"
misc_feature 107000..107749
/locus_tag="Rsph17029_0093"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 107135..107593
/locus_tag="Rsph17029_0093"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(107183..107188,107195..107200,107213..107215,
107243..107254,107258..107287,107294..107299,
107303..107305,107369..107371,107375..107377,
107384..107389,107393..107395,107405..107410,
107417..107419,107468..107470,107510..107515,
107522..107524,107543..107554,107561..107566)
/locus_tag="Rsph17029_0093"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(107261..107305,107543..107560)
/locus_tag="Rsph17029_0093"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(107303..107305,107363..107365,107561..107563)
/locus_tag="Rsph17029_0093"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(107420..107458,107474..107479,107489..107491)
/locus_tag="Rsph17029_0093"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 107775..108878
/locus_tag="Rsph17029_0094"
/db_xref="GeneID:4897360"
CDS 107775..108878
/locus_tag="Rsph17029_0094"
/note="PFAM: ABC transporter related; TOBE domain protein;
Transport-associated OB domain protein;
SMART: AAA ATPase;
KEGG: rsp:RSP_1445 ABC sugar transporter, ATPase subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001041986.1"
/db_xref="GI:126460872"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR005116"
/db_xref="InterPro:IPR013611"
/db_xref="GeneID:4897360"
/translation="MAFLEIRSLCKSFESYPVLKDIDLSIEKGEFVVFVGPSGCGKST
LLRMITGLETPTSGTIAIEDEVINDVDPARRGTAMVFQSYALYPHMTVFQNISFGLRM
SRKPKALIRERVEKAAAILRLDKLLDRKPAQLSGGQKQRVAIGRAIVREPRVFLFDEP
LSNLDAELRVQMRAELLELHERLGTTMIYVTHDQVEAMTLADKMVVMSGGRIQQYGRP
LDLYDDPDNRFVAGFVGSPKMNFLSATVTSAGADGLRADLAAGGAAALPLIESLAPGA
RIDIGIRPEQLSVVPAGQAPSADAVSVAGRVALIEDLGAESYLHLHLADDSRIGVRTA
RHAAHLGEEVRVAAPASGVLVFDEAGARLRGRA"
misc_feature 107775..108860
/locus_tag="Rsph17029_0094"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 107784..108422
/locus_tag="Rsph17029_0094"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 107880..107903
/locus_tag="Rsph17029_0094"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(107889..107894,107898..107906,108018..108020,
108246..108251,108348..108350)
/locus_tag="Rsph17029_0094"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 108009..108020
/locus_tag="Rsph17029_0094"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 108174..108203
/locus_tag="Rsph17029_0094"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 108234..108251
/locus_tag="Rsph17029_0094"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 108258..108269
/locus_tag="Rsph17029_0094"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 108336..108356
/locus_tag="Rsph17029_0094"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
misc_feature 108612..108842
/locus_tag="Rsph17029_0094"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene 108875..109816
/locus_tag="Rsph17029_0095"
/db_xref="GeneID:4897337"
CDS 108875..109816
/locus_tag="Rsph17029_0095"
/note="PFAM: ATPase, BadF/BadG/BcrA/BcrD type;
KEGG: rsp:RSP_1446 putative sugar kinase"
/codon_start=1
/transl_table=11
/product="BadF/BadG/BcrA/BcrD type ATPase"
/protein_id="YP_001041987.1"
/db_xref="GI:126460873"
/db_xref="InterPro:IPR002731"
/db_xref="GeneID:4897337"
/translation="MSLTAYSEAGAPVVGVDIGGTKTEIRLARRDGTRLVKLRETVLP
SRSWRGAGVAEDAANLLAQVHLLIGDEPIAALGVGAHGCDDDGECEALAAALRARSPL
PLRVVNDAELMPLAMGRVGQIGLVAGTGSIAVCRDAEGRMISAGGWGWLIGDDGSAAG
LVREAARAVAVALDAGATTEDPLIRLMYASLGQPDLPRLGSTLASLGSAAAIGAHAPA
VFDACDEGSPLAAAVIRAGAEALAELVMNLQVRGSTASHVVAGGSVIVSQPPLWRAFA
AAVAQRSEGQITPHLFNGHPVEGACRLAADLVTPALS"
misc_feature 108914..109321
/locus_tag="Rsph17029_0095"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature order(108923..108934,108938..108940,108944..108946,
109199..109201,109250..109261)
/locus_tag="Rsph17029_0095"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 109843..110847
/locus_tag="Rsph17029_0096"
/db_xref="GeneID:4896231"
CDS 109843..110847
/locus_tag="Rsph17029_0096"
/note="PFAM: sugar isomerase (SIS);
KEGG: rsp:RSP_1447 possible
glucosamine--fructose-6-phosphate aminotransferase
(isomerizing)"
/codon_start=1
/transl_table=11
/product="sugar isomerase (SIS)"
/protein_id="YP_001041988.1"
/db_xref="GI:126460874"
/db_xref="InterPro:IPR001347"
/db_xref="GeneID:4896231"
/translation="MSYRSTIARQPEALADTHATVLDQLGAADLSGLLRPVIGVTGIG
ASFAAAVVGAAELQARGQRGVAIRACDLAAGHDLADTLVGLSAGGRSIETVTAFQKLP
SAKRIGISQDGAGPLAGVSDFHLTIRQGTDATPSSVGYTATLLGMGMLFDRLRGSDGT
GFADLPAVVEEVLSQAADKMARIGTQFADRRAIDCVGAGAALGTADGASLLIREAARL
PASAYDTRHYLHGPLEAMDATTGVLIIGDGREVELARQVERIGCPVVLVTTDRSVQDG
DGLTVIHVPRRDNLIAQGIVDILAPQLIAAQLSDAAGLTDVKFRYRMQDTKVKTDAAA
"
misc_feature <110080..110304
/locus_tag="Rsph17029_0096"
/note="SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis of
phosphosugars; Region: SIS; cl00389"
/db_xref="CDD:207026"
misc_feature <110476..110823
/locus_tag="Rsph17029_0096"
/note="SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis of
phosphosugars; Region: SIS; cl00389"
/db_xref="CDD:207026"
gene 110902..111921
/locus_tag="Rsph17029_0097"
/db_xref="GeneID:4896983"
CDS 110902..111921
/locus_tag="Rsph17029_0097"
/EC_number="4.1.2.5"
/note="PFAM: aromatic amino acid beta-eliminating
lyase/threonine aldolase; aminotransferase, class I and
II;
KEGG: rsp:RSP_1448 putative L-allo-threonine aldolase"
/codon_start=1
/transl_table=11
/product="threonine aldolase"
/protein_id="YP_001041989.1"
/db_xref="GI:126460875"
/db_xref="InterPro:IPR001597"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:4896983"
/translation="MTIIDDFRSDTVTRPGPEMRAAMAAADVGDAVYDDCPTTLRLEA
VAAERLGKEASLFFPSGTQSNLAAIMAHCERGDEFLVGQQAHAYRHEGGGAAVLGSVQ
PQPLPNGPDGCIPLDAIREAIKPDDFHFARTRLLALENTFNGRVLDPAYVQAATALAR
DHGLAAHLDGARLMNAAVASGQAAATLAAPFDTVSLCLSKGLGAPVGSVLAGPRPVIE
RARRIRKMLGGGMRQTGVLAAAALHALERNVDRLAEDHARAARLAEVLSRFPALGSGP
AQTNMVFMAPDGIDVASFKAFLSARGIAMGGGYGVLRWVTHLDLDDAALTRVAEACEA
FFAGE"
misc_feature 110917..111906
/locus_tag="Rsph17029_0097"
/note="Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a...;
Region: TA_like; cd06502"
/db_xref="CDD:99748"
misc_feature 110917..111756
/locus_tag="Rsph17029_0097"
/note="Beta-eliminating lyase; Region: Beta_elim_lyase;
pfam01212"
/db_xref="CDD:201665"
misc_feature order(110923..110925,110932..110943,110959..110961,
110968..110976,111076..111078,111085..111090,
111109..111111,111163..111186,111205..111213,
111496..111501,111517..111519,111562..111567,
111574..111579,111607..111612)
/locus_tag="Rsph17029_0097"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99748"
misc_feature order(111082..111087,111094..111096,111316..111318,
111406..111408,111415..111417,111490..111492,
111499..111501)
/locus_tag="Rsph17029_0097"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99748"
misc_feature 111499..111501
/locus_tag="Rsph17029_0097"
/note="catalytic residue [active]"
/db_xref="CDD:99748"
gene complement(112106..112876)
/locus_tag="Rsph17029_0098"
/db_xref="GeneID:4897478"
CDS complement(112106..112876)
/locus_tag="Rsph17029_0098"
/note="PFAM: regulatory protein, DeoR; Helix-turn-helix,
type 11 domain protein;
KEGG: rsp:RSP_1449 putative transcriptional regulator of
sugar metabolism"
/codon_start=1
/transl_table=11
/product="DeoR family transcriptional regulator"
/protein_id="YP_001041990.1"
/db_xref="GI:126460876"
/db_xref="InterPro:IPR001034"
/db_xref="InterPro:IPR013196"
/db_xref="GeneID:4897478"
/translation="MQSYERHAKVLELLAVERRVFTNQLARMFDVSRETVRRDLLDME
QEGVLVRVHGGATAVERDIAPEPAFSERLVAHAGKKAAIGALAATLIPRGSTVFIDAG
TTTCAFARALARVGDFRIITNSIEIARLAGPAQTCDTLLLGGRPHADVPATYGEMTLS
EIDRFLADYAVISPVGLHADRGATDYALHEAEVARAMMRRSRDCIMLCHSEKIGTESR
VSICRLDEIGHLVTDETAERSLRLPRGEIHYAPIRPGA"
misc_feature complement(112154..112876)
/locus_tag="Rsph17029_0098"
/note="Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism];
Region: GlpR; COG1349"
/db_xref="CDD:31540"
misc_feature complement(112709..112861)
/locus_tag="Rsph17029_0098"
/note="helix_turn_helix, Deoxyribose operon repressor;
Region: HTH_DEOR; smart00420"
/db_xref="CDD:197714"
misc_feature complement(order(112706..112717,112721..112726,
112754..112756,112763..112768,112772..112786,
112808..112810))
/locus_tag="Rsph17029_0098"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(112175..112597)
/locus_tag="Rsph17029_0098"
/note="DeoR C terminal sensor domain; Region: DeoRC;
pfam00455"
/db_xref="CDD:201239"
gene 113149..113943
/locus_tag="Rsph17029_0099"
/db_xref="GeneID:4898005"
CDS 113149..113943
/locus_tag="Rsph17029_0099"
/note="PFAM: inositol monophosphatase;
KEGG: rsp:RSP_1450 inositol monophosphatase family
protein"
/codon_start=1
/transl_table=11
/product="inositol monophosphatase"
/protein_id="YP_001041991.1"
/db_xref="GI:126460877"
/db_xref="InterPro:IPR000760"
/db_xref="GeneID:4898005"
/translation="MSELGDALRFANDTADEARRIALKHFRQALDVESKADDSPVTLA
DRAVEALIRDRIMAAFPDHGIFGEEEAPLRPDSDHLWVVDPIDGTKSYVTGNPLFGGL
MALLKDGAPCLGQIDMPALGERWSGIEGQATTFNGRPCRTSDCRDPAEAFAYTTDPML
FTGADAQVLEMLRRSVRMLRFGGDCYAYALLASGHCDLVLETGLQPYDYLPLVQVIRG
AGGVITDWQGQALGVGSAGEVLAAATPELHRAMLDRIERLRAGQAA"
misc_feature 113170..113904
/locus_tag="Rsph17029_0099"
/note="Predominantly bacterial family of Mg++ dependend
phosphatases, related to inositol monophosphatases. These
enzymes may dephosphorylate fructose-1,6-bisphosphate,
inositol monophospate, 3'-phosphoadenosine-5'-phosphate,
or similar substrates; Region: Bacterial_IMPase_like_1;
cd01641"
/db_xref="CDD:30139"
misc_feature order(113281..113283,113350..113355,113398..113409,
113413..113415,113767..113772)
/locus_tag="Rsph17029_0099"
/note="active site"
/db_xref="CDD:30139"
gene 114016..115590
/locus_tag="Rsph17029_0100"
/db_xref="GeneID:4895336"
CDS 114016..115590
/locus_tag="Rsph17029_0100"
/note="PFAM: extracellular solute-binding protein, family
5;
KEGG: rsp:RSP_1451 ABC peptide/nickel/opine transporter,
periplasmic substrate-binding protein"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_001041992.1"
/db_xref="GI:126460878"
/db_xref="InterPro:IPR000914"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:4895336"
/translation="MDRRSFLRYGALAGTALGAARINPDFFFSSAFAQESRPLVFLSA
ENITGNWDPTAHTTLSQTNIEGFVMGYLTRAPMRPEEPDKVVYELATEITELDAHRLQ
IKLRDGVTFHDGKPFTAEDVKATFEYGAKLDRPKQVYPGGPETFSVETPDDHTVIVDT
SKGGYGASLFIFLASYLPILSAKDVAEGPKGPLSQRLNGTGPFRFVEQRGNDTVMEAY
DGYFRGAPKVTGVTFSFVGDATTRMLSLMNGQADVIERLEPEQVETLQARDDIKISRL
VSVENKYLWFRCSKPPFDDWRVRKAACHAIDRSMIMEIMGSAGEASSNFVSPIKFGYI
DLENYPEYNPEECQRLLAEAGYPNGEGLPELEYITSTGFYPKTKEYGELIAALLQEQG
FPVTLNVMEVAAWNERLYDRPGGGPGHMVDCGWSTGSPEPDLVLRTHFHSTAKRICGI
VDPEIDAALDAERDAPSLEARKESLQTNLMPMLADKAPALSLFTSVLIHGMRANVEGL
FIYPDGQSDASQTTLG"
misc_feature 114130..115539
/locus_tag="Rsph17029_0100"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature 114265..115350
/locus_tag="Rsph17029_0100"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 115669..116649
/locus_tag="Rsph17029_0101"
/db_xref="GeneID:4897350"
CDS 115669..116649
/locus_tag="Rsph17029_0101"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1452 ABC peptide/nickel/opine transporter,
inner membrane subunit"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001041993.1"
/db_xref="GI:126460879"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4897350"
/translation="MFILRFLARRLGQGAIIIFLVSALIFTLLRVVPGDPVRLMVGGM
APDTLVEEIAAEMGLRDPIYVQFGRYMGKVLQGDLGESFVRPASGAAVGGASFDDATR
GERAKVLDLIAETAPMTLQLAVLAMVFALMVGVPIGVWGGLYPGRLPDRLALYTSSLF
VSLPNFWLGIVLALLLSVKLNLLPAIGYRGFSYTILPALVLAVEIAPFIIRTLTVSVA
GVMGQTFIDIARVRGLSRNQIVFRHALKNSAVPLLNLLGVQFSMLLGGVLVIEFIFDY
PGLGLLTINAVMQRDFPLIQGIAIVTAAVFVLINIAVDLLATAIDPRLDY"
misc_feature 115675..116646
/locus_tag="Rsph17029_0101"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 116014..116601
/locus_tag="Rsph17029_0101"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(116062..116067,116074..116079,116092..116094,
116125..116136,116140..116169,116176..116181,
116185..116187,116278..116283,116287..116289,
116293..116295,116302..116307,116311..116313,
116323..116328,116335..116337,116386..116388,
116428..116433,116440..116442,116461..116472,
116479..116484,116521..116523,116551..116556,
116563..116568,116572..116577,116584..116589,
116596..116601)
/locus_tag="Rsph17029_0101"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(116143..116187,116461..116478)
/locus_tag="Rsph17029_0101"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(116185..116187,116263..116265,116479..116481,
116515..116517,116551..116553)
/locus_tag="Rsph17029_0101"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(116338..116376,116392..116397,116407..116409)
/locus_tag="Rsph17029_0101"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 116649..117560
/locus_tag="Rsph17029_0102"
/db_xref="GeneID:4895239"
CDS 116649..117560
/locus_tag="Rsph17029_0102"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1453 ABC peptide/nickel/opine transporter,
inner membrane subunit"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001041994.1"
/db_xref="GI:126460880"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4895239"
/translation="MTSTDLPLAMAVPATGRRVSTRIWQTAFASVEFRIGLAVFVLLL
AAALLYPELSGIDPSKMNIRAKLTPPIFMGEGWSWAHPLGTDQLGRDMLARALVGLRY
SLLIGVSTTVLMLLAGAMIGLFSGYFGGRTDTVLMRLTDAQLSIPMIILAITILGVSR
PTIPSIILVLGLAGWPVYARVMRSTVMSERRKEYVRGAMVLGATDLRIMFTLLLPLVL
PPMAFVAVLDIARMMIFESVLGFLGLGVQPPTPTFGNVIADGRKYLMNAWWIATMPGV
FLVLTLTSINLMGAALERARNSIYGGA"
misc_feature 116796..117533
/locus_tag="Rsph17029_0102"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature 116946..117494
/locus_tag="Rsph17029_0102"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(116994..116999,117006..117011,117024..117026,
117054..117065,117069..117098,117105..117110,
117114..117116,117165..117170,117174..117176,
117180..117182,117189..117194,117198..117200,
117210..117215,117222..117224,117273..117275,
117315..117320,117327..117329,117348..117359,
117366..117371,117411..117416,117444..117449,
117456..117461,117465..117470,117477..117482,
117489..117494)
/locus_tag="Rsph17029_0102"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(117072..117116,117348..117365)
/locus_tag="Rsph17029_0102"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(117114..117116,117150..117152,117366..117368,
117405..117407,117414..117416,117444..117446)
/locus_tag="Rsph17029_0102"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(117225..117263,117279..117284,117294..117296)
/locus_tag="Rsph17029_0102"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 117562..119415
/locus_tag="Rsph17029_0103"
/db_xref="GeneID:4897253"
CDS 117562..119415
/locus_tag="Rsph17029_0103"
/note="KEGG: rsp:RSP_1454 ABC peptide/nickel/opine
transporter, fused ATPase subunits;
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase
subunit;
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC
transporter, C-terminal domain protein;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="oligopeptide/dipeptide ABC transporter ATPase"
/protein_id="YP_001041995.1"
/db_xref="GI:126460881"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR010066"
/db_xref="InterPro:IPR013563"
/db_xref="GeneID:4897253"
/translation="MALDMGAAPETLLSVRGLSVAAGDRPILTDISFDLAPRSILSVI
GATGSGKTVLARALASWLSPPLRVTGGRILFRGRDLVADPAHARSLAGREIAYVGGNP
AGALDPTMTVGAQLVEKLRAVRPDMSADEARKKAIRLLEAVHIPSAQRRFHEYPFQYS
GGMMQRAMIVDALISDPALLIADNITQPLDVTVAAQILKLMRELNAQFSTAILFICSS
LPVACDASDEVMVLHEGRVVERQTPAALVASPGHTYTRELIAELPTLWQGGENSASRP
TDRERRAIMSVRGLAKAYEVRARGQAGISRVQAVRNVDFDVFPGDNFGVVGESGCGKS
SLMRLLTGLERPDAGSVFFEGENVGAASPKRLRELRRRFQLVLQDPYGCLPPQSPIGA
ILEEPLKIHRIGNAAERRDRARAVMAEVGLDDGLYRSLPTGLSAGQRQRLNVARAMIL
EPRLLIMDETLSALDQTEQGKLLDLFDKLQAQHGFTYIFISHDLTMVRRVCSRIAVMY
LGETVEVAPNERLFFDPGHPYSRALLSAAPTLEERRYRPEDCLLEGEPPSPIDLPPGC
AFASRCPHAFDRCRIENPALRARGGHALAACFLNPEPDIGLHETVTETPHV"
misc_feature 117589..119184
/locus_tag="Rsph17029_0103"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:31320"
misc_feature 117595..118281
/locus_tag="Rsph17029_0103"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 117694..117717
/locus_tag="Rsph17029_0103"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(117703..117708,117712..117720,117859..117861,
118108..118113,118210..118212)
/locus_tag="Rsph17029_0103"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 117850..117861
/locus_tag="Rsph17029_0103"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 118036..118065
/locus_tag="Rsph17029_0103"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 118096..118113
/locus_tag="Rsph17029_0103"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 118120..118131
/locus_tag="Rsph17029_0103"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 118198..118218
/locus_tag="Rsph17029_0103"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 118411..119109
/locus_tag="Rsph17029_0103"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 118540..118563
/locus_tag="Rsph17029_0103"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(118549..118554,118558..118566,118693..118695,
118933..118938,119035..119037)
/locus_tag="Rsph17029_0103"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 118684..118695
/locus_tag="Rsph17029_0103"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 118861..118890
/locus_tag="Rsph17029_0103"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 118921..118938
/locus_tag="Rsph17029_0103"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 118945..118956
/locus_tag="Rsph17029_0103"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 119023..119043
/locus_tag="Rsph17029_0103"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 119098..119358
/locus_tag="Rsph17029_0103"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 119408..120682
/locus_tag="Rsph17029_0104"
/db_xref="GeneID:4895967"
CDS 119408..120682
/locus_tag="Rsph17029_0104"
/EC_number="3.5.1.87"
/note="allantoate amidohydrolase and N-carbamoyl-L-amino
acid amidohydrolase are very similar; the allantoate
amidohydrolase from Escherichia coli forms a dimer and
binds zinc ions for catalytic activity and catalyzes the
conversion of allantoate to (S)-ureidoglycolate and
ammonia; carbamoyl amidohydrolase from Bacillus sp.
converts N-carbamoyl amino acids to amino acids, ammonia,
and carbon dioxide"
/codon_start=1
/transl_table=11
/product="allantoate amidohydrolase"
/protein_id="YP_001041996.1"
/db_xref="GI:126460882"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010158"
/db_xref="GeneID:4895967"
/translation="MSETQSLSRIDADLLNALMEKVSEFGSTGDGGIDRPALTDAHRD
ARDWFRSELEARGYTVLVDEIGNLFGRIDLAGPGAPLVMIGSHLDSQPRGGRFDGAYG
VIAALAAIETFRRDGGTPRCNYVIADWMNEEGARFQPSLLGSSVFAGLIELDWALGRR
DRDGRSVGEELVRTGYKGTDAAPRPDLYLELHIEGDAKMETAGARIAPFLRHWGALKV
RIEVTGEQNHTGPTPMEDRKDAVLGAAYIIAEVRRLADVAEDTLFTSVARVDISPNSP
NIVPGKAVLFCELRAPEPAMLDWSEASLRAALPELAAKAATRAEIVSIDRRPAGKFDP
RLARLTERVADDFGLPRMQLDTIGGHDAVALNAILPSIVFAVPSVGGVIHRNDEYTSP
EDLAAGGDVLTDMVRRIDRAGADLDLALGANA"
misc_feature 119432..120625
/locus_tag="Rsph17029_0104"
/note="allantoate amidohydrolase; Reviewed; Region:
PRK09290"
/db_xref="CDD:181761"
misc_feature 119450..120625
/locus_tag="Rsph17029_0104"
/note="M20 Peptidase beta-alanine synthase, an
amidohydrolase; Region: M20_bAS; cd03884"
/db_xref="CDD:193505"
misc_feature order(119666..119668,119699..119704,119801..119806,
119825..119827,119981..119983,119990..119992,
120050..120052,120056..120058,120275..120277,
120479..120484,120557..120559)
/locus_tag="Rsph17029_0104"
/note="active site"
/db_xref="CDD:193505"
misc_feature order(119666..119668,119699..119701,119801..119806,
119981..119983,120557..120559)
/locus_tag="Rsph17029_0104"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193505"
misc_feature order(119990..120001,120008..120013,120056..120058,
120089..120103,120107..120109,120116..120118,
120128..120133,120137..120145,120149..120157,
120161..120166,120170..120175,120194..120217,
120227..120232,120236..120247,120269..120271,
120275..120277,120476..120478)
/locus_tag="Rsph17029_0104"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193505"
gene 120679..121623
/locus_tag="Rsph17029_0105"
/db_xref="GeneID:4896914"
CDS 120679..121623
/locus_tag="Rsph17029_0105"
/note="PFAM: Choline/ethanolamine kinase; aminoglycoside
phosphotransferase;
KEGG: rsp:RSP_1456 hypothetical protein"
/codon_start=1
/transl_table=11
/product="aminoglycoside phosphotransferase"
/protein_id="YP_001041997.1"
/db_xref="GI:126460883"
/db_xref="InterPro:IPR002573"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:4896914"
/translation="MTGALVSSEMMARAAAAAGLSDEAARPGPAPLASPSYLALESAS
ILTDGGVFLKVMHPEMRQDFDLGAAMALARQAGEAGIGPRVLWADPAQGAIAMEALTE
AGGWRRAMQVDLQEAPVLGAAMAALKALHATPALSSRFDPFAQIDGLIADYSRLGAPL
PEDTGWLRRLIGAAEPVLRTGADLAPCRNDGAASNLMLGPGGAVRLVDYDRAGMNDPL
YDVGALLAETTDFEREMQAGFAAYAGTFDEVAFARARLWSFVDDMLHALWSRLKARTS
ARGSVEWLKYGEWRLMRLRMALNHPQYEQKIRLAGGAA"
misc_feature 120829..121422
/locus_tag="Rsph17029_0105"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature order(120832..120834,120838..120840,120925..120927,
120967..120978,121246..121248,121258..121263,
121267..121269,121297..121302,121357..121359)
/locus_tag="Rsph17029_0105"
/note="active site"
/db_xref="CDD:88612"
misc_feature order(120832..120834,120838..120840,120925..120927,
120967..120978,121246..121248,121258..121263,
121267..121269,121297..121302)
/locus_tag="Rsph17029_0105"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88612"
misc_feature order(121246..121248,121357..121359)
/locus_tag="Rsph17029_0105"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:88612"
gene 121620..122564
/locus_tag="Rsph17029_0106"
/db_xref="GeneID:4896933"
CDS 121620..122564
/locus_tag="Rsph17029_0106"
/note="PFAM: Choline/ethanolamine kinase; aminoglycoside
phosphotransferase;
KEGG: rsp:RSP_1457 putative choline kinase"
/codon_start=1
/transl_table=11
/product="choline/ethanolamine kinase"
/protein_id="YP_001041998.1"
/db_xref="GI:126460884"
/db_xref="InterPro:IPR002573"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:4896933"
/translation="MTRKTLGEASHPMEEAIEAVIRKAPLFRGGTGMVYGPVSGGISN
ENWRVTASDGSGDWFVKIPGNGTEMFIDRKAAFEASQRAAAAGLGPRVYGDLAEEGVE
INDFMADRRPATHSDFAEPAKRQAAMAAYRTLHGLAPLTATKTVFDMIDEHAAQAADL
GAPRFPDHDWIMLNEAMAREALTASGLDLVPCFNDPMPGNFMVGADGSILLIDYEYAS
MNDRCYDFGLFFGEMFFTPEQELELIETYFGEVRPEIVSRVIVHKALADVKWALWSMV
QLRVSRLAFDFHKYGMWKLMRFRQITGHADWPKHLRTI"
misc_feature 121722..122378
/locus_tag="Rsph17029_0106"
/note="Choline Kinase (ChoK). The ChoK subfamily is part
of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and...; Region: ChoK;
cd05151"
/db_xref="CDD:88614"
misc_feature 121728..122363
/locus_tag="Rsph17029_0106"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
misc_feature order(121734..121736,121740..121742,121746..121751,
121755..121757,121794..121796,121800..121802,
121887..121889,121929..121940,121944..121952,
122202..122204,122208..122210,122214..122219,
122223..122225,122253..122258,122265..122267,
122313..122315,122328..122330)
/locus_tag="Rsph17029_0106"
/note="active site"
/db_xref="CDD:88614"
misc_feature order(121734..121736,121749..121751,121755..121757,
121794..121796,121800..121802,121887..121889,
121929..121940,121944..121952,122214..122216,
122223..122225,122253..122258)
/locus_tag="Rsph17029_0106"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88614"
misc_feature order(121740..121742,121746..121748,122202..122204,
122208..122210,122217..122219,122265..122267,
122313..122315,122328..122330)
/locus_tag="Rsph17029_0106"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:88614"
misc_feature order(121839..121841,121848..121853,121860..121865,
121893..121904,122037..122039)
/locus_tag="Rsph17029_0106"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88614"
gene complement(123074..123337)
/locus_tag="Rsph17029_0107"
/db_xref="GeneID:4896890"
CDS complement(123074..123337)
/locus_tag="Rsph17029_0107"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001041999.1"
/db_xref="GI:126460885"
/db_xref="GeneID:4896890"
/translation="MEPGHAGQGCLREKRLKPPRFIRTFRGGLCQDRSLKNAVDFRLG
QSAHGLIPCRSDTCRRSDPDVVARESPWQMFPLRSTQTSTSRR"
gene complement(123743..125347)
/locus_tag="Rsph17029_0108"
/db_xref="GeneID:4895502"
CDS complement(123743..125347)
/locus_tag="Rsph17029_0108"
/note="KEGG: rsp:RSP_1458 putative DNA repair enzyme"
/codon_start=1
/transl_table=11
/product="putative DNA repair enzyme"
/protein_id="YP_001042000.1"
/db_xref="GI:126460886"
/db_xref="GeneID:4895502"
/translation="MARRRILSLWFPRLGAERLLRRRKDTLPPPFAVVGDRQGAQVLV
SVSAEAEALGLGPGQGLRDATAICPHLMTAPEDPASEAAFLAALRRWAGKFSPWVAEE
PPAGLMIDLTGCAHLFGGEEKVLGVVEADCAGLGLTVRAAVADTPGAAWALARHAGRA
LQGNLNGDAIEQEAHATRSRASRRRTFAPPSGGPLGLISAPGALRAALEPLPVAALRL
SEGTVQSLARLGLRRVGDLLDLPRASLARRFGQEVTRRIDQALGLEPEPVSPAGAPLH
FAVRLTLPDPIGLREDVEAGLDRLLGPLCDRLKEKGRGARRVRLQAFRSDGQVPAVEV
GLAQTTCAPERIRPLLALKLDQIDAGFGIDMLRLSAVETELLTVDSGKGRGPAGRPAE
VLADVVGRLGARLGAEGVTRLHPAESHVPAKTALVLAAAWSEAAGPWPEPPGRRPLIL
FPPEPVEVVGAPPHRVCWRRRDRRIVRAEGPERILPEWWLEEPDWRSGARDYWAVELE
EGERIWLFEAMGGVVSGGWWVEGEMA"
misc_feature complement(124226..125329)
/locus_tag="Rsph17029_0108"
/note="DNA Polymerase Y-family; Region: PolY_like;
cd03468"
/db_xref="CDD:176458"
misc_feature complement(order(124775..124777,125030..125035,
125195..125197,125204..125206,125303..125308,
125315..125320))
/locus_tag="Rsph17029_0108"
/note="active site"
/db_xref="CDD:176458"
misc_feature complement(order(124319..124321,124325..124339,
124415..124417,124502..124519,124595..124597,
124682..124702,125030..125032,125039..125041))
/locus_tag="Rsph17029_0108"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176458"
gene complement(125572..125844)
/locus_tag="Rsph17029_0109"
/db_xref="GeneID:4896242"
CDS complement(125572..125844)
/locus_tag="Rsph17029_0109"
/note="KEGG: rsp:RSP_6001 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042001.1"
/db_xref="GI:126460887"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4896242"
/translation="MRRTLLLLAAAASLTACGRKEPEIILPTDSCGAVRLTGLVGQPA
EVLETIRFTQPVRVVRPGDMVTMDFSPARLTVETNEAGRIVRLACG"
misc_feature complement(125575..125754)
/locus_tag="Rsph17029_0109"
/note="Peptidase inhibitor I78 family; Region:
Inhibitor_I78; pfam11720"
/db_xref="CDD:152156"
gene 126046..126792
/locus_tag="Rsph17029_0110"
/db_xref="GeneID:4895995"
CDS 126046..126792
/locus_tag="Rsph17029_0110"
/note="KEGG: rsp:RSP_1459 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042002.1"
/db_xref="GI:126460888"
/db_xref="GeneID:4895995"
/translation="MSDPRAPRLCVLIDADNVPANYAEAIFEEIAALGEASVRRIYGD
WSAMRLNAWAKKVAALGLVADQQFSNTKGKNASDIGLVISAMDFLHSGLFDGFVLVSS
DSDFTRLAARIREQGLDVYGIGEKKTPEAFRMACKRFIYVENLGSDEPPAREPRPADE
PQQPPAQRGREKEEPMKAIPLIAAAMRAIDPEGEWYSLGQIGQFITQANPDFDTRTYG
SAKLSDLIKKISRFEVKPGPGGQLLARDIA"
misc_feature 126076..126468
/locus_tag="Rsph17029_0110"
/note="Uncharacterized subfamily of N-terminal LabA-like
domains; Region: LabA_like_N_1; cd11297"
/db_xref="CDD:199898"
misc_feature order(126085..126087,126094..126096,126277..126279,
126346..126348,126352..126354,126358..126360)
/locus_tag="Rsph17029_0110"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:199898"
misc_feature 126577..126765
/locus_tag="Rsph17029_0110"
/note="C-terminal domain of LabA_like proteins; Region:
LabA_like_C; cd10146"
/db_xref="CDD:199214"
gene 126923..127168
/locus_tag="Rsph17029_0111"
/db_xref="GeneID:4895713"
CDS 126923..127168
/locus_tag="Rsph17029_0111"
/note="KEGG: rsp:RSP_1460 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042003.1"
/db_xref="GI:126460889"
/db_xref="GeneID:4895713"
/translation="MAQRLHLVFGGELASPTKNVFKDVKAIHIVGMFPDYASAFAAWK
AEAQRTVDDAHVRYFIAHLHRLRDEEQPASATEELGN"
misc_feature 126929..127132
/locus_tag="Rsph17029_0111"
/note="Domain of unknown function (DUF4170); Region:
DUF4170; pfam13773"
/db_xref="CDD:205946"
gene 127216..128367
/locus_tag="Rsph17029_0112"
/db_xref="GeneID:4895710"
CDS 127216..128367
/locus_tag="Rsph17029_0112"
/note="PFAM: Three-deoxy-D-manno-octulosonic-acid
transferase domain protein;
KEGG: rsp:RSP_1461 putative
3-deoxy-D-manno-octulosonic-acid transferase"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_001042004.1"
/db_xref="GI:126460890"
/db_xref="InterPro:IPR007507"
/db_xref="GeneID:4895710"
/translation="MRRDPAEGPVRPQRPLGRLIWLHAPTRDSARPMAELGRRIILDE
GFPVLLTTHVPVSSGGILIVQPPPPDTPAAVAAFLDHWRPDAAFMAEGELRPSLINAA
FDRNVPLALVDGAAPRILPGRESWWPGQMRNLLAKFRHIFTLDEAAARAFRKAGSSSH
VTQVAGRLEEGSLALPCTEAERAALARLLAPRQVWLAAGLPAEEEAAAIAAHHAALKL
AHRMLLFVVPQEPDRAAAFAARCEAEGWKVARRAADEEPDADTEVFVADGMAELGLWY
RLAPVTWLGGSLSVGCVLDPLEAASLGSALIHGPHFGPHGATLARLSAARASLPVASA
RGLAEALADLLAPDRVARLAHAGWAVASEGTEVTDRMVALAGRLVEREA"
misc_feature 127240..127737
/locus_tag="Rsph17029_0112"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
gene 128367..129365
/gene="lpxK"
/locus_tag="Rsph17029_0113"
/db_xref="GeneID:4895696"
CDS 128367..129365
/gene="lpxK"
/locus_tag="Rsph17029_0113"
/EC_number="2.7.1.130"
/note="transfers the gamma-phosphate of ATP to the 4'
position of a tetraacyldisaccharide 1-phosphate
intermediate to form tetraacyldisaccharide
1,4'-bis-phosphate"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_001042005.1"
/db_xref="GI:126460891"
/db_xref="InterPro:IPR003758"
/db_xref="GeneID:4895696"
/translation="MRPPAFWFTPPDSPALAARLLAPLGQAYAAATARRLRAPGHRAG
VPVICIGNLNAGGTGKTPTAIALMQRLAARGIEAHVVSRGYGGRLEGPVEVDARRHRA
ADVGDEPLLLAAFGRAWVARDRAAGVRAAEAAGAQAILLDDGFQNPSVVKDLSLIVVD
AAVGFGNGRCLPAGPLREPVEAGLARADLLLSIGGPEAQRRFATDWPALPVPRLTGRL
ATLQMGMDWQGARVLAFAGIGRPEKFFASLRAEGAELLRAEALDDHQPLGEALMKRLE
IEAMALGAQLVTTEKDAVRLPPSFRQKVLTLPVRLEFDDGAALDEALDRLGLAARS"
misc_feature 128481..129344
/gene="lpxK"
/locus_tag="Rsph17029_0113"
/note="Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK;
pfam02606"
/db_xref="CDD:145645"
gene complement(129464..130609)
/locus_tag="Rsph17029_0114"
/db_xref="GeneID:4895586"
CDS complement(129464..130609)
/locus_tag="Rsph17029_0114"
/note="PFAM: L-carnitine dehydratase/bile acid-inducible
protein F;
KEGG: rsp:RSP_1463 putative acyl-CoA transferase/carnitine
dehydratase"
/codon_start=1
/transl_table=11
/product="L-carnitine dehydratase/bile acid-inducible
protein F"
/protein_id="YP_001042006.1"
/db_xref="GI:126460892"
/db_xref="InterPro:IPR003673"
/db_xref="GeneID:4895586"
/translation="MSAPLAGIRVVELARILAGPWAGQVLADLGADVVKVEAPEGDDT
RRWGPPFIEREGDRSAAYFHAANRGKRSVTADFRTPEGQETVRRLVADADVVIENFKV
GGLAKYGLDWPSLQKVNPRLVYCSITGFGQDGPYAHRAGYDFIIQGMAGLMSVTGAAE
GQPQKVGVAVTDIFTGIYAATAILAALHQRAGTGRGQQVDMALMDVAAGIMANQAMNY
LATGVAPRKMGNEHPNLAPYAVFDCADGWIIIATGNDAQYRRLCTLLGLPGLATAPAF
LTNADRVANRAELTRALTAVTSGWRKAELLAACEAEGVPAGPINDMAEVFADPQIRHR
GMQIAPDGVPGVRSPFRFSEAKLALARPAPRLGEHQAEVLGEPADQD"
misc_feature complement(129479..130609)
/locus_tag="Rsph17029_0114"
/note="Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion]; Region:
CaiB; COG1804"
/db_xref="CDD:31989"
misc_feature complement(129860..130393)
/locus_tag="Rsph17029_0114"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:202268"
gene complement(130606..131277)
/locus_tag="Rsph17029_0115"
/db_xref="GeneID:4895541"
CDS complement(130606..131277)
/locus_tag="Rsph17029_0115"
/note="KEGG: rsp:RSP_1464 putative periplasmic
thiol-disulphide interchange protein (DsbA family)"
/codon_start=1
/transl_table=11
/product="periplasmic thiol-disulfide interchange protein"
/protein_id="YP_001042007.1"
/db_xref="GI:126460893"
/db_xref="GeneID:4895541"
/translation="MVKKLGLAALALTTVAGVALWNGSRDAGQTQLPPMAASAQEAGA
AQTTAAVEDMSMGAEDAPVTIVEYASFTCPHCANFEKEVLTPLKRDYIDTGKVRFTFR
EVYFDRYGLWAAMVARCGGEMRYFGIADLIFEQQKEWVTNDPAQVATNLRKIGKTAGL
DDAALDACMNDQAKAEAMVAAFQKNSQADDITATPSLIINGTKHSNMSYEELKKIIDA
ELAKG"
misc_feature complement(130624..131127)
/locus_tag="Rsph17029_0115"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
misc_feature complement(130675..131088)
/locus_tag="Rsph17029_0115"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
gene complement(131289..131819)
/locus_tag="Rsph17029_0116"
/db_xref="GeneID:4895397"
CDS complement(131289..131819)
/locus_tag="Rsph17029_0116"
/note="PFAM: protein of unknown function DUF1159;
KEGG: rsp:RSP_1465 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042008.1"
/db_xref="GI:126460894"
/db_xref="InterPro:IPR010593"
/db_xref="GeneID:4895397"
/translation="MTRAPAPPPAKPNRRMRGFEAASGLLQDRIRKAGEKRGFAVTRL
LTHWPEVAGEDLARITRPVKVGYGAREGFGATLTILVSSAHAPLVQMQLPALKERVNA
CYGYAAIHRITLTQTAPSGFAEGQALFDPAPPAPRPVDPAVKARAAETADGVQDEGLK
AALERLAQNFLSRSKA"
misc_feature complement(131484..131747)
/locus_tag="Rsph17029_0116"
/note="Protein of unknown function (DUF721); Region:
DUF721; pfam05258"
/db_xref="CDD:203224"
gene 131901..133004
/locus_tag="Rsph17029_0117"
/db_xref="GeneID:4895677"
CDS 131901..133004
/locus_tag="Rsph17029_0117"
/note="TIGRFAM: A/G-specific adenine glycosylase;
PFAM: helix-hairpin-helix motif; HhH-GPD family protein;
KEGG: rsp:RSP_1466 putative MutY, A/G-specific adenine
glycosylase"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_001042009.1"
/db_xref="GI:126460895"
/db_xref="InterPro:IPR000445"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR004036"
/db_xref="InterPro:IPR005760"
/db_xref="GeneID:4895677"
/translation="MRDTDESPDDGDISARLLAWYDRHARVMPWRVGPAERRAGHRPD
PYRVWLSEIMLQQTTVAAVRDYFRRFTDRWPDVEALAAAPDADVMAEWAGLGYYARAR
NLLKGARAVVALHGGRFPETRDGLLSLPGVGPYTAAAVASIAFDEPATVVDGNVERVV
SRLFAVETPLPAAKPELTRLAATLTPQERPGDHAQAMMDLGATICTPRKPVCSLCPLR
PDCEGHRAGLEAELPRKAPKAEKPVREGRLWIAVRADGAVLLETRPERGMLGGMLGWP
GTDWDRSGGPAGAPLEADWRETGVEVRHTFTHFHLRLEVLVAQVAEGAVPARGSFVPR
AEFRPAALPTLMRKGWSVAAAAIRHPTGEERLA"
misc_feature 131919..132959
/locus_tag="Rsph17029_0117"
/note="A/G-specific DNA glycosylase [DNA replication,
recombination, and repair]; Region: MutY; COG1194"
/db_xref="CDD:31387"
misc_feature 132036..132503
/locus_tag="Rsph17029_0117"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(132069..132077,132084..132086,132198..132200)
/locus_tag="Rsph17029_0117"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 132285..132308
/locus_tag="Rsph17029_0117"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(132315..132317,132480..132482,132492..132494)
/locus_tag="Rsph17029_0117"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 132357..132359
/locus_tag="Rsph17029_0117"
/note="active site"
/db_xref="CDD:28938"
misc_feature 132513..132563
/locus_tag="Rsph17029_0117"
/note="Iron-sulfur binding domain of endonuclease III;
Region: EndIII_4Fe-2S; pfam10576"
/db_xref="CDD:204516"
misc_feature 132627..132959
/locus_tag="Rsph17029_0117"
/note="DNA glycosylase (MutY in bacteria and hMYH in
humans) is responsible for repairing misread A*oxoG
residues to C*G by removing the inappropriately paired
adenine base from the DNA backbone. It belongs to the
Nudix hydrolase superfamily and is important...; Region:
DNA_Glycosylase_C; cd03431"
/db_xref="CDD:72889"
misc_feature order(132699..132707,132810..132812,132819..132824)
/locus_tag="Rsph17029_0117"
/note="DNA binding and oxoG recognition site [nucleotide
binding]"
/db_xref="CDD:72889"
gene 133042..134313
/locus_tag="Rsph17029_0118"
/db_xref="GeneID:4898094"
CDS 133042..134313
/locus_tag="Rsph17029_0118"
/EC_number="1.14.15.3"
/note="PFAM: fatty acid desaturase;
KEGG: rsp:RSP_1467 possible alkane hydroxylase (fatty acid
desaturase)"
/codon_start=1
/transl_table=11
/product="alkane 1-monooxygenase"
/protein_id="YP_001042010.1"
/db_xref="GI:126460896"
/db_xref="InterPro:IPR005804"
/db_xref="GeneID:4898094"
/translation="MVSAPDVVKPNPPPIAHLKRALPFAIPFATVPLALIGAAQGGWT
VLLLPLFVWGLFDLLDLALGADPRNEDPATETRDLFWFRLLSLIWVPLQLLTVFGLVF
HVSHAAHLGLIEKIGLFIGIGAMTGSVGLVHAHELIHRNGRLERGLGDLLLASVLYSH
FRTLHLRVHHLLVGTAEDPATARFGEDFPTYLQRALTEGHRRAWETEVGLLARTGRPP
QALRNPFWIYGVLQFAMIVAALVLGGAQGLLLFLVQAFVGVCQLELMGYVAHYGLTRR
LLPDGTPEPVQPHHSWNAPQKASGWLLLNLGRHSDHHARPDRRYPLLQALPAAEAPQL
PHGYPVMAAMALVPKLWHRRMDLRVLDWRQARYPDIEDWTPYGSGAGAAADAAPPLPE
TVAAETPVAPVVPPASEVPEAPAAERRPETV"
misc_feature 133168..134118
/locus_tag="Rsph17029_0118"
/note="Alkane hydroxylase is a bacterial,
integral-membrane di-iron enzyme that shares a requirement
for iron and oxygen for activity similar to that of the
non-heme integral-membrane acyl coenzyme A (CoA)
desaturases and acyl lipid desaturases. The alk genes...;
Region: Alkane-hydroxylase; cd03512"
/db_xref="CDD:58178"
misc_feature order(133444..133446,133456..133458,133534..133536,
133546..133551,133966..133968,133975..133980)
/locus_tag="Rsph17029_0118"
/note="Di-iron ligands [ion binding]; other site"
/db_xref="CDD:58178"
gene complement(134469..135587)
/locus_tag="Rsph17029_0119"
/db_xref="GeneID:4897384"
CDS complement(134469..135587)
/locus_tag="Rsph17029_0119"
/note="PFAM: DNA methylase N-4/N-6 domain protein;
KEGG: rsp:RSP_1468 site-specific DNA-methyltransferase"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_001042011.1"
/db_xref="GI:126460897"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR002295"
/db_xref="InterPro:IPR002941"
/db_xref="GeneID:4897384"
/translation="MATKTKTTEAPVLPLNQILAGDCIETMRSLPECSVDLIFADPPY
NLQLRGDLHRPDNSRVDAVDDHWDQFSSFSVYDQFTREWLAAARRLLKPNGAIWVIGS
YHNIFRVGAALQDQGFWILNDVVWRKSNPMPNFKGKRLTNAHETLIWASKQEASKYTF
NYEALKALNEGVQMRSDWVIPICTGHERLKDEQGDKAHPTQKPEALLHRVMVATTNPG
DVVLDPFFGTGTTGAVAKMLGRDFIGIEREESYRRIAAERLSRVRRYDASALEVSGSK
RAEPRVPFGQLVERGMLRPGEELYSMNNRHKAKVRADGTLIGNDVKGSIHQVGAALEG
APSCNGWTYWCYKREGKMIPIDILRQQIRAEMEDPRPN"
misc_feature complement(134709..135545)
/locus_tag="Rsph17029_0119"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature complement(134817..135485)
/locus_tag="Rsph17029_0119"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(135676..136314)
/gene="rnhB"
/locus_tag="Rsph17029_0120"
/db_xref="GeneID:4897130"
CDS complement(135676..136314)
/gene="rnhB"
/locus_tag="Rsph17029_0120"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_001042012.1"
/db_xref="GI:126460898"
/db_xref="InterPro:IPR001352"
/db_xref="GeneID:4897130"
/translation="MEITCPDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRL
FPGRIPEGLNDSKKLTALRREMLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGR
ALAGLPSRPDFALIDGHMVPKGLGHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDL
EQQHPGYGWRTNAGYGTKDHLQALLNLGPTPHHRRSFKPVHNILYQEASISP"
misc_feature complement(135715..136248)
/gene="rnhB"
/locus_tag="Rsph17029_0120"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature complement(order(135865..135867,135922..135924,
135964..135966,136024..136026,136033..136041,
136228..136239))
/gene="rnhB"
/locus_tag="Rsph17029_0120"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature complement(order(135907..135909,135964..135966,
136234..136239))
/gene="rnhB"
/locus_tag="Rsph17029_0120"
/note="active site"
/db_xref="CDD:187695"
gene complement(136470..136934)
/locus_tag="Rsph17029_0121"
/db_xref="GeneID:4896889"
CDS complement(136470..136934)
/locus_tag="Rsph17029_0121"
/note="KEGG: rsp:RSP_1471 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042013.1"
/db_xref="GI:126460899"
/db_xref="GeneID:4896889"
/translation="MIPFGRLPHSLAAALICAAPLLPAAAWSQTGVPLPLVSAGDRPV
TLPWTRPVVPGEGHDRPAAWGRIYPPPQEIPVPRHRADGPRHAHGDHHPWDDRRAWED
WRRWSEHHDRGLHREGPPRPVLRELPRECLIVTRSDRAAFDAGCLARNGFRS"
gene 137258..137581
/locus_tag="Rsph17029_0122"
/db_xref="GeneID:4896788"
CDS 137258..137581
/locus_tag="Rsph17029_0122"
/note="KEGG: rsp:RSP_6002 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042014.1"
/db_xref="GI:126460900"
/db_xref="GeneID:4896788"
/translation="MIGARETRSSSMRLSVLLAALALGSALAAPVEAACFADYKAKQD
RPLRLHYGVAKVPDGACNRKGATRVLKPRLQQAGWTLLNVLSTFGPEGLDERKASAGS
YFLRY"
gene 137553..138257
/locus_tag="Rsph17029_0123"
/db_xref="GeneID:4896568"
CDS 137553..138257
/locus_tag="Rsph17029_0123"
/note="KEGG: rsp:RSP_1472 hypothetical protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_001042015.1"
/db_xref="GI:126460901"
/db_xref="GeneID:4896568"
/translation="MREATSSATDALRAGNRVVAGGISAIVLILAAAAVFLFLNLPDA
DAFNARVERLFVEVDALRSGPEIRLLEILAQSGTTFSEVLASYRTVIFVLLVFSTSLL
VAALVLLVTIVALNRRMSAIQRSGIQVASLMISRESRSVFINDMEFSLTEAAIETLSV
LAEARMDDDMLSGAQIEAVISGKNVTDCDEAAGATRVKRLRDALGNQLVSELLVKTVA
RRGYMLAVEKDVIRMV"
misc_feature 137931..138224
/locus_tag="Rsph17029_0123"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature order(138003..138005,138066..138071,138126..138128,
138135..138137,138159..138164,138198..138200,
138213..138215)
/locus_tag="Rsph17029_0123"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(138283..138654)
/locus_tag="Rsph17029_0124"
/db_xref="GeneID:4896312"
CDS complement(138283..138654)
/locus_tag="Rsph17029_0124"
/note="KEGG: rsp:RSP_1473 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042016.1"
/db_xref="GI:126460902"
/db_xref="GeneID:4896312"
/translation="MTFPRLGLALAAVLATSAAFAQEGASQTGEQKAQVTGELQSISM
TPPPQLELLAPDGARWIIDLGEPERMERAGLDAETAQPGVAVHVLGLRAADGANRMEA
LRVTIDGTAYDLQPEEVEPKT"
gene 138858..139955
/locus_tag="Rsph17029_0125"
/db_xref="GeneID:4896095"
CDS 138858..139955
/locus_tag="Rsph17029_0125"
/note="TIGRFAM: carboxynorspermidine decarboxylase;
PFAM: Orn/DAP/Arg decarboxylase 2;
KEGG: rsp:RSP_1474 putative carboxynorspermidine
decarboxylase protein"
/codon_start=1
/transl_table=11
/product="carboxynorspermidine decarboxylase"
/protein_id="YP_001042017.1"
/db_xref="GI:126460903"
/db_xref="InterPro:IPR000183"
/db_xref="InterPro:IPR005730"
/db_xref="GeneID:4896095"
/translation="MIQTPYYLIDADRLRQNMAVVDRLRQASGAKALLALKCFATWPA
FEHMRDHMDGTTSSSLYELRLGREKFGKETHAYSVAWPDHEIDEAVGYADKIIFNSVG
QLARFRNRTGGIARGLRLNPGLSTSGFDLADPARPFSRLGEWSAEKIEAVLPDISGVM
IHYNCENADVDLFDRQLSEIEGRFGAILDRLDWVSLGGGIHFTGEGYPVDRLAARLKA
FAAAHGVQVYLEPGEAAITRSATLEVTVLDLLDNGKQLAIVDSSVEAHMLDLLIYRQS
AKVEPDAGDHSYMVCGKSCLAGDIFGEFRFAQPLQVGDRLSIADAAGYTMVKKNWFNG
VKMPSIVIREPDGSLRVAREFGYGDYASSLG"
misc_feature 138861..139949
/locus_tag="Rsph17029_0125"
/note="carboxynorspermidine decarboxylase; Region: nspC;
TIGR01047"
/db_xref="CDD:188104"
misc_feature 138867..139889
/locus_tag="Rsph17029_0125"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Carboxynorspermidine Decarboxylase; Region:
PLPDE_III_CANSDC; cd06829"
/db_xref="CDD:143502"
misc_feature order(138867..138869,138966..138968,139029..139034,
139038..139043,139104..139106,139152..139154,
139161..139163,139173..139175,139254..139265,
139596..139607,139623..139625,139629..139631,
139635..139637,139644..139646,139731..139733,
139737..139745,139752..139754,139836..139844,
139851..139859)
/locus_tag="Rsph17029_0125"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143502"
misc_feature order(138960..138962,138966..138968,139023..139025,
139089..139091,139212..139214,139341..139343,
139350..139352,139449..139454,139545..139556,
139740..139745,139827..139829,139839..139841,
139851..139853)
/locus_tag="Rsph17029_0125"
/note="active site"
/db_xref="CDD:143502"
misc_feature order(138960..138962,138966..138968,139023..139025,
139089..139091,139212..139214,139341..139343,
139350..139352,139449..139454,139545..139556,
139740..139742,139827..139829)
/locus_tag="Rsph17029_0125"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143502"
misc_feature order(138966..138968,139740..139742)
/locus_tag="Rsph17029_0125"
/note="catalytic residues [active]"
/db_xref="CDD:143502"
misc_feature order(139350..139352,139554..139556,139740..139745,
139827..139829,139839..139841,139851..139853)
/locus_tag="Rsph17029_0125"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143502"
gene 139992..141230
/locus_tag="Rsph17029_0126"
/db_xref="GeneID:4895972"
CDS 139992..141230
/locus_tag="Rsph17029_0126"
/note="PFAM: Saccharopine dehydrogenase;
KEGG: rsp:RSP_1475 saccharopine dehydrogenase family"
/codon_start=1
/transl_table=11
/product="saccharopine dehydrogenase"
/protein_id="YP_001042018.1"
/db_xref="GI:126460904"
/db_xref="InterPro:IPR005097"
/db_xref="GeneID:4895972"
/translation="MKKNVLIIGAGGVAQVVAHKCAQNNDVLGDLHIASRTVSKCEAI
IASVHEKGAMKVAGRFEPHAVDATDTAAVAALIRGTGAEIVINVGSAFVNMPVLEACL
ETGAAYMDTAIHEDPAKICETPPWYGNYEWKRRERCAEAGVTAILGVGFDPGVVNAYA
RLAADEYLDEVRSIDIVDINAGSHGRWFSTNFDPEINFREFTGTVYSWQNGDWQSNRM
FEVGQEFDLPVVGKQQAYMTGHDEVHSLAANYPQADVRFWMGFSDHYINVFTVLKNLG
LLSEKPVRTAEGLEVVPLKVVKAVLPDPSSLAPDYTGKTCIGDIVKGTKDGQPAEVFI
YNVADHAEAYAEVGSQGISYTAGVPPVAAAILVAEGTWDVRKMANVEELDPKPFLALL
NRMGLPTRIKDAAGDRALEF"
misc_feature 139995..141209
/locus_tag="Rsph17029_0126"
/note="Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism]; Region: LYS9;
COG1748"
/db_xref="CDD:31934"
misc_feature 139995..>140150
/locus_tag="Rsph17029_0126"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(140022..140030,140094..140099)
/locus_tag="Rsph17029_0126"
/note="NAD(P) binding pocket [chemical binding]; other
site"
/db_xref="CDD:133449"
gene complement(141424..143367)
/locus_tag="Rsph17029_0127"
/db_xref="GeneID:4895956"
CDS complement(141424..143367)
/locus_tag="Rsph17029_0127"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC; cadmium-translocating P-type
ATPase; heavy metal translocating P-type ATPase;
PFAM: Haloacid dehalogenase domain protein hydrolase;
E1-E2 ATPase-associated domain protein;
KEGG: rsp:RSP_1476 heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase"
/codon_start=1
/transl_table=11
/product="heavy metal translocating P-type ATPase"
/protein_id="YP_001042019.1"
/db_xref="GI:126460905"
/db_xref="InterPro:IPR000150"
/db_xref="InterPro:IPR001366"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006404"
/db_xref="InterPro:IPR006416"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:4895956"
/translation="MSVAATEPWTSPMTDDRAPLILTGLTLVGMFAAAVVRWGIGTTE
APWPAVEAGALLLVFLAGGVPAAIRALKALWQEHELDIDLLMVIAALAAAAVGAAMEG
AVLLTLFSFSTTLEQRAMGRARRAIEALMELRPDRTLRRTEAGTEEVAVEDLRPGDVV
VLRPGARVPVDGVVVEGEGSIDESTITGESVPVAKSRGAAVFEATVNLHGVLEVEVRR
PLTESTVARMIALVTEAQAARAPSERFSEWFGQRYTVAVLAGSILALLGFLWAGRAWD
DALYRAATLLVAASPCAIVISVPAAILSALSAAARGGVLFKGGAALETLARVESFAFD
KTGTLTTGRQEVVEIACDGDRDAFLTRLAGLEAHSEHPIADAIRRAAEARGLQPFPVR
EARAVPGEGMVGVDDEGMIWAGNARLAARMGARSTPAEPSASVSALHRGAETLVLLGR
GARLLGALTVADRPRDSAGPGIAALRQSGVRRIAMLTGDRRAVADRIGAGLGIGPDEI
RADLLPEDKVRIVAEFAAQGRVAFVGDGVNDAAALARADVGIAMGAAGSEVALQAADV
ALLSEDIGRLALAHRLSRRTARIIRQNLVFAMGAMVTLVLSGLFLDLPLPLAVIGHEG
GTVLVVLNGLRLLADPIRRRRTA"
misc_feature complement(141457..143022)
/locus_tag="Rsph17029_0127"
/note="heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type
ATPase; Region: ATPase-IB2_Cd; TIGR01512"
/db_xref="CDD:211664"
