LOCUS NC_009633 4929566 bp DNA circular BCT 27-SEP-2012
DEFINITION Alkaliphilus metalliredigens QYMF chromosome, complete genome.
ACCESSION NC_009633
VERSION NC_009633.1 GI:150387853
DBLINK Project: 58171
BioProject: PRJNA58171
KEYWORDS .
SOURCE Alkaliphilus metalliredigens QYMF
ORGANISM Alkaliphilus metalliredigens QYMF
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Alkaliphilus.
REFERENCE 1 (bases 1 to 4929566)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
Fields,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Alkaliphilus metalliredigens QYMF
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4929566)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4929566)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
Fields,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000724.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634496
Source DNA and bacteria available from Matthew Fields
(matthew.fields@erc.montana.edu)
Contacts: Matthew Fields (matthew.fields@erc.montana.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4929566
/organism="Alkaliphilus metalliredigens QYMF"
/mol_type="genomic DNA"
/strain="QYMF"
/db_xref="taxon:293826"
gene 50..1396
/gene="dnaA"
/locus_tag="Amet_0001"
/db_xref="GeneID:5314968"
CDS 50..1396
/gene="dnaA"
/locus_tag="Amet_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_001317903.1"
/db_xref="GI:150387854"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:5314968"
/translation="MHDNLPQIWEKAINLIKTELTEVSFNTWVKPIQAISLDNETLVL
GVPNDFTQGILNARYNTLISNAVKQVTSKNYEVHIVVPSEERVGDTQNINARRSNAQS
PIMGNSPLILNPKYTFDTFVIGNSNRFAHAASVAVAESPAKAYNPLFIYGGVGLGKTH
LMNAIGHYILANNPKAKVVYVSSETFTNELINSIRDDRNVEFRNRYRNVDVLLVDDIQ
FIAGKERTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQP
PDLETRIAILRKKAQMENIYVPDEVTAHIAKKIQSNIRELEGALIRIVAYSSLTNSEV
TVELASEALKEIFTSKPRLLNVPLIKEVVSNHFSIKLEDFDSKKRTRSISYPRQVAMY
LTRELTDLSLPKIGDEFGGRDHTTVMHAHSKIVNEINSDSDLKNKLDAIIKELKSD"
misc_feature 59..1390
/gene="dnaA"
/locus_tag="Amet_0001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 71..256
/gene="dnaA"
/locus_tag="Amet_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 428..859
/gene="dnaA"
/locus_tag="Amet_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 503..526
/gene="dnaA"
/locus_tag="Amet_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(506..529,692..694,794..796)
/gene="dnaA"
/locus_tag="Amet_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 680..697
/gene="dnaA"
/locus_tag="Amet_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 830..832
/gene="dnaA"
/locus_tag="Amet_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1121..1384
/gene="dnaA"
/locus_tag="Amet_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1184..1186,1208..1213,1232..1234,1250..1258,
1283..1297,1304..1306,1313..1318)
/gene="dnaA"
/locus_tag="Amet_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1629..2735
/locus_tag="Amet_0002"
/db_xref="GeneID:5310028"
CDS 1629..2735
/locus_tag="Amet_0002"
/EC_number="2.7.7.7"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_001317904.1"
/db_xref="GI:150387855"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:5310028"
/translation="MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRL
VGTDLEIGIEHVMEADVLQEGIVVVDARLFSEIIRKLPDAEVDITLKENNQLEIKCAS
TEFNILVYSPDEFPELPIVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLME
IEENTLNMVALDGYRLALRKGKISGNSNHKVVVPAKTLNEVNRILNPDEEEPLHITLT
NNHALFTAGKTKLISRLLEGEFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEG
RNNLVRFVVNDEKMVITSNSELGKVHEEINIVLEGEDIEIAFNSKYFIDALKVIDDEE
VCLEFTTNLSPGILKPLANENYTYLVLPVRLASN"
misc_feature 1629..2723
/locus_tag="Amet_0002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1629..2720
/locus_tag="Amet_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1698..1700,1842..1844,1863..1865,2214..2216)
/locus_tag="Amet_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1845..1847,1854..1856,1932..1934,1938..1940,
2439..2441,2532..2537)
/locus_tag="Amet_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2139..2141,2145..2156,2583..2585,2709..2720)
/locus_tag="Amet_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2139..2141,2145..2150,2364..2366,2472..2474,
2511..2516,2592..2594,2709..2720)
/locus_tag="Amet_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2819..3028
/locus_tag="Amet_0003"
/db_xref="GeneID:5310029"
CDS 2819..3028
/locus_tag="Amet_0003"
/note="PFAM: RNA-binding S4 domain protein;
KEGG: cth:Cthe_2373 RNA-binding S4"
/codon_start=1
/transl_table=11
/product="RNA-binding S4 domain-containing protein"
/protein_id="YP_001317905.1"
/db_xref="GI:150387856"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:5310029"
/translation="MLKEVKIEGEYIKLDQILKLGELVGSGGQAKLLILNGEVKVNGN
IVIQRGKKIRPGDIVELFDDKVKVI"
misc_feature 2852..3022
/locus_tag="Amet_0003"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(2855..2857,2891..2896,2900..2905,2909..2914,
2921..2926,2930..2932,2951..2974,2978..2980)
/locus_tag="Amet_0003"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 3115..4221
/gene="recF"
/locus_tag="Amet_0004"
/db_xref="GeneID:5310030"
CDS 3115..4221
/gene="recF"
/locus_tag="Amet_0004"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001317906.1"
/db_xref="GI:150387857"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:5310030"
/translation="MIIEGLKLINFRNYEQLQLQLHPKLNIFVGENAQGKTNVLEAVY
LSAIGKSFRTSKDQEMIFVDKHQAYVQVKVKRVVYENNIELRLNVDKKKNIKVNQVPL
LKLGELLGNLNIVLFSPEDLKIIKEGPGERRKFIDGEISQIAPKYYYNLNQYNKILQQ
RNKLLKYHKGKKLDLEVWNEQLANIGASLIIYRRNFIKRIAILAKLMHRKITDGIETL
EIEYKSSVLIKDHDTVDQIRVGFLKELNQSADEERRRGVTLVGPHRDDLNFNINGLEV
KTYGSQGQQRTAVLSLKLAELELIKGEVGEYPVLLLDDVMSELDMKRQNDLIYHLKHV
QTLVTTTMLEPLNIKNVQDKALFRVIKGEIGKYE"
misc_feature 3115..4206
/gene="recF"
/locus_tag="Amet_0004"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 3121..>3612
/gene="recF"
/locus_tag="Amet_0004"
/note="RecF is a recombinational DNA repair ATPase that
maintains replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication...; Region: ABC_RecF;
cd03242"
/db_xref="CDD:73001"
misc_feature 3202..3225
/gene="recF"
/locus_tag="Amet_0004"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73001"
misc_feature order(3211..3216,3220..3228,3418..3420)
/gene="recF"
/locus_tag="Amet_0004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73001"
misc_feature 3409..3420
/gene="recF"
/locus_tag="Amet_0004"
/note="Q-loop/lid; other site"
/db_xref="CDD:73001"
misc_feature <3814..4206
/gene="recF"
/locus_tag="Amet_0004"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3952..3981
/gene="recF"
/locus_tag="Amet_0004"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 4039..4056
/gene="recF"
/locus_tag="Amet_0004"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 4063..4074
/gene="recF"
/locus_tag="Amet_0004"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 4126..4146
/gene="recF"
/locus_tag="Amet_0004"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 4310..4597
/locus_tag="Amet_0005"
/db_xref="GeneID:5310031"
CDS 4310..4597
/locus_tag="Amet_0005"
/note="KEGG: cth:Cthe_2375 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317907.1"
/db_xref="GI:150387858"
/db_xref="GeneID:5310031"
/translation="MFLHLGGEIAVHSSEVIAILDIESTLKSKDSKAFLKICKEKGFI
HKITNEEPRSFVITEKQEHLAKSGNRIRKLVIYYSPISAPTLQKRAAFIPE"
gene 4652..6559
/locus_tag="Amet_0006"
/db_xref="GeneID:5310032"
CDS 4652..6559
/locus_tag="Amet_0006"
/EC_number="5.99.1.3"
/note="KEGG: gka:GK0005 DNA gyrase subunit B;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase, subunit B domain protein; ATP-binding
region, ATPase domain protein; TOPRIM domain protein; DNA
topoisomerase, type IIA, subunit B, region 2 domain
protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_001317908.1"
/db_xref="GI:150387859"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:5310032"
/translation="MENKIQEYGAEQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYE
VVDNSVDEALAGYCDVIDVTIYQDNSIKVVDNGRGIPIETHPQTGKSTLETVMTVLHA
GGKFGGGGYKVSGGLHGVGISVVNALSEYVEVEVRKDGKLYKQRYERGIPITDVQEVG
ETTETGTTITFKADSEIFEEILYVYTTLENRLREMAFLNKGIKITLRDLREEEVMESS
FRYDGGIQEFVMHLNRNREALIDKVIYFEKQKEGSVVEVALQYTGAYTENIFSYANTI
NTHEGGTHLSGFKAGLTRVINEYARKNGILKEKEINLLGEDIREGLTAIISVKMADPQ
FEGQTKTKLGNSEMKGIVESSTSQYLEAFLEENPHEAKIIIEKSLRAQRAREAAKKAR
ELTRRKGALENTALPGKLADCAEKDPALSEIYIVEGNSAGGSAKQGRDRATQAILPLR
GKILNVEKSRLDRILGSAEIRNMITAFGTGIGIEFDIEKVRYHKIVIMTDADVDGAHI
RTLLLTFFFRYMKPLIELGYVYIAQPPLYKLKKGKVENYAYSDEEMQKIIVQMGGSAD
IQRYKGLGEMNPEQLWDTTMNPETRTFLQVSIEDAAGADDIFNTLMGDKVEPRRQFIE
QNSKYVTNLDI"
misc_feature 4652..6556
/locus_tag="Amet_0006"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:180181"
misc_feature 4763..>4912
/locus_tag="Amet_0006"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 4793..4795
/locus_tag="Amet_0006"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(4880..4882,4886..4888)
/locus_tag="Amet_0006"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 5318..5782
/locus_tag="Amet_0006"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 5471..5473
/locus_tag="Amet_0006"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(5645..5647,5654..5659,5663..5665)
/locus_tag="Amet_0006"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(5663..5665,5669..5671)
/locus_tag="Amet_0006"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 5912..6253
/locus_tag="Amet_0006"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5930..5935,5942..5944,6149..6151,6155..6157,
6161..6163)
/locus_tag="Amet_0006"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5930..5932,6149..6151)
/locus_tag="Amet_0006"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 6335..6523
/locus_tag="Amet_0006"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6576..9068
/locus_tag="Amet_0007"
/db_xref="GeneID:5310033"
CDS 6576..9068
/locus_tag="Amet_0007"
/EC_number="5.99.1.3"
/note="TIGRFAM: DNA gyrase, A subunit;
PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase
C-terminal repeat, beta-propeller;
KEGG: chy:CHY_2704 DNA gyrase, A subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_001317909.1"
/db_xref="GI:150387860"
/db_xref="InterPro:IPR001360"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005743"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:5310033"
/translation="MIDNKDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPV
HRRILYSMIELGVTPDKPHKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLL
VDGHGNFGSVDGDGAAAMRYTEARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLP
SRFPNLLVNGSNGIAVGMATNIPPHNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFP
TGGIILGTEGIKDAYTTGRGKIKVRAKASIEEMSKGRQHIIVNEIPYQVNKARLIEKI
AELVRDKKIEGISDLRDESDREGMRIVIELKRDANANVVLNKLYKHTQLEDTFGVIMI
AIVDGQPKVLNLKEVLTHYLNHQKDIIVRRTKFDLNKAEDRAHILEGLKIALDNLDEV
IKLIRGSDNTQIAKAGLMEKFSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKII
NHLKEILANERLLLDIIKEELLEIREKYADKRRTEIAIDPGSINMIDLVDEEDVVITL
THFGYIKRLPIDTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYK
LNVYEIPEGRRQAKGTAIVNLLQLSANEKIAAVIPVDRDCNEQYLVMATQKGIIKKTE
LCQFDNTRKTGLMAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDMGRT
AMGVKGINLAEKDYVVAMEVLEDNKDLLVVSENGLGKRTDLSEYRLQTRGGKGIKTYK
VSKKTGNLIGAKIVEDHDEILLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSI
VSIAQIPYHEEVIIQEMIEEISEEKDEEKDEE"
misc_feature 6585..8990
/locus_tag="Amet_0007"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 6663..7952
/locus_tag="Amet_0007"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(6663..6746,6759..6908,6912..6968,6972..7043,
7050..7052)
/locus_tag="Amet_0007"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 6939..6941
/locus_tag="Amet_0007"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(7734..7742,7749..7760,7791..7796,7836..7886)
/locus_tag="Amet_0007"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 8082..8225
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8238..8384
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8400..8537
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8544..8681
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8694..8840
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8847..8990
/locus_tag="Amet_0007"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 9333..9650
/locus_tag="Amet_0008"
/db_xref="GeneID:5310034"
CDS 9333..9650
/locus_tag="Amet_0008"
/note="TIGRFAM: anti-anti-sigma factor;
PFAM: Sulfate transporter/antisigma-factor antagonist
STAS;
KEGG: cth:Cthe_2898 anti-sigma-factor antagonist"
/codon_start=1
/transl_table=11
/product="anti-sigma-factor antagonist"
/protein_id="YP_001317910.1"
/db_xref="GI:150387861"
/db_xref="InterPro:IPR002645"
/db_xref="InterPro:IPR003658"
/db_xref="GeneID:5310034"
/translation="MSLSVNKQFNDEENLWTVQLAGEVDIYTAGQLKEAFIKMIEERK
ETIKIDCEELVYIDSTGLGVLIGALKRLKQEKKEIMLFNIKPSIKKLLNITGLDKIFI
IEG"
misc_feature 9366..9641
/locus_tag="Amet_0008"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist) domain of anti-anti-sigma factors, key
regulators of anti-sigma factors by phosphorylation;
Region: STAS_anti-anti-sigma_factors; cd07043"
/db_xref="CDD:132914"
misc_feature <9369..9629
/locus_tag="Amet_0008"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:31004"
misc_feature order(9399..9401,9405..9413,9429..9431,9498..9500,
9504..9512,9516..9524,9531..9536,9600..9602,9612..9617,
9621..9623)
/locus_tag="Amet_0008"
/note="anti sigma factor interaction site; other site"
/db_xref="CDD:132914"
misc_feature 9507..9509
/locus_tag="Amet_0008"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:132914"
gene 9691..10116
/locus_tag="Amet_0009"
/db_xref="GeneID:5310035"
CDS 9691..10116
/locus_tag="Amet_0009"
/note="KEGG: bcl:ABC0815 anti-sigma B factor"
/codon_start=1
/transl_table=11
/product="putative anti-sigma regulatory factor"
/protein_id="YP_001317911.1"
/db_xref="GI:150387862"
/db_xref="GeneID:5310035"
/translation="MNEKKNDEIKLTIPNKPEYVSVVRLTVSSIANRMGFDVEQIEDI
KIATAEACTNAITHGKCDVEESFDIKFIIDEGKLVISVFDNGKGCMINNIKKPDLINP
KEGGLGIFIIKSLMDDVKITSDADKGTTIIMTKYVGEDT"
misc_feature 9727..10095