misc_feature complement(142396..143022)
/locus_tag="Rsph17029_0127"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature complement(141664..>141921)
/locus_tag="Rsph17029_0127"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(143446..143625)
/locus_tag="Rsph17029_0128"
/db_xref="GeneID:4895733"
CDS complement(143446..143625)
/locus_tag="Rsph17029_0128"
/note="KEGG: rsp:RSP_6210 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042020.1"
/db_xref="GI:126460906"
/db_xref="GeneID:4895733"
/translation="MTDDSKSAPQDRRREDDVVDQRHQQIDPAGKDREDPGEAGPHRS
QKQPGQTPEDPQDKP"
gene complement(143652..145271)
/locus_tag="Rsph17029_0129"
/db_xref="GeneID:4895656"
CDS complement(143652..145271)
/locus_tag="Rsph17029_0129"
/note="PFAM: ABC transporter related;
Oligopeptide/dipeptide ABC transporter, C-terminal domain
protein;
SMART: AAA ATPase;
KEGG: rsp:RSP_1478 ABC oligopeptide transporter, fused
ATPase subunits"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001042021.1"
/db_xref="GI:126460907"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013563"
/db_xref="GeneID:4895656"
/translation="MEPVLDVKGLRVAFQTNDGEVQAVRGIDLSVMPGETVAIVGESG
SGKSQTTMALMGLLAQNGRATGSALYRGRELIGLSERELNKVRGDKITMIFQEPMTSL
DPLYRIGDQLAEPLRFHRGLSKREARPRIVELLRLVGIPEPERRIDSYPHELSGGQRQ
RVMIAMALACDPDILIADEPTTALDVTIQAQILTLLADLQKRLGMAILFITHDLGIVQ
RFADRVYVMQAGEVVETGETAALFEAPSHPYTRMLLDAEPEGTKAPPPETAPVLMEGR
NVEVVFSSGGGLFEAPNKLRAVDGVSVRLRQGQTIGVVGESGSGKSTLGRALLRLLPS
AGLVTFEGRELARDAAEMRPLRRRMQLVFQDPFGSLSPRMTVGRIITEGLKIHEPDLS
TRERDRRAGEALAEVGLSPAMRNRYPHEFSGGQRQRIAIARSMILKPRVIVLDEPTSA
LDRSVQKQIVDLLRDLQARHGLSYLFISHDLAVVRALADYILVMKEGRIVEEGQTADI
FDRPQEAYTRTLMAAALETRRFREEAERTGV"
misc_feature complement(143709..145268)
/locus_tag="Rsph17029_0129"
/note="ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only]; Region: COG4172"
/db_xref="CDD:33913"
misc_feature complement(144564..145262)
/locus_tag="Rsph17029_0129"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(145128..145151)
/locus_tag="Rsph17029_0129"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(144636..144638,144735..144740,
144984..144986,145125..145133,145137..145142))
/locus_tag="Rsph17029_0129"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(144984..144995)
/locus_tag="Rsph17029_0129"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(144783..144812)
/locus_tag="Rsph17029_0129"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(144735..144752)
/locus_tag="Rsph17029_0129"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(144717..144728)
/locus_tag="Rsph17029_0129"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(144630..144650)
/locus_tag="Rsph17029_0129"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<144462..144575)
/locus_tag="Rsph17029_0129"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
misc_feature complement(143763..144458)
/locus_tag="Rsph17029_0129"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(144306..144329)
/locus_tag="Rsph17029_0129"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(143835..143837,143934..143939,
144180..144182,144303..144311,144315..144320))
/locus_tag="Rsph17029_0129"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(144180..144191)
/locus_tag="Rsph17029_0129"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(143982..144011)
/locus_tag="Rsph17029_0129"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(143934..143951)
/locus_tag="Rsph17029_0129"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(143916..143927)
/locus_tag="Rsph17029_0129"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(143829..143849)
/locus_tag="Rsph17029_0129"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
gene complement(145273..146412)
/locus_tag="Rsph17029_0130"
/db_xref="GeneID:4895529"
CDS complement(145273..146412)
/locus_tag="Rsph17029_0130"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1479 ABC oligopeptide transporter, inner
membrane subunit OppC"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001042022.1"
/db_xref="GI:126460908"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4895529"
/translation="MTEMPIPTPGTPSPQPEAIVGRSLWQDAWIRLRRNRAAVASALV
LAFLGLVGIFGPMLSPHDYTRVYPQFVRAPASLEPYPRADVVIPSFERTMARARIEGA
PVLENGTVSVRIEDEDPIDDRILRYFQRSDLFINPRLDLAPDGLSGTLSADVEQLYFL
FGTDAVGRDLMSRIFIGVRISLAIGLLASAMALLLGVTYGAISGYLGGRVDNVMMRIV
DVLYSLPFIFFVILLVVFFGRNLVIIFIAIGATEWLDMARIVRGQTLSLKRQEFVQAA
EALGATRAGILMRHVVPNTLGPVIVFVTLLVPKAILLESLLSFLGLGVQEPLTSLGLL
ISEGAANMRGAPWLLIWPALTLTAILFALNFLGDGLRDSLDPKDR"
misc_feature complement(<145480..145824)
/locus_tag="Rsph17029_0130"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(145498..145500,145507..145512,
145552..145554,145603..145605,145612..145617,
145627..145629,145633..145638,145645..145647,
145651..145653,145657..145662,145711..145713,
145717..145722,145729..145758,145762..145773,
145801..145803,145816..145821))
/locus_tag="Rsph17029_0130"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(145711..145755)
/locus_tag="Rsph17029_0130"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(145531..145533,145543..145548,
145564..145602))
/locus_tag="Rsph17029_0130"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(146405..147328)
/locus_tag="Rsph17029_0131"
/db_xref="GeneID:4895236"
CDS complement(146405..147328)
/locus_tag="Rsph17029_0131"
/note="PFAM: binding-protein-dependent transport systems
inner membrane component;
KEGG: rsp:RSP_1480 ABC oligopeptide transporter, inner
membrane subunit OppB"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_001042023.1"
/db_xref="GI:126460909"
/db_xref="InterPro:IPR000515"
/db_xref="GeneID:4895236"
/translation="MLRYTLRRLASAVPTVFIIVTLTFFMIRLAPGGPFDLERPLDPL
IMENLKRAYNLDGSLWSQYLTYMGNLMQGDLGPSFTKRDFTVNDLFASGLPISMLLGG
LAISLAVAIGTILGAIAALRQNSWLDYTIVGLATFGITTPNFVVAPLLSLFFGVILRW
LPAGGWSSSDPAYWVLPVVTLALPQVAVIARLVRGATIEALRSNHVRTARAYGLPART
VVVKHALRAAMLPAVSYLGPTAAGLLTGSVVVETIFGLPGIGRYFVQGALGRDYTLVM
GTVVVIALFILLFNLIVDLLYTLLDPRVRYD"
misc_feature complement(146411..147328)
/locus_tag="Rsph17029_0131"
/note="oligopeptide transporter permease; Reviewed;
Region: oppB; PRK09471"
/db_xref="CDD:181886"
misc_feature complement(146444..146965)
/locus_tag="Rsph17029_0131"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(146444..146449,146456..146461,
146468..146473,146477..146482,146489..146494,
146543..146548,146573..146578,146585..146596,
146615..146617,146624..146629,146669..146671,
146720..146722,146729..146734,146744..146746,
146750..146755,146762..146764,146768..146770,
146774..146779,146876..146878,146882..146887,
146894..146923,146927..146938))
/locus_tag="Rsph17029_0131"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(146579..146596,146876..146920))
/locus_tag="Rsph17029_0131"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(146492..146494,146543..146545,
146552..146554,146576..146578,146792..146794,
146876..146878))
/locus_tag="Rsph17029_0131"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(146648..146650,146660..146665,
146681..146719))
/locus_tag="Rsph17029_0131"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(147385..148974)
/locus_tag="Rsph17029_0132"
/db_xref="GeneID:4895266"
CDS complement(147385..148974)
/locus_tag="Rsph17029_0132"
/note="PFAM: extracellular solute-binding protein, family
5;
KEGG: rsp:RSP_1481 ABC oligopeptide transporter,
perplasmic substrate-binding protein OppA"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_001042024.1"
/db_xref="GI:126460910"
/db_xref="InterPro:IPR000914"
/db_xref="GeneID:4895266"
/translation="MTLFSLRAGACALALMAGTAGMAAAQVTIVRGNDTDPATLDHHL
TSTVAESRIMNDLYEGLVVQDAQAKVVPGVAESWEISEDGLTYTFKLRDDAKWSNGDP
VVAEDFVFALRRIMTPATAAVYANILYPIANAEAIATGAKQPEELGVEAVDAHTLKFT
LNAPTPYFLELLTHQSSLPMHRATVEAEGSNFTKPGVMVTNGAYKLVSFVPNDRIVME
KNEHFHGAANVAIDRVEWVPFEDRSACLRRFEAGEVQMCTDVPAEQMAYMRENLKDEL
HIAPYLGTYYLPVKGADGSPLKDKRVRQAISMVLDRDFIAEEVWQETMLPGYSMVPPG
ISNYVETPPALDYADEDLLDREDKAKALLEEAGVAEGSLTVQLSYNSSENHRNTMTAI
ADMLKNIGINATLNEMEGTNYFNYLKEGGAYDIVRAGWIGDYSDPQNFLFLFEGGVPF
NYPRWENAEYDALMDKAAVTQDLGQRAQIMADAETILLDEVPAIPLLTYSSRALVSGK
VQGYADNLPDVHLTRWLSLAE"
misc_feature complement(147388..148893)
/locus_tag="Rsph17029_0132"
/note="ABC-type oligopeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
OppA; COG4166"
/db_xref="CDD:33908"
misc_feature complement(147400..148893)
/locus_tag="Rsph17029_0132"
/note="The substrate-binding component of an ABC-type
oligopetide import system contains the type 2 periplasmic
binding fold; Region: PBP2_OppA; cd08504"
/db_xref="CDD:173869"
misc_feature complement(order(147478..147480,147676..147690,
147694..147696,147745..147747,148132..148134,
148201..148203,148822..148824))
/locus_tag="Rsph17029_0132"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173869"
STS 148284..149312
/standard_name="Tbxas1"
/db_xref="UniSTS:265585"
gene complement(149421..149762)
/locus_tag="Rsph17029_0133"
/db_xref="GeneID:4897408"
CDS complement(149421..149762)
/locus_tag="Rsph17029_0133"
/note="KEGG: rpc:RPC_4596 FAD-dependent pyridine
nucleotide-disulphide oxidoreductase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042025.1"
/db_xref="GI:126460911"
/db_xref="GeneID:4897408"
/translation="MQDENFASERRAAAAVARRSRGDRQRRQPRFACILVGTGPAGLT
AAISVLLLGGGQSRALLIPRSPNPPALPKGIRSAGRLSRMRGRPGIAPEPGRGVTLGC
PDGGEERFDAV"
misc_feature complement(<149508..149666)
/locus_tag="Rsph17029_0133"
/note="Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones]; Region: TrxB;
COG0492"
/db_xref="CDD:30838"
gene 149816..150175
/locus_tag="Rsph17029_0134"
/db_xref="GeneID:4895123"
CDS 149816..150175
/locus_tag="Rsph17029_0134"
/note="KEGG: rsp:RSP_1483 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042026.1"
/db_xref="GI:126460912"
/db_xref="GeneID:4895123"
/translation="MIATDDPLQDRPRAGGQDRTEKRLAGAVRVMACEAAPLEAAAPP
AEGAILRLERDPQRPFASGAVLLLDEAGRAVAQLSALPVRMLAALLDNGCESFALVEQ
TGSRVSVAIHLAAPFWG"
gene complement(150248..152629)
/locus_tag="Rsph17029_0135"
/db_xref="GeneID:4895575"
CDS complement(150248..152629)
/locus_tag="Rsph17029_0135"
/note="PFAM: helicase domain protein; DbpA, RNA-binding
domain protein; DEAD/DEAH box helicase domain protein;
SMART: DEAD-like helicases-like;
KEGG: rsp:RSP_1485 ATP-dependent RNA helicase"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_001042027.1"
/db_xref="GI:126460913"
/db_xref="InterPro:IPR000629"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR005580"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:4895575"
/translation="MAVNPGAAARPPFGRYMTQTDIAAPLAAALAAKGYESLTPVQEA
VLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELA
LQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRDHIERGSLD
LSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALAKEFQQD
AVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAVNHLL
ARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVIHA
DLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE
VQERDDARLLEHPVLGQDLSDEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQD
LAPPEPSQRAPRERGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKNEIGAIRV
QQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERAPRARD
EAPRREKAPYQPKPSRFVEEEPGEARGGWTPDDRPERAPRPRREDGAPFAKREMNDAP
RPRRESAAEDEGRKPRRTSDERPARPAAAGRSAGFKSHGGTASRSAGYKSHGDAAPRG
KRDDEGPRPYKPRGEDAPRAAGFKSHGKPVRAEGDGPRARPARSADDRPAKAGGFKAR
EDRPAKPRAEGAAERPARSGFKKDFGKKDAPRKPRAEASDTSRRFTPPKKPRS"
misc_feature complement(151100..152533)
/locus_tag="Rsph17029_0135"
/note="Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis]; Region:
SrmB; COG0513"
/db_xref="CDD:30859"
misc_feature complement(151964..152533)
/locus_tag="Rsph17029_0135"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature complement(152432..152446)
/locus_tag="Rsph17029_0135"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(152111..152122)
/locus_tag="Rsph17029_0135"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(152021..152029)
/locus_tag="Rsph17029_0135"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature complement(151544..151933)
/locus_tag="Rsph17029_0135"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(151676..151684,151757..151762,
151820..151831))
/locus_tag="Rsph17029_0135"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(151574..151576,151583..151585,
151595..151597,151658..151660))
/locus_tag="Rsph17029_0135"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(<151079..151219)
/locus_tag="Rsph17029_0135"
/note="DbpA RNA binding domain; Region: DbpA; pfam03880"
/db_xref="CDD:202795"
gene 152772..153377
/locus_tag="Rsph17029_0136"
/db_xref="GeneID:4896649"
CDS 152772..153377
/locus_tag="Rsph17029_0136"
/note="PFAM: regulatory protein, TetR;
KEGG: rsp:RSP_1486 regulatory protein, TetR family"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001042028.1"
/db_xref="GI:126460914"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:4896649"
/translation="MTTGDGRSRLLAAATRLIRTQGFAATSVEAICREAGVTKGAFFH
HFPSKEALGVAAAEAWSDVTGRLFAEAPYHRPADPLDRVLAYIDFRRALVAGEIADYT
CLVGTLVQEAYGSDPIRAACGASILGHAGTLEADMAAAAEARGVADVDPASLARHTQA
VLQGAFILAKAGGGAAAVEEALDHLKRYLRLLFANPGASGA"
misc_feature 152772..>153107
/locus_tag="Rsph17029_0136"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 152799..152939
/locus_tag="Rsph17029_0136"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 153444..153791
/locus_tag="Rsph17029_0137"
/db_xref="GeneID:4896668"
CDS 153444..153791
/locus_tag="Rsph17029_0137"
/note="PFAM: protein of unknown function DUF1428;
KEGG: rsp:RSP_1487 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042029.1"
/db_xref="GI:126460915"
/db_xref="InterPro:IPR009874"
/db_xref="GeneID:4896668"
/translation="MPYVDGFVCAVPVENRQKYIDHALFAARKFKEVGALQVVECWGD
DVPEGKLTSFRMAVKQEEGEAAIFSWVVWPSKEVRNAAWQKMMEDTEMAGMEMPFDGK
RMIYGGFEQVVEV"
misc_feature 153447..153749
/locus_tag="Rsph17029_0137"
/note="Protein of unknown function (DUF1428); Region:
DUF1428; pfam07237"
/db_xref="CDD:148694"
gene 153793..154536
/locus_tag="Rsph17029_0138"
/db_xref="GeneID:4896284"
CDS 153793..154536
/locus_tag="Rsph17029_0138"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: rsp:RSP_1488 possible glyoxalase"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_001042030.1"
/db_xref="GI:126460916"
/db_xref="InterPro:IPR004360"
/db_xref="GeneID:4896284"
/translation="MGGFVWHELTTADPDGAAAFYGRLLGWEAETFPGSAPPYLVLKA
ADVGVAGLCAAKAPQPAGWIGYLHVADVEEACRRAEAAGGTAVAPAEEMEGIGRMQLM
RDPDGVPFVLMTPAPREAPPRPPEGTTGLSVWDEHYGADVERSFAFYAGLAGWTKDSA
MDMGEMGTYQMVAAGGRAIAGLMRAPEAMGPRWLAYFNVPSVTGAMEEAERLGGRPFF
GPQEVPGAMWIAQILDPQGHPFGIVGPKG"
misc_feature 153802..154134
/locus_tag="Rsph17029_0138"
/note="N-terminal domain of Streptomyces griseus SgaA
(suppression of growth disturbance caused by A-factor at a
high concentration under high osmolality during early
growth phase), and similar domains; Region: SgaA_N_like;
cd07247"
/db_xref="CDD:176671"
misc_feature 154189..154518
/locus_tag="Rsph17029_0138"
/note="N-terminal domain of Streptomyces griseus SgaA
(suppression of growth disturbance caused by A-factor at a
high concentration under high osmolality during early
growth phase), and similar domains; Region: SgaA_N_like;
cd07247"
/db_xref="CDD:176671"
gene 154668..155582
/locus_tag="Rsph17029_0139"
/db_xref="GeneID:4895125"
CDS 154668..155582
/locus_tag="Rsph17029_0139"
/note="TIGRFAM: thioredoxin;
PFAM: Tetratricopeptide TPR_4; Thioredoxin domain;
KEGG: rsp:RSP_1489 protein containing thioredoxin domain"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001042031.1"
/db_xref="GI:126460917"
/db_xref="InterPro:IPR005746"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013766"
/db_xref="GeneID:4895125"
/translation="MLGFGDKPANGAAPQGDLVKDTSEATFMQDVIDASRDVPVIVDF
WAPWCGPCKTLGPALEAAVTAAKGKVRMVKVNVDENQMIAAQLRIQSIPTVYAFFQGQ
PVDGFQGALPPSEVKKFVEKIAAMGGDDGLADALAAAEEMLAEGAVVDALETFAAILG
EEPENAAAYAGLIRCHLASGDLDQAEAYAAAAPAAIAKAKEIEGARAQIELARQAAKA
GPVTELSRAVEADPANHQARFDLALALHASGRVDEAVDQLLELFRRDREWNEGAARTQ
LFTIFDALKPTDPIVLKGRRRLSSMIFA"
misc_feature 154689..155576
/locus_tag="Rsph17029_0139"
/note="Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones]; Region: COG3118"
/db_xref="CDD:32932"
misc_feature 154752..155030
/locus_tag="Rsph17029_0139"
/note="ybbN protein family; ybbN is a hypothetical protein
containing a redox-inactive TRX-like domain. Its gene has
been sequenced from several gammaproteobacteria and
actinobacteria; Region: ybbN; cd02956"
/db_xref="CDD:48505"
misc_feature 155334..155432
/locus_tag="Rsph17029_0139"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
gene 155586..156254
/locus_tag="Rsph17029_0140"
/db_xref="GeneID:4895704"
CDS 155586..156254
/locus_tag="Rsph17029_0140"
/note="PFAM: peptidase S16, lon domain protein;
KEGG: rsp:RSP_1490 putative ATP-dependent protease La,
LON"
/codon_start=1
/transl_table=11
/product="peptidase S16, lon domain-containing protein"
/protein_id="YP_001042032.1"
/db_xref="GI:126460918"
/db_xref="InterPro:IPR003111"
/db_xref="GeneID:4895704"
/translation="MGRASSEPMIKQADLPDVIPVFPLPGALLLPRARLPLHIFEPRY
LQMLDDTLKTPNRLIGMVQPRDVPGGAEKRLHAIGCAGRLTGFSETEDGRYMITLSGI
SRFRVISEVQGFTPYRRCTVDWADFSRDLGPAETDAGFRREAFLDLLGRYFTAMELST
DWGSLREAEEELLINSLSMLCPFDPEDKQALLEAPSLETRRETLVTLIEFALRGGTGE
EVMQ"
misc_feature 155607..156212
/locus_tag="Rsph17029_0140"
/note="Uncharacterized protein, similar to the N-terminal
domain of Lon protease [General function prediction only];
Region: COG2802"
/db_xref="CDD:32634"
gene 156251..156430
/locus_tag="Rsph17029_0141"
/db_xref="GeneID:4895866"
CDS 156251..156430
/locus_tag="Rsph17029_0141"
/note="PFAM: protein of unknown function DUF343;
KEGG: rsp:RSP_1491 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042033.1"
/db_xref="GI:126460919"
/db_xref="InterPro:IPR005651"
/db_xref="GeneID:4895866"
/translation="MIGNTLFDRRMLEALVCPVTQAGLAYDADRQELISKQARLAFPI
RDGIPIMLVSEAREL"
misc_feature 156272..156427
/locus_tag="Rsph17029_0141"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2835"
/db_xref="CDD:32663"
gene complement(156507..157736)
/locus_tag="Rsph17029_0142"
/db_xref="GeneID:4895743"
CDS complement(156507..157736)
/locus_tag="Rsph17029_0142"
/note="TIGRFAM: Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family;
PFAM: monooxygenase, FAD-binding;
KEGG: rsp:RSP_1492 UbiH/COQ6 monooxygenase family"
/codon_start=1
/transl_table=11
/product="UbiH/UbiF/VisC/COQ6 family ubiquinone
biosynthesis hydroxylase"
/protein_id="YP_001042034.1"
/db_xref="GI:126460920"
/db_xref="InterPro:IPR002938"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR010971"
/db_xref="GeneID:4895743"
/translation="MTQAADILIAGGGLNGPALALALARNGFSVTVVDGRPAPQRAEP
GFDGRAYALALASKRLLAALGLWDGLASQAQPILRVVTADGTTAGGPSPFVLAFDHAE
IEEGPMGYLLEDRFLYAAFLAALEAEPRIRLVSGTTVEAQEVGPQGVTVTLSTGAQLS
GRLLVGCDGRQSGTARRAGIRRSGWGYGQTALVTAIEHERPHEGTAWQYFLPAGPLAI
LPLPGGHRSSIVWSESDAAAAGIQRLPDADYLGALRPRFGDFLGSIRLAGDRFTYPLS
LSLAHSFVAPRVALVGDAAHGVHPIAGQGLNLGLRDVAALAEVLTLAARRGEDVGSPL
VLDRYQQWRRFDATALALGMDMVNRLFSNDNPMLRAGRDLGMGIVNALPGLRRGFIRQ
AAGLSGDLPRLLQGRPI"
misc_feature complement(156540..157652)
/locus_tag="Rsph17029_0142"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(156510..157649)
/locus_tag="Rsph17029_0142"
/note="2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional; Region: PRK07333"
/db_xref="CDD:180935"
gene 157818..159143
/locus_tag="Rsph17029_0143"
/db_xref="GeneID:4896589"
CDS 157818..159143
/locus_tag="Rsph17029_0143"
/note="PFAM: Amidase;
KEGG: rsp:RSP_1493 amidase"
/codon_start=1
/transl_table=11
/product="amidase"
/protein_id="YP_001042035.1"
/db_xref="GI:126460921"
/db_xref="InterPro:IPR000120"
/db_xref="GeneID:4896589"
/translation="MDRLWMTAAELGRGIEAGRIHPVELAEAFLAAAADHPEGTRIYA
RLCPTRARTEAMAAAERAKRGLRRGPLDGVPVSWKDLFDTAGVATEAGSALLKGRVPE
EDAAVLGTATLGGLVCLGKTHMSELAFSGLGLNPVTATPPCVNDPAAVAGGSSSGAAA
SVAFGLAPAAIGSDTGGSVRIPAAWNDLAGLKTTAGRLSLAGTVPLAARFDTVGPLAR
TVEDCALLLAVLEGGRPADLRGASLAGRRFLVLETLALEDLREAPARGFEEAVARLAR
AGARIERGAAPEVVEAMAMAGPLFTGEAYATWAEVIEGAPDLMFPRILERFRSGASIT
AVEFVTAWQRLEALRAAWAARTAGYDAVLVPTSPILPPDAKRLLTDESYYVGENLLAL
RNTRIANLMGLPALTLPTGQPSCGISLMGQPMGEERLLRLGAAAERALG"
misc_feature 157833..159050
/locus_tag="Rsph17029_0143"
/note="hypothetical protein; Provisional; Region:
PRK06102"
/db_xref="CDD:180400"
misc_feature 157938..159044
/locus_tag="Rsph17029_0143"
/note="Amidase; Region: Amidase; cl11426"
/db_xref="CDD:212316"
gene 159266..160444
/locus_tag="Rsph17029_0144"
/db_xref="GeneID:4895574"
CDS 159266..160444
/locus_tag="Rsph17029_0144"
/note="PFAM: aminotransferase, class I and II;
KEGG: rsp:RSP_1494 putative aspartate aminotransferase"
/codon_start=1
/transl_table=11
/product="class I and II aminotransferase"
/protein_id="YP_001042036.1"
/db_xref="GI:126460922"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:4895574"
/translation="MAFPERFSNLPDYAFPRLRKLLDPHAPGGEPVAMTIGEPKHPMP
EFVGPVLAESLAGFGLYPPNDGTPELLSAIGGWLKRRYRVDLGPERLMVLNGTREGLF
NAALALVPETKRGARPVVLMPNPFYQVYAMAALALGAEPVYVPALASNGFLPDYASLP
AEILERTALAYLCSPANPQGSVASRDYWAGLMDLAETHDFRLFADECYAEIWRTAPPA
GALEVADATGADPERIFAFHSLSKRSNLPGLRSGFVAGGPEGIARIRQLRAFAGAPLP
LPVQRVSERAWADETHVEANRALYQEKFRIADEVFSGLQGYMGPEGGFFLWLPVPDGE
EAALKLWTETGVRVLPGAYLAREVGGENPGKGYIRVAMVAPKDEMQRGLVRLRDCLYG
"
misc_feature 159287..160429
/locus_tag="Rsph17029_0144"
/note="succinyldiaminopimelate transaminase; Region:
DapC_gpp; TIGR03538"
/db_xref="CDD:163314"
misc_feature 159365..160429
/locus_tag="Rsph17029_0144"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(159551..159559,159644..159646,159794..159796,
159887..159889,159980..159982,159986..159991,
160013..160015)
/locus_tag="Rsph17029_0144"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(159560..159562,159674..159676,159866..159868,
160007..160015,160100..160102,160109..160111)
/locus_tag="Rsph17029_0144"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 159989..159991
/locus_tag="Rsph17029_0144"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 160455..163739
/locus_tag="Rsph17029_0145"
/db_xref="GeneID:4895639"
CDS 160455..163739
/locus_tag="Rsph17029_0145"
/note="PFAM: cell divisionFtsK/SpoIIIE;
KEGG: rsp:RSP_1495 putative cell division protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsK"
/protein_id="YP_001042037.1"
/db_xref="GI:126460923"
/db_xref="InterPro:IPR002543"
/db_xref="GeneID:4895639"
/translation="MASYHARQRDPLLDQNMQAMLERRGRELLGIGLLIVAFLFMLIL
GTYSPEDPGWMVATDEPAQNALGRIGAAISSTLMIIAGKGSWGLPIVAGAWGARFLLH
RGEERALGRIVFAVIAIALGSIYAATHVPGSEWTHSFGLGGLFGDTVLGALLEILPLP
AAYGLKLLSLLVGGGLVAMGLFVCGFDLRELRQVTQFLLVGLVVTYNAALQLAGRGSV
QAAQLMQEKIRAHREGRAAVDAAAVRGEARAEAMPRPRSRFRDPEPEPEPAPRMGFLS
RLRAQAPEDDPEPVIEEAAWGRPATLRADTTRPAALRSEGLRAEPRHVEPAPAPAQPR
TGLLARMPQIIRRVTDPEAELVEHALSDAAANAEGPTEDRIKARINDVIRSRVRQSTG
PLSPIAAAIARREPPMARRRSGPAPMVASRRAPMELPPEPPVVAGAGEKIRFASGMVA
SRMPGAATARLAVSALEADAAPAHAPRLMAEAYDAYEACETGEPILTAREQLAYADED
EAAAYDEAYAAEEEVESYAAEEAAWLPHEDFDDSTDWAPEPAAPAAPMMAPAMAPKPA
AAPAARAPAVRPPEAQPKPRFEEQEAHYELPPLSLLACPSTIVRNTLSVDALKENARM
LESVLEDYGVKGEIVDAQAGPVVTLYELEPAPGLKASRVIGLADDIARSMSALSARVS
TVPGRTVIGIELPNVSREKVILREILAARDFGDSSMRLPLALGKDIAGRPVVANLAKM
PHLLIAGTTGSGKSVAINTMILSLLYKLTPEECRLIMIDPKMLELSVYDGIPHLLSPV
VTDPKKAVVALKWVVGEMEERYRKMSKLGVRNIEGYNGRVSEALEKGEMFKRTIQTGF
DEDTGEPVFETEDLQPVRLPFIVVVVDEMADLMMVAGKEIEACIQRLAQMARASGIHL
IMATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEQGAEQLLGMGDMLYMAGG
AKITRIHGPFVSDEEVEEIVNHLKSFGPPKYMSGVVEGPEDDRADDIDAVLGLGGNTD
SEDALYDQAVAIVAKDRKCSTSYIQRKLGIGYNKAARLVEQMEEQGVVTAANHVGKRE
ILLPEQ"
misc_feature 160560..160925
/locus_tag="Rsph17029_0145"
/note="Domain of unknown function (DUF4117); Region:
DUF4117; pfam13491"
/db_xref="CDD:205669"
misc_feature 162564..163223
/locus_tag="Rsph17029_0145"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature 163536..163736
/locus_tag="Rsph17029_0145"
/note="Ftsk gamma domain; Region: Ftsk_gamma; pfam09397"
/db_xref="CDD:204229"
gene 163871..164509
/locus_tag="Rsph17029_0146"
/db_xref="GeneID:4896354"
CDS 163871..164509
/locus_tag="Rsph17029_0146"
/note="PFAM: outer membrane lipoprotein carrier protein
LolA;
KEGG: rsp:RSP_1497 putative outer membrane lipoprotein
carrier protein"
/codon_start=1
/transl_table=11
/product="outer membrane lipoprotein carrier protein LolA"
/protein_id="YP_001042038.1"
/db_xref="GI:126460924"
/db_xref="InterPro:IPR004564"
/db_xref="GeneID:4896354"
/translation="MRSPRGAPSFITMKPMRLILAPLAFLALALPAAAEKIPLSALSS
YLNGLSTAEADFTQVNADGSVSTGRIFIKRPGRVRFEYAPPEKSLVVAGGGQVAIFDA
KSNQPPEQYPLSRTPLSLILAQNIDLGRAKMVVGHREDKNTTRVVAQDPAHPEYGTIE
MVFTANPVALRQWVITDDAGNQTTVILGAMAQGRNLPASLFSIQSEAAKRSR"
misc_feature 164009..164479
/locus_tag="Rsph17029_0146"
/note="Outer membrane lipoprotein carrier protein LolA;
Region: LolA; pfam03548"
/db_xref="CDD:190672"
gene complement(164571..165152)
/locus_tag="Rsph17029_0147"
/db_xref="GeneID:4896660"
CDS complement(164571..165152)
/locus_tag="Rsph17029_0147"
/note="KEGG: rsp:RSP_1496 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042039.1"
/db_xref="GI:126460925"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4896660"
/translation="MSRLLRAAILLVFLASCGGGRYSPPRDLENACSIVAERPQYYRA
MKATERRWGIPVSVQMATIHQESKFVGNARTPHQFLLGIIPMGRQSSAYGYSQALDGT
WEEYMDERRKRRARRDRIEDATDFMGWYMDGTTRRLGIPKWDATNQYLAYHEGRTGYS
RGSHNAKPWLLAVAQRVGDREQRYRAQLTSCRR"
misc_feature complement(164580..165152)
/locus_tag="Rsph17029_0147"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4764"
/db_xref="CDD:34377"
misc_feature complement(164649..164987)
/locus_tag="Rsph17029_0147"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature complement(order(164697..164699,164763..164765,
164856..164858,164955..164957))
/locus_tag="Rsph17029_0147"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature complement(164955..164957)
/locus_tag="Rsph17029_0147"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
gene 165384..165749
/locus_tag="Rsph17029_0148"
/db_xref="GeneID:4895363"
CDS 165384..165749
/locus_tag="Rsph17029_0148"
/note="TIGRFAM: hemimethylated DNA binding protein;
PFAM: Hemimethylated DNA-binding region;
KEGG: rsp:RSP_1498 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hemimethylated DNA binding protein"
/protein_id="YP_001042040.1"
/db_xref="GI:126460926"
/db_xref="InterPro:IPR011722"
/db_xref="GeneID:4895363"
/translation="MAAGIMEWSGVRDMLKTQAKYHLGQVLRHRKHPFRGVVFDVDAM
FANTEEWYDAIPEESRPSRDQPFYHLLAENDQSYYVAYVSEQNLVPDDTGEPVEHPDL
AELFGEFEDGRYPLQFQLN"
misc_feature 165435..165734
/locus_tag="Rsph17029_0148"
/note="Hemimethylated DNA-binding protein YccV like;
Region: YccV-like; pfam08755"
/db_xref="CDD:204053"
gene complement(165790..167418)
/locus_tag="Rsph17029_0149"
/db_xref="GeneID:4896168"
CDS complement(165790..167418)
/locus_tag="Rsph17029_0149"
/EC_number="2.3.2.2"
/note="PFAM: gamma-glutamyltranspeptidase;
KEGG: rsp:RSP_1499 probable gamma-glutamyltranspeptidase"
/codon_start=1
/transl_table=11
/product="gamma-glutamyltransferase"
/protein_id="YP_001042041.1"
/db_xref="GI:126460927"
/db_xref="InterPro:IPR000101"
/db_xref="GeneID:4896168"
/translation="MENVSHASRLLPDQEDDMRDFHLPGRSAVYAGNGLCATSHPLAS
KVVIDILQAGGNAADAAIAAAVLLGICEPQMTGIGGDCFVLLKPPGEDRIVALNGSGR
APAGLSAALMREKGHATVPLHGPEAVTVPGAVDAFCRLSADWGNLELAQVLAPAIQYA
EEGVPVAPRTAFDWALAKEKLQGAARQYYLVDGAAPRAGQIFRAAGQAEVLRRIAQQG
RAGFYEGEVAEDMVTSLRSVGGTHMLEDFAATACNYGEPISGTYKGVELVEHPPNGQG
ATAILMLNILSQFDVAAMDPFGTARAHLEAEAAKLAYDARNRFLADPDHVRRLDHMLS
PQTAERLAALIDPTRAMPEAAPLSEAVHRDTVYLTVVDRDRMAVSLIYSVYHSFGSGL
ASARFGINFQNRGAGFCLTKGHANEAMGAKRPMHTIIPGMIRRNGRVIVPFGVMGGAY
QPAGHARFVSNLVDFGMDPQEAIDAPRSFSGPDGMLVERGYDERVRAELAAMGHDVRV
PHEPIGGAQAILIGEDGVLVGASDPRKDGCALGY"
misc_feature complement(165793..167337)
/locus_tag="Rsph17029_0149"
/note="Gamma-glutamyltransferase [Amino acid transport and
metabolism]; Region: Ggt; COG0405"
/db_xref="CDD:30754"
misc_feature complement(165808..167205)
/locus_tag="Rsph17029_0149"
/note="Gamma-glutamyltranspeptidase; Region:
G_glu_transpept; pfam01019"
/db_xref="CDD:201554"
gene complement(167479..168021)
/locus_tag="Rsph17029_0150"
/db_xref="GeneID:4895896"
CDS complement(167479..168021)
/locus_tag="Rsph17029_0150"
/note="KEGG: rsp:RSP_1500 possible anti-sigma regulatory
kinase"
/codon_start=1
/transl_table=11
/product="putative anti-sigma regulatory factor"
/protein_id="YP_001042042.1"
/db_xref="GI:126460928"
/db_xref="GeneID:4895896"
/translation="MPSEGDPASASYRLRLDSRPLAVRAALTELADCPPLRALPAEAR
DAAQILLAEVLNNCTEHAYAGSAGPVEVALDLRRGQLSCEVADRGRPMPGAGPEARPG
LPCPVLSLREGGFGWMLIRALAEELRYCHEDGVNRLSFRVARTCLAAPEPCRCPRTAI
SPESGCESAPGDCEGRACSG"
misc_feature complement(167599..167976)
/locus_tag="Rsph17029_0150"
/note="Histidine kinase-like ATPase domain; Region:
HATPase_c_2; pfam13581"
/db_xref="CDD:205759"
misc_feature complement(<167641..167880)
/locus_tag="Rsph17029_0150"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(167671..167682,167746..167751,
167755..167757,167761..167763,167767..167769,
167842..167844,167851..167853,167863..167865))
/locus_tag="Rsph17029_0150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(167851..167853)
/locus_tag="Rsph17029_0150"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(167674..167676,167680..167682,
167749..167751,167755..167757))
/locus_tag="Rsph17029_0150"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(168011..168334)
/locus_tag="Rsph17029_0151"
/db_xref="GeneID:4895505"
CDS complement(168011..168334)
/locus_tag="Rsph17029_0151"
/note="TIGRFAM: anti-anti-sigma factor;
PFAM: Sulfate transporter/antisigma-factor antagonist
STAS;
KEGG: rsp:RSP_1501 antisigma-factor antagonist (STAS)
domain protein"
/codon_start=1
/transl_table=11
/product="anti-sigma-factor antagonist"
/protein_id="YP_001042043.1"
/db_xref="GI:126460929"
/db_xref="InterPro:IPR002645"
/db_xref="InterPro:IPR003658"
/db_xref="GeneID:4895505"
/translation="MDLETEVRGDLLVVRVQEERIDAAAAIEFKDRMRELVDTPASRV
LLDLSCVTFLDSSGLGAVVAVMKLLGPDRRLELATLGPVVRKVFRLTRMDRVFTIHER
VSDAL"
misc_feature complement(168032..168328)
/locus_tag="Rsph17029_0151"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist) domain of anti-anti-sigma factors, key
regulators of anti-sigma factors by phosphorylation;
Region: STAS_anti-anti-sigma_factors; cd07043"
/db_xref="CDD:132914"
misc_feature complement(order(168056..168058,168062..168067,
168077..168079,168140..168145,168152..168160,
168164..168172,168176..168178,168245..168247,
168263..168271,168278..168280))
/locus_tag="Rsph17029_0151"
/note="anti sigma factor interaction site; other site"
/db_xref="CDD:132914"
misc_feature complement(168167..168169)
/locus_tag="Rsph17029_0151"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:132914"
gene 168452..168904
/locus_tag="Rsph17029_0152"
/db_xref="GeneID:4898042"
CDS 168452..168904
/locus_tag="Rsph17029_0152"
/note="KEGG: rsp:RSP_1502 GAF domain protein"
/codon_start=1
/transl_table=11
/product="GAF domain-containing protein"
/protein_id="YP_001042044.1"
/db_xref="GI:126460930"
/db_xref="GeneID:4898042"
/translation="MDYDQLDQTIEALCHGEQDTVALMATVACEIHHAHPLSDWTGFY
RVTGPELLKIGPYQGAHGCLVIPFSRGVCGAAARTGRIQLVPDVEAFPDHIACSSTTR
SEIVLPVRNGEGRLLGVLDLDSNTPAAFTEEDAARLQALLDRTFRDAV"
misc_feature 168458..168880
/locus_tag="Rsph17029_0152"
/note="GAF domain-containing protein [Signal transduction
mechanisms]; Region: COG1956"
/db_xref="CDD:32139"
misc_feature <168578..168874
/locus_tag="Rsph17029_0152"
/note="GAF domain; Region: GAF_2; pfam13185"
/db_xref="CDD:205366"
gene 168956..169292
/locus_tag="Rsph17029_0153"
/pseudo
/db_xref="GeneID:4898008"
gene complement(169308..169568)
/locus_tag="Rsph17029_0154"
/db_xref="GeneID:4895799"
CDS complement(169308..169568)
/locus_tag="Rsph17029_0154"
/note="KEGG: rsp:RSP_1504 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042045.1"
/db_xref="GI:126460931"
/db_xref="GeneID:4895799"
/translation="MTEATTTRDHDKIRKWAEARDGHPAKVETGGKGGILRIDFGEPE
DSLTRIDWDEFFRIFDENKLSFLHQEKTKDGGQSRFNKFVSE"
gene 169652..170299
/locus_tag="Rsph17029_0155"
/db_xref="GeneID:4898077"
CDS 169652..170299
/locus_tag="Rsph17029_0155"
/note="PFAM: pseudouridine synthase;
KEGG: rsp:RSP_1506 pseudouridine synthase, Rlu"
/codon_start=1
/transl_table=11
/product="pseudouridine synthase"
/protein_id="YP_001042046.1"
/db_xref="GI:126460932"
/db_xref="InterPro:IPR006145"
/db_xref="InterPro:IPR006224"
/db_xref="GeneID:4898077"
/translation="MTDLYAPPDVPLSLIHHDAQIVVVDKPAGLLSVPGKGEDKADCL
IERLRGVFPEILLVHRLDRDTSGVMVFALTKAAQGALGQQFEKRQTKKIYVARVAGRL
EPREGRVDLPLCVDWPNRPKQHVDPENGRPAQTDWRVVKYLPKETRVRLMPVTGRSHQ
LRVHMAETGHPILGDALYAEGAARDFPRLMLHAESLRVRHPDTGKSLTYSAPCPF"
misc_feature <169664..170296
/locus_tag="Rsph17029_0155"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 169712..170242
/locus_tag="Rsph17029_0155"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(169826..169837,170135..170137)
/locus_tag="Rsph17029_0155"
/note="active site"
/db_xref="CDD:211346"
gene complement(170275..171030)
/locus_tag="Rsph17029_0156"
/db_xref="GeneID:4895812"
CDS complement(170275..171030)
/locus_tag="Rsph17029_0156"
/note="PFAM: metallophosphoesterase;
KEGG: rsp:RSP_1505 putative metallo-phosphoesterase"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_001042047.1"
/db_xref="GI:126460933"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:4895812"
/translation="MRLAVLADIHGNADALEAVRADLALQSPDLVVNLGDCLSGPLEV
ERTADLLMEANWPAVRGNHDRWLVEPEGGTVWETDARPRLSAAQRDWLAALPATRVEA
GAFLCHATPGSDLIYWLHRVTPEGHVAPSPLERISRFADGIAERLILCGHTHLARSVR
LPDGRLVVNPGSVGCPGYEDDAPVPHRVESGTPAACYAILDSKGDDWRVTFRQIPYDH
DRAARLAGRYDRPDWETVLATGWLPPQKGQGAL"
misc_feature complement(170416..171030)
/locus_tag="Rsph17029_0156"
/note="Calcineurin-like phosphoesterase superfamily
domain; Region: Metallophos_2; pfam12850"
/db_xref="CDD:193324"
misc_feature complement(170569..171027)
/locus_tag="Rsph17029_0156"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature complement(order(170575..170577,170707..170709,
170842..170847,170923..170925,171001..171003,
171007..171009))
/locus_tag="Rsph17029_0156"
/note="active site"
/db_xref="CDD:163614"
misc_feature complement(order(170575..170577,170707..170709,
170845..170847,170923..170925,171001..171003,
171007..171009))
/locus_tag="Rsph17029_0156"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene complement(171027..172487)
/locus_tag="Rsph17029_0157"
/db_xref="GeneID:4898062"
CDS complement(171027..172487)
/locus_tag="Rsph17029_0157"
/note="PFAM: aldehyde dehydrogenase;
KEGG: rsp:RSP_1507 aldehyde dehydrogenase"
/codon_start=1
/transl_table=11
/product="aldehyde dehydrogenase"
/protein_id="YP_001042048.1"
/db_xref="GI:126460934"
/db_xref="InterPro:IPR002086"
/db_xref="GeneID:4898062"
/translation="MIERRDFYINGGWTAPAKARDCEVIDPSTEEACAVISLGDQADT
DAAVAAAKAAFEGWAATPPAERLRLVKGILAQYEARKEEMAQAISLEMGAPIDLARNS
QAPCLPWHLTNFLKAFEEIEWVRPLGPHAPNDRIALEPIGVVGLITPWNWPMNQVTLK
VIPALLAGCTCVLKPSEEAPLSSLLFAEFVHDAGLPAGVFNLVNGDGAGVGTQLSSHP
DVEMISFTGSTRAGRAISKAAAESLKRVTLELGGKGANLIFADADERAVERGVKHCFN
NSGQSCNAPTRMLVERPFYDRAVEIAAEVAAKTRVASAHEEGPHIGPVVNKRQFEQIQ
SYIQKGIDEGARLVAGGLGRPDGLNRGFFVRPTVFADVTPGMTIEREEIFGPVLSILP
FETEEEAVRIANDTPYGLTNYVQSEDGARRNRLARRLRSGMVEMNGKSRGAGAPFGGV
KASGRAREGGVWGIEEFLEVKAISGWDPEAEALAAE"
misc_feature complement(171063..172469)
/locus_tag="Rsph17029_0157"
/note="Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138"
/db_xref="CDD:143456"
misc_feature complement(171069..172421)
/locus_tag="Rsph17029_0157"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(171147..171149,171336..171338,
171342..171344,171642..171644,171735..171743,
171786..171788,171795..171797,171804..171815,
171855..171857,171966..171968,172035..172049))
/locus_tag="Rsph17029_0157"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143456"
misc_feature complement(order(171642..171644,171651..171653,
171741..171743,172035..172037))
/locus_tag="Rsph17029_0157"
/note="catalytic residues [active]"
/db_xref="CDD:143456"
gene complement(172949..173024)
/locus_tag="Rsph17029_R0008"
/note="tRNA-Thr3"
/db_xref="GeneID:4898046"
tRNA complement(172949..173024)
/locus_tag="Rsph17029_R0008"
/product="tRNA-Thr"
/db_xref="GeneID:4898046"
gene complement(173191..174639)
/locus_tag="Rsph17029_0158"
/db_xref="GeneID:4896381"
CDS complement(173191..174639)
/locus_tag="Rsph17029_0158"
/note="PFAM: HemY domain protein;
KEGG: rsp:RSP_1508 uncharacterized HemY-like membrane
protein"
/codon_start=1
/transl_table=11
/product="HemY domain-containing protein"
/protein_id="YP_001042049.1"
/db_xref="GI:126460935"
/db_xref="InterPro:IPR010817"
/db_xref="GeneID:4896381"
/translation="MLWSLIKILIFVALVVALTFGASQLMESGGALRLAVGDLELNLG
PLQAVIAALLLILAVWLFLKIVGFLFAVLRFLNGDETAVSRYFDRSREQKGLRALSEG
MMALAAGEPRTAMSRAAKARKYLGQNAMTTLLNAQAAQQAGDSRRAQESYKLLLEDER
TRFVGVRGLLKQKLDEGDTETALALAQKAFEINPKHSETQDILLKLQADLHDWSGARS
TLSAKMKSGALPKAVYKRRDAVLALQTAKDVFDENASIEAREAAILANKQSPDLIPAA
AMAARSYLAQGNKKYATRVLKKAWEAEPHPDLAAAFAEIEPDETPAERLKRFRTLTAI
HPDHDETRMLIAELSLAAEDFPGARRALGDIVARHPTQRALTIMAAVERGEGGDEAVV
RGWLARALTAPRGPQWCCDNCQTVHATWAPICDNCGGFDTLSWREPTQKSTPSATGTE
LLPLIVGAPAARPADPMDEDVIDEKAVEPTSK"
misc_feature complement(173245..174627)
/locus_tag="Rsph17029_0158"
/note="Uncharacterized membrane-bound protein [Function
unknown]; Region: COG3898"
/db_xref="CDD:33686"
misc_feature complement(174208..>174459)
/locus_tag="Rsph17029_0158"
/note="HemY protein N-terminus; Region: HemY_N; pfam07219"
/db_xref="CDD:191703"
gene complement(174650..175951)
/locus_tag="Rsph17029_0159"
/db_xref="GeneID:4898026"
CDS complement(174650..175951)
/locus_tag="Rsph17029_0159"
/note="KEGG: rsp:RSP_6207 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042050.1"
/db_xref="GI:126460936"
/db_xref="GeneID:4898026"
/translation="MSEPESREAGEKKRDGDAPDPQTLSTPEPVEPAAAGEPAPPAAP
VDADPAPLSAAGPDSERALPDEAELMAEMPPATEPERFDPPEEAPAAPPPPPRKTEPQ
RSSGGPAGVVLLLLGGIAGAAGGFAYSRHAQPDWPLANYGQTAQSTAQQREIEQLRAE
LAAASERPAPEPAPAAGPSAEELTAAQDRAAAAEARVAELEAQLAKAPAEGGAPGADT
GALMAEIEALRTQIAEASGSAVSDAQAEAQARIAEAEKAAADLKAEAEAQAQAAVTAA
ALAQVQAAIDAGQTYRAPLDELTAKGVTVPEALSAHAEGGIPTLDTLEDEFPAAAREA
LAVSRRATMGDSWTSRAQAFLLSEAGVRSLAPRAGDGPDAVLSRAEAAVRAGDLQKAL
DEVAALPPEGQQAMAGWTDAVRKRIEAIDAVAALAAAAEGK"
misc_feature complement(174698..>175033)
/locus_tag="Rsph17029_0159"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4223"
/db_xref="CDD:33948"
gene complement(176019..176762)
/locus_tag="Rsph17029_0160"
/db_xref="GeneID:4897148"
CDS complement(176019..176762)
/locus_tag="Rsph17029_0160"
/note="PFAM: Uroporphyrinogen III synthase HEM4;
KEGG: rsp:RSP_6208 putative uroporphyrinogen-III synthase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen III synthase HEM4"
/protein_id="YP_001042051.1"
/db_xref="GI:126460937"
/db_xref="InterPro:IPR003754"
/db_xref="GeneID:4897148"
/translation="MVPQSRPLVTAVLLTRPEAQGARFAAALAEALGPVRLVTSPLMA
PAFLVPAIPLRPDALIFTSETGVEGYRRLAAPELSDVRRAWCVGNRTARAAEAAGLAA
HSAEGDAERLIAAILAADEPGPLLHLRGAESRGEVAPRLAAAGLTAAEAVVYDQRPQP
LSSEARALLTDGAPVIAPLFSPRTARLLAQELARIGGTGPLWVAAMSPAVAEAAAALP
VARLSVAARPDAEALLHAVKALLDAEADA"
misc_feature complement(176175..176729)
/locus_tag="Rsph17029_0160"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature complement(order(176211..176225,176295..176297,
176301..176303,176373..176375,176493..176495,
176568..176576,176715..176717))
/locus_tag="Rsph17029_0160"
/note="active site"
/db_xref="CDD:119440"
misc_feature complement(<176193..176600)
/locus_tag="Rsph17029_0160"
/note="Uroporphyrinogen-III synthase HemD; Region: HEM4;
pfam02602"
/db_xref="CDD:202304"
gene 176835..177929
/locus_tag="Rsph17029_0161"
/db_xref="GeneID:4896426"
CDS 176835..177929
/locus_tag="Rsph17029_0161"
/EC_number="3.4.24.57"
/note="in most organisms, only the N-terminal domain is
present in a single polypeptide; in some archaea this
domain is fused to a kinase domain; this gene is essential
for growth in Escherichia coli and Bacillus subtilis; the
secreted glycoprotease from Pasteurella haemolytica showed
specificity for O-sialoglycosylated proteins; the
Pyrococcus structure shows DNA-binding properties,
iron-binding, ATP-binding, and AP endonuclease activity"
/codon_start=1
/transl_table=11
/product="putative DNA-binding/iron metalloprotein/AP
endonuclease"
/protein_id="YP_001042052.1"
/db_xref="GI:126460938"
/db_xref="InterPro:IPR000905"
/db_xref="GeneID:4896426"
/translation="MSRPLTFLGIESSCDDTAAAVVRAEGTRAEILSSVVDGQTALHA
AFGGVVPEIAARAHAERLDLCVERALEEAGLGLRDLDGIAVTAGPGLIGGVLSGVMLA
KGLAAGTGLPLVGVNHLAGHALTPRLTDGLAFPYLMLLVSGGHCQFLIARGAEEFSRL
GGSIDDAPGEAFDKTAKLLGLPQPGGPSVEAEAASGDPRRFAFPRPMLDRPGCDMSFS
GLKTALLRARDGLVAEKGGLTRADRADLCAGFQAAVVDVLAEKTRRALAFYAAEGAAR
PALAVAGGVAANGPIRAALTSVAEAAGVRFLAPPLRLCTDNAAMIAWAGIERFRAGGR
DGMELSARPRWPLDRSAPALIGSGRKGAKA"
misc_feature 176856..177893
/locus_tag="Rsph17029_0161"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature 176856..>177245
/locus_tag="Rsph17029_0161"
/note="universal bacterial protein YeaZ; Region:
bact_YeaZ; TIGR03725"
/db_xref="CDD:211869"
gene 177926..178843
/gene="gpsA"
/locus_tag="Rsph17029_0162"
/db_xref="GeneID:4898006"
CDS 177926..178843
/gene="gpsA"
/locus_tag="Rsph17029_0162"
/EC_number="1.1.1.94"
/note="catalyzes the NAD(P)H-dependent reduction of
glycerol 3-phosphate to glycerone phosphate"
/codon_start=1
/transl_table=11
/product="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase"
/protein_id="YP_001042053.1"
/db_xref="GI:126460939"
/db_xref="InterPro:IPR006109"
/db_xref="InterPro:IPR006168"
/db_xref="InterPro:IPR011128"
/db_xref="GeneID:4898006"
/translation="MIGILGAGAFGTALAVTLGREQPVTLWARGGTPRLAVDLPEQVR
LTADFGEALAGTVLLAVPMQALGGLLRAEAARLRGRALVACCKGVDLATGLGPTGLIA
EACPGSPAAILTGPSFAADIARGLPTALTLATQDEAAGEALQRQLSTAALRLYRTTDT
VGAELGGALKNVIAIAAGVVIGAGLGQSARAALMTRGYAEMQRLALALGARPETLAGL
SGLGDLVLTCTSDQSRNFRYGQALGAGAAFDGSVTVEGRATARAVVDLAVRHGIDMPI
AAMVDALVEGRVTLPQAIQSLLSRPLKQE"
misc_feature 177929..178825
/gene="gpsA"
/locus_tag="Rsph17029_0162"
/note="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated; Region: gpsA; PRK00094"
/db_xref="CDD:178859"
misc_feature 177929..178342
/gene="gpsA"
/locus_tag="Rsph17029_0162"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 178397..178816
/gene="gpsA"
/locus_tag="Rsph17029_0162"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
C-terminus; Region: NAD_Gly3P_dh_C; pfam07479"
/db_xref="CDD:116100"
gene 178847..179119
/locus_tag="Rsph17029_0163"
/db_xref="GeneID:4898033"
CDS 178847..179119
/locus_tag="Rsph17029_0163"
/note="unknown function; YciI from Haemophilus influenzae
presents crystal structure similarity to a muconolactone
isomerase, but does not seem to catalyze any of the
predicted reactions based on sequence and structure
similarity"
/codon_start=1
/transl_table=11
/product="YciI-like protein"
/protein_id="YP_001042054.1"
/db_xref="GI:126460940"
/db_xref="InterPro:IPR005545"
/db_xref="GeneID:4898033"
/translation="MRVALICTDKAGALQTRLDNRSAHLAYIAETGVVEMAGPFLSPE
GQMTGSLVVLEVGSLAEAEAWAAGDPYAQAGLFESVAISEWKKVVG"
misc_feature 178847..179116
/locus_tag="Rsph17029_0163"
/note="YciI-like protein; Reviewed; Region: PRK12863"
/db_xref="CDD:183800"
gene 179119..179544
/locus_tag="Rsph17029_0164"
/db_xref="GeneID:4898045"
CDS 179119..179544
/locus_tag="Rsph17029_0164"
/note="PFAM: protein of unknown function DUF55;
KEGG: rsp:RSP_1512 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042055.1"
/db_xref="GI:126460941"
/db_xref="InterPro:IPR002740"
/db_xref="GeneID:4898045"
/translation="MACWLFKSEPDAWSWDQQVAKGAEGEEWTGVRNYQARNHMRAMQ
LGDRGFFYHSNIGKEVVGIVEVCGLSAPDSTADDPRWDCVTVRAVEPLPKPVTLEAIK
AEPRLAQMVLVTNSRLSVQPVSEAEWRTICEMGGLRGDR"
misc_feature 179128..179520
/locus_tag="Rsph17029_0164"
/note="EVE domain; Region: EVE; pfam01878"
/db_xref="CDD:202023"
gene 179840..181045
/locus_tag="Rsph17029_0165"
/db_xref="GeneID:4898070"
CDS 179840..181045
/locus_tag="Rsph17029_0165"
/EC_number="4.2.1.20"
/note="catalyzes the formation of L-tryptophan from
L-serine and 1-(indol-3-yl)glycerol 3-phosphate"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_001042056.1"
/db_xref="GI:126460942"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR006653"
/db_xref="InterPro:IPR006654"
/db_xref="GeneID:4898070"
/translation="MSAYLKSHPTHDGFFGPYGGAMLPPPLEPHFAAIREAYGRISKS
ADFIAELRYIRKHFQGRPTPVSHLKNLSALCGGAQIYAKREDLNHTGAHKLNHCMAEG
LLARFMGKTKLMAETGAGQHGVALATAAAYFGMECEIHMGEIDIAKEAPNVTRMKLLG
ATVVPVGFGGRSLKEAVDSCFQSYLAQADTALFAIGSVVGPHPFPMMVRDFQHVVGVE
AREQFLEMTGELPDMVAACVGGGSNAMGIFSGFLDDEVALYGIEPCGTSSKLGDHAAT
IAYGEDGDIHGFRTMVLKDAEGNPAPVHTVASGLDYPGVGPEHAFLHRSGRVTYTGAD
DREALAAFFALSRHEGIIPALESAHAVAFAMREAKAHPGKSILVNLSGRGDKDIDYVT
QTFGFGETA"
misc_feature 179876..181018
/locus_tag="Rsph17029_0165"
/note="tryptophan synthase, beta subunit; Region: trpB;
TIGR00263"
/db_xref="CDD:161793"
misc_feature 179924..181012
/locus_tag="Rsph17029_0165"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature order(180116..180121,180200..180202,180428..180430,
180554..180568,180905..180907,180980..180982)
/locus_tag="Rsph17029_0165"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature 180119..180121
/locus_tag="Rsph17029_0165"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene complement(181203..182594)
/locus_tag="Rsph17029_0166"
/db_xref="GeneID:4895515"
CDS complement(181203..182594)
/locus_tag="Rsph17029_0166"
/EC_number="3.3.1.1"
/note="catalyzes the formation of L-homocysteine from
S-adenosyl-L-homocysteine"
/codon_start=1
/transl_table=11
/product="S-adenosyl-L-homocysteine hydrolase"
/protein_id="YP_001042057.1"
/db_xref="GI:126460943"
/db_xref="InterPro:IPR000043"
/db_xref="GeneID:4895515"
/translation="MADFIVKDLSLADFGRKELDIAETEMPGLMALREEFGASKPLKG
ARIAGSLHMTVQTAVLIETLVALGADVRWASCNIFSTQDHAAAAIAASGVPVFAIKGE
TLEDYWAYTDKIFQFADGTCNMILDDGGDATLYILLGARVEAGETDLIAVPQSDEEVC
LFNQIRKRMAETPGWFTKQRDAIKGVSEETTTGVHRLYDLHKKGLLPFPAINVNDSVT
KSKFDNKYGCKESLVDGIRRATDVMMAGKVAVVCGYGDVGKGSAASLRGAGARVKVTE
VDPICALQAAMDGFEVVVLEDVVQDADIFITTTGNRDVIRIEHMREMKDMAIVGNIGH
FDNEIQVAALKNHKWTNIKDQVDMIEMPSGSRIILLSEGRLLNLGNATGHPSFVMSAS
FTNQVLAQIELWTKGADYQPGVYILPKALDEKVARLHLKKIGVKLTELRPEQADYIGV
KVEGPFKAEHYRY"
misc_feature complement(181224..182594)
/locus_tag="Rsph17029_0166"
/note="S-adenosyl-L-homocysteine hydrolase; Provisional;
Region: PRK05476"
/db_xref="CDD:180110"
misc_feature complement(181230..182570)
/locus_tag="Rsph17029_0166"
/note="S-adenosyl-L-homocysteine hydrolase (AdoHycase)
catalyzes the hydrolysis of S-adenosyl-L-homocysteine
(AdoHyc) to form adenosine (Ado) and homocysteine (Hcy).
The equilibrium lies far on the side of AdoHyc synthesis,
but in nature the removal of Ado and...; Region:
AdoHcyase; cd00401"
/db_xref="CDD:29522"
misc_feature complement(order(181251..181256,181263..181268,
181275..181277,181281..181289,181293..181298,
181305..181307,181347..181349,181431..181433,
181449..181451,181542..181544,181584..181586,
181617..181625,181656..181667,181716..181721,
181728..181739,181743..181769,181788..181793,
181854..181868,181872..181874,181881..181886,
181905..181910,181917..181919,181929..181931,
181944..181946,181950..181952,181998..182003,
182010..182012,182520..182525,182544..182546))
/locus_tag="Rsph17029_0166"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature complement(order(181443..181445,181926..181928,
181938..181940,182025..182030,182211..182213,
182427..182429,182433..182435,182439..182441))
/locus_tag="Rsph17029_0166"
/note="active site"
/db_xref="CDD:29522"
misc_feature complement(order(181443..181445,181464..181466,
181470..181472,181593..181601,181653..181655,
181668..181673,181764..181772,181824..181832,
181836..181838,181923..181925,182019..182027))
/locus_tag="Rsph17029_0166"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene 182717..183673
/locus_tag="Rsph17029_0167"
/db_xref="GeneID:4895205"
CDS 182717..183673
/locus_tag="Rsph17029_0167"
/note="PFAM: glycosyl transferase, family 8;
KEGG: rsp:RSP_1515 hypothetical protein of glycosyl
transferase family"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001042058.1"
/db_xref="GI:126460944"
/db_xref="InterPro:IPR002495"
/db_xref="GeneID:4895205"
/translation="MTVEASRPARSRQAVIFCCNAGYLPFALHAAERIDRLTPGRAFD
ICICHGEEPILVPDSLSRLDVRLIRIDTTGVFTGLRLDPGRTHDVYLRLALPQALAAD
YDRILYLDADIFVQGGDFTALLGLDLGNHPLGAVRDNIQWRTPERRAEQFRRLGIPAA
PYFNAGLLLMDVARYNEMNLLDRCVELGRREASRMIRHDQNLYNAVLRGDWAELSPMW
NWQYSWSARLFEAMRYPHIVHFIGTLKPWADRKGHYSPRFAQSYDRFIADHFPDRPRN
PVSGGLSPDSRMMRRMLVKHFLSSSKLARYLDRFPSDLTVIR"
misc_feature 182756..183463
/locus_tag="Rsph17029_0167"
/note="Glycosyl transferase family 8; Region:
Glyco_transf_8; pfam01501"
/db_xref="CDD:201828"
misc_feature 182756..183457
/locus_tag="Rsph17029_0167"
/note="A4GalT_like proteins catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface; Region: GT8_A4GalT_like; cd04194"
/db_xref="CDD:133037"
misc_feature order(182768..182776,182780..182785,182981..182983,
182990..182992,183044..183052,183128..183130,
183206..183214,183311..183316,183380..183382,
183431..183433,183437..183442,183449..183451)
/locus_tag="Rsph17029_0167"
/note="Ligand binding site; other site"
/db_xref="CDD:133037"
misc_feature order(183044..183046,183050..183052,183431..183433)
/locus_tag="Rsph17029_0167"
/note="metal-binding site"
/db_xref="CDD:133037"
gene 183670..184254
/locus_tag="Rsph17029_0168"
/db_xref="GeneID:4897144"
CDS 183670..184254
/locus_tag="Rsph17029_0168"
/note="PFAM: metal-dependent phosphohydrolase, HD sub
domain;
KEGG: rsp:RSP_1516 putative S-adenosyl L-homocystein
hydrolase"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_001042059.1"
/db_xref="GI:126460945"
/db_xref="InterPro:IPR006674"
/db_xref="GeneID:4897144"
/translation="MKRAWQRMLSGRRLDLLDPTPVDIEIEDIAHGLAFVARWNGQTR
GDFAFSVAEHSLLVEEILGRCQPRVQTRWRLAALLHDAPEYVIGDMISPVKDAIGAQY
GDLDARLTAAIHLRFGLPAQLPLQVKRDIKKADRISAWLEAVQIAGFTETEATRFFGR
PAEAVLDGLEIRLRPPVEVRAAYAARHQELLSAL"
misc_feature 183703..184248
/locus_tag="Rsph17029_0168"
/note="Predicted hydrolases of HD superfamily [General
function prediction only]; Region: COG1896"
/db_xref="CDD:32080"
gene complement(184266..184580)
/locus_tag="Rsph17029_0169"
/db_xref="GeneID:4895877"
CDS complement(184266..184580)
/locus_tag="Rsph17029_0169"
/note="PFAM: histone family protein nucleoid-structuring
protein H-NS;
KEGG: rsp:RSP_1517 histone-like protein of HNS family"
/codon_start=1
/transl_table=11
/product="histone family protein nucleoid-structuring
protein H-NS"
/protein_id="YP_001042060.1"
/db_xref="GI:126460946"
/db_xref="InterPro:IPR001801"
/db_xref="GeneID:4895877"
/translation="MDIDLDSMSLKELKSLQAQVAKAISTYEDRRKRDALAELEEKAR
ELGFSLSELTGTAATKRRAAAQPKYANPENPSDTWSGRGRKPRWFEAAIKSGKPAESM
AI"
misc_feature complement(<184506..>184571)
/locus_tag="Rsph17029_0169"
/note="K-box region; Region: K-box; pfam01486"
/db_xref="CDD:201822"
misc_feature complement(184290..184550)
/locus_tag="Rsph17029_0169"
/note="H-NS histone family; Region: Histone_HNS;
pfam00816"
/db_xref="CDD:201457"
misc_feature complement(184269..184385)
/locus_tag="Rsph17029_0169"
/note="Domain in histone-like proteins of HNS family;
Region: HNS; smart00528"
/db_xref="CDD:128801"
gene complement(184816..185370)
/locus_tag="Rsph17029_0170"
/db_xref="GeneID:4897045"
CDS complement(184816..185370)
/locus_tag="Rsph17029_0170"
/note="PFAM: response regulator receiver;
KEGG: rsp:RSP_1518 PrrA (RegA), response regulator
involved in oxygen regulation of photosynthesis genes"
/codon_start=1
/transl_table=11
/product="two component Fis family transcriptional
regulator"
/protein_id="YP_001042061.1"
/db_xref="GI:126460947"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002197"
/db_xref="GeneID:4897045"
/translation="MAEDLVFELGADRSLLLVDDDEPFLKRLAKAMEKRGFVLETAQS
VAEGKAIAQARPPAYAVVDLRLEDGNGLDVVEVLRERRPDCRIVVLTGYGAIATAVAA
VKIGATDYLSKPADANEVTHALLAKGESLPPPPENPMSADRVRWEHIQRIYEMCDRNV
SETARRLNMHRRTLQRILAKRSPR"
misc_feature complement(184819..185343)
/locus_tag="Rsph17029_0170"
/note="Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription]; Region: COG4567"
/db_xref="CDD:34205"
misc_feature complement(184993..185325)
/locus_tag="Rsph17029_0170"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(185029..185034,185041..185043,
185098..185100,185158..185160,185182..185184,
185311..185316))
/locus_tag="Rsph17029_0170"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(185182..185184)
/locus_tag="Rsph17029_0170"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(185158..185166,185170..185175))
/locus_tag="Rsph17029_0170"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(185026..185034)
/locus_tag="Rsph17029_0170"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(<184840..184920)
/locus_tag="Rsph17029_0170"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:214025"
gene complement(185363..186058)
/locus_tag="Rsph17029_0171"
/db_xref="GeneID:4897591"
CDS complement(185363..186058)
/locus_tag="Rsph17029_0171"
/note="PFAM: electron transport protein SCO1/SenC;
KEGG: rsp:RSP_1519 PrrC"
/codon_start=1
/transl_table=11
/product="electron transport protein SCO1/SenC"
/protein_id="YP_001042062.1"
/db_xref="GI:126460948"
/db_xref="InterPro:IPR003782"
/db_xref="GeneID:4897591"
/translation="MTKLYAGVAAAAIAALLAGSAAWVFLGRSEERFAGCGANQVAGG
AIGGPFTLVDQEGRTVTDREVLAKPSLVYFGYTFCPDVCPFDMARNAQAVDILTEWGI
EVTPVFISIDPKRDTPEQLKFFAEAIHPDTIALTGTEAQVKAASQAYKTFYRVQESDD
DYYLIDHSTFTYFMLPGTGFVDFFKREDTPEQIAERISCFANDSHVSTSFDARAQKSY
QASRGKQMGDNHG"
misc_feature complement(185468..185986)
/locus_tag="Rsph17029_0171"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature complement(185507..185923)
/locus_tag="Rsph17029_0171"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature complement(order(185558..185560,185810..185812,
185822..185824))
/locus_tag="Rsph17029_0171"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene 186150..187538
/locus_tag="Rsph17029_0172"
/db_xref="GeneID:4898009"
CDS 186150..187538
/locus_tag="Rsph17029_0172"
/note="PFAM: ATP-binding region, ATPase domain protein
domain protein; histidine kinase A domain protein domain
protein;
KEGG: rsp:RSP_1520 sensor histidine kinase PrrB (RegB)"
/codon_start=1
/transl_table=11
/product="integral membrane sensor signal transduction
histidine kinase"
/protein_id="YP_001042063.1"
/db_xref="GI:126460949"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4898009"
/translation="MILGPDGILNRDTRGDWVRLRTLILLRWMAVAGQLAAIVVTDWY
LGVRLPMGLCFMAVGASVIANVIATFVFPQNRRLTEFQALMILLFDLTQLSFLLFLTG
GLTNPFALLILAPVTISALALELRTTVILGAIAIGLLTFTAYFHLPLILADGSSLSVP
RMFEFGFWLAIVIGILFLGLYSRRVAIEIRSMSDALLATQMALDREQKLTDLGGVVAA
AAHELGTPLATIKLVSSELAEELSEQPALRDDAELIREQADRCRDILRSMGRAGKDDL
QMRQAPLGEVLREAAEPHVGRGKRVEFDLYPSRGGDERQPVILRRPEVIHGLRNLIQN
AVDFARSTVWIDGEWTGDRIAIRIVDDGEGYPPAIIGRIGDPFVRQRRAEESQSRRPG
YEGMGLGLFIAKTLLERSGAELSFANAADPFLRSHERPERCGAIVEVIWPVDRLVVVR
NAPLGENVLIQT"
misc_feature 186465..187403
/locus_tag="Rsph17029_0172"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 186783..186953
/locus_tag="Rsph17029_0172"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(186792..186794,186804..186806,186816..186818,
186825..186827,186837..186839,186846..186848,
186897..186899,186909..186911,186918..186920,
186930..186932,186939..186941,186951..186953)
/locus_tag="Rsph17029_0172"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 186810..186812
/locus_tag="Rsph17029_0172"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 187131..187412
/locus_tag="Rsph17029_0172"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(187137..187139,187149..187151,187158..187160,
187221..187223,187227..187229,187233..187235,
187239..187244,187338..187349,187395..187397,
187401..187403)
/locus_tag="Rsph17029_0172"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 187149..187151
/locus_tag="Rsph17029_0172"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(187233..187235,187239..187241,187338..187340,
187344..187346)
/locus_tag="Rsph17029_0172"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 187665..189227
/locus_tag="Rsph17029_0173"
/db_xref="GeneID:4897134"
CDS 187665..189227
/locus_tag="Rsph17029_0173"
/note="KEGG: rsp:RSP_1521 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042064.1"
/db_xref="GI:126460950"
/db_xref="GeneID:4897134"
/translation="MTFDWPLALGLILTAVAAASAAVVLAGLLQTRAGRRPEGVFSDS
QAGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPRFPDLEARLSRLARD
GRFTLASAAEGEPLLLMAEMRGGITRLTIDDPSSAERPRLDHLSQRALAEELDQLRAT
VAQAPLMMWRESAGGEVIWANAAYLREAAKRLPPDRDLSWPLPRLFDRAASAQGAPRQ
RQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQAEATLRDFMQTLAKTFAHLPIG
LAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLEALRDRQMIPEPKDYPSWRR
QILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALMFEDISTEMTRTRRYRAD
LELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALWGHDPVETVGGGAAVQLCEQWRAR
SSPSPIWVEAERFLAALGPRDPWSGEIRLEDGRLVSCRFAPLTGGATLVLFRILEVRA
AEAADPATLRTA"
misc_feature 188472..188828
/locus_tag="Rsph17029_0173"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 188862..189197
/locus_tag="Rsph17029_0173"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
gene 189460..189969
/locus_tag="Rsph17029_0174"
/db_xref="GeneID:4895411"
CDS 189460..189969
/locus_tag="Rsph17029_0174"
/note="PFAM: protein of unknown function UPF0079;
KEGG: rsp:RSP_1522 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042065.1"
/db_xref="GI:126460951"
/db_xref="InterPro:IPR003442"
/db_xref="GeneID:4895411"
/translation="MRRGAALGMVAAMPDPAPLLLALASEEDTARLGAALACLLRPGD
VLLLEGPIGAGKTHLARALIRAALGHEEEVPSPTFTLVQTYEAPGHEIWHADLYRLTH
PDEVLELGLEAAFATAVCLVEWPDRLGDLAPPGALRLRLEAEGEGRRATLSGGRPGLL
AELAEAWHG"
misc_feature 189532..>189861
/locus_tag="Rsph17029_0174"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
misc_feature 189583..>189681
/locus_tag="Rsph17029_0174"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
gene 189962..190987
/locus_tag="Rsph17029_0175"
/db_xref="GeneID:4895909"
CDS 189962..190987
/locus_tag="Rsph17029_0175"
/note="PFAM: aminoglycoside phosphotransferase;
KEGG: rsp:RSP_1523 hypothetical protein"
/codon_start=1
/transl_table=11
/product="aminoglycoside phosphotransferase"
/protein_id="YP_001042066.1"
/db_xref="GI:126460952"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:4895909"
/translation="MADPAPSDRAARAAAFLAQAGWGAAERRHLAGDASDRSYERLRR
GAETAVLMDAPPGKGDDPAAFVAIAAHLGGLGLSPPAVLAQDLANGFLLLEDLGDGLF
ARLLERAGADEADLYAAATDVLVHLQRAPAPAGLPDLSAADWARAAAMAPEWYARAAT
GAAPDAARVTALLEEALLRHADGPRVLILRDYHAENLLWLPDRAGLARVGLLDFQLAQ
MGQPGYDLVSLLQDARRDVPEPVERAMIARFAAATGAEPQAFGAAYAVLGAQRALRIL
GIFARLCLVAGKPGYVALIPRVWGQLWRNLGHPALAPLAAECRALLPEPAPAVLERIR
AQCGRMR"
misc_feature 190040..>190228
/locus_tag="Rsph17029_0175"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature <190502..190930
/locus_tag="Rsph17029_0175"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
gene 190969..191634
/locus_tag="Rsph17029_0176"
/db_xref="GeneID:4898010"
CDS 190969..191634
/locus_tag="Rsph17029_0176"
/note="PFAM: Nucleotidyl transferase;
KEGG: rsp:RSP_1524 nucleotidyltransferase family protein"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_001042067.1"
/db_xref="GI:126460953"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:4898010"
/translation="MRPDAVMIFAAGFGTRMGALTATRPKPMIEVAGRPLIDHALALA
EAAGISRIVANTHYLPESLTAHLAGRALVSHEEEILETGGGLRRALPLLGEGPVYTLN
SDAVWTGENPLDELAAGWREGMEALLLLAPSGSAPGDFTMDAAGRLARARGAPGYTYL
GAQILRTDRFAGVAEAKFSLNLIWDAMIAAGTAHGLVHRGGWCDVGRPEGIAAAEAML
ADV"
misc_feature 190984..>191628
/locus_tag="Rsph17029_0176"
/note="Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure...;
Region: GCD1; COG1208"
/db_xref="CDD:31401"
misc_feature 190987..191610
/locus_tag="Rsph17029_0176"
/note="NTP_transferase_like_1 is a member of the
nucleotidyl transferase family; Region:
NTP_transferase_like_1; cd06422"
/db_xref="CDD:133044"
misc_feature order(190993..191001,191131..191133,191272..191274,
191278..191280)
/locus_tag="Rsph17029_0176"
/note="Substrate binding site; other site"
/db_xref="CDD:133044"
misc_feature order(191278..191280,191578..191580,191584..191586)
/locus_tag="Rsph17029_0176"
/note="metal-binding site"
/db_xref="CDD:133044"
gene 191627..194620
/locus_tag="Rsph17029_0177"
/db_xref="GeneID:4898049"
CDS 191627..194620
/locus_tag="Rsph17029_0177"
/note="KEGG: rsp:RSP_1525 putative helicase/exonuclease"
/codon_start=1
/transl_table=11
/product="putative helicase/exonuclease"
/protein_id="YP_001042068.1"
/db_xref="GI:126460954"
/db_xref="GeneID:4898049"
/translation="MFDTPGPRLFGLPPGVDFPAALVRGLRARMAGAAPEAMARVELY
VNTQRMRRRITELMTAEGTGFLPRIRLVTELPPVPGLPAPVPPLRRRLELAQLVARLI
EAQPDIAPRSALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQRTQAFMAIV
APMFGADAPDAQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTTSLFMQAVARLP
QGALVLPGFDFDLPAAVWEGMDDALTAEDHPQFRFHRLMGLVGAGPAEVGRWTDEIPP
SPDRNRLISLSLRPAPVTDQWLTEGRHLTGLAEAARGMTLIEAPGPRAEALAVAMILR
KAAEEGRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLALSAPGRFLRHVARLFG
RRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPFPAAADLALWAGTRP
ADGVADWARWLGGLIEGLDAAGPRPLADHVAAHLALAEALATGPAGDTTGELWLKEAG
EAARAAVEELRREAPHGGELTPADYTDLFDAILARGEVREAVQARPDLMIWGTLEARV
QGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPE
VVLTRATRDAEAETVPSRWLNRLMNLMSGLKAGGGPEALAGMRARGRDWLDLAAALEQ
PATPVPLATRPAPQPPVPARPERLAVTGIRTLIRDPYAVYARHILRLYPLDPLHRAPD
ARLRGSILHRILEAFVKDRAPGGDRPAERARLMRIAEAVLAEEVPWPAARALWLARLD
RAADFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKPDRIDVLPDGRLHILDYKTG
TPPTKKQQEQFDKQLLLEAAMAERGGFRGLGPAEVARISYIGLGTSPKVESVETDAAL
LGQVWEGLHALIGRYMRREQGYVSRRAMFGERFPGDYDHLARFGEWEMSDAPVPAPVG
AEAPGAGSAEAGTDRDRGSCPEDAA"
misc_feature 191648..194506
/locus_tag="Rsph17029_0177"
/note="double-strand break repair protein AddB,
alphaproteobacterial type; Region: addB_alphas; TIGR02786"
/db_xref="CDD:163020"
misc_feature 193742..194509
/locus_tag="Rsph17029_0177"
/note="CRISPR/Cas system-associated protein Cas4; Region:
Cas4_I-A_I-B_I-C_I-D_II-B; cl00641"
/db_xref="CDD:207146"
gene 194649..197969
/locus_tag="Rsph17029_0178"
/db_xref="GeneID:4896369"
CDS 194649..197969
/locus_tag="Rsph17029_0178"
/note="TIGRFAM: UvrD-like DNA helicase, C terminal;
PFAM: UvrD/REP helicase;
KEGG: rsp:RSP_1527 helicase, UvrD/Rep family"
/codon_start=1
/transl_table=11
/product="UvrD-like DNA helicase, C terminal"
/protein_id="YP_001042069.1"
/db_xref="GI:126460955"
/db_xref="InterPro:IPR000169"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:4896369"
/translation="MSGQRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLL
LDGVEPQRILCLTYTKAAASEMQNRLFRRLGEWAMLDDAELRHALDTLGVAAVGHEVL
AQARRLFARAIETPGGLRIQTIHSFCATLLRRFPLEAGVSPQFTELDDRAARLLREEI
VEELADRIAPGVVADLARAYTGEDFGALAEEVARNAAGLLPPLDAPACRALYGVEGDE
AALLAQVFLGGEAEWMPALIAALEAGSANDQKAAAKLRLLSFASPTTATLAGLEGVLL
TGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLLAAERARLI
HAFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDE
AQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRA
EFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRHIAFRGDMP
GRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGVQIPQPG
GFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSALLAF
LATPEDDLSLAAVLRSPLFGWSEGELFDLAHGREGYLWRRLYDREAAHPATVAILRDL
RDQADFLRPFDLIERALTRHDRRRRLLARLGEEAEDGIDELLSQALAYERTDVPSLTG
FLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTADRKPRERDELFTL
EGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVAMTRAQCWLIAAAAGKLET
GGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAPQASAAAAAARPVLPAWALAPA
AEPPAAPEVLSPSALGGAKALPGDAMPTEEALAHGSAVHRLLEHLPLHPPEGWEAAAR
GLLPDLPDVAPVLAEARAVLSAEHLAEALVPHALLEVAVTAKVAGRRLSGTIDRLVVE
PDRVLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARL
MRLPRDIVRSAMVRATTT"
misc_feature 194676..197921
/locus_tag="Rsph17029_0178"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature 194718..194885
/locus_tag="Rsph17029_0178"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <196935..197189
/locus_tag="Rsph17029_0178"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
misc_feature <197607..197891
/locus_tag="Rsph17029_0178"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene 198028..198348
/locus_tag="Rsph17029_0179"
/db_xref="GeneID:4895805"
CDS 198028..198348
/locus_tag="Rsph17029_0179"
/note="TIGRFAM: thioredoxin;
PFAM: Thioredoxin domain;
KEGG: rsp:RSP_1529 thioredoxin"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001042070.1"
/db_xref="GI:126460956"
/db_xref="InterPro:IPR005746"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR013766"
/db_xref="GeneID:4895805"
/translation="MSTVPVTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEEL
SKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVVSNKVGAAPKAALATWI
ASAL"
misc_feature 198052..198336
/locus_tag="Rsph17029_0179"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(198118..198120,198127..198129)
/locus_tag="Rsph17029_0179"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene complement(198481..199389)
/locus_tag="Rsph17029_0180"
/db_xref="GeneID:4898018"
CDS complement(198481..199389)
/locus_tag="Rsph17029_0180"
/note="KEGG: rsp:RSP_1530 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042071.1"
/db_xref="GI:126460957"
/db_xref="GeneID:4898018"
/translation="MPHSRILNIYLPSPMREDAAAGKVNIVNRIEAAVAPHGLRIAVH
GDTPEERADPYRRQGWSLFHMQEPVGPRCLCLRQAYQNPFWQIEATNQRWWFDVAQAA
FDPDTVDPAAARPFFQRWRRHLVGERTCSRDGFLFMPLQGRISEHRSFQSMSPLAMIQ
ATLEHDLRPIRATLHPRETYSAADLHALEDLVRRHPRLSVVRSDPLALLAACDLVVTQ
NSSVALTGYFLRKPAVLFAGVDFHHIAGSVPREGVERAFQKAEGTLPDHERYLYWFFQ
LQTINGAAPEAEAQIMARFARHGWHF"
gene 199526..200083
/locus_tag="Rsph17029_0181"
/db_xref="GeneID:4898034"
CDS 199526..200083
/locus_tag="Rsph17029_0181"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease peptidase subunit"
/protein_id="YP_001042072.1"
/db_xref="GI:126460958"
/db_xref="InterPro:IPR001353"
/db_xref="InterPro:IPR002035"
/db_xref="GeneID:4898034"
/translation="MAEDRFPGWHGTTILAVRRGGEVVVAGDGQVSLGQTVIKGTARK
VRRLSPGGHEVVAGFAGSTADAFTLLERLEKKLEAAPGQLARACVQLAKDWRMDKYLR
NLEAMLIVTDGETLLVLTGAGDVLEPEHDVTAIGSGGNFALAAARGLMATDLPAEEIA
RKAMAIAADICVYTNGNLTVERISK"
misc_feature 199559..200074
/locus_tag="Rsph17029_0181"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature order(199559..199561,199607..199609,199613..199615,
199655..199657,199934..199936)
/locus_tag="Rsph17029_0181"
/note="active site"
/db_xref="CDD:48442"
misc_feature order(199628..199636,199811..199813,199892..199894,
199904..199906,199943..199948,199955..199957,
200009..200011,200021..200023,200030..200035,
200039..200041)
/locus_tag="Rsph17029_0181"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 200080..201381
/gene="hslU"
/locus_tag="Rsph17029_0182"
/db_xref="GeneID:4898016"
CDS 200080..201381
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit HslU"
/protein_id="YP_001042073.1"
/db_xref="GI:126460959"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004491"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:4898016"
/translation="MTDLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDL
RDEVYPKNILMIGPTGVGKTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRD
LVDAAIVETRARMREDVKARAAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNT
VIEIDVADTSNPMQMLDPTGQGQMGMMNLGEIFGKAFGGRTQRRKMTVAESHDILMNE
EADKLLDDEVVKATALEAVQQNGIVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIE
GTTVSTKYGPVKTDHILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRIL
SETDNALTLQYKALMQTEKVGITFTEDGIAALASIAAEVNRSVENIGARRLYTVMERV
FEELSFQAPDRSGEEVTVDAAYVEKNLGELARSSDLSRYVL"
misc_feature 200080..201378
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature 200131..>200388
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 200248..200271
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 200251..200274
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 200602..201036
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="AAA domain (Cdc48 subfamily); Region: AAA_2;
pfam07724"
/db_xref="CDD:203740"
misc_feature 200803..200820
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 201022..201024
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 201052..201327
/gene="hslU"
/locus_tag="Rsph17029_0182"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene complement(201432..202964)
/locus_tag="Rsph17029_0183"
/db_xref="GeneID:4895945"
CDS complement(201432..202964)
/locus_tag="Rsph17029_0183"
/note="PFAM: membrane bound O-acyl transferase, MBOAT
family protein;
KEGG: rsp:RSP_1533 putative alginate O-acetyltransferase"
/codon_start=1
/transl_table=11
/product="membrane bound O-acyl transferase, MBOAT family
protein"
/protein_id="YP_001042074.1"
/db_xref="GI:126460960"
/db_xref="InterPro:IPR004299"
/db_xref="GeneID:4895945"
/translation="MLFHSPEFLFAFLPLTLLGYYLLGRLPNKLWAVGWLAAASLFFY
GWWNVAFLPMLLISLGLNYLLGIMLVEKPRRWLLLAGVAANLAAIGFFKYAGFLVEIL
NALTAADVPVPHILLPLAISFYTFQQIAYLVDCHEGRIGRPNPIRYAMFITFFPQLIA
GPIVHYREIVPQIERDETFRVDQAKLVLGFTVFCFGLFKKIGMADTLAPLAQPLWDLA
AGGEAAYLAFAWRGAVAFALQLYFDFSGYSDMAIGLGLMFGILLPFNFDSPYKSQTII
EFWSRWHITLTRFLTAYLYNPITKTVMRRRMERGQPVWNPRKPQVLPFLVMLAFPTLV
TMGLAGVWHGAGWQFIVFGVLHGAMLVANHGWRATSAGRARIPAPLSWLLSPVKVLVT
FLAVTVSFVFFKSPTLTDALTVVRGLAGMGEHGGYLYLGDTVVVLFGLFIIWALPNTQ
EWVGLKPHTAPKAPARERARFAAFYWKPSPMHGLMVGAVLCITLLRIFGSPPAEFLYF
AF"
misc_feature complement(201711..202862)
/locus_tag="Rsph17029_0183"
/note="Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane]; Region:
DltB; COG1696"
/db_xref="CDD:31882"
gene complement(202964..203209)
/locus_tag="Rsph17029_0184"
/db_xref="GeneID:4898004"
CDS complement(202964..203209)
/locus_tag="Rsph17029_0184"
/note="KEGG: rsp:RSP_1534 putative acyl carrier protein"
/codon_start=1
/transl_table=11
/product="putative acyl carrier protein"
/protein_id="YP_001042075.1"
/db_xref="GI:126460961"
/db_xref="GeneID:4898004"
/translation="MTDPEIYDGLTSILRQVFDDPELVATPDLSAHDVAEWDSFNHIN
IVVASEMRFGVSFKSSELEDLKNVGDFVALIRDKKAA"
misc_feature complement(202970..203209)
/locus_tag="Rsph17029_0184"
/note="Acyl carrier protein [Lipid metabolism / Secondary
metabolites biosynthesis, transport, and catabolism];
Region: AcpP; COG0236"
/db_xref="CDD:30585"
gene complement(203270..205183)
/locus_tag="Rsph17029_0185"
/db_xref="GeneID:4898044"
CDS complement(203270..205183)
/locus_tag="Rsph17029_0185"
/note="TIGRFAM: HAD-superfamily phosphatase, subfamily
IIIC; FkbH like protein;
KEGG: rsp:RSP_1535 hypothetical protein"
/codon_start=1
/transl_table=11
/product="FkbH-like protein"
/protein_id="YP_001042076.1"
/db_xref="GI:126460962"
/db_xref="InterPro:IPR010033"
/db_xref="InterPro:IPR010037"
/db_xref="GeneID:4898044"
/translation="MKSKPLELHWLPVAADFEGDLVRARARAADDPPETWRALRHLAG
HRIDFLQTTRIERALRTAEAPPEVPRLRLALLGSFTVEHLVPGLTVGALRRGLALEVH
VPPYGQWRQAILDPASELAAFSPDAVLICSCETDLVPQLPLATPADEVEAALEASLSE
TVHRWRALRAMGAAVIQQLPVPTTDPVFGHLDRLIPASRRAMVAEMQHRLIRAAREER
VLILDPVAAAETEGLDALQDRLMWLHAKQHVSPAAGPWFGDQVARILAAMRGLTRKVL
VLDLDNTLWGGVIGDDGIEGIVIGEGSARGEAFKAFQLYCRALRERGILLAVSSKNDP
ERALAAFDHPEMVLRRSDFAAFVANWEDKGRGLQRIAQELNLGLEALVFFDDNPAERA
LLREQFPAVAVPEVPEEPEAYIRCLAAAGLFEAVGYTPDDALRAEQYAANAARRQLEV
VAPDMESFLAGLDMEMQVGPVQPVDLVRVTQLINKTNQFNLTTRRYTEAEVGAMIGDP
GMLTFCVRLKDRFGDNGIVSVVLGRLRPDGEGGQLFEVDTWLMSCRVLGRRVEEAVAA
VIARAARQAGASTVVGCYRPTPKNGMVADLFPRLGFAPAGADGLAALWRLDLAVPPPS
PPHIRLTERGVTH"
misc_feature complement(203354..204976)
/locus_tag="Rsph17029_0185"
/note="Predicted enzyme involved in methoxymalonyl-ACP
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: FkbH; COG3882"
/db_xref="CDD:33671"
misc_feature complement(204008..204364)
/locus_tag="Rsph17029_0185"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(205164..205904)
/locus_tag="Rsph17029_0186"
/db_xref="GeneID:4898065"
CDS complement(205164..205904)
/locus_tag="Rsph17029_0186"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: rsp:RSP_6005 putative short chain dehydrogenase"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001042077.1"
/db_xref="GI:126460963"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:4898065"
/translation="MTGGLLVTGGSGAIGGALCRIAARRRPVWVGYGTGAARARALVA
EIAEAGGRAEPVALPLQDPAALEAALAALPEPPASLALCAWPAPFVAPFGRQGEDLAL
QAAALAGCHALIATAWRLWWRRAGGGHVLAVLSAASEPPVARHMAAYVAQKAALRALL
AAAAAELGPAGLRVSVVAPGFVETPMLGAFDPRLLERARADAGGRFLPPERVAQALVA
ALDAPPPAGTVQDIHLAEEVESDEKQTA"
misc_feature complement(205275..>205541)
/locus_tag="Rsph17029_0186"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(order(205446..205448,205458..205460,
205500..205502))
/locus_tag="Rsph17029_0186"
/note="active site"
/db_xref="CDD:187535"
gene complement(205901..206305)
/locus_tag="Rsph17029_0187"
/db_xref="GeneID:4898025"
CDS complement(205901..206305)
/locus_tag="Rsph17029_0187"
/note="PFAM: MaoC domain protein dehydratase;
KEGG: rsp:RSP_1536 conserved hypothetical protein that may
be involved in lipid metabolism"
/codon_start=1
/transl_table=11
/product="dehydratase"
/protein_id="YP_001042078.1"
/db_xref="GI:126460964"
/db_xref="InterPro:IPR002539"
/db_xref="GeneID:4898025"
/translation="MTIAFDFTVTTDRMEAFRSISGDDNPIHFDTFFARERGFDGPIV
YGGLLIAEVSRLLGTALPGHGCVWQSLTMKFRRPLLVGERARLEAEVKHETPPLGIRL
IRLTISAGGRRIAEGEAMTLLPEPQSAREAAE"
misc_feature complement(205937..206305)
/locus_tag="Rsph17029_0187"
/note="(R)-hydratase [(R)-specific enoyl-CoA hydratase]
catalyzes the hydration of trans-2-enoyl CoA to
(R)-3-hydroxyacyl-CoA as part of the PHA
(polyhydroxyalkanoate) biosynthetic pathway.
(R)-hydratase contains a hot-dog fold similar to those of
thioesterase...; Region: R_hydratase; cd03449"
/db_xref="CDD:48044"
misc_feature complement(order(206081..206083,206087..206089,
206093..206101,206105..206110,206141..206146,
206153..206155,206234..206242,206246..206251,
206255..206257,206279..206281,206285..206287))
/locus_tag="Rsph17029_0187"
/note="dimer interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48044"
misc_feature complement(order(205943..205945,205961..205963,
205991..205993,205997..205999,206039..206041,
206081..206083,206087..206089,206093..206095,
206102..206104,206135..206137,206147..206149,
206156..206158,206165..206167,206171..206173,
206222..206224,206231..206233,206237..206239,
206255..206257))
/locus_tag="Rsph17029_0187"
/note="substrate-binding tunnel; other site"
/db_xref="CDD:48044"
misc_feature complement(order(206165..206170,206177..206179,
206222..206224,206231..206233,206237..206239,
206252..206254))
/locus_tag="Rsph17029_0187"
/note="active site"
/db_xref="CDD:48044"
misc_feature complement(order(206168..206170,206222..206224,
206231..206233,206237..206239))
/locus_tag="Rsph17029_0187"
/note="catalytic site [active]"
/db_xref="CDD:48044"
misc_feature complement(order(206102..206104,206108..206110,
206135..206137,206144..206146))
/locus_tag="Rsph17029_0187"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48044"
gene 206583..207497
/locus_tag="Rsph17029_0188"
/db_xref="GeneID:4898066"
CDS 206583..207497
/locus_tag="Rsph17029_0188"
/note="KEGG: rsp:RSP_1537 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042079.1"
/db_xref="GI:126460965"
/db_xref="GeneID:4898066"
/translation="MRSYILSAAAGMVLMAGALAAAFTAAAAIWPDRMPPPAISGSIA
TDEKLKYLRDRGREPVDVLAIGSSITWKHLDGAPFDGRVGNFVNGGTAYLQVHEIRTF
TRFYLDLYPRISQVVMLSALPDYGTCAGEGRIMDLEDAASYVRGGVPEAWFYMRYFAP
LRYVLQARRRSERLKPYDAFGYWLDRHGTTPSMLPTEVGYDLRYDEIALDPACLEALD
GLNRDLKARGVTFTLVMTPVAPRYSDLHPATTRATERIESFARSRGIRLIDFFGDPSF
EDADFWDAFHMQWPAARRLSREVADTLL"
misc_feature <207183..207440
/locus_tag="Rsph17029_0188"
/note="GDSL-like Lipase/Acylhydrolase family; Region:
Lipase_GDSL_2; pfam13472"
/db_xref="CDD:205650"
gene 207576..208349
/locus_tag="Rsph17029_0189"
/db_xref="GeneID:4898052"
CDS 207576..208349
/locus_tag="Rsph17029_0189"
/note="TIGRFAM: glucose-1-phosphate cytidylyltransferase;
PFAM: Nucleotidyl transferase;
KEGG: rsp:RSP_1538 probable glucose-1-phosphate
cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate cytidylyltransferase"
/protein_id="YP_001042080.1"
/db_xref="GI:126460966"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR013446"
/db_xref="GeneID:4898052"
/translation="MKAVLLAGGYGTRLSEETGIVPKPLVEIGGRPILWHIMKIYAAH
GITDFVICCGYKGHMIKDYFLSYFHRNSDITIDVRSNQIELHRPVSEPWRVTMVDTGL
ETMTGGRIKRIREHIGDETFCLTYGDGVSDIDIGSLVAFHKEQGVAGTVTAVRLPGRF
GALDLSEGTRVNRLREKSMMDGQTINGGFFVLEPSVFDYIDGDATVWEEEPLQGLVRD
GQLAVYRHEGFWQNMDTLRDKTLLQGLWEKGKAPWKIWD"
misc_feature 207576..>208343
/locus_tag="Rsph17029_0189"
/note="Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure...;
Region: GCD1; COG1208"
/db_xref="CDD:31401"
misc_feature 207582..208337
/locus_tag="Rsph17029_0189"
/note="G1P_cytidylyltransferase catalyzes the production
of CDP-D-Glucose; Region: G1P_cytidylyltransferase;
cd02524"
/db_xref="CDD:133015"
misc_feature order(207591..207602,207642..207647,207885..207887,
207900..207902,207951..207959,208131..208133,
208197..208199,208275..208277)
/locus_tag="Rsph17029_0189"
/note="substrate binding site; other site"
/db_xref="CDD:133015"
gene complement(208585..209592)
/locus_tag="Rsph17029_0190"
/db_xref="GeneID:4896593"
CDS complement(208585..209592)
/locus_tag="Rsph17029_0190"
/note="PFAM: glycosyl transferase, family 2;
KEGG: rsp:RSP_1539 glycosyl transferase, family 2"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001042081.1"
/db_xref="GI:126460967"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:4896593"
/translation="MRTAVIIPFYQREAGILSRALDSVDGQILPEGHSLTVFVIDDES
PVPARSEVEGRQGKVPVRLIAQKNGGPGAARNAGLDAVAAEGFDHVAFLDSDDIWQPT
HLADALDLLARGYDFHFCDHQRTDDDITYFERTPALRRMREERHAGVTVLDAEAPILA
FDQPSIMAASVDTYLSQTSTVVVRQSFVETLRFDPRLRNAGEDQLFWLSLIAAGARTV
VSWKMNVLCGRGVNVYFDAFDWKSTKVVDRTGYMLMFFHTVGRRLSLTASDRRTVADR
IRRYRRAYSYLFLRALLQGRVPTLSLTWKLAALDPGLVPAMPLRFLAVLPNREAESQQ
W"
misc_feature complement(208654..209592)
/locus_tag="Rsph17029_0190"
/note="Predicted glycosyltransferases [General function
prediction only]; Region: COG1216"
/db_xref="CDD:31409"
misc_feature complement(209155..209580)
/locus_tag="Rsph17029_0190"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cd00761"
/db_xref="CDD:132997"
misc_feature complement(order(209305..209307,209311..209313,
209473..209475,209563..209565,209569..209571))
/locus_tag="Rsph17029_0190"
/note="active site"
/db_xref="CDD:132997"
gene complement(209934..211028)
/locus_tag="Rsph17029_0191"
/db_xref="GeneID:4896574"
CDS complement(209934..211028)
/locus_tag="Rsph17029_0191"
/note="KEGG: rsp:RSP_1540 predicted secreted hydrolase"
/codon_start=1
/transl_table=11
/product="secreted hydrolase"
/protein_id="YP_001042082.1"
/db_xref="GI:126460968"
/db_xref="GeneID:4896574"
/translation="MNAERLSPFRFALRIAAAILLVTLGHTAPAGAQGFAGLGATAEG
FATPQRGRPLVFPRDHGPHPEYRIEWWYLTSVLTGEDGRDYGIQWTLFRSVLAPHEGA
GWESPQLWLGHAALTTPDRHFVAERYGRGGIGQAGVTAEPFEAWIDDWHMTGTASPGA
DALSALSLAASGSGFSYDLRLKAEGPLVAQGEQGYSVKSAAGQASWYYSQPFYRVEGR
IEVEGKSIAVTGKAWLDREWSSQPLAEDQTGWDWFSLMFDDGARLMGFRLRDGGEGYT
SASWISPGGRPEPMPPGALQVTPGREAEVAGRKIPVEWRVELPAKGLDVTVEAMNDRA
WMDTSVPYWEGPIAIRGSHAGRGYLEMTGY"
misc_feature complement(209937..210950)
/locus_tag="Rsph17029_0191"
/note="Hydroxyneurosporene synthase (CrtC); Region: CrtC;
cl12101"
/db_xref="CDD:159761"
gene complement(211018..213405)
/locus_tag="Rsph17029_0192"
/db_xref="GeneID:4897349"
CDS complement(211018..213405)
/locus_tag="Rsph17029_0192"
/note="PFAM: protein of unknown function DUF214;
KEGG: rsp:RSP_1541 putative ABC transporter, fused inner
membrane subunits"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042083.1"
/db_xref="GI:126460969"
/db_xref="InterPro:IPR003838"
/db_xref="GeneID:4897349"
/translation="MSTALAALLSHWRRSPLQLAMLLLGLALATALWSGVQAINAEAR
ASYAQAAATLGQDRLSRIAAEGPVLQETYVALRRAGWRVSPVVEGRLRIDERRSLRLI
GIDPLTLPAPAQQVEFGEGDALLPFLTAPGLIFADPETLARMQGAELPPLRAAEGLPP
GTGLMDIGQAQRLLGMEGRISHLLLDPAAPQPGPLPDGLRLIPPDSESDVARLTDSFH
LNLTAFGLLSFAVGLFIVHSAIGLAFEQRRPMFRTLRALGVTARTLIGLLFAELLLFA
LLAGAAGLLLGYLVAALLLPDVAATLRGLYGAEVPGTLAFRSGWAAAGLGIALLGTLV
SSAQSLWRVAHLPLLAPAQPRAWAVASERALWRQAMAAVGLLILAGALLLWGRGIVAA
FMLLAALLLGAALLLPVLLAALLRGAQGLARGPIAQWFWADTRQQLPGLSLALMALLL
ALAANIGVGTMVSSFRLTFTGWLDQRLAFELYLSAPDRDTADRVVRWLEPRAEAVLPI
VRAETEVLGQPAQLYGMADHPTYRENWPLLAEVPGVWDLLAGGDWALVNEQLARREGL
EPGDPIRLPGWEGRIAAVYSDYGNPSAQVILGLDRFFALHPEAERRRYGIRAAPDRAA
ALAEEMRAAFDLGDEGLIDQASLKGFSLQVFERTFAVTAALNVLTLGVAGLAMFASLM
VLSGMRLPQLAPVWAMGLTKARLARLEMLRTLLLAAGTMAAALPLGLALAWVLLAVVN
VQAFGWRLPMHVFPLDWLTLGALALVAAALAAAVPVRRLARLRPADLLRVFANER"
gene complement(213402..214082)
/locus_tag="Rsph17029_0193"
/db_xref="GeneID:4896846"
CDS complement(213402..214082)
/locus_tag="Rsph17029_0193"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: rsp:RSP_1542 ABC transporter, ATPase subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001042084.1"
/db_xref="GI:126460970"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4896846"
/translation="MRVKDPSDKLLSLEGVTKSYATGEGPVQVLAGVDLTLAAGESLA
LTGESGSGKSTLLHLAAGLDAADAGRIVVAGHDISQAGDADRARLRRGTVGLVFQQFN
LIPSLDVAANLAFQARLAGRHDPQWQAELAETLGLAACLHRYPEQLSGGQQQRVAIGR
TLAARPRLVLADEPTGNLDEATGDAVIALFLRLVSQTGAGLLMVTHSARLAGRLQGRV
QLSAGRVA"
misc_feature complement(213405..214055)
/locus_tag="Rsph17029_0193"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature complement(213408..214052)
/locus_tag="Rsph17029_0193"
/note="This family is comprised of MJ0796 ATP-binding
cassette, macrolide-specific ABC-type efflux carrier
(MacAB), and proteins involved in cell division (FtsE),
and release of liporoteins from the cytoplasmic membrane
(LolCDE). They are clustered together...; Region:
ABC_MJ0796_Lo1CDE_FtsE; cd03255"
/db_xref="CDD:73014"
misc_feature complement(213921..213944)
/locus_tag="Rsph17029_0193"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(order(213465..213467,213564..213569,
213786..213788,213918..213926,213930..213935))
/locus_tag="Rsph17029_0193"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73014"
misc_feature complement(213786..213797)
/locus_tag="Rsph17029_0193"
/note="Q-loop/lid; other site"
/db_xref="CDD:73014"
misc_feature complement(213612..213641)
/locus_tag="Rsph17029_0193"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73014"
misc_feature complement(213564..213581)
/locus_tag="Rsph17029_0193"
/note="Walker B; other site"
/db_xref="CDD:73014"
misc_feature complement(213546..213557)
/locus_tag="Rsph17029_0193"
/note="D-loop; other site"
/db_xref="CDD:73014"
misc_feature complement(213459..213479)
/locus_tag="Rsph17029_0193"
/note="H-loop/switch region; other site"
/db_xref="CDD:73014"
gene complement(214368..215426)
/locus_tag="Rsph17029_0194"
/db_xref="GeneID:4897589"
CDS complement(214368..215426)
/locus_tag="Rsph17029_0194"
/note="PFAM: Uncharacterised conserved protein UCP028101;
KEGG: rsp:RSP_1543 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042085.1"
/db_xref="GI:126460971"
/db_xref="InterPro:IPR008311"
/db_xref="GeneID:4897589"
/translation="MATRRHILAGLVASALPRLGWADAGSPAFLAAARMPSGDFALHG
LTEAGAMIFAIPLPARGHAAAAHPTRAEAVAFARRPGTYALVIGCASGTLHARLTPPD
GRQFNGHGAYSADGSLLYTSEVVAETSEGVVGVWDTSGWHRVDEFPSGGIGPHELRRM
PGSDRLVVANGGIQTDPQDRSKLNIGTMRPNLSYLSPDGALLEQAELPEELRQNSIRH
LALAEDGTVAFAMQWEGDPAEPVPLLGLHRRGEALRLCPPREEDLFAMRGYAGSIARS
EGMIALTSPRGGVVQLHAEDGAPLATLARPDACGVAPLPGGFLVTDGGGAITRLTPEG
FRPLERTASAWDNHLVRI"
misc_feature complement(214371..215201)
/locus_tag="Rsph17029_0194"
/note="Protein of unknown function (DUF1513); Region:
DUF1513; pfam07433"
/db_xref="CDD:148821"
gene complement(215428..216417)
/locus_tag="Rsph17029_0195"
/db_xref="GeneID:4895412"
CDS complement(215428..216417)
/locus_tag="Rsph17029_0195"
/note="KEGG: rsp:RSP_1544 hypothetical signal peptide
protein"
/codon_start=1
/transl_table=11
/product="putative signal peptide protein"
/protein_id="YP_001042086.1"
/db_xref="GI:126460972"
/db_xref="GeneID:4895412"
/translation="MHPALSAPLCGLLALLAAVPLRAGVPEAVSETILPGYEGFTAAT
AALDTAARADCSAEALKAPWNAAFDAWMAVSHLRIGPSETAGRALAIAFWPDPKGSGA
RTQARLLEAADPDLLAPERFAEVSVAARGLFALERLLYDPAFAGDYACALTRATAADL
ARMAADLETDWRETFAPLVLTAGRDGNDRFLTEAEARQALFTQLMAGLEFTADQRLGR
PLGSFDRPRPERAEARLSGRSLRNVELSLAALERLALVLAPDSPRSREGFDQARSRAA
RLDDPRFDGVADPSGRLRVEILQQRLHALRDVLSAEVGGALGVSVGFNAADGD"
misc_feature complement(215491..216321)
/locus_tag="Rsph17029_0195"
/note="Imelysin; Region: Peptidase_M75; pfam09375"
/db_xref="CDD:204217"
gene complement(216417..217925)
/locus_tag="Rsph17029_0196"
/db_xref="GeneID:4895650"
CDS complement(216417..217925)
/locus_tag="Rsph17029_0196"
/note="PFAM: protein of unknown function DUF1111;
KEGG: rsp:RSP_1545 probable thiol oxidoreductase with 2
cytochrome c heme-binding sites"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042087.1"
/db_xref="GI:126460973"
/db_xref="InterPro:IPR009056"
/db_xref="InterPro:IPR010538"
/db_xref="GeneID:4895650"
/translation="MSRLPVLLSLLAFPVAAEPLDPPNLTVVPRTAAEAARIAGVLAP
PTDFSAPEAFEAMPGGAASVRARDTADAFSLSSGNMPFEREMDFKLGNGLFRKLWVAS
PSSTQASDGLGPLYNARGCQNCHLKDGRGHVPEGPGDDAVSMFLRLSVPGGPTPEGIE
EWIATSAEPTYGGQLQDFAAPGLAPEGRMRIDWQEVPVTLGDGTVVTLRKPSYSVEDP
GYGPLAAGVMLSPRVTPQMIGLGLLEAIPAADILAHADPDDRDGDGISGRPSFVWSAE
ADAPMLGRFGLKAGAPTVLQQSAAAFSGDMGIANALFPEPWGECTEAQAACRAAPHGI
EPGKRDDLEIDRTGLALTAFYARNLAVPERRRVEDPQVLRGKQLFHEAGCPACHVPKF
VTHRLKDQPEQSFQLIWPYTDLLLHDMGEGLADGRPEGRATGREWRTAPLWGIGLTEQ
VSGHANFLHDGRARSILEAVLWHGGEAEAARARVMALPAPDRAALVAFVEDL"
misc_feature complement(216420..217841)
/locus_tag="Rsph17029_0196"
/note="Predicted thiol oxidoreductase [Energy production
and conversion]; Region: COG3488"
/db_xref="CDD:33291"
gene complement(218104..218589)
/locus_tag="Rsph17029_0197"
/db_xref="GeneID:4895424"
CDS complement(218104..218589)
/locus_tag="Rsph17029_0197"
/note="TIGRFAM: bacterioferritin;
PFAM: Ferritin, Dps family protein;
KEGG: rsp:RSP_1546 bacterioferritin"
/codon_start=1
/transl_table=11
/product="bacterioferritin"
/protein_id="YP_001042088.1"
/db_xref="GI:126460974"
/db_xref="InterPro:IPR002024"
/db_xref="InterPro:IPR008331"
/db_xref="InterPro:IPR009040"
/db_xref="GeneID:4895424"
/translation="MQGDAKVIEYLNAALRSELTAVSQYWLHYRLQEDWGFGSIAHKS
RKESIEEMHHADKLIQRIIFLGGHPNLQRLDPLRIGQTLRETLDADLAAEHDARTLYI
EARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGSIGEQNYGMLNAKPADEA
E"
misc_feature complement(218119..218589)
/locus_tag="Rsph17029_0197"
/note="Bacterioferritin (cytochrome b1) [Inorganic ion
transport and metabolism]; Region: Bfr; COG2193"
/db_xref="CDD:32376"
misc_feature complement(218143..218586)
/locus_tag="Rsph17029_0197"
/note="Bacterioferritin, ferritin-like diiron-binding
domain; Region: Bacterioferritin; cd00907"
/db_xref="CDD:153099"
misc_feature complement(order(218422..218424,218434..218436,
218455..218457,218500..218502,218521..218523,
218545..218547))
/locus_tag="Rsph17029_0197"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:153099"
misc_feature complement(order(218209..218214,218287..218289,
218299..218301,218308..218313,218428..218430,
218437..218439,218515..218517,218527..218532,
218536..218541))
/locus_tag="Rsph17029_0197"
/note="ferroxidase pore; other site"
/db_xref="CDD:153099"
misc_feature complement(order(218200..218202,218209..218211,
218287..218289,218308..218310,218428..218430,
218437..218439,218515..218517,218536..218538))
/locus_tag="Rsph17029_0197"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153099"
gene complement(218579..218833)
/locus_tag="Rsph17029_0198"
/db_xref="GeneID:4897570"
CDS complement(218579..218833)
/locus_tag="Rsph17029_0198"
/note="KEGG: rsp:RSP_1547 probable
bacterioferritin-associated ferredoxin"
/codon_start=1
/transl_table=11
/product="putative bacterioferritin-associated ferredoxin"
/protein_id="YP_001042089.1"
/db_xref="GI:126460975"
/db_xref="GeneID:4897570"
/translation="MIVCHCMGITDKDIRSAIDWMRASDPETIVTPGKIYRALGKRAD
CGGCMPHFLDTMRKCDSFEVPMNLRGLRRATTAGMNGNAG"
misc_feature complement(218681..218833)
/locus_tag="Rsph17029_0198"
/note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD;
pfam04324"
/db_xref="CDD:202971"
gene complement(218915..220240)
/locus_tag="Rsph17029_0199"
/db_xref="GeneID:4895306"
CDS complement(218915..220240)
/locus_tag="Rsph17029_0199"
/note="KEGG: rsp:RSP_1548 putative iron-regulated protein"
/codon_start=1
/transl_table=11
/product="putative iron-regulated protein"
/protein_id="YP_001042090.1"
/db_xref="GI:126460976"
/db_xref="GeneID:4895306"
/translation="MKSGRGTAWPPAPSRQRTAMKARLLALATVAPCALLPLPALAVE
RSEVVETYADIAEATYADSLATARELQTAVKALVDQPSEAALMAARSAWLAARVPYQQ
SEAFRFGNPIVDDWEGKVNAWPLDEGLIDYVDASYGGATEENDLAALNVIATPKFTLS
GTEIDATEITPELISGTLHEADGIEANVASGYHAIEFLLWGQDLNGTEAGAGDRPFTD
YAKGEDCTGGNCDRRAAYLVAATDLLVSDLDYMAAQWADGGAARVAVTEDPGKGLRAM
LTGMGSLSYGEQAGERMKLGLMLNDPEEEHDCFSDNTHNSHYYDGLGIRNVYRGHYAR
VDGSTVEGPSLSDLVAEADPELDKVLTGQLDATVDRLDALRTAVAGGMAYDQMLAPGN
AEGEALIMGAVDALVTQTASIERATTALGLTGVAFEGSDSLDNPNAVFQ"
misc_feature complement(218918..220099)
/locus_tag="Rsph17029_0199"
/note="Imelysin; Region: Peptidase_M75; cl09159"
/db_xref="CDD:208993"
gene complement(220237..220398)
/locus_tag="Rsph17029_0200"
/db_xref="GeneID:4897107"
CDS complement(220237..220398)
/locus_tag="Rsph17029_0200"
/note="KEGG: rsp:RSP_6006 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042091.1"
/db_xref="GI:126460977"
/db_xref="GeneID:4897107"
/translation="MNAMTDPMELIEAGIPVHDARSLTDGGTQARILLDGQIYCLRIT
RAGKLILTK"
misc_feature complement(220240..220353)
/locus_tag="Rsph17029_0200"
/note="Hemin uptake protein hemP; Region: hemP; pfam10636"
/db_xref="CDD:151153"
gene 220749..221432
/locus_tag="Rsph17029_0201"
/db_xref="GeneID:4898037"
CDS 220749..221432
/locus_tag="Rsph17029_0201"
/note="PFAM: protein of unknown function DUF533;
KEGG: rsp:RSP_1549 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042092.1"
/db_xref="GI:126460978"
/db_xref="InterPro:IPR007486"
/db_xref="GeneID:4898037"
/translation="MDETGFLRGGPAERPAGVCPPAGLAGTAGDGSGCSGLADLIAGF
LLGDRSRCCVAGAAARRGIVALSCVVAGRAWADWRDGQDEMAGASGGDRVPLGLDADG
AAAEGLCERLLQAMVAAAKCGGRVCREERRFIHRRLRELDLDCDAQALIAAELEAPQD
AGRIARLARTPEEAAGIYAASLLAAGHGSVAEGSYLADLAARLKLEAGLVAHLHRRAA
SAGSAALGD"
misc_feature 221082..221363
/locus_tag="Rsph17029_0201"
/note="tellurium resistance terB-like protein, subgroup 3;
Region: terB_like_YebE; cd07178"
/db_xref="CDD:143582"
misc_feature order(221115..221117,221136..221138,221310..221312,
221322..221324)
/locus_tag="Rsph17029_0201"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143582"
gene complement(221445..222275)
/locus_tag="Rsph17029_0202"
/db_xref="GeneID:4897172"
CDS complement(221445..222275)
/locus_tag="Rsph17029_0202"
/note="PFAM: regulatory proteins, IclR;
KEGG: rsp:RSP_1550 regulatory proteins, IclR family"
/codon_start=1
/transl_table=11
/product="regulatory proteins, IclR"
/protein_id="YP_001042093.1"
/db_xref="GI:126460979"
/db_xref="InterPro:IPR005471"
/db_xref="GeneID:4897172"
/translation="MVQSSPATTRRARGRPKAAEDKTEQNTVQSLDRALAMLRLLSQS
EGMTLSELAAESGEAAATVYRALVTLQAHQMIEMEEQGQVWHIGGGAFRVGSAFLRRA
KFVERARLPMDRLMRAAGETAALGVEADGRVMYLAQVETRQAIRAYFPEGSSAPLHAT
AVGKALLAWYPEERIETILDREGLAKFTSLTITSASTLMRDLARTRDRGYALEDQEGA
EGMRAVAAPVFNSFGEPVAAITLAGPAFRVSLSDSTRFGTLVREAADEVTEATGGVRG
"
misc_feature complement(221457..222191)
/locus_tag="Rsph17029_0202"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature complement(221472..221849)
/locus_tag="Rsph17029_0202"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene 222543..222923
/locus_tag="Rsph17029_0203"
/db_xref="GeneID:4895436"
CDS 222543..222923
/locus_tag="Rsph17029_0203"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: rsp:RSP_1551 putative glyoxalase family protein"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_001042094.1"
/db_xref="GI:126460980"
/db_xref="InterPro:IPR004360"
/db_xref="InterPro:IPR011588"
/db_xref="GeneID:4895436"
/translation="MIDQCSLHVTDLERSRCFYDAALGRLGIPTGRAARSGVHWVGDG
VEAFSINEIRSGRNARQVREAHLAFVARSRPAVDAFHAAALRAGGRNDREPGLRPEYH
PNYYAALVLDPDGHRIEAVCHTPD"
misc_feature 222546..222908
/locus_tag="Rsph17029_0203"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_19; cd07262"
/db_xref="CDD:176683"
misc_feature 222546..222899
/locus_tag="Rsph17029_0203"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
gene complement(223041..223532)
/locus_tag="Rsph17029_0204"
/db_xref="GeneID:4897210"
CDS complement(223041..223532)
/locus_tag="Rsph17029_0204"
/EC_number="3.5.3.19"
/note="catalyzes the formation of glyoxylate from
(S)-ureidoglycolate"
/codon_start=1
/transl_table=11
/product="ureidoglycolate hydrolase"
/protein_id="YP_001042095.1"
/db_xref="GI:126460981"
/db_xref="InterPro:IPR007247"
/db_xref="GeneID:4897210"
/translation="MPRPPIRPEPLTAAGFAPFGDLIAAEGPPDRLINQGLCGRWHDR
ARLDFGPGGRAGLSIFRAEPRRLPYRLEMVERHPEGSQAFLPMTDHPFLVLVAPDEAG
RPGTPRAFRTAPGQGINLHRGTWHGVLTPLAEPGLFAVLDRIGDSPNLEEHWFEEPWT
IED"
misc_feature complement(223050..223523)
/locus_tag="Rsph17029_0204"
/note="ureidoglycolate hydrolase; Provisional; Region:
PRK03606"
/db_xref="CDD:179606"
misc_feature complement(223044..223520)
/locus_tag="Rsph17029_0204"
/note="Ureidoglycolate hydrolase [Nucleotide transport and
metabolism]; Region: DAL3; COG3194"
/db_xref="CDD:33007"
gene complement(223649..224485)
/locus_tag="Rsph17029_0205"
/db_xref="GeneID:4898053"
CDS complement(223649..224485)
/locus_tag="Rsph17029_0205"
/note="PFAM: protein of unknown function DUF861, cupin_3;
Cupin 2, conserved barrel domain protein;
KEGG: rsp:RSP_1553 probable glyoxylate induced protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042096.1"
/db_xref="GI:126460982"
/db_xref="InterPro:IPR008579"
/db_xref="InterPro:IPR013096"
/db_xref="GeneID:4898053"
/translation="MTSYHAPMGGLPPQTRLMTGRAVFTEAYAFIPRGVFSDIVTSAL
PGWSQTKLWMIARPMTGFSETFSQYVMEVAPGGGSDAPEPEAGAQSVLFVTHGEVWLS
LDGQEHELGPGGYAYIPAGCRWRLHNGSHEPARFHWVRKLYEPAPGVSPPAAFVTNER
EIAPMAMPDTGGRWATTRFVDPADLAHDMHVNIVTFQPGGLIPFEETHVMEHGLFVLE
GKAVYKLNRDWVEVEAGDFMWLRAYCPQACYAAGPGPFRYLLYKDVNRHAKLRGPGAF
GR"
misc_feature complement(223673..224485)
/locus_tag="Rsph17029_0205"
/note="hypothetical protein; Provisional; Region:
PRK11171"
/db_xref="CDD:183011"
misc_feature complement(224069..224281)
/locus_tag="Rsph17029_0205"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
misc_feature complement(223709..223912)
/locus_tag="Rsph17029_0205"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
gene complement(224482..225897)
/locus_tag="Rsph17029_0206"
/db_xref="GeneID:4897476"
CDS complement(224482..225897)
/locus_tag="Rsph17029_0206"
/note="PFAM: polysaccharide deacetylase;
KEGG: rsp:RSP_1554 possible polysaccharide deacetylase"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_001042097.1"
/db_xref="GI:126460983"
/db_xref="InterPro:IPR002509"
/db_xref="GeneID:4897476"
/translation="MKRYPRDMRGHGPTPPDAAWPGGARIAVSIVLNYEEGGENCLLH
GDAQSEAFLSDIAGAQPWPGQRHWNMESIYDYGARAGFWRLHRLFTGLNIPVTVYGVA
TALARSPEQVAAMKSAGWEIASHGLKWVEHRDMPEEEERRQIAEAIRLHTEVVGERPR
GWYTGRCSVNTVRLTAEEGGFDWISDTYDDDLPYWLETGTRDQLVIPYTLEANDMRFA
TAPGYIEGEQFFTYLRDSFDTLYAEGCAGQAKMFSIGLHCRLIGRPGKIAGLKRFLDY
ARTHERVWFPRRGDIARHWHETHPHRRRPRPSRMDRESFEAHFGGIYEHSPWIAERAF
ELELGPAHDSPAGLANALARIFRSATPAERLSVLKAHPDLAGKLAQARRLTASSSFEQ
SSAGLDALTDAERAEFATLNADYVAKHGFPFIIAVRDHDKAGILAAFETRLAHDSATE
FATACRQVERIAELRLQDMLK"
misc_feature complement(225022..225888)
/locus_tag="Rsph17029_0206"
/note="putative urate catabolism protein; Region:
uraD_N-term-dom; TIGR03212"
/db_xref="CDD:211797"
misc_feature complement(225022..225840)
/locus_tag="Rsph17029_0206"
/note="Catalytic domain of bacterial PuuE allantoinases,
Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1),
and similar proteins; Region: CE4_PuuE_SpCDA1; cd10977"
/db_xref="CDD:200599"
misc_feature complement(order(225127..225129,225400..225408,
225511..225513,225523..225525,225742..225744,
225793..225795,225799..225801))
/locus_tag="Rsph17029_0206"
/note="active site"
/db_xref="CDD:200599"
misc_feature complement(order(225127..225129,225793..225795))
/locus_tag="Rsph17029_0206"
/note="catalytic site [active]"
/db_xref="CDD:200599"
misc_feature complement(order(225094..225096,225100..225108,
225169..225171,225178..225183,225190..225195,
225202..225207,225214..225216,225223..225237,
225247..225252,225265..225270,225316..225318,
225325..225339,225391..225399,225403..225405,
225496..225501,225574..225579,225637..225639,
225646..225651,225658..225666,225670..225687,
225691..225696,225700..225705,225727..225735,
225766..225771,225781..225783,225787..225789))
/locus_tag="Rsph17029_0206"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:200599"
misc_feature complement(224494..224961)
/locus_tag="Rsph17029_0206"
/note="OHCU decarboxylase; Region: OHCU_decarbox;
pfam09349"
/db_xref="CDD:204206"
gene 226044..226397
/locus_tag="Rsph17029_0207"
/db_xref="GeneID:4896356"
CDS 226044..226397
/locus_tag="Rsph17029_0207"
/note="PFAM: Transthyretin;
KEGG: rsp:RSP_1555 transthyretin-like protein"
/codon_start=1
/transl_table=11
/product="transthyretin"
/protein_id="YP_001042098.1"
/db_xref="GI:126460984"
/db_xref="InterPro:IPR000895"
/db_xref="GeneID:4896356"
/translation="MGRLTTHVLDTAQGRPAAGVRIVLCRLEGGNRSEIGTAVTNDDG
RTDRPLLEGAALVPGTYELTFGAGAYLRAGGLGAAAPLFLDEIPIRFCIADAAGHYHV
PLLLSPYGYSTYRGS"
misc_feature 226047..226394
/locus_tag="Rsph17029_0207"
/note="HIUase (5-hydroxyisourate hydrolase) catalyzes the
second step in a three-step ureide pathway in which
5-hydroxyisourate (HIU), a product of the uricase (urate
oxidase) reaction, is hydrolyzed to
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU);
Region: TLP_HIUase; cd05822"
/db_xref="CDD:100114"
misc_feature order(226062..226064,226068..226070,226176..226178,
226344..226346,226350..226352,226356..226358,
226383..226385)
/locus_tag="Rsph17029_0207"
/note="active site"
/db_xref="CDD:100114"
misc_feature order(226074..226085,226290..226295,226299..226301,
226311..226319,226362..226364,226368..226388)
/locus_tag="Rsph17029_0207"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:100114"
gene 226641..226796
/locus_tag="Rsph17029_0208"
/db_xref="GeneID:4896985"
CDS 226641..226796
/locus_tag="Rsph17029_0208"
/note="PFAM: antenna complex, alpha/beta subunit;
KEGG: rsp:RSP_1556 light-harvesting complex, beta subunit"
/codon_start=1
/transl_table=11
/product="antenna complex subunit alpha/beta"
/protein_id="YP_001042099.1"
/db_xref="GI:126460985"
/db_xref="InterPro:IPR000066"
/db_xref="InterPro:IPR002362"
/db_xref="GeneID:4896985"
/translation="MTDDPKKVWPSGLTIAEAEEVHKQLILGTRVFGGMALIAHFLAA
AATPWLG"
gene 226810..227583
/locus_tag="Rsph17029_0209"
/db_xref="GeneID:4896562"
CDS 226810..227583
/locus_tag="Rsph17029_0209"
/note="PFAM: antenna complex, alpha/beta subunit;
KEGG: rsp:RSP_6158 light-harvesting complex alpha subunit"
/codon_start=1
/transl_table=11
/product="antenna complex subunit alpha/beta"
/protein_id="YP_001042100.1"
/db_xref="GI:126460986"
/db_xref="InterPro:IPR000066"
/db_xref="InterPro:IPR002361"
/db_xref="GeneID:4896562"
/translation="MNNSKMWLTVNPNLGVPLLLGSVAVASLVVHGAVLTTTPWIANY
YQGSEPWPVAAAPAEEAAAPVEAAAPADEAAAPVEEAAPVAEAAAPAEEAAPAAEAAA
PVEEAAPAAEAAAPAEEAAPAAEAAAPVEEAAAPAEEAAPAAEAAAPAEEAAPVAEAA
APAEEAAPVAEPAAEPAPAAEAAAPVAEVSAPAAELAAPVAMSLVDIAAKLNGLGYSV
QSVTKTEGGYVVNMTDANGMPVAATLDPVTGLPFVPAAQ"
misc_feature <227413..227556
/locus_tag="Rsph17029_0209"
/note="Peptidase propeptide and YPEB domain; Region:
PepSY_2; pfam13670"
/db_xref="CDD:205847"
gene 228028..229242
/locus_tag="Rsph17029_0210"
/db_xref="GeneID:4896066"
CDS 228028..229242
/locus_tag="Rsph17029_0210"
/EC_number="1.1.1.41"
/note="Converts isocitrate to alpha ketoglutarate"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase"
/protein_id="YP_001042101.1"
/db_xref="GI:126460987"
/db_xref="InterPro:IPR001804"
/db_xref="InterPro:IPR004790"
/db_xref="GeneID:4896066"
/translation="MSKIKVANPVVELDGDEMTRIIWDFIKQKLILPYLDIDLHYYDL
GIEERDRTEDKITVDAAHAIKQHGVGVKCATITPDEARVEEFGLKSMWKSPNGTIRNI
LGGVIFRQPIICRNVPRLVPGWTKPIVVGRHAFGDQYRATDFRFPGKGKLTLKFVGED
GAVIEREVFDAPGSGVTMAMYNLDQSIIDFARASMNYGLNLGWPVYLSTKNTILKAYD
GRFKDLFQQVYEEEFAEKFKAAGITYEHRLIDDMVASALKWSGGYVWACKNYDGDVQS
DTVAQGFGSLGLMTSVLMTPDGQTVEAEAAHGTVTRHFRQHQAGKETSTNSIASIYAW
TGGLKHRAKLDGNADLARFAETLERVTVQTVEDGFMTKDLALLVGPDQKWLTTMGYLE
KVDEYLDRALGA"
misc_feature 228028..229233
/locus_tag="Rsph17029_0210"
/note="isocitrate dehydrogenase; Validated; Region:
PRK08299"
/db_xref="CDD:181365"
gene complement(229561..230535)
/locus_tag="Rsph17029_0211"
/db_xref="GeneID:4897558"
CDS complement(229561..230535)
/locus_tag="Rsph17029_0211"
/EC_number="1.1.1.169"
/note="ketopantoate reductase; catalyzes the NADPH
reduction of ketopantoate to pantoate; functions in
pantothenate (vitamin B5) biosynthesis"
/codon_start=1
/transl_table=11
/product="2-dehydropantoate 2-reductase"
/protein_id="YP_001042102.1"
/db_xref="GI:126460988"
/db_xref="InterPro:IPR003710"
/db_xref="InterPro:IPR013332"
/db_xref="InterPro:IPR013752"
/db_xref="GeneID:4897558"
/translation="MRICIFGAGAIGGYMGAKLAAAGADVSLVARGPHLAAMQARGLT
LIEEGGTRTVPVRAASDPAALGPQDYVIVTLKAHSVPAVVPQLSRLLGAEGTLVSGVN
GLPWWYFHRHGGPLEGRRLESVDPGGVQWDGLGPDRVLGCVVYPAAEVVEPGTVRHLE
GNRFSLGEPSGEKSDRALRLSEALTAAGLKAPVRPRLRDEIWVKLWGNLSFNPISALT
GATLDRLCTDPGTRAVARSMMLEAQAIAERLGVKFPIDVERRIDGGAAVGAHRTSMLQ
DLEAGRPMEIEALVGSVAELGRIVNLPTPTIDTVLALVRLRAKVADLT"
misc_feature complement(229567..230535)
/locus_tag="Rsph17029_0211"
/note="2-dehydropantoate 2-reductase; Reviewed; Region:
PRK06522"
/db_xref="CDD:180603"
misc_feature complement(230023..230529)
/locus_tag="Rsph17029_0211"
/note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
pfam02558"
/db_xref="CDD:202282"
misc_feature complement(229582..229947)
/locus_tag="Rsph17029_0211"
/note="Ketopantoate reductase PanE/ApbA C terminal;
Region: ApbA_C; pfam08546"
/db_xref="CDD:203977"
gene complement(230532..232067)
/locus_tag="Rsph17029_0212"
/db_xref="GeneID:4895293"
CDS complement(230532..232067)
/locus_tag="Rsph17029_0212"
/note="PFAM: AMP-dependent synthetase and ligase;
KEGG: rsp:RSP_1561 AMP-forming acyl-CoA synthetase/ligase"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_001042103.1"
/db_xref="GI:126460989"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4895293"
/translation="MTATLSDLFAFHRNDGLAVGAPDRPWLTYAGLRELVGHTVTALH
AAGVGKGDRVAIVLPNGPEMATAFVALAEGAVTAPLNPAYRLEEFEFYLSDLGAKAIV
LAEGYDGPALAAATHLGLAVLRLGHDAADPAGSFTLRAESVAPGEPDRATARPRDLAL
ILHTSGTTSRPKIVPLRHGNLSASAHHIAGSLALTPHDRCLNMMPLFHIHGLVAAVSA
SLAAGASVWCAPGFDALKVFGWIEAARPTWYTAVPTMHQAILARAPRNAEVIERVPLR
FIRSSSASLPAQVMEALSATFRAPVIEAYGMTEAAHQMTSNPLPPRAQKPGSVGVAAG
PQVRIADEASDRLIEGTGEVVISGPNVTAGYESNEAANAKSFFEAEGERWFRTGDQGR
FDSEGYLTITGRLKEIINRGGEKISPLEVDGVLMDHPAVLQVVTFALPHPKLGEEVAA
AVVLREGMAADEAAIRAFCADRLAEFKVPRRVVLLDEIPKGATGKLQRIGLAEKLGLV
SPA"
misc_feature complement(230553..232058)
/locus_tag="Rsph17029_0212"
/note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism]; Region: CaiC; COG0318"
/db_xref="CDD:30666"
misc_feature complement(230763..231986)
/locus_tag="Rsph17029_0212"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(230577..>230903)
/locus_tag="Rsph17029_0212"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
gene complement(232200..232886)
/locus_tag="Rsph17029_0213"
/db_xref="GeneID:4895482"
CDS complement(232200..232886)
/locus_tag="Rsph17029_0213"
/note="PFAM: fumarylacetoacetate (FAA) hydrolase;
KEGG: rsp:RSP_1562 fumarylacetoacetate hydrolase family
protein"
/codon_start=1
/transl_table=11
/product="fumarylacetoacetate (FAA) hydrolase"
/protein_id="YP_001042104.1"
/db_xref="GI:126460990"
/db_xref="InterPro:IPR002529"
/db_xref="GeneID:4895482"
/translation="MSDHVFAPPAAPSLPVAESQTLFPVRRVYCIGRNYAAHAVEMGG
DPDREPPFFFQKNPDNLDPSGRFPYPPESSDVHHEVELAVMLGSGGTDIPVEEAMAHV
WGYALALDMTRRDLQGEAKKAGRPWEVGKAFERSAPVGPVHPAARIGHPEAGRIELRV
NGALRQEGDLNQMIWKVPEMISVLSRHFALAAGDVILTGTPSGVGAVQRGDVMEASID
GLGTLRVEVV"
misc_feature complement(232203..232886)
/locus_tag="Rsph17029_0213"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature complement(232203..232808)
/locus_tag="Rsph17029_0213"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene complement(232953..233936)
/locus_tag="Rsph17029_0214"
/db_xref="GeneID:4895538"
CDS complement(232953..233936)
/locus_tag="Rsph17029_0214"
/note="PFAM: luciferase family protein;
KEGG: rsp:RSP_1563 putative oxidoreductase"
/codon_start=1
/transl_table=11
/product="luciferase family protein"
/protein_id="YP_001042105.1"
/db_xref="GI:126460991"
/db_xref="InterPro:IPR011251"
/db_xref="GeneID:4895538"
/translation="MIPYSVLDLAPVPEGATTSEALAQTVTLARHAEALGFHRYWLAE
HHAMPGIASAATAVLIGHVAAHTQRIRVGSGGIMLPNHAPLMVAEAFGTLAELHPGRI
DLGLGRAPGTDGRTAQALRRNLDVTDSFPADVLELLRYFGEPEPGAIQAIPGQGTRVP
LWILGSSLYGAQLAAHFGLPYAFASHFAPPALEAALAAYRQGFRPSTQLDRPRAMVAI
NVFAGADDAEGRYLRSSAQLAFANLRLGRPGKLPRPVEDISAHVDPGMLRTVDQALSV
SATGGPETVRRELAALLERHRPDEVILTGQIHDPAARLRSFTIAAEALASL"
misc_feature complement(232968..233927)
/locus_tag="Rsph17029_0214"
/note="luciferase family oxidoreductase, group 1; Region:
oxido_grp_1; TIGR03558"
/db_xref="CDD:211837"
misc_feature complement(<233613..233900)
/locus_tag="Rsph17029_0214"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cl07892"
/db_xref="CDD:213112"
gene complement(234013..235233)
/locus_tag="Rsph17029_0215"
/db_xref="GeneID:4895797"
CDS complement(234013..235233)
/locus_tag="Rsph17029_0215"
/note="PFAM: protein of unknown function UPF0118;
KEGG: rsp:RSP_1564 putative transmembrane transport
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042106.1"
/db_xref="GI:126460992"
/db_xref="InterPro:IPR002549"
/db_xref="GeneID:4895797"
/translation="MGGTAVTAMNETRTDRLGEHRLPPKRVRRPLITDISAARWLLLL
ILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRGIAGALLVMMIVGFLVI
PVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWVGEKWRTYIGEPGAI
SEMVQLVSGANIGTISRGILTAGTLAFHLALTLLFMLIALFIFYRDGERIAAQVDRVG
TRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPSPVTLGVITGF
MALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPVLVGGPVKLP
FLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREIDIAETEEMGHPLEPLPD
PLPAPLHPFRSESR"
misc_feature complement(234121..235083)
/locus_tag="Rsph17029_0215"
/note="Domain of unknown function DUF20; Region: UPF0118;
pfam01594"
/db_xref="CDD:201878"
misc_feature complement(234088..235047)
/locus_tag="Rsph17029_0215"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
gene complement(235325..236677)
/locus_tag="Rsph17029_0216"
/db_xref="GeneID:4895976"
CDS complement(235325..236677)
/locus_tag="Rsph17029_0216"
/note="PFAM: BLUF domain protein;
KEGG: rsp:RSP_1565 AppA, antirepressor of PpsR, sensor of
blue light"
/codon_start=1
/transl_table=11
/product="BLUF domain-containing protein"
/protein_id="YP_001042107.1"
/db_xref="GI:126460993"
/db_xref="InterPro:IPR007024"
/db_xref="GeneID:4895976"
/translation="MQHDLEADVTMTGSDLVSCCYRSLAAPDLTLRDLLDIVETSQAH
NARAQLTGALFYSQGVFFQWLEGHPAAVSEVMSHIQRDRRHSNVEILAEEPIAKRRFA
GWHMQLSCSEADMRSLGLAESRQIVTVGRSLVADNTNIFSFDRIAAVRRFLSDVCAAR
TLAPDTPVEADTFALYALTEAQAGRSGRAKAVARLSDLLSTDPLGRLTEVEELLRAHA
PTAADFARLFEACAERLTRALAEDRISRMQVTLAYSALQMALRRIHHLPDPQKSVGAV
LVAGVPGHKPILEAALAAEMLRAVGWSTSVVHPESVAALAARLKTSRTSTLVMAPSLL
EGTEQEADTLRFVSALRARTDLPGLSILIGGRLAQLPPSKLKDSGADAGFAHLALLPA
ALARVACPANADCCSMRACRMPASQCCDKRINPEFLLANVMPSVLTRISSRQDRRRSA
"
misc_feature complement(236360..236632)
/locus_tag="Rsph17029_0216"
/note="Sensors of blue-light using FAD; Region: BLUF;
smart01034"
/db_xref="CDD:198102"
gene 237150..237839
/locus_tag="Rsph17029_0217"
/db_xref="GeneID:4896450"
CDS 237150..237839
/locus_tag="Rsph17029_0217"
/note="PFAM: cobalamin (vitamin B12) biosynthesis CbiX
protein;
KEGG: rsp:RSP_1566 hypothetical protein"
/codon_start=1
/transl_table=11
/product="cobalamin (vitamin B12) biosynthesis CbiX
protein"
/protein_id="YP_001042108.1"
/db_xref="GI:126460994"
/db_xref="InterPro:IPR002762"
/db_xref="GeneID:4896450"
/translation="MDETALIVAHGQPSDPLPAAAEIEALAAAVGAHLPGWRLRAATL
AEPGALAREVAAAGRPGIVYPLFMAGGWFTRTNLPRQLSAAGGTGWRIAEPFGTDPAV
SDLTVEIACEALSHRPAPAILLAAHGSFRSPAPSEVARAMAARLSEETGLPCEAAFID
QEPQIAARARLMPEALCLPFFAARGGHVVEDLPAALAEAAFRGMVLEPVGLDLRVPAL
IARAISALDRA"
misc_feature 237510..237758
/locus_tag="Rsph17029_0217"
/note="Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal domain.
SirB catalyzes the ferro-chelation of sirohydrochlorin to
siroheme, the prosthetic group of sulfite and nitrite
reductases. CbiX is a cobaltochelatase; Region:
CbiX_SirB_N; cd03416"
/db_xref="CDD:48643"
misc_feature order(237528..237530,237708..237710)
/locus_tag="Rsph17029_0217"
/note="putative active site [active]"
/db_xref="CDD:48643"
gene complement(237873..240440)
/locus_tag="Rsph17029_0218"
/db_xref="GeneID:4896592"
CDS complement(237873..240440)
/locus_tag="Rsph17029_0218"
/note="KEGG: rsp:RSP_1567 probable sensory transduction
histidine kinase;
TIGRFAM: PAS sensor protein;
PFAM: response regulator receiver; ATP-binding region,
ATPase domain protein domain protein; histidine kinase A
domain protein domain protein; Hpt domain protein; PAS
fold-3 domain protein; PAS fold-4 domain protein; PAS fold
domain protein;
SMART: PAS domain containing protein"
/codon_start=1
/transl_table=11
/product="multi-sensor hybrid histidine kinase"
/protein_id="YP_001042109.1"
/db_xref="GI:126460995"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
/db_xref="GeneID:4896592"
/translation="MSARRDTDLRRTVAAPRLWQRLRLPAAVLVMLAGATAIIGLAND
ARERFQQLDYIVTDGVQTRLSDLDGNLSQFASALGVTGSSPSPAAVRTSLRQLQEGLA
QLDTAMAEAGVLWDPAYGEGIARLRQFERDRADLIAAPDATVTAAMPGLTRALPQLEQ
AVAELSATASADRESRNLENRAIIGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSRE
QAEAAGRASARLEAIFRISADAILVTDWSARVIDCNRAALAIFGHQRERLAGADAMEL
LFPAELQGRQRMRVVDALRNSDPRIDGPLRLELEAVHADGSRFPVEVSLAAARVEGED
IIVALMRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELL
AQTPLDPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVAEMVDFDLDRLIEDCI
ANQSGFAAVVGNRIDHRPLTGPVGILNGEPQRLRQVLLNLLNNAVKFTRNGRIIVESE
VQGADVEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMG
GDLTVQSTPGRGSRFTLRLPLRRPREELAACRGPDEALSVLLVEDNDINRFIAQNFLE
SAGHRVLTARSGLEGLTAAQSRHFDVILTDISMPGLDGLQVARRIRDGGGPSAASRIL
AITAHSLTADPGALRAAGIDGWLEKPVSRDALLRMLRHPAEPAPPPPEEALDTARLRE
LEDQIGPVALQGLIRQMILDGTAILERLAALGPEPPPEEARPLVHQLAGAISTFGTGP
LHRRLRQAQEALRTGAEAGPHLAALPALWDRMRTALEEAAPDRPLDTAAPVRSSGAL"
misc_feature complement(238695..239768)
/locus_tag="Rsph17029_0218"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(239412..239732)
/locus_tag="Rsph17029_0218"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(239493..239495,239508..239510,
239604..239615,239652..239654,239670..239672,
239682..239684))
/locus_tag="Rsph17029_0218"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(239466..239468,239472..239474,
239559..239564,239571..239573,239610..239612,
239622..239624))
/locus_tag="Rsph17029_0218"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(239160..239351)
/locus_tag="Rsph17029_0218"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(239175..239177,239187..239189,
239196..239198,239208..239210,239217..239219,
239229..239231,239277..239279,239286..239288,
239298..239300,239307..239309,239319..239321,
239331..239333))
/locus_tag="Rsph17029_0218"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(239313..239315)
/locus_tag="Rsph17029_0218"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(238695..238994)
/locus_tag="Rsph17029_0218"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(238698..238700,238704..238709,
238722..238724,238728..238730,238776..238787,
238866..238871,238875..238877,238881..238883,
238887..238889,238953..238955,238962..238964,
238974..238976))
/locus_tag="Rsph17029_0218"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(238962..238964)
/locus_tag="Rsph17029_0218"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(238779..238781,238785..238787,
238869..238871,238875..238877))
/locus_tag="Rsph17029_0218"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(238284..238625)
/locus_tag="Rsph17029_0218"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(238281..238622)
/locus_tag="Rsph17029_0218"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(238317..238322,238329..238331,
238386..238388,238455..238457,238479..238481,
238608..238613))
/locus_tag="Rsph17029_0218"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(238479..238481)
/locus_tag="Rsph17029_0218"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(238455..238463,238467..238472))
/locus_tag="Rsph17029_0218"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(238314..238322)
/locus_tag="Rsph17029_0218"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(240508..241902)
/locus_tag="Rsph17029_0219"
/db_xref="GeneID:4896627"
CDS complement(240508..241902)
/locus_tag="Rsph17029_0219"
/note="PFAM: glutamine synthetase, catalytic region;
KEGG: rsp:RSP_1568 glutamine synthetase"
/codon_start=1
/transl_table=11
/product="glutamine synthetase"
/protein_id="YP_001042110.1"
/db_xref="GI:126460996"
/db_xref="InterPro:IPR008146"
/db_xref="GeneID:4896627"
/translation="MTDQPSPSGSTLSEAETFLAAHPEIEAFDIVLHDANGIGRGKII
RRHELLSFYKGGRHLPISILGLDICGEDVHETGLIWDQGDGDLRAWPIPGTLVPLHGT
TPPRGEVFMCMYDLDGRPMSSDPRHALARQVEALAELGLHPSAAFELEFFLLANERGP
DGRVQPAADVLDGRRSAKTEVYSVDHLHGMMPLFSDIYAGAEAAGIKAETMISEYAPG
QYELTLHYRTDVLQAADDLMRLKRIVRAQARRHGVTACFMAKPVESYAGSGMHLHVSL
CDAEGRNIFVEETEGQWSRPILHALGGLRETMGESMLVFAPHANSWRRFASQSYAPVS
PSWGVNNRSVALRIPAGDIRARRIEHRPAGVDANPYLVAATVLAGIRRGLEQQIDPGP
ETTGNGYEDPGDTQPIPTCWRSAIAAAQHSAFLREALGPDMHRTFTAIKAAEYARVAR
TIPDVDYDLYLHTV"
misc_feature complement(240514..241863)
/locus_tag="Rsph17029_0219"
/note="Glutamine synthetase [Amino acid transport and
metabolism]; Region: GlnA; COG0174"
/db_xref="CDD:30523"
misc_feature complement(240769..241536)
/locus_tag="Rsph17029_0219"
/note="Glutamine synthetase, catalytic domain; Region:
Gln-synt_C; pfam00120"
/db_xref="CDD:201016"
gene complement(241911..243284)
/locus_tag="Rsph17029_0220"
/db_xref="GeneID:4896944"
CDS complement(241911..243284)
/locus_tag="Rsph17029_0220"
/note="PFAM: aminotransferase class-III;
KEGG: rsp:RSP_1569 glutamate-1-semialdehyde
2,1-aminomutase"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_001042111.1"
/db_xref="GI:126460997"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:4896944"
/translation="MSADPPRTAGVAEDRLAAFLADETARFERENPRSKEALQRGAQS
YLGGVPMHWMKDWPSPFPLVAAEAQGARLTDLDGHRLDDFCLGDTGSMFGHSPAPVAR
AIRRQARQGLTYMLPTEATFEAGRLLSRTFGDFRWQVALTATDANRFALRVARAVTGR
RKVLVFNGCYHGTVDDTMVMLENGRTRARPGLVGMVADLASKAVAVEFNDVAGVEAAL
ATGEIAAILTEPVMTNSCMVLPEAGFHDALRTLSRRYGAVLILDETHTLSSGLGGYGR
VHSLSPDILVVGKCVAGGMPTAVWGLTPDLGARFEAYNATRPAGHSGMGTTLSANPMQ
FACLCATLSEVMTPEAYAHMERGAKRLAKGLAAVIARVGAPWHVVRVGARVEFICAPG
PLRNGTEAAGAHRPRLEGAVHLGLLNRGSLIAPFHNMMLVSPMTRTRQIDRLIAAFDA
ILTDLFA"
misc_feature complement(241914..243272)
/locus_tag="Rsph17029_0220"
/note="aminotransferase; Validated; Region: PRK07046"
/db_xref="CDD:180807"
misc_feature complement(241929..243131)
/locus_tag="Rsph17029_0220"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(242418..242423,242490..242492,
242499..242501,242598..242600,242844..242846,
242853..242858))
/locus_tag="Rsph17029_0220"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(242418..242420)
/locus_tag="Rsph17029_0220"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(243281..244363)
/locus_tag="Rsph17029_0221"
/db_xref="GeneID:4897094"
CDS complement(243281..244363)
/locus_tag="Rsph17029_0221"
/EC_number="4.1.1.21"
/note="With PurE catalyzes the conversion of
aminoimidazole ribonucleotide to carboxyaminoimidazole
ribonucleotide in the de novo purine nucleotide
biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase ATPase
subunit"
/protein_id="YP_001042112.1"
/db_xref="GI:126460998"
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR005875"
/db_xref="InterPro:IPR011761"
/db_xref="GeneID:4897094"
/translation="MTDRLPPGSTIGILGGGQLGRMLSVAAARLGFRTHIFEPSANPP
AADVAHAVTTAPYEDEAALRAFAASVDVITYEFENIPTSALDLLEALKPLHPNRRALA
VSQDRLEEKGFLTGLGLAVAPYRPVGSREDLEAAIHGIGTPAILKTTRLGYDGKGQAR
LMEPDDAAEAFAAMNGQPAVLEGFVRFTHEVSVIAARGRDGSVAVYEPGENVHLSGIL
HTTTVPARLTASQRTDAVLLAGRILNALDYVGVMGVELFVTPEALLVNEIAPRVHNSG
HWTQNGCAVDQFEQHIRAITGWPLGDGSRFADVEMENLIGHDVARVPALALEKHTAIH
LYGKSEARPGRKMGHVNRILRPVTGA"
misc_feature complement(243290..244345)
/locus_tag="Rsph17029_0221"
/note="phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed; Region: PRK06019"
/db_xref="CDD:180352"
misc_feature complement(243515..244024)
/locus_tag="Rsph17029_0221"
/note="ATP-grasp domain; Region: ATP-grasp; pfam02222"
/db_xref="CDD:202164"
gene complement(244356..244841)
/locus_tag="Rsph17029_0222"
/db_xref="GeneID:4897497"
CDS complement(244356..244841)
/locus_tag="Rsph17029_0222"
/EC_number="4.1.1.21"
/note="KEGG: rsp:RSP_1571 phosphoribosylaminoimidazole
carboxylase, catalytic subunit;
TIGRFAM: phosphoribosylaminoimidazole carboxylase,
catalytic subunit;
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
(AIR) carboxylase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="YP_001042113.1"
/db_xref="GI:126460999"
/db_xref="InterPro:IPR000031"
/db_xref="GeneID:4897497"
/translation="MTVDVGIIMGSQSDWATMKEAAAILDELGISHEARIVSAHRTPD
RLWSYGKTAVERGLKVIIAGAGGAAHLPGMMASKTRVPVIGVPVQTRALSGVDSLYSI
VQMPKGFPVATMAIGSAGAANAGLMAAGILALSDPALGQRLDAWRAALSASIPEEPTD
D"
misc_feature complement(244380..244832)
/locus_tag="Rsph17029_0222"
/note="AIR carboxylase; Region: AIRC; pfam00731"
/db_xref="CDD:144362"
gene complement(245077..245295)
/locus_tag="Rsph17029_0223"
/db_xref="GeneID:4897642"
CDS complement(245077..245295)
/locus_tag="Rsph17029_0223"
/note="PFAM: protein of unknown function DUF465;
KEGG: rsp:RSP_6218 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042114.1"
/db_xref="GI:126461000"
/db_xref="InterPro:IPR007420"
/db_xref="GeneID:4897642"
/translation="MNASPELSFEDMLRIRLEVLRREHRDLDEAIAAIEAGGRGDQLM
LRRLKKQKLALKDQIVKIEDQLIPDIIA"
gene 245623..246090
/locus_tag="Rsph17029_0224"
/db_xref="GeneID:4897924"
CDS 245623..246090
/locus_tag="Rsph17029_0224"
/note="PFAM: heat shock protein Hsp20;
KEGG: rsp:RSP_1572 heat shock protein, HSP20 family"
/codon_start=1
/transl_table=11
/product="heat shock protein Hsp20"
/protein_id="YP_001042115.1"
/db_xref="GI:126461001"
/db_xref="InterPro:IPR002068"
/db_xref="GeneID:4897924"
/translation="MSLLQGHDGMTKLTFGGHPFLLGFEQLERLVERTAKTASEGYPP
FNIEAVAENAYRITLAVAGFREDDIAITVEDRQLVVRGRQAEDPAERVFLHRGIASRA
FQRSFVLADGVEVAGATMEHGLLHIDLHRQVPQAVVQTIPIGRNRAIKEGVEQ"
misc_feature 245683..246051
/locus_tag="Rsph17029_0224"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature 245749..246015
/locus_tag="Rsph17029_0224"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature order(245755..245769,245794..245796,245800..245802,
245806..245811,245935..245937,245989..245994)
/locus_tag="Rsph17029_0224"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene 246087..246311
/locus_tag="Rsph17029_0225"
/db_xref="GeneID:4897997"
CDS 246087..246311
/locus_tag="Rsph17029_0225"
/note="PFAM: protein of unknown function DUF1150;
KEGG: rsp:RSP_1573 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042116.1"
/db_xref="GI:126461002"
/db_xref="InterPro:IPR009531"
/db_xref="GeneID:4897997"
/translation="MNTPFDFPEGAGRLVYVRPVPVAELPEDVQSMARGLDHIYALHG
ADGERLALVRDRHLAFVLARQNDLAPVNVH"
misc_feature 246093..246308
/locus_tag="Rsph17029_0225"
/note="Protein of unknown function (DUF1150); Region:
DUF1150; pfam06620"
/db_xref="CDD:148304"
gene 246585..247061
/locus_tag="Rsph17029_0226"
/db_xref="GeneID:4898000"
CDS 246585..247061
/locus_tag="Rsph17029_0226"
/note="PFAM: cytochrome B561;
KEGG: rsp:RSP_1574 cytochrome b562"
/codon_start=1
/transl_table=11
/product="cytochrome B561"
/protein_id="YP_001042117.1"
/db_xref="GI:126461003"
/db_xref="InterPro:IPR011577"
/db_xref="GeneID:4898000"
/translation="MTQEPGYTRLQITLHWAIAGLVLFNYIFGETMERAYDAVRQNVE
PAGVGHYLHVVVGLAVLVLTLVRIGARFVVGVPEKGTTPGDKVAAGLQGLLYLLTLLV
PALGMTAWGGGQAWAAGPHVLAANAIMLLALVHAISALFHQYVLKDRLLLRMMRPR"
misc_feature <246945..247058
/locus_tag="Rsph17029_0226"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:207221"
gene complement(247151..248857)
/locus_tag="Rsph17029_0227"
/db_xref="GeneID:4898030"
CDS complement(247151..248857)
/locus_tag="Rsph17029_0227"
/EC_number="2.7.1.25"
/EC_number="2.7.7.4"
/note="in Rhizobium meliloti this protein is involved in
the synthesis of nodulation factors that are active on the
roots of alfalfa; catalyzes formation of activated sulfate
intermediate; converts ATP and sulfate to diphosphate and
adenylylsulfate and then ATP and adenylyl sulfate to ADP
and 3'-phosphoadenylyl sulfate; the activated intermediate
is transferred to the nodulation factors by NodH; may
interact with NodP and NodQ; similar to the CysD and CysN
proteins from Escherichia coli involved in cysteine
biosynthesis"
/codon_start=1
/transl_table=11
/product="bifunctional sulfate adenylyltransferase subunit
1/adenylylsulfate kinase"
/protein_id="YP_001042118.1"
/db_xref="GI:126461004"
/db_xref="InterPro:IPR002650"
/db_xref="InterPro:IPR002891"
/db_xref="GeneID:4898030"
/translation="MSLPNHAPVPELYVSYDSAQKLKADAGSLPSWDLTQRQICDLEL
LMNGGFHPLKGFLTEADYDGVVENMRLADGRLWPMPVTLDVSEKFAEGVEPGQDIALR
DAEGVILAILSVTDKWVPNKDREAEKVFGANDLAHPAVNYLHHTAGKVYLGGPITGIQ
PPVHYDFKMRRDTPNELRAFFRKMGWTRVVAFQTRNPLHRAHQELTFRAAREAQANLL
IHPVVGMTKPGDIDHFTRVRCYEAVLDQYPSSTTTLSLLNLAMRMGGPREAVWHGLIR
RNHGCTHMIVGRDHAGPGKNSEGKDFYGPYDAQELFKAHADEIGVEMVDFKQMVYVQE
KAQYFPVDEVPEGSTVLDISGTELRRRLREGLEIPEWFSFPDVVSELRRTSPARSKQG
FTVFFTGLSGSGKSTIANALMVKLMEMGGRPVTLLDGDVVRKHLSSELGFSKEHRDIN
IKRIGYVASEITKNGGIAICAPIAPYTATRRAVREMIEAFGAFIEVHVATPIEECERR
DRKGLYKLAREGKIKEFTGISDPYEVPAKAELVVDTANVSVDHCAHQVILKLEQMGLI
RA"
misc_feature complement(247154..248857)
/locus_tag="Rsph17029_0227"
/note="bifunctional sulfate adenylyltransferase subunit
1/adenylylsulfate kinase protein; Validated; Region:
PRK05537"
/db_xref="CDD:180124"
misc_feature complement(247709..248773)
/locus_tag="Rsph17029_0227"
/note="ATP-sulfurylase; Region: ATPS; cd00517"
/db_xref="CDD:173895"
misc_feature complement(order(247871..247879,247985..247990,
247994..248002,248075..248077,248243..248245,
248252..248254,248270..248284))
/locus_tag="Rsph17029_0227"
/note="active site"
/db_xref="CDD:173895"
misc_feature complement(248252..248263)
/locus_tag="Rsph17029_0227"
/note="HXXH motif; other site"
/db_xref="CDD:173895"
misc_feature complement(248156..248188)
/locus_tag="Rsph17029_0227"
/note="flexible loop; other site"
/db_xref="CDD:173895"
misc_feature complement(247226..247678)
/locus_tag="Rsph17029_0227"
/note="Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to form
3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically 'activated' sulfate
form important for the assimilation of...; Region: APSK;
cd02027"
/db_xref="CDD:30200"
misc_feature complement(order(247280..247285,247334..247336,
247433..247441,247508..247510,247517..247519,
247532..247534,247559..247561,247637..247648,
247652..247657))
/locus_tag="Rsph17029_0227"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:30200"
gene complement(249049..249987)
/locus_tag="Rsph17029_0228"
/db_xref="GeneID:4898031"
CDS complement(249049..249987)
/locus_tag="Rsph17029_0228"
/EC_number="1.8.1.9"
/note="KEGG: rsp:RSP_1576 thioredoxin reductase;
TIGRFAM: thioredoxin reductase;
PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase"
/codon_start=1
/transl_table=11
/product="thioredoxin reductase"
/protein_id="YP_001042119.1"
/db_xref="GI:126461005"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR005982"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:4898031"
/translation="MAETRHTRVLIIGSGPAGYTAAVYSARAMLNPLLIQGLQPGGQL
TITTEVENWPGDREVQGPELMVRMEDHARAMGAEIVSDYISSLDLSQRPFTAQADSGM
TYTADAVILATGAQARWLGLPSEERFKGFGVSACATCDGFFYRGKEVVVAGGGNTAVE
EALFLTNFASKVTLVHRRDSLRAEKILQDRLFKHPKIEVLWNHTIEEVAGTEAPLGVT
GIVARNVLTGETTEVPCEGFFVAIGHAPASELVKDQLELHHGGYVKVEPGTTRTSIPG
VFAAGDLTDHVYRQAVTSAGMGCMAALDAERFLAGA"
misc_feature complement(249061..249963)
/locus_tag="Rsph17029_0228"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:200090"
misc_feature complement(249334..249543)
/locus_tag="Rsph17029_0228"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 250209..250709
/locus_tag="Rsph17029_0229"
/db_xref="GeneID:4898039"
CDS 250209..250709
/locus_tag="Rsph17029_0229"
/note="PFAM: regulatory protein, AsnC/Lrp family;
KEGG: rsp:RSP_1577 proline dehydrogenase transcriptional
activator"
/codon_start=1
/transl_table=11
/product="AsnC family transcriptional regulator"
/protein_id="YP_001042120.1"
/db_xref="GI:126461006"
/db_xref="InterPro:IPR000485"
/db_xref="GeneID:4898039"
/translation="MAGSKLDPIDRHILAELQSDGRMTNVELAKRVGISAPPCLRRVR
TLEEAGYIRGYHADIDPRELGFEVQVFAMVRLHSQAEADLSAFESRCRAWPLVRECHM
LNGEIDFILKCVAPDLPSFQSFLTQELTAAENVASVKTSLVIRCAKDEPGVPFEVLEA
RLQRSA"
misc_feature 250209..250673
/locus_tag="Rsph17029_0229"
/note="Transcriptional regulators [Transcription]; Region:
Lrp; COG1522"
/db_xref="CDD:31711"
misc_feature 250227..>250373
/locus_tag="Rsph17029_0229"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(250230..250238,250278..250286,250311..250322,
250326..250331,250338..250343,250347..250352,
250368..250373)
/locus_tag="Rsph17029_0229"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(250278..250280,250287..250289)
/locus_tag="Rsph17029_0229"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
misc_feature 250428..250643
/locus_tag="Rsph17029_0229"
/note="AsnC family; Region: AsnC_trans_reg; pfam01037"
/db_xref="CDD:189815"
gene complement(250830..251582)
/locus_tag="Rsph17029_0230"
/db_xref="GeneID:4898047"
CDS complement(250830..251582)
/locus_tag="Rsph17029_0230"
/note="PFAM: protein of unknown function DUF152;
KEGG: rsp:RSP_1578 conserved hypothetical protein
TIGR00726"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042121.1"
/db_xref="GI:126461007"
/db_xref="InterPro:IPR003730"
/db_xref="InterPro:IPR013513"
/db_xref="GeneID:4898047"
/translation="MMELITADALAPFRHGFFTRKGGASSGVFAGLNCGPGSSDLAEV
VTINRARVAEAMGVTADRLVTVNQVHSPDVLTVTGPLAERPRADALVTAVPGLAIAVL
TADCQPVLMADAEAGVVAAAHAGWRGTKAGVLEATLAAMEDLGADRARVAAVIGPTIS
QAAYEVGPEFVEEFLDEDPEAARFFAQGPGDRALFDLPAFGLARLRAAGVGQAEWTRH
CTYRDPERFFSYRRTTHAGEADYGRLISAIRL"
misc_feature complement(250833..251582)
/locus_tag="Rsph17029_0230"
/note="Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism];
Region: yfiH; COG1496"
/db_xref="CDD:31685"
misc_feature complement(250833..251534)
/locus_tag="Rsph17029_0230"
/note="Multi-copper polyphenol oxidoreductase laccase;
Region: Cu-oxidase_4; pfam02578"
/db_xref="CDD:202292"
gene complement(251579..252640)
/locus_tag="Rsph17029_0231"
/db_xref="GeneID:4898043"
CDS complement(251579..252640)
/locus_tag="Rsph17029_0231"
/note="PFAM: protein of unknown function DUF185;
KEGG: rsp:RSP_1579 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042122.1"
/db_xref="GI:126461008"
/db_xref="InterPro:IPR003788"
/db_xref="GeneID:4898043"
/translation="MTALAALLARRIGATGPVTVADYMAECLLHPEHGYYSTREPFGA
AGDFTTAPEISQMFGELLGLCLAQAWLDQGQPSPVTLAELGPGRGTLMADLLRATRGV
PGFHDAARVHLVEASPRLRALQREMLGGHPAAWLDRAADLPEGPLFLVANEFFDALPI
RQFVRGPEGWRERMVGLTEGRLTWGLGPETALAALAHRLEDTAPGDVVELCPAAGPIM
AEIARRIAAAGGLALAVDYGGWRSRGDTLQALRAHRFDDPLAAPGEADLTAHVDFEAL
AQAAAPCGTALVPQGALLLRLGLAQRAARLARSLTGEALASHEAASRRLTDATEMGTL
FKALAVFPPQGPAPAGFDT"
misc_feature complement(251585..252613)
/locus_tag="Rsph17029_0231"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(251801..252460)
/locus_tag="Rsph17029_0231"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene complement(252637..253515)
/locus_tag="Rsph17029_0232"
/db_xref="GeneID:4898051"
CDS complement(252637..253515)
/locus_tag="Rsph17029_0232"
/note="transfers the N-acyl diglyceride moiety to the
prospective N-terminal cysteine in prolipoprotein"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_001042123.1"
/db_xref="GI:126461009"
/db_xref="InterPro:IPR001640"
/db_xref="InterPro:IPR001991"
/db_xref="GeneID:4898051"
/translation="MSYIPFPDISPELFSIELFGVTFALRWYALAYIAGLLIGWRLVL
RMIRAERLWSFGPPMTEDQLERLLTWVILGVILGGRLGFVLFYQPAHYLAHPLDILKV
WEGGMSFHGGFLGVMTALVAFCLKERISILPVADLLAAATPPGLFLGRIANFINAELW
GRPTTLPWGVAFPGEAAQSCPGIEGICARHPSQIYEAGLEGILLFAVLSLLVWRRGWL
HWPGSVSGMFLAGYGATRFLVEFVRQPDAQFVSAGNPLGLAWQISGYGLTMGQILSLP
MILLGLYLILRSRRTA"
misc_feature complement(252703..253515)
/locus_tag="Rsph17029_0232"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:178826"
gene 253620..253868
/locus_tag="Rsph17029_0233"
/db_xref="GeneID:4898059"
CDS 253620..253868
/locus_tag="Rsph17029_0233"
/note="PFAM: protein of unknown function DUF526;
KEGG: rsp:RSP_1581 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042124.1"
/db_xref="GI:126461010"
/db_xref="InterPro:IPR007475"
/db_xref="GeneID:4898059"
/translation="MQTRNKFFDDMSQLMTNAMGVAQGARTEAETAMKGLLDRWMADR
DFVTREEFDAVRAMAQKAREENEALSARLAALEAKSKG"
misc_feature 253620..>253802
/locus_tag="Rsph17029_0233"
/note="Membrane fusogenic activity; Region: BMFP;
pfam04380"
/db_xref="CDD:190961"
gene 254288..254557
/locus_tag="Rsph17029_0234"
/db_xref="GeneID:4898067"
CDS 254288..254557
/locus_tag="Rsph17029_0234"
/note="KEGG: rsp:RSP_1582 putative sulfate
transporter/antisigma-factor antagonist"
/codon_start=1
/transl_table=11
/product="putative sulfate transporter/antisigma-factor
antagonist"
/protein_id="YP_001042125.1"
/db_xref="GI:126461011"
/db_xref="InterPro:IPR002645"
/db_xref="GeneID:4898067"
/translation="MTPLTLSGTLRLQDAPGLIERLAAALAAGDVEIDPSGVLAVDAA
AVQVLVSAARTAGATGRRLVLAQDHPALTDAFAGLALDPVPEGLA"
gene 254554..254919
/locus_tag="Rsph17029_0235"
/db_xref="GeneID:4898073"
CDS 254554..254919
/locus_tag="Rsph17029_0235"
/note="PFAM: response regulator receiver;
KEGG: rsp:RSP_1583 chemotaxis response regulator, CheY3"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_001042126.1"
/db_xref="GI:126461012"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:4898073"
/translation="MSRTVLAVDDSPSVRCMVAMTLREAGYRVIEATDGREGLEKALS
EPVDAIITDQNMPNLDGLGFIRAFREHPESKGKPIIFLSTDSADTLKQQAREAGAMGW
MVKPFTQPQLLAVIKKVLG"
misc_feature 254566..254904
/locus_tag="Rsph17029_0235"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 254569..254913
/locus_tag="Rsph17029_0235"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(254578..254583,254710..254712,254734..254736,
254800..254802,254857..254859,254866..254871)
/locus_tag="Rsph17029_0235"
/note="active site"
/db_xref="CDD:29071"
misc_feature 254710..254712
/locus_tag="Rsph17029_0235"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(254719..254724,254728..254736)
/locus_tag="Rsph17029_0235"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 254866..254874
/locus_tag="Rsph17029_0235"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 254916..256880
/locus_tag="Rsph17029_0236"
/db_xref="GeneID:4895723"
CDS 254916..256880
/locus_tag="Rsph17029_0236"
/note="PFAM: CheW domain protein; ATP-binding region,
ATPase domain protein domain protein; Signal transducing
histidine kinase, homodimeric; Hpt domain protein;
KEGG: rsp:RSP_1584 chemotaxis histidine protein kinase"
/codon_start=1
/transl_table=11
/product="CheA signal transduction histidine kinase"
/protein_id="YP_001042127.1"
/db_xref="GI:126461013"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR002545"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR004105"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="InterPro:IPR008208"
/db_xref="GeneID:4895723"
/translation="MMDDDMMAVFRQEATDLIESLERGLLDLSDSPEDRDLINAVFRD
LHTIKGSGAMFGFADMAAFVHAFESAFDLLRSGKAVVTPEIIRLALSARDEIIGFLAD
EPDPDGRRPAILSALEAAVGGSGVATAPAVAAAAAPPADRLWFRLTGNALALGARPDL
LLAELRELGATDIRADLSAVPPLDALDPEVCMIGWSMSFPNRVTREAIENVFLFNEVE
LRLEAAPATAPAAAPVPAAPVSAAAAPPPPAAPRKAADEATGADKAGATMRVAAERLD
HLMDRVGELVIADARLLQLAQQSRDPALMAAAEEISRLAAGLRDTTMRIRMVPVRSMV
GRFRRLIHGLSEMVGKPVSFVVLGEETELDKTVIEQLADPIVHMLRNSVDHGLEAPAD
RAAAGKPAEGRITLEAEQSGAEVVIRISDDGRGLNRDRIRAKAIANGIIGPDAILTES
AMNALILEPGFSTAEAITEISGRGVGMDVVKKTIEGLRGSIEVQSVEGRGTTFTLRLP
LTLAIIEGLLVEVAGERFSIPLAAVQEIVELPPDRREEDGSADFLDVRDRLVPLVRLR
RIFSSPGTPDEFQTVVIVRAGETRAGAVVDRIIGTNQIVIKQMSRLHSGIRAFSGATI
LGDGTVALILDVPHLAGVGQGVEDRRGAAA"
misc_feature 254916..256850
/locus_tag="Rsph17029_0236"
/note="Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal transduction
mechanisms]; Region: CheA; COG0643"
/db_xref="CDD:30988"
misc_feature 254922..255218
/locus_tag="Rsph17029_0236"
/note="Histidine Phosphotransfer domain, involved in
signalling through a two part component systems in which
an autophosphorylating histidine protein kinase serves as
a phosphoryl donor to a response regulator protein; the
response regulator protein is...; Region: HPT; cd00088"
/db_xref="CDD:28972"
misc_feature order(255051..255053,255060..255065,255108..255110,
255117..255119)
/locus_tag="Rsph17029_0236"
/note="putative binding surface; other site"
/db_xref="CDD:28972"
misc_feature 255051..255053
/locus_tag="Rsph17029_0236"
/note="active site"
/db_xref="CDD:28972"
misc_feature 255714..255890
/locus_tag="Rsph17029_0236"
/note="Signal transducing histidine kinase, homodimeric
domain; Region: H-kinase_dim; pfam02895"
/db_xref="CDD:202454"
misc_feature 256026..256436
/locus_tag="Rsph17029_0236"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(256044..256046,256056..256058,256065..256067,
256170..256172,256176..256178,256182..256184,
256188..256193,256335..256346,256392..256394,
256398..256400,256413..256418,256422..256424)
/locus_tag="Rsph17029_0236"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 256056..256058
/locus_tag="Rsph17029_0236"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(256182..256184,256188..256190,256335..256337,
256341..256343)
/locus_tag="Rsph17029_0236"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 256446..256832
/locus_tag="Rsph17029_0236"
/note="CheA regulatory domain; CheA is a histidine protein
kinase present in bacteria and archea. Activated by the
chemotaxis receptor a histidine phosphoryl group from CheA
is passed directly to an aspartate in the response
regulator CheY. This signalling...; Region: CheA_reg;
cd00731"
/db_xref="CDD:29681"
gene 256877..257368
/locus_tag="Rsph17029_0237"
/db_xref="GeneID:4898021"
CDS 256877..257368
/locus_tag="Rsph17029_0237"
/note="PFAM: CheW domain protein;
KEGG: rsp:RSP_1585 chemotaxis protein, CheW2"
/codon_start=1
/transl_table=11
/product="putative CheW protein"
/protein_id="YP_001042128.1"
/db_xref="GI:126461014"
/db_xref="InterPro:IPR002545"
/db_xref="GeneID:4898021"
/translation="MSNIIDLKSAAMMTVVTMRLGRQMLAIPASALREILDPLPVTRV
PTADRSVWGVINVRGAVVPVAELRFAFGIAEESRTEASKMLVVEVDLAGEPLVVAVAA
DAVLEVSELDRAAMEPLPPKGSSWPQSFVQGVFRTRKGLLLLPHLSNIFAAQASAAGV
AVA"
misc_feature 256910..257329
/locus_tag="Rsph17029_0237"
/note="CheW, a small regulator protein, unique to the
chemotaxis signalling in prokaryotes and archea. CheW
interacts with the histidine kinase CheA, most likely with
the related regulatory domain of CheA. CheW is proposed to
form signalling arrays together...; Region: CheW; cd00732"
/db_xref="CDD:29682"
misc_feature order(257042..257059,257141..257143,257159..257161,
257318..257329)
/locus_tag="Rsph17029_0237"
/note="putative CheA interaction surface; other site"
/db_xref="CDD:29682"
gene 257492..258028
/locus_tag="Rsph17029_0238"
/db_xref="GeneID:4896796"
CDS 257492..258028
/locus_tag="Rsph17029_0238"
/note="PFAM: CheW domain protein;
KEGG: rsp:RSP_1586 chemotaxis protein, CheW3"
/codon_start=1
/transl_table=11
/product="putative CheW protein"
/protein_id="YP_001042129.1"
/db_xref="GI:126461015"
/db_xref="InterPro:IPR002545"
/db_xref="GeneID:4896796"
/translation="MISMTASSSTMQAEPVGPAEAPPVVTFMAGEALYALPVERVQEI
LDLQPVAPLPNAPAHLLGLCDVRGAGVPVVDLRSLLGLPPTEDTGHSRILVTWVASAG
ARHVVGLKTERVIEVTALDEGRMQQMSSADMLNWTDTAVMGIGKRNGAFVTLLDIDRL
MDPSRLGLQADLRQGELQ"
misc_feature 257567..257986
/locus_tag="Rsph17029_0238"
/note="CheW, a small regulator protein, unique to the
chemotaxis signalling in prokaryotes and archea. CheW
interacts with the histidine kinase CheA, most likely with
the related regulatory domain of CheA. CheW is proposed to
form signalling arrays together...; Region: CheW; cd00732"
/db_xref="CDD:29682"
misc_feature order(257684..257701,257783..257785,257789..257791,
257963..257986)
/locus_tag="Rsph17029_0238"
/note="putative CheA interaction surface; other site"
/db_xref="CDD:29682"
gene 258025..258861
/locus_tag="Rsph17029_0239"
/db_xref="GeneID:4896816"
CDS 258025..258861
/locus_tag="Rsph17029_0239"
/EC_number="2.1.1.80"
/note="PFAM: MCP methyltransferase, CheR-type;
KEGG: rsp:RSP_1587 chemotaxis methyltransferase, CheR2"
/codon_start=1
/transl_table=11
/product="protein-glutamate O-methyltransferase"
/protein_id="YP_001042130.1"
/db_xref="GI:126461016"
/db_xref="InterPro:IPR000780"
/db_xref="GeneID:4896816"
/translation="MSQALRPAHDQRFSDLIRSRTGIQLPVHRRQMIESRLRPRIAAV
GATGFEGYLEQLFDHGLLDDELPLVIDLLTTNKTDFYRESAHFDVLVDKIVPETIRHA
TPHAPRLKIWSAASSEGAEAYTAAIVLAEAQRAGHRFSYAILGTDISHRMLERARRAI
YTAEQLSPVPAELRARYTMAGRAPSHAGTARIVPELRDRVQFMHLNLMDSTYPVDRDV
DVIFLRNVLIYFGPEDQAAVIARMAGHLRPGGYLMVGHSESMVVSHPQMKQHSPSVFR
KT"
misc_feature 258043..258858
/locus_tag="Rsph17029_0239"
/note="Methyltransferase, chemotaxis proteins; Region:
MeTrc; smart00138"
/db_xref="CDD:197535"
misc_feature 258043..258210
/locus_tag="Rsph17029_0239"
/note="CheR methyltransferase, all-alpha domain; Region:
CheR_N; pfam03705"
/db_xref="CDD:202731"
misc_feature <258451..258786
/locus_tag="Rsph17029_0239"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 258864..259973
/locus_tag="Rsph17029_0240"
/db_xref="GeneID:4896412"
CDS 258864..259973
/locus_tag="Rsph17029_0240"
/EC_number="3.1.1.61"
/note="PFAM: CheB methylesterase; response regulator
receiver;
KEGG: rsp:RSP_1588 chemotaxis methylesterase, CheB1"
/codon_start=1
/transl_table=11
/product="response regulator receiver modulated CheB
methylesterase"
/protein_id="YP_001042131.1"
/db_xref="GI:126461017"
/db_xref="InterPro:IPR000673"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:4896412"
/translation="MTTHAAAPSTRVLIVDDSAAARAMFKVIVESDPALQVMAAVPDA
FAAARAMRTELPDVILLDLELPGMDGLTFLRKIMQQHPIPVVVCSSHVGAGTEAMVSA
LELGAREVISKPAARNDLERQEASIRICDAIRAATETTRRRSQPEPRPLAPGPKLTAD
EILPARPPRPVPETMPVVCIGASTGGTEALRDVLTALPASAPPIVIVQHMPRGFTAAF
ARRLDSLCAIEVLEAEDEMQVMPGRAIIAQGDRHLLLRRRNQGYRVSVLDGAYVCRHR
PSVDVLFRSAAQEAGGNALGVIMTGMGDDGARCMAEMRAAGAETIAQNEESCVVYGMP
REAVAHGGVGKVEPLDRLAARIMEFGRRHTERTVR"
misc_feature 258894..259937
/locus_tag="Rsph17029_0240"
/note="chemotaxis-specific methylesterase; Provisional;
Region: PRK00742"
/db_xref="CDD:179106"
misc_feature 258900..259223
/locus_tag="Rsph17029_0240"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(258909..258914,259047..259049,259071..259073,
259128..259130,259191..259193,259200..259205)
/locus_tag="Rsph17029_0240"
/note="active site"
/db_xref="CDD:29071"
misc_feature 259047..259049
/locus_tag="Rsph17029_0240"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(259056..259061,259065..259073)
/locus_tag="Rsph17029_0240"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 259200..259208
/locus_tag="Rsph17029_0240"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 259392..259940
/locus_tag="Rsph17029_0240"
/note="CheB methylesterase; Region: CheB_methylest;
pfam01339"
/db_xref="CDD:144802"
gene 259970..261712
/locus_tag="Rsph17029_0241"
/db_xref="GeneID:4896068"
CDS 259970..261712
/locus_tag="Rsph17029_0241"
/note="KEGG: rsp:RSP_1589 transducer-like protein, TlpC"
/codon_start=1
/transl_table=11
/product="transducer-like protein, TlpC"
/protein_id="YP_001042132.1"
/db_xref="GI:126461018"
/db_xref="GeneID:4896068"
/translation="MKLEPDLPEAIRMAQPAHPLDFVLLSTEQTFLRAGETLAQAVRH
LNDLRVDFGRLDAALGPGQARRFLSLTAETGTQASCLAGEFVQFEEASRALRTAVGAM
RAEVTDLMATIRAISIVKLQARIIGNMLTGSRQRVEAFTGGLTRMAAEAADLVAEVDE
AMNEIAAETAAMDDEAAHLSQTLRELVLPNLTAIGAAAAEVSLDRQRMAEGHEALARR
MEAIFGAVSHLILALQAGDSARQRFEHVRHLTSDALAAAAGETGLEAVLLDLGVTQTA
ATVRGLTVHLGAAQGTFLEVQGSASAAIGLASGLYLGDASRGSGAIQTMMGRAQTVET
GLTRCGAHLHRLAGHAARVAAHLEKIRHHEGRMRRIEDQVRLFGLNAVIVCAKLGQEG
RALQEISRQLRDLTQISAEVFTRLHGRLERTQERAATIGSEAVAGLEREMGRVADGAQ
AVRALLEEAEAAHAAAGNAFGKAGRILTSSLETAAGLMGNYRRNLVSLQAFEEQLVRR
RAVVSGPLDLTPAAEGLLAAVRKSYTVPEEREIHDAIVRAALPSHTEEEAAPPRVEAG
PGAGSEEDLADIFF"
gene 261760..262761
/locus_tag="Rsph17029_0242"
/db_xref="GeneID:4897382"
CDS 261760..262761
/locus_tag="Rsph17029_0242"
/note="KEGG: rsp:RSP_1591 predicted glutathione
S-transferase"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_001042133.1"
/db_xref="GI:126461019"
/db_xref="GeneID:4897382"
/translation="MGELIEGVWHPNWYDTASNGGRFVRSRARFRNWITADGSPGPSG
EGGFPAEAGRYHLYVAHACPWAHRTMIFRVLKDLAPLIDVSVVHPEMLEDGWTFDRSF
PGATGDRLHGLAFLREIYLKADPGISARVTVPVLWDRKRETIVSNESAEIIRMFNAAF
DHLTGNRVDFLPDGDLDEIDRLNDRIYGTVNNGVYRAGFATTQEAYDEAAAPLFETLD
WLEERLATRRYLVGDRLTEADWRLFTTLVRFDKVYHTHFKCNRRQIVQYPNLWGWLRE
LWQVPGVAETVHFDHIVRHYYFSHDTINPHRIVPLTPDPDFAAPHGRDQLFQASRLR"
misc_feature 261760..262740
/locus_tag="Rsph17029_0242"
/note="Predicted glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones]; Region: ECM4; COG0435"
/db_xref="CDD:30784"
misc_feature 261943..262236
/locus_tag="Rsph17029_0242"
/note="Glutathione S-transferase, N-terminal domain;
Region: GST_N_2; pfam13409"
/db_xref="CDD:205587"
misc_feature 262273..262698
/locus_tag="Rsph17029_0242"
/note="C-terminal, alpha helical domain of Class
Omega-like Glutathione S-transferases; Region:
GST_C_Omega_like; cd03190"
/db_xref="CDD:198299"
misc_feature order(262297..262302,262309..262314,262321..262323,
262414..262416)
/locus_tag="Rsph17029_0242"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:198299"
misc_feature order(262318..262320,262330..262335,262342..262347,
262354..262356,262468..262470,262477..262482,
262489..262491,262501..262503,262516..262518,
262600..262602,262630..262635,262642..262647,
262678..262680)
/locus_tag="Rsph17029_0242"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198299"
misc_feature order(262327..262332,262492..262494,262501..262503)
/locus_tag="Rsph17029_0242"
/note="putative substrate binding pocket (H-site)
[chemical binding]; other site"
/db_xref="CDD:198299"
gene complement(262731..264188)
/locus_tag="Rsph17029_0243"
/db_xref="GeneID:4897362"
CDS complement(262731..264188)
/locus_tag="Rsph17029_0243"
/note="PFAM: response regulator receiver; sigma-54 factor,
interaction domain-containing protein; helix-turn-helix,
Fis-type;
SMART: AAA ATPase;
KEGG: rsp:RSP_1590 two component, sigma54 specific,
transcriptional regulator, fis family"
/codon_start=1
/transl_table=11
/product="two component, sigma54 specific, Fis family
transcriptional regulator"
/protein_id="YP_001042134.1"
/db_xref="GI:126461020"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4897362"
/translation="MTQVTRSTGNEGHARPAAGSAEASRPRPILLIEDTPSLQMVYRS
VLASAGHRVAVAGTAAEGLSRFRETLPNVVLLDLMLPDRNGLDLMQDMLRLRPETNVI
VITANGSINKAVEAMRAGAHEFLVKPFDEQRFLGAVENASLAREARPTRRPPPQPAGP
APVTGAFLGSSEAMARIHAKIRSAARSMATIFITGESGTGKELCALAVHDTSPRAAGP
FIALNCGAIPQDLLESEVFGHVKGSFTGAIADKPGAAAAADGGTLFLDEICEMAPALQ
TKLLRFLQTSMVQPVGATRPRKVNVRIVCATNRDPLDAVRRGHFREDLYYRLFVVPIH
MPPLRDRGNDVIEIAEAALSRFAAEEGREFFGLDAEVKALFRRHPWPGNVRQVLNVIR
NVVVLNEGGLVTMRMLPDAFTDHPSPPEDLPPPSLPAPAEPMLDGLIGRTLAEIEQIV
IEATIARHGGSVPKAARMLDVSPSTLYRKREAWKS"
misc_feature complement(262752..264122)
/locus_tag="Rsph17029_0243"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature complement(263766..264101)
/locus_tag="Rsph17029_0243"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(263805..263810,263817..263819,
263874..263876,263934..263936,263958..263960,
264087..264092))
/locus_tag="Rsph17029_0243"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(263958..263960)
/locus_tag="Rsph17029_0243"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(263934..263942,263946..263951))
/locus_tag="Rsph17029_0243"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(263802..263810)
/locus_tag="Rsph17029_0243"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(263178..263669)
/locus_tag="Rsph17029_0243"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(263583..263606)
/locus_tag="Rsph17029_0243"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(263265..263267,263391..263393,
263580..263603))
/locus_tag="Rsph17029_0243"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(263388..263405)