/locus_tag="Amet_0009"
/note="Histidine kinase-like ATPase domain; Region:
HATPase_c_2; pfam13581"
/db_xref="CDD:205759"
misc_feature 9820..10092
/locus_tag="Amet_0009"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(9838..9840,9850..9852,9859..9861,9934..9936,
9940..9942,9946..9948,9952..9954,9961..9963,10006..10017,
10051..10053,10057..10059,10072..10077,10081..10083)
/locus_tag="Amet_0009"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 9850..9852
/locus_tag="Amet_0009"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(9946..9948,9952..9954,10006..10008,10012..10014)
/locus_tag="Amet_0009"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 10116..10916
/locus_tag="Amet_0010"
/db_xref="GeneID:5310036"
CDS 10116..10916
/locus_tag="Amet_0010"
/note="TIGRFAM: phage transcriptional regulator, RinA
family; RNA polymerase sigma-70; RNA polymerase
sigma-B/F/G type;
PFAM: sigma-70 region 3 domain protein; sigma-70 region 2
domain protein; sigma-70 region 4 domain protein;
KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit"
/codon_start=1
/transl_table=11
/product="RinA family phage transcriptional regulator"
/protein_id="YP_001317912.1"
/db_xref="GI:150387863"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR006523"
/db_xref="InterPro:IPR007624"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR014284"
/db_xref="InterPro:IPR014322"
/db_xref="GeneID:5310036"
/translation="MKNIARANKMALNRDHSLMHLTEKELFIEYQENKKVEVRNELVN
RYLYIAEILSKKFLNKGIDYEDIYQVASLGLIYAIERFDLSRGFEFSSFATPTIIGEI
KKHFRDKGWSIRVPRRIQELSKKVNTAKMTLHQNLQRTPMIKDIAEYLNCTQEEVMEA
MEASQVYTPKSLDLTYDNDGEDKDIQLIDLIGEKDKNFDEIENRDFLKKAMRNLNEVE
KKVLEDRFFNSKTQMNVAEELNVSQMTVSRMEKRIIEKFRKELNKSME"
misc_feature 10221..10901
/locus_tag="Amet_0010"
/note="RNA polymerase sigma-70 factor, sigma-B/F/G
subfamily; Region: SigBFG; TIGR02980"
/db_xref="CDD:200225"
misc_feature 10278..10448
/locus_tag="Amet_0010"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 10476..10688
/locus_tag="Amet_0010"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature 10734..10889
/locus_tag="Amet_0010"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(10758..10760,10788..10790,10806..10811,10839..10841,
10845..10850,10854..10862,10866..10871,10875..10877)
/locus_tag="Amet_0010"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 11329..12849
/locus_tag="Amet_R0001"
/db_xref="GeneID:5310037"
rRNA 11329..12849
/locus_tag="Amet_R0001"
/product="16S ribosomal RNA"
/db_xref="GeneID:5310037"
gene 13209..16143
/locus_tag="Amet_R0002"
/db_xref="GeneID:5310038"
rRNA 13209..16143
/locus_tag="Amet_R0002"
/product="23S ribosomal RNA"
/db_xref="GeneID:5310038"
gene 16271..16386
/locus_tag="Amet_R0003"
/db_xref="GeneID:5310039"
rRNA 16271..16386
/locus_tag="Amet_R0003"
/product="5S ribosomal RNA"
/db_xref="GeneID:5310039"
gene 16755..16907
/locus_tag="Amet_0011"
/db_xref="GeneID:5310040"
CDS 16755..16907
/locus_tag="Amet_0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317913.1"
/db_xref="GI:150387864"
/db_xref="GeneID:5310040"
/translation="MITLYKDNQDNKIIDINEYREKKNKKIEKEIEEREKTLNLFMKV
LSTMRE"
gene 17117..17344
/locus_tag="Amet_0012"
/db_xref="GeneID:5310041"
CDS 17117..17344
/locus_tag="Amet_0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317914.1"
/db_xref="GI:150387865"
/db_xref="GeneID:5310041"
/translation="MMKGYDIMYNHSDTPIAEDFQQLYEQGYRCIYYELHEKDQFFIA
HLKNFENEDIRELKCSIEDGTNLKNYIDNLN"
gene 17548..18012
/locus_tag="Amet_0013"
/db_xref="GeneID:5310042"
CDS 17548..18012
/locus_tag="Amet_0013"
/note="PFAM: protein of unknown function DUF988;
KEGG: ctc:CTC02339 transporter"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317915.1"
/db_xref="GI:150387866"
/db_xref="InterPro:IPR010387"
/db_xref="GeneID:5310042"
/translation="MKQTKMLVQGAIIAGLYVALTLAFAPISFLQVQVRISEVLTILP
VFTPAAIPGLFVGVLIANMFGGLGIIDIVLGSLATLTAAYLSRKMPRRWLVPLPPVVI
NAVVVAFILNYVLGFPYVATMGWVAIGQIIACYGLGYPFMLVLDKYKDNIFK"
misc_feature 17563..17997
/locus_tag="Amet_0013"
/note="QueT transporter; Region: QueT; pfam06177"
/db_xref="CDD:148027"
gene 18180..19043
/locus_tag="Amet_0014"
/db_xref="GeneID:5310043"
CDS 18180..19043
/locus_tag="Amet_0014"
/note="KEGG: tma:TM1086 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317916.1"
/db_xref="GI:150387867"
/db_xref="GeneID:5310043"
/translation="MIQINKAKLVMQSVQGKIHSPQGANPYRIDREGVGHILPATGGI
TYNVKIGDSCMEWIGDHVEPGVSIRNEDKMENNALMILSCIGNEARVVTGEAKGAKGY
VTGMHGGIDHVLIHFKEEDMEKMAINDTILIKAFGQGLAIEGLDDVKCMNIDPGLFEK
LDIKINPEGYLEIPVKTEVPAYMMGSGIGGATAYSGDYDIMTGDKDANREFGINELKF
GDLVLLRDCDNTYGRQYLKGAVSIGIVVHSDCIKSGHGPGITVIMSSKKPIIKAIINK
EANISNYLQIK"
gene 19183..20526
/locus_tag="Amet_0015"
/db_xref="GeneID:5310044"
CDS 19183..20526
/locus_tag="Amet_0015"
/EC_number="1.4.4.2"
/note="PFAM: glycine cleavage system P-protein;
KEGG: tte:TTE0294 Glycine cleavage system protein P
(pyridoxal-binding), N-terminal domain"
/codon_start=1
/transl_table=11
/product="glycine dehydrogenase"
/protein_id="YP_001317917.1"
/db_xref="GI:150387868"
/db_xref="InterPro:IPR003437"
/db_xref="GeneID:5310044"
/translation="MFPYIPATEESKKKMLEDVGLNSVEDLFKDISHKVRLKGELNIP
KHKSELEVSSYIKKLGKMNETTEDYTCFLGCGAYDHYIPSVVDAVISRSEYYTAYTPY
QAEIAQGTLQTIFEFQSMMAGLTGMDVCNASVYDGSTAVYEAAYVAVASNRRKEVLIS
KSVHPEYRKVLKASLGAANIKYIEIEIKEGTTDLDDLKEKLTKDVSAVIVQSPNFFGL
IEEVEEVVKESHENKSLVVMSTDPISLGLLKTPGEMGVDIAIGEAQALGIPLSFGGPY
LGFITTTKALLRKVPGRLVGMTKDVDGKRGFVLTLQTREQHIRREKSISNICTNQALN
ATAATVYLSLMGKEGMKEVAKQNYDKAHYAHEQLISTGMFEDSWEKPFFKEFTLKYKG
NLKALKEKLEENKILGGFHPKEDYQALENHLIIAVTEKRSKEEVDQLCTIVKEVE"
misc_feature 19183..20520
/locus_tag="Amet_0015"
/note="glycine dehydrogenase subunit 1; Validated; Region:
PRK00451"
/db_xref="CDD:179033"
misc_feature 19327..20502
/locus_tag="Amet_0015"
/note="Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian and
plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1; Region: GDC-P;
cd00613"
/db_xref="CDD:99737"
misc_feature order(19327..19332,19342..19350,19357..19371,19408..19410,
19414..19416,19420..19434,19441..19443,19450..19452,
19471..19479,19483..19491,19495..19497,19504..19512,
19516..19518,19600..19605,19633..19635,19669..19680,
19687..19692,19696..19701,19732..19734,19837..19839,
19972..19974,19987..20007,20173..20181,20197..20199,
20209..20214,20236..20238,20245..20247,20260..20262,
20266..20268,20290..20292,20323..20325,20389..20391,
20467..20472,20479..20484)
/locus_tag="Amet_0015"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99737"
misc_feature order(19405..19407,19597..19602,19609..19611,19672..19674,
19678..19680,19897..19899,19966..19968,19972..19977)
/locus_tag="Amet_0015"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99737"
misc_feature 19975..19977
/locus_tag="Amet_0015"
/note="catalytic residue [active]"
/db_xref="CDD:99737"
gene 20526..21971
/locus_tag="Amet_0016"
/db_xref="GeneID:5310045"
CDS 20526..21971
/locus_tag="Amet_0016"
/EC_number="1.4.4.2"
/note="acts in conjunction with GvcH to form
H-protein-S-aminomethyldihydrolipoyllysine from glycine;
forms a heterodimer with subunit 1 to form the P protein"
/codon_start=1
/transl_table=11
/product="glycine dehydrogenase subunit 2"
/protein_id="YP_001317918.1"
/db_xref="GI:150387869"
/db_xref="InterPro:IPR003437"
/db_xref="GeneID:5310045"
/translation="MYEKVIYEISSKGKKGYMLPPQDVPQYEVPEKYLRKTDNHLPEV
SEREVMSHFVNISSKNYHIDKGFYPLGSCTMKYNPKINEAMARLDGLANIHPYQDEKM
VQGALRLMYELQGSLGEITGMDAFTLQPAAGAHGEKTGLMLMHQYHRGRNDLKRDKII
VPDSSHGTNPASAAMTGFKIIEVPSNERGGVDIEALKNVVGDDTAGLMLTNPSTLGLF
EENITEIAGIIHGAGGLLYYDGANMNAIMGYARPGDMGFDIIHLNLHKTFTTPHGGGG
PGAGPVGVKEFLKEFLPVPMIDKKDETYTLRYDMENSIGKVKSFYGNFGMLIRAYTYI
LTMGSDGLKHVSEMAVLNANYLKENLKEYYQLPYDILCKHEFVLSGKSMKKKYGVSTM
DIAKRLIDYGYHPPSVYFPLIVEEAIMIEPTETESKETLDEFIKVMITIAKEAAENPD
LLHEAPHHSPVRRLDDSGAARNPILKWQDIE"
misc_feature 20532..21965
/locus_tag="Amet_0016"
/note="Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism]; Region: GcvP; COG1003"
/db_xref="CDD:31207"
misc_feature 20661..21839
/locus_tag="Amet_0016"
/note="Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian and
plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1; Region: GDC-P;
cd00613"
/db_xref="CDD:99737"
misc_feature order(20661..20666,20676..20684,20691..20705,20742..20744,
20748..20750,20754..20768,20775..20777,20784..20786,
20802..20810,20814..20822,20826..20828,20835..20843,
20847..20849,20925..20930,20958..20960,21018..21029,
21036..21041,21045..21050,21069..21071,21177..21179,
21318..21320,21336..21356,21492..21500,21516..21518,
21528..21533,21555..21557,21564..21566,21579..21581,
21585..21587,21609..21611,21636..21638,21711..21713,
21795..21800,21807..21812)
/locus_tag="Amet_0016"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99737"
misc_feature order(20739..20741,20922..20927,20934..20936,21021..21023,
21027..21029,21240..21242,21312..21314,21318..21323)
/locus_tag="Amet_0016"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99737"
misc_feature 21321..21323
/locus_tag="Amet_0016"
/note="catalytic residue [active]"
/db_xref="CDD:99737"
gene 22384..23904
/locus_tag="Amet_R0004"
/db_xref="GeneID:5310046"
rRNA 22384..23904
/locus_tag="Amet_R0004"
/product="16S ribosomal RNA"
/db_xref="GeneID:5310046"
gene 24268..27202
/locus_tag="Amet_R0005"
/db_xref="GeneID:5310047"
rRNA 24268..27202
/locus_tag="Amet_R0005"
/product="23S ribosomal RNA"
/db_xref="GeneID:5310047"
gene 27463..27578
/locus_tag="Amet_R0006"
/db_xref="GeneID:5310048"
rRNA 27463..27578
/locus_tag="Amet_R0006"
/product="5S ribosomal RNA"
/db_xref="GeneID:5310048"
gene 27844..28755
/locus_tag="Amet_0017"
/db_xref="GeneID:5310049"
CDS 27844..28755
/locus_tag="Amet_0017"
/EC_number="2.1.1.63"
/note="TIGRFAM: quinolinate synthetase complex, A subunit;
PFAM: Quinolinate synthetase A;
KEGG: cth:Cthe_2356 quinolinate synthetase complex, A
subunit"
/codon_start=1
/transl_table=11
/product="quinolinate synthetase complex subunit A"
/protein_id="YP_001317919.1"
/db_xref="GI:150387870"
/db_xref="InterPro:IPR003473"
/db_xref="GeneID:5310049"
/translation="MNETNMIDEIKRLKKEKNAVILAHNYQIPEIQEIADIVGDSLKL
SQEATKTDADIVVLSGVKFMAESVKILSPNKKVLLPAHDAGCPMADMIDVDQLKEFKA
EYPNVPVVCYVNSSAEVKAESDICCTSSNAIKVVRSLQSDKVIFVPDQNLAAYIAEQV
PEKEIIPWQGFCITHHRVKDLEVDKIRKQMPEAVFLVHPECTPDVVKKADFVGSTSQI
IQYAKESNAEKFVIGTEMGVLHKLKKENPTKKFYLLSPGLICFNMKKTTLVNVYEALR
DEQHEIIVDEYVREKALKTLNQMLEIK"
misc_feature 27862..28749
/locus_tag="Amet_0017"
/note="Quinolinate synthetase A protein; Region: NadA;
pfam02445"
/db_xref="CDD:145537"
gene 28770..30332
/locus_tag="Amet_0018"
/db_xref="GeneID:5310050"
CDS 28770..30332
/locus_tag="Amet_0018"
/EC_number="1.4.3.16"
/note="TIGRFAM: L-aspartate oxidase;
PFAM: fumarate reductase/succinate dehydrogenase
flavoprotein domain protein;
KEGG: cth:Cthe_2355 L-aspartate oxidase"
/codon_start=1
/transl_table=11
/product="L-aspartate oxidase"
/protein_id="YP_001317920.1"
/db_xref="GI:150387871"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR005288"
/db_xref="GeneID:5310050"
/translation="MKVINNTIMKNKCDVLVIGSGVAGLFTALNIDPSYTVHVITKNQ
LSKSNSTLAQGGIVSCVDSKIHYEDTMKAGCYYNNKEAVNLLGRKGYQMIQQLIEYGV
MFDRNNSGGLKMTREGGHTQFQVAHCKDETGKEIMRALSDTVSKKNNIKVREKVFALD
TIVKDGIVHGVDVLVSGKREVYESKITVLATGGIGDLYESTTNERASTGDGIAIAYRA
GANIKDMEFIQFHPTALYHQSKGKKLLISEAVRGEGGVLKNKYGEAFMGKYHKMKDLA
PRDIVARSIFYEMQRTKTSFVYLDITHLSKEFIQNRFPMIYRMCLSEQIDITKNWISV
APAAHYIMGGIETDSQGRTTVKNLYACGECARTGAHGANRLASNSLLEGVVFGKQVAD
DINQALKQLIFNEELVDNEWPLIKKHTNLSDDHKQHLELGALTRIEGRLKQTMNQYVS
ISRDGKGLIKARYVIDKLKEKLQQESNNNIKYYELINQLTVSELIIESAFRRKKSLGA
HYRLDNEINNQS"
misc_feature 28788..30308
/locus_tag="Amet_0018"
/note="Aspartate oxidase [Coenzyme metabolism]; Region:
NadB; COG0029"
/db_xref="CDD:30379"
misc_feature 28794..30005
/locus_tag="Amet_0018"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 30087..>30308
/locus_tag="Amet_0018"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene 30355..31194
/locus_tag="Amet_0019"
/db_xref="GeneID:5310051"
CDS 30355..31194
/locus_tag="Amet_0019"
/EC_number="2.4.2.19"
/note="TIGRFAM: nicotinate-nucleotide pyrophosphorylase;
PFAM: Quinolinate phosphoribosyl transferase;
KEGG: cth:Cthe_2354 nicotinate-nucleotide
pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide pyrophosphorylase"
/protein_id="YP_001317921.1"
/db_xref="GI:150387872"
/db_xref="InterPro:IPR002638"
/db_xref="InterPro:IPR004393"
/db_xref="GeneID:5310051"
/translation="MYNHLLIEDIIKNALIEDMNYGDITTDALVDGDKTGIAIITAKE
EGVIAGTSIVEMVFKLVDQTLYVTNLKQDGEKVNTGDNMIEVDGNIKSILKGERIALN
FMQRMSGIATTAREFADRVEGFNTKIVDTRKTTPGLRSLEKYAVKVGGCYNHRFNLSD
AVLIKDNHIKAVGGITEAVKRCRVQIPHTAKIEVEVESLEQLEEAIEVKADIIMLDNM
TVEMMKEAVQRTKGRALLEASGNMTKEKIKEVAATGVDFISVGLLTHSVKAMDISLNI
QMK"
misc_feature 30361..31185
/locus_tag="Amet_0019"
/note="Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism]; Region: NadC; COG0157"
/db_xref="CDD:30506"
misc_feature 30376..31179
/locus_tag="Amet_0019"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:29619"
misc_feature order(30427..30432,30643..30648,30658..30660,30748..30750,
30754..30756,30766..30771,30826..30831,30841..30843,
30847..30849,30853..30858,30865..30867,30898..30900,
31147..31149)
/locus_tag="Amet_0019"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29619"
misc_feature order(30745..30753,30814..30819,31000..31002,31069..31074,
31129..31131,31135..31140,31147..31149)
/locus_tag="Amet_0019"
/note="active site"
/db_xref="CDD:29619"
gene 31205..31723
/locus_tag="Amet_0020"
/db_xref="GeneID:5310052"
CDS 31205..31723
/locus_tag="Amet_0020"
/note="PFAM: 3H domain protein; Helix-turn-helix, type 11
domain protein;
KEGG: tte:TTE0520 hypothetical protein"
/codon_start=1
/transl_table=11
/product="3H domain-containing protein"
/protein_id="YP_001317922.1"
/db_xref="GI:150387873"
/db_xref="InterPro:IPR004173"
/db_xref="InterPro:IPR013196"
/db_xref="GeneID:5310052"
/translation="MNTQERRAVIAKRLEERKGPIKGTELAKWLQVSRQVIVQDIALL
RAEGTAVIATPQGYVILKSDKKGLTKTVVSKHENYEEMEEELQIMIDHGARVVDVIVE
HPLYGEIRGMLDISYGQELKMFMKKIRTEKAEPLSSLTYGIHIHTLEVPSEESFNKMN
QALMEKGYLINE"
misc_feature 31205..31714
/locus_tag="Amet_0020"
/note="Predicted small molecule binding protein (contains
3H domain) [General function prediction only]; Region:
COG1827"
/db_xref="CDD:32012"
misc_feature 31220..31378
/locus_tag="Amet_0020"
/note="HTH domain; Region: HTH_11; pfam08279"
/db_xref="CDD:116863"
misc_feature 31418..31714
/locus_tag="Amet_0020"
/note="3H domain; Region: 3H; pfam02829"
/db_xref="CDD:202419"
gene 31739..32788
/locus_tag="Amet_0021"
/db_xref="GeneID:5310053"
CDS 31739..32788
/locus_tag="Amet_0021"
/note="PFAM: phosphotransferase system, EIIC;
KEGG: bha:BH3254 hypothetical protein"
/codon_start=1
/transl_table=11
/product="phosphotransferase system, EIIC"
/protein_id="YP_001317923.1"
/db_xref="GI:150387874"
/db_xref="InterPro:IPR003352"
/db_xref="GeneID:5310053"
/translation="MKIREKSVSLREYLTQALNGMALGLFSSLIIGLILKQIGEILNI
TVLMEFGQIAQFLMGPAIGAGVAYAIGAPSLGIFASLITGAIGANTIFLTEVGAYGIK
VGEPVGAFVAALIGAEIAKLIAGKTKVDIVLVPAVTIIVGGLAGNFIGPWVSAMMSGL
GQLINNTTELHPIPMGIFVAILMGMILTLPISSAALAISLGLSGLAAGAAVVGCATQM
VGFAVSSYKENGFGGLIAQGLGTSMLQVPNIIRNPLIWIPPIIASGILGPLATTLFQM
ENNSIGAGMGTSGLVGQFGTFAKMVTENGNPASTVLIKMGILHFILPAIITLVIAKYM
RQKGWIKPGDMKLNQ"
misc_feature 31757..32785
/locus_tag="Amet_0021"
/note="Predicted membrane protein, putative toxin
regulator [General function prediction only]; Region:
PfoR; COG3641"
/db_xref="CDD:33439"
misc_feature 31784..32779
/locus_tag="Amet_0021"
/note="Phosphotransferase system, EIIC; Region:
PTS_EIIC_2; pfam13303"
/db_xref="CDD:205483"
gene 32891..35689
/locus_tag="Amet_0022"
/db_xref="GeneID:5310054"
CDS 32891..35689
/locus_tag="Amet_0022"
/note="PFAM: protein of unknown function UPF0182;
KEGG: swo:Swol_1161 protein of unknown function UPF0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317924.1"
/db_xref="GI:150387875"
/db_xref="InterPro:IPR000585"
/db_xref="InterPro:IPR005372"
/db_xref="GeneID:5310054"
/translation="MSEEEKELKNRKKVIIGLGIFIFIFLFGFLSEILSFITDYQWFQ
ELGYESVFLTKLKTQLQIGIPLFIVGTILYYLYLIGLKKEYYKQIKSYHMDISEKRVN
QILILPAFVFGLMTSTSVAGSLWFDILLYANAKPFNLTDPLFNNDITYYLLELPFLKQ
LLNTVTSILFLMVIITVIFYVIMFLIRRPTLYEVKADLQWNSNFFVSLLQIALKQFAA
LGVIFFLVLAARYYLGVYDLLYSTRGVVYGASYTDTHVTLWVYRAQILASLLSATGVV
YAYVKRNPKLLLIAPISIIAVGILGNVISLGVQNFIVSPNEIARELPYIEHNLSYTRR
AYGIGEIQETDFPYDTELTREDIENNQEIIDNIRINDYRPALEVYNQIQAFRPYYRFV
DVDIDRYWVNGEYRQVFIAPRELDQRELSDNAQTWINQTLKYTHGYGVALSPVNEVTS
GGQPVLWMRNFPLVSSVDIEVTRPEIYFGELTDQYIIVNTKEKEFDYPLDNDNAETLY
EGTAGVPLKGVNRLLYSWRQGTLKMLLSGNITSESRIVFDRNIVTRMNKIAPFITYDE
DPYIVINEGKLYWMIDGYTISGNFPYAEPYMAGNNNYIRNSVKVVIDAYNGTVDYYIS
DEEDPIILTYQAIFPDLFKPLDDMPEGLKAHIRYPQVLFDIQSEVYATYHMNNPRVFY
NKEDLWRIAREKYDQNEQTIESQYMMMKLPGEESEEFVISVPYTPIRLDNMRALLVAR
NDGEQYGELIAYRMPKDQNVYGPKQIEDRIDQNTTISQNLSLWGEGGSSVIRGNLLVV
PIENSLLYVEPLYIRATSGTSLPEVKMVIVSFGDQIVMEPTLEEALNRIFGARVEEIR
EEIQEEVEGDTDGETITEEITEGLGEASQLIRRASEVFDRAQEASRQGNWSAYGDALE
ELEQVLRQLQETTQVLEN"
misc_feature 33002..35626
/locus_tag="Amet_0022"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1615; cl09133"
/db_xref="CDD:186837"
misc_feature 33002..35239
/locus_tag="Amet_0022"
/note="Uncharacterized protein family (UPF0182); Region:
UPF0182; pfam03699"
/db_xref="CDD:146370"
gene complement(35753..35959)
/locus_tag="Amet_0023"
/db_xref="GeneID:5310055"
CDS complement(35753..35959)
/locus_tag="Amet_0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317925.1"
/db_xref="GI:150387876"
/db_xref="GeneID:5310055"
/translation="MKQIDIVNQLSNLKEVDYRNTLAIATLIELLIENDIITRKAFAE
KSYELDKMSLDELKEFRNRKKTTS"
gene 36527..37807
/locus_tag="Amet_0024"
/db_xref="GeneID:5310056"
CDS 36527..37807
/locus_tag="Amet_0024"
/EC_number="6.1.1.11"
/note="catalyzes a two-step reaction, first charging a
serine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="YP_001317926.1"
/db_xref="GI:150387877"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR002317"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:5310056"
/translation="MLDIKRIRMNLDEIKAAMARRGEKGFDLDAVVALDEDRRTILQE
VEQMKNEQKTVSKEVPKLKKEGKDVSEVMEKMKTLSAEIKNLDVKVKEIEEKMEEILL
RIPNVPHPDVPQGDTDDDNIEVRTWGEPTQFSFEPKPHWEVGVNLGILDFEAASKVTG
SRFTLYRGMAARLERALISFMLDLHTDEHGYTELLPPFMVNRASMIGTGQLPKFEEDA
FKIPQKDYFLVPTAEVPVTNIYRDDIIEGDQLPIKYVAYTPCFRSEAGSAGRDTRGLI
RQHQFNKVELVKFVRPEDSYEELEKLTNNAEKVLQLLGLPYRIVRICTGDLGFTAAFK
YDIEVWMPSYNRYVEISSCSNFEDFQARRANIRYRPDTKSKVEFVHTLNGSGLAVGRT
VAAILENFQQEDGSVVIPEAIRSYMKGFEKITAK"
misc_feature 36527..37804
/locus_tag="Amet_0024"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
misc_feature 36527..36850
/locus_tag="Amet_0024"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:202232"
misc_feature 36884..37777
/locus_tag="Amet_0024"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme bound...; Region:
SerRS_core; cd00770"
/db_xref="CDD:29815"
misc_feature order(36986..37003,37010..37030,37040..37042,37046..37048,
37052..37054,37061..37063,37100..37111,37115..37123,
37127..37129,37181..37186,37190..37192,37202..37204,
37229..37231,37241..37243,37253..37255,37301..37303,
37364..37366,37772..37777)
/locus_tag="Amet_0024"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29815"
misc_feature order(37007..37009,37217..37219,37223..37225,37310..37312,
37316..37318,37334..37336,37343..37345,37352..37354,
37358..37360,37367..37369,37373..37375,37379..37381,
37571..37582,37673..37675,37679..37681,37697..37699)
/locus_tag="Amet_0024"
/note="active site"
/db_xref="CDD:29815"
misc_feature 37100..37123
/locus_tag="Amet_0024"
/note="motif 1; other site"
/db_xref="CDD:29815"
misc_feature 37307..37318
/locus_tag="Amet_0024"
/note="motif 2; other site"
/db_xref="CDD:29815"
misc_feature order(37682..37690,37697..37699)
/locus_tag="Amet_0024"
/note="motif 3; other site"
/db_xref="CDD:29815"
gene 38018..38752
/locus_tag="Amet_0025"
/db_xref="GeneID:5310057"
CDS 38018..38752
/locus_tag="Amet_0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317927.1"
/db_xref="GI:150387878"
/db_xref="GeneID:5310057"
/translation="MPFNVCDQNGKHIGILYERCPEYSLGRKFSLVCLTELTTEKINI
NFHGIKDYLARRYDLKTVFGKIKEEKLQEKLEEEWREYYSEYGAYDEVFLLKIHLSNH
QGEISHLIEIEEQSVQGYILLNRENVIFHNKETIIIKNELDFIQPEKEILGKKPLYTK
VVDYPVISMGVMGLGEGLLLGANLSDFGGRNHIHNTKLKLMVGNDIHQLELPMQINAK
RGMTILFYLEGQKIKHMVCDERIYTF"
gene 38852..38928
/locus_tag="Amet_R0007"
/note="tRNA-Arg1"
/db_xref="GeneID:5310058"
tRNA 38852..38928
/locus_tag="Amet_R0007"
/product="tRNA-Arg"
/db_xref="GeneID:5310058"
gene 38949..39404
/locus_tag="Amet_0026"
/db_xref="GeneID:5310059"
CDS 38949..39404
/locus_tag="Amet_0026"
/note="PFAM: CMP/dCMP deaminase, zinc-binding;
KEGG: gka:GK0016 hypothetical protein"
/codon_start=1
/transl_table=11
/product="CMP/dCMP deaminase"
/protein_id="YP_001317928.1"
/db_xref="GI:150387879"
/db_xref="InterPro:IPR002125"
/db_xref="GeneID:5310059"
/translation="MEAYYMSLALEEAKKAYELGEVPIGAIILRENKVIAAAHNLRES
HHDATAHAEIIAIQAACRRLGGWRLTNSTLFVTIEPCPMCAGAILQSRIDRVVIGAMD
PKAGACGSIINLLNNNQFNHQTEIVTGVLEDECSQIMKDFFKSLRQKKK"
misc_feature 38964..39287
/locus_tag="Amet_0026"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature order(39018..39020,39066..39068,39099..39107,39189..39191,
39198..39200)
/locus_tag="Amet_0026"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature order(39093..39095,39108..39110,39120..39122,39192..39197,
39204..39209,39216..39221)
/locus_tag="Amet_0026"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature order(39099..39107,39186..39191,39198..39200)
/locus_tag="Amet_0026"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 39483..39570
/locus_tag="Amet_R0008"
/note="tRNA-Ser1"
/db_xref="GeneID:5310060"
tRNA 39483..39570
/locus_tag="Amet_R0008"
/product="tRNA-Ser"
/db_xref="GeneID:5310060"
gene 39705..39805
/gene="ffs"
/locus_tag="Amet_R0009"
/db_xref="GeneID:5310061"
misc_RNA 39705..39805
/gene="ffs"
/locus_tag="Amet_R0009"
/product="SRP RNA; RNA component of signal recognition
particle"
/db_xref="GeneID:5310061"
gene 40091..40726
/locus_tag="Amet_0027"
/db_xref="GeneID:5310062"
CDS 40091..40726
/locus_tag="Amet_0027"
/note="PFAM: SirA family protein;
KEGG: swo:Swol_1887 SirA-like protein"
/codon_start=1
/transl_table=11
/product="SirA family protein"
/protein_id="YP_001317929.1"
/db_xref="GI:150387880"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:5310062"
/translation="MWYFNKGGLLKVNKEIDARGMNCPLPVIHTKKALESIDQGKITT
IVDNETARENISKLAKSLDCEIDIQENQGSYYIDIFKDYETQGMEAMDIQCDDSPKKD
LVILIGQDQMGEGSVELGKVLMKGYLYTLTEVTPYPKAIILVNSGVRLSTEDPETIGH
LRILEANGVEILSCGTCLDYFKLKDKLVVGGLTNMYTIVEHLNNANNTIKL"
misc_feature 40133..40333
/locus_tag="Amet_0027"
/note="SirA_like_N, a protein of unknown function with an
N-terminal SirA-like domain. The SirA, YedF, YeeD protein
family is present in bacteria as well as archaea. SirA
(also known as UvrY, and YhhP) belongs to a family of a
two-component response...; Region: SirA_like_N; cd03421"
/db_xref="CDD:48207"
misc_feature 40136..40723
/locus_tag="Amet_0027"
/note="selenium metabolism protein YedF; Region:
selenium_YedF; TIGR03527"
/db_xref="CDD:163306"
misc_feature order(40136..40141,40148..40150,40157..40168,40172..40174)
/locus_tag="Amet_0027"
/note="CPxP motif; other site"
/db_xref="CDD:48207"
gene 40741..41007
/locus_tag="Amet_0028"
/db_xref="GeneID:5310063"
CDS 40741..41007
/locus_tag="Amet_0028"
/note="KEGG: tte:TTE1677 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317930.1"
/db_xref="GI:150387881"
/db_xref="GeneID:5310063"
/translation="MSQQGFYVVVFDSTHHAISAEKQLKKEKIAFNVIPTPREITASC
GLSIKFNAEVLGTVQKVVEQENIAVKGVYIIEKLHDRKRVTQVS"
misc_feature 40750..40968
/locus_tag="Amet_0028"
/note="Protein of unknown function (DUF3343); Region:
DUF3343; pfam11823"
/db_xref="CDD:204755"
gene 41021..41905
/locus_tag="Amet_0029"
/db_xref="GeneID:5310064"
CDS 41021..41905
/locus_tag="Amet_0029"
/note="PFAM: MscS Mechanosensitive ion channel;
KEGG: tte:TTE2783 Small-conductance mechanosensitive
channel"
/codon_start=1
/transl_table=11
/product="mechanosensitive ion channel protein MscS"
/protein_id="YP_001317931.1"
/db_xref="GI:150387882"
/db_xref="InterPro:IPR006685"
/db_xref="GeneID:5310064"
/translation="MEELMTSLEIILDNMREFITNPEQLSTIIANSVKIVVILVVAKV
SIRILYSITNQIFQQQKSLKLNTDLPRMETLNGLIKSLIKYGIYFIAITTIISFFGVK
VTGLIATAGIGGLAIGFGAQNLVRDVITGFFILFENQFSIGHYIEVNGVSGIVEEMAM
RITKVRDFNGDLHIIPNGQIQKLTNKSTGKMRAWVDISIAYEEDIDRAIEVLTTKSEQ
LRMENANIVEGPTVLGVTGLGNSDVVISIMAKTVPMEQWAIERLMRKTFKQAFDEVGI
EIPYPRRVIISQNEKSEM"
misc_feature <41201..41902
/locus_tag="Amet_0029"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 41264..41854
/locus_tag="Amet_0029"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 42014..42208
/locus_tag="Amet_0030"
/db_xref="GeneID:5310065"
CDS 42014..42208
/locus_tag="Amet_0030"
/note="PFAM: protein of unknown function DUF951;
KEGG: cth:Cthe_2512 protein of unknown function DUF951"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317932.1"
/db_xref="GI:150387883"
/db_xref="InterPro:IPR009296"
/db_xref="GeneID:5310065"
/translation="MPIKLEVGDRVELKKQHPCGSKAFEIMRTGADFRVKCLGCEKQI
WLVRSELERRIRKITPKNEE"
misc_feature 42023..42187
/locus_tag="Amet_0030"
/note="Bacterial protein of unknown function (DUF951);
Region: DUF951; pfam06107"
/db_xref="CDD:147978"
gene 42372..43565
/locus_tag="Amet_0031"
/db_xref="GeneID:5310066"
CDS 42372..43565
/locus_tag="Amet_0031"
/note="PFAM: aminotransferase, class I and II;
KEGG: mmp:MMP0096 aminotransferase (subgroup I)"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_001317933.1"
/db_xref="GI:150387884"
/db_xref="InterPro:IPR004839"
/db_xref="GeneID:5310066"
/translation="MKFARRMEALKASEIREILKLIENPDVISFAGGLPAPELFPVEE
MKKVSVAVLEEDGQQALQYSATEGYRPLREKIAKRMEVIGIGTTADNILITSGSQQGL
DFSGKVFLDEDDVVVCESPSYLGAINAFRAYSPKFVEIETDEDGMIIEDLEKALAETK
NIKMIYVIPDFQNPSGRTWSIERRKRLIALANQYDLPVVEDNPYGELRFEGERPPAIK
SFDTEGRVIYLGTFSKTFCPGLRLGWTLGDGELLQKYIFVKQGADLHTNTLTQRELNK
FLEMYDIDAHIEKIKDVYRKRRDVMMDSIKKYFPKNVKYTYPEGGLFTWCELPQEMNA
REIFLKSIKVNVAFVPGGSFFPNGGKENTFRLNYSMMSEEKIEEGIKRLGKVLQEEMT
AGKTI"
misc_feature 42372..43538
/locus_tag="Amet_0031"
/note="Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism]; Region: COG0436"
/db_xref="CDD:30785"
misc_feature 42453..43526
/locus_tag="Amet_0031"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature order(42660..42668,42738..42740,42888..42890,42981..42983,
43062..43064,43068..43073,43092..43094)
/locus_tag="Amet_0031"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature order(42669..42671,42768..42770,42960..42962,43086..43094,
43179..43181,43188..43190)
/locus_tag="Amet_0031"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature 43071..43073
/locus_tag="Amet_0031"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 43948..44232
/gene="rpsF"
/locus_tag="Amet_0032"
/db_xref="GeneID:5310067"
CDS 43948..44232
/gene="rpsF"
/locus_tag="Amet_0032"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001317934.1"
/db_xref="GI:150387885"
/db_xref="InterPro:IPR000529"
/db_xref="GeneID:5310067"
/translation="MNKYELTYILKSETDEEKRNQLAEKFKGIIEADGAVENVDEWGN
RKLAYEIDKRNEGYYVLVNFASSIDVPKELDRNLKIAEQVIRHMIIRIQE"
misc_feature 43948..44229
/gene="rpsF"
/locus_tag="Amet_0032"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 44256..44696
/locus_tag="Amet_0033"
/db_xref="GeneID:5310068"
CDS 44256..44696
/locus_tag="Amet_0033"
/note="TIGRFAM: single-strand binding protein;
PFAM: single-strand binding protein/Primosomal replication
protein n; nucleic acid binding, OB-fold,
tRNA/helicase-type;
KEGG: ctc:CTC00108 single-strand binding protein"
/codon_start=1
/transl_table=11
/product="single-strand binding protein"
/protein_id="YP_001317935.1"
/db_xref="GI:150387886"
/db_xref="InterPro:IPR000424"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR011344"
/db_xref="GeneID:5310068"
/translation="MNRVVMIGRLARDPELRFTASGKAVATFSIAVNKTFSKEKQADF
FNVVVWNKTAENCANYLAKGRLVGLDGRLQSRSYETKNGDKRYVTEIVADQVEFLEWG
DKNSQPNQTSQKPKQDFGKSDDFNSADIDINDFQAIDEDDDIPF"
misc_feature 44256..44693
/locus_tag="Amet_0033"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:30974"
misc_feature 44265..44552
/locus_tag="Amet_0033"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:72968"
misc_feature order(44265..44276,44349..44357,44382..44384,44388..44390,