/locus_tag="Rsph17029_0243"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(263208..263210)
/locus_tag="Rsph17029_0243"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(262740..262865)
/locus_tag="Rsph17029_0243"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(264185..264736)
/locus_tag="Rsph17029_0244"
/db_xref="GeneID:4897675"
CDS complement(264185..264736)
/locus_tag="Rsph17029_0244"
/note="KEGG: rsp:RSP_6007 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042135.1"
/db_xref="GI:126461021"
/db_xref="InterPro:IPR008207"
/db_xref="GeneID:4897675"
/translation="MTASHDPSADGSQGAFRHPPGAELWATVAEALDRLAGLETSVDP
ARLAPLRETLLRLRDQVGALAPPPVPETVDEGRFRRLLEIAGPDTANELVHRLHVDLK
STRERLDEAMAGTDWVEIRAQTHVLMSLAGTVGAGGLQRLSEALNAAAHQRDRDRAAG
LRTELLMRLDGLLAFVAQQRDGA"
gene complement(264972..266864)
/locus_tag="Rsph17029_0245"
/db_xref="GeneID:4897609"
CDS complement(264972..266864)
/locus_tag="Rsph17029_0245"
/note="PFAM: AMP-dependent synthetase and ligase;
KEGG: rsp:RSP_1592 possible acyl-CoA sythetase"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_001042136.1"
/db_xref="GI:126461022"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4897609"
/translation="MAYASLYKWSLEDPNGFWMKAAEQIDWVSPPSKALFDEKEPFYE
WFADGQVNACWNAVDRHVEAGRGKQIAIVHESPITHSSKGITYAELQARVASLAGALR
AKGVEKGDRVIIYMPMIPEALEAMLACARLGAIHSVVFGGFAAHELAVRIDDCTPKAI
IAASCGLEPSRVVHYKPLLDQAIEEATHKPDFCVIFQREQEVAKLIEGRDVAWHTFQY
GVEPAECVPVEGNHPAYILYTSGTTGQPKGVVRATGGHLVALNWTMKAIYDIDAGDVF
WAASDVGWVVGHSYICYGPLIAGATTIVYEGKPVGTPDAGAFWRVMQNHKVKTFFTAP
TALRAIKREDPQGALIQDYNLRNLKALFLAGERADPDTIVWAQKNVGVPVIDHWWQTE
SGWAMAANPLGIEALPVKIGSPSLPMPGYDVRVLDEGGHQLEAGQLGAIAIKLPLPPG
TLPTLWNAQDRFVKSYLTHFPGYYETGDAGYIDEDGYIYIMARTDDVINVAGHRLSTG
AMEEVLASHEDVAECAVIGVTDALKGQSPLGFLCLNKGSNRAAEDVVKECVKLVREKI
GPVADFKRACVVDRLPKTRSGKILRGTMVKIADGQEFKMPATIDDPAILDEIRVALEA
VGYPRA"
misc_feature complement(264996..266864)
/locus_tag="Rsph17029_0245"
/note="propionyl-CoA synthetase; Provisional; Region:
prpE; PRK10524"
/db_xref="CDD:182517"
misc_feature complement(266637..266861)
/locus_tag="Rsph17029_0245"
/note="Domain of unknown function (DUF3448); Region:
DUF3448; pfam11930"
/db_xref="CDD:204782"
misc_feature complement(265290..266609)
/locus_tag="Rsph17029_0245"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(265032..265160)
/locus_tag="Rsph17029_0245"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene complement(267025..269304)
/locus_tag="Rsph17029_0246"
/db_xref="GeneID:4896567"
CDS complement(267025..269304)
/locus_tag="Rsph17029_0246"
/EC_number="1.1.1.39"
/note="NAD-dependent; catalyzes the oxidative
decarboxylation of malate to form pyruvate; does not
decarboxylate oxaloacetate"
/codon_start=1
/transl_table=11
/product="malic enzyme"
/protein_id="YP_001042137.1"
/db_xref="GI:126461023"
/db_xref="InterPro:IPR002505"
/db_xref="InterPro:IPR012301"
/db_xref="InterPro:IPR012302"
/db_xref="GeneID:4896567"
/translation="MDEARQDNARHAALDYHEFPKPGKLEIRATKPLANGRDLARAYS
PGVAEACLEIKADPATASRYTSRGNMVGVVTNGTAVLGLGNIGALAAKPVMEGKAVLF
KKFAGIDCFDIELAEPDPLKLAEIVCALEPTFGAINLEDIKAPDCFIVEKICRERMNI
PVFHDDQHGTAIVVGAAATNALHVAGKRFEDIKVVSTGGGAAGIACLNMLLKLGVKRE
NVWLCDIAGLVWKGREAEMTPQKAEYAQDSDLRTLAEVIEGADLFLGLSGPGVLTPAM
VERMAERPIIFALANPTPEILPEEVRSIRPNAIIATGRSDYPNQVNNVLCFPFIFRGA
LDVGATTINDEMQLACIEGIASLARATTSAEAAAAYKGEPMSFGADYLIPKPFDPRLI
GVVALAVARAAMESGVATRPIADLDAYRRRLEGSVFRSALIMRPVFEASAAESRRIVF
AEGEDERVLRAANAVLEETVHKPILIGRPEVVEMRCERAGLPIRPGRDFDLVNPENDP
RYRDYWESYHALMARRGVTPDTARAVMRTNTTAIGAIMVHRGEADSLICGTYGQYLWH
LNYVTQILATRNRRPIGALSLMILEDGPLFVADTHVHHEPTPEEIAETVIGAARHVRR
FGLAPKVALCSSSQFGNLDCSTGRRMRAALEILDERRVDFAYEGEMHIDAALDQGIRD
RIFPGGRFDGPANVLVFGNSDAASGVRNILKVKANGLEVGPILMGMGNLAHIVTASIT
ARGLLNMSALAGTPVTHYG"
misc_feature complement(267028..269304)
/locus_tag="Rsph17029_0246"
/note="malic enzyme; Reviewed; Region: PRK12862"
/db_xref="CDD:183799"
misc_feature complement(268849..269241)
/locus_tag="Rsph17029_0246"
/note="Malic enzyme, N-terminal domain; Region: malic;
pfam00390"
/db_xref="CDD:201200"
misc_feature complement(268096..268806)
/locus_tag="Rsph17029_0246"
/note="NAD(P) binding domain of malic enzyme (ME),
subgroup 2; Region: NAD_bind_2_malic_enz; cd05311"
/db_xref="CDD:133453"
misc_feature complement(order(268336..268338,268342..268344,
268366..268368,268432..268440,268492..268494,
268504..268509,268630..268635,268699..268710))
/locus_tag="Rsph17029_0246"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:133453"
misc_feature complement(267052..268011)
/locus_tag="Rsph17029_0246"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 269515..269907
/locus_tag="Rsph17029_0247"
/db_xref="GeneID:4897665"
CDS 269515..269907
/locus_tag="Rsph17029_0247"
/note="TIGRFAM: cytidine deaminase;
PFAM: CMP/dCMP deaminase, zinc-binding;
KEGG: rsp:RSP_1594 cytidine deaminase"
/codon_start=1
/transl_table=11
/product="cytidine deaminase"
/protein_id="YP_001042138.1"
/db_xref="GI:126461024"
/db_xref="InterPro:IPR002125"
/db_xref="InterPro:IPR006262"
/db_xref="GeneID:4897665"
/translation="MSLLEAATAVRENAYAPYSRFKVGAALRTASGAVHAGCNVENVA
YPEGTCAEAGAIAAMVAAGETRIAEILVIADSPEPVPPCGGCRQKIAEFAGPEVPVTL
CTIDGQSLRTSVADLLPGSFRAAHMDRA"
misc_feature 269524..269856
/locus_tag="Rsph17029_0247"
/note="Cytidine deaminase zinc-binding domain. These
enzymes are Zn dependent. The zinc ion in the active site
plays a central role in the proposed catalytic mechanism,
activating a water molecule to form a hydroxide ion that
performs a nucleophilic attack on...; Region:
cytidine_deaminase; cd01283"
/db_xref="CDD:29826"
misc_feature order(269575..269577,269581..269583,269629..269631,
269635..269637,269662..269670,269761..269763,
269770..269772)
/locus_tag="Rsph17029_0247"
/note="active site"
/db_xref="CDD:29826"
misc_feature order(269662..269670,269758..269763,269770..269772)
/locus_tag="Rsph17029_0247"
/note="catalytic motif [active]"
/db_xref="CDD:29826"
misc_feature order(269662..269664,269668..269670,269761..269763,
269770..269772)
/locus_tag="Rsph17029_0247"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29826"
gene 269909..271216
/gene="deoA"
/locus_tag="Rsph17029_0248"
/db_xref="GeneID:4897868"
CDS 269909..271216
/gene="deoA"
/locus_tag="Rsph17029_0248"
/EC_number="2.4.2.4"
/note="Catalyzes the reversible phosphorolysis of
thymidine, deoxyuridine and their analogues to their
respective bases and 2-deoxyribose 1-phosphate"
/codon_start=1
/transl_table=11
/product="thymidine phosphorylase"
/protein_id="YP_001042139.1"
/db_xref="GI:126461025"
/db_xref="InterPro:IPR000053"
/db_xref="InterPro:IPR000312"
/db_xref="InterPro:IPR013102"
/db_xref="GeneID:4897868"
/translation="MDARSINAKLRRGEVPSAAELGWFAEGLASGHVTDAQAGAFAMA
VCLQGLGEEGRVALTRAMRDSGRVLAWDLPGPVLDKHSTGGIGDCTSLLLAPALAACG
AYVPMISGRGLGHTGGTLDKLEAIPGFRVALGEERLRAQIEDVRCAIVAADEGMAPAD
RRLYLIRDVTGTVESIDLITASILSKKLAAGLEGLVLDVKVGSGAFMKSMDEAEALAR
ALVGTAQGAGCMTSALITDMSQPLATAAGNALEVIEVMETLTGTSINAALWDVTVALG
GEALALGGLAADAEDGAHRIEQALESGHAAEFFARMVAAQGGPVDFVERWPDRLPSAP
VMREVPSLRTGFVLRIDTAALGQAVVHLGGGRLRETDRVNPSVGLADIAGIGEEVSED
LPLAMIHAATEADADAAVAAIQAAYVISDQEPAEPPLIHARIA"
misc_feature 269909..271213
/gene="deoA"
/locus_tag="Rsph17029_0248"
/note="thymidine phosphorylase; Reviewed; Region: deoA;
PRK05820"
/db_xref="CDD:180276"
misc_feature 269912..270109
/gene="deoA"
/locus_tag="Rsph17029_0248"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
misc_feature 270128..>270694
/gene="deoA"
/locus_tag="Rsph17029_0248"
/note="Glycosyl transferase family, a/b domain; Region:
Glycos_transf_3; pfam00591"
/db_xref="CDD:144256"
misc_feature 270944..>271093
/gene="deoA"
/locus_tag="Rsph17029_0248"
/note="Pyrimidine nucleoside phosphorylase C-terminal
domain; Region: PYNP_C; smart00941"
/db_xref="CDD:198009"
gene 271216..272412
/locus_tag="Rsph17029_0249"
/db_xref="GeneID:4895561"
CDS 271216..272412
/locus_tag="Rsph17029_0249"
/EC_number="5.4.2.7"
/note="catalyzes the transfer of phosphate between the C1
and C5 carbons of pentose"
/codon_start=1
/transl_table=11
/product="phosphopentomutase"
/protein_id="YP_001042140.1"
/db_xref="GI:126461026"
/db_xref="InterPro:IPR006124"
/db_xref="InterPro:IPR010045"
/db_xref="InterPro:IPR013553"
/db_xref="GeneID:4895561"
/translation="MPRAFLIVMDSVGCGGAPDAAAFGDAGSNTLGHIAEACAAGRAE
EGRSGPLRLPVLDALGLGRAIELASGLTAPGLGAEPSGRWGAATEVSKGKDTPSGHWE
LAGVPVPWDWHYFPDRCPAFPDDLTAEICRRAGTEGILGNRHASGTAVIEELGAEHLR
TGWPICYTSADSVLQIAAHEEAFGLDRLLALCAGLAPTLHAMRVGRVIARPFTGAPGS
FARTPNRRDYAIAPPAPTLLDIAAAAGRATHAIGKIGDIFSHRGIGQLHKGRDDAALF
DRLDALADTAEEGALTFANFVEFDSLYGHRRDVSGYARALEWFDGRAGAFLARLRPGD
MALFTADHGNDPTFRGTEHTRERVPVLIAGTGAGPLGLCAYADVAATVAAHLGLSNPG
PGRALA"
misc_feature 271216..272403
/locus_tag="Rsph17029_0249"
/note="phosphopentomutase; Provisional; Region: PRK05362"
/db_xref="CDD:180038"
misc_feature 271222..272313
/locus_tag="Rsph17029_0249"
/note="Metalloenzyme superfamily; Region: Metalloenzyme;
pfam01676"
/db_xref="CDD:201916"
gene 272409..273392
/locus_tag="Rsph17029_0250"
/db_xref="GeneID:4896012"
CDS 272409..273392
/locus_tag="Rsph17029_0250"
/EC_number="3.5.4.4"
/note="catalyzes the formation of inosine from adenosine"
/codon_start=1
/transl_table=11
/product="adenosine deaminase"
/protein_id="YP_001042141.1"
/db_xref="GI:126461027"
/db_xref="InterPro:IPR001365"
/db_xref="InterPro:IPR006330"
/db_xref="GeneID:4896012"
/translation="MSLPKIELHLHLEGAAPPAFIRGLAREKSIDISGIFAEDGSYAY
RDFRHFLKVYEAATSVLTGPEDYRRLTLAVLEESAASGVVYSETFLSPDFCGGRDLGA
WREHLHAIEEAAAEAERTMGIALRAIVTPIRHFGPDKAKETALCAAETAGRFVTGFGL
AGDESVGKPKDFAWSFDMAREAGLRLTCHAGEWGGPDSIRDALRDLRVERIGHGVRAI
EDLALVDELAERGIVLECCPGSNIALGIYPGWRRHPIGELFRREVKVTVSTDDPPFFH
TTMAREYDRLAEAFDWDEGVFRTIARTALDAAFCDPDTRARIAKLLEPDHA"
misc_feature 272409..273380
/locus_tag="Rsph17029_0250"
/note="Adenosine deaminase [Nucleotide transport and
metabolism]; Region: Add; COG1816"
/db_xref="CDD:32001"
misc_feature 272415..273374
/locus_tag="Rsph17029_0250"
/note="Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or desoxyinosine,
respectively. ADA plays an important role in...; Region:
ADA; cd01320"
/db_xref="CDD:30063"
misc_feature order(272433..272435,272439..272441,272973..272975,
272982..272984,273045..273047,273216..273221)
/locus_tag="Rsph17029_0250"
/note="active site"
/db_xref="CDD:30063"
misc_feature order(272439..272441,272445..272447,272892..272894,
272982..272984,273216..273221)
/locus_tag="Rsph17029_0250"
/note="purine riboside binding site [chemical binding];
other site"
/db_xref="CDD:30063"
gene 273385..274017
/gene="upp"
/locus_tag="Rsph17029_0251"
/db_xref="GeneID:4896505"
CDS 273385..274017
/gene="upp"
/locus_tag="Rsph17029_0251"
/note="Catalyzes the formation of uracil and
5-phospho-alpha-D-ribosy 1-diphosphate from UMP and
diphosphate"
/codon_start=1
/transl_table=11
/product="uracil phosphoribosyltransferase"
/protein_id="YP_001042142.1"
/db_xref="GI:126461028"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR005765"
/db_xref="GeneID:4896505"
/translation="MLDHLTVVTHPLVQHKLTIMRNKETSTAGFRRLLREISLLLAYE
VTRELDMTTTTIQTPLREMQAPILDGKKLALISILRAGNGLLDGILELVPAARVGFIG
LYRDPETLKPVQYYAKVPDALEDRLVIAVDPMLATGNSSAAAIDLLKEKGAKNIRFLC
LLAAPEGVARMKEAHPDVPIVTAAVDECLDHHGYIVPGLGDAGDRMFGTK"
misc_feature 273574..273939
/gene="upp"
/locus_tag="Rsph17029_0251"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(273619..273621,273625..273627,273778..273786,
273790..273804,273874..273876)
/gene="upp"
/locus_tag="Rsph17029_0251"
/note="active site"
/db_xref="CDD:206754"
gene 274084..275031
/locus_tag="Rsph17029_0252"
/db_xref="GeneID:4896425"
CDS 274084..275031
/locus_tag="Rsph17029_0252"
/note="PFAM: Sporulation domain protein;
KEGG: rsp:RSP_6008 hypothetical protein"
/codon_start=1
/transl_table=11
/product="sporulation domain-containing protein"
/protein_id="YP_001042143.1"
/db_xref="GI:126461029"
/db_xref="InterPro:IPR007730"
/db_xref="GeneID:4896425"
/translation="MLIRAVSAAICALVAGAGAVPAQDGPAETPPSDFVAPQYVDSEG
CVFLRAGVEGAVSWVPRVTRDRKPLCGYPPSLSPVVEASPEDAPAVAADATTAAPQAD
APAMTAETDPAPAAGDPAAKAAAKAAISTVAAAVARSEPDRPAKTWKKRTRFPAVRVQ
PADAAEALALDRLTLGPDEIRPASDMPDEILCPSAVPQPRRFAIKGGGSTVLCIRPGR
GLEQARVPRLPATEMALLARQPRAEAQDGRYVQVGAFLDPANARSVRQSLAALGLPAA
VAEGGALEIVLAGPFNEEASARAALRRLRGTGFRDAFLR"
misc_feature 274813..>274956
/locus_tag="Rsph17029_0252"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene complement(275178..276197)
/locus_tag="Rsph17029_0253"
/db_xref="GeneID:4897198"
CDS complement(275178..276197)
/locus_tag="Rsph17029_0253"
/note="KEGG: rsp:RSP_6009 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042144.1"
/db_xref="GI:126461030"
/db_xref="GeneID:4897198"
/translation="MTALKKYQKLECTGLWRSAPDAQRREVVVNFGEASLTMSDPATE
LALSHWSLPAVERLNPGEQPALYAPGEDSDETLEIEDGDMIAALGTVREALGSTRPRP
GRLRGSVLGGLAVVLLCLGIFWLPGALVDHTAAVVPPATRAEIGRLALADMIRVTGKP
CAAPLGRRAADRLARRLFGNERMTILVVREGVRRPVHLPNRQIIFPRSMVEAADGPEV
LAGYALAEQLRARLQDPLIPVLEHAGLAATFRLLATGELPQDSVDGYAAQLLQGTPAL
LTDEALATRFGEAGVSATPYAFAVDPTGESMLGLVEADELGGSEDKPVLTDEDWVSLQ
GICTD"
gene complement(276278..277927)
/locus_tag="Rsph17029_0254"
/db_xref="GeneID:4897994"
CDS complement(276278..277927)
/locus_tag="Rsph17029_0254"
/note="PFAM: AMP-dependent synthetase and ligase;
KEGG: rsp:RSP_1599 AMP-binding protein"
/codon_start=1
/transl_table=11
/product="AMP-dependent synthetase and ligase"
/protein_id="YP_001042145.1"
/db_xref="GI:126461031"
/db_xref="InterPro:IPR000873"
/db_xref="GeneID:4897994"
/translation="MGWLADERGLEKCAANYAALTPLSHLKRAAEVHTDRTALVNGSI
RLTYGEYHARVSRLASALAGMGIQPGDVVATLLPNIAAHAEAHFGVPACGAILNAINT
RLDLDTVSYILEHGGAKLLLCDTAFLKLAKDACARLEGKAPILVEVCDREAGFSPSGE
VLEYEDLMDRGNPWAPWVMPEDEWESIALNYTSGTTGRPKGVVYHHRGAYLSTYGNAI
AWRMQLYPVYLTIVPLFHCNGWCHTWMVPMLGGTVVCCRDITAKAIYAAIADEGVTHF
GGAPIVLNTLINAAPEDRRSFDQVVEVFTAGAPPPAATLAAIEPLGFNVTQVYGLTEV
YGPATECIWKPEWDETAGEERAALKARTGVAMATLEGAEVHDTHGQPIPRDTVHLGEI
AMRGNMVMKGYYKNPEATAEAFRDGWFRSGDIAFQHPDGYIKITDRAKDIIISGGENV
SSVEVEGVIAHHPAVSLCAVVAKPDERWGEVPCAFVELKRGRQATEEEIIAFARERLA
GFKTPKQVIFCELPKTSTGKIQKFELRAVAKLAVTETEDAR"
misc_feature complement(276311..277909)
/locus_tag="Rsph17029_0254"
/note="acyl-CoA synthetase; Validated; Region: PRK08162"
/db_xref="CDD:181261"
misc_feature complement(276320..277879)
/locus_tag="Rsph17029_0254"
/note="Fatty acyl-CoA synthetases similar to LC-FACS from
Thermus thermophiles and Arabidopsis; Region:
ttLC_FACS_AEE21_like; cd12118"
/db_xref="CDD:213326"
misc_feature complement(order(277328..277333,277337..277354,
277361..277363))
/locus_tag="Rsph17029_0254"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213326"
misc_feature complement(order(276398..276400,276581..276592,
276614..276616,276623..276625,276659..276661,
276932..276949,277007..277012,277073..277075,
277082..277087,277091..277093,277229..277234,
277352..277354))
/locus_tag="Rsph17029_0254"
/note="putative active site [active]"
/db_xref="CDD:213326"
misc_feature complement(order(276581..276583,276596..276598,
276608..276610,276614..276616,276659..276661,
276932..276949,277001..277009,277352..277354))
/locus_tag="Rsph17029_0254"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213326"
misc_feature complement(order(276398..276400,276416..276418,
276584..276592,277010..277012,277073..277075,
277082..277087,277232..277234))
/locus_tag="Rsph17029_0254"
/note="putative CoA binding site [chemical binding]; other
site"
/db_xref="CDD:213326"
gene 278026..278958
/locus_tag="Rsph17029_0255"
/db_xref="GeneID:4898015"
CDS 278026..278958
/locus_tag="Rsph17029_0255"
/note="PFAM: protein of unknown function DUF6,
transmembrane;
KEGG: rsp:RSP_1600 possible transporter, DME family, DMT
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042146.1"
/db_xref="GI:126461032"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4898015"
/translation="MISQDRTRAAAGFILLYAVVIGFTDNYVRVIADEAGLWQFHLTR
SVMALAILAAVAPALGLRLRPVDWRAVAARSAIHGTAMLIYFGALAFLPVAQVAAGLF
TAPIFVLVISRFVYGERIGPVRVLAVLTGFAGVLLVLGPEAMAGASFAAGLPVLAGLL
YGMGNIATRAWCPQESAGTLLGGFFVALGVLGAAGLAVLALVSPPVPAGPDGFVMRGF
VVPSQDFWFWTFVQAAGSLFAVGMMIRAYQAATASRVSVFEYVILPASAIWGWLLWDE
RLSPVAAAGMALIALAGIAIAVGSRPPAATATPA"
misc_feature <278212..278442
/locus_tag="Rsph17029_0255"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(278962..279591)
/locus_tag="Rsph17029_0256"
/db_xref="GeneID:4898028"
CDS complement(278962..279591)
/locus_tag="Rsph17029_0256"
/note="PFAM: Methyltransferase type 11;
KEGG: rsp:RSP_1601 hypothetical protein"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_001042147.1"
/db_xref="GI:126461033"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:4898028"
/translation="MAQHHGHLGAVYDAAGPQEVAALYDRWAETYESEMARAGYRHPA
IGVALLARHLPRGARPLLDAGAGTGLLGEWLEIVGYPEVEALDISAGMLEVARAKGIY
ARCHNLPLGAALPFRDGAFAGIISTGVFTTGHVGAEALPELLRICRPGGVIVLTVKES
LWQGGFAVSLEAAVASGRAGLAEMTEPYVSMPGEPGTTPSRAVALRVTP"
misc_feature complement(279121..>279348)
/locus_tag="Rsph17029_0256"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene complement(279765..281036)
/locus_tag="Rsph17029_0257"
/db_xref="GeneID:4898038"
CDS complement(279765..281036)
/locus_tag="Rsph17029_0257"
/note="TIGRFAM: TRAP dicarboxylate transporter, DctM
subunit;
PFAM: TRAP C4-dicarboxylate transport system permease DctM
subunit;
KEGG: rsp:RSP_1602 TRAP-T family transporter, DctM (12TMs)
subunit"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter subunit DctM"
/protein_id="YP_001042148.1"
/db_xref="GI:126461034"
/db_xref="InterPro:IPR004681"
/db_xref="InterPro:IPR010656"
/db_xref="GeneID:4898038"
/translation="MTWFIVIALMFALFALNMRIYLAMFAAVVAYFVFFSTVPLPIAV
QRIISPTQNTSLLAIPFFVLLGTLLGTTGIAGRLLKLADLMVGRLTGGLGHTNVMLST
LMGGISASNLADAAMMCRILVPEMRRQGYSAGAAAAITACGSLITPIIPPGIALIIYA
LVADVSIGAMFTAGILPGLMCAALLIFAVWLNARSRGLKPSRDSWPTAQETRQTIIGA
WPALFLVLVIVGGIRLSIFTPTEAGAVATIVTLAIGLFLYREMKLADVGAAFAETARQ
TSAVLLVIMTSSALAWIFSMERAGITMAELITNLTTNPWLFLLAVNLMLLVLGMFIEG
TALMIILVPLLKPVVQQLGIDPVHFGIVLILNLSIGTLTPPVGTVLLLVTNLTGAKLA
EFLRDGWPFLLALVVALLLVTFVPAISLALV"
misc_feature complement(279783..280922)
/locus_tag="Rsph17029_0257"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature complement(279771..280913)
/locus_tag="Rsph17029_0257"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
gene complement(281061..281546)
/locus_tag="Rsph17029_0258"
/db_xref="GeneID:4898050"
CDS complement(281061..281546)
/locus_tag="Rsph17029_0258"
/note="PFAM: Tripartite ATP-independent periplasmic
transporter, DctQ component;
KEGG: rsp:RSP_1604 TRAP-T family transporter, DctQ (4TMs)
subunit"
/codon_start=1
/transl_table=11
/product="tripartite ATP-independent periplasmic
transporter DctQ"
/protein_id="YP_001042149.1"
/db_xref="GI:126461035"
/db_xref="InterPro:IPR007387"
/db_xref="GeneID:4898050"
/translation="MRLIFLAASAFGALSVAILVVMTAAAVVARYILGMPIAWTEEVS
GLLMIWIVMVGAIACEANRQHLTIDLIEGVLSPRLNRALSAVVGLASIGLLIFMSWQA
WALGQTTAFKKTQILGVSWFWLDLAVVVGAAGTAIVMAWRLIRPDAEARSDAAADRLE
H"
misc_feature complement(281175..281492)
/locus_tag="Rsph17029_0258"
/note="Tripartite ATP-independent periplasmic
transporters, DctQ component; Region: DctQ; pfam04290"
/db_xref="CDD:202961"
gene complement(281616..282590)
/locus_tag="Rsph17029_0259"
/db_xref="GeneID:4898041"
CDS complement(281616..282590)
/locus_tag="Rsph17029_0259"
/note="PFAM: TRAP dicarboxylate transporter- DctP subunit;
KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic
binding protein, DctP"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter- DctP subunit"
/protein_id="YP_001042150.1"
/db_xref="GI:126461036"
/db_xref="InterPro:IPR004682"
/db_xref="GeneID:4898041"
/translation="MKLKSLALAALLGAAAVLPAAAQEVVVRVAYENNPGEPTDLVMN
RWAELVKEASDGNVALELYPSSQLGAKQDVIEQGLLGVNVITIADVGFLTDYDPDLGI
LFAPYLTDSPEQLFKIYESDWFKEKEAALREKGVHIVISNYLYGTRQLLAKKKVEKPE
DLAGMKIRVPNNIMQIKAFELMGATPTPMPLGDVYPALTQGVIDGVENPLPVLYGGKF
HEQAKELSMISYLTNTSLWLGGEAYFSTLDPEVVTMLHETGYQAGLYSQELAAQEEAK
MLEAMKEASVTVTEPDVEAFREKTKAFYTMFPEWSEGLYEQIQAALAE"
misc_feature complement(281619..282521)
/locus_tag="Rsph17029_0259"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:31825"
misc_feature complement(281679..282503)
/locus_tag="Rsph17029_0259"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; cl15441"
/db_xref="CDD:210106"
gene complement(282614..283315)
/locus_tag="Rsph17029_0260"
/db_xref="GeneID:4898074"
CDS complement(282614..283315)
/locus_tag="Rsph17029_0260"
/note="PFAM: regulatory protein GntR, HTH; GntR domain
protein;
KEGG: rsp:RSP_1606 putative regulatory protein, GntR
family"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_001042151.1"
/db_xref="GI:126461037"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR011711"
/db_xref="GeneID:4898074"
/translation="MAGQSAVEDIRETLRREIVERMEVGDLLPNERELAERFGVARNT
VRETMIHLEAFGLIEKTRRGARVRQPDFDPIFSVFAQHFDHSGKTLGDVLNFRRIVET
GAAPLAVQGATPETLTRMAEANERMVRSLTVSASAASDYDFHMAMIEATGNTVLIRMY
RVLSVPLKFYLEVGKSRSLETEESNAQHMRIIEALRARDAAELTAALNAHFDHSGAVL
ASASARLAAQAAPAS"
misc_feature complement(282677..283306)
/locus_tag="Rsph17029_0260"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature complement(283112..283303)
/locus_tag="Rsph17029_0260"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(283121..283132,283136..283138,
283166..283168,283175..283180,283184..283198,
283220..283225,283229..283231,283295..283297,
283301..283303))
/locus_tag="Rsph17029_0260"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(282677..283042)
/locus_tag="Rsph17029_0260"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene complement(283428..284330)
/locus_tag="Rsph17029_0261"
/db_xref="GeneID:4898076"
CDS complement(283428..284330)
/locus_tag="Rsph17029_0261"
/note="PFAM: regulatory protein GntR, HTH; GntR domain
protein;
KEGG: rsp:RSP_1607 putative regulatory protein, GntR
family"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_001042152.1"
/db_xref="GI:126461038"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR011711"
/db_xref="GeneID:4898076"
/translation="MARDRNLFKMLVNRLLDRLARLPVGAELGSEGELAAELQASRTT
VRAVLTHLAEAGLLSWEGRRKVVLRAPSPSDRFDEGETRPRQELVEEPFLAWVLQGDL
PPGTLLHESDLARRLGVPVATVREFLIRFEPFGLIEKQPNRHWVLKGFTRAFAEEMFA
VREMFERHALRGLLAAAAPGGPLRADLESLRAEHEALSAGPEEELTAFPALDARFHRL
LCRAAHNRFILDFSRTISIIVHFHYRWNKRDELRRNRAALNEHLAIIKAVLAGDAPRA
AAALDAHLATAYRTLMTSVTWADA"
misc_feature complement(283536..284126)
/locus_tag="Rsph17029_0261"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature complement(283902..284081)
/locus_tag="Rsph17029_0261"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(283902..283907,283911..283916,
283944..283946,283953..283958,283962..283976,
283998..284003,284073..284075,284079..284081))
/locus_tag="Rsph17029_0261"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(283536..283862)
/locus_tag="Rsph17029_0261"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 284471..285454
/locus_tag="Rsph17029_0262"
/db_xref="GeneID:4895281"
CDS 284471..285454
/locus_tag="Rsph17029_0262"
/note="PFAM: Alcohol dehydrogenase, zinc-binding domain
protein; Alcohol dehydrogenase GroES domain protein;
KEGG: rsp:RSP_1608 putative Zn-dependent dehydrogenase"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase"
/protein_id="YP_001042153.1"
/db_xref="GI:126461039"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="GeneID:4895281"
/translation="MKALVCVEPGRFEQQDRPRPEAKPGHIRIRILQVGICGTDYHIY
GGHQPFLAYPRIMGHELSGRAMEASADGRIAEGDLVVINPYLTCGTCRACRAGKPNCC
ENIAVLGVHTDGGMCEEIVVPEGNVYGAEGLTEQSAAMVEFLAIGAHGVRRGGVRAGS
AALVVGAGPIGIGAALFAAIEGAAVTLRDTSASRLALAQKVLPEARIELVGEEAAEVY
DTVFDATGNIRAMNAGLQYVGHGGAYVLLSVVKGDLSFADPEFHKREATLFASRNALK
KDFEHVIAQIRNGRVPVEALATHATSFEDAVTNLPLWAEDRGTLIKAIIRV"
misc_feature 284471..285451
/locus_tag="Rsph17029_0262"
/note="Alcohol dehydrogenases of the MDR family; Region:
Zn_ADH7; cd08261"
/db_xref="CDD:176222"
misc_feature 284471..285445
/locus_tag="Rsph17029_0262"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature order(284579..284587,284594..284596,284894..284896,
284906..284908,284966..284983,285035..285040,
285050..285052,285095..285097,285140..285145,
285149..285151,285209..285214,285281..285289)
/locus_tag="Rsph17029_0262"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:176222"
misc_feature order(284579..284581,284645..284650,284894..284896)
/locus_tag="Rsph17029_0262"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176222"
misc_feature order(284732..284734,284741..284743,284750..284752,
284774..284776)
/locus_tag="Rsph17029_0262"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176222"
gene 285447..286547
/locus_tag="Rsph17029_0263"
/db_xref="GeneID:4895257"
CDS 285447..286547
/locus_tag="Rsph17029_0263"
/note="PFAM: Mannitol dehydrogenase, C-terminal domain;
KEGG: rsp:RSP_1609 putative altronate dehydrogenase"
/codon_start=1
/transl_table=11
/product="mannitol dehydrogenase domain-containing
protein"
/protein_id="YP_001042154.1"
/db_xref="GI:126461040"
/db_xref="InterPro:IPR000669"
/db_xref="InterPro:IPR013118"
/db_xref="GeneID:4895257"
/translation="MSDIRTPVLQFGTSRFLQAHADLFFSEAAEPRAVTVVQSSGDPA
RAARLGALAAPEGFPVVIRGLTDGVASETETRVTSVKRTLSTATDWSALTAIFCSEVE
LVISNTGDAGYQPGPADFDADFSQEMSFPAKLFQLLAARFAAGARPLTIMPMELVPEN
GRVLRDRLLAIGTGNRAPAALMDWIAGLPFANSLVDRIVSEPLEPAGAVAEPYALWAI
ERAPRIAAPCAHPAVQLVDDLEEIERLKLHVLNLGHTSLVDFWKRRGGAPDALVRELM
DGPEGRALLELYETEVLPGFAHKGRGDEARAYLEVTLDRFRNPFLDHRIADIAQNHPQ
KAERRIGAFLDWVGRSGPDMPDLHAILKRARE"
misc_feature <285639..285917
/locus_tag="Rsph17029_0263"
/note="Mannitol dehydrogenase Rossmann domain; Region:
Mannitol_dh; pfam01232"
/db_xref="CDD:144722"
misc_feature 286014..>286502
/locus_tag="Rsph17029_0263"
/note="Mannitol dehydrogenase C-terminal domain; Region:
Mannitol_dh_C; pfam08125"
/db_xref="CDD:149275"
gene 286544..288046
/locus_tag="Rsph17029_0264"
/db_xref="GeneID:4896561"
CDS 286544..288046
/locus_tag="Rsph17029_0264"
/EC_number="4.2.1.7"
/note="PFAM: D-galactarate dehydratase/Altronate hydrolase
domain protein; SAF domain;
KEGG: rsp:RSP_1610 altronate hydrolase"
/codon_start=1
/transl_table=11
/product="altronate dehydratase"
/protein_id="YP_001042155.1"
/db_xref="GI:126461041"
/db_xref="InterPro:IPR007392"
/db_xref="InterPro:IPR013974"
/db_xref="GeneID:4896561"
/translation="MTASRPAFMHLSPADTVGIALRALSAGEEALGVTLAADVPLGHK
FAVTAMPAGAAVVKYGQVMGVATADIAPGDHVHSHNCAMSDSHSDRSDAKGTLHAAPA
RQTFEGYLRPDGRVGTRNYIGIMASVNCSSTVCNAIADAANRTLLPRFPGIDGFAPIV
HDQGCGMASAGEGFDALVRVLKGYRDHPNFGGVLIVGLGCEVNQLTLYKRTDWTEERI
GIFNIQDVGGSASAVRRALELLEPICAAANEDRRSAQPVSKLVLGMQCGGSDGFSGIT
ANPALGVASDMLVAAGGTSILSETPEIYGAEHLLIARADAETGRKIEGMIDWWRDYAA
KNGASLDNNPSPGNKRGGLTTILEKSLGAVAKGGLSPLSGAFAYAEPIRIPGFVYMDS
PGYDPVAATGQVASGANLIAFTTGRGSCFGAKPAPSIKLTSNSDLARRMPEDMDIDCG
VVIEEGVSLEEMGRRIYDLLLDTASGKKSKSEEFGYGDNEFVPWKIGATL"
misc_feature 286565..286789
/locus_tag="Rsph17029_0264"
/note="Domains similar to fish antifreeze type III
protein; Region: SAF_AH_GD; cd11613"
/db_xref="CDD:212158"
misc_feature 286844..288043
/locus_tag="Rsph17029_0264"
/note="Altronate dehydratase [Carbohydrate transport and
metabolism]; Region: UxaA; COG2721"
/db_xref="CDD:32614"
misc_feature 286850..288043
/locus_tag="Rsph17029_0264"
/note="D-galactarate dehydratase / Altronate hydrolase, C
terminus; Region: GD_AH_C; pfam04295"
/db_xref="CDD:190935"
gene 288123..289916
/locus_tag="Rsph17029_0265"
/db_xref="GeneID:4896774"
CDS 288123..289916
/locus_tag="Rsph17029_0265"
/note="PFAM: ATP-binding region, ATPase domain protein
domain protein; histidine kinase A domain protein domain
protein;
KEGG: rsp:RSP_1611 sensor histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_001042156.1"
/db_xref="GI:126461042"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4896774"
/translation="MAHPASHPVRRSPGSRLAGILLLAATLALSLATYQGVRYASLAG
LDTELQDRLTVARHAVVSEIERFRYLPGLVGQDARVTGLLEGQASAEAANGYLRRVRD
LSGVDEIYVIDPSGTTRAASNWNEPGSFLGQNYGFRPYFRRALAEGEARYYAVGVTTG
KPGYFLASRLGPADRPLGVAVAKVDLAGLQSTWVRAGEAVALADPLGVVFLAGPQGWL
YRPLAPLDPQSRALLRAERRYAGLAVDEAQPLGPEMATDAGLALRVADAAIAPDDWRL
LVGLPTAPALATARLSALIVALAGLLASAGLLALHERRQLLRERLNQHALLERAVAER
TEALAHEIEERRRAEHELRETHEHLVHAAKLAVLGRMSSTIVHEVSQPLSALEATLAA
AELHLGRENPERALRSVRSGRDLLLRMQKMVKALKSFGSRQRLDPPEPVDMGTVLAAA
AEVLAPRLRELGVALDLPPAEVLPPVRGHAVRLEQVATNLILNAAEATASGGGRDPVE
VRLEPLAEGLRLTIADRGPGIPEALREKILEPFFSTRTTGLGLGLSIVRTMLEQMAGS
LSFAERPGGGTLTQVDLALYEPGREALRRRA"
misc_feature 289431..289859
/locus_tag="Rsph17029_0265"
/note="Histidine kinase-like ATPase domain; Region:
HATPase_c_2; pfam13581"
/db_xref="CDD:205759"
misc_feature 289569..289871
/locus_tag="Rsph17029_0265"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(289587..289589,289599..289601,289608..289610,
289686..289688,289692..289694,289698..289700,
289704..289709,289770..289781,289827..289829,
289833..289835,289848..289853,289857..289859)
/locus_tag="Rsph17029_0265"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 289599..289601
/locus_tag="Rsph17029_0265"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(289698..289700,289704..289706,289770..289772,
289776..289778)
/locus_tag="Rsph17029_0265"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 289913..291232
/locus_tag="Rsph17029_0266"
/db_xref="GeneID:4895844"
CDS 289913..291232
/locus_tag="Rsph17029_0266"
/note="PFAM: response regulator receiver; sigma-54 factor,
interaction domain-containing protein; helix-turn-helix,
Fis-type;
SMART: AAA ATPase;
KEGG: rsp:RSP_1612 sigma-54 dependent transcriptional
regulator"
/codon_start=1
/transl_table=11
/product="two component, sigma54 specific, Fis family
transcriptional regulator"
/protein_id="YP_001042157.1"
/db_xref="GI:126461043"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4895844"
/translation="MTRGSIAFIDDEPQLCAAAADWLEASGFEVETFTDAGLALGRIE
PARCDCVVTDLRMPGLDGQEVLARLRAADPDLPVILLSGHGDVPVAVEAMRMGAHDFL
EKPYGAEHLVEVLDRAVELRRVRREARTSRRSDLASARIEGRLVGASPAIAALRRTVQ
DLSDVAVDLLIRGETGSGKEELARTFHDFSRRARRPFVAIHCAGLPEAQFEAELFGHE
RGYLAGTAAARIGKLEHASGGTVFFNEIEAMPLSLQSRLLRAMQERGVERLGSNALRP
VDLRIMAATRVDLLAEVAAGRFRADLYYRLSPVTLDLPPLRERSEDIPLLFLRFAEEA
AARFGRPVPALREADLRALRGESWPGNVGELKAAAERAVLGMRPPAITAEPETLPLPE
RMARIEAGLIAEALEECGGSSALAADRLGIPRRTLNEKIARYGLRAS"
misc_feature 289913..291229
/locus_tag="Rsph17029_0266"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature 289937..290242
/locus_tag="Rsph17029_0266"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(289940..289945,290072..290074,290096..290098,
290156..290158,290213..290215,290222..290227)
/locus_tag="Rsph17029_0266"
/note="active site"
/db_xref="CDD:29071"
misc_feature 290072..290074
/locus_tag="Rsph17029_0266"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(290081..290086,290090..290098)
/locus_tag="Rsph17029_0266"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 290222..290230
/locus_tag="Rsph17029_0266"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 290348..290833
/locus_tag="Rsph17029_0266"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 290429..290452
/locus_tag="Rsph17029_0266"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(290432..290455,290642..290644,290783..290785)
/locus_tag="Rsph17029_0266"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 290630..290647
/locus_tag="Rsph17029_0266"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 290825..290827
/locus_tag="Rsph17029_0266"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature <291137..291214
/locus_tag="Rsph17029_0266"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 291443..292396
/locus_tag="Rsph17029_0267"
/db_xref="GeneID:4895802"
CDS 291443..292396
/locus_tag="Rsph17029_0267"
/note="TIGRFAM: TRAP transporter solute receptor, TAXI
family;
KEGG: rsp:RSP_1613 TRAP-T family transporter, DctP
subunit"
/codon_start=1
/transl_table=11
/product="TRAP transporter solute receptor TAXI family
protein"
/protein_id="YP_001042158.1"
/db_xref="GI:126461044"
/db_xref="InterPro:IPR011852"
/db_xref="GeneID:4895802"
/translation="MFRRTTLSAAAAAAVLSLQPQVAAAQEFINVLTGGTSGVYYPLG
VGLSEIYAENIEGARTQVQATKASVENLNLLAQRKGELAFALGDSVTLAWEGNEEAGF
PRPLKNLRAIAAIYPNYIQIVADAASGVTTLEDLKGKTLSVGAPASGTELNARAIFGA
AGMSYEDLAKVEYLPYAESAELIKNRQLQATLQSSGLGVAFIKDLSSTHDINLVSIPA
EVVEKIGAPYQPAVIPAGTYSGQDADVPTAAVGNLLVTHEDVSEETAYQMTKLMFENL
DRLKSAHAAAGNIKPETAIEALPIPLHPGAEKYYREIGLIQ"
misc_feature 291521..292384
/locus_tag="Rsph17029_0267"
/note="TRAP transporter solute receptor, TAXI family;
Region: TRAP_TAXI; TIGR02122"
/db_xref="CDD:162713"
misc_feature 291524..292387
/locus_tag="Rsph17029_0267"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:32505"
gene 292500..293594
/locus_tag="Rsph17029_0268"
/db_xref="GeneID:4895228"
CDS 292500..293594
/locus_tag="Rsph17029_0268"
/note="TIGRFAM: TRAP transporter, 4TM/12TM fusion protein;
PFAM: TRAP C4-dicarboxylate transport system permease DctM
subunit;
KEGG: rsp:RSP_1614 TRAP-T family transporter with fused
DctQ/DctM subunits"
/codon_start=1
/transl_table=11
/product="TRAP transporter, 4TM/12TM fusion protein"
/protein_id="YP_001042159.1"
/db_xref="GI:126461045"
/db_xref="InterPro:IPR010656"
/db_xref="InterPro:IPR011853"
/db_xref="GeneID:4895228"
/translation="MSAPSAAPGPASSAVHAPDVHEEVTEGLPPGFGPGIMGKVAFWI
AVAFSLFQLWTAGYGTLPSQVVRAMHVGFLLLLGFGLVGNLLARTAVTRAIFWGLGLI
GFGTGIYNWVLYEELIRRTGFLTHADLVVGTVLVVLVFEASRRLMGWPLAIIAGLFLA
YCFLGQHMPPPFIHRGYDFEQIVEHFAFGTEGIYGTPIYVSSAYIFIFVVFAAFLERA
GMLNLFNDFALGLVGGVRGGPAQVAVLSSALMGTISGSGVANVVASGQFTIPMMKRFG
FKPAFAGGVEATASMGGQIMPPVMGAVAFIMAETLNVPYAAVVQAAILPAVLYFGVVF
WMVWLQAGRDGLRGLPRSELPNPWHAVRDQ"
misc_feature 292611..>293591
/locus_tag="Rsph17029_0268"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
misc_feature 292917..>293588
/locus_tag="Rsph17029_0268"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
gene 293667..294617
/locus_tag="Rsph17029_0269"
/db_xref="GeneID:4895609"
CDS 293667..294617
/locus_tag="Rsph17029_0269"
/note="PFAM: TRAP C4-dicarboxylate transport system
permease DctM subunit;
KEGG: rsp:RSP_1614 TRAP-T family transporter with fused
DctQ/DctM subunits"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter subunit DctM"
/protein_id="YP_001042160.1"
/db_xref="GI:126461046"
/db_xref="InterPro:IPR010656"
/db_xref="GeneID:4895609"
/translation="MGLALVAVLILGTPLAAMIGPMAFRLVFWVALGLASAAFLKLGV
NFLVLVIGLLVLACALFKGARPTIGILRDALAQGARNALPVGIACAIVGIVIGTLTLT
GIASTFIGAIIAIGRDNLFLSLVLTMITCLVLGMGIPTIPNYIITSSLAGPALLDLGV
PLLVSHMFVFYFGIMADLTPPVALACFAAGPIAKAPGLKISLQAVRLAAAGFVIPFMA
VYTPSLMLQDGGAIAETWGYPVEVVYIFLKAVLAIGLWGVAVVGQLFGRATMLERALA
LAAGVSLILALPATDEVGFALAVATVLLHWLRVRRAARAA"
misc_feature <293823..294599
/locus_tag="Rsph17029_0269"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
gene 294614..294982
/locus_tag="Rsph17029_0270"
/db_xref="GeneID:4895705"
CDS 294614..294982
/locus_tag="Rsph17029_0270"
/note="KEGG: rsp:RSP_1615 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042161.1"
/db_xref="GI:126461047"
/db_xref="GeneID:4895705"
/translation="MSLCVVAGAAVLSLAASSFTLSWTHSVEHVEWWERWEVTEAGLR
PVEARIQGSGAGMELPPDAWREADGWHYVPRLQPQREVRLAASGMTGGGWRLCAAGRC
HDLGATATEGIRLWQSADCG"
misc_feature 294680..294934
/locus_tag="Rsph17029_0270"
/note="Domain of unknown function (DUF1850); Region:
DUF1850; pfam08905"
/db_xref="CDD:149843"
gene complement(295290..295711)
/locus_tag="Rsph17029_0271"
/pseudo
/db_xref="GeneID:4895287"
gene complement(295859..295948)
/locus_tag="Rsph17029_R0009"
/note="tRNA-Ser2"
/db_xref="GeneID:4895657"
tRNA complement(295859..295948)
/locus_tag="Rsph17029_R0009"
/product="tRNA-Ser"
/db_xref="GeneID:4895657"
gene 296073..296789
/locus_tag="Rsph17029_0272"
/db_xref="GeneID:4896940"
CDS 296073..296789
/locus_tag="Rsph17029_0272"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042162.1"
/db_xref="GI:126461048"
/db_xref="GeneID:4896940"
/translation="MQNPCSLFTACSATSAGARIAMAEDLAKQLRDIAVNGDSLFSRR
YIRTLERSASRLDALEARLSALAEAEREMRSLEKIEAKFALLKNACDLLSQEIAAARG
SERSTSRGLPTKWSDCWAVFLRERCSCTGRDEDRLPSTALISAFREWLLQRGEGDCGP
VTASKALAALVPIWRCAETGRSLDRHKAGTTYYRGLAFKPASTSDDGASPRTPAAVNA
AEGTPSRVRRRRKIGNEAQA"
misc_feature <296091..>296180
/locus_tag="Rsph17029_0272"
/note="Arginase-like and histone-like hydrolases; Region:
Arginase_HDAC; cl17011"
/db_xref="CDD:213142"
gene 297607..297867
/locus_tag="Rsph17029_0273"
/db_xref="GeneID:4897815"
CDS 297607..297867
/locus_tag="Rsph17029_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042163.1"
/db_xref="GI:126461049"
/db_xref="GeneID:4897815"
/translation="MGYAERPVRRKAADLPELDRFRFDEMVNGDRKVWGLPAIAQVLG
CGVDKARRLANDPSTGAPISKKGGQYFALRNRLLAWLVEGDQ"
gene 297943..299121
/locus_tag="Rsph17029_0274"
/db_xref="GeneID:4896380"
CDS 297943..299121
/locus_tag="Rsph17029_0274"
/note="TIGRFAM: phage portal protein, HK97 family;
PFAM: phage portal protein;
KEGG: nwi:Nwi_1628 phage portal protein, HK97"
/codon_start=1
/transl_table=11
/product="HK97 family phage portal protein"
/protein_id="YP_001042164.1"
/db_xref="GI:126461050"
/db_xref="InterPro:IPR006427"
/db_xref="InterPro:IPR006944"
/db_xref="GeneID:4896380"
/translation="MKLWPLTRKSLATPSEDLSAIFGVTPTISGASVTPLEALKVPAV
SAAVRTISEAAATLDVKVVEIAANGRETDTPAHPILPLLRDRANDWTSGSELIRDLVI
DALLTDIGALAWVNRIDGRPVEVIHYRRGVMAVEFDQATGEPRYSLNSTPLRSSDVIH
LREPFGRCPVTLAREAIAAAIVMERHAARLFGRGARPSGVLSFPKGMGDEAVKKARIA
WRSTHEGQDAGGATAILYDGATFQPLTLASTDAQFLENRKFQITEIARAFNIPAPMIG
DLERATWGNAEQKAKEFLSYCLEPRLKALEGALGRALLTEEERGRFAIRFDRDDISRA
DLATRSTTINSLITSQVLNPNEGRAWLGMEPRQGGDEFRNPNITAASEPPQQEPPNAE
"
misc_feature 297979..299061
/locus_tag="Rsph17029_0274"
/note="Phage-related protein [Function unknown]; Region:
COG4695; cl01923"
/db_xref="CDD:194210"
misc_feature 298027..299028
/locus_tag="Rsph17029_0274"
/note="Phage portal protein; Region: Phage_portal;
pfam04860"
/db_xref="CDD:203108"
gene 299111..299506
/locus_tag="Rsph17029_0275"
/db_xref="GeneID:4896310"
CDS 299111..299506
/locus_tag="Rsph17029_0275"
/note="KEGG: nwi:Nwi_1627 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042165.1"
/db_xref="GI:126461051"
/db_xref="GeneID:4896310"
/translation="MLNDLSAILADAEDQERGVWFDLLDPVTGTATGMRVRVAGPDSR
TQAKARLALADELAEAADMEGRVSAEARERARVNSLARCVLGWEITQDGELVPFTHAN
VVRLLRAATWVEAQIDAYAADRRAHRGGR"
gene 299506..300012
/locus_tag="Rsph17029_0276"
/db_xref="GeneID:4896959"
CDS 299506..300012
/locus_tag="Rsph17029_0276"
/note="TIGRFAM: phage prohead protease, HK97 family;
PFAM: peptidase U35, phage prohead HK97;
KEGG: nha:Nham_2490 peptidase U35, phage prohead HK97"
/codon_start=1
/transl_table=11
/product="HK97 family phage prohead protease"
/protein_id="YP_001042166.1"
/db_xref="GI:126461052"
/db_xref="InterPro:IPR006433"
/db_xref="GeneID:4896959"
/translation="MERAFLETKILADAAGAISGVAWKFATADRIGDMVEKGAFAGVS
LPLPMLFGHDMSDPIGVWDAASEKADGLHLSGRLLVDELPRAREVRALVQAGAVRGIS
IGFVTKKAAPRAGGGRTIKALELVEASLVVVPMHPGARVTSAKDAVSALRLAEALQRA
TAQLAARK"
misc_feature 299521..299940
/locus_tag="Rsph17029_0276"
/note="Caudovirus prohead protease; Region: Peptidase_U35;
pfam04586"
/db_xref="CDD:113360"
gene 300012..301169
/locus_tag="Rsph17029_0277"
/db_xref="GeneID:4896429"
CDS 300012..301169
/locus_tag="Rsph17029_0277"
/note="TIGRFAM: phage major capsid protein, HK97 family;
PFAM: phage major capsid protein, HK97;
KEGG: nwi:Nwi_1625 phage major capsid protein, HK97"
/codon_start=1
/transl_table=11
/product="HK97 family phage major capsid protein"
/protein_id="YP_001042167.1"
/db_xref="GI:126461053"
/db_xref="InterPro:IPR006444"
/db_xref="GeneID:4896429"
/translation="MRHMTKDQLLGSTKLDRKGEEDDPAGIVTKALEDLSKTLNERIG
DLEKKADTSPLVARLDKLEAKVNRPGTTEPKPEAEVERKAFGAYLRSGPAAPAEELKA
LTVSSDPQGGYLAPAEMSTEFIRDLVEFSPVRGVAAIRGTAAPSVIYPTRTGITNAKW
KGETQAQEASEPGFGQAEVVVKEVNTYVDISNQLLADSAGQAEAEVRLALAEDFGQKE
GLAFVSGDGVLAPEGFMNAAGISYTANGHATDLKADALITMLYAIPATHRNRGAWAMN
GTTLGVLRKLKDGQGNFLWQPSYQAGQPETILGRPVVEMVDMPDLESGSFPIAYADWS
GYRIVDRTSLSILVNPYIKATEGLTRIHATRRVGGRVLQPAKFRKLKMATS"
misc_feature 300063..301157
/locus_tag="Rsph17029_0277"
/note="phage major capsid protein, HK97 family; Region:
major_cap_HK97; TIGR01554"
/db_xref="CDD:200117"
misc_feature 300342..301157
/locus_tag="Rsph17029_0277"
/note="Phage capsid family; Region: Phage_capsid;
pfam05065"
/db_xref="CDD:147312"
gene 301182..301559
/locus_tag="Rsph17029_0278"
/db_xref="GeneID:4897995"
CDS 301182..301559
/locus_tag="Rsph17029_0278"
/note="KEGG: nha:Nham_2488 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042168.1"
/db_xref="GI:126461054"
/db_xref="GeneID:4897995"
/translation="MRDMYSNIKAVAALAPAIQSAAANGATIDLLGVSAAAFVVNTGA
IVSSGDFGVKLQESDDGTSWGDVAAGSVKSDAPATLEASKSYRLGYTGHKRYARVALT
KAGGTSIAAGAVAILNPLDKPVA"
gene 301562..301921
/locus_tag="Rsph17029_0279"
/db_xref="GeneID:4897998"
CDS 301562..301921
/locus_tag="Rsph17029_0279"
/note="PFAM: HNH endonuclease;
SMART: HNH nuclease;
KEGG: rsp:RSP_2355 HNH nuclease / probable phage PHI-105
holin-like protein"
/codon_start=1
/transl_table=11
/product="HNH endonuclease"
/protein_id="YP_001042169.1"
/db_xref="GI:126461055"
/db_xref="InterPro:IPR002711"
/db_xref="InterPro:IPR003615"
/db_xref="GeneID:4897998"
/translation="MPGKPPRICGCGRKVPAGLRCECQAKADAERKARFDRTRPSSSA
RGYTSKWERARAEFLAAHPFCRRCGAPATVVDHVKPHRGDAALFWDRKNWQALCVNHH
SSAKQSEERRAARGQRK"
misc_feature 301718..301870
/locus_tag="Rsph17029_0279"
/note="HNH nucleases; Region: HNHc; smart00507"
/db_xref="CDD:128783"
misc_feature order(301781..301783,301787..301795,301799..301801,
301838..301843,301853..301858,301865..301867)
/locus_tag="Rsph17029_0279"
/note="active site"
/db_xref="CDD:28969"
gene 301918..302391
/locus_tag="Rsph17029_0280"
/db_xref="GeneID:4898014"
CDS 301918..302391
/locus_tag="Rsph17029_0280"
/note="KEGG: mes:Meso_1894 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042170.1"
/db_xref="GI:126461056"
/db_xref="GeneID:4898014"
/translation="MIFATNGAKCYIGGVIADPGADVTETTFASQTWTEIKEVESIGT
FGDTASEITFESVSQSRTKRLKGTRNAGSMDLVCGIDYADAGQLALIAAEKTIHDYAF
RIVFNDAPAGGTPSERLFIAKVGSAAEAMDTANAVMKLNASLWINSNIVRINAEA"
gene 302396..302824
/locus_tag="Rsph17029_0281"
/db_xref="GeneID:4897246"
CDS 302396..302824
/locus_tag="Rsph17029_0281"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042171.1"
/db_xref="GI:126461057"
/db_xref="GeneID:4897246"
/translation="MLLPTAGGRLFISALPVLSWTEVAHVEALGTVGIEWDTENANGF
SNNELGQAVRVFKTTIRPSVMQIVMGIEAADPGQLLVWQAVRSYDEYAFRLTFPGVAA
ARNWRGLVTAFREIFDTANSVIRLQADVHVASYDREATAP"
STS 302551..303778
/standard_name="GDB:305493"
/db_xref="UniSTS:156411"
gene 302821..303135
/locus_tag="Rsph17029_0282"
/db_xref="GeneID:4897686"
CDS 302821..303135
/locus_tag="Rsph17029_0282"
/note="KEGG: nwi:Nwi_1622 uncharacterized phage protein
(possible DNA packaging)"
/codon_start=1
/transl_table=11
/product="phage protein"
/protein_id="YP_001042172.1"
/db_xref="GI:126461058"
/db_xref="GeneID:4897686"
/translation="MTTAITLDELKAQLSFTDDIGATDDALLELKLKAAQNHIERLLG
YKIAETFGGAGQDPVPPSLVEAILQLAAWWYENREAAGPGAREVPFGVREIVAEYREW
SF"
misc_feature 302836..303120
/locus_tag="Rsph17029_0282"
/note="Head-Tail Connector Protein gp6 of Bacteriophage
HK97 and similar proteins; Region: gp6; cd08054"
/db_xref="CDD:153446"
misc_feature order(302845..302847,302854..302859,302863..302865,
302896..302901,302908..302913,302917..302922,
302929..302934,302941..302943,302998..303006,
303013..303015,303022..303030,303034..303042,
303046..303054,303079..303096,303100..303105,
303112..303117)
/locus_tag="Rsph17029_0282"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:153446"
gene 303135..303548
/locus_tag="Rsph17029_0283"
/db_xref="GeneID:4898071"
CDS 303135..303548
/locus_tag="Rsph17029_0283"
/note="TIGRFAM: phage protein, HK97 gp10 family;
PFAM: TP901-1 ORF40 family protein;
KEGG: nwi:Nwi_1621 phage protein, HK97, GP10"
/codon_start=1
/transl_table=11
/product="HK97 family phage protein"
/protein_id="YP_001042173.1"
/db_xref="GI:126461059"
/db_xref="InterPro:IPR010064"
/db_xref="InterPro:IPR011693"
/db_xref="GeneID:4898071"
/translation="MADDGGLGKFQRRMQAIPKAAREAVRPALVKQAEQMAATMRAIT
PKDTGDLAGSIAVTGPGEATPAYSQPGGSMMVGENQAAVTVGNSDVRYAHLVEYGTTK
NEAKPFFWPAVRLHRAKAAAAIKRAVAKAVRETGR"
misc_feature 303159..303467
/locus_tag="Rsph17029_0283"
/note="Bacteriophage protein of unknown function (DUF646);
Region: DUF646; pfam04883"
/db_xref="CDD:203112"
gene 303545..303958
/locus_tag="Rsph17029_0284"
/db_xref="GeneID:4898055"
CDS 303545..303958
/locus_tag="Rsph17029_0284"
/note="KEGG: nwi:Nwi_1620 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042174.1"
/db_xref="GI:126461060"
/db_xref="GeneID:4898055"
/translation="MSAELAVQVALRQRLALDAGVTALVPAGNILDVNQRPAPSPSII
LGESQAVDEGDSIARNRQRIYHTVHVWQKEPSLQGVKRICGEIRRAIHADRLLLAAGF
HAADARVADMRQMRDPDGLTSHGVVTVEVLVQEVA"
misc_feature 303572..303919
/locus_tag="Rsph17029_0284"
/note="Protein of unknown function (DUF3168); Region:
DUF3168; pfam11367"
/db_xref="CDD:204633"
gene 303958..304281
/locus_tag="Rsph17029_0285"
/db_xref="GeneID:4895548"
CDS 303958..304281
/locus_tag="Rsph17029_0285"
/note="PFAM: phage head-tail adaptor, putative;
KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative"
/codon_start=1
/transl_table=11
/product="phage head-tail adaptor"
/protein_id="YP_001042175.1"
/db_xref="GI:126461061"
/db_xref="InterPro:IPR006453"
/db_xref="InterPro:IPR013045"
/db_xref="GeneID:4895548"
/translation="MQAGKLARVIEIEGATFATDDFGTPIPTWSRKAILRAEIVTAEA
SEFIRGWGVSEETAIVFRTRFLDGITMSDRVSFDGQHFNIKGVVPIGRRKGLELRCVA
VDGGS"
misc_feature 303979..304257
/locus_tag="Rsph17029_0285"
/note="Phage head-tail joining protein; Region:
Phage_H_T_join; pfam05521"
/db_xref="CDD:203265"
gene 304281..304715
/locus_tag="Rsph17029_0286"
/db_xref="GeneID:4898075"
CDS 304281..304715
/locus_tag="Rsph17029_0286"
/note="TIGRFAM: phage terminase, small subunit, putative,
P27 family;
PFAM: phage terminase, small subunit, putative, P27;
KEGG: nwi:Nwi_1473 phage terminase, small subunit,
putative, P27"
/codon_start=1
/transl_table=11
/product="P27 family phage terminase small subunit"
/protein_id="YP_001042176.1"
/db_xref="GI:126461062"
/db_xref="InterPro:IPR006448"
/db_xref="GeneID:4898075"
/translation="MRGTKPHIRIEREPLGDRPPPAWLSEDAKAEWTRIVPILAERKI
LTEADLGSLENYCLAMGTVREMEREIQRCGAIQKVYKVDKDGNSCLVSMRKNPAVAIQ
SEAMNRARLLAAEIGATPVSRSRPSVDEGDDDDGLFDWAGAS"
misc_feature 304362..304664
/locus_tag="Rsph17029_0286"
/note="Phage terminase, small subunit; Region:
Terminase_4; pfam05119"
/db_xref="CDD:147344"
gene 304712..306319
/locus_tag="Rsph17029_0287"
/db_xref="GeneID:4895311"
CDS 304712..306319
/locus_tag="Rsph17029_0287"
/note="PFAM: phage Terminase;
KEGG: nwi:Nwi_1472 phage terminase"
/codon_start=1
/transl_table=11
/product="phage terminase"
/protein_id="YP_001042177.1"
/db_xref="GI:126461063"
/db_xref="InterPro:IPR005021"
/db_xref="GeneID:4895311"
/translation="MIVPGWIQDGSEIADPLGYGERAVRFLKMLKHPKNRAPGRPFQL
DPWQERIVRRIYGPRHSDGTRIVRRVVLLLPRGNRKTALCAALTLLHLIGPEREPGGL
IVSAASAHEQAMELFNEAALIVQNDQRLAKRLSVREYVSKISFKDMGTRYIAVASDGK
VQHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMIVASTSGRGQENLAWQ
TVDYAIKVQKGEIDDPATLPVIFMAEPEDDWTDEDLWRLVNPGLAHGYPDIEGFRDKA
RKAVHSPFERDSFLQFNLNRWLDQTTSPFVEMHVYDEGAHEVDLEELEMVQAPCWLGV
DLSKNEDLTCVVAAWQDGQDGYQAHPWFFCPEDNLRARGERHGVDYVSWAEEGFIIPT
PGNTVDLRAVEAHIRELCARFNVREIAFDPTYGRAMMANLTEDALPAVEFRQGWVTMA
PAVKELERAIIGRRFRHGGHPVLRWNFGNVQMHIDQAGNRSFHKGKSGNKIDGAVATA
MAVARAAAGEEQFTTSASWFTDDMWTA"
misc_feature 304769..306220
/locus_tag="Rsph17029_0287"
/note="Phage terminase-like protein, large subunit
[General function prediction only]; Region: COG4626"
/db_xref="CDD:34246"
misc_feature 304847..306220
/locus_tag="Rsph17029_0287"
/note="Phage Terminase; Region: Terminase_1; pfam03354"
/db_xref="CDD:112181"
gene 306330..308675
/locus_tag="Rsph17029_0288"
/db_xref="GeneID:4895559"
CDS 306330..308675
/locus_tag="Rsph17029_0288"
/note="KEGG: rsp:RSP_2351 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042178.1"
/db_xref="GI:126461064"
/db_xref="InterPro:IPR001734"
/db_xref="GeneID:4895559"
/translation="MAGDQERLVVLLEARVRDFEKNFQRAEQRGTRSYNRLRRDSRSA
TQAMEQDMVRSTARINQALASTSARMGTFGKAFIGGLAGGVITAAFAGISSSITDTVR
SVAQLGDEAKRAGLSAQAFQEWKFVAEQNRIGVDSLVDGFKELSLRADEFIVTGAGPA
AEAFQRLGLGASALRDGLKDPSELMLEIIRRMEGLDRAAQIRVADEIFGGTGGERFVE
LLSQGETGLRKTIARAHEAGAVLDAEMIQRAAELDRKFQELTTTAGNFFKAVMVGAAE
AAAEAIDLRARLDEIFPDRAQADALLGPGVADALAGDRDALEAHAEEVARIRQAYELL
GDRASALIPEMQQVAATLEAWGYAEASAELAAVAEETRRLVEGMRDGSITAEEFETGL
TGVTTRANAAMAALDEVDRAQFSNVIAGIGGLATALARAVGIARTLRDALPGGSVATS
DDERGGDTGNVRNAWTGTQNAPKTSPRPQRPGVDSYGDFLGAGASKAGGGGGSAPKSE
YAGQVISTREATAALEAEAAALNAAETSMQGYADVAAYASKRAELLVAAQKDGIEITP
QLAAEIDRLAKDYVKAGHGADEARERHQTFEDALNESKTTMEGAFKGLVTGALSFGDA
LSTVAAKLADMMLSQAFQGLWSGGLGDAVKGLLGGLGFSSGGYTGPGGRLEPAGIVHK
GEVVWSQNDVARAGGVAAVEAMRRGARAAAGGPSGGSAGAMGGKSEVHVEVTLSPDLE
ARILQKAEDRATQITTAGMNQVDRNIPVRIQQYQRNPDRRW"
misc_feature <306504..306956
/locus_tag="Rsph17029_0288"
/note="Phage-related minor tail protein; Region:
PhageMin_Tail; pfam10145"
/db_xref="CDD:204404"
gene 308675..309031
/locus_tag="Rsph17029_0289"
/db_xref="GeneID:4895390"
CDS 308675..309031
/locus_tag="Rsph17029_0289"
/note="KEGG: nwi:Nwi_1614 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042179.1"