44451..44453,44478..44480,44511..44513,44520..44522)
/locus_tag="Amet_0033"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72968"
misc_feature order(44280..44288,44304..44306,44334..44336,44355..44360,
44376..44381,44385..44387,44391..44393,44397..44399,
44403..44405,44442..44447,44469..44471,44475..44477,
44481..44486,44523..44525,44529..44531)
/locus_tag="Amet_0033"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:72968"
misc_feature order(44451..44453,44457..44459,44463..44465,44544..44546)
/locus_tag="Amet_0033"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:72968"
gene 44715..44945
/gene="rpsR"
/locus_tag="Amet_0034"
/db_xref="GeneID:5310069"
CDS 44715..44945
/gene="rpsR"
/locus_tag="Amet_0034"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_001317936.1"
/db_xref="GI:150387887"
/db_xref="InterPro:IPR001648"
/db_xref="GeneID:5310069"
/translation="MVNRRRKKMKKKVCTFCADKSSKIDYKEVHKLKKYVTERGKILP
RRISGNCAIHQRDITQAIKRSRHIALLPYTID"
misc_feature 44751..44942
/gene="rpsR"
/locus_tag="Amet_0034"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 45115..46218
/locus_tag="Amet_0035"
/db_xref="GeneID:5310070"
CDS 45115..46218
/locus_tag="Amet_0035"
/note="PFAM: YibE/F family protein;
KEGG: cno:NT01CX_0212 conserved membrane protein,
putative"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317937.1"
/db_xref="GI:150387888"
/db_xref="InterPro:IPR012507"
/db_xref="GeneID:5310070"
/translation="MINIKQVKMILVIALLVGILGASLAHGETSNEHIQYKKARAIIL
EVQEEQEGQLVVQWAKARVMNGPLKGHIIQLKHPLIKGSKYHIELEENMRIFLELRVE
ENRVTSANFIDVTKEHHLKILLAIFVTLLLIFGGFKGLRSFIALVITGLCMLYIFIPM
VFNGYSFILATVVVSGIIIVSSFILISGFTTKSLTAIIGTIGGTTISGVIAIYFGNLM
YLTGITDDAIETLIRHSTLDVDYRGLLYSGMTIGALGAVMDVSMTITSVIYEIKRGNR
QVRIKSLVLSGLAVGRDIMATMTNTLILAYAGTSLPLLLLFIFSEMPLEDIINSQYIA
SEVVRALSGSIGLVLTIPITSVVAAINIKWAKE"
misc_feature 45472..46194
/locus_tag="Amet_0035"
/note="YibE/F-like protein; Region: YibE_F; pfam07907"
/db_xref="CDD:149146"
gene 46365..46781
/locus_tag="Amet_0036"
/db_xref="GeneID:5310071"
CDS 46365..46781
/locus_tag="Amet_0036"
/note="KEGG: cpf:CPF_0517 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317938.1"
/db_xref="GI:150387889"
/db_xref="GeneID:5310071"
/translation="MSYVLVKEKMIDSEEILKSIEEEFSFKKIKDITSGSKRDDTLIY
QIIHDVKQLKKEIEAEGEMGQTEEEELIEELMSVADEKVVIIEEVIPEGLIAYGYSYH
YDEGLEEIKSIFIASDESIGELRLRDIADRVLRSID"
gene 47045..47647
/locus_tag="Amet_0037"
/db_xref="GeneID:5310072"
CDS 47045..47647
/locus_tag="Amet_0037"
/note="TIGRFAM: ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5;
PFAM: ribosomal protein L25;
KEGG: swo:Swol_0069 ribosomal protein L25"
/codon_start=1
/transl_table=11
/product="ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5"
/protein_id="YP_001317939.1"
/db_xref="GI:150387890"
/db_xref="InterPro:IPR001021"
/db_xref="GeneID:5310072"
/translation="MGTPILKYTIREEAGTGGASKARRAGEVPAVLYSKGEVTQPVYL
NTKELEKILSIYGGSSRIALDHEGKKCFAIIKEIQKNMLKNSLLHVDLQKLDENQKIR
MTIPIYILNKEAVETLAEIVQIQQDEVEIQAYPRDLPEKIEVDASLLKDQANLTMKDL
NIVGNTAIEILDDLENVVATLAYTSRPVETEEESVEEALV"
misc_feature 47045..47590
/locus_tag="Amet_0037"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:180166"
misc_feature 47057..47323
/locus_tag="Amet_0037"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature order(47075..47077,47099..47107,47111..47113,47141..47149,
47159..47161,47270..47275,47279..47281,47309..47311,
47315..47317,47321..47323)
/locus_tag="Amet_0037"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(47147..47149,47222..47224,47258..47260,47270..47272,
47321..47323)
/locus_tag="Amet_0037"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(47264..47269,47276..47278,47297..47299,47321..47323)
/locus_tag="Amet_0037"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 47781..48395
/locus_tag="Amet_0038"
/db_xref="GeneID:5310073"
CDS 47781..48395
/locus_tag="Amet_0038"
/note="TIGRFAM: ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5;
PFAM: ribosomal protein L25;
KEGG: cpe:CPE1874 probable general stress protein"
/codon_start=1
/transl_table=11
/product="ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5"
/protein_id="YP_001317940.1"
/db_xref="GI:150387891"
/db_xref="InterPro:IPR001021"
/db_xref="GeneID:5310073"
/translation="MMKNSLVSSLRNETGSNASHRSRDLGNVPAVIYGKSINTLTVEI
ERTEVEAFVRNQGGKGLVQVNVGGQPYTTFVKEMQRDPVTGMIMHVDFQQVNQDEQIH
TMVPIILKGRGFVEKGGVTVQQQVRELEVQCFAGSIPEKFEFDISNFRPGDTLKVSDV
EFGEEVSIINNLESVIASIATPAKIIDDEGEVPLEKKIELADME"
misc_feature 47781..48353
/locus_tag="Amet_0038"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:180166"
misc_feature 47793..48062
/locus_tag="Amet_0038"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature order(47811..47813,47835..47843,47847..47849,47877..47885,
47895..47897,48006..48011,48015..48017,48045..48047,
48051..48053,48057..48059)
/locus_tag="Amet_0038"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(47883..47885,47958..47960,47994..47996,48006..48008,
48057..48062)
/locus_tag="Amet_0038"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(48000..48005,48012..48014,48033..48035,48057..48059)
/locus_tag="Amet_0038"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 48874..50394
/locus_tag="Amet_R0010"
/db_xref="GeneID:5310074"
rRNA 48874..50394
/locus_tag="Amet_R0010"
/product="16S ribosomal RNA"
/db_xref="GeneID:5310074"
gene 50461..50536
/locus_tag="Amet_R0011"
/note="tRNA-Ala1"
/db_xref="GeneID:5310075"
tRNA 50461..50536
/locus_tag="Amet_R0011"
/product="tRNA-Ala"
/db_xref="GeneID:5310075"
gene 50776..53710
/locus_tag="Amet_R0012"
/db_xref="GeneID:5310076"
rRNA 50776..53710
/locus_tag="Amet_R0012"
/product="23S ribosomal RNA"
/db_xref="GeneID:5310076"
gene 53891..54006
/locus_tag="Amet_R0013"
/db_xref="GeneID:5310077"
rRNA 53891..54006
/locus_tag="Amet_R0013"
/product="5S ribosomal RNA"
/db_xref="GeneID:5310077"
gene 54401..55921
/locus_tag="Amet_R0014"
/db_xref="GeneID:5310078"
rRNA 54401..55921
/locus_tag="Amet_R0014"
/product="16S ribosomal RNA"
/db_xref="GeneID:5310078"
gene 56089..56165
/locus_tag="Amet_R0015"
/note="tRNA-Ile1"
/db_xref="GeneID:5310079"
tRNA 56089..56165
/locus_tag="Amet_R0015"
/product="tRNA-Ile"
/db_xref="GeneID:5310079"
gene 56325..59259
/locus_tag="Amet_R0016"
/db_xref="GeneID:5310080"
rRNA 56325..59259
/locus_tag="Amet_R0016"
/product="23S ribosomal RNA"
/db_xref="GeneID:5310080"
gene 59440..59555
/locus_tag="Amet_R0017"
/db_xref="GeneID:5310081"
rRNA 59440..59555
/locus_tag="Amet_R0017"
/product="5S ribosomal RNA"
/db_xref="GeneID:5310081"
gene complement(59604..60812)
/locus_tag="Amet_0039"
/db_xref="GeneID:5310082"
CDS complement(59604..60812)
/locus_tag="Amet_0039"
/EC_number="3.5.1.18"
/note="TIGRFAM: acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase;
PFAM: peptidase M20; peptidase dimerisation domain
protein;
KEGG: rxy:Rxyl_2475 acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase"
/codon_start=1
/transl_table=11
/product="acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase"
/protein_id="YP_001317941.1"
/db_xref="GI:150387892"
/db_xref="InterPro:IPR001261"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010182"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:5310082"
/translation="MKNLVDWKGFIHQYYDEEELVKLTQDLIKIPSHVNYPGREKEVG
IFLSDYCQRQGFDVEVKTIVDERVNVIVTLKGTGEGKTLLLNGHLDTVPPGEMDFDPY
GAEIVDGHILGRGTVDMKGPIASMIIMMLALKRSDLKLTGDIIFTGVIGEEEQSEGTE
DLVKNGIKADGAIVGEPSSSQYSAGHRGLEWLEIKIKGRSAHGGVPHLGINAIEKAGK
LISAIQDTIYPKLEKRSHPLMGPSVMNFGYIKGGIQPSTVAGDCIIQIDRRYIPGETV
ATVIAEYQEVIDHLKAHDSDFDAEIIRMPNNMLTLDHLPLETSLDDPITVALKNALSA
VLEREPVLSTKRGWTDASLLYNFANIPTIVYGPGDISYSHTKNEQIAIKELIEAVEVY
FLTALQFCGN"
misc_feature complement(59616..60764)
/locus_tag="Amet_0039"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK08651"
/db_xref="CDD:181522"
misc_feature complement(59625..60749)
/locus_tag="Amet_0039"
/note="Peptidase M20 acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE)-like; Region: M20_ArgE_DapE_like; cd08659"
/db_xref="CDD:193570"
misc_feature complement(order(59691..59693,60285..60287,60354..60359,
60459..60461,60549..60551))
/locus_tag="Amet_0039"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193570"
misc_feature complement(order(59775..59777,60006..60008,60012..60014,
60036..60041,60057..60080,60084..60086,60141..60143,
60150..60155,60159..60164,60171..60176,60180..60182,
60198..60209,60240..60242))
/locus_tag="Amet_0039"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193570"
gene complement(60905..62329)
/locus_tag="Amet_0040"
/db_xref="GeneID:5310083"
CDS complement(60905..62329)
/locus_tag="Amet_0040"
/note="PFAM: C4-dicarboxylate anaerobic carrier; AbgT
putative transporter;
KEGG: bld:BLi00322 YcgA"
/codon_start=1
/transl_table=11
/product="C4-dicarboxylate anaerobic carrier"
/protein_id="YP_001317942.1"
/db_xref="GI:150387893"
/db_xref="InterPro:IPR004669"
/db_xref="InterPro:IPR004697"
/db_xref="GeneID:5310083"
/translation="MSNDTNPVKTKRFKVPHTYVIICMIILLAFIGTYIMPAGEYQRV
EDPNGRTVVDADSFTSVPQNPVKFFSFTEDHLFSSVHRGMQDASNIIFFILIVGGAFA
MIQGTGAINAGIGKLALGLKDKGSMIIPVMLFIFGVGGSTIGMAEETIVFIPIGIALA
RALGYDAIVGVAMITLGASAGFSGGIANPFTVGVAQGIAELPIYSGAMYRVVIFAVFQ
IAAFLYVMRYAKKVKADPQISAVRELEIAEKDQIIDLSELPKFTTKHIYVFITVIIGF
VAMIYGVMEHDWYIRELSSLFLMMGIFASLIGGSSPSKASSDFVLGAKDLIFGALVVG
IARAILMVMSDGQIIDSLVYSMAAGISTFGTTIGALFMYLVQIVLNLFIPSGSGQAAT
TMPIMVPLSDLIGVSRQTAVLAYQLGDGITNLIIPTSGTIMGVIAISKIPYEKWVKWV
APYVGILLLIGAVFVAMSNIIGLT"
misc_feature complement(60935..62305)
/locus_tag="Amet_0040"
/note="Predicted membrane protein [Function unknown];
Region: COG1288"
/db_xref="CDD:31479"
gene 62690..64081
/locus_tag="Amet_0041"
/db_xref="GeneID:5310084"
CDS 62690..64081
/locus_tag="Amet_0041"
/note="PFAM: amidohydrolase; Amidohydrolase 3;
KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate
etc)"
/codon_start=1
/transl_table=11
/product="amidohydrolase 3"
/protein_id="YP_001317943.1"
/db_xref="GI:150387894"
/db_xref="InterPro:IPR006680"
/db_xref="InterPro:IPR013108"
/db_xref="GeneID:5310084"
/translation="MYDLKIINGIIIDFDTGQKKVCDIGIKKGKIDAIGNCPEDAKRE
IDASGKIIAPGFIDIHMHEENLKEGGANPIDISNRMLLMGVTTCVAGNCGNNRQSLEE
FIHFIHHKGMPVNYLSFIGHNFLRNAVGSTDRYQKASKNEVEEMQKLLINAVDQGALG
VSFGLEYAPGIDLEEVLDLCSVIEDRKMLLAAHYRKDAKHSIPSIKEMMEISKQTGHP
MQISHIGSSCAYGMMTEGLDTIQKGINLGLDITVDCYPYDAFSTYIGSAVFDEGCFGL
WNKSYDAILLTEAPYKGMRCDEALFHKARKEHPDMLVVAFVMNEEEVIQAIKAPFVMV
ASDGLYRKGQGHPRGAGSFPRVLGKYVREKQELSLLEALKKMTLMPAKRLGLESKGEI
KEGKDADIVIFDQNEILDGATFEDPQALPIGIDYVILKGEVAVENNIIIKGDLGKYIS
NPLEKTVQVNSLL"
misc_feature 62690..64045
/locus_tag="Amet_0041"
/note="D-glutamate deacylase; Validated; Region: PRK09061"
/db_xref="CDD:181633"
misc_feature 62699..>62875
/locus_tag="Amet_0041"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature 62807..>63472
/locus_tag="Amet_0041"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature order(62867..62869,62873..62875,63266..63268,63356..63358)
/locus_tag="Amet_0041"
/note="active site"
/db_xref="CDD:30035"
misc_feature <63647..64000
/locus_tag="Amet_0041"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
gene 64185..65354
/locus_tag="Amet_0042"
/db_xref="GeneID:5310085"
CDS 64185..65354
/locus_tag="Amet_0042"
/note="TIGRFAM: amidohydrolase;
PFAM: peptidase M20; peptidase dimerisation domain
protein;
KEGG: bld:BLi00323 hypothetical protein"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_001317944.1"
/db_xref="GI:150387895"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR010168"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:5310085"
/translation="MRQIAEKLTHGIKEELIQLSEYIFNNPELGYEEFKACEAHVKLL
KRHGFVVEEGFLDIKTAFKAVYDSGIPGPVVAFLSEYDALPGMGHGCGHNLLGATTTG
AGITVSKLMKEMGLRGKVMVFGTPAEETSGAKVQMTNEGAFEDVDVAMQAHPASQHMK
SGKSLALEAIQFTFTGKSAHAAASPEEGINALDAAINTFVSINALRQHILPSARIHGI
ISEGGKAANIVPDLAIAQFYVRATTKTYLQELVEKVKNCARAGAMAAGAKVEFYNYEA
SYDNLVTNETLSEAYSRRLMEVGVEKIEGAKKGYGSLDLGNISHVGPTIHPYFRICEE
NIPAHTKAFAAATQTPFAYESMVKTINALALTATDVLEDEKLLKKIKEEFQKAEK"
misc_feature 64218..65285
/locus_tag="Amet_0042"
/note="M20 Peptidase Aminoacylase 1-like protein 2-like,
amidohydrolase subfamily; Region: M20_ACY1L2_like;
cd05672"
/db_xref="CDD:193547"
misc_feature 64218..65213
/locus_tag="Amet_0042"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature order(64455..64457,64461..64463,64569..64571,64641..64643,
65199..65201)
/locus_tag="Amet_0042"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193547"
gene 65576..67054
/locus_tag="Amet_0043"
/db_xref="GeneID:5310086"
CDS 65576..67054
/locus_tag="Amet_0043"
/note="PFAM: chemotaxis sensory transducer;
KEGG: tte:TTE1777 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_001317945.1"
/db_xref="GI:150387896"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:5310086"
/translation="MLMGKNKEIKKVTSKLVDISKGDLTSKIDVKSQGTIRELGESIN
QVLFRVRNLVGKVSSSNEKTLNFAKDLEGNARYIYDASQDVATAITDIASEASIQSEA
VANVKGYTDRIEKDILNILDEAAKTQNVSEEMIKTVQNGVGGFEKVVEMLHRNANWSI
DLSQKIQVLKTEAEKVQSITSVVTDISNHTNLLALNASIEAARAGDSGRGFAVVANEV
RNLAEQSTNSAKEIEGITTSIVKKIKDMTEEIELETVKVKNDIRIADESKVQLHSIIE
VTESTSQGIDNIVFLAQDESKLVHELNRAIEEIALATEKAAAFSQEAAASTEEQTASV
QVIFESIKKLGVMAKEVHEIVDGFVQKFTMDEEIKKLLDRGIKILEEITNNNDLEELS
QEKLRGLFGEVLNKNVYFELLSILDDSGESKAVVLRGSNEKLSGNASHRPYFQQAIQG
STFISEPYISLFSNTYCVTLALPFRDEQGKIVGIVMGDVSIG"
misc_feature <65600..65731
/locus_tag="Amet_0043"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature order(65600..65605,65609..65614,65621..65626,65630..65632,
65678..65683,65687..65692,65699..65704,65708..65710)
/locus_tag="Amet_0043"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 65762..66505
/locus_tag="Amet_0043"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 65930..66505
/locus_tag="Amet_0043"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(65930..65935,65942..65947,65954..65956,65963..65968,
65972..65977,65984..65986,65993..65998,66005..66007,
66014..66019,66026..66031,66038..66040,66047..66052,
66056..66061,66071..66073,66077..66082,66089..66091,
66098..66103,66110..66115,66122..66124,66131..66133,
66140..66145,66152..66154,66164..66166,66173..66175,
66194..66196,66206..66208,66215..66217,66224..66229,
66236..66238,66245..66250,66257..66262,66266..66271,
66278..66283,66320..66325,66332..66334,66341..66346,
66353..66355,66362..66367,66371..66376,66383..66388,
66395..66397,66404..66409,66416..66418,66425..66430,
66434..66439,66446..66451,66455..66460,66467..66469,
66476..66481,66488..66490,66497..66502)
/locus_tag="Amet_0043"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 66140..66241
/locus_tag="Amet_0043"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
misc_feature 66935..>67048
/locus_tag="Amet_0043"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
gene 67152..67490
/locus_tag="Amet_0044"
/db_xref="GeneID:5310087"
CDS 67152..67490
/locus_tag="Amet_0044"
/note="PFAM: protein of unknown function DUF156;
KEGG: dsy:DSY4511 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317946.1"
/db_xref="GI:150387897"
/db_xref="InterPro:IPR003735"
/db_xref="GeneID:5310087"
/translation="MENINSDKILEDLSIDNQEPKKPSKQSQATQKSIISRLNRIEGQ
IRGIKSMIEKGTYCDDVINQIEASRSALSSIEILLLESHFKHCVVEQIKSGDEGVVEE
ILKTIKKLTK"
misc_feature 67242..67487
/locus_tag="Amet_0044"
/note="Staphylococcus aureus copper-sensitive operon
repressor (CsoR), and related domains; this family was
previously known as part of DUF156; Region:
SaCsoR-like_DUF156; cd10152"
/db_xref="CDD:197387"
misc_feature order(67242..67244,67251..67256,67263..67268,67275..67277,
67284..67289,67293..67298,67305..67316,67320..67328,
67332..67340,67344..67349,67353..67358,67365..67370,
67377..67382,67386..67394,67398..67406,67413..67415,
67437..67442,67446..67475)
/locus_tag="Amet_0044"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197387"
misc_feature order(67242..67244,67251..67256,67263..67268,67275..67277,
67284..67289,67293..67298,67305..67316,67320..67328,
67332..67340,67344..67349,67353..67358,67365..67370,
67377..67379,67386..67388,67398..67400,67455..67457,
67464..67475)
/locus_tag="Amet_0044"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197387"
misc_feature order(67320..67322,67398..67400,67455..67457)
/locus_tag="Amet_0044"
/note="allosteric switch controlling residues; other site"
/db_xref="CDD:197387"
misc_feature order(67323..67325,67398..67400,67410..67412)
/locus_tag="Amet_0044"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197387"
misc_feature order(67380..67382,67389..67394,67401..67406,67410..67415,
67437..67442,67446..67454,67458..67463)
/locus_tag="Amet_0044"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197387"
gene 67581..67796
/locus_tag="Amet_0045"
/db_xref="GeneID:5310088"
CDS 67581..67796
/locus_tag="Amet_0045"
/note="PFAM: Heavy metal transport/detoxification protein;
KEGG: dsy:DSY4509 hypothetical protein"
/codon_start=1
/transl_table=11
/product="heavy metal transport/detoxification protein"
/protein_id="YP_001317947.1"
/db_xref="GI:150387898"
/db_xref="InterPro:IPR000428"
/db_xref="InterPro:IPR006121"
/db_xref="GeneID:5310088"
/translation="MQKKIFIEGMTCGHCVGHVKRGLEEVTGVNEVKVDLEEKNAVVD
LQEIVTEESLKSAIEEAGYKVVKIESI"
misc_feature 67599..67775
/locus_tag="Amet_0045"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(67608..67616,67623..67625)
/locus_tag="Amet_0045"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
gene complement(67921..68937)
/locus_tag="Amet_0046"
/db_xref="GeneID:5310089"
CDS complement(67921..68937)
/locus_tag="Amet_0046"
/note="PFAM: aminodeoxychorismate lyase;
KEGG: tte:TTE1255 predicted periplasmic solute-binding
protein"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase"
/protein_id="YP_001317948.1"
/db_xref="GI:150387899"
/db_xref="InterPro:IPR003770"
/db_xref="GeneID:5310089"
/translation="MKKWICTLCIVLLLGLVSLFFLPSYLSMAANTQDVEITIPQGAS
LYQVSERLYDEGVIRSRLWFRYQGKISQADRNIRPGAYTFSPDTDLEEIFTLLQKGVP
EQPVIMTIPEGFTLYEIAQRVESLGFGLAEEFIKATQDYFKSRDYSFDTSELYFEMEG
YLYPDTYHLKKNQDMKAIVHSLVSPIDAFFSEEYIKRAEELGLSLHEVLTIASIIERE
AYHDEERATVSGVIFNRLGIRMSLQIDATVIYGLGEGKEHRNRVLYADLETPNPFNTY
MNTGIPPGPIAAPSKASIHATLYPEDHSYLYYVLGEGGHVFSETYQEHLKHVDAYRRR
INQN"
misc_feature complement(67945..68835)
/locus_tag="Amet_0046"
/note="YceG-like family; Region: YceG; pfam02618"
/db_xref="CDD:202312"
misc_feature complement(67954..68709)
/locus_tag="Amet_0046"
/note="proteins similar to Escherichia coli yceG; Region:
yceG_like; cd08010"
/db_xref="CDD:153433"
misc_feature complement(order(67954..67956,67963..67968,67975..67977,
67996..68001,68137..68139,68146..68148,68203..68205,
68209..68211,68611..68613,68620..68625,68647..68649,
68659..68661,68686..68703,68707..68709))
/locus_tag="Amet_0046"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153433"
gene 69263..70279
/locus_tag="Amet_0047"
/db_xref="GeneID:5310090"
CDS 69263..70279
/locus_tag="Amet_0047"
/note="PFAM: UBA/THIF-type NAD/FAD binding protein;
MoeZ/MoeB domain protein;
KEGG: sus:Acid_0749 UBA/ThiF-type NAD/FAD binding protein"
/codon_start=1
/transl_table=11
/product="UBA/THIF-type NAD/FAD binding protein"
/protein_id="YP_001317949.1"
/db_xref="GI:150387900"
/db_xref="InterPro:IPR000594"
/db_xref="InterPro:IPR007901"
/db_xref="GeneID:5310090"
/translation="METRYEKQINFSGIGSEGQQLLQKASVLIIGCGALGTVVANSLV
RTGVGHVKIVDRDFVETGNLHRQILFDEEDAAEGMPKAEAAKKKLGKMNSTIRIETLV
ADVNSITISQMISNVDLIIDCTDNFKTRYLINDVAFKENIPWIYGGVIGSSGVLQSFI
PGETACLRCMMAEPPPTGSLPTCDTAGVINTITGIIGSLQANEAIKYVTNQVEKMKKE
MLYLDLWDNTVESIEIQTNIDCPCCQKRSFIFLENKFPEAVHICGNNSVQVMPFTNKK
VNLDQLAIRLQEANIQVKRTPFLLNIKTDAHEITVFPDGRAIIKQVSNVNEAKSIYAK
YIGY"
misc_feature 69263..70273
/locus_tag="Amet_0047"
/note="thiamine/molybdopterin biosynthesis ThiF/MoeB-like
protein; Validated; Region: PRK07688"
/db_xref="CDD:181084"
misc_feature 69272..69964
/locus_tag="Amet_0047"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature order(69353..69355,69359..69361,69365..69367,69425..69427,
69431..69433,69458..69460,69503..69505,69629..69631,
69647..69649)
/locus_tag="Amet_0047"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature order(69365..69367,69632..69640,69650..69652,69704..69709,
69719..69721,69725..69727,69917..69919,69929..69931,
69950..69952,69956..69961)
/locus_tag="Amet_0047"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene 70432..71064
/locus_tag="Amet_0048"
/db_xref="GeneID:5310091"
CDS 70432..71064
/locus_tag="Amet_0048"
/note="PFAM: SNARE associated Golgi protein;
KEGG: cac:CAC0677 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317950.1"
/db_xref="GI:150387901"
/db_xref="InterPro:IPR015414"
/db_xref="GeneID:5310091"
/translation="MNKKKSFIKIVAIVIILGIVYTLNNQGLFGVSLDVDRIQKFVQD
AGVWGVLVYILINTIRPFLFIPTAALFITGGIIFGAVQGSIYNLIGLICACSLAYFVA
RKFEGPFRKLVGEKYVSKLYGVEGRKAVKALFIMRVTPGFPIDPISFGAGLVNMNYRK
FFLGTLLGIAPKAIIYTFLGDQIDNLYSVQTMVALGILVLLATTSYFVDV"
misc_feature 70624..70977
/locus_tag="Amet_0048"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:204201"
gene complement(71109..71585)
/locus_tag="Amet_0049"
/db_xref="GeneID:5310092"
CDS complement(71109..71585)
/locus_tag="Amet_0049"
/note="KEGG: mta:Moth_2197 putative transcriptional
regulator, AsnC family"
/codon_start=1
/transl_table=11
/product="AsnC family transcriptional regulator"
/protein_id="YP_001317951.1"
/db_xref="GI:150387902"
/db_xref="GeneID:5310092"
/translation="MMSISELDKCIIRALQEDLPLSPEPFKKLAEDLGIEEEMLLKKV
QFFLDSGMMRRFGATLRHQKVGFKANAMVVWKIPPSRSKEVGHHMAQFAEVSHCYERP
TYPDWPYNLFTMIHATSKEECHTIAKKIALTVGFFDYDLLFSSHELKKVSMRYFCE"
misc_feature complement(71136..71585)
/locus_tag="Amet_0049"
/note="Transcriptional regulators [Transcription]; Region:
Lrp; COG1522"
/db_xref="CDD:31711"
gene complement(71582..72040)
/locus_tag="Amet_0050"
/db_xref="GeneID:5310093"
CDS complement(71582..72040)
/locus_tag="Amet_0050"
/note="SMART: regulatory protein, AsnC/Lrp family;
KEGG: mta:Moth_2198 putative transcriptional regulator,
AsnC family"
/codon_start=1
/transl_table=11
/product="AsnC family transcriptional regulator"
/protein_id="YP_001317952.1"
/db_xref="GI:150387903"
/db_xref="InterPro:IPR000485"
/db_xref="GeneID:5310093"
/translation="MDKIDGQLLTLIQRDFPVTSRPYAFLGDQLGLSEADVITRISNL
KNQGFIRRVGGVFDSRKLGYTSTLCALKVPENRIHQVKQIINEIPGVTHNYLRNHEYN
MWFTLIAPSNEVIVDTLTSLKLKTNLDQLMNLPATQFFKINVHFKLQEGS"
misc_feature complement(71732..72040)
/locus_tag="Amet_0050"
/note="helix_turn_helix ASNC type; Region: HTH_ASNC;
smart00344"
/db_xref="CDD:197668"
misc_feature complement(71906..72040)
/locus_tag="Amet_0050"
/note="AsnC-type helix-turn-helix domain; Region:
HTH_AsnC-type; pfam13404"
/db_xref="CDD:205582"
gene complement(72033..73040)
/locus_tag="Amet_0051"
/db_xref="GeneID:5310094"
CDS complement(72033..73040)
/locus_tag="Amet_0051"
/note="PFAM: Radical SAM domain protein;
KEGG: chy:CHY_1211 radical SAM domain protein"
/codon_start=1
/transl_table=11
/product="radical SAM domain-containing protein"
/protein_id="YP_001317953.1"
/db_xref="GI:150387904"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:5310094"
/translation="MIISWNTTNHCNMYCDHCYRDSGVKGSSELNTEEGKALIDEIVL
AGFKIMIFSGGEPLMREDLFELIAYAKDRGLRPVLGTNGTFITPAVAEKLKRVGTMGV
GISLDSLDSHKHDGLRHYDGAWDGAIQGMRNCQSAGLPFQIHTTVMDWNNPELEAITD
LAVELGAVAHHFFFLVPTGRAHNIEEESLRAEQYERTLERIMKKQQLVRIELKPTCAP
QFMRIAKQMGMNLRFGRGCLAGTSYCIINPNGKVQPCAYLDMEIGNVRETPFSEIWKN
SEVFSNLRTLSYGGGCGSCEYHISCGGCRARAAYYHEGDYMAEEPWCLHHGRKGGVAH
G"
misc_feature complement(72060..73037)
/locus_tag="Amet_0051"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ2; Region: rSAM_NirJ2; TIGR04055"
/db_xref="CDD:188570"
misc_feature complement(72441..73028)
/locus_tag="Amet_0051"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(72516..72521,72603..72605,72726..72728,
72795..72803,72873..72878,72882..72884,72984..72992,
72996..72998,73002..73004,73008..73010))
/locus_tag="Amet_0051"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(72072..72332)
/locus_tag="Amet_0051"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene complement(73037..74245)
/locus_tag="Amet_0052"
/db_xref="GeneID:5310095"
CDS complement(73037..74245)
/locus_tag="Amet_0052"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: dsy:DSY2223 hypothetical protein"
/codon_start=1
/transl_table=11
/product="radical SAM domain-containing protein"
/protein_id="YP_001317954.1"
/db_xref="GI:150387905"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:5310095"
/translation="MISVTKFLLGTSHFGDSLRYRHCTEKNPHGTSPGHGPVVAWNIT
QTCNLNCIHCYMNSANKKYEGELTHEEALGFIDDLGGFKVPVLLFSGGEPLIREDFFA
LAQHASKLNIRPTVSTNGTLISRKVAETLKSIGVGYVGISLDGLKDVNDRFRAQAGAF
DAALTGIENCVAVGQKVGLRFTINRHNVKQLNDIFDLVEKMNIDRICFYHLVYTGRGS
TMVAEDISHEESRQAMDLIIERTLDFHRRGLHKEILTVDNHADGIYIYQKLKEMDPSR
ADEVYRLMKINGGNRSGIAFANVDSTGNVHPDQFTQNHLIGNIRERPFSEIWTDESHP
ILRGLKNRKSLLKGRCGECQWVDLCNGNFRARAEAVTGDFWGSDPACYLTDEEIGLSS
HCLNGGGAKL"
misc_feature complement(73082..74134)
/locus_tag="Amet_0052"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ1; Region: rSAM_NirJ1; TIGR04054"
/db_xref="CDD:188569"
misc_feature complement(<73637..74125)
/locus_tag="Amet_0052"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(73700..73702,73820..73822,73889..73894,
73967..73972,73976..73978,74081..74089,74093..74095,
74099..74101,74105..74107))
/locus_tag="Amet_0052"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(73103..73351)
/locus_tag="Amet_0052"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene 74566..75975
/locus_tag="Amet_0053"
/db_xref="GeneID:5310096"
CDS 74566..75975
/locus_tag="Amet_0053"
/note="PFAM: conserved hypothetical protein 698;
KEGG: ter:Tery_0334 conserved hypothetical protein 698"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317955.1"
/db_xref="GI:150387906"
/db_xref="InterPro:IPR004630"
/db_xref="GeneID:5310096"
/translation="MINFQGVKGENVLKKEVDLITVSKKENWWTEAMKQGINWSSLWK
KEDWWTVWLGFLLIIASIAGVVAVPVLPLRWGPGRQGAETIIGSIPAEILSGILVTGI
INLALFSIGILFIKREELKKFIVAFPFVFMLAIVAELGGNYAPWRHYGFNSVIWALGI
GLLVSNTIKTPGFMKGAVRTELYIKTGLVLLGASILFNRMLALGAMGLGVAWIVTPIV
LISMYWFSQKVLKMHDSKGLAITIASATSVCGVSAAIAAGTAAKAKKEEISLAISITL
IFTVVMMIGMPALVGALGIDPIVGGAWLGGTIDATGAVVAAGAMLGENALEVASVIKM
VQNILIGLIAFGIAIFFSTVVEKKPASEVTIGPAEVWVRMPKFIIGFIAASILFSFIL
PQNAIDASLPSINGFREFLFTLAFISIGLESNFKEMAKMVKGGKPLTLYLVGQALNII
LTFIAAYIFFSGRFFTLPF"
misc_feature 74920..75945
/locus_tag="Amet_0053"
/note="Conserved hypothetical protein 698; Region:
Cons_hypoth698; cl01075"
/db_xref="CDD:141086"
gene 76126..76353
/locus_tag="Amet_0054"
/db_xref="GeneID:5310097"
CDS 76126..76353
/locus_tag="Amet_0054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317956.1"
/db_xref="GI:150387907"
/db_xref="GeneID:5310097"
/translation="MERKLVMKYFRTLLLMTVIVVATYIVFTDVGDSINQSSGAGDIW
WTDTADIDQAYRNMIEKKQQIQLNSGVSTIN"
gene 76435..76839
/locus_tag="Amet_0055"
/db_xref="GeneID:5310098"
CDS 76435..76839
/locus_tag="Amet_0055"
/note="PFAM: SirA family protein;
KEGG: gme:Gmet_1571 hypothetical protein"
/codon_start=1
/transl_table=11
/product="SirA family protein"
/protein_id="YP_001317957.1"
/db_xref="GI:150387908"
/db_xref="InterPro:IPR001455"
/db_xref="GeneID:5310098"
/translation="MIKLGDVESLEAYDSEVAYLASKVVAMYESLSPQLEITLEKEAN
IKVTPEESKVKDQEKDLLNIVDLKGVKCPMNFVKAKVALGKIASGEEIGFYLDDDAPI
NNVPKSVEGEGHQIVNIDREYTGYNLLIVKKK"
misc_feature 76624..76830
/locus_tag="Amet_0055"
/note="SirA, YedF, and YeeD. Two-layered alpha/beta
sandwich domain. SirA (also known as UvrY, and YhhP)
belongs to a family of bacterial two-component response
regulators that controls secondary metabolism and
virulence. The other member of this...; Region:
SirA_YedF_YeeD; cd00291"
/db_xref="CDD:48205"
misc_feature order(76627..76632,76639..76641,76648..76659,76663..76665)
/locus_tag="Amet_0055"
/note="CPxP motif; other site"
/db_xref="CDD:48205"
gene 76860..77771
/locus_tag="Amet_0056"
/db_xref="GeneID:5310099"
CDS 76860..77771
/locus_tag="Amet_0056"
/note="TIGRFAM: cysteine synthase; cysteine synthase A;
PFAM: Pyridoxal-5'-phosphate-dependent protein, beta
subunit;
KEGG: mta:Moth_1706 cysteine synthase A"
/codon_start=1
/transl_table=11
/product="cysteine synthase A"
/protein_id="YP_001317958.1"
/db_xref="GI:150387909"
/db_xref="InterPro:IPR001216"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR005856"
/db_xref="InterPro:IPR005859"
/db_xref="GeneID:5310099"