/db_xref="GI:126461065"
/db_xref="GeneID:4895390"
/translation="MDPMKRLERQLCAALAEVAAGRNPPVPEAGRVLWQAFWQLSRRR
TYHAAGPNPLSWTEIEAWTRLMRTPFEPHHVRILAALDDAFLDHLDASRGGSSPAMHE
RSGHPLTPELMDALFG"
gene 310583..310933
/locus_tag="Rsph17029_0290"
/db_xref="GeneID:4896711"
CDS 310583..310933
/locus_tag="Rsph17029_0290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042180.1"
/db_xref="GI:126461066"
/db_xref="GeneID:4896711"
/translation="MQTITRRTALAVPLACAGGALAMPPAEETAIMALYRRFCALGAA
AAAHPSMDDQELDRLFYIEQGEIEDAIMAAPTTTALDLAVKMLVAYDHGQIDCLSHDR
HPLWIEVRTMVGRA"
gene 310936..311286
/locus_tag="Rsph17029_0291"
/db_xref="GeneID:4895833"
CDS 310936..311286
/locus_tag="Rsph17029_0291"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042181.1"
/db_xref="GI:126461067"
/db_xref="GeneID:4895833"
/translation="MQTITRRAALAAPLVLAATIPAAEAQPQETPVLRLFREWQALDD
VLDALPSDISEEVLESMIDDLHALEERLLDTHSQGALDIVAKASVAARFGLSSGTDHD
HLMWVEARELLGRA"
gene 311713..312777
/locus_tag="Rsph17029_0292"
/db_xref="GeneID:4895196"
CDS 311713..312777
/locus_tag="Rsph17029_0292"
/note="PFAM: phage integrase family protein;
KEGG: gox:GOX2318 prophage integrase"
/codon_start=1
/transl_table=11
/product="phage integrase family protein"
/protein_id="YP_001042182.1"
/db_xref="GI:126461068"
/db_xref="InterPro:IPR002104"
/db_xref="GeneID:4895196"
/translation="MPLKLLKRGSVYYLRGTVAGHRVYESTRIGDKRQAEIFRARREA
ELIERAGSGKALTYTFAEAALCYMQAGGEGRYLDRIIKHFGPRFRIADLDNDAVNRAS
IALYPNAAPATINRQLVTPISAVYSLAADDGKAPPRRFRRRPEPKALPRWLTPEEAER
LLAACDRRLLPLVAFLLGTGCRTGEALGLAVQHLHIETRQAHVGITKNGDGKMVSFPT
RTKRILAACGLPEAGAVFRTPKGRPYRLVNGDGQKLGGQIKGAFDAARTAAKLGEDVT
PHTLRHTFATWHYAVNKDLILLMERGGWKRADLAIGYTKLAPDDLPRRLLDHGWDMRA
QSVHGDEVSDNFGSKISVLR"
misc_feature 312181..312657
/locus_tag="Rsph17029_0292"
/note="DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain. The
tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family...; Region: INT_REC_C; cd01182"
/db_xref="CDD:29503"
misc_feature order(312256..312261,312331..312333,312541..312546,
312649..312651)
/locus_tag="Rsph17029_0292"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29503"
misc_feature order(312256..312258,312331..312333,312544..312546,
312553..312555,312622..312624,312649..312651)
/locus_tag="Rsph17029_0292"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29503"
misc_feature order(312256..312258,312544..312546,312553..312555,
312622..312624,312649..312651)
/locus_tag="Rsph17029_0292"
/note="active site"
/db_xref="CDD:29503"
misc_feature order(312256..312258,312553..312555,312649..312651)
/locus_tag="Rsph17029_0292"
/note="catalytic residues [active]"
/db_xref="CDD:29503"
gene 312856..313209
/locus_tag="Rsph17029_0293"
/pseudo
/db_xref="GeneID:4896015"
gene complement(313218..313676)
/locus_tag="Rsph17029_0294"
/db_xref="GeneID:4897024"
CDS complement(313218..313676)
/locus_tag="Rsph17029_0294"
/note="KEGG: rsp:RSP_1618 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042183.1"
/db_xref="GI:126461069"
/db_xref="GeneID:4897024"
/translation="MREAGRRQTLDPAQAPAVHERDLDRYDRRGNRRDAVLGCRLDRQ
EPGLLRQAFAPPPELGPPLVDVLPGQVMTTGDIRNPRPIHTNLRQDRPLLRIRPATSP
LDARQTLLPHHTIRHRRCQSRQLARRRTKASEGGHNRVLPIRPVLGERRA"
gene 313738..314046
/locus_tag="Rsph17029_0295"
/pseudo
/db_xref="GeneID:4895296"
gene complement(314101..314176)
/locus_tag="Rsph17029_R0010"
/note="tRNA-Arg4"
/db_xref="GeneID:4896910"
tRNA complement(314101..314176)
/locus_tag="Rsph17029_R0010"
/product="tRNA-Arg"
/db_xref="GeneID:4896910"
gene 314475..315512
/locus_tag="Rsph17029_0296"
/db_xref="GeneID:4896886"
CDS 314475..315512
/locus_tag="Rsph17029_0296"
/note="PFAM: regulatory protein, LacI; periplasmic binding
protein/LacI transcriptional regulator;
KEGG: rsp:RSP_1663 putative transcriptional regulator,
LacI family"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein/LacI transcriptional
regulator"
/protein_id="YP_001042184.1"
/db_xref="GI:126461070"
/db_xref="InterPro:IPR000843"
/db_xref="InterPro:IPR001761"
/db_xref="GeneID:4896886"
/translation="MAKEPSSALQRRPLTLRDVSDASGVSEMTVSRVLRNRGDVSGAT
RERVLAAARELGYVPNRIAGALASQRVNLVAVIIPSLSNMVFPEVLTGVSEVLEDTGL
QPVVGVTNYSPEREEKVLYEMLSWRPSGIIIAGLERSHAARAMLENAGIPIVEIMDVD
GTPVDNAVGISHRRAGRHMAEAIVAAGYRRIGFLGTMMPYDHRARKRLEGFESALIAA
GLTVEDREFYSGGSALLKGREMTETILSRSPDLDFLYYSNDLIGAGGLLWCLNHAIEV
PEKVGLAGFNGVELVQGLPCHLATMDACRLEIGRKAAEIVAGKRADGAMSGLVIELEP
KLEPGDTIRRR"
misc_feature 314517..315509
/locus_tag="Rsph17029_0296"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 314523..314678
/locus_tag="Rsph17029_0296"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(314523..314525,314547..314561,314565..314570,
314577..314579,314592..314597,314604..314606,
314643..314645,314652..314654,314661..314666,
314670..314675)
/locus_tag="Rsph17029_0296"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 314643..314672
/locus_tag="Rsph17029_0296"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 314691..315497
/locus_tag="Rsph17029_0296"
/note="Ligand-binding domain of DNA transcription
repressor GntR specific for gluconate, a member of the
LacI-GalR family of bacterial transcription regulators;
Region: PBP1_GntR; cd01575"
/db_xref="CDD:107260"
misc_feature order(314691..314693,314730..314738,314745..314750,
314754..314759,314778..314792,314796..314798,
314829..314831,314838..314840,314847..314855,
315177..315179,315261..315263,315273..315275,
315282..315287)
/locus_tag="Rsph17029_0296"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107260"
misc_feature order(314727..314732,314739..314741,314874..314876,
314943..314945,314982..314984,315093..315095,
315168..315170,315330..315332,315381..315383)
/locus_tag="Rsph17029_0296"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107260"
gene complement(315519..315971)
/locus_tag="Rsph17029_0297"
/db_xref="GeneID:4895706"
CDS complement(315519..315971)
/locus_tag="Rsph17029_0297"
/note="KEGG: rsp:RSP_1664 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042185.1"
/db_xref="GI:126461071"
/db_xref="GeneID:4895706"
/translation="MTRTPRSALLLGLAGLLPFLWSALTELRPALGDWAATTLGPRFV
GPYAGLAYGTVILSFMSGVLWGFATRTSGREAAIGYGLSVIPALWAFFFVGGGPTSAA
IYLAAGFAGLLALDWTFWSQGLAPEWWMRLRLLLTAVVLACLAVTIFA"
misc_feature complement(315582..315968)
/locus_tag="Rsph17029_0297"
/note="Protein of unknown function (DUF3429); Region:
DUF3429; pfam11911"
/db_xref="CDD:192873"
gene complement(315968..316576)
/locus_tag="Rsph17029_0298"
/db_xref="GeneID:4895298"
CDS complement(315968..316576)
/locus_tag="Rsph17029_0298"
/note="PFAM: Lysine exporter protein (LYSE/YGGA);
KEGG: rsp:RSP_1665 putative RhtB family transporter"
/codon_start=1
/transl_table=11
/product="lysine exporter protein LysE/YggA"
/protein_id="YP_001042186.1"
/db_xref="GI:126461072"
/db_xref="InterPro:IPR001123"
/db_xref="GeneID:4895298"
/translation="MSPEFLLTAFIVCAAPGIGVLYTLSATLGGGIRAGLLAVLGCTL
ATGVHLVAAMAGLAAVLHASAVLFQGLKIAGVAYLLWMAWATLQEHGGLRLEAAAPEP
AARIVRRGILLNLLNPKLPLFFMAFLPQFIPAGSPEAPRLLIELGLGFTAMTAATFLG
YVALAALSRGAVLSSPRLVTWLRRLFAASFAGLGARLAFERT"
misc_feature complement(315974..316564)
/locus_tag="Rsph17029_0298"
/note="LysE type translocator; Region: LysE; cl00565"
/db_xref="CDD:207111"
gene complement(316587..317546)
/gene="ispH"
/locus_tag="Rsph17029_0299"
/db_xref="GeneID:4897711"
CDS complement(316587..317546)
/gene="ispH"
/locus_tag="Rsph17029_0299"
/EC_number="1.17.1.2"
/note="catalyzes the conversion of
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP); functions in the nonmevalonate
isoprenoid biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-enyl diphosphate
reductase"
/protein_id="YP_001042187.1"
/db_xref="GI:126461073"
/db_xref="InterPro:IPR003451"
/db_xref="GeneID:4897711"
/translation="MTMPPLTLYLAAPRGFCAGVDRAIKIVEMALEKWGAPVYVRHEI
VHNKFVVDRLRDMGAVFVEELDEAPTDRPVIFSAHGVPKAIPAEAERRNMVYVDATCP
LVSKVHLEAERHHENGLQMIMIGHAGHPETVGTMGQLPEGEVLLVETVEDVAGLEVRD
PERLAYITQTTLSIDDTAAIVAALRERFPAIAIPRKEDICYATTNRQGAVKAIAGRID
ALLVIGAPNSSNSKRLVEVGRAAGCRVAQLVQRATDIDWEALQGATSVGVAAGASAPE
VLVDEVIAAFRARFDTTVKAVETVKERVEFKVPRILREPAETP"
misc_feature complement(316632..317531)
/gene="ispH"
/locus_tag="Rsph17029_0299"
/note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
Reviewed; Region: ispH; PRK01045"
/db_xref="CDD:179212"
misc_feature complement(316680..317528)
/gene="ispH"
/locus_tag="Rsph17029_0299"
/note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate
reductase (IPP and DMAPP forming); Region: ispH_lytB;
TIGR00216"
/db_xref="CDD:161769"
gene complement(317697..318269)
/locus_tag="Rsph17029_0300"
/db_xref="GeneID:4897855"
CDS complement(317697..318269)
/locus_tag="Rsph17029_0300"
/note="PFAM: protein of unknown function DUF88;
KEGG: rsp:RSP_1667 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042188.1"
/db_xref="GI:126461074"
/db_xref="InterPro:IPR002790"
/db_xref="GeneID:4897855"
/translation="MFYKDERLALFIDGSNLYAAAKALGFDIDYKLLRQEFMRRGKLL
RAFYYTALLENDDYSPIRPLVDWLHYNGFTMVTKPAKEYTDSQGRRKVKGNMDIELTV
DAMELAPRVDHIVLFSGDGDFRPLVESLQRQGVRVSVVSTIRSQPPMIADELRRQADN
FIELDELREVIGRPPREPRVEREEIAVEAK"
misc_feature complement(317769..318254)
/locus_tag="Rsph17029_0300"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1432"
/db_xref="CDD:31621"
misc_feature complement(317775..318254)
/locus_tag="Rsph17029_0300"
/note="LabA_like proteins; Region: LabA; cd10911"
/db_xref="CDD:199897"
misc_feature complement(order(317904..317906,317910..317912,
317916..317918,317979..317981,318222..318224,
318231..318233))
/locus_tag="Rsph17029_0300"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:199897"
gene 318459..318995
/locus_tag="Rsph17029_0301"
/db_xref="GeneID:4895284"
CDS 318459..318995
/locus_tag="Rsph17029_0301"
/note="TIGRFAM:
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase;
PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase,
HPPK;
KEGG: rsp:RSP_1668
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_001042189.1"
/db_xref="GI:126461075"
/db_xref="InterPro:IPR000550"
/db_xref="GeneID:4895284"
/translation="MPSAGRFPEGNVSEAISAVASAFQAPFRVSRLFKTPFFPAGAAP
DFVNAAMALHLTDDVDPRKILAQLHEIEADFGRSRSHRWADRTLDLDLIALDDSVRPD
ADTQERWRHLPPEEQARRTPDGLILPHPRLQDRAFVLVPLADVAPEWRHPLLGLTVRE
MLAALPEAERAAAVPLGA"
misc_feature 318480..318893
/locus_tag="Rsph17029_0301"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(318561..318566,318570..318572,318594..318596,
318600..318602,318651..318653,318663..318665,
318672..318674,318687..318689,318693..318695,
318705..318707,318714..318716,318723..318725,
318729..318734,318834..318836,318843..318848,
318861..318863,318867..318869)
/locus_tag="Rsph17029_0301"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(318651..318653,318663..318665,318672..318674,
318687..318689,318693..318695,318714..318716,
318729..318734,318834..318836,318843..318848,
318861..318863)
/locus_tag="Rsph17029_0301"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 319080..319433
/locus_tag="Rsph17029_0302"
/db_xref="GeneID:4895766"
CDS 319080..319433
/locus_tag="Rsph17029_0302"
/EC_number="2.7.7.6"
/note="Promotes RNA polymerase assembly. Latches the N-
and C-terminal regions of the beta' subunit thereby
facilitating its interaction with the beta and alpha
subunits"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_001042190.1"
/db_xref="GI:126461076"
/db_xref="InterPro:IPR003716"
/db_xref="InterPro:IPR006110"
/db_xref="GeneID:4895766"
/translation="MARVTVEDCVDKVPNRFELVMLAAHRAREIASGSSLTIDRDNDK
NPVVALREIAEETQSAESLRERMIESHQTQIEVDEPEEDQMALLMGSEVDRPVQDDMS
EEKLLRALMEAQGQN"
misc_feature 319080..319286
/locus_tag="Rsph17029_0302"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:178998"
gene 319464..321581
/locus_tag="Rsph17029_0303"
/db_xref="GeneID:4896333"
CDS 319464..321581
/locus_tag="Rsph17029_0303"
/EC_number="2.7.6.5"
/note="KEGG: rsp:RSP_1670 RelA/SpoT family protein;
TIGRFAM: RelA/SpoT family protein;
PFAM: amino acid-binding ACT domain protein; TGS domain
protein; metal-dependent phosphohydrolase, HD sub domain;
RelA/SpoT domain protein;
SMART: metal-dependent phosphohydrolase, HD region"
/codon_start=1
/transl_table=11
/product="(p)ppGpp synthetase I SpoT/RelA"
/protein_id="YP_001042191.1"
/db_xref="GI:126461077"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR004095"
/db_xref="InterPro:IPR004811"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR007685"
/db_xref="GeneID:4896333"
/translation="MIDVEDLIALVRNYNPRTNADLIRRAYAYGRQMHEGQFRHSGEP
YFTHPVAVAAILTEQRLDDATIVTALLHDTIEDTKSTYTEVARLFGEDIAELVNGVTK
LTNLELSSAQSKQAENFRKLFMAMSKDLRVILVKLADRLHNMRTIKSMRPEKQAQKAR
ETMEIFAPLAGRMGMQWMREELEDLAFRVLNPEARNSIIRRFITLQRETGDVVHKITA
DIRLELEKAQIEADVYGRAKKPYSIWRKMQEKDLAFSRLSDIYGFRVICKDVADCYRI
LGVIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHEVAEAG
VAAHWSYREGVRVHNPFAVDPARWIASLTERLDEDDHDEFMENVKLEMYTDQVFCFTP
KGDVIQLPRGATPLDFAYAIHTRIGHSTVSAKVDGIRVPLWTRLKNGQSVEIITAEGQ
RPQASWIDIVTTGRAKAAIRRSLREEDRGRFVKLGQELVRAAFDHVGRKATDKALRTA
AKMLGLSDETELLAQLGSAELTARKVVETLYPELVRSSGPEVDMQRPVVGLSDDQQFR
RAKCCQPVPGERIVGITYRGQGVVIHAIDCPALEEFEEQPSRWIDLHWHAGRHAPVHT
VTLDLTISNDAGVLGRICTLIGEQKANISDLRFTDRKPDFYRLLVDVDLCDVEHLHTL
MTALEAETDVAQISRHRDLSRKP"
misc_feature 319464..321554
/locus_tag="Rsph17029_0303"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature 319539..319988
/locus_tag="Rsph17029_0303"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
misc_feature 320103..320462
/locus_tag="Rsph17029_0303"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature order(320169..320171,320175..320177,320238..320243,
320253..320255,320337..320339,320343..320345,
320358..320360,320364..320366,320370..320372,
320382..320384,320418..320420,320424..320426,
320430..320432,320454..320459)
/locus_tag="Rsph17029_0303"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature order(320169..320171,320337..320339,320343..320345,
320358..320360,320364..320366,320370..320372,
320382..320384,320418..320420,320424..320426,
320454..320456)
/locus_tag="Rsph17029_0303"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature order(320238..320240,320418..320420)
/locus_tag="Rsph17029_0303"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
misc_feature 320622..320801
/locus_tag="Rsph17029_0303"
/note="TGS_RelA_SpoT: The RelA (SpoT) protein, also
referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during amino
acid starvation and thought to mediate the stringent
response. RelA contains a TGS domain, named after...;
Region: TGS_RelA_SpoT; cd01668"
/db_xref="CDD:133438"
misc_feature 321342..321554
/locus_tag="Rsph17029_0303"
/note="ACT domain found C-terminal of the RelA/SpoT
domains; Region: ACT_RelA-SpoT; cd04876"
/db_xref="CDD:153148"
gene 321598..322254
/locus_tag="Rsph17029_0304"
/db_xref="GeneID:4895519"
CDS 321598..322254
/locus_tag="Rsph17029_0304"
/note="KEGG: rsp:RSP_1671 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042192.1"
/db_xref="GI:126461078"
/db_xref="GeneID:4895519"
/translation="MVFKRRNPRTWRQIAQESVWPRGGWSRAAQYVKHRLTRLPDEPH
RIARGVFAGVFISFTPFFGFHLIGGALLGWILRGNILAALLATFVGNPVTMPVIALVS
VEIGHWMLGIDVPLNIVNIFKAFSDAGTELWANFLAIFSDEPARWSNLGRFFETIYLP
YLVGGILPGLAVSYGFYHLTIPVIRAYQKLRAMRVQARRARERRRAGAEADDAGAGSQ
"
misc_feature 321670..322170
/locus_tag="Rsph17029_0304"
/note="Uncharacterized protein conserved in bacteria
(DUF2062); Region: DUF2062; pfam09835"
/db_xref="CDD:204326"
gene 322291..323049
/locus_tag="Rsph17029_0305"
/db_xref="GeneID:4896643"
CDS 322291..323049
/locus_tag="Rsph17029_0305"
/note="involved in the de novo synthesis of pyridoxine
(Vitamin B6)"
/codon_start=1
/transl_table=11
/product="pyridoxine 5'-phosphate synthase"
/protein_id="YP_001042193.1"
/db_xref="GI:126461079"
/db_xref="InterPro:IPR004569"
/db_xref="GeneID:4896643"
/translation="MKPLGRLRLGVNIDHVATVRNARGTSYPDPLRAGLLAEAAGADG
ITAHLREDRRHIRDEDITALMQGLRVPLNLEMATTPEMQAIALRHKPHAVCLVPERRE
ERTTEGGIDVAGDIGRLKDFVAPLRAAGCRVSMFIGHDVRQIEASAEIGAAVVELHTG
HYCDLVAEGRTAEAARELEALREGAALAHSLGLEVHAGHGISYDTVAEIAAFPQVMEL
NIGHFLIGEAIFRGLGSAIEGMRRRMDAAREAAA"
misc_feature 322306..323001
/locus_tag="Rsph17029_0305"
/note="pyridoxine 5'-phosphate synthase; Provisional;
Region: PRK05265"
/db_xref="CDD:179983"
misc_feature order(322324..322326,322330..322335,322357..322359,
322432..322434,322438..322440,322450..322455,
322513..322515,322603..322608,322615..322617,
322696..322698,322756..322758,322885..322890,
322951..322956)
/locus_tag="Rsph17029_0305"
/note="active site"
/db_xref="CDD:58644"
misc_feature order(322324..322326,322426..322428,322501..322503,
322507..322509,322513..322515,322567..322569,
322573..322575,322690..322692,322696..322698,
322750..322752,322756..322758,322876..322878,
322885..322887,322936..322941,322945..322947)
/locus_tag="Rsph17029_0305"
/note="hydrophilic channel; other site"
/db_xref="CDD:58644"
misc_feature order(322357..322359,322777..322782)
/locus_tag="Rsph17029_0305"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:58644"
misc_feature order(322432..322434,322513..322515,322756..322758,
322885..322887)
/locus_tag="Rsph17029_0305"
/note="catalytic residues [active]"
/db_xref="CDD:58644"
misc_feature 322585..322617
/locus_tag="Rsph17029_0305"
/note="active site lid [active]"
/db_xref="CDD:58644"
gene 323081..323494
/gene="acpS"
/locus_tag="Rsph17029_0306"
/db_xref="GeneID:4896039"
CDS 323081..323494
/gene="acpS"
/locus_tag="Rsph17029_0306"
/EC_number="2.7.8.7"
/note="Catalyzes the formation of holo-ACP, which mediates
the essential transfer of acyl fatty acid intermediates
during the biosynthesis of fatty acids and lipids"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_001042194.1"
/db_xref="GI:126461080"
/db_xref="InterPro:IPR002582"
/db_xref="InterPro:IPR004568"
/db_xref="InterPro:IPR008278"
/db_xref="GeneID:4896039"
/translation="MILGIGTDLANIDRMEKTLARFGERFRNRVFTPLEQAKAERRAD
VAGTYAKRWAAKEACSKALGTGLRMGISWKDMSVANLETGQPVMRLTGWAAERLASMT
PPGHEAVVHVSLTDDHPWAQAFVVIEARPRAAPPA"
misc_feature 323081..323470
/gene="acpS"
/locus_tag="Rsph17029_0306"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene 323566..324354
/locus_tag="Rsph17029_0307"
/db_xref="GeneID:4896775"
CDS 323566..324354
/locus_tag="Rsph17029_0307"
/EC_number="3.4.21.89"
/note="KEGG: rsp:RSP_1674 type 1 signal peptidase;
TIGRFAM: signal peptidase I;
PFAM: peptidase S24, S26A and S26B"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_001042195.1"
/db_xref="GI:126461081"
/db_xref="InterPro:IPR000223"
/db_xref="InterPro:IPR006198"
/db_xref="GeneID:4896775"
/translation="MASKAKSEGGILETIKTIVYALLIAGVFRTLFFQPFWIPSGSMK
DTLLIGDFLFVNKMAYGYSQYSCPFGICPFSGRILGSEPERGDVVVFRHPVNGSDFIK
RLIGLPGDTVQMRNGVLYLNGQEVPQAPDGTFEETYEQQGPMGNLPRCENGPVGEGGI
CTKSRFTETLPGGRTHDVLNIDTNGFGDNTDVFTVPAGHYFFMGDNRDNSQDSRYGQA
VGGVGFVPAENLIGRADRIMFSSAGRSMLYFWTWRADRFFKAIE"
misc_feature 323608..324285
/locus_tag="Rsph17029_0307"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:213694"
misc_feature 323665..>323886
/locus_tag="Rsph17029_0307"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(323689..323691,323869..323871)
/locus_tag="Rsph17029_0307"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature <324163..324267
/locus_tag="Rsph17029_0307"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene 324351..325040
/locus_tag="Rsph17029_0308"
/db_xref="GeneID:4896639"
CDS 324351..325040
/locus_tag="Rsph17029_0308"
/EC_number="3.1.26.3"
/note="PFAM: ribonuclease III; double-stranded RNA binding
domain protein;
KEGG: rsp:RSP_1675 ribonuclease III"
/codon_start=1
/transl_table=11
/product="ribonuclease III"
/protein_id="YP_001042196.1"
/db_xref="GI:126461082"
/db_xref="InterPro:IPR000999"
/db_xref="InterPro:IPR001159"
/db_xref="InterPro:IPR011907"
/db_xref="GeneID:4896639"
/translation="MKLSADLKAFEGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRL
EFLGDRVLGLVMAEALLAADRAASEGQLAPRFNALVRKETCAAVAREVALGDVLKLGR
SEMMSGGRRKEALLGDALEAVIAAVYLDAGFEAARQLVLRLWGARIAQVERDARDAKT
ALQEWAQARGLPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQAAAR
ALLARMEARHD"
misc_feature 324366..324977
/locus_tag="Rsph17029_0308"
/note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
/db_xref="CDD:178863"
misc_feature 324420..324806
/locus_tag="Rsph17029_0308"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(324474..324479,324486..324491,324498..324500,
324507..324512,324519..324524,324528..324536,
324564..324566,324732..324734,324759..324761)
/locus_tag="Rsph17029_0308"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature order(324474..324476,324483..324485,324495..324497,
324702..324704,324711..324713)
/locus_tag="Rsph17029_0308"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(324483..324485,324702..324704,324711..324713)
/locus_tag="Rsph17029_0308"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature 324819..>324977
/locus_tag="Rsph17029_0308"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:28930"
misc_feature order(324819..324821,324837..324842,324969..324977)
/locus_tag="Rsph17029_0308"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:28930"
gene 325033..325947
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/db_xref="GeneID:4895460"
CDS 325033..325947
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_001042197.1"
/db_xref="GI:126461083"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005662"
/db_xref="GeneID:4895460"
/translation="MTETTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRA
RIRGVAMEGQAQIVFVDTPGLFRPRRRLDRAMVAAAWGGAADADVIVLLVEAHRGLTE
GTQAIIDAMRDRIPQGQTVALAINKIDRVKAEVLLGLAQELNGAFPFAETFMISAEKG
HGVEKLRRWLAGILPEGPWFYPEDQIADVPMRAIAAEITREKLTLRLHEELPYQLTVE
TEAWEDRPDGSTRIDQVVYVARDGHKGIVLGNKGETIKQIGQAARAEIATFLERPVHL
FLQVRVRPNWLEEPERYSEMGLDFKDGD"
misc_feature 325039..325926
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature 325045..325554
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature 325072..325095
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature order(325078..325098,325138..325140,325150..325158,
325222..325224,325408..325413,325417..325419,
325498..325503)
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature order(325117..325119,325123..325167)
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature 325156..325158
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature order(325210..325227,325285..325290)
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature 325213..325224
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature 325408..325419
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature 325498..325506
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature 325660..325893
/gene="era"
/locus_tag="Rsph17029_0309"
/gene_synonym="bex; rbaA; sdgE; yqfH"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
gene 325969..326304
/locus_tag="Rsph17029_0310"
/db_xref="GeneID:4895506"
CDS 325969..326304
/locus_tag="Rsph17029_0310"
/note="PFAM: protein of unknown function DUF1491;
KEGG: rsp:RSP_1677 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042198.1"
/db_xref="GI:126461084"
/db_xref="InterPro:IPR009964"
/db_xref="GeneID:4895506"
/translation="MSARLTADFWVRAYLTRLRLADIPAFVTARGDATAGAVLVKCAT
LDGQARAFQRSFDLMTGARAWVPLAEGPEADVDAAIARQRRFDPDLWVIELEDRQGRT
LLDEPGLSE"
misc_feature 325981..326289
/locus_tag="Rsph17029_0310"
/note="Protein of unknown function (DUF1491); Region:
DUF1491; pfam07372"
/db_xref="CDD:203625"
gene 326341..327060
/gene="recO"
/locus_tag="Rsph17029_0311"
/db_xref="GeneID:4896967"
CDS 326341..327060
/gene="recO"
/locus_tag="Rsph17029_0311"
/note="involved in DNA repair and RecFOR pathway
recombination; RecFOR proteins displace ssDNA-binding
protein and facilitate the production of RecA-coated
ssDNA"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_001042199.1"
/db_xref="GI:126461085"
/db_xref="InterPro:IPR003717"
/db_xref="GeneID:4896967"
/translation="MMEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRK
IAPILQPGAQLDLTWKARLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHVTL
PEREPHSTLWQESMALLDALDRPGWPPAYLRWEMRLLEETGFGLDLTRCAVTGSREDL
AFVSPKTGRAVSRGAAGGWADRLFPLPLALLGQGPASAEEVRQGLAITGHFLGRELAP
LLNGRPLPEARARLMELLARA"
misc_feature 326341..>326886
/gene="recO"
/locus_tag="Rsph17029_0311"
/note="DNA repair protein RecO; Reviewed; Region: recO;
PRK00085"
/db_xref="CDD:178852"
misc_feature 326341..326574
/gene="recO"
/locus_tag="Rsph17029_0311"
/note="Recombination protein O N terminal; Region: RecO_N;
pfam11967"
/db_xref="CDD:204797"
misc_feature 326620..327012
/gene="recO"
/locus_tag="Rsph17029_0311"
/note="Recombination protein O C terminal; Region: RecO_C;
pfam02565"
/db_xref="CDD:202286"
gene complement(327100..328767)
/locus_tag="Rsph17029_0312"
/db_xref="GeneID:4896571"
CDS complement(327100..328767)
/locus_tag="Rsph17029_0312"
/EC_number="1.3.99.10"
/note="PFAM: acyl-CoA dehydrogenase domain protein;
Acyl-CoA dehydrogenase, type 2, C-terminal domain;
KEGG: rsp:RSP_1679 acyl-CoA dehydrogenase"
/codon_start=1
/transl_table=11
/product="isovaleryl-CoA dehydrogenase"
/protein_id="YP_001042200.1"
/db_xref="GI:126461086"
/db_xref="InterPro:IPR006089"
/db_xref="InterPro:IPR006090"
/db_xref="InterPro:IPR006091"
/db_xref="InterPro:IPR006092"
/db_xref="InterPro:IPR013107"
/db_xref="GeneID:4896571"
/translation="MPKDGSTMTGEPLLGDLLTLASDALPEVEALFETARSALKERVT
TDGKVSSKALEEEQFAAHALSWLATYVESLRQMRAWAGRLETEGRFGEMEALILQIAF
GEYLAQIRGGIPMSQTETARVQDIGIELGHPGEAVRRLIQAGNTPAARARLVALMRDN
HGRATFGASGLDEELEMIRDQFRRFADERVAPHAHGWHMRDELIPMEIVEALAEMGVF
GLTIPEEFGGFGLSKASMVVVSEELSRGYIGVGSLGTRSEIAAELILCGGTDAQKAAW
LPKLASGEILPTAVFTEPNTGSDLGSLRTRAVKDGDEWVVNGNKTWITHAARTHVMTL
LARTDPETTDYRGLSMFLAEKMPGTDADPFPTPGMTGGEIEVLGYRGMKEYEIGFDGF
RVKGENLLGGVEGQGFKQLMQTFESARIQTAARAIGVAQNALEVGMQYAEERKQFGKA
LIEFPRVAGKLAMMAVEIMVARQLTYHSAWEKDHGQRCDLEAGMAKLLGARVAWAAAD
NALQIHGGNGFALEYQISRILCDARILNIFEGAAEIQAQVIARRLLD"
misc_feature complement(327103..328260)
/locus_tag="Rsph17029_0312"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature complement(327103..328251)
/locus_tag="Rsph17029_0312"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature complement(order(327139..327141,327145..327147,
327151..327159,327796..327798,327802..327804,
327895..327897,327901..327903,327991..327993))
/locus_tag="Rsph17029_0312"
/note="active site"
/db_xref="CDD:173838"
gene complement(329491..331089)
/locus_tag="Rsph17029_0313"
/db_xref="GeneID:4896517"
CDS complement(329491..331089)
/locus_tag="Rsph17029_0313"
/EC_number="4.1.1.49"
/note="PEP carboxykinase; PEP carboxylase; PEPCK;
catalyzes the phosphorylation and decarboxylation of
oxaloacetate to form phosphoenolpyruvate using ATP"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxykinase"
/protein_id="YP_001042201.1"
/db_xref="GI:126461087"
/db_xref="InterPro:IPR001272"
/db_xref="InterPro:IPR008210"
/db_xref="GeneID:4896517"
/translation="MNFGRVNPAQTLDAQGITGLGEVHYNLIEPALVEAAVTRGEGRL
GRGGAFLCSTGAFTGRSPKDKFVVRTPSVEDTIWWENNAPMDPAAFDRLHADMLEHMK
GRTYFVQDLFAGADPELRLDVRMVTELAWHGLFIRHMLRRPERAELDSFVPDWTVINC
PSFKADPERHGCRTDTVIVLNFERKLILIANTEYAGENKKSVFTLLNYILPGKGVMAM
HCSANHALGDTDDAAVFFGLSGTGKTTLSADPSRTLIGDDEHGWSDRGTFNFEGGCYA
KTINLSAEAEPEIYATTSKFATVVENMVYDEETLELDFNDDSLTANTRCAYPLDYISN
ASESGLGGHPKNVIMLTCDAFGVLPPIARLTPAQAMYHFLSGFTSKVAGTERGVTEPQ
PTFSTCFGAPFMPRRPEVYGKLLQEKIAKHGATCWLVNTGWTGGAYGTGKRMPIKATR
ALLTAALDGSLSGVQFRRDPNFGFEVPVDLHGVDAKLLDPRSTWADPAAYDQQAKKLV
EMFANNFAQYVPFIDADVKAAAIG"
misc_feature complement(329629..331035)
/locus_tag="Rsph17029_0313"
/note="Phosphoenolpyruvate carboxykinase; Region:
PEPCK_ATP; pfam01293"
/db_xref="CDD:201716"
misc_feature complement(329503..331026)
/locus_tag="Rsph17029_0313"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_ATP;
cd00484"
/db_xref="CDD:29830"
misc_feature complement(order(329743..329745,329752..329754,
329761..329763,330118..330120,330232..330234,
330259..330261,330265..330267,330316..330321,
330355..330375,330433..330435,330490..330495,
330502..330504,330508..330510,330910..330912))
/locus_tag="Rsph17029_0313"
/note="active site"
/db_xref="CDD:29830"
misc_feature complement(order(330118..330120,330265..330267,
330490..330495,330502..330504,330508..330510,
330910..330912))
/locus_tag="Rsph17029_0313"
/note="substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:29830"
misc_feature complement(order(330265..330267,330316..330321,
330358..330360,330433..330435,330490..330492))
/locus_tag="Rsph17029_0313"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29830"
misc_feature complement(order(329743..329745,329761..329763,
330232..330234,330355..330375))
/locus_tag="Rsph17029_0313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29830"
gene 331428..332129
/locus_tag="Rsph17029_0314"
/db_xref="GeneID:4895072"
CDS 331428..332129
/locus_tag="Rsph17029_0314"
/note="PFAM: response regulator receiver; transcriptional
regulator domain protein;
KEGG: rsp:RSP_1681 two-component transcriptional
regulator, winged helix family"
/codon_start=1
/transl_table=11
/product="two component transcriptional regulator"
/protein_id="YP_001042202.1"
/db_xref="GI:126461088"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:4895072"
/translation="MSRIALVDDDRNILTSVAMTLEAEGFEVETYNDGQSALEAFNKR
MPDMAVLDIKMPRMDGMDLLQRLRQKSAMPVIFLTSKDDEIDEVLGLRMGADDYVKKP
FSQRLLVERIRALLRRQEAIAGGEADAQEESRILERGNLRMDPLRHAVSWKGRDVSLT
VTEFLLLQALAQRPGFVKSRDQLMDVAYDDQVYVDDRTIDSHIKRLRKKMRAADPDFA
AIETLYGIGYRYNEE"
misc_feature 331434..332120
/locus_tag="Rsph17029_0314"
/note="proteobacterial dedicated sortase system response
regulator; Region: marine_sort_RR; TIGR03787"
/db_xref="CDD:163499"
misc_feature 331443..331775
/locus_tag="Rsph17029_0314"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(331449..331454,331581..331583,331605..331607,
331662..331664,331719..331721,331728..331733)
/locus_tag="Rsph17029_0314"
/note="active site"
/db_xref="CDD:29071"
misc_feature 331581..331583
/locus_tag="Rsph17029_0314"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(331590..331595,331599..331607)
/locus_tag="Rsph17029_0314"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 331728..331736
/locus_tag="Rsph17029_0314"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 331833..332117
/locus_tag="Rsph17029_0314"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(331905..331907,331962..331967,332019..332021,
332028..332030,332052..332057,332091..332093,
332106..332108)
/locus_tag="Rsph17029_0314"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 332152..333870
/locus_tag="Rsph17029_0315"
/db_xref="GeneID:4896303"
CDS 332152..333870
/locus_tag="Rsph17029_0315"
/note="PFAM: ATP-binding region, ATPase domain protein
domain protein; histidine kinase, HAMP region domain
protein; histidine kinase A domain protein domain protein;
KEGG: rsp:RSP_1682 two-component sensor histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_001042203.1"
/db_xref="GI:126461089"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:4896303"
/translation="MTALRIFGRSRADDGASAHRPGDVILGEDWTAPGADGEPGLQKR
RRRGFVALNRSPLARKIILFNLLALVIQVSGVLFTNPFRENLVLQRERALVSEARLVA
NVFEARLAAVPGATLDAPKGIDIPATLDAVAVDPAVDLFILDTAGVVVASDRGARQPV
PEDRRSTLITDFLNGLWDTVSKTLAWGEAPQGEIDASALARQVFSGAREGRTTINTGR
DRNGGALFSVATPILDGERVMGVVAITSAAGEIDRLVRYEREQILQMFVVALFVSIGL
SLVLASTIANPLADLAAAAELGRDRDARKMAPGRVRIPDLTARPDEIGRLSIAMRGMV
AALYDRIDANEQFAADVAHEIKNPLASLRSAVGTMRLAKREDQREQLLDVIEHDVRRL
DRLVSDISNASRLDSELVKEEEEEFDLLPTIANLGDYLGRQAAEKGVDFIADLPSEPM
RIRGLEARLAQVFVNLISNALSFCEEGDAVRVWARRRENRVLVVVEDTGPGIPEEALT
KIFGRFYSERPPGQFGNHSGLGLAISKQIVEAHGGVIWAENIRPTSADITSEPLGARF
VVGLPV"
misc_feature 332281..332517
/locus_tag="Rsph17029_0315"
/note="Sensor N-terminal transmembrane domain; Region:
Sensor_TM1; pfam13755"
/db_xref="CDD:205929"
misc_feature 332935..333162
/locus_tag="Rsph17029_0315"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature <333085..333867
/locus_tag="Rsph17029_0315"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 333172..333363
/locus_tag="Rsph17029_0315"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(333190..333192,333202..333204,333214..333216,
333223..333225,333235..333237,333244..333246,
333292..333294,333304..333306,333313..333315,
333325..333327,333334..333336,333346..333348)
/locus_tag="Rsph17029_0315"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 333208..333210
/locus_tag="Rsph17029_0315"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 333526..333825
/locus_tag="Rsph17029_0315"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(333544..333546,333556..333558,333565..333567,
333634..333636,333640..333642,333646..333648,
333652..333657,333733..333744,333790..333792,
333796..333798,333811..333816,333820..333822)
/locus_tag="Rsph17029_0315"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 333556..333558
/locus_tag="Rsph17029_0315"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(333646..333648,333652..333654,333733..333735,
333739..333741)
/locus_tag="Rsph17029_0315"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 333867..334295
/locus_tag="Rsph17029_0316"
/db_xref="GeneID:4896287"
CDS 333867..334295
/locus_tag="Rsph17029_0316"
/note="KEGG: rsp:RSP_1683 putative kinase/phosphatase"
/codon_start=1
/transl_table=11
/product="HPr kinase"
/protein_id="YP_001042204.1"
/db_xref="GI:126461090"
/db_xref="GeneID:4896287"
/translation="MTGADRTILHASCVALDGRGLLILGPSGSGKSALALELMALGAD
LVADDRTEIVGQGPDLIARCPPAIAGLIEARGLGILRAPAIHEARVTLAVELGRSETE
RLPHFHEIQVLGRPLDLVLGQEGRHFPSALLLRLRSGRVA"
misc_feature <333876..>334148
/locus_tag="Rsph17029_0316"
/note="Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction mechanisms];
Region: HprK; COG1493"
/db_xref="CDD:31682"
misc_feature 333882..>334154
/locus_tag="Rsph17029_0316"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(333888..333890,333894..333896,333945..333950,
333957..333959,333972..333974,333984..333986,
334011..334016,334020..334022,334065..334067,
334083..334085,334095..334103,334116..334118)
/locus_tag="Rsph17029_0316"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(333894..333896,333948..333950,333954..333962,
334008..334013,334083..334085,334089..334091)
/locus_tag="Rsph17029_0316"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(333966..333968,333972..333974,333984..333989,
333996..333998,334065..334067,334077..334079,
334095..334097,334101..334109,334116..334124)
/locus_tag="Rsph17029_0316"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 334317..335225
/locus_tag="Rsph17029_0317"
/db_xref="GeneID:4896210"
CDS 334317..335225
/locus_tag="Rsph17029_0317"
/note="PFAM: Uncharacterised P-loop ATPase protein
UPF0042;
KEGG: rsp:RSP_1684 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042205.1"
/db_xref="GI:126461091"
/db_xref="InterPro:IPR005337"
/db_xref="GeneID:4896210"
/translation="MVEPVQEYRLVLVTGPSGAGRTTAINALEDMGYEVIDNLPLSFV
PRLIEGPSIGRPIALGLDVRNRDFNATALIELIDRLTQDPRVALEVLYVDCSASELIR
RYNQTRRRHPLAPAETPAEGVEREIDLLAPVRVRADHLIDTSEMSPHDLKAELSRWFD
RGAATRLAVSVQSFSYKRGVPRGVDMIFDCRFLKNPYWVESLRTLDGREASVADYISS
DPRFGPFFEKLRDLVLFLLPAQLEEGKAHLSLGFGCTGGQHRSVAVAELLGNALAEAG
WPVSKRHRELERRAAAVLPTHQGEKA"
misc_feature 334323..335189
/locus_tag="Rsph17029_0317"
/note="glmZ(sRNA)-inactivating NTPase; Provisional;
Region: PRK05416"
/db_xref="CDD:180064"
misc_feature 334341..335183
/locus_tag="Rsph17029_0317"
/note="Predicted P-loop-containing kinase [General
function prediction only]; Region: COG1660"
/db_xref="CDD:31846"
gene 335222..335620
/locus_tag="Rsph17029_0318"
/db_xref="GeneID:4896708"
CDS 335222..335620
/locus_tag="Rsph17029_0318"
/note="PFAM: PTS system fructose subfamily IIA component;
KEGG: rsp:RSP_1685 PTS system, IIA component"
/codon_start=1
/transl_table=11
/product="PTS system fructose subfamily transporter
subunit IIA"
/protein_id="YP_001042206.1"
/db_xref="GI:126461092"
/db_xref="InterPro:IPR004701"
/db_xref="GeneID:4896708"
/translation="MIGIVIVAHGGLAREYLSAVEHVVGKQEAMAAIAIEDDHDRAAK
QAEISAAARSVDRGAGVVVVTDMFGGSPSNLSLPACTARDRRIIYGANLPMLIKLAKS
RELTVPEAVSLALDAGRKYINSLDLGSGME"
misc_feature 335225..335581
/locus_tag="Rsph17029_0318"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(335246..335248,335288..335293,335324..335326,
335432..335434,335522..335524)
/locus_tag="Rsph17029_0318"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(335246..335248,335417..335419,335432..335434)
/locus_tag="Rsph17029_0318"
/note="active site"
/db_xref="CDD:28890"
misc_feature 335246..335248
/locus_tag="Rsph17029_0318"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 335617..335886
/locus_tag="Rsph17029_0319"
/db_xref="GeneID:4895730"
CDS 335617..335886
/locus_tag="Rsph17029_0319"
/note="TIGRFAM: phosphocarrier, HPr family;
PFAM: phosphocarrier HPr protein;
KEGG: rsp:RSP_1686 putative phosphocarrier HPr protein"
/codon_start=1
/transl_table=11
/product="phosphotransferase system, phosphocarrier
protein HPr"
/protein_id="YP_001042207.1"
/db_xref="GI:126461093"
/db_xref="InterPro:IPR000032"
/db_xref="InterPro:IPR001020"
/db_xref="InterPro:IPR005698"
/db_xref="GeneID:4895730"
/translation="MIERELLIVNEKGLHARASAKFVEVVERHDAQAEVSKDGMVVSG
DSIMGLLMLAASRGTSIRIRTMGSEATALAEALSALVADRFGEDM"
misc_feature 335629..335817
/locus_tag="Rsph17029_0319"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 335629..335640
/locus_tag="Rsph17029_0319"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(335656..335658,335662..335667,335671..335676,
335686..335688,335695..335697,335749..335760,
335767..335772)
/locus_tag="Rsph17029_0319"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 335659..335661
/locus_tag="Rsph17029_0319"
/note="active site"
/db_xref="CDD:29444"
misc_feature 335752..335754
/locus_tag="Rsph17029_0319"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 336030..337127
/locus_tag="Rsph17029_0320"
/db_xref="GeneID:4895347"
CDS 336030..337127
/locus_tag="Rsph17029_0320"
/note="PFAM: acyltransferase 3;
KEGG: rsp:RSP_1688 possible acyltransferase"
/codon_start=1
/transl_table=11
/product="acyltransferase 3"
/protein_id="YP_001042208.1"
/db_xref="GI:126461094"
/db_xref="InterPro:IPR002656"
/db_xref="GeneID:4895347"
/translation="MQRISRVTRVYPGFDLLRILAAGGVVFSHAFLIMELTEAGEPLK
AATGTILGLYAVMIFFILSGFLVTDSALRSQGVLDFAAKRARRLLPGFLAANLIVALA
ICPLFATEGAMAFLGQPATWETLGRVLLLQDPSLTFPGRVSFFPAEGDAAWVAAVANG
VLWTIRIEITCYLVVGLLLLVGMLTRGAVLALICAAVFATLTPAFYVSDYLNCLIYLG
PSFAAGMALRLLLPEGHRADGRIAAASAAILGVLMLKMGGWREVEGLLFPLFAAYPLI
WFGQQERARLGALGRFGDPSYGMYLWGWPVQMLLRALVGPGWSGWAFAALSLPAALAA
GWLSWILVERRFLRRRPPGASYRVGTGVSPR"
misc_feature 336030..337106
/locus_tag="Rsph17029_0320"
/note="Predicted acyltransferases [Lipid metabolism];
Region: COG1835"
/db_xref="CDD:32020"
misc_feature 336060..336983
/locus_tag="Rsph17029_0320"
/note="Acyltransferase family; Region: Acyl_transf_3;
pfam01757"
/db_xref="CDD:201957"
gene complement(337094..337969)
/locus_tag="Rsph17029_0321"
/db_xref="GeneID:4896086"
CDS complement(337094..337969)
/locus_tag="Rsph17029_0321"
/EC_number="1.1.1.157"
/note="converts (S)-3-hydroxybutanoyl-CoA to
3-acetoacetyl-CoA"
/codon_start=1
/transl_table=11
/product="3-hydroxybutyryl-CoA dehydrogenase"
/protein_id="YP_001042209.1"
/db_xref="GI:126461095"
/db_xref="InterPro:IPR006108"
/db_xref="InterPro:IPR006176"
/db_xref="InterPro:IPR006180"
/db_xref="GeneID:4896086"
/translation="MEIRKVGVVGAGQMGSGIAHVFSLAGYEVLLNDISAEGLNKALS
TIERNMERQVSRGKVSAEDKAAALGRIRTTQTLTDIARSDLVIEAATERETVKQAIFE
DLVPHLLPHTILTSNTSSISITRLASRTDRPEKFMGFHFMNPVPVMQLVELIRGIATD
DPTYQALLKVVQSLGKTAASAEDFPAFIVNRILVPMINEAVYTLYEGVGSVRSIDESM
KLGANHPMGPLELADFIGLDTCLAIMNVLHDGLADTKYRPCPLLVKYVEAGWLGRKTA
RGFYDYRGETPVPTR"
misc_feature complement(337097..337969)
/locus_tag="Rsph17029_0321"
/note="3-hydroxybutyryl-CoA dehydrogenase; Validated;
Region: PRK07530"
/db_xref="CDD:181018"
misc_feature complement(337421..337957)
/locus_tag="Rsph17029_0321"
/note="3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain; Region: 3HCDH_N; pfam02737"
/db_xref="CDD:202367"
misc_feature complement(337124..337411)
/locus_tag="Rsph17029_0321"
/note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain;
Region: 3HCDH; pfam00725"
/db_xref="CDD:201415"
gene 338138..338962
/locus_tag="Rsph17029_0322"
/db_xref="GeneID:4896135"
CDS 338138..338962
/locus_tag="Rsph17029_0322"
/note="KEGG: rsp:RSP_1689 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042210.1"
/db_xref="GI:126461096"
/db_xref="GeneID:4896135"
/translation="MAFAHQGESALEYYPCRYGGSRLMFRGPRRSLDGPFCAVLGGTE
TYGKFVPQPYPALVEEATGLRLVNLACMNAGIDLYLNDPSVTQVASKATLAILQVVGA
ANLTNRLYSVHPRRNDRFLAASPVLQTIYREVDFADFAFTRHMVQTLHAVSPEKFLQV
EAELRAAWVARMRTLLGRISAPTLLLWIADHPPPEGGPLTPDLTPLLIDADMIAAVRP
HASHYLQIVTSREAQACGTDGMRFAPLDGPVAAELPGPAVHAEIAAALVPVLRELM"
misc_feature <338138..>338368
/locus_tag="Rsph17029_0322"
/note="nuclear protein UL24; Provisional; Region:
PHA03219"
/db_xref="CDD:165484"
gene complement(339012..339938)
/locus_tag="Rsph17029_0323"
/db_xref="GeneID:4896158"
CDS complement(339012..339938)
/locus_tag="Rsph17029_0323"
/note="PFAM: electron transfer flavoprotein beta-subunit;
electron transfer flavoprotein, alpha subunit;
KEGG: rsp:RSP_1690 electron transfer flavoprotein, alpha
subunit"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit alpha"
/protein_id="YP_001042211.1"
/db_xref="GI:126461097"
/db_xref="InterPro:IPR000049"
/db_xref="InterPro:IPR001308"
/db_xref="GeneID:4896158"
/translation="MAVLLIAEVTGGTLGADSTAKALTAAKALGDVTVLVAGTGVDAA
AAEAATFDGVAKVLAADDAAYGNGLAEPLADLILGLAPGYSHILAPATSAAKNVLPRV
AALLDVMVISEITAVVDADTFERPIYAGNAIQTVKSSDATKVATVRTATFEAAGKGGS
APVETISATAGSGLSSWVEDKVAASDRPELTSARIVVSGGRGLGSEENFAMIEQLADK
LGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPQLYIAVGISGAIQHLAGMKDSKIIVA
INKDEEAPIFQVADYGLVGDLFSLVPELTGKL"
misc_feature complement(339450..>339773)
/locus_tag="Rsph17029_0323"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:30170"
misc_feature complement(339123..339380)
/locus_tag="Rsph17029_0323"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene complement(339938..340699)
/locus_tag="Rsph17029_0324"
/db_xref="GeneID:4896077"
CDS complement(339938..340699)
/locus_tag="Rsph17029_0324"
/note="PFAM: electron transfer flavoprotein beta-subunit;
KEGG: rsp:RSP_1691 electron transfer flavoprotein
beta-subunit"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit beta"
/protein_id="YP_001042212.1"
/db_xref="GI:126461098"
/db_xref="InterPro:IPR000049"
/db_xref="InterPro:IPR005829"
/db_xref="GeneID:4896077"
/translation="MKVLVPVKRVIDYNVKVRVKADGSGVDLANVKMSMNPFDEIAVE
AAIRLREAGTATEVVVVSIGVKQAQETLRTALAMGADRAILVEAASDVHQDIEPLAVA
KILKGVVEAEQPGLVICGKQAIDNDMNATGQMLSALLGWSQATFASDLAIEGDAAVVT
REVDGGMQTIKVKMPTVVTVDLRMNEPRYASLPNIMKAKKKPLEEKTAADFGVDVTPR
LSVVKTSEPAGRKAGVMVGSVDELIAKLKDEAGVI"
misc_feature complement(340079..340696)
/locus_tag="Rsph17029_0324"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:30169"
misc_feature complement(order(340307..340318,340331..340336,
340340..340345,340511..340513,340583..340585,
340592..340594,340679..340684))
/locus_tag="Rsph17029_0324"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:30169"
misc_feature complement(340139..340606)
/locus_tag="Rsph17029_0324"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:201550"
gene complement(340830..341408)
/locus_tag="Rsph17029_0325"
/db_xref="GeneID:4895674"
CDS complement(340830..341408)
/locus_tag="Rsph17029_0325"
/note="TIGRFAM: ATP--cobalamin adenosyltransferase;
PFAM: cobalamin adenosyltransferase;
KEGG: rsp:RSP_1692 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ATP--cobalamin adenosyltransferase"
/protein_id="YP_001042213.1"
/db_xref="GI:126461099"
/db_xref="InterPro:IPR002779"
/db_xref="GeneID:4895674"
/translation="MVVLSRIYTRTGDAGETALGNGARVAKHSPRVAAYGSVDETNAT
VGLARLHAQGEMQEALARISNDLFDLGADLCRPEMERDHEADYTPLRIIAAQVNRLER
EIDGMNARLEPLRSFILPGGSALAAQLHLCRTVSRRAERELVELATAESVNPEALRYL
NRLSDWFFVAGRIANDDGRADVLWVPGLTREA"
misc_feature complement(340884..341390)
/locus_tag="Rsph17029_0325"
/note="Cobalamin adenosyltransferase; Region:
Cob_adeno_trans; pfam01923"
/db_xref="CDD:202048"
gene complement(341408..341617)
/locus_tag="Rsph17029_0326"
/db_xref="GeneID:4895434"
CDS complement(341408..341617)
/locus_tag="Rsph17029_0326"
/note="KEGG: rsp:RSP_6016 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042214.1"
/db_xref="GI:126461100"
/db_xref="GeneID:4895434"
/translation="MLHDPLFIVVALAVLAVLVVLMVGIGGFARGGEFNRKHANRLMR
WRIIAQAIAIALILLFMAWRQSGGF"
gene complement(341785..342600)
/locus_tag="Rsph17029_0327"
/db_xref="GeneID:4895756"
CDS complement(341785..342600)
/locus_tag="Rsph17029_0327"
/note="PFAM: short-chain dehydrogenase/reductase SDR; KR;
KEGG: rsp:RSP_1694 probable short-chain
dehydrogenase/reductase"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001042215.1"
/db_xref="GI:126461101"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:4895756"
/translation="MKSVLITGCSSGIGLDAARGLAARGWRVFATCRQEADCDRLRSE
GLESFRLDYDDPESLAAAVAETTRRTGGTLDALYNNGAFACPGAVEDLPREALRAVLE
TNVVGVHDLTRRVIPIMRRQGHGRIVNCSSVLGFVAYPWRGAYVASKFAMEGLTDVLR
IEMADTPIRVILLEPGPIASRIRENSIPHFERWIDWRASARADQYRTLLGRLYEGGED
RWQLPPSAVTERLVQALESPRPRARYRITVPSRTAWVLRRLLPTAALDRVLGR"
misc_feature complement(341794..342600)
/locus_tag="Rsph17029_0327"
/note="short chain dehydrogenase; Validated; Region:
PRK06182"
/db_xref="CDD:180448"
misc_feature complement(341851..342597)
/locus_tag="Rsph17029_0327"
/note="17beta hydroxysteroid dehydrogenase-like, classical
(c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374"
/db_xref="CDD:187632"
misc_feature complement(order(342055..342063,342067..342069,
342154..342156,342166..342168,342205..342213,
342292..342294,342352..342363,342442..342450,
342502..342504,342562..342573,342577..342579))
/locus_tag="Rsph17029_0327"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187632"
misc_feature complement(order(342154..342156,342166..342168,
342205..342207,342289..342291))
/locus_tag="Rsph17029_0327"
/note="active site"
/db_xref="CDD:187632"
misc_feature complement(order(341851..341853,341989..341991,
341998..342000,342052..342054,342070..342075,
342166..342168,342184..342186,342199..342207))
/locus_tag="Rsph17029_0327"
/note="steroid binding site; other site"
/db_xref="CDD:187632"
gene complement(342900..343460)
/locus_tag="Rsph17029_0328"
/db_xref="GeneID:4895856"
CDS complement(342900..343460)
/locus_tag="Rsph17029_0328"
/note="PFAM: SH3, type 3 domain protein;
SMART: SH3 domain protein domain protein;
KEGG: rsp:RSP_1695 hypothetical protein"
/codon_start=1
/transl_table=11
/product="SH3 type 3 domain-containing protein"
/protein_id="YP_001042216.1"
/db_xref="GI:126461102"
/db_xref="InterPro:IPR003646"
/db_xref="InterPro:IPR013247"
/db_xref="GeneID:4895856"
/translation="MLRLTLLLCCTLFAVLLIGGRDTGQMRPGLAAAAKLEPHPRPVV
TPVETASLEAARTLTVAAEAQPVTMPAPTPVALPATRYRGDRVQVLPLPPRAAETRAP
QPVLAATMVAETRQPAGEVRHVTADAVNVRSGPSTAYPVVDRVLRGDAVLVDGPQEGS
WAPIRIEGDGVAGYMAARFLAPGTAF"
misc_feature complement(342921..343082)
/locus_tag="Rsph17029_0328"
/note="Bacterial SH3 domain; Region: SH3_3; pfam08239"
/db_xref="CDD:116824"
gene 343594..345897
/locus_tag="Rsph17029_0329"
/db_xref="GeneID:4895913"
CDS 343594..345897
/locus_tag="Rsph17029_0329"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_001042217.1"
/db_xref="GI:126461103"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005742"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:4895913"
/translation="MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDAR
DGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDF
NVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLE
EPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLI
PGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQK
SKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEI
RFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIV
AFLNLDRVIDIIRYDADPKRALMAESWGRKFKRANSEKDYVGPGPGPGDLSEVQAEAI
LNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKW
TVAGARRTQFAEAGEVEEVPLEAMIEREPITVICSQMGWIRAMKGHQPLDTEAKFKDG
DGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNEAEIHDIF
VWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGDHVAVV
GENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRTRTET
ELAEWTAARAGAGKMAPRGFPRDNRFT"
misc_feature 343651..345891
/locus_tag="Rsph17029_0329"
/note="DNA topoisomerase IV subunit A; Validated; Region:
PRK05561"
/db_xref="CDD:180129"
misc_feature 343705..344949
/locus_tag="Rsph17029_0329"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(343705..343782,343795..343944,343948..344004,
344008..344079,344086..344088)
/locus_tag="Rsph17029_0329"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 343975..343977
/locus_tag="Rsph17029_0329"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(344776..344784,344791..344802,344824..344829,
344935..344949)
/locus_tag="Rsph17029_0329"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