/translation="MIYKNITQTIGNTPVVKLNNLVDENMADVYVKLEMFNPGGSVKD
RISISMIEEAEKKGLIKPGDTIVEPTSGNTGIGLGLVAASKGYKLVLTMPESMSLERR
KLLKAYGAELELTKAHLGMKGAIDKANELVEENGYVMLQQFNNLANPEIHRNTTAKEI
LNDFGNDLDAFVVGIGTGGTITGVGEVLKKKIDKITVVAVEPEDSPVLSGGNPGPHMI
QGIGAGFVPEVLNVKIFDEVIKVQNEEALETARQLAKQEGLMVGISSGAAVFAAIKVA
QKLGKGKKVLTIAPDTGERYISTALFE"
misc_feature 76863..77756
/locus_tag="Amet_0056"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature 76890..77753
/locus_tag="Amet_0056"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(76902..76910,76947..76949,76965..76967,76971..76973,
77097..77099,77106..77108,77154..77159,77166..77171,
77178..77183,77343..77348,77619..77627,77631..77639,
77709..77711,77739..77741,77748..77750)
/locus_tag="Amet_0056"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(76986..76988,77076..77078,77382..77399,77517..77519,
77649..77651,77727..77732)
/locus_tag="Amet_0056"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 76986..76988
/locus_tag="Amet_0056"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 77883..79118
/locus_tag="Amet_0057"
/db_xref="GeneID:5310100"
CDS 77883..79118
/locus_tag="Amet_0057"
/EC_number="2.5.1.47"
/note="PFAM: Cys/Met metabolism
pyridoxal-phosphate-dependent protein;
KEGG: cac:CAC0102 O-acetylhomoserine (thiol)-lyase"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="YP_001317959.1"
/db_xref="GI:150387910"
/db_xref="InterPro:IPR000277"
/db_xref="GeneID:5310100"
/translation="MGLNTKLIHGNGVSKEKKVGATNVPIYFSNAYAYNKAKDLENIF
SGRDIGHVYTRISNPSIEALEKRMVAVEGGVSAIATASGMSAIYLAVMNILTPGDEII
ASSGVFGGTYNFFKNLKQLNIEVKFVDELNEESLTEHITPKTKIVFAETIGNPKLDVL
DIEVVSTICKIKGVVFMVDSTVTTPYLIRPLEYGADVVIHSVSKYVNGSANSIGGMII
DGGSTKFNSERYENFKHYTKRYRQFAFSAKLRNELGKDLGAVMSPMNSFLNLTGIETL
SLRMKRHCHNAYQLAKYLQENPKVLHTNYPGLETSEYYPLTQKYYAKEAGGILTLRVG
SKEKAFQLIDSLKLISNVTNIGDTKTLALHPASTICNGNTPEEKEQMGVYEDLIRVSV
GLEDMEDIIEDLENALGGL"
misc_feature 77883..79061
/locus_tag="Amet_0057"
/note="O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism]; Region: MET17; COG2873"
/db_xref="CDD:32700"
misc_feature 77940..79106
/locus_tag="Amet_0057"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature order(77964..77975,77979..77984,78039..78041,78045..78047,
78123..78128,78132..78137,78204..78206,78219..78221,
78228..78230,78489..78491,78513..78515,78519..78521,
78633..78635,78666..78668,78672..78677,78912..78914)
/locus_tag="Amet_0057"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature order(78126..78134,78204..78206,78330..78332,78417..78419,
78483..78485,78489..78494,78519..78521)
/locus_tag="Amet_0057"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature order(78126..78134,78204..78206,78417..78419,78426..78428,
78483..78485,78489..78494)
/locus_tag="Amet_0057"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature 78492..78494
/locus_tag="Amet_0057"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
misc_binding 79239..79421
/note="Cobalamin riboswitch as predicted by Rfam
(RF00174), score 128.39"
/bound_moiety="adenosylcobalamin"
gene 79684..80958
/locus_tag="Amet_0058"
/db_xref="GeneID:5310101"
CDS 79684..80958
/locus_tag="Amet_0058"
/EC_number="1.2.1.70"
/note="PFAM: glutamyl-tRNA reductase; Shikimate/quinate
5-dehydrogenase;
KEGG: cno:NT01CX_0264 glutamyl-tRNA reductase"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA reductase"
/protein_id="YP_001317960.1"
/db_xref="GI:150387911"
/db_xref="InterPro:IPR000343"
/db_xref="InterPro:IPR006151"
/db_xref="GeneID:5310101"
/translation="MKIIVFGITHKKATIDLREKVAFSQSKKQEAYSLLKESPFIHEA
VILSTCNRSEVFAVVQDTSIARRWFKRFYTDFFQLKETALEGCNHFEKGREAVQYLYH
VCVGVDSLVIGEDQILGQVKEAHAEALDFAATGKILNKLFLEAVTTAKEVKTETAISE
NALSISSIAVKQMENHLKGLVGKTVLVVGFGKMSRIAIENLLCKGIKRLYICNRTKES
VQELIEKHPQIHYLSYDQKYEMLNGVDAVISATGAPHFIFYKEDMEKIYQKHRPMCMI
DIALPRDIDPAVKEIEGIELFHIDDLKEIANENLAYRMDCIEIIKQSINEAIEKYEGW
YQCLPIYPRIQAIKAYSETLTDQELEKLFKRLDHMAEEDRQVIEVVVKSLVKKMWKTP
ILQLKDAGIRGNGEAFAAFVDEFLGLDAGCGK"
misc_feature 79684..80949
/locus_tag="Amet_0058"
/note="glutamyl-tRNA reductase; Reviewed; Region: hemA;
PRK00045"
/db_xref="CDD:178819"
misc_feature 79690..80634
/locus_tag="Amet_0058"
/note="NADP-binding domain of glutamyl-tRNA reductase;
Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213"
/db_xref="CDD:133452"
misc_feature order(79738..79740,79828..79830,80029..80031,80038..80040,
80050..80052,80059..80061,80071..80073)
/locus_tag="Amet_0058"
/note="tRNA; other site"
/db_xref="CDD:133452"
misc_feature order(79828..79833,79837..79839,80008..80010,80023..80025,
80029..80031,80041..80043)
/locus_tag="Amet_0058"
/note="putative tRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:133452"
misc_feature order(80248..80250,80254..80256,80263..80265)
/locus_tag="Amet_0058"
/note="putative NADP binding site [chemical binding];
other site"
/db_xref="CDD:133452"
misc_feature 80653..80940
/locus_tag="Amet_0058"
/note="Glutamyl-tRNAGlu reductase, dimerisation domain;
Region: GlutR_dimer; pfam00745"
/db_xref="CDD:201424"
gene 80971..81699
/locus_tag="Amet_0059"
/db_xref="GeneID:5310102"
CDS 80971..81699
/locus_tag="Amet_0059"
/note="TIGRFAM: siroheme synthase;
KEGG: gka:GK0404 siroheme synthase"
/codon_start=1
/transl_table=11
/product="siroheme synthase"
/protein_id="YP_001317961.1"
/db_xref="GI:150387912"
/db_xref="InterPro:IPR006367"
/db_xref="GeneID:5310102"
/translation="MTKYYPIMLNIEEKKCTVVGGGRVAERKVKSLLEHGAVVTVMSP
TLTDALQEMVRQGQLLHHQKHYETGDLRGSYLVYVATDDLQVSQACHEEASRENILMN
VVDVPRLCDFTVPAIVRRGPLTVAIASDGKSPMLSRKIREELEKRFGQHYEDVLELLG
EMRVQALNEINEIEDRKQLFQQLIYEHDVENLGKKGKEILWREAWQFYEAFKKQLKGC
DKNENNKNRIKSQSAGPSSSRNHY"
misc_feature 80977..81582
/locus_tag="Amet_0059"
/note="Siroheme synthase (precorrin-2
oxidase/ferrochelatase domain) [Coenzyme metabolism];
Region: CysG; COG1648"
/db_xref="CDD:31834"
misc_feature 80989..81318
/locus_tag="Amet_0059"
/note="Putative NAD(P)-binding; Region: NAD_binding_7;
pfam13241"
/db_xref="CDD:205421"
gene 81632..82582
/locus_tag="Amet_0060"
/db_xref="GeneID:5310103"
CDS 81632..82582
/locus_tag="Amet_0060"
/EC_number="2.5.1.61"
/note="TIGRFAM: porphobilinogen deaminase;
PFAM: Porphobilinogen deaminase;
KEGG: bsu:BG10342 porphobilinogen deaminase
(hydroxymethylbilane synthase)"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_001317962.1"
/db_xref="GI:150387913"
/db_xref="InterPro:IPR000860"
/db_xref="GeneID:5310103"
/translation="MRTIKIGSRASQLALVQAEIIINMLKEKFPQYTYEIIKITTLGD
RILDKTLDKIGGKGLFVKEIQKALAEEKIDLAIHSMKDMPGETPEELVLGAITKREDP
RDVLITRENKSLEELPKGAVIGSSSLRRQAQVMALRGDIKVVPIRGNVGTRLGKIETE
SLDGVILAAAGLNRLGLKEKISSYLEIEDFTPAVGQGALGCEARRKDIEMLEMLLAIN
HEETYRCVMAERAFLKLLEGGCHVPIGAYGQQQGQELHMTGMVASSDGRRVIKEQVMG
DIADFQALGIQLGETLIEKGAKEILETVNTDNRIVNTEGS"
misc_feature 81632..82513
/locus_tag="Amet_0060"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature 81641..82513
/locus_tag="Amet_0060"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature order(81662..81664,81677..81679,81869..81886,81890..81892,
81917..81922,81926..81943,82016..82018,82022..82027,
82037..82039,82076..82078,82139..82141,82148..82153,
82199..82222,82274..82276,82295..82297,82304..82306,
82316..82321,82328..82330,82349..82351,82361..82363,
82367..82369,82403..82405,82418..82420,82427..82429,
82436..82438,82442..82444)
/locus_tag="Amet_0060"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature order(81668..81670,81680..81682,81866..81868,81872..81877,
82004..82012,82016..82021,82067..82069,82088..82090,
82127..82135,82142..82144,82151..82153,82208..82210,
82217..82222,82349..82351)
/locus_tag="Amet_0060"
/note="active site"
/db_xref="CDD:29604"
gene 82626..84134
/locus_tag="Amet_0061"
/db_xref="GeneID:5310104"
CDS 82626..84134
/locus_tag="Amet_0061"
/note="TIGRFAM: uroporphyrin-III C-methyltransferase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase; Uroporphyrinogen III synthase HEM4;
KEGG: dsy:DSY2224 hypothetical protein"
/codon_start=1
/transl_table=11
/product="uroporphyrin-III C-methyltransferase"
/protein_id="YP_001317963.1"
/db_xref="GI:150387914"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR003043"
/db_xref="InterPro:IPR003754"
/db_xref="InterPro:IPR006366"
/db_xref="GeneID:5310104"
/translation="MSKGYVYLVGAGPGDEELITVKGLRCIQEADVILYDRLANPALL
KNKRDEAECIDVGKSPKRHAYTQEEINELLVLQAHKGKTVTRLKGGDPYVFGRGGEEA
LALRKARIPFEVVPGITSAIAVPNYGGIPVTHRNVSTSFHVITGHEDPLKEKSSVNYE
ALAKLEGTLVFLMGVGNLEEIVNQLRRYGKPKETPIALVHQGTTAKQRTVTGTLESIV
TVVKEKKITSPSVIVIGEVVRLQDELNWFESLPLHGQRILVTRTREQASQLSTKLKAL
GGDVVEYPTIEIRPAQDIEGVNAKLKRIHQGDYIIFTSVNGVKAFFERLKALKMDVRE
MGPGKLVAIGPATAKALEEKGLLVEVIPETYVAEGIIDCLKESIKEGDKVFLPRANIA
RKALNEGLEALGAQVEEIEIYETVLPVQGEQHLRELLVEGIDWITFTSSSTVQNFMDL
LGKEDRHLLESVKIASIGPITGKTAKKLGLPVDVQAKEYTIAGLVQAMMEVQ"
misc_feature 82641..83342
/locus_tag="Amet_0061"
/note="Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT); Region: SUMT; cd11642"
/db_xref="CDD:212501"
misc_feature 82641..83276
/locus_tag="Amet_0061"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(82662..82664,82731..82739,82890..82898,82905..82916,
82980..82985,82995..82997,83058..83060,83064..83066,
83136..83150,83220..83222,83226..83231,83235..83237,
83307..83318)
/locus_tag="Amet_0061"
/note="active site"
/db_xref="CDD:212501"
misc_feature order(82662..82664,82890..82898,82905..82910,82980..82985,
83139..83141,83220..83222,83226..83231,83310..83318)
/locus_tag="Amet_0061"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212501"
misc_feature order(82674..82691,82695..82697,82896..82898,82902..82910,
82920..82925,82929..82931,82941..82946,82965..82967,
82971..82973,82977..82979,82989..82994,83016..83018,
83022..83030,83040..83054)
/locus_tag="Amet_0061"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212501"
misc_feature 83394..84119
/locus_tag="Amet_0061"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature order(83406..83408,83565..83573,83661..83663,83790..83792,
83862..83864,83868..83870,83940..83954)
/locus_tag="Amet_0061"
/note="active site"
/db_xref="CDD:119440"
misc_feature 83424..84113
/locus_tag="Amet_0061"
/note="Uroporphyrinogen-III synthase HemD; Region: HEM4;
pfam02602"
/db_xref="CDD:202304"
gene 84135..85109
/locus_tag="Amet_0062"
/db_xref="GeneID:5310105"
CDS 84135..85109
/locus_tag="Amet_0062"
/EC_number="4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_001317964.1"
/db_xref="GI:150387915"
/db_xref="InterPro:IPR001731"
/db_xref="GeneID:5310105"
/translation="MDLIQRPRRLRGFEAIRNIVRETTVNTSDLIYPIFVVHGEKIKR
EISALPGQYHLSVDMLAEEIEEISALGIQGIMIFGIPKTKDEAGSEAYHTNGIVQQAV
KEVKKHRPSLLVMTDVCLCQYADHGHCGIIQNGRILNDRTLDVLANIALSHAEAGADV
VAPSDMMDGRVKRIREVLDHNDFEHIPILSYSVKYASAFYGPFRSAAGSSPQFGDRKT
YQMDTGNRRESLREVALDIEEGADMVMVKPALAYLDIIREVKDKFQVPLGAYQVSGEY
AMIKQAAQAGLADETQMMVETLTSIKRAGADIILTYFAKEMAKWIRDQ"
misc_feature 84156..85097
/locus_tag="Amet_0062"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region: ALAD_PBGS;
cd00384"
/db_xref="CDD:88598"
misc_feature order(84156..84158,84165..84170,84201..84203,84273..84275,
84282..84284,84549..84554,84633..84638,84723..84731,
84789..84791,84798..84800,84816..84818,84825..84830,
84882..84896,84966..84968,85020..85022,85032..85034,
85041..85043)
/locus_tag="Amet_0062"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88598"
misc_feature order(84483..84485,84489..84491,84495..84497,84519..84521,
84624..84626,84714..84716,84732..84734,84741..84746,
84759..84761,84780..84782,84792..84794,84873..84875,
84942..84944,84951..84953,85068..85070)
/locus_tag="Amet_0062"
/note="active site"
/db_xref="CDD:88598"
misc_feature order(84714..84716,84873..84875)
/locus_tag="Amet_0062"
/note="Schiff base residues; other site"
/db_xref="CDD:88598"
gene 85091..86413
/locus_tag="Amet_0063"
/db_xref="GeneID:5310106"
CDS 85091..86413
/locus_tag="Amet_0063"
/note="TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase;
PFAM: aminotransferase class-III;
KEGG: chy:CHY_1212
glutamate-1-semialdehyde-2,1-aminomutase"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde-2,1-aminomutase"
/protein_id="YP_001317965.1"
/db_xref="GI:150387916"
/db_xref="InterPro:IPR004639"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:5310106"
/translation="MDKRSIMKYERSQKLFEASQEVIPGGVNSPVRAFSSVGMNPPFI
KRGKGAYIYDEDGNKYIDYVGSWGPLILGHCHPEVVENLKAVLETGTSFGAPTEIELK
IAELITGAIPSVEMIRMVNSGTEATMTALRLARGYTGRNKIVKFNGNYHGHSDGLLIK
AGSGALTHGVPNSPGVTPDVAKNTITAKYNDIEGIMEIFKQQGEEIAAVIIEPIAGNM
GVVPMTNKFAHALRKITEDYGALLIFDEVMTGFRVSFGGAQSLYQIKPDLTCFGKIIG
GGLPVGAFGGKREIMEHLSPVGPVYQAGTLSGNPLAMTAGYTTLSILHNNSGIYEELE
KKAQKLEKGFKKIVKELQIDASFNRVGSMLCMFFTKEKVSDLETASTSNTEIYSQYFR
AMLSRGVYLAPTQFETMFISDAHGDVEINRTIEAAYEGLKEIRNNPSI"
misc_feature 85115..86395
/locus_tag="Amet_0063"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature 85133..86383
/locus_tag="Amet_0063"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(85454..85462,85538..85543,85547..85549,85724..85726,
85823..85825,85829..85834,85907..85909)
/locus_tag="Amet_0063"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(85457..85462,85538..85543,85724..85726,85823..85825,
85832..85834,85907..85909)
/locus_tag="Amet_0063"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 85907..85909
/locus_tag="Amet_0063"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
misc_binding 86468..86650
/note="Cobalamin riboswitch as predicted by Rfam
(RF00174), score 119.93"
/bound_moiety="adenosylcobalamin"
gene 86836..87210
/locus_tag="Amet_0064"
/db_xref="GeneID:5310107"
CDS 86836..87210
/locus_tag="Amet_0064"
/note="PFAM: cobalamin (vitamin B12) biosynthesis CbiX
protein;
KEGG: ppd:Ppro_1299 cobalamin (vitamin B12) biosynthesis
CbiX protein"
/codon_start=1
/transl_table=11
/product="cobalamin (vitamin B12) biosynthesis CbiX
protein"
/protein_id="YP_001317966.1"
/db_xref="GI:150387917"
/db_xref="InterPro:IPR002762"
/db_xref="GeneID:5310107"
/translation="MKRGLFVLAHGSMAQEAGEIVKEIVTMLEGDKSEAFDLLGFGSL
QFSQPDFMQGIDQLVEQGAEEIIIVPMFLFQGNHVKHDIPEELEVLQKKHEKVKFTLG
RPIGADRRIADIIQERAKEALS"
misc_feature 86845..87153
/locus_tag="Amet_0064"
/note="Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal domain.
SirB catalyzes the ferro-chelation of sirohydrochlorin to
siroheme, the prosthetic group of sulfite and nitrite
reductases. CbiX is a cobaltochelatase; Region:
CbiX_SirB_N; cd03416"
/db_xref="CDD:48643"
misc_feature order(86863..86865,87067..87069)
/locus_tag="Amet_0064"
/note="putative active site [active]"
/db_xref="CDD:48643"
gene 87298..88701
/locus_tag="Amet_0065"
/db_xref="GeneID:5310108"
CDS 87298..88701
/locus_tag="Amet_0065"
/note="TIGRFAM: cobyrinic acid a,c-diamide synthase;
PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ
domain protein glutamine amidotransferase;
KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="cobyrinic acid a,c-diamide synthase"
/protein_id="YP_001317967.1"
/db_xref="GI:150387918"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR004484"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:5310108"
/translation="MKRKGAILLAGTHSGVGKTTISLGIMGALKKRGEKVKPFKVGPD
YIDPQFHQYVTGIPSRNLDSHLIDPRVLESLFHKNVGDDEIAVIEGVMGLYDGLGTHR
DQGSSAHISKIVKAPVILIIDGKGMSASAAAMVLGYQAYDKEVDIQGVIINNLSGDKH
YDLLRQAIERDTGIPCIGYLKQQKQIQLASRHLGLIPSMEVPELKEKVAQMVEMIEET
VDVDLLIEIALRWQPSSPKSPEYSRECKDMGTGLNIAYAYDQAFHFYYEDNLDLLREM
NVTLIPFSPLKDTVLPKDIHALYIGGGFPEVFAPELEANEALRREIKKKSEEGLPIYG
ECGGLMYLTKGIKTIEGKVHPMVGIFDVYSEMTQRLQRFGYAEIQVSEESGILKDVGK
VKTHEFHRSRLESQEQNYSYTVQKKRDDKVVDRWQCGLEKNNTLGAYGHIHFYSNLNF
PKAWIEAAKSYKKKCSS"
misc_feature 87298..87882
/locus_tag="Amet_0065"
/note="Dethiobiotin synthetase [Coenzyme metabolism];
Region: BioD; COG0132"
/db_xref="CDD:30481"
misc_feature 87313..88680
/locus_tag="Amet_0065"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:179218"
misc_feature 88057..88662
/locus_tag="Amet_0065"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(88303..88305,88624..88626,88630..88632)
/locus_tag="Amet_0065"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene 88804..89325
/locus_tag="Amet_0066"
/db_xref="GeneID:5310109"
CDS 88804..89325
/locus_tag="Amet_0066"
/note="KEGG: tte:TTE0378 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317968.1"
/db_xref="GI:150387919"
/db_xref="GeneID:5310109"
/translation="MISRNRKKQMDTKMLVKMAMLIALSGIGAMIKIQGSIALDAVPG
FYAALLLGPMAGGIVAFAGHLISALTAGFPMTVPMHLVVAVEMFIIVALFSVVWQKIN
PWVAIIVGILLNGVGAGLLVVPMSILLGLPLNGWALFAVIWMPLLIGSTVNILIAASL
YKIMGKGKSVNGN"
misc_feature 88837..>89088
/locus_tag="Amet_0066"
/note="ECF-type riboflavin transporter, S component;
Region: ECF-ribofla_trS; cl01942"
/db_xref="CDD:211450"
misc_feature 88840..>89085
/locus_tag="Amet_0066"
/note="Protein of unknown function (DUF3816); Region:
DUF3816; pfam12822"
/db_xref="CDD:205090"
gene 89315..90061
/locus_tag="Amet_0067"
/db_xref="GeneID:5310110"
CDS 89315..90061
/locus_tag="Amet_0067"
/note="KEGG: ctc:CTC00742 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317969.1"
/db_xref="GI:150387920"
/db_xref="GeneID:5310110"
/translation="MEIKRCRDLTLIERAGQPNLVIACDSCGGIGEKPQDQIKVPAEV
VGYFTARVSLMEVMSVGARVMTVINTLSVEREPTGEKMIKGIQKMIEEVKLPITALNG
STEENVVTCQTAMGITVIGEVERESIKIGCSKPGDLIVALGTPKVGNEIKLPIDDEIC
SIKDFQALVKMKNVKDIHPIGSKGMYYEAQLLASLNHCEFKSREATGVDLKKSAGPAT
AVIFSVSKEQLPTVESQLQQQVKVIGSLEN"
misc_feature 89447..>89962
/locus_tag="Amet_0067"
/note="AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal
domain...; Region: PurM-like; cl10019"
/db_xref="CDD:209122"
misc_feature order(89468..89470,89480..89482,89609..89617)
/locus_tag="Amet_0067"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100027"
misc_feature order(89480..89482,89510..89512,89519..89521,89528..89530,
89615..89617,89651..89656,89666..89668)
/locus_tag="Amet_0067"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100027"
gene 90100..90975
/locus_tag="Amet_0068"
/db_xref="GeneID:5310111"
CDS 90100..90975
/locus_tag="Amet_0068"
/note="PFAM: GHMP kinase;
KEGG: lin:lin1134 hypothetical protein"
/codon_start=1
/transl_table=11
/product="GHMP kinase"
/protein_id="YP_001317970.1"
/db_xref="GI:150387921"
/db_xref="InterPro:IPR006204"
/db_xref="GeneID:5310111"
/translation="MIEVICPGSCGELIQGMIQGSEKLISYAINCYSKVTLTEGRSPF
LENWSKSQQMIEKVLLYYGYSPKEGEEIGITVDSQIPMGKGMASSTADLAATALAMAT
YLNETITQEEIAILCVEIEPTDSTVFSQLTLFDHLEGKYKKSYEEPMKANVLMLEGVG
SINTIGFRKSNHHRLLKEKESELKEALHFFEKGIKGGDLKLMGKAATLSAFANQEILY
KKELETLFKISEKLGAAGVNVAHSGTVMGILYEENQFDLEAMKVLLKQERFRPYYPAN
KTYEIIQGGPRVITK"
misc_feature 90103..90936
/locus_tag="Amet_0068"
/note="Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: PduX;
COG4542"
/db_xref="CDD:34189"
misc_feature 90667..>90855
/locus_tag="Amet_0068"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:203975"
gene 90992..91612
/locus_tag="Amet_0069"
/db_xref="GeneID:5310112"
CDS 90992..91612
/locus_tag="Amet_0069"
/note="PFAM: Precorrin-8X methylmutase CbiC/CobH;
KEGG: cpr:CPR_1241 precorrin-8X methylmutase"
/codon_start=1
/transl_table=11
/product="precorrin-8X methylmutase CbiC/CobH"
/protein_id="YP_001317971.1"
/db_xref="GI:150387922"
/db_xref="InterPro:IPR003722"
/db_xref="GeneID:5310112"
/translation="MKYIQSPREIERKSFEIITRELEVELPDPQTAPIIKRVIHTTAD
FEYAKLIKIHPEAVEAAQKALQEGCRIYTDTNMVLSGINKRILKKYGGEVYCLVGDPE
VAREAKERGVTRSMVAMEKAMADPETKLFVIGNAPTALFILCQGIQEGKAKPSAIIGV
PVGFVGAQESKELLMEQTVPHITIQGRKGGSTVAVAIVNALLYMLE"
misc_feature 90992..91606
/locus_tag="Amet_0069"
/note="Precorrin isomerase [Coenzyme metabolism]; Region:
CobH; cl00913"
/db_xref="CDD:211443"
misc_feature 91016..91609
/locus_tag="Amet_0069"
/note="Precorrin-8X methylmutase; Region: CbiC; pfam02570"
/db_xref="CDD:202290"
gene 91627..92760
/gene="cbiD"
/locus_tag="Amet_0070"
/db_xref="GeneID:5310113"
CDS 91627..92760
/gene="cbiD"
/locus_tag="Amet_0070"
/note="Catalyzes the methylation of C-1 in
cobalt-precorrin-5 and the subsequent extrusion of acetic
acid from the resulting intermediate to form
cobalt-precorrin-6A"
/codon_start=1
/transl_table=11
/product="cobalt-precorrin-6A synthase"
/protein_id="YP_001317972.1"
/db_xref="GI:150387923"
/db_xref="InterPro:IPR002748"
/db_xref="GeneID:5310113"
/translation="MERYIIKDGKKLRYGYTTGSCATAASKAAAQMLLQPGEVHEVDI
DTPKGWSLKLKVEDIQRSHGAVSCAIIKDAGDDPDVTNKLAIYSKLIWRQDTKIEIHG
GEGVGTVTRPGLQIPVGKPAINPIPLQMIEREVREVIGPGRGVDIVISVPKGQEVAKK
TFNPKLGIQGGISILGTSGIVEPMSEEAMKDSLALELPMAKAEKIKTFVFVPGNYGRD
MAREKYKIHDKNMIKISNFVGFMMDQSVIQNVERILIIGHIGKLVKVAGGIFHTHSKV
ADGRREILAAHLAALGASQQLVLRVLESNTTEEAVGLIQEKGFDRLFSHLADKITEKC
VERTQGNIEIGTIIFSMEQGVLAHCSQAGRLLEILKSEGVKDE"
misc_feature 91636..92721
/gene="cbiD"
/locus_tag="Amet_0070"
/note="cobalt-precorrin-6A synthase; Reviewed; Region:
cbiD; PRK00075"
/db_xref="CDD:178843"
gene 92753..93373
/locus_tag="Amet_0071"
/db_xref="GeneID:5310114"
CDS 92753..93373
/locus_tag="Amet_0071"
/note="TIGRFAM: precorrin-6y C5,15-methyltransferase
(decarboxylating), CbiE subunit;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase
cbiT/cbiE"
/codon_start=1
/transl_table=11
/product="precorrin-6Y C5,15-methyltransferase subunit
CbiE"
/protein_id="YP_001317973.1"
/db_xref="GI:150387924"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR012818"
/db_xref="GeneID:5310114"
/translation="MNKIYVIGLGPGHQDYVLPIAKKRAQECNVLVGGKRNLNIFSDF
EGEMIPIHQDLQGIVVEIKKRARTQQVGIIVSGDPGFYSMLTYLSKHFELEELEVIPG
IGSIQYLFSRLKKPWQNTPFKSLHGRGTDWVGILQKEKSIALLTDPEHNPQWIAEQCI
EYGLSKVKMVVGENLSYSEERIIQGTPAEIKEHGPYQMSVVVIENE"
misc_feature 92759..93322
/locus_tag="Amet_0071"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature 92762..93364
/locus_tag="Amet_0071"
/note="Precorrin-6Y methyltransferase, the cobalamin
biosynthesis enzyme CbiE; Region: Precorrin-6Y-methylase;
cd11644"
/db_xref="CDD:212503"
misc_feature order(92783..92785,92858..92860,92978..92986,92993..93001,
93062..93067,93122..93124,93182..93187,93266..93268,
93272..93277,93344..93352)
/locus_tag="Amet_0071"
/note="active site"
/db_xref="CDD:212503"
misc_feature order(92801..92812,92816..92818,92984..93001,93008..93013,
93017..93022,93047..93049,93053..93064,93068..93073,
93080..93085,93110..93124)
/locus_tag="Amet_0071"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212503"
misc_feature order(92858..92860,92978..92986,92993..92998,93062..93067,
93185..93190,93266..93268,93272..93277,93344..93352)
/locus_tag="Amet_0071"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212503"
gene 93366..93974
/locus_tag="Amet_0072"
/db_xref="GeneID:5310115"
CDS 93366..93974
/locus_tag="Amet_0072"
/note="TIGRFAM: precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit;
KEGG: fnu:FN0964 precorrin-8W decarboxylase"
/codon_start=1
/transl_table=11
/product="precorrin-6Y C5,15-methyltransferase subunit
CbiT"
/protein_id="YP_001317974.1"
/db_xref="GI:150387925"
/db_xref="InterPro:IPR014008"
/db_xref="GeneID:5310115"
/translation="MSRQRQVPMWGVPDEAFIRGRVPMTKAEIRGIIMRKLRLREESI
LVDVGAGTGSVTIEAAMHVSQGSVYAIEYKEEAVELIKKNIEKFQLENIQIMTGRAKE
QLMEIQTFDRMFIGGSEGELQWMIRYAAENLPSKGRIVMTAVTLETAYEGLQFLKQNE
FTEIETISVSIAKGRVVGNRTLMEAENPITVISAERGEQHER"
misc_feature 93405..93959
/locus_tag="Amet_0072"
/note="cobalt-precorrin-6Y C(15)-methyltransferase;
Validated; Region: PRK08287"
/db_xref="CDD:181354"
misc_feature 93498..93803
/locus_tag="Amet_0072"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(93507..93527,93579..93584,93657..93665)
/locus_tag="Amet_0072"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 93964..94686
/locus_tag="Amet_0073"
/db_xref="GeneID:5310116"
CDS 93964..94686
/locus_tag="Amet_0073"
/note="TIGRFAM: precorrin-2 C20-methyltransferase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: mta:Moth_1091 precorrin-2 C20-methyltransferase"
/codon_start=1
/transl_table=11
/product="precorrin-2 C(20)-methyltransferase"
/protein_id="YP_001317975.1"
/db_xref="GI:150387926"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR006364"
/db_xref="GeneID:5310116"
/translation="MKGKLTGIGVGPGEKDLLTLRALDRIKEADIIFCPQVKVGESSI
ALEIVQEYIPQGTIIQGLCFPMTPCPKTLEANWQLNLEAIKKVLDQGKKAVFLTLGDA
LLYSTYNYMVKELQNKNYEVETVPGIPSYSAIASRMNRPLAEGKEVLSILPLNAEPEQ
IKKAFEYGDNLVVLKISHDPQGLKNMIQEADLEACLIVASNFGHENEIITEDTSILDG
KIPYLSTAIITKNRKTKKNRGE"
misc_feature 93973..94650
/locus_tag="Amet_0073"
/note="Precorrin-2 C20-methyltransferase, also named CobI
or CbiL; Region: Precorrin_2_C20_MT; cd11645"
/db_xref="CDD:212504"
misc_feature 93973..94602
/locus_tag="Amet_0073"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(93997..93999,94258..94266,94273..94281,94348..94353,
94363..94365,94483..94488,94558..94560,94564..94569,
94627..94638)
/locus_tag="Amet_0073"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212504"
misc_feature order(93997..93999,94258..94266,94273..94281,94348..94353,
94420..94422,94480..94485,94558..94560,94564..94569,
94633..94638)
/locus_tag="Amet_0073"
/note="active site"
/db_xref="CDD:212504"
misc_feature order(94006..94026,94264..94278,94288..94293,94297..94299,
94333..94335,94339..94347,94354..94362,94366..94371,
94378..94389,94402..94416,94420..94422,94468..94470)
/locus_tag="Amet_0073"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212504"
gene 94679..95446
/locus_tag="Amet_0074"
/db_xref="GeneID:5310117"
CDS 94679..95446
/locus_tag="Amet_0074"
/note="TIGRFAM: precorrin-4 C11-methyltransferase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: fnu:FN0957 precorrin-4 C11-methyltransferase"
/codon_start=1
/transl_table=11
/product="precorrin-4 C(11)-methyltransferase"
/protein_id="YP_001317976.1"
/db_xref="GI:150387927"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR003043"
/db_xref="InterPro:IPR006362"
/db_xref="GeneID:5310117"
/translation="MSKVEKVFFVGAGPGDPELLTMKGHRVIGSADVIIYAGSLVNPK
VLDHRKESAEIHNSAKLTLETVIQLIKKAVDEGKQVARVHTGDPSLYGAIQEQMDLLD
GYKIPYEVIPGVSSFMAAAAALKRELTLPDVTQTVILTRLEGRTPVPEKEALKELASH
QASMAIFLSVHMMEGVVEQLLESYPEDTPIAVVQRASWPDEKMVIGTLKDIAKKVQEA
NITKTAQILVGRFLNTEYERSKLYDPTFSHEYREATK"
misc_feature 94694..95314
/locus_tag="Amet_0074"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature 94697..95377
/locus_tag="Amet_0074"
/note="Precorrin-4 C11-methyltransferase (CbiF/CobM);
Region: Precorrin-4_C11-MT; cd11641"
/db_xref="CDD:212500"
misc_feature order(94718..94720,94796..94798,94931..94939,94946..94948,
95021..95026,95174..95182,95255..95257,95261..95266,
95345..95353)
/locus_tag="Amet_0074"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212500"
misc_feature order(94718..94720,94931..94939,94946..94954,95021..95026,
95099..95101,95174..95179,95255..95257,95261..95266,
95348..95353)
/locus_tag="Amet_0074"
/note="active site"
/db_xref="CDD:212500"
misc_feature order(94724..94726,94730..94747,94751..94753,94865..94867,
94937..94966,94970..94975,94982..94984,95006..95008,
95012..95023,95027..95032,95039..95044,95051..95053,
95057..95065,95075..95101,95120..95125,95129..95134,
95144..95149,95153..95158)
/locus_tag="Amet_0074"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212500"
gene 95443..96507
/locus_tag="Amet_0075"
/db_xref="GeneID:5310118"
CDS 95443..96507
/locus_tag="Amet_0075"
/note="PFAM: cobalamin (vitamin B12) biosynthesis CbiG
protein;
KEGG: fnu:FN0952 cobalamin biosynthesis protein G"
/codon_start=1
/transl_table=11
/product="cobalamin (vitamin B12) biosynthesis protein
CbiG"
/protein_id="YP_001317977.1"
/db_xref="GI:150387928"
/db_xref="InterPro:IPR002750"
/db_xref="GeneID:5310118"
/translation="MKIAIIALTKGGKTLALVLQEFLEESHLYLKGPLPLGEKNVFAV
GEDFKRCVAQLFSAYDILVFIMATGIVVRSIAPLLQHKSQDPGVLVMDEKGQNVISLL
SGHWGRANEMTQRVATMINANPVITTASDVQGRVAVDLLAQQLNCEIADWQLTKTLTA
HIVNDGIIGLYCEDNRALVLPEGYVRVSKQKDLEDHDYGIIISNQSRLGKRARDLQLY
PRNLVIGIGCRKKVSPQLMIEKIKASLKNLDKSTHSIEKFVTVEVKKEEKAIIEASAH
FNVPLEIIDIETIKKSQTSLHQFETSAFVEKTIGVGAVSGPCAYIGSQGGHMLMEKEK
GDGITLSIAEVKVSEASERK"
misc_feature 95443..96480
/locus_tag="Amet_0075"
/note="cobalamin biosynthesis protein CbiG; Validated;
Region: PRK05788"
/db_xref="CDD:180260"
misc_feature 95596..95835
/locus_tag="Amet_0075"
/note="Cobalamin synthesis G N-terminal; Region: CbiG_N;
pfam11760"
/db_xref="CDD:204736"
misc_feature 95845..96099
/locus_tag="Amet_0075"
/note="Cobalamin biosynthesis central region; Region:
CbiG_mid; pfam11761"
/db_xref="CDD:204737"
misc_feature 96106..96474
/locus_tag="Amet_0075"
/note="Cobalamin synthesis G C-terminus; Region: CbiG_C;
pfam01890"
/db_xref="CDD:202030"
gene 96579..97319
/locus_tag="Amet_0076"
/db_xref="GeneID:5310119"
CDS 96579..97319
/locus_tag="Amet_0076"
/note="TIGRFAM: precorrin-3B C17-methyltransferase;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase;
KEGG: gme:Gmet_0485 cobyric acid synthase
CobQ:precorrin-3B C17-methyltransferase region"
/codon_start=1
/transl_table=11
/product="precorrin-3B C(17)-methyltransferase"
/protein_id="YP_001317978.1"
/db_xref="GI:150387929"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR006363"
/db_xref="GeneID:5310119"
/translation="MKKNGKVFVIGIGPGDEAYRAPAATRALMKSDTIIGYKTYIELI
EETLEGKEVIDSGMRKEVERCQLALTLAEEGKVVSLVSSGDPGIYGMAGALLQVKQQR
QSDIEVEVIPGITAVSAAAALLGAPLMHDFAVISLSDLLTDWELIQKRVALAGEGDFV
IALYNPKSKGRTIQIEETQKILLKYRSKETPVGIVKNGTRQGEVVIVTTLGEMLLHPI
DMLTVVIIGNSHTTMMNDVMITPRGYGI"
misc_feature 96591..97310
/locus_tag="Amet_0076"
/note="Precorrin-3B C(17)-methyltransferase (CobJ/CbiH);
Region: Precorrin_3B_C17_MT; cd11646"
/db_xref="CDD:212505"
misc_feature 96594..97220
/locus_tag="Amet_0076"
/note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region:
TP_methylase; pfam00590"
/db_xref="CDD:201330"
misc_feature order(96618..96620,96825..96833,96840..96848,96921..96926,
96984..96986,97065..97070,97161..97163,97167..97172,
97242..97247)
/locus_tag="Amet_0076"
/note="active site"
/db_xref="CDD:212505"
misc_feature order(96618..96620,96825..96833,96840..96845,96921..96926,
96936..96938,97068..97076,97161..97163,97167..97172,
97176..97178,97236..97247)
/locus_tag="Amet_0076"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:212505"
misc_feature order(96624..96626,96636..96647,96831..96833,96837..96845,
96855..96857,96864..96869,96900..96902,96906..96908,
96912..96923,96930..96932,96951..96956,96960..96986,
97023..97025,97050..97055,97260..97262,97272..97277,
97287..97289,97293..97295,97302..97304)
/locus_tag="Amet_0076"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212505"
gene 97316..98092
/locus_tag="Amet_0077"