gene 346055..346630
/locus_tag="Rsph17029_0330"
/db_xref="GeneID:4895908"
CDS 346055..346630
/locus_tag="Rsph17029_0330"
/note="KEGG: rsp:RSP_1697 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042218.1"
/db_xref="GI:126461104"
/db_xref="InterPro:IPR000437"
/db_xref="GeneID:4895908"
/translation="MILRLAALCLAALFVTACQRNDLKEPPVDLGDFALGLNIVVADH
AQKVPISREASVEEWEAVMKTAIDDRFGRYEGTKLYNLGVSIDGYALAPPGIPVVAAP
KSVIAITANIWDDAAGAKLNEKGKKMTVFESLTGGSIVGSGYTMSKDEQMEALAYNAA
KRIEGWLVAHPEWFGLPPLPPKPAPAPGKDK"
gene 346731..347906
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/db_xref="GeneID:4895847"
CDS 346731..347906
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_001042219.1"
/db_xref="GI:126461105"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004541"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:4895847"
/translation="MAKAKFERNKPHVNIGTIGHVDHGKTTLTAAITKYFGEFRAYDQ
IDGAPEERARGITISTAHVEYESDTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVN
AADGPMPQTREHILLGRQVGIPYMVVYMNKVDQVDDPELIELVEMEIRELLSSYDYPG
DDIPIIKGSALAAMNGTDKEIGEDSIRALIAAVDEYIPTPARAVDQPFLMPVEDVFSI
SGRGTVATGRIERGVVKVGEELEIVGIRPSKKTVCTGVEMFRKLLDQGEAGDNVGLLL
RGVDRDGIERGQVLCKPGSVKPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTD
VTGTVQLPEGTEMVMPGDNLKFNVELIAPIAMEEKLRFAIREGGRTVGAGVVSKIIA"
misc_feature 346731..347903
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 346761..347330
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 346785..346808
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(346788..346790,346794..346796,346806..346811,
346818..346820,346827..346832,346911..346916,
346968..346973,347040..347045,347049..347060,
347067..347069,347160..347162,347172..347174,
347250..347255)
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(346794..346811,346854..346856,347121..347126,
347130..347132,347235..347243)
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 346881..346913
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 346899..346901
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 346956..346967
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 346962..347018
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 347121..347132
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 347235..347243
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 347352..347612
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 347619..347888
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(347655..347657,347661..347669,347721..347723,
347841..347849,347877..347879)
/locus_tag="Rsph17029_0331"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 348074..348718
/locus_tag="Rsph17029_0332"
/db_xref="GeneID:4896673"
CDS 348074..348718
/locus_tag="Rsph17029_0332"
/note="KEGG: rsp:RSP_1706 putative acetyltransferase"
/codon_start=1
/transl_table=11
/product="putative acetyltransferase"
/protein_id="YP_001042220.1"
/db_xref="GI:126461106"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:4896673"
/translation="MPSPLLNAGLRHPMRFADGRANPSMVHLNRVIDHPNIRIGDFTY
ANDFDPPEDWAARLVPYLYPGAPERLEIGRYGQIAHGVRIITASANHPAGGLTTYPFA
IFDPASLALSKEALIDLPDTVIGHDVWIGHGALILPGVRLGHGVIVGAGAVVAGDVPD
YAVVAGNPARILRMRFPPEVVARLLALAWWDWPQERLAERLPALMAGDLEAAAR"
misc_feature 348179..348652
/locus_tag="Rsph17029_0332"
/note="Xenobiotic acyltransferase (XAT): The XAT class of
hexapeptide acyltransferases is composed of a large number
of microbial enzymes that catalyze the CoA-dependent
acetylation of a variety of hydroxyl-bearing acceptors
such as chloramphenicol and...; Region: LbH_XAT; cd03349"
/db_xref="CDD:100040"
misc_feature order(348197..348199,348203..348205,348302..348304,
348344..348349,348362..348364,348368..348370,
348374..348376,348452..348454,348458..348460,
348467..348469,348524..348526,348572..348574,
348596..348598)
/locus_tag="Rsph17029_0332"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100040"
misc_feature order(348203..348205,348209..348211,348341..348346,
348350..348352,348377..348382,348458..348460,
348467..348469,348518..348523,348536..348538,
348560..348562,348566..348571,348575..348577,
348587..348589)
/locus_tag="Rsph17029_0332"
/note="active site"
/db_xref="CDD:100040"
misc_feature order(348203..348205,348209..348211,348341..348343,
348377..348382)
/locus_tag="Rsph17029_0332"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100040"
misc_feature order(348344..348346,348350..348352,348428..348430,
348458..348460,348467..348469,348482..348484,
348518..348523,348536..348538,348560..348562,
348566..348571,348575..348577,348587..348589)
/locus_tag="Rsph17029_0332"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100040"
gene 348793..348868
/locus_tag="Rsph17029_R0011"
/note="tRNA-Trp1"
/db_xref="GeneID:4896707"
tRNA 348793..348868
/locus_tag="Rsph17029_R0011"
/product="tRNA-Trp"
/db_xref="GeneID:4896707"
gene 348961..349155
/gene="secE"
/locus_tag="Rsph17029_0333"
/db_xref="GeneID:4897935"
CDS 348961..349155
/gene="secE"
/locus_tag="Rsph17029_0333"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001042221.1"
/db_xref="GI:126461107"
/db_xref="InterPro:IPR001901"
/db_xref="InterPro:IPR005807"
/db_xref="GeneID:4897935"
/translation="MAKANPFTFISQVRSEVGKVAWPGRREVLLTTIMVFVMAALTAT
FFSLVDFAIRQGLSLLLNTF"
misc_feature 348961..349140
/gene="secE"
/locus_tag="Rsph17029_0333"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 349318..349851
/locus_tag="Rsph17029_0334"
/db_xref="GeneID:4896693"
CDS 349318..349851
/locus_tag="Rsph17029_0334"
/note="KEGG: rsp:RSP_1704 probable transcription
antitermination protein NusG;
TIGRFAM: transcription termination/antitermination factor
NusG;
PFAM: transcription antitermination protein NusG; KOW
domain protein;
SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese)
domain protein"
/codon_start=1
/transl_table=11
/product="NusG antitermination factor"
/protein_id="YP_001042222.1"
/db_xref="GI:126461108"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR003257"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR006645"
/db_xref="InterPro:IPR006646"
/db_xref="GeneID:4896693"
/translation="MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEE
VIEVRRGKKVTSERRFMPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSE
VNTILNRVEEGEAQPRSLIRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIF
GRATPVELEFTQVAKGA"
misc_feature 349318..349842
/locus_tag="Rsph17029_0334"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 349327..349647
/locus_tag="Rsph17029_0334"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(349336..349338,349438..349440,349498..349500,
349507..349509,349513..349515,349609..349611,
349633..349635)
/locus_tag="Rsph17029_0334"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 349690..349764
/locus_tag="Rsph17029_0334"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 349944..350396
/gene="rplK"
/locus_tag="Rsph17029_0335"
/db_xref="GeneID:4896683"
CDS 349944..350396
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001042223.1"
/db_xref="GI:126461109"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR006519"
/db_xref="GeneID:4896683"
/translation="MAKKIIGSLKLQVKAGQANPSPPVGPALGQRGLNIMAFVKEFNA
KSADLEPGTPTPVIITYYQDKSFSLELKTPPASFMLKKAAGLAPVGKRNRPKGSTKPG
REVAGSVTVAQIRKIAEAKMKDLNANDVEAAMQIILGSAKSCGIEVKG"
misc_feature 349944..350393
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 349968..350387
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(349971..349973,350031..350033,350166..350174,
350184..350186,350229..350231,350304..350306,
350319..350327,350337..350339,350346..350351,
350358..350363,350367..350375)
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(349971..349973,350115..350117,350121..350132,
350142..350144,350148..350153,350307..350312,
350319..350324)
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(350019..350021,350031..350033)
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(350247..350249,350256..350258)
/gene="rplK"
/locus_tag="Rsph17029_0335"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 350400..351098
/gene="rplA"
/locus_tag="Rsph17029_0336"
/db_xref="GeneID:4897332"
CDS 350400..351098
/gene="rplA"
/locus_tag="Rsph17029_0336"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001042224.1"
/db_xref="GI:126461110"
/db_xref="InterPro:IPR002143"
/db_xref="InterPro:IPR005878"
/db_xref="GeneID:4897332"
/translation="MAKVGKRTRSAREAFVGKDLISVEDAVALIKQAASAKFDETLEV
AMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLME
TIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGE
VQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTM
GPGVSVDLTSATSH"
misc_feature 350466..351071
/gene="rplA"
/locus_tag="Rsph17029_0336"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(350505..350513,350520..350522,350526..350528,
350532..350534,350538..350540,350901..350903,
350907..350909,350913..350915,351051..351056,
351060..351062)
/gene="rplA"
/locus_tag="Rsph17029_0336"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 351337..351852
/gene="rplJ"
/locus_tag="Rsph17029_0337"
/db_xref="GeneID:4897536"
CDS 351337..351852
/gene="rplJ"
/locus_tag="Rsph17029_0337"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001042225.1"
/db_xref="GI:126461111"
/db_xref="InterPro:IPR001790"
/db_xref="InterPro:IPR002363"
/db_xref="GeneID:4897536"
/translation="MDRAQKEKVVEELGQIFESSGVVVVAHYAGITVAQMQDLRAQMR
EVGGSVRVAKNRLAKIALAGKPSEKMGDLLTGMTVMAYSEDPVAAAKVADAYAKKNDK
FVILGGAMGDTILDPAGVKTVAAMPSREELIAQIVSCIGAPASNIAGAIGAPASNIAG
ILSTLEEREAA"
misc_feature 351340..351807
/gene="rplJ"
/locus_tag="Rsph17029_0337"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(351352..351357,351364..351366,351496..351507,
351514..351516)
/gene="rplJ"
/locus_tag="Rsph17029_0337"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(351595..351597,351664..351666,351673..351675,
351721..351723,351730..351735,351742..351747,
351751..351768,351772..351780,351787..351792,
351796..351801,351805..351807)
/gene="rplJ"
/locus_tag="Rsph17029_0337"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 351922..352299
/gene="rplL"
/locus_tag="Rsph17029_0338"
/db_xref="GeneID:4896022"
CDS 351922..352299
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001042226.1"
/db_xref="GI:126461112"
/db_xref="InterPro:IPR000206"
/db_xref="InterPro:IPR013823"
/db_xref="GeneID:4896022"
/translation="MADLNKLAEDIVGLTLLEAQELKTILKDKYGIEPAAGGAVMMAG
PAAGAAAPAEEEKTEFDVVLTDAGANKINVIKEVRAITGLGLKEAKDLVEAGGKVKEA
VAKADAEAMKKKLEEAGAKVELK"
misc_feature 351925..>352197
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(351925..351927,351964..351972,351979..351984,
351991..351993,352000..352002,352045..352047,
352054..352059,352063..352071,352093..352098,
352159..352161,352165..352170,352174..352176,
352180..352185)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(351934..351936,351943..351945,351955..351957,
351994..351996,352009..352011)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(351976..351978,351985..351990,352000..352002,
352009..352011)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(352132..352137,352144..352149,352156..352158,
352177..352182,352189..352191)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(352135..352137,352147..352149,352156..352158,
352177..352182,352189..352191)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(352135..352137,352144..352149,352156..352158)
/gene="rplL"
/locus_tag="Rsph17029_0338"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 352544..356677
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/db_xref="GeneID:4896030"
CDS 352544..356677
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001042227.1"
/db_xref="GI:126461113"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007121"
/db_xref="InterPro:IPR007641"
/db_xref="InterPro:IPR007642"
/db_xref="InterPro:IPR007644"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR010243"
/db_xref="GeneID:4896030"
/translation="MAQSYVGQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDG
PKAADGEGIQGVFQSVFPIKDFNETAVLEFVKYELEKPKYDVDECQQRDMTYAAPLKV
TLRLIVFDVDETTGARSVKDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPG
VFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYA
LGMDQEGIMDAYYETVNFKHQKNRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGE
KATPRMVKKWIDEAQITELLVPFDHIVGRYVAQDIINEETGEIWVEAGDELTMEYDRD
GEVKGGTLKLLLDQGITDIPVLDIDNVNVGPYIRNTMAADKNMGRDTALMDIYRVMRP
GEPPTVEAASNLFDTLFFDSERYDLSAVGRVKMNMRLDLGKPDTQRTLDRDDIIACIK
ALTELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDTIM
PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFE
VRDVHPTHYGRMCPIETPEGQNIGLINSLATFARVNKYGFIETPYRKVVEGAVTDDVV
YMSATEEMRHTVAQANAQLDEEGRFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVS
VAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAPFVGTGIEAVVARDSGAAIMARR
AGVIDQVDATRIVVRATEMLEPGEPGVDIYRLRKFKRSNQSSCINQRPLVKVGDVVHR
GEVVADGPCTDMGELALGRNVIVAFMPWNGYNYEDSILISERILRDDVYTSIHIEEYE
VAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPM
TPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHGVDKDERALQIEREEV
ERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGIRAGSEINEDLLSTLSRGQWW
QLALGEEADAKEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPGVMKMVKVFVAV
KRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPSRMNVGQILE
THMGWAARGLGIKIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFGDREDEDLVEM
AGRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPVTVGVK
YMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDADEE"
misc_feature 352622..>353209
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <353678..353965
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <353870..>355444
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(355028..355030,355070..355072)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(355085..355087,355196..355198,355202..355204,
355214..355222,355226..355228)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature <355817..356656
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(355856..355858,355862..355864,355868..355870,
355934..355936,355940..355942,355949..355951,
355958..355960,355973..355975,355985..355987,
356198..356200,356279..356281,356303..356311,
356315..356317,356354..356356,356363..356371,
356375..356380,356441..356449,356459..356461,
356465..356470,356474..356476,356480..356497,
356501..356518,356528..356530,356597..356599,
356609..356611,356615..356617,356621..356626,
356630..356632,356636..356647,356651..356653)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(355880..355882,356285..356287)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(355883..355885,355922..355924,356003..356008,
356012..356014,356267..356269,356318..356320)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(355883..355891,355898..355900,355904..355909,
356282..356305,356309..356311)
/gene="rpoB"
/locus_tag="Rsph17029_0339"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 356759..361006
/locus_tag="Rsph17029_0340"
/db_xref="GeneID:4896029"
CDS 356759..361006
/locus_tag="Rsph17029_0340"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001042228.1"
/db_xref="GI:126461114"
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
/db_xref="GeneID:4896029"
/translation="MNQELSTNPFNPVAPVKTFDEIKISLASPERILSWSYGEIKKPE
TINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRE
RMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQ
LMTEEEFLDAQDQYGADAFTANIGAEAIREMLSAIDLEQTAETLREELKEATGELKPK
KIIKRLKIVESFLESGNRPEWMILTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVI
NRNNRLKRLIELRAPDIIVRNEKRMLQEAVDALFDNGRRGRVITGTNKRPLKSLSDML
KGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYSRLEAKG
LSSTVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAI
QLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQD
MVLGLYYTTMERRGMKGEGMAFSSVEEVEHALAAGEVHLHATITARIKQIDEEGNEVV
KRYQTTPGRLRLGNLLPLNAKAPFELVNRLLRKKDVQNVIDTVYRYCGQKESVIFCDQ
IMGMGFREAFKAGISFGKDDMLIPDTKWPIVNEVRDQVKEFEQQYMDGLITQGEKYNK
VVDAWSKCSDKVAGEMMAEISAVRYDDAGAEKEPNSVYMMSHSGARGSPAQMKQLGGM
RGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLV
DVAQDCIVRTHDCGTENAITASAAVNEGEVVSPLAERVLGRVAAEDILVPGSDEVIVA
RGELIDERRADLVDQANVASVRIRSPLTCEAEEGVCAMCYGRDLARGTLVNIGEAVGI
IAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQEGRIEFRNPNLLENANGEQIVM
GRNMQLAIIDEAGQERATHKLTYGAKVHVKDGQTVKRATRLFEWDPYTLPIIAEKAGV
ARFVDLVSGISVREDTDEATGMTQKIVSDWRSTPKGGDLKPEIIIMNPETGDPMRNEA
GNPISYPMSVEAILSVEDGQTVRAGDVVARIPREGARTKDITGGLPRVAELFEARRPK
DHAIIAENDGYVRFGKDYKNKRRITIEPVDDTLNSVEYMVPKGKHIPVQEGDFVQKGD
YIMDGNPAPHDILRILGVEALANYMIDEVQEVYRLQGVKINDKHIEVIVRQMLQKYEI
LDSGETTLLKGEHVDKAELDEVNQKAMDHGMRPAHAEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIAHDRDQKVIDT
RRAEAESAAALAAPTDEVIDLGSEDSGLVETVENREE"
misc_feature 356807..357793
/locus_tag="Rsph17029_0340"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 356819..359308
/locus_tag="Rsph17029_0340"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 357470..358300
/locus_tag="Rsph17029_0340"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 358232..358693
/locus_tag="Rsph17029_0340"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 358778..359041
/locus_tag="Rsph17029_0340"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 359471..>359575
/locus_tag="Rsph17029_0340"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 359486..359488
/locus_tag="Rsph17029_0340"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <360386..360832
/locus_tag="Rsph17029_0340"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(360677..360679,360722..360727)
/locus_tag="Rsph17029_0340"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(360767..360769,360785..360787,360803..360805,
360812..360817,360827..360829)
/locus_tag="Rsph17029_0340"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene 361198..362124
/locus_tag="Rsph17029_0341"
/db_xref="GeneID:4897504"
CDS 361198..362124
/locus_tag="Rsph17029_0341"
/note="PFAM: protein of unknown function DUF6,
transmembrane;
KEGG: rsp:RSP_1711 possible transporter, RhaT family, DMT
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042229.1"
/db_xref="GI:126461115"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4897504"
/translation="MRLSDNLRGALAMTVAMAAFTVNDALMKAVTQTMPLFQAIALRG
LVSLPLLFLYGWAVGGLRFRIPRRDGGLLALRAGADVLSTVAYLSALMVLPLANLVAI
LQSVPLAVTLAAALVLKEPLGWRRFSAILIGFCGVLLIVRPGAEGFSLWSLVGLAAVG
CIVARDLATRRIGSDLPAATIALWTSGAVTLLGLAGSLPSGFGPVTGGEALYLGGAAV
ALMAGYVSIVLAMRGGDIAAVSPFRYTALLWAIALGWLLFGDLPDGLALLGFAVITAT
GLFTIWREARLRRLPREASVDIPPDSPYTPPT"
misc_feature 361207..362043
/locus_tag="Rsph17029_0341"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
gene 362337..362708
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/db_xref="GeneID:4895887"
CDS 362337..362708
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_001042230.1"
/db_xref="GI:126461116"
/db_xref="InterPro:IPR005679"
/db_xref="InterPro:IPR006032"
/db_xref="GeneID:4895887"
/translation="MPTIQQLIRKPREPKRVRSKSQHLESCPQKRGVCTRVYTTTPKK
PNSAMRKVAKVRLTNGFEVISYIPGEKHNLQEHSVVLIRGGRVKDLPGVRYHILRGVL
DTQGVKDRRQRRSKYGAKRPK"
misc_feature 362343..362666
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(362346..362351,362355..362360,362367..362372)
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 362346..362348
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(362370..362378,362412..362414,362418..362423,
362427..362429,362472..362477,362481..362489,
362508..362510,362532..362534,362541..362546,
362583..362588,362598..362603,362664..362666)
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(362463..362468,362598..362600)
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 362466..362471
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(362469..362486,362544..362570)
/gene="rpsL"
/locus_tag="Rsph17029_0342"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 362721..363191
/locus_tag="Rsph17029_0343"
/db_xref="GeneID:4897139"
CDS 362721..363191
/locus_tag="Rsph17029_0343"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_001042231.1"
/db_xref="GI:126461117"
/db_xref="InterPro:IPR000235"
/db_xref="InterPro:IPR005717"
/db_xref="GeneID:4897139"
/translation="MSRRHAAEKREILPDAKFGDTVLTKFMNNLMIDGKKSVAESIVY
NALDRVQTRLKREPLEAFHEALDNVKPSVEVRSRRVGGATYQVPVEVRTERREALAIR
WLITAARKRNENTMEERLAAELADACNNRGTAVKKREDTHKMADANKAFSHYRW"
misc_feature 362721..363188
/locus_tag="Rsph17029_0343"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 363216..365333
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/db_xref="GeneID:4897133"
CDS 363216..365333
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_001042232.1"
/db_xref="GI:126461118"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004540"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
/db_xref="GeneID:4897133"
/translation="MARDYPLELYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVH
DGAATMDWMEQEQERGITITSAATTTFWERTEDGKTPLTPKHRFNIIDTPGHVDFTIE
VERSLAVLDGAVCLLDANAGVEPQTETVWRQADRYKVPRIVFVNKMDKIGADFFNCVK
MIKDRTGATPAPIALPIGAEDKLEGIIDLVTMQEWVYQGEDLGASWIIKDVRDELKAE
AEEWRGKLIELAVEQDDEAMEAYLEGNEPDVPTLRKLIRKGCLAMAFVPVTAGSAFKN
KGVQPVLNSVIDYLPSPLDVPAYMGFAPGDETETRNIARSADDSQPFAALAFKIMNDP
FVGSLTFTRLYSGVLKKGDQMVNSTKGKRERVGRMMMMHAINREEIDEAFAGDIIALA
GLKETTTGDTLCDPANQVVLETMTFPEPVIEIAVEPKTKADQEKMGLALARLAAEDPS
FRVETDFESGQTIMKGMGELHLDILVDRMKREFKVEANIGAPQVAYRETISREAEIDY
THKKQTGGTGQFARVKLVITPTEPGEGYSFESKIVGGAVPKEYIPGVEKGIKSVMDSG
PLAGFPVIDFRVALIDGAFHDVDSSVLAFEIASRAAMREGLKKAGAKLLELIMKVEVV
TPEEYTGGIIGDLTSRRGMVQGQDTRGNANVINAFVPLANMFGYINTLRSMSSGRAVF
TMHFDHYDAVPQNISDEIQKKYA"
misc_feature 363216..365330
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 363249..364094
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 363264..363287
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(363267..363269,363273..363275,363285..363290,
363297..363299,363306..363311,363411..363416,
363501..363506,363573..363578,363684..363686,
363696..363698)
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(363273..363275,363279..363290,363651..363656,
363660..363662,364029..364037)
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 363354..363413
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 363399..363401
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 363489..363500
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 363495..363551
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 363651..363662
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 364029..364037
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 364182..364430
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 364701..365027
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 365067..365294
/locus_tag="Rsph17029_0344"
/gene_synonym="fusA"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 365408..366583
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/db_xref="GeneID:4895253"
CDS 365408..366583
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_001042233.1"
/db_xref="GI:126461119"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004541"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:4895253"
/translation="MAKAKFERNKPHVNIGTIGHVDHGKTTLTAAITKYFGEFRAYDQ
IDGAPEERARGITISTAHVEYESDTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVN
AADGPMPQTREHILLGRQVGIPYMVVYMNKVDQVDDPELIELVEMEIRELLSSYDYPG
DDIPIIKGSALAAMNGTDKEIGEDSIRALIAAVDEYIPTPARAVDQPFLMPVEDVFSI
SGRGTVATGRIERGVVKVGEELEIVGIRPSKKTVCTGVEMFRKLLDQGEAGDNVGLLL
RGVDRDGIERGQVLCKPGSVKPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTD
VTGTVQLPEGTEMVMPGDNLKFNVELIAPIAMEEKLRFAIREGGRTVGAGVVSKIIA"
misc_feature 365408..366580
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 365438..366007
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 365462..365485
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(365465..365467,365471..365473,365483..365488,
365495..365497,365504..365509,365588..365593,
365645..365650,365717..365722,365726..365737,
365744..365746,365837..365839,365849..365851,
365927..365932)
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(365471..365488,365531..365533,365798..365803,
365807..365809,365912..365920)
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 365558..365590
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 365576..365578
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 365633..365644
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 365639..365695
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 365798..365809
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 365912..365920
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 366029..366289
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 366296..366565
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(366332..366334,366338..366346,366398..366400,
366518..366526,366554..366556)
/locus_tag="Rsph17029_0345"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 366751..367395
/locus_tag="Rsph17029_0346"
/db_xref="GeneID:4895408"
CDS 366751..367395
/locus_tag="Rsph17029_0346"
/note="KEGG: rsp:RSP_1706 putative acetyltransferase"
/codon_start=1
/transl_table=11
/product="putative acetyltransferase"
/protein_id="YP_001042234.1"
/db_xref="GI:126461120"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:4895408"
/translation="MPSPLLNAGLRHPMRFADGRANPSMVHLNRVIDHPNIRIGDFTY
ANDFDPPEDWAARLVPYLYPGAPERLEIGRYGQIAHGVRIITASANHPAGGLTTYPFA
IFDPASLALSKEALIDLPDTVIGHDVWIGHGALILPGVRLGHGVIVGAGAVVAGDVPD
YAVVAGNPARILRMRFPPEVVARLLALAWWDWPQERLAERLPALMAGDLEAAAR"
misc_feature 366856..367329
/locus_tag="Rsph17029_0346"
/note="Xenobiotic acyltransferase (XAT): The XAT class of
hexapeptide acyltransferases is composed of a large number
of microbial enzymes that catalyze the CoA-dependent
acetylation of a variety of hydroxyl-bearing acceptors
such as chloramphenicol and...; Region: LbH_XAT; cd03349"
/db_xref="CDD:100040"
misc_feature order(366874..366876,366880..366882,366979..366981,
367021..367026,367039..367041,367045..367047,
367051..367053,367129..367131,367135..367137,
367144..367146,367201..367203,367249..367251,
367273..367275)
/locus_tag="Rsph17029_0346"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100040"
misc_feature order(366880..366882,366886..366888,367018..367023,
367027..367029,367054..367059,367135..367137,
367144..367146,367195..367200,367213..367215,
367237..367239,367243..367248,367252..367254,
367264..367266)
/locus_tag="Rsph17029_0346"
/note="active site"
/db_xref="CDD:100040"
misc_feature order(366880..366882,366886..366888,367018..367020,
367054..367059)
/locus_tag="Rsph17029_0346"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100040"
misc_feature order(367021..367023,367027..367029,367105..367107,
367135..367137,367144..367146,367159..367161,
367195..367200,367213..367215,367237..367239,
367243..367248,367252..367254,367264..367266)
/locus_tag="Rsph17029_0346"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100040"
gene 367470..367545
/locus_tag="Rsph17029_R0012"
/note="tRNA-Trp2"
/db_xref="GeneID:4895433"
tRNA 367470..367545
/locus_tag="Rsph17029_R0012"
/product="tRNA-Trp"
/db_xref="GeneID:4895433"
gene 367638..367832
/gene="secE"
/locus_tag="Rsph17029_0347"
/db_xref="GeneID:4895911"
CDS 367638..367832
/gene="secE"
/locus_tag="Rsph17029_0347"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001042235.1"
/db_xref="GI:126461121"
/db_xref="InterPro:IPR001901"
/db_xref="InterPro:IPR005807"
/db_xref="GeneID:4895911"
/translation="MAKANPFTFISQVRSEVGKVAWPGRREVLLTTIMVFVMAALTAT
FFSLVDFAIRQGLSLLLNTF"
misc_feature 367638..367817
/gene="secE"
/locus_tag="Rsph17029_0347"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 367995..368528
/locus_tag="Rsph17029_0348"
/db_xref="GeneID:4895948"
CDS 367995..368528
/locus_tag="Rsph17029_0348"
/note="KEGG: rsp:RSP_1704 probable transcription
antitermination protein NusG;
TIGRFAM: transcription termination/antitermination factor
NusG;
PFAM: transcription antitermination protein NusG; KOW
domain protein;
SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese)
domain protein"
/codon_start=1
/transl_table=11
/product="NusG antitermination factor"
/protein_id="YP_001042236.1"
/db_xref="GI:126461122"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR003257"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR006645"
/db_xref="InterPro:IPR006646"
/db_xref="GeneID:4895948"
/translation="MAKRWYSVSVLSNFEKKVAEQIRTAVADAGLEEEIDEVLVPTEE
VIEVRRGKKVTSERRFMPGYVLVHMEMSNRGYHLISSINRVTGFLGPQGKPMPMRDSE
VNTILNRVEEGEAQPRSLIRYDIGETVKVTDGPFEGFSGMVEDVDEEHSRLKVTVSIF
GRATPVELEFTQVAKGA"
misc_feature 367995..368519
/locus_tag="Rsph17029_0348"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 368004..368324
/locus_tag="Rsph17029_0348"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(368013..368015,368115..368117,368175..368177,
368184..368186,368190..368192,368286..368288,
368310..368312)
/locus_tag="Rsph17029_0348"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 368367..368441
/locus_tag="Rsph17029_0348"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 368621..369073
/gene="rplK"
/locus_tag="Rsph17029_0349"
/db_xref="GeneID:4895740"
CDS 368621..369073
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001042237.1"
/db_xref="GI:126461123"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR006519"
/db_xref="GeneID:4895740"
/translation="MAKKIIGSLKLQVKAGQANPSPPVGPALGQRGLNIMAFVKEFNA
KSADLEPGTPTPVIITYYQDKSFSLELKTPPASFMLKKAAGLAPVGKRNRPKGSTKPG
REVAGSVTVAQIRKIAEAKMKDLNANDVEAAMQIILGSAKSCGIEVKG"
misc_feature 368621..369070
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 368645..369064
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(368648..368650,368708..368710,368843..368851,
368861..368863,368906..368908,368981..368983,
368996..369004,369014..369016,369023..369028,
369035..369040,369044..369052)
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(368648..368650,368792..368794,368798..368809,
368819..368821,368825..368830,368984..368989,
368996..369001)
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(368696..368698,368708..368710)
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(368924..368926,368933..368935)
/gene="rplK"
/locus_tag="Rsph17029_0349"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 369077..369775
/gene="rplA"
/locus_tag="Rsph17029_0350"
/db_xref="GeneID:4895073"
CDS 369077..369775
/gene="rplA"
/locus_tag="Rsph17029_0350"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001042238.1"
/db_xref="GI:126461124"
/db_xref="InterPro:IPR002143"
/db_xref="InterPro:IPR005878"
/db_xref="GeneID:4895073"
/translation="MAKVGKRTRSAREAFVGKDLISVEDAVALIKQAASAKFDETLEV
AMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLME
TIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGE
VQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTM
GPGVSVDLTSATSH"
misc_feature 369143..369748
/gene="rplA"
/locus_tag="Rsph17029_0350"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(369182..369190,369197..369199,369203..369205,
369209..369211,369215..369217,369578..369580,
369584..369586,369590..369592,369728..369733,
369737..369739)
/gene="rplA"
/locus_tag="Rsph17029_0350"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 370014..370529
/gene="rplJ"
/locus_tag="Rsph17029_0351"
/db_xref="GeneID:4895166"
CDS 370014..370529
/gene="rplJ"
/locus_tag="Rsph17029_0351"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001042239.1"
/db_xref="GI:126461125"
/db_xref="InterPro:IPR001790"
/db_xref="InterPro:IPR002363"
/db_xref="GeneID:4895166"
/translation="MDRAQKEKVVEELGQIFESSGVVVVAHYAGITVAQMQDLRAQMR
EVGGSVRVAKNRLAKIALAGKPSEKMGDLLTGMTVMAYSEDPVAAAKVADAYAKKNDK
FVILGGAMGDTILDPAGVKTVAAMPSREELIAQIVSCIGAPASNIAGAIGAPASNIAG
ILSTLEEREAA"
misc_feature 370017..370484
/gene="rplJ"
/locus_tag="Rsph17029_0351"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(370029..370034,370041..370043,370173..370184,
370191..370193)
/gene="rplJ"
/locus_tag="Rsph17029_0351"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(370272..370274,370341..370343,370350..370352,
370398..370400,370407..370412,370419..370424,
370428..370445,370449..370457,370464..370469,
370473..370478,370482..370484)
/gene="rplJ"
/locus_tag="Rsph17029_0351"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 370599..370976
/gene="rplL"
/locus_tag="Rsph17029_0352"
/db_xref="GeneID:4897047"
CDS 370599..370976
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001042240.1"
/db_xref="GI:126461126"
/db_xref="InterPro:IPR000206"
/db_xref="InterPro:IPR013823"
/db_xref="GeneID:4897047"
/translation="MADLNKLAEDIVGLTLLEAQELKTILKDKYGIEPAAGGAVMMAG
PAAGAAAPAEEEKTEFDVVLTDAGANKINVIKEVRAITGLGLKEAKDLVEAGGKVKEA
VAKADAEAMKKKLEEAGAKVELK"
misc_feature 370602..>370874
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(370602..370604,370641..370649,370656..370661,
370668..370670,370677..370679,370722..370724,
370731..370736,370740..370748,370770..370775,
370836..370838,370842..370847,370851..370853,
370857..370862)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(370611..370613,370620..370622,370632..370634,
370671..370673,370686..370688)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(370653..370655,370662..370667,370677..370679,
370686..370688)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(370809..370814,370821..370826,370833..370835,
370854..370859,370866..370868)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(370812..370814,370824..370826,370833..370835,
370854..370859,370866..370868)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(370812..370814,370821..370826,370833..370835)
/gene="rplL"
/locus_tag="Rsph17029_0352"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 371221..375354
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/db_xref="GeneID:4897688"
CDS 371221..375354
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001042241.1"
/db_xref="GI:126461127"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007121"
/db_xref="InterPro:IPR007641"
/db_xref="InterPro:IPR007642"
/db_xref="InterPro:IPR007644"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR010243"
/db_xref="GeneID:4897688"
/translation="MAQSYVGQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDG
PKAADGEGIQGVFQSVFPIKDFNETAVLEFVKYELEKPKYDVDECQQRDMTYAAPLKV
TLRLIVFDVDETTGARSVKDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPG
VFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYA
LGMDQEGIMDAYYETVNFKHQKNRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGE
KATPRMVKKWIDEAQITELLVPFDHIVGRYVAQDIINEETGEIWVEAGDELTMEYDRD
GEVKGGTLKLLLDQGITDIPVLDIDNVNVGPYIRNTMAADKNMGRDTALMDIYRVMRP
GEPPTVEAASNLFDTLFFDSERYDLSAVGRVKMNMRLDLGKPDTQRTLDRDDIIACIK
ALTELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDTIM
PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFE
VRDVHPTHYGRMCPIETPEGQNIGLINSLATFARVNKYGFIETPYRKVVEGAVTDDVV
YMSATEEMRHTVAQANAQLDEEGRFVSDLISSRKAGEFMLNPPDAIDLIDVSPKQLVS
VAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAPFVGTGIEAVVARDSGAAIMARR
AGVIDQVDATRIVVRATEMLEPGEPGVDIYRLRKFKRSNQSSCINQRPLVKVGDVVHR
GEVVADGPCTDMGELALGRNVIVAFMPWNGYNYEDSILISERILRDDVYTSIHIEEYE
VAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPM
TPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHGVDKDERALQIEREEV
ERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGIRAGSEINEDLLSTLSRGQWW
QLALGEEADAKEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPGVMKMVKVFVAV
KRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPSRMNVGQILE
THMGWAARGLGIKIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFGDREDEDLVEM
AGRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPVTVGVK
YMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDADEE"
misc_feature 371299..>371886
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <372355..372642
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <372547..>374121
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(373705..373707,373747..373749)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(373762..373764,373873..373875,373879..373881,
373891..373899,373903..373905)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature <374494..375333
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(374533..374535,374539..374541,374545..374547,
374611..374613,374617..374619,374626..374628,
374635..374637,374650..374652,374662..374664,
374875..374877,374956..374958,374980..374988,
374992..374994,375031..375033,375040..375048,
375052..375057,375118..375126,375136..375138,
375142..375147,375151..375153,375157..375174,
375178..375195,375205..375207,375274..375276,
375286..375288,375292..375294,375298..375303,
375307..375309,375313..375324,375328..375330)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(374557..374559,374962..374964)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(374560..374562,374599..374601,374680..374685,
374689..374691,374944..374946,374995..374997)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(374560..374568,374575..374577,374581..374586,
374959..374982,374986..374988)
/gene="rpoB"
/locus_tag="Rsph17029_0353"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 375436..379683
/locus_tag="Rsph17029_0354"
/db_xref="GeneID:4896241"
CDS 375436..379683
/locus_tag="Rsph17029_0354"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001042242.1"
/db_xref="GI:126461128"
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
/db_xref="GeneID:4896241"
/translation="MNQELSTNPFNPVAPVKTFDEIKISLASPERILSWSYGEIKKPE
TINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRE
RMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQ
LMTEEEFLDAQDQYGADAFTANIGAEAIREMLSAIDLEQTAETLREELKEATGELKPK
KIIKRLKIVESFLESGNRPEWMILTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVI
NRNNRLKRLIELRAPDIIVRNEKRMLQEAVDALFDNGRRGRVITGTNKRPLKSLSDML
KGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYSRLEAKG
LSSTVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAI
QLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQD
MVLGLYYTTMERRGMKGEGMAFSSVEEVEHALAAGEVHLHATITARIKQIDEEGNEVV
KRYQTTPGRLRLGNLLPLNAKAPFELVNRLLRKKDVQNVIDTVYRYCGQKESVIFCDQ
IMGMGFREAFKAGISFGKDDMLIPDTKWPIVNEVRDQVKEFEQQYMDGLITQGEKYNK
VVDAWSKCSDKVAGEMMAEISAVRYDDAGAEKEPNSVYMMSHSGARGSPAQMKQLGGM
RGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLV
DVAQDCIVRTHDCGTENAITASAAVNEGEVVSPLAERVLGRVAAEDILVPGSDEVIVA
RGELIDERRADLVDQANVASVRIRSPLTCEAEEGVCAMCYGRDLARGTLVNIGEAVGI
IAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQEGRIEFRNPNLLENANGEQIVM
GRNMQLAIIDEAGQERATHKLTYGAKVHVKDGQTVKRATRLFEWDPYTLPIIAEKAGV
ARFVDLVSGISVREDTDEATGMTQKIVSDWRSTPKGGDLKPEIIIMNPETGDPMRNEA
GNPISYPMSVEAILSVEDGQTVRAGDVVARIPREGARTKDITGGLPRVAELFEARRPK
DHAIIAENDGYVRFGKDYKNKRRITIEPVDDTLNSVEYMVPKGKHIPVQEGDFVQKGD
YIMDGNPAPHDILRILGVEALANYMIDEVQEVYRLQGVKINDKHIEVIVRQMLQKYEI
LDSGETTLLKGEHVDKAELDEVNQKAMDHGMRPAHAEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIAHDRDQKVIDT
RRAEAESAAALAAPTDEVIDLGSEDSGLVETVENREE"
misc_feature 375484..376470
/locus_tag="Rsph17029_0354"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 375496..377985
/locus_tag="Rsph17029_0354"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 376147..376977
/locus_tag="Rsph17029_0354"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 376909..377370
/locus_tag="Rsph17029_0354"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 377455..377718
/locus_tag="Rsph17029_0354"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 378148..>378252
/locus_tag="Rsph17029_0354"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 378163..378165
/locus_tag="Rsph17029_0354"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <379063..379509
/locus_tag="Rsph17029_0354"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(379354..379356,379399..379404)
/locus_tag="Rsph17029_0354"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(379444..379446,379462..379464,379480..379482,
379489..379494,379504..379506)
/locus_tag="Rsph17029_0354"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene 379875..380801
/locus_tag="Rsph17029_0355"
/db_xref="GeneID:4896105"
CDS 379875..380801
/locus_tag="Rsph17029_0355"
/note="PFAM: protein of unknown function DUF6,
transmembrane;
KEGG: rsp:RSP_1711 possible transporter, RhaT family, DMT
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042243.1"
/db_xref="GI:126461129"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:4896105"
/translation="MRLSDNLRGALAMTVAMAAFTVNDALMKAVTQTMPLFQAIALRG
LVSLPLLFLYGWAVGGLRFRIPRRDGGLLALRAGADVLSTVAYLSALMVLPLANLVAI
LQSVPLAVTLAAALVLKEPLGWRRFSAILIGFCGVLLIVRPGAEGFSLWSLVGLAAVG
CIVARDLATRRIGSDLPAATIALWTSGAVTLLGLAGSLPSGFGPVTGGEALYLGGAAV
ALMAGYVSIVLAMRGGDIAAVSPFRYTALLWAIALGWLLFGDLPDGLALLGFAVITAT
GLFTIWREARLRRLPREASVDIPPDSPYTPPT"
misc_feature 379884..380720
/locus_tag="Rsph17029_0355"
/note="Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism / Amino
acid transport and metabolism / General function
prediction only]; Region: RhaT; COG0697"
/db_xref="CDD:223769"
gene 381014..381385
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/db_xref="GeneID:4896637"
CDS 381014..381385
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_001042244.1"
/db_xref="GI:126461130"
/db_xref="InterPro:IPR005679"
/db_xref="InterPro:IPR006032"
/db_xref="GeneID:4896637"
/translation="MPTIQQLIRKPREPKRVRSKSQHLESCPQKRGVCTRVYTTTPKK
PNSAMRKVAKVRLTNGFEVISYIPGEKHNLQEHSVVLIRGGRVKDLPGVRYHILRGVL
DTQGVKDRRQRRSKYGAKRPK"
misc_feature 381020..381343
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(381023..381028,381032..381037,381044..381049)
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 381023..381025
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(381047..381055,381089..381091,381095..381100,
381104..381106,381149..381154,381158..381166,
381185..381187,381209..381211,381218..381223,
381260..381265,381275..381280,381341..381343)
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(381140..381145,381275..381277)
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 381143..381148
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(381146..381163,381221..381247)
/gene="rpsL"
/locus_tag="Rsph17029_0356"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 381398..381868
/locus_tag="Rsph17029_0357"
/db_xref="GeneID:4896437"
CDS 381398..381868
/locus_tag="Rsph17029_0357"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_001042245.1"
/db_xref="GI:126461131"
/db_xref="InterPro:IPR000235"
/db_xref="InterPro:IPR005717"
/db_xref="GeneID:4896437"
/translation="MSRRHAAEKREILPDAKFGDTVLTKFMNNLMIDGKKSVAESIVY
NALDRVQTRLKREPLEAFHEALDNVKPSVEVRSRRVGGATYQVPVEVRTERREALAIR
WLITAARKRNENTMEERLAAELADACNNRGTAVKKREDTHKMADANKAFSHYRW"
misc_feature 381398..381865
/locus_tag="Rsph17029_0357"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 381893..384010
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/db_xref="GeneID:4895140"
CDS 381893..384010
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_001042246.1"
/db_xref="GI:126461132"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004540"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
/db_xref="GeneID:4895140"
/translation="MARDYPLELYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVH
DGAATMDWMEQEQERGITITSAATTTFWERTEDGKTPLTPKHRFNIIDTPGHVDFTIE
VERSLAVLDGAVCLLDANAGVEPQTETVWRQADRYKVPRIVFVNKMDKIGADFFNCVK
MIKDRTGATPAPIALPIGAEDKLEGIIDLVTMQEWVYQGEDLGASWIIKDVRDELKAE
AEEWRGKLIELAVEQDDEAMEAYLEGNEPDVPTLRKLIRKGCLAMAFVPVTAGSAFKN
KGVQPVLNSVIDYLPSPLDVPAYMGFAPGDETETRNIARSADDSQPFAALAFKIMNDP
FVGSLTFTRLYSGVLKKGDQMVNSTKGKRERVGRMMMMHAINREEIDEAFAGDIIALA
GLKETTTGDTLCDPANQVVLETMTFPEPVIEIAVEPKTKADQEKMGLALARLAAEDPS
FRVETDFESGQTIMKGMGELHLDILVDRMKREFKVEANIGAPQVAYRETISREAEIDY
THKKQTGGTGQFARVKLVITPTEPGEGYSFESKIVGGAVPKEYIPGVEKGIKSVMDSG
PLAGFPVIDFRVALIDGAFHDVDSSVLAFEIASRAAMREGLKKAGAKLLELIMKVEVV
TPEEYTGGIIGDLTSRRGMVQGQDTRGNANVINAFVPLANMFGYINTLRSMSSGRAVF
TMHFDHYDAVPQNISDEIQKKYA"
misc_feature 381893..384007
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 381926..382771
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 381941..381964
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(381944..381946,381950..381952,381962..381967,
381974..381976,381983..381988,382088..382093,
382178..382183,382250..382255,382361..382363,
382373..382375)
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(381950..381952,381956..381967,382328..382333,
382337..382339,382706..382714)
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 382031..382090
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 382076..382078
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 382166..382177
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 382172..382228
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 382328..382339
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 382706..382714
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 382859..383107
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 383378..383704
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 383744..383971
/locus_tag="Rsph17029_0358"
/gene_synonym="fusA"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 384085..385260
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/db_xref="GeneID:4896590"
CDS 384085..385260
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/EC_number="3.6.5.3"
/note="EF-Tu; promotes GTP-dependent binding of
aminoacyl-tRNA to the A-site of ribosomes during protein
biosynthesis; when the tRNA anticodon matches the mRNA
codon, GTP hydrolysis results; the inactive EF-Tu-GDP
leaves the ribosome and release of GDP is promoted by
elongation factor Ts; many prokaryotes have two copies of
the gene encoding EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_001042247.1"
/db_xref="GI:126461133"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004541"
/db_xref="InterPro:IPR005225"
/db_xref="GeneID:4896590"
/translation="MAKAKFERNKPHVNIGTIGHVDHGKTTLTAAITKYFGEFRAYDQ
IDGAPEERARGITISTAHVEYESDTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVN
AADGPMPQTREHILLGRQVGIPYMVVYMNKVDQVDDPELIELVEMEIRELLSSYDYPG
DDIPIIKGSALAAMNGTDKEIGEDSIRALIAAVDEYIPTPARAVDQPFLMPVEDVFSI
SGRGTVATGRIERGVVKVGEELEIVGIRPSKKTVCTGVEMFRKLLDQGEAGDNVGLLL
RGVDRDGIERGQVLCKPGSVKPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTD
VTGTVQLPEGTEMVMPGDNLKFNVELIAPIAMEEKLRFAIREGGRTVGAGVVSKIIA"
misc_feature 384085..385257
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 384115..384684
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 384139..384162
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(384142..384144,384148..384150,384160..384165,
384172..384174,384181..384186,384265..384270,
384322..384327,384394..384399,384403..384414,
384421..384423,384514..384516,384526..384528,
384604..384609)
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(384148..384165,384208..384210,384475..384480,
384484..384486,384589..384597)
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 384235..384267
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 384253..384255
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 384310..384321
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 384316..384372
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 384475..384486
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 384589..384597
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 384706..384966
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 384973..385242
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(385009..385011,385015..385023,385075..385077,
385195..385203,385231..385233)
/locus_tag="Rsph17029_0359"
/gene_synonym="tuf"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 385333..385641
/gene="rpsJ"
/locus_tag="Rsph17029_0360"
/gene_synonym="nusE"
/db_xref="GeneID:4895640"
CDS 385333..385641
/gene="rpsJ"
/locus_tag="Rsph17029_0360"
/gene_synonym="nusE"
/note="NusE; involved in assembly of the 30S subunit; in
the ribosome, this protein is involved in the binding of
tRNA; in Escherichia coli this protein was also found to
be involved in transcription antitermination; NusB/S10
heterodimers bind boxA sequences in the leader RNA of rrn
operons which is required for antitermination; binding of
NusB/S10 to boxA nucleates assembly of the antitermination
complex"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="YP_001042248.1"
/db_xref="GI:126461134"
/db_xref="InterPro:IPR001848"
/db_xref="InterPro:IPR005731"
/db_xref="GeneID:4895640"
/translation="MQGQTIRIRLKAFDYRVLDASTQEIVNTAKRTGAQVRGPIPLPN
KIEKFTVLRGPHIDKKSRDQWEIRTHKRLLDIVDPTPQTVDALMKLDLAAGVDIQIKV
"
misc_feature 385333..385638
/gene="rpsJ"
/locus_tag="Rsph17029_0360"
/gene_synonym="nusE"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 385655..386377
/gene="rplC"
/locus_tag="Rsph17029_0361"
/db_xref="GeneID:4896020"
CDS 385655..386377
/gene="rplC"
/locus_tag="Rsph17029_0361"
/note="binds directly near the 3' end of the 23S rRNA,
where it nucleates assembly of the 50S subunit; essential
for peptidyltransferase activity; mutations in this gene
confer resistance to tiamulin"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="YP_001042249.1"
/db_xref="GI:126461135"
/db_xref="InterPro:IPR000597"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:4896020"
/translation="MRSGVIAKKLGMTRLFLEDGKQVPVTVLQLDSLQVVAQRTTEKD
GYTAVQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHY
FAGQFVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGK
KMAGHMGAARVTTQNLQVVRTDSDRGLIMVKGAVPGSKGGWVTIKDAVKKPAPEQAIR
PAAIRAAAVAEETSTGGESNEG"
misc_feature 385655..386284
/gene="rplC"
/locus_tag="Rsph17029_0361"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:178784"
gene 386367..386987
/gene="rplD"
/locus_tag="Rsph17029_0362"
/db_xref="GeneID:4896982"
CDS 386367..386987
/gene="rplD"
/locus_tag="Rsph17029_0362"
/note="L4 is important during the early stages of 50S
assembly; it initially binds near the 5' end of the 23S
rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="YP_001042250.1"
/db_xref="GI:126461136"
/db_xref="InterPro:IPR002136"
/db_xref="GeneID:4896982"
/translation="MKAEVIKLDASPAGSIELDDAIFGLEPRADILHRVVRWQRAKAQ
AGTHSVLGKSDVSYSTKKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNK
KFRALGLKHALSSKATTGNLIVLEDIALAEGKTAMLAKAVKELGWKRVLVIDGADINE
NFAKAARNLEGVDVLPSIGANVYDILKRDTLVITKAGVEALEARLK"
misc_feature 386367..386984
/gene="rplD"
/locus_tag="Rsph17029_0362"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:180011"
gene 386984..387280
/gene="rplW"
/locus_tag="Rsph17029_0363"
/db_xref="GeneID:4896108"
CDS 386984..387280
/gene="rplW"
/locus_tag="Rsph17029_0363"
/note="binds third domain of 23S rRNA and protein L29;
part of exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L23"
/protein_id="YP_001042251.1"
/db_xref="GI:126461137"
/db_xref="InterPro:IPR013025"
/db_xref="GeneID:4896108"
/translation="MTAKPEHYDVIRKPVITEKATMTSEANGVVFAVAMEATKPQIKE
AVEAIFNVKVKAVNTVVTKGKTKKFKGRPGVRSDRKKAYVTLEEGNTIDVSTGL"
misc_feature 387005..387277
/gene="rplW"
/locus_tag="Rsph17029_0363"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:180228"
gene 387403..388242
/gene="rplB"
/locus_tag="Rsph17029_0364"
/db_xref="GeneID:4896298"
CDS 387403..388242
/gene="rplB"
/locus_tag="Rsph17029_0364"
/note="one of the primary rRNA-binding proteins; required
for association of the 30S and 50S subunits to form the
70S ribosome, for tRNA binding and peptide bond formation"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="YP_001042252.1"
/db_xref="GI:126461138"
/db_xref="InterPro:IPR002171"
/db_xref="InterPro:IPR005880"
/db_xref="GeneID:4896298"
/translation="MALKSYKPTTPGQRGLVLIDRSELWKGRPVKTLVEGLIKTGGRN
NTGRVTMWHKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDGELA
YILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGT
YAQFVGRDGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHKGVRP
TVRGVAMNPIDHPHGGGEGRTSGGRHPVTPWGKGTKGNRTRKSKASDKLIVRSRHAKK
KGR"
misc_feature 387403..388227
/gene="rplB"
/locus_tag="Rsph17029_0364"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:181807"
misc_feature 387526..387756
/gene="rplB"
/locus_tag="Rsph17029_0364"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 387772..388155
/gene="rplB"
/locus_tag="Rsph17029_0364"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 388246..388524
/gene="rpsS"
/locus_tag="Rsph17029_0365"
/db_xref="GeneID:4896136"
CDS 388246..388524
/gene="rpsS"
/locus_tag="Rsph17029_0365"
/note="protein S19 forms a complex with S13 that binds
strongly to the 16S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="YP_001042253.1"
/db_xref="GI:126461139"
/db_xref="InterPro:IPR002222"
/db_xref="InterPro:IPR005732"
/db_xref="GeneID:4896136"
/translation="MARSTWKGPFVDGYLLKKAEKSRESGKNEVIKIWSRRSTILPQF
VGLTFGVYNGKKHVPVNVTEEMIGQKFGEYSPTRTYYGHAADKKAKRK"
misc_feature 388246..388521
/gene="rpsS"
/locus_tag="Rsph17029_0365"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 388528..388908
/gene="rplV"
/locus_tag="Rsph17029_0366"
/db_xref="GeneID:4895286"
CDS 388528..388908
/gene="rplV"
/locus_tag="Rsph17029_0366"
/note="binds specifically to 23S rRNA during the early
stages of 50S assembly; makes contact with all 6 domains
of the 23S rRNA in the assembled 50S subunit and ribosome;
mutations in this gene result in erythromycin resistance;
located near peptidyl-transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="YP_001042254.1"
/db_xref="GI:126461140"
/db_xref="InterPro:IPR001063"
/db_xref="InterPro:IPR005727"
/db_xref="GeneID:4895286"
/translation="MGKEKNPRRVGENEAFAKVKMLRTSPQKLNLVAALIRGKKVDKA
IADLTFSKKRISQDVLKCLQSAIANAENNHGLDVDELVVSEAFCGKNLVMKRGRPRAR
GRFGKIMKPFSELTIKVKQVGETA"
misc_feature 388570..388884
/gene="rplV"
/locus_tag="Rsph17029_0366"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:48343"
misc_feature order(388570..388575,388639..388647,388651..388656,
388660..388665,388726..388743,388768..388785,
388879..388884)
/gene="rplV"
/locus_tag="Rsph17029_0366"
/note="putative translocon binding site; other site"
/db_xref="CDD:48343"
misc_feature order(388579..388581,388585..388587,388594..388596,
388600..388608,388615..388617,388627..388629,
388636..388638,388720..388722,388732..388734,
388741..388743,388780..388782,388786..388794,
388798..388800,388807..388809,388843..388860)
/gene="rplV"
/locus_tag="Rsph17029_0366"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:48343"
gene 388908..389624
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/db_xref="GeneID:4895785"
CDS 388908..389624
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/note="forms a complex with S10 and S14; binds the lower
part of the 30S subunit head and the mRNA in the complete
ribosome to position it for translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="YP_001042255.1"
/db_xref="GI:126461141"
/db_xref="InterPro:IPR001351"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR005704"
/db_xref="InterPro:IPR008282"
/db_xref="GeneID:4895785"
/translation="MGQKVNPIGMRLQVNRTWDSRWFAESKDYGNLLLEDLKMREFIH
DYAKQAGVSKVIIERPHRKCRVTIHTARPGVIIGKKGADIETLRKKLSAFTKSELHLN
IVEIRKPELDAQLVAESIAQQMERRVSFRRAMKRGVQNAMRIGALGIRVNVSGRLGGA
EIARTEWYREGRVPLHTLRADIDYATSEATTPYGIIGVKVWIFKGEILEHDPQAHDRR
HSEAQEGAAPRPPRRDRERA"
misc_feature 388908..389576
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/note="30S ribosomal protein S3; Reviewed; Region: rpsC;
PRK00310"
/db_xref="CDD:178972"
misc_feature 388911..389234
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:48410"
misc_feature 389139..389150
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48410"
misc_feature 389262..389513
/gene="rpsC"
/locus_tag="Rsph17029_0367"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:201068"
gene 389639..390052
/gene="rplP"
/locus_tag="Rsph17029_0368"
/db_xref="GeneID:4896084"
CDS 389639..390052
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="located in the peptidyl transferase center and may
be involved in peptidyl transferase activity; similar to
archaeal L10e"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="YP_001042256.1"
/db_xref="GI:126461142"
/db_xref="InterPro:IPR000114"
/db_xref="GeneID:4896084"
/translation="MLQPKRTKFRKQHKGRIHGEAKGGFLLNFGGFGLKATEPERVTA
RQIEAARRAITRHMKRQGRVWIRVFPDVPVTSKPTEVRMGKGKGSVDYWAAKVKPGRI
MFEIDGVSETIAREALRLGAMKLPVMTRIVVREDW"
misc_feature 389741..390034
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:88606"
misc_feature 389750..389755
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(389771..389776,389783..389785,389792..389794,
389804..389806,389813..389815,389831..389839,
389843..389845,389849..389851,389861..389866,
389885..389899,389939..389941,389993..389998,
390005..390010)
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88606"
misc_feature order(389786..389794,389801..389806)
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:88606"
misc_feature order(389813..389815,389822..389827,389831..389833,
389957..389959)
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(389879..389884,389891..389896)
/gene="rplP"
/locus_tag="Rsph17029_0368"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
gene 390291..390497
/locus_tag="Rsph17029_0369"
/db_xref="GeneID:4895870"
CDS 390291..390497
/locus_tag="Rsph17029_0369"
/note="one of the stabilizing components for the large
ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="YP_001042257.1"
/db_xref="GI:126461143"
/db_xref="InterPro:IPR001854"
/db_xref="GeneID:4895870"
/translation="MTTAQELRSKTPDQLRDQLVALKKEAFNLRFQQATGQLENTARM
RAVRRDVARIKTVLNEMAASAAAN"
misc_feature 390303..390470
/locus_tag="Rsph17029_0369"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:88602"
misc_feature order(390303..390305,390312..390314,390414..390416,
390444..390449,390453..390458,390468..390470)
/locus_tag="Rsph17029_0369"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88602"
misc_feature order(390303..390311,390315..390317,390327..390332,
390336..390341,390348..390353,390360..390365,
390372..390374,390381..390386,390408..390410,
390417..390419,390429..390431,390438..390443,
390450..390455,390462..390464)
/locus_tag="Rsph17029_0369"
/note="putative translocon interaction site; other site"
/db_xref="CDD:88602"
misc_feature order(390351..390353,390363..390365,390372..390374,
390384..390386,390429..390431)
/locus_tag="Rsph17029_0369"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:88602"
misc_feature order(390369..390371,390378..390383)
/locus_tag="Rsph17029_0369"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:88602"
misc_feature 390390..390395
/locus_tag="Rsph17029_0369"
/note="trigger factor interaction site; other site"
/db_xref="CDD:88602"
gene 390511..390753
/gene="rpsQ"
/locus_tag="Rsph17029_0370"
/db_xref="GeneID:4896007"
CDS 390511..390753
/gene="rpsQ"
/locus_tag="Rsph17029_0370"
/note="primary binding protein; helps mediate assembly;
involved in translation fidelity"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="YP_001042258.1"
/db_xref="GI:126461144"
/db_xref="InterPro:IPR000266"
/db_xref="GeneID:4896007"
/translation="MPKRILQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRA
HDPENQFKVGDIVRIEECAPISKTKRWKVVTDAVVA"
misc_feature 390511..390732
/gene="rpsQ"
/locus_tag="Rsph17029_0370"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:180162"
gene 390827..391195
/gene="rplN"
/locus_tag="Rsph17029_0371"
/db_xref="GeneID:4896691"
CDS 390827..391195
/gene="rplN"
/locus_tag="Rsph17029_0371"
/note="binds to the 23S rRNA between the centers for
peptidyl transferase and GTPase"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="YP_001042259.1"
/db_xref="GI:126461145"
/db_xref="InterPro:IPR000218"
/db_xref="InterPro:IPR005745"
/db_xref="GeneID:4896691"
/translation="MIQMQTNLDVADNSGARRVQCIKVLGGSHRRYASVGDIIVVSVK
EAIPRGRVKKGDVRKAVVVRTAKEVRREDGTTIRFDRNAAVILNNQGEPVGTRIFGPV
VRELRAKNFMKIISLAPEVL"
misc_feature 390827..391192
/gene="rplN"
/locus_tag="Rsph17029_0371"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 391195..391500
/gene="rplX"
/locus_tag="Rsph17029_0372"
/db_xref="GeneID:4896518"
CDS 391195..391500
/gene="rplX"
/locus_tag="Rsph17029_0372"
/note="assembly initiator protein; binds to 5' end of 23S
rRNA and nucleates assembly of the 50S; surrounds
polypeptide exit tunnel"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="YP_001042260.1"
/db_xref="GI:126461146"
/db_xref="InterPro:IPR003256"
/db_xref="InterPro:IPR005824"
/db_xref="InterPro:IPR005825"
/db_xref="InterPro:IPR006646"
/db_xref="GeneID:4896518"
/translation="MAAKLKKGDRVVVLAGKDKGKQGEITAVMPKDNKAVVEGVNVAI
RHTKQTPTAQGGRLAKAMPIDLSNLALLDANGKATRVGFRFEGEKKVRYAKTTGDVI"
misc_feature 391195..391497
/gene="rplX"
/locus_tag="Rsph17029_0372"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:178786"
misc_feature 391204..391404
/gene="rplX"
/locus_tag="Rsph17029_0372"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK12281"
/db_xref="CDD:183399"
gene 391500..392060
/gene="rplE"
/locus_tag="Rsph17029_0373"
/db_xref="GeneID:4895907"
CDS 391500..392060
/gene="rplE"
/locus_tag="Rsph17029_0373"
/note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts
5S rRNA and P site tRNA; forms a bridge to the 30S subunit
in the ribosome by binding to S13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="YP_001042261.1"
/db_xref="GI:126461147"
/db_xref="InterPro:IPR002132"
/db_xref="InterPro:IPR003236"
/db_xref="GeneID:4895907"
/translation="MLDQTNYTPRLKAAYANTVRAAMKEEFGYKNDMQIPRLDKIVLN
MGVGEAVKDTKKVKTAAEELSMIAGQKAVVTHAKKSIAGFRVREQMPLGCKVTLRGDR
MYEFLDRLITIALPRVRDFRGVKGNSFDGRGNYAMGLKEQFVFPEINFDKVDEVLGMD
IIICTTAKTDAEAKALLKQFNMPFIS"
misc_feature 391521..392051
/gene="rplE"
/locus_tag="Rsph17029_0373"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 391590..391760
/gene="rplE"
/locus_tag="Rsph17029_0373"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 391770..392054
/gene="rplE"
/locus_tag="Rsph17029_0373"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 392080..392385
/gene="rpsN"
/locus_tag="Rsph17029_0374"
/db_xref="GeneID:4896031"
CDS 392080..392385
/gene="rpsN"
/locus_tag="Rsph17029_0374"
/note="located in the peptidyl transferase center and
involved in assembly of 30S ribosome subunit; similar to
what is observed with proteins L31 and L33, some proteins
in this family contain CXXC motifs that are involved in
zinc binding; if two copies are present in a genome, then
the duplicated copy appears to have lost the zinc-binding
motif and is instead regulated by zinc; the proteins in
this group do not appear to have the zinc-binding motif"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="YP_001042262.1"
/db_xref="GI:126461148"
/db_xref="InterPro:IPR001209"
/db_xref="GeneID:4896031"
/translation="MAKKSMIEREIKRAKMVQQYAAKRASLKEITTNADLPMEQRFKA
QLKLAELPRNSSATRIHNRCQLTGRPHAYYRKLKLSRIMLRELASFGQIPGMVKSSW"
misc_feature 392080..392382
/gene="rpsN"
/locus_tag="Rsph17029_0374"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08881"
/db_xref="CDD:181574"
gene 392398..392796
/gene="rpsH"
/locus_tag="Rsph17029_0375"
/db_xref="GeneID:4895942"
CDS 392398..392796
/gene="rpsH"
/locus_tag="Rsph17029_0375"
/note="binds directly to 16S rRNA central domain where it
helps coordinate assembly of the platform of the 30S
subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="YP_001042263.1"
/db_xref="GI:126461149"
/db_xref="InterPro:IPR000630"
/db_xref="GeneID:4895942"
/translation="MSVNDPLGDMLTRIRNAQLRGKSTVSTPASRLRAWVLDVLQAEG
YIRGYEKKETENGQGELVISLKYFEGTPVIRELKRVSKPGRRVYMATKDLPSVRNGLG
VSIISTPKGVMSDASARSANVGGEVLCTVF"
misc_feature 392401..392793
/gene="rpsH"
/locus_tag="Rsph17029_0375"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:178892"
gene 392807..393340
/gene="rplF"
/locus_tag="Rsph17029_0376"
/db_xref="GeneID:4895918"
CDS 392807..393340
/gene="rplF"
/locus_tag="Rsph17029_0376"
/note="ribosomal protein L6 appears to have arisen as a
result of an ancient gene duplication as based on
structural comparison of the Bacillus stearothermophilus
protein; RNA-binding appears to be in the C-terminal
domain; mutations in the L6 gene confer resistance to
aminoglycoside antibiotics such as gentamicin and these
occur in truncations of the C-terminal domain; it has been
localized to a region between the base of the L7/L12 stalk
and the central protuberance"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="YP_001042264.1"
/db_xref="GI:126461150"
/db_xref="InterPro:IPR000702"
/db_xref="InterPro:IPR002358"
/db_xref="GeneID:4895918"
/translation="MSRIGKKPVPLPKGVTASISGQSIEVKGPKGTRSFSATDDVTLA
LDEGSVKVTPRGTSKRARQQWGMVRSQVENLVTGVTSGFKKELEISGVGYRAQMAGNV
LKLSLGYSHDVNFEVPAGVTVTTPKQTEITVEGIDQQLVGQVAANIREWRRPEPYKGK
GIRYKDEFIFRKEGKKK"
misc_feature 392807..393337
/gene="rplF"
/locus_tag="Rsph17029_0376"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:180118"
misc_feature 392837..393052
/gene="rplF"
/locus_tag="Rsph17029_0376"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:109407"
misc_feature 393077..393301
/gene="rplF"
/locus_tag="Rsph17029_0376"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:109407"
gene 393352..393711
/gene="rplR"
/locus_tag="Rsph17029_0377"
/db_xref="GeneID:4896507"
CDS 393352..393711
/gene="rplR"
/locus_tag="Rsph17029_0377"
/note="binds 5S rRNA along with protein L5 and L25"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="YP_001042265.1"
/db_xref="GI:126461151"
/db_xref="InterPro:IPR004389"
/db_xref="InterPro:IPR005484"
/db_xref="GeneID:4896507"
/translation="MANTKRELFLKRRLRVRNKLKASANGRLRLSVHRSSKNISAQLI
DDANGVTLAAASTLEKGLGFVGKNNVEASAAVGRAIAERAKAAGIEECFFDRGGFLFH
GKIKALADAAREGGLKF"
misc_feature 393424..393702
/gene="rplR"
/locus_tag="Rsph17029_0377"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:88603"
misc_feature order(393436..393438,393448..393465,393469..393471,
393475..393477,393496..393504,393511..393513,
393628..393630,393661..393663)
/gene="rplR"
/locus_tag="Rsph17029_0377"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88603"
misc_feature order(393631..393633,393640..393642,393688..393690)
/gene="rplR"
/locus_tag="Rsph17029_0377"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88603"
misc_feature 393646..393648
/gene="rplR"
/locus_tag="Rsph17029_0377"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:88603"
gene 393723..394286
/gene="rpsE"
/locus_tag="Rsph17029_0378"
/db_xref="GeneID:4896583"
CDS 393723..394286
/gene="rpsE"
/locus_tag="Rsph17029_0378"
/note="located at the back of the 30S subunit body where
it stabilizes the conformation of the head with respect to
the body; contacts S4 and S8; with S4 and S12 plays a role
in translational accuracy; mutations in this gene result
in spectinomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="YP_001042266.1"
/db_xref="GI:126461152"
/db_xref="InterPro:IPR005324"
/db_xref="InterPro:IPR005712"
/db_xref="InterPro:IPR013810"
/db_xref="GeneID:4896583"
/translation="MAERENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGF
AALVVVGDQRGRVGFGKGKAKEVPEAIRKATEQAKRQMIRVALRDGRTLHHDQEGRHG
AGKVVMRAAVPGTGIIAGGPMRAVFEMLGIQDVVAKSLGSQNPYNMIRATMDGLKRES
SPRQVAQRRGKKVADILKKPEAEVAEA"
misc_feature 393777..394256
/gene="rpsE"
/locus_tag="Rsph17029_0378"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:179061"
misc_feature 393783..393983
/gene="rpsE"
/locus_tag="Rsph17029_0378"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 394014..394232
/gene="rpsE"
/locus_tag="Rsph17029_0378"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 394299..394487
/gene="rpmD"
/locus_tag="Rsph17029_0379"
/db_xref="GeneID:4898079"
CDS 394299..394487
/gene="rpmD"
/locus_tag="Rsph17029_0379"
/note="L30 binds domain II of the 23S rRNA and the 5S
rRNA; similar to eukaryotic protein L7"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="YP_001042267.1"
/db_xref="GI:126461153"
/db_xref="InterPro:IPR000517"
/db_xref="InterPro:IPR005996"
/db_xref="GeneID:4898079"
/translation="MAKTIIVKQVRSAARRPAVQTAVLKGLGLNKMHRTRELEDTPSI
RGMVAKIPHLVEIIEERG"
misc_feature 394311..394469
/gene="rpmD"
/locus_tag="Rsph17029_0379"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(394329..394334,394338..394343,394347..394355,
394362..394367,394374..394382,394386..394388,
394395..394397,394410..394415,394422..394430,
394434..394439)
/gene="rpmD"
/locus_tag="Rsph17029_0379"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 394644..395129
/gene="rplO"
/locus_tag="Rsph17029_0380"
/db_xref="GeneID:4896797"
CDS 394644..395129
/gene="rplO"
/locus_tag="Rsph17029_0380"
/note="late assembly protein"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="YP_001042268.1"
/db_xref="GI:126461154"
/db_xref="InterPro:IPR001196"
/db_xref="InterPro:IPR005749"
/db_xref="GeneID:4896797"
/translation="MKLNELRDNEGAARKKKRVARGPGSGKGKTAGRGIKGQKSRSGV
ALNGYEGGQMPLYRRLPKRGFTKPNRKEYAVVNLGLIQKFVDAGKLDASQPIDENAIV
AAGVTSHKRDGIRVLAKGEITAKLALTVSGASKSAVEAIEKAGGSITLTAPAAAAASA
E"
misc_feature 394644..395096
/gene="rplO"
/locus_tag="Rsph17029_0380"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:180155"
gene 395230..396588
/gene="secY"
/locus_tag="Rsph17029_0381"
/db_xref="GeneID:4896324"
CDS 395230..396588
/gene="secY"
/locus_tag="Rsph17029_0381"
/note="forms heterotrimeric complex in the membrane; in
bacteria the complex consists of SecY which forms the
channel pore and SecE and SecG; the SecG subunit is not
essential; in bacteria translocation is driven via the
SecA ATPase"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecY"
/protein_id="YP_001042269.1"
/db_xref="GI:126461155"
/db_xref="InterPro:IPR002208"
/db_xref="GeneID:4896324"
/translation="MASAAEQMAANLSWGALGKATDLRQRIFFTIGLLMVYRLGTYIP
VPGIDGSALRQFMDSATAGIGGMLNMFTGGAISRMGIFALGIMPYISASIIVQLMASM
VPKLEQLKKEGEQGRKKINQYTRYGTVFLATFQAWGIAMSLEAGDLVTDPGMFFRAAC
VITLVGGTMFLMWLGEQITARGIGNGISLIIFVGIVAEIPAHLAQFLSQGRSGAISPA
VIVGVIAMVIAVITFVVFMERALRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIP
AIFASSLLLLPVTISTFSGQQTGPVMSTILAYFGPGQPLYLLFFAGMIVFFAYFYTAN
VAFKVDDVAENLKNQNGFIPGIRPGKKTEEYLEYVVNRILVLGSAYLAAVCLLPEILR
NQLGIPFYFGGTSVLIVVSVTMDTINQVQSHLLAHQYEGLIERSQLRGRKRTGAKTPT
RR"
misc_feature 395257..396528
/gene="secY"
/locus_tag="Rsph17029_0381"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:181698"
misc_feature 395467..396480
/gene="secY"
/locus_tag="Rsph17029_0381"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:201169"
gene 396599..397252
/gene="adk"
/locus_tag="Rsph17029_0382"
/db_xref="GeneID:4895830"
CDS 396599..397252
/gene="adk"
/locus_tag="Rsph17029_0382"
/note="essential enzyme that recycles AMP in active cells;
converts ATP and AMP to two molecules of ADP"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_001042270.1"
/db_xref="GI:126461156"
/db_xref="InterPro:IPR000850"
/db_xref="InterPro:IPR006259"
/db_xref="InterPro:IPR007862"
/db_xref="InterPro:IPR011769"
/db_xref="GeneID:4895830"
/translation="MVNVILLGPPGAGKGTQAKRLEESRGMVQLSTGDMLREAKTSGS
EMGRRAAEVMDRGELVTDEIVIGLIREKLQSPAAGGFIFDGFPRTLKQADALGELLAQ
MGQGLDAVIEMQVDDAALVARITGRYSCGSCGAVYHDDTKPTKVEGVCDVCGSTDLRR
RADDTAEALSKRLMEYYKKTSPLIGYYYAKGQLSSVDGLAEMDAVSAAISKVLDKRG"
misc_feature 396605..397246
/gene="adk"
/locus_tag="Rsph17029_0382"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:178957"
misc_feature 396605..397213
/gene="adk"
/locus_tag="Rsph17029_0382"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:30189"
misc_feature order(396692..396694,396707..396709,396776..396778,
396848..396853,396857..396862,396872..396874)
/gene="adk"
/locus_tag="Rsph17029_0382"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:30189"
misc_feature order(396707..396709,396848..396850,396860..396862,
396977..396979,397112..397114,397124..397126)
/gene="adk"
/locus_tag="Rsph17029_0382"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:30189"
gene 397427..397795
/gene="rpsM"
/locus_tag="Rsph17029_0383"
/db_xref="GeneID:4896804"
CDS 397427..397795
/gene="rpsM"
/locus_tag="Rsph17029_0383"
/note="located at the top of the head of the 30S subunit,
it contacts several helices of the 16S rRNA; makes contact
with the large subunit via RNA-protein interactions and
via protein-protein interactions with L5; contacts P-site
tRNA"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="YP_001042271.1"
/db_xref="GI:126461157"
/db_xref="InterPro:IPR001892"
/db_xref="GeneID:4896804"
/translation="MARIAGVNIPTAKRVPIALTYIHGIGDFVAGQICDAVGIDRARR
VNELSDAEVLSIREYIDANVTVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQR
THTNARTRKGPAKAIAGKKK"
misc_feature 397427..397756
/gene="rpsM"
/locus_tag="Rsph17029_0383"
/note="Ribosomal protein S13 [Translation, ribosomal
structure and biogenesis]; Region: RpsM; COG0099"
/db_xref="CDD:30448"
misc_feature 397433..397756
/gene="rpsM"
/locus_tag="Rsph17029_0383"
/note="Ribosomal protein S13/S18; Region: Ribosomal_S13;
cl00331"
/db_xref="CDD:214049"
gene 397809..398198
/locus_tag="Rsph17029_0384"
/db_xref="GeneID:4897219"
CDS 397809..398198
/locus_tag="Rsph17029_0384"
/note="located on the platform of the 30S subunit, it
bridges several disparate RNA helices of the 16S rRNA;
forms part of the Shine-Dalgarno cleft in the 70S
ribosome; interacts with S7 and S18 and IF-3"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="YP_001042272.1"
/db_xref="GI:126461158"
/db_xref="InterPro:IPR001971"
/db_xref="GeneID:4897219"
/translation="MARDKTRMKRKERKNIAAGVAHVNSSFNNTKILISDVQGNAISW
SSAGTMGFKGSRKSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQGPGSGRESALRALAA
AGLNITSIRDVTPMAHNGCRPPKRRRV"
misc_feature 397812..398195
/locus_tag="Rsph17029_0384"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 398314..399330
/locus_tag="Rsph17029_0385"
/db_xref="GeneID:4895715"
CDS 398314..399330
/locus_tag="Rsph17029_0385"
/EC_number="2.7.7.6"
/note="catalyzes the transcription of DNA into RNA using
the four ribonucleoside triphosphates as substrates.
Dimerization of the alpha subunit is the first step in the
sequential assembly of subunits to form the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="YP_001042273.1"
/db_xref="GI:126461159"
/db_xref="InterPro:IPR011260"
/db_xref="InterPro:IPR011261"
/db_xref="InterPro:IPR011262"
/db_xref="InterPro:IPR011263"
/db_xref="InterPro:IPR011773"
/db_xref="GeneID:4895715"
/translation="MIHKNWAELIKPTQLVVKPGADPARVATVIAEPLERGFGLTLGN
ALRRVLLSSLQGAAITSVQIDNVLHEFSSVAGVREDVTDIVLNLKGVSIKMEVEGPKR
LSISAKGPGVVTAGDISESNGIEILNKDHVICHLDEGADVFMELTVNTGKGYVAADKN
RPEDAPIGLIPIDAIYSPVKKVSYEVTPTREGQVLDYDKLTMRIETDGGLTPDDAVAY
AARILQDQLSIFVNFEEPESATRHDVEDGLEFNPLLLKKVDELELSVRSANCLKNDNI
VYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLSGMGLHLGMDVEDWPPENIEDLAKRF
EDQF"
misc_feature 398335..399264
/locus_tag="Rsph17029_0385"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:179956"
misc_feature 398392..399003
/locus_tag="Rsph17029_0385"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(398395..398397,398431..398433,398443..398445,
398452..398457,398518..398520,398524..398526,
398530..398532,398536..398547,398560..398562,
398578..398580,398722..398724,398773..398775,
398830..398832,398836..398838,398854..398862,
398866..398877,398905..398907,398914..398916,
398920..398922)
/locus_tag="Rsph17029_0385"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(398404..398406,398413..398415,398419..398427,
398434..398436,398446..398448,398455..398460,
398470..398472,398971..398973,398980..398985,
398989..398994,398998..399003)
/locus_tag="Rsph17029_0385"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(398524..398526,398560..398562,398569..398571,
398578..398583,398770..398775,398779..398781,
398836..398838,398851..398856,398881..398883)
/locus_tag="Rsph17029_0385"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 399046..399240
/locus_tag="Rsph17029_0385"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 399431..399850
/gene="rplQ"
/locus_tag="Rsph17029_0386"
/db_xref="GeneID:4896439"
CDS 399431..399850
/gene="rplQ"
/locus_tag="Rsph17029_0386"
/note="is a component of the macrolide binding site in the
peptidyl transferase center"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="YP_001042274.1"
/db_xref="GI:126461160"
/db_xref="InterPro:IPR000456"
/db_xref="GeneID:4896439"
/translation="MRHARGYRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKEL
RPIIEKLITLAKRGDLHARRQAAAQLKEDRHVARLFEILGPRYAERAGGYVRVLKAGF
RYGDMAPMAIIEFVDRDPNAKGAADKARTAAEEALEE"
misc_feature 399446..399778
/gene="rplQ"
/locus_tag="Rsph17029_0386"
/note="50S ribosomal protein L17; Validated; Region: rplQ;
PRK05591"
/db_xref="CDD:180154"
gene 400109..400720
/locus_tag="Rsph17029_0387"
/db_xref="GeneID:4897583"
CDS 400109..400720
/locus_tag="Rsph17029_0387"
/note="PFAM: regulatory protein, LuxR; Autoinducer-binding
domain protein;
KEGG: rsp:RSP_1741 possible LuxR family protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_001042275.1"
/db_xref="GI:126461161"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR005143"
/db_xref="GeneID:4897583"
/translation="MTINSKIDLEISQLRRMATAGYFLGLHVRFTSPLITMQSYREDW
IEYYTEKGYVIYDPTIRWALSETGHRRWSDLAEQDSRGVFAAATQFDLRFGVTCSWGT
RESRSLGSFARSDREFTDREVELIFSLFQRLHELTQPPQELTQPQIEALRCIAGGDRH
AAAAMKLGISESALKARIASARQRLGARTTAEAIQRAKEYRLI"
misc_feature <400223..400474
/locus_tag="Rsph17029_0387"
/note="Autoinducer binding domain; Region: Autoind_bind;
pfam03472"
/db_xref="CDD:202654"
misc_feature 400550..400699
/locus_tag="Rsph17029_0387"
/note="helix_turn_helix, Lux Regulon; Region: HTH_LUXR;
smart00421"
/db_xref="CDD:197715"
misc_feature order(400571..400573,400577..400579,400583..400585,
400676..400684,400691..400693,400700..400705)
/locus_tag="Rsph17029_0387"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
misc_feature order(400583..400591,400613..400618,400622..400627,
400631..400645,400676..400678)
/locus_tag="Rsph17029_0387"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
gene 400776..402161
/locus_tag="Rsph17029_0388"
/db_xref="GeneID:4897569"
CDS 400776..402161
/locus_tag="Rsph17029_0388"
/note="KEGG: rsp:RSP_1742 serine protease, trypsin family;
TIGRFAM: protease Do;
PFAM: peptidase S1 and S6, chymotrypsin/Hap;
SMART: PDZ/DHR/GLGF domain protein"
/codon_start=1
/transl_table=11
/product="protease Do"
/protein_id="YP_001042276.1"
/db_xref="GI:126461162"
/db_xref="InterPro:IPR001254"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR001940"
/db_xref="InterPro:IPR011782"
/db_xref="GeneID:4897569"
/translation="MRHALLAFSLIALLSPLAAPAETRLPESAAEISLSFAPVVRSAA
PAVVNIYATRVVEQRVSPFAADPFFDQLFRDFGRRQPRVQNSLGSGVIVSGDGIVVSN
YHVVGQADAIRVVLNDRREYEAEVMLADQDSDLAVLKLKEAADLPHLGLRDSDGVEVG
ELVLAIGNPFGVGQTVSQGIVSGLARSGLSIDGGRGYFIQTDAAINPGNSGGALVDTA
GRLVGINTAILTQSGGSNGIGFAIPANLVRSFLAQAEAGEARFQRPWAGVNGQAVDAS
MAEAMGLERPEGVVLTELDPESPFRAAGLRAGDVVVALEGQRTDSPQEVIFRLSSLGI
GARATVSYLRDGETREAEIALVVAPDKPPRETVALRETVLAGLTVERLNPAVRAELNL
PLTLEGVVVRASEATAAQTGLRPGDILLEINGRRIERPRDVERAAQERVRWWQIDVLR
DGKPLRLRFRL"
misc_feature 400920..402152
/locus_tag="Rsph17029_0388"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature 401079..401447
/locus_tag="Rsph17029_0388"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 401565..401834
/locus_tag="Rsph17029_0388"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(401568..401579,401583..401585,401736..401741,
401748..401753)
/locus_tag="Rsph17029_0388"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature 401901..402152
/locus_tag="Rsph17029_0388"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(401901..401906,401910..401912,402060..402065,
402072..402077)
/locus_tag="Rsph17029_0388"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene 402200..403513
/locus_tag="Rsph17029_0389"
/db_xref="GeneID:4895188"
CDS 402200..403513
/locus_tag="Rsph17029_0389"
/note="PFAM: AAA ATPase, central domain protein; ATPase
associated with various cellular activities, AAA_5;
SMART: AAA ATPase;
KEGG: rsp:RSP_1743 ATPase, AAA family"
/codon_start=1
/transl_table=11
/product="recombination factor protein RarA"
/protein_id="YP_001042277.1"
/db_xref="GI:126461163"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:4895188"
/translation="MSDLFDREPAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGP
LGAMLASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFEAA
KLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAALMSR
AQVIVLERLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQVM
AWKVKGPLDRDQLATRLMRRAAKYDKSGEEHYNLISALHKSVRGSDPDAALYWFARML
EGGEDPRFLARRITRMAVEDIGLADPQAQGICLEAWATYERLGSPEGELALAEALVYL
ALSPKSNAVYTAYKAARAAAKQTGSEPPPKHILNAPTKMMKEIGYGSGYQYDHDAEDG
FSGQNYFPESMKRPVWYLPQERGFERELKKRTDYFSKLRAKRQGG"
misc_feature 402269..403486
/locus_tag="Rsph17029_0389"
/note="recombination factor protein RarA; Reviewed;
Region: PRK13342"
/db_xref="CDD:183986"
misc_feature 402392..402694
/locus_tag="Rsph17029_0389"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature order(402392..402406,402548..402550,402635..402637)
/locus_tag="Rsph17029_0389"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 402392..402403
/locus_tag="Rsph17029_0389"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 402536..402553
/locus_tag="Rsph17029_0389"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 402677..402679
/locus_tag="Rsph17029_0389"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 402983..403486
/locus_tag="Rsph17029_0389"
/note="MgsA AAA+ ATPase C terminal; Region: MgsA_C;
pfam12002"
/db_xref="CDD:192911"
gene 403545..403919
/locus_tag="Rsph17029_0390"
/db_xref="GeneID:4895391"
CDS 403545..403919
/locus_tag="Rsph17029_0390"
/note="may be involved in chromosome condensation;
overexpression in Escherichia coli protects against
decondensation by camphor; overexpressing the protein
results in an increase in supercoiling"
/codon_start=1
/transl_table=11
/product="camphor resistance protein CrcB"
/protein_id="YP_001042278.1"
/db_xref="GI:126461164"
/db_xref="InterPro:IPR003691"
/db_xref="GeneID:4895391"
/translation="MISSLLQVALGGALGASARYLTNVGSMRLFGPAFPVGTMIVNVV
GSFLMGVLVVVLAHKGNRYAPFLMTGMLGGFTTFSAFSLDAVTLYERGQAGLAAAYVG
LSVGLSLAGLMAGMAAVRGWMA"
misc_feature 403599..403916
/locus_tag="Rsph17029_0390"
/note="camphor resistance protein CrcB; Provisional;
Region: PRK14209"
/db_xref="CDD:184568"
gene 403916..404956
/locus_tag="Rsph17029_0391"
/db_xref="GeneID:4895490"
CDS 403916..404956
/locus_tag="Rsph17029_0391"
/note="TIGRFAM: pseudouridine synthase, RluA family;
PFAM: RNA-binding S4 domain protein; pseudouridine
synthase;
KEGG: rsp:RSP_1745 pseudouridine synthase"
/codon_start=1
/transl_table=11
/product="RluA family pseudouridine synthase"
/protein_id="YP_001042279.1"
/db_xref="GI:126461165"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006145"
/db_xref="InterPro:IPR006224"
/db_xref="InterPro:IPR006225"
/db_xref="GeneID:4895490"
/translation="MSSVQLLKVTADEGEQRLDRWFKRRFPHVTQGAVEKMCRTGQVR
VDGARAKASDRVAEGMEIRVPPLPDPDAPRPQASRVTKSDEQMIQDCVIYRDNDIIVL
NKPPGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVAR
ALSESFRHRNTRKIYWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVG
DYPEAKRAQTDFFTLWFLGSRCAWMALSPITGRTHQLRAHMAELGHPIVGDGKYGGSG
QENLGDGWGAQIGGEMSRKLHLHARSLTIEHPIKKDLVTFTAPLPGHMAKTWKLLDWK
EGDVPEDPFGAF"
misc_feature 403925..404878
/locus_tag="Rsph17029_0391"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 403961..404224
/locus_tag="Rsph17029_0391"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(403964..403966,404000..404005,404009..404014,
404018..404023,404030..404035,404039..404041,
404060..404065,404066..404080,404084..404086)
/locus_tag="Rsph17029_0391"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 404210..404830
/locus_tag="Rsph17029_0391"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(404333..404344,404681..404683)
/locus_tag="Rsph17029_0391"
/note="active site"
/db_xref="CDD:211346"
gene 404956..405663
/locus_tag="Rsph17029_0392"
/db_xref="GeneID:4895614"
CDS 404956..405663
/locus_tag="Rsph17029_0392"
/note="PFAM: ATP12 ATPase;
KEGG: rsp:RSP_1746 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ATP12 ATPase"
/protein_id="YP_001042280.1"
/db_xref="GI:126461166"
/db_xref="InterPro:IPR011419"
/db_xref="GeneID:4895614"
/translation="MAGWGAKRFWKEASVAEEPGGFAVLLDGRGVRTPAKRPLILPTC
ALAEAVASEWQAQEGEVRPETMPVTRSANSALDKVAPQFDEVTEMLAAYGGTDLLCYR
ATAPEALVARQARAWDPVLAWAAERFEAPLETTAGVMHQAQPEASLTRLAEHVRGFSP
FQVAGFHDLVAISGSLILGLGVTEGHLLPEEAWELSRLDESWQIEQWGADEEAAEIEA
FRRTAFLQAARFYALCG"
misc_feature 404974..405339
/locus_tag="Rsph17029_0392"
/note="ATP12 chaperone protein; Region: ATP12; pfam07542"
/db_xref="CDD:203677"
gene 405890..406906
/locus_tag="Rsph17029_0393"
/db_xref="GeneID:4895636"
CDS 405890..406906
/locus_tag="Rsph17029_0393"
/note="TIGRFAM: cationic amino acid ABC transporter,
periplasmic binding protein;
SMART: extracellular solute-binding protein, family 3;
KEGG: rsp:RSP_1747 ABC
glutamate/glutamine/aspartate/asparagine transporter,
periplasmic substrate-binding protein"
/codon_start=1
/transl_table=11
/product="cationic amino acid ABC transporter
substrate-binding protein"
/protein_id="YP_001042281.1"
/db_xref="GI:126461167"
/db_xref="InterPro:IPR001638"
/db_xref="InterPro:IPR005768"
/db_xref="GeneID:4895636"
/translation="MTKSVFLGTLTVAGLAAGLASAATLDDVKARGELNCGVSTGLTG
FSLPDANGNWTGFDVSLCRAVAAAVLGDGTKVKFVPTTGQTRFTALASGEVDMLARNS
TWTFSRDTDLKLDFVGVNYYDGQGFMVRKDLGVTSAKELDGATVCIQTGTTTELNLAD
WFKVNNLSYTPVAVETNAEGEQQYAAGACDAYTTDASGLAATRAAFADPENHIILPEI
ISKEPLGPAVRHGDNEWADIVRWTLNALIAAEEYGVTSANMEELAANSPNPEIQRVLG
VQGDLGKMIRLDNDWAKRAIAVGGNYGEIFAATIGEATPIGLARGLNAQWTQGGLLYA
PPFR"
misc_feature 405986..406645
/locus_tag="Rsph17029_0393"
/note="Bacterial periplasmic substrate-binding proteins;
Region: PBPb; smart00062"
/db_xref="CDD:197497"
misc_feature 405989..406645
/locus_tag="Rsph17029_0393"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature order(406013..406015,406136..406138,406211..406213,
406346..406348,406472..406474)
/locus_tag="Rsph17029_0393"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(406421..406423,406433..406435,406451..406453)
/locus_tag="Rsph17029_0393"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 406553..406570
/locus_tag="Rsph17029_0393"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 407055..408317
/locus_tag="Rsph17029_0394"
/db_xref="GeneID:4895729"
CDS 407055..408317
/locus_tag="Rsph17029_0394"
/note="TIGRFAM: polar amino acid ABC transporter, inner
membrane subunit;
PFAM: binding-protein-dependent transport systems inner
membrane component;
KEGG: rsp:RSP_1748 ABC
glutamate/glutamine/aspartate/asparagine transporter,
inner membrane subunit BztB"
/codon_start=1
/transl_table=11
/product="polar amino acid ABC transporter inner membrane
subunit"
/protein_id="YP_001042282.1"
/db_xref="GI:126461168"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR010065"
/db_xref="GeneID:4895729"
/translation="MANVADAPKDSFRLSMLLYDTRYRSLTIQVFVFFLFMAGAAWLV
DNTMRNLEALGKDFDFGFLWNRAGYDISQRLVDYTNDSTHGRAMLVGLLNTLLIALLG
CMAATVIGVLVGVLRLSRNWIVGRLMTVYVEVFRNVPLLLWILLIYAVFSEATPAPNA
FRPNPETGIADRSMFLDAIAVTNRYTALPNPVFSRELGWLDLGLFYVNMDVLAVIGAI
IAGWFINRSVKARATRIQEATGERPATWWSSLLLLVGLPVAVLLALGFHLEFPELRGF
NFVGGLNVSNSFMALWLALSLYTGAFIAEIVRGGILAVSRGQSEAAFALGLRPGRTMN
LVILPQALRVIIPPLISQYLNLTKNSSLAIAVGYLDLRGTLGGITLNQTGRELECVLL
MMLIYLAISLVISGVMNVYNSAVKLKER"
misc_feature 407064..408314
/locus_tag="Rsph17029_0394"
/note="ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism]; Region:
BatB; COG4597"
/db_xref="CDD:34232"
misc_feature 407370..>407510
/locus_tag="Rsph17029_0394"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature 407454..407498
/locus_tag="Rsph17029_0394"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature <407877..408269
/locus_tag="Rsph17029_0394"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(407925..407927,408144..408146,408183..408185,
408192..408194,408222..408224)
/locus_tag="Rsph17029_0394"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(407943..407948,407952..407954,407958..407960,
407967..407972,407976..407978,407988..407993,
408000..408002,408051..408053,408093..408098,
408105..408107,408126..408137,408144..408149,
408189..408194,408222..408227,408234..408239,
408243..408248,408255..408260,408267..408269)
/locus_tag="Rsph17029_0394"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(408003..408041,408057..408062,408072..408074)
/locus_tag="Rsph17029_0394"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 408319..409647
/locus_tag="Rsph17029_0395"
/db_xref="GeneID:4895676"
CDS 408319..409647
/locus_tag="Rsph17029_0395"
/note="TIGRFAM: polar amino acid ABC transporter, inner
membrane subunit;
PFAM: binding-protein-dependent transport systems inner
membrane component;
KEGG: rsp:RSP_1749 ABC
glutamate/glutamine/aspartate/asparagine transporter,
inner membrane subunit BztC"
/codon_start=1
/transl_table=11
/product="polar amino acid ABC transporter inner membrane
subunit"
/protein_id="YP_001042283.1"
/db_xref="GI:126461169"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR010065"
/db_xref="GeneID:4895676"
/translation="MSDTHAQTVPFVRETMLPPVAPPANEAGVVSWMRQNLFSGPLNI
ALTLLGLVAIYYVLEGIVPWLMRSVWTADTLAQCRQIITERWGEGATGACWAVIRERW
PQFLYGFYPNHLYWRPTLTFLLLFVALAPILFAQVPRQMLWFSLAYPFLAFWLLWGGS
IFLPLVAAAGFLFGWLAYRLAARFGTIAAVAAAALVPVLWWLFLAGDVSDDLARLTGR
TFPLWLEEVRSDKFGGFVLAVTIGVSGIALSLPLGIILALGRRSDMFLIKALSVSFIE
FIRGVPLIALLFTASLLLNYFLPPGTTFDIILRVIIMVTLFAAAYIAEVIRGGLAALP
RGQYEAADALGLDYWKAQRLIILPQALKISIPGIVSTFIGMFKDTTLVVFVGLLDPLK
GITDAVRASTDWKGIYWEPYIFVGLIFFAFNFAMSRYSMHLERRLKTDHR"
misc_feature 409018..409626
/locus_tag="Rsph17029_0395"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 409033..409590
/locus_tag="Rsph17029_0395"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(409069..409074,409081..409086,409099..409101,
409129..409140,409144..409173,409180..409185,
409189..409191,409264..409269,409273..409275,
409279..409281,409288..409293,409297..409299,
409309..409314,409321..409323,409372..409374,
409414..409419,409426..409428,409447..409458,
409465..409470,409507..409512,409540..409545,
409552..409557,409561..409566,409573..409578,
409585..409590)
/locus_tag="Rsph17029_0395"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(409147..409191,409447..409464)
/locus_tag="Rsph17029_0395"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(409189..409191,409249..409251,409465..409467,
409501..409503,409510..409512,409540..409542)
/locus_tag="Rsph17029_0395"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(409324..409362,409378..409383,409393..409395)
/locus_tag="Rsph17029_0395"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 409660..410448
/locus_tag="Rsph17029_0396"
/db_xref="GeneID:4895924"
CDS 409660..410448
/locus_tag="Rsph17029_0396"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: rsp:RSP_1750 ABC
glutamate/glutamine/aspartate/asparagine transporter,
ATPase subunit BztD"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001042284.1"
/db_xref="GI:126461170"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:4895924"
/translation="MSEAIERAIDRSHMQVSDEVAIQISQMNKWYGSFHVLRDVNMTV
HKGERIVICGPSGSGKSTLIRCINRLEEHQSGQIVVDGIELTSDLKNIDKVRSEVGMV
FQHFNLFPHLTILENCTLAPIWVRKTPKKEAEEVAMHYLKKVKIPEQAHKYPGQLSGG
QQQRVAIARSLCMKPRIMLFDEPTSALDPEMIKEVLDTMIELAEEGMTMLCVTHEMGF
AQAVANRVIFMDQGQIVEQNEPGEFFRNPKSERTKLFLSQILGH"
misc_feature 409723..410439
/locus_tag="Rsph17029_0396"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature 409723..410361
/locus_tag="Rsph17029_0396"
/note="ATP-binding cassette domain of the histidine and
glutamine transporters; Region: ABC_HisP_GlnQ; cd03262"
/db_xref="CDD:213229"
misc_feature 409819..409842
/locus_tag="Rsph17029_0396"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213229"
misc_feature order(409828..409833,409837..409845,409969..409971,
410200..410205,410299..410301)
/locus_tag="Rsph17029_0396"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213229"
misc_feature 409960..409971
/locus_tag="Rsph17029_0396"
/note="Q-loop/lid; other site"
/db_xref="CDD:213229"
misc_feature 410128..410157
/locus_tag="Rsph17029_0396"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213229"
misc_feature 410188..410205
/locus_tag="Rsph17029_0396"
/note="Walker B; other site"
/db_xref="CDD:213229"
misc_feature 410212..410223
/locus_tag="Rsph17029_0396"
/note="D-loop; other site"
/db_xref="CDD:213229"
misc_feature 410287..410307
/locus_tag="Rsph17029_0396"
/note="H-loop/switch region; other site"
/db_xref="CDD:213229"
gene 410658..411026
/locus_tag="Rsph17029_0397"
/db_xref="GeneID:4895836"
CDS 410658..411026
/locus_tag="Rsph17029_0397"
/note="PFAM: ferredoxin;
KEGG: rsp:RSP_1751 putative 2Fe-2S ferredoxin protein"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_001042285.1"
/db_xref="GI:126461171"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR006058"
/db_xref="GeneID:4895836"
/translation="MANITFTSPIMHGPKTVYAVAGDTKTILAVAEEHRIPIPFDCKD
GNCASCLIEVTYEEPSLRKGITLTEKEKAKLRELGKITAQEIQDAEVLDLPPRYRLAC
QFIARDENVTVAFSGEPGGA"
misc_feature 410691..410984
/locus_tag="Rsph17029_0397"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature order(410769..410774,410781..410783,410790..410792,
410796..410807,410958..410963)
/locus_tag="Rsph17029_0397"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature order(410781..410783,410796..410798,410805..410807,
410961..410963)
/locus_tag="Rsph17029_0397"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene 411333..412538
/locus_tag="Rsph17029_0398"
/db_xref="GeneID:4896280"
CDS 411333..412538
/locus_tag="Rsph17029_0398"
/note="PFAM: creatinase; peptidase M24;
KEGG: rsp:RSP_1752 putative creatinase"
/codon_start=1
/transl_table=11
/product="peptidase M24"
/protein_id="YP_001042286.1"
/db_xref="GI:126461172"
/db_xref="InterPro:IPR000587"
/db_xref="InterPro:IPR000994"
/db_xref="GeneID:4896280"
/translation="MERPENYRFHNGEKAALPFPPEEYEARLEGLRDLMELHSLDAVV
LTSMHNVAYYSGFLYLSFGRPYACVVTPTDCVTVSAGIDGGQPWRRSVGDNITYTDWQ
RDNFWRTVAQVTGTGRAIGCEADHLTMVQAEKLNAFLRPTRGMDIAPGTMAQRMLKSP
AEIALIRHGAQVADVGGYAIREAIREGATELEIAMVGRDAMEREIAARFPEAEYRDSW
VWFQSGPNTDGAHNPVTNRALRRGDILSLNCFPMISGYYTALERTLFLGEVDDASLKI
WEANVAAHEYGISLLQPGASCADVTAKLNAFLEERDLLRYRTFGYGHSFGLLSHYYGR
EAGLELREDIETVLEPGMVISMEPMLTLGAGQPGAGGYREHDILVITEDGPENITGYP
YGPGFNVVG"
misc_feature 411375..412511
/locus_tag="Rsph17029_0398"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 411411..411800
/locus_tag="Rsph17029_0398"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 411819..412502
/locus_tag="Rsph17029_0398"
/note="Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes
creatine to sarcosine and urea; Region: Creatinase;
cd01090"
/db_xref="CDD:29975"
misc_feature order(412023..412025,412074..412076,412107..412109,
412299..412301,412401..412403,412455..412457)
/locus_tag="Rsph17029_0398"
/note="active site"
/db_xref="CDD:29975"
gene 412777..414948
/locus_tag="Rsph17029_0399"
/db_xref="GeneID:4896082"
CDS 412777..414948
/locus_tag="Rsph17029_0399"
/note="KEGG: rsp:RSP_1753 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042287.1"
/db_xref="GI:126461173"
/db_xref="GeneID:4896082"
/translation="MSMKLAGMTSALALAAAAPVLAETSFNRIATFATTANMAAGEDT
SRPTSAEIVSVSEDGLTLIYTDSPLGVVGLIDITDPEAPKPLGTIAMGGEPTTAVIAG
ARAYVAVNTSESYTAPSGKLVTVDLESREEVASCDLGGQPDSVAKAPDGSFLAIAIEN
ERDEEVNDGVLPQMPAGFLVKLPLTEAGADCAALERIDLTGLAAIAPEDPEPEFVSVN
EAGDIAVTLQENNEVVIVAADGTISHFPAGTVDLDGIDTKKDGRLSFTDRQEGRLREP
DGIKWIGTDHLATANEGDWNGGARGWTIFSRDGQVVWEAGASLERAIAAIGHYPEHRS
KSKGVEVESVEVASFGGTPLAFVASERASVVAVYDLTDPSAPRLLQILPSGISPEGVV
AIPGRDLLVTANEADLREDGGAPAHVMIYRRGEGPAAYPTLTSEGSDPLIGWGALSAL
AADARTQGQLWAVSDSVYSMAPKIYRIDATATPARITEAIPVTRMGQPAQKLDLEGIA
TDGEGGFWLASEGSSAKLVPHAIYHVDGKGRIDEEIPFPAGLLAGETRFGLEGIAKVG
DVLWMAVQREWKDDPKGQVKLLAYDLKEESWGAVRYPLDAPAEGAWMGLSELTVHGDW
AWLIERDNRVADAGAAKRLTRVALSDLKPAPLGSELPLVKKEVVRDLVPDLQRLNGYV
LDKVEGFAIDAAGTGYFVTDNDGTDDASGETLFWSVDQLPE"
misc_feature 414052..414921
/locus_tag="Rsph17029_0399"
/note="Esterase-like activity of phytase; Region:
Phytase-like; pfam13449"
/db_xref="CDD:205627"
gene 415323..416132
/locus_tag="Rsph17029_0400"
/db_xref="GeneID:4896016"
CDS 415323..416132
/locus_tag="Rsph17029_0400"
/note="PFAM: ErfK/YbiS/YcfS/YnhG family protein;
KEGG: rsp:RSP_1754 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ErfK/YbiS/YcfS/YnhG family protein"
/protein_id="YP_001042288.1"
/db_xref="GI:126461174"
/db_xref="InterPro:IPR005490"
/db_xref="GeneID:4896016"
/translation="MRHVRSIGFPAPPDGLIVTSRILSYALMALLPFLAACAQAPAPE
TPKEHPLYPGIQDGEFFIEPVPTRYLTPDTVRQEVAYNGPEKPGTIVVDTFARRLYYV
TDEGRAMRYAIAVGRAGLAFRGNAKVQRKREWPSWQPTANMIRTQPEMYAPYAAGLPG
GLQNPLGARALYLYRGGRDTMFRIHGTVQNASIGHATSAGCIRLFNQDAIDLYGRVNL
GTPVKVRTEAESLALEGQFHDDRYGRIAPGPAEPLTEEERILLSGVPAQTR"
misc_feature <415515..415994
/locus_tag="Rsph17029_0400"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: ErfK; COG1376"
/db_xref="CDD:31566"
misc_feature <415851..415994
/locus_tag="Rsph17029_0400"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:202749"
gene complement(416178..416519)
/locus_tag="Rsph17029_0401"
/db_xref="GeneID:4896217"
CDS complement(416178..416519)
/locus_tag="Rsph17029_0401"
/note="PFAM: protein of unknown function DUF861, cupin_3;
KEGG: rsp:RSP_1755 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001042289.1"
/db_xref="GI:126461175"
/db_xref="InterPro:IPR008579"
/db_xref="GeneID:4896217"
/translation="MSHLIRLNREAVAPEIERPAPDRLIAGDPVHTTWNLEERDGLFC
GIWQSTPGKWRVRYEEWEYIRILEGHSILTSAAGEAVTLRAGDSWIIRPGFEGTWEVI
ETTVKDYVIRL"
misc_feature complement(416181..416510)
/locus_tag="Rsph17029_0401"
/note="Predicted enzyme of the cupin superfamily [General
func 