/db_xref="GeneID:5310120"
CDS 97316..98092
/locus_tag="Amet_0077"
/note="TIGRFAM: precorrin-6x reductase;
PFAM: Precorrin-6x reductase CbiJ/CobK;
KEGG: mta:Moth_1223 precorrin-6x reductase"
/codon_start=1
/transl_table=11
/product="precorrin-6x reductase"
/protein_id="YP_001317979.1"
/db_xref="GI:150387930"
/db_xref="InterPro:IPR003723"
/db_xref="GeneID:5310120"
/translation="MILLLCGTVEGRQVLHELLKRKIQVLATVTTSYGADLLKQEGQV
TVLEERLDQEGMEALLKGHPIQAVVDVTHPYAQQISKLAMGVCAEKDIPYLRYERGQV
TCGDQGLKMVKDFKEAAQEAKKYQGSIFLTIGSKEIPTFLEEINVERLIARVLPLSSM
VKACEDYGFTPDNLIAMKGPFSEAMNQELFRQYCPSVIITKDSGMAGGTQEKIRAAQK
LNIPIIVVQRPIMNYGQTHENTKELIQAVQKVMKFEEATT"
misc_feature 97316..98083
/locus_tag="Amet_0077"
/note="Precorrin-6x reductase [Coenzyme metabolism];
Region: CobK; COG2099"
/db_xref="CDD:32282"
misc_feature 97316..98062
/locus_tag="Amet_0077"
/note="cobalt-precorrin-6x reductase; Reviewed; Region:
PRK08057"
/db_xref="CDD:181213"
gene 98625..99125
/locus_tag="Amet_0078"
/db_xref="GeneID:5310121"
CDS 98625..99125
/locus_tag="Amet_0078"
/note="KEGG: ctc:CTC00217 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317980.1"
/db_xref="GI:150387931"
/db_xref="GeneID:5310121"
/translation="MAAMIRHTASEPKKPFWQTMLKIIGALLVINLFVELTNFMPKNY
ASIASVMILLISTGLTSYLINRNLAKYTYILIEDDLIFYKEIGSKEKKVLDVKIYDIQ
WIKPIQALDKQEKCNKTYGIACRLKGKGVYVGQYENDGKINRFIFQPSEGLLEELQKQ
ITVANQ"
gene 99267..99452
/locus_tag="Amet_0079"
/db_xref="GeneID:5310122"
CDS 99267..99452
/locus_tag="Amet_0079"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317981.1"
/db_xref="GI:150387932"
/db_xref="GeneID:5310122"
/translation="MGEGLKCYVCNRENNTGIVVLNEYICGSCEKEMLYIETDQLKYE
LFKKKIKEIWKKGLQVS"
misc_feature 99282..99404
/locus_tag="Amet_0079"
/note="Inhibitor of sigma-G Gin; Region: Gin; pfam10764"
/db_xref="CDD:204552"
gene complement(99506..99682)
/locus_tag="Amet_0080"
/db_xref="GeneID:5310123"
CDS complement(99506..99682)
/locus_tag="Amet_0080"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317982.1"
/db_xref="GI:150387933"
/db_xref="GeneID:5310123"
/translation="MNGDRITNLKEFVTAYGGRKSDIEIAEMLEAPIDQVKSERRKLS
FDTFKTKISIHHKK"
gene 99846..101276
/locus_tag="Amet_0081"
/db_xref="GeneID:5310124"
CDS 99846..101276
/locus_tag="Amet_0081"
/note="PFAM: Orn/Lys/Arg decarboxylase, major region;
Orn/Lys/Arg decarboxylase domain protein; Soluble liver
antigen/liver pancreas antigen;
KEGG: tte:TTE0093 Arginine/lysine/ornithine
decarboxylases"
/codon_start=1
/transl_table=11
/product="Orn/Lys/Arg decarboxylase, major region"
/protein_id="YP_001317983.1"
/db_xref="GI:150387934"
/db_xref="InterPro:IPR000310"
/db_xref="InterPro:IPR008286"
/db_xref="InterPro:IPR008829"
/db_xref="GeneID:5310124"
/translation="MSEVPILDRLLQLQKQDIVSFHVPGHKNGKIYHQFPYKNFTDFL
MHIDTTEIPGTDNLHNPKEIIKEAQERASRAFHSKETFFLVNGSTSGIYSMVMACTEP
GDKIIVDRNCHQSVINSTILGDLNPVYLYPEIEIEQGISLGVSPQAVEQMIQEHLDAK
AMIITYPTYHGITSDLKKIAEIVHKYDKILLIDEAHGAHFGLSQQLPATALACGADAV
VQSTHKTLPSFTQSSMLHIQGDRIDRNKLKTMLRIHQSSSPSYLLLASLDLATMIYDT
QGKYLMEQLLQHITYFKAELADIEGIEILGGENHDATRLWISLKHLGVTGYQLEKRLR
DQYQIQMELANIYGVLGVATIGNQRRDFDRLIKALKNIAQEKGNQRIKEMPPFTYRIP
KQVLRPGEALHKRKETIPLLEARGQISGEYVIPYPPGIPIVIPGEVIDKEMIQYIDLM
VQEGMEIVGMKDASYKTIQIIKADEI"
misc_feature 99846..101273
/locus_tag="Amet_0081"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:32165"
misc_feature 99858..100733
/locus_tag="Amet_0081"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature order(100107..100112,100119..100121,100338..100340,
100422..100424,100431..100433,100506..100508,
100515..100517)
/locus_tag="Amet_0081"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 100515..100517
/locus_tag="Amet_0081"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 101366..102001
/locus_tag="Amet_0082"
/db_xref="GeneID:5310125"
CDS 101366..102001
/locus_tag="Amet_0082"
/EC_number="2.7.4.9"
/note="PFAM: thymidylate kinase;
KEGG: lga:LGAS_0372 thymidylate kinase"
/codon_start=1
/transl_table=11
/product="dTMP kinase"
/protein_id="YP_001317984.1"
/db_xref="GI:150387935"
/db_xref="InterPro:IPR000062"
/db_xref="GeneID:5310125"
/translation="MKNGLFISFEGVDGAGKSTQIHYAKDFFEERGYKVSLTREPGGT
RISEIIREAILDRTHQEMTHRTEALLYAASRAQHVEEFILPALAEGRVVLCDRFVDSS
MVYQGRGRGLGFDAVRNINQFATGGLEPDLTIFFNIHPQVSLGRINVKEKGDRLEQEK
MAFHYTVYESYHDLAQMNSSRIKVIEANQEVEKIKSEVEKIMTNLLRRDEA"
misc_feature 101369..101932
/locus_tag="Amet_0082"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:179089"
misc_feature 101378..101932
/locus_tag="Amet_0082"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:30190"
misc_feature order(101417..101419,101576..101578,101588..101590,
101651..101656,101678..101680,101813..101815)
/locus_tag="Amet_0082"
/note="TMP-binding site; other site"
/db_xref="CDD:30190"
misc_feature order(101420..101422,101801..101803,101924..101926)
/locus_tag="Amet_0082"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30190"
gene 101998..102327
/locus_tag="Amet_0083"
/db_xref="GeneID:5310126"
CDS 101998..102327
/locus_tag="Amet_0083"
/note="PFAM: protein of unknown function DUF970;
KEGG: cac:CAC0299 protein from nitrogen regulatory protein
P-II (GlnB) family, ortholog YAAQ B.subtilis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317985.1"
/db_xref="GI:150387936"
/db_xref="InterPro:IPR010375"
/db_xref="GeneID:5310126"
/translation="MKLVIAIVHDDDVHALLDDLTANQFRVTKLATTGGFLKSGNTTI
LVGVDDDKVDEVISSIKDNCESREQIATSPAPVSGATGVFIPYPIEVRVGGATVFVVD
VEKYAKL"
misc_feature 101998..102324
/locus_tag="Amet_0083"
/note="Protein of unknown function (DUF970); Region:
DUF970; pfam06153"
/db_xref="CDD:114848"
gene 102347..103336
/locus_tag="Amet_0084"
/db_xref="GeneID:5310127"
CDS 102347..103336
/locus_tag="Amet_0084"
/EC_number="2.7.7.7"
/note="TIGRFAM: DNA polymerase III, delta prime subunit;
KEGG: tte:TTE0097 ATPase involved in DNA replication"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_001317986.1"
/db_xref="GI:150387937"
/db_xref="InterPro:IPR004622"
/db_xref="GeneID:5310127"
/translation="MAFENIVGQAHVIKLLKQSIKQNTVGHGYIFEGIEGLGKHLVAF
ELAKALCCTGTGDQPCNQCNSCKKLSHQNHPDVIWITGEGSIKINTIRDLQKDTQQKP
YESRKKVYIIEKAEKMTVQAQNALLKTLEEPPSYVTLILLTANSHSLLPTITSRCQII
KFQPVPLDVIQAFLMLEKNVDLEKAKLMATLSNGVVGKALKLLEDPSFQNQREGLIQI
SKDLFKKDKVAALQKFSFFEDHKESIEEILELYLVWYRDLLVYRDTQNKVLMFNIDQV
EEIISQSNRIDLKKISNIISIIENTKENVRRNVQFQLNIEVMLLNIQEVLSSW"
misc_feature 102371..103321
/locus_tag="Amet_0084"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08058"
/db_xref="CDD:181214"
misc_feature 102443..102466
/locus_tag="Amet_0084"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(102446..102469,102683..102685)
/locus_tag="Amet_0084"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <102665..>102910
/locus_tag="Amet_0084"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 102671..102688
/locus_tag="Amet_0084"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 102812..102814
/locus_tag="Amet_0084"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 103330..104226
/locus_tag="Amet_0085"
/db_xref="GeneID:5310128"
CDS 103330..104226
/locus_tag="Amet_0085"
/note="PFAM: PSP1 domain protein;
KEGG: ctc:CTC00222 tpl protein"
/codon_start=1
/transl_table=11
/product="PSP1 domain-containing protein"
/protein_id="YP_001317987.1"
/db_xref="GI:150387938"
/db_xref="InterPro:IPR007557"
/db_xref="GeneID:5310128"
/translation="MVTVVGIRFKKAGKIYYFDPTEFEVSKNKNVIVETVRGVEFGEV
VVGPKEVLEEDIIAPLKKVIRIATEEDEKIHDENKAKEKEAFEICIEKVEKHQLEMKL
VDVEFTFDNNKIIFYFTADGRVDFRELVKDLASVFRTRIELRQIGVRDEAKMLGGIGP
CGRSLCCATWLGDFEPVSIKMAKEQNLSLNPAKISGICGRLFCCLKYEHDMYQQILAK
LPGTGSIVLTPDGEGIVLDTNVLLELVKVKVRNGDNGAEEVKSYFLHDVTKIKVVQKK
AQQDDLEIPEELKDELKNLEQK"
misc_feature 103330..104088
/locus_tag="Amet_0085"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:31960"
gene 104393..105001
/locus_tag="Amet_0086"
/db_xref="GeneID:5310129"
CDS 104393..105001
/locus_tag="Amet_0086"
/note="PFAM: alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen; Redoxin domain protein;
KEGG: ctc:CTC00146 thiol:disulfide interchange protein
TlpA"
/codon_start=1
/transl_table=11
/product="alkyl hydroperoxide reductase"
/protein_id="YP_001317988.1"
/db_xref="GI:150387939"
/db_xref="InterPro:IPR000866"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR011594"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:5310129"
/translation="MPMKKGYKKVQIMILIMVLLLIIAGCRRTIGPEEVEDNQPPTEQ
EMTEEETQDIEEAPIEEGPLQFTLENQRQEEVTLSELKGKPIFLTFWVSWDEDSKEQL
EVLHNLQRLLEEDVSFVGVNATTFETAEHKDILAYLEEQEYEFHIVFDDEGEVQDAYY
VGSFPTTFLLDESGEVVQLFTTLMKEDKMIEALEPVLEKLLP"
misc_feature 104585..104935
/locus_tag="Amet_0086"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:48515"
misc_feature order(104675..104677,104684..104686)
/locus_tag="Amet_0086"
/note="catalytic residues [active]"
/db_xref="CDD:48515"
gene 105104..105847
/locus_tag="Amet_0087"
/db_xref="GeneID:5310130"
CDS 105104..105847
/locus_tag="Amet_0087"
/note="Heat shock-induced"
/codon_start=1
/transl_table=11
/product="putative RNA polymerase sigma factor SigI"
/protein_id="YP_001317989.1"
/db_xref="GI:150387940"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR014244"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:5310130"
/translation="MTKLFKILKKRKTIEERIRDIQEGNEEEKNSIIQEHIPFIKKIL
SQQLGRYIEIENDDMFSIGLMAFNEAIDKYETSRGKFLSFAAIVIKNRSIDQLRKQSR
TSNEVIVSQMIGDDGEASSTDHMASVESFENRVEAKVDMGIFIKRMAEFQVTLDDLIN
EAPRHMDTRLNAIKIGRYVHENHQLKEKLLRRKKLPTSELMKELMVSKKVVQGSRKFI
IAVILILDSNLDTMKEYISQVEGGDYIDE"
misc_feature 105131..105835
/locus_tag="Amet_0087"
/note="putative RNA polymerase sigma factor SigI;
Reviewed; Region: PRK08311"
/db_xref="CDD:181376"
misc_feature 105197..105412
/locus_tag="Amet_0087"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
gene 105840..106865
/locus_tag="Amet_0088"
/db_xref="GeneID:5310131"
CDS 105840..106865
/locus_tag="Amet_0088"
/note="KEGG: cth:Cthe_2974 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317990.1"
/db_xref="GI:150387941"
/db_xref="GeneID:5310131"
/translation="MNKGCVMEIRKNTMVIMTDDCLFTEIKKKRQAEVGTEILFHSTE
IVNPKKGKIQPWMLMAASVLLVLITSLYGINLWQMNYQVHALLTVDINPSIQMEVNAN
NKVIKVTPLNEDAKTLPLQELKNQSVELALEELVNLSKEQGYIPFGDENYILVARILL
KESKANLTGLQALIEIGKERIEQTAVEQGESISVVTIEAEVESLKKATEDKISVGKLE
MYEKVRATTPEDIDMEEIKEKSIGEMMKQIDKAHPVFDEHPGNQKKNQDQLKEHPVFN
EHPGNREKDNKQEQLDKKDNQDRQGKQDEKNEQGEKVQKGQKNHPVFEQHPGNQNKSR
GKGTGPN"
misc_feature 105858..106025
/locus_tag="Amet_0088"
/note="Anti-sigma factor N-terminus; Region: RsgI_N;
pfam12791"
/db_xref="CDD:205073"
gene 106957..107799
/locus_tag="Amet_0089"
/db_xref="GeneID:5310132"
CDS 106957..107799
/locus_tag="Amet_0089"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001317991.1"
/db_xref="GI:150387942"
/db_xref="GeneID:5310132"
/translation="MKKFLAGAFALLMFVSFAATASAFVPPGLAKKQGLPPGLEEKAG
ELPPGIQKRFGDIEELQKGLAYEYNKTILQMDADNRRIVIEEGTAQLHLLVADNAKIE
LDGKIVSFKDLYKNDEVQLKLNDELTIIEIIGSKGKDRIPAEKYEEVKGKIDAINSTR
REITVISDNTKRLYDIDSNAKIWIDDASSRLTRLEKGMEVTLKIEEDKVVEIYGFSDI
QTHEGRLMSVKITEEENIIILRIGEENRTFTVEKRIDLSEISLGATIRIQVKNNEVYR
LAEK"
gene 107951..108718
/locus_tag="Amet_0090"
/db_xref="GeneID:5310133"
CDS 107951..108718
/locus_tag="Amet_0090"
/note="PFAM: methyltransferase small; Methyltransferase
type 11;
KEGG: cth:Cthe_2102 methyltransferase small"
/codon_start=1
/transl_table=11
/product="methyltransferase small"
/protein_id="YP_001317992.1"
/db_xref="GI:150387943"
/db_xref="InterPro:IPR007848"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:5310133"
/translation="MEELLKENERIDDLQINDLKLIQNPQWFCFGIDAVLLANFVTLK
KNARVVDLGTGTGIIPILLAGKSESSHVTGIEIQEEVAEMAQRSVKLNGLECRIDILP
MDLKEAPQVLPVNSFDVVTSNPPYMHGQGLKNQEDKKTISRHEVKCNLEDVIRTASKL
LKQHGKLFLIHRPQRIVDILVFCRQYKLEPKQLRLIHSTYDKKPNLMLLEAKKDANPE
LKFLDPLYVYDQEGKYTSEIHEIYGKNHIEKGANTNG"
misc_feature 107960..108676
/locus_tag="Amet_0090"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:33880"
misc_feature 108092..108460
/locus_tag="Amet_0090"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(108104..108124,108176..108181,108257..108265,
108317..108319)
/locus_tag="Amet_0090"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 108711..109550
/locus_tag="Amet_0091"
/db_xref="GeneID:5310134"
CDS 108711..109550
/locus_tag="Amet_0091"
/note="PFAM: Uroporphyrin-III C/tetrapyrrole
(Corrin/Porphyrin) methyltransferase;
KEGG: tte:TTE0104 predicted methyltransferases"
/codon_start=1
/transl_table=11
/product="uroporphyrin-III C/tetrapyrrole
methyltransferase"
/protein_id="YP_001317993.1"
/db_xref="GI:150387944"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR008189"
/db_xref="InterPro:IPR008190"
/db_xref="GeneID:5310134"
/translation="MDKGKLYICPTPIGNLEDITLRVLNTLKAVDVIAAEDTRHTLRL
LNHFEIQKPLTSYHEHNRMSKGPQLVNKLLQGEKIALVSDAGMPGISDPGEDLIKLCI
EEDIPVEVLPGATAGILALVASGLDARRFSFEGFLDRDKKKKKERLEQIKHEDRTLIF
YEAPHRLKETLKSLSEVLGNRQAVVGRELTKKFEEFIRGDFETLLAHFQENPPRGEIV
LLCEGGVPSDHQEEAFKDLTIQEHLIQLIEAGMDKKQAIKEVAKARKVPKRDVYQESI
ELP"
misc_feature 108711..109544
/locus_tag="Amet_0091"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 108726..109379
/locus_tag="Amet_0091"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(108747..108749,108963..108971,108978..108983,
109053..109058,109191..109193,109266..109268,
109272..109277,109356..109364)
/locus_tag="Amet_0091"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(108765..108776,108780..108782,108969..108986,
108993..108998,109002..109007,109038..109040,
109044..109055,109059..109064,109071..109076,
109101..109115)
/locus_tag="Amet_0091"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene complement(109662..109901)
/locus_tag="Amet_0092"
/db_xref="GeneID:5310135"
CDS complement(109662..109901)
/locus_tag="Amet_0092"
/note="TIGRFAM: transcriptional regulator, AbrB family;
PFAM: SpoVT/AbrB domain protein;
KEGG: cth:Cthe_2100 transcriptional regulator, AbrB
family"
/codon_start=1
/transl_table=11
/product="AbrB family transcriptional regulator"
/protein_id="YP_001317994.1"
/db_xref="GI:150387945"
/db_xref="InterPro:IPR006339"
/db_xref="InterPro:IPR007159"
/db_xref="GeneID:5310135"
/translation="MKSTGIVRKVDELGRIVLPIELRRTLTIAEKDSLEIYVDGESII
LKKYEPACIFCGNAKDVTVYKTKNVCEDCLEEFRK"
misc_feature complement(109749..109880)
/locus_tag="Amet_0092"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 110289..111707
/locus_tag="Amet_0093"
/db_xref="GeneID:5310136"
CDS 110289..111707
/locus_tag="Amet_0093"
/note="TIGRFAM: metal dependent phophohydrolase;
PFAM: Polynucleotide adenylyltransferase region;
metal-dependent phosphohydrolase, HD sub domain;
SMART: metal-dependent phosphohydrolase, HD region;
KEGG: tte:TTE0109 tRNA nucleotidyltransferase/poly(A)
polymerase"
/codon_start=1
/transl_table=11
/product="polynucleotide adenylyltransferase/metal
dependent phosphohydrolase"
/protein_id="YP_001317995.1"
/db_xref="GI:150387946"
/db_xref="InterPro:IPR002646"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR006675"
/db_xref="GeneID:5310136"
/translation="MNKIIACILETGKVSNIDIYLVGGSIRDFLLNRNIKDLDLIIKE
DPGRFAEKIAKELQGSYFVLDQDRGIHRVKVKDGITIDLAKFQGEDILADLAKRDYTI
NAMAYPLESGWPIDESQLIDPYGGQQDIKEKVIRQISEKNFQQDPIRMLRGPRLMGQL
DFEMDDETKKSIQRNCLLINEAPGERIATEIFTLLGEENTHEYLEFLDKELHVLDKIF
PEIINMKDVGQCKYHVVDCWTHSLYTMRIAEMVIYHQGFFENHIREAYEVHTSKKVAG
EHTRLQLIKLGALFHDIGKPSAQKVDETGRVRFRGHEITGAEIVKVYGEKLKLSVKEQ
QMLYRYIELHMGPLVLYKSNDVSGKALYKLFKEMGEETLDILLIAFADIVATRKLLDP
EEEMGMFKIHIEYIANNYITRYKPIENISHIISGKEIMETLNLPEGILVGEIVEEVKK
AIYFGKIPPEKERVLKYIKEIY"
misc_feature 110289..110684
/locus_tag="Amet_0093"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(110355..110360,110367..110372,110397..110399,
110403..110405,110490..110492,110532..110534,
110547..110549,110577..110588,110595..110597)
/locus_tag="Amet_0093"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(110355..110360,110367..110369,110397..110399,
110403..110405,110577..110585,110595..110597)
/locus_tag="Amet_0093"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(110397..110399,110403..110405,110532..110534)
/locus_tag="Amet_0093"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 110769..110963
/locus_tag="Amet_0093"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
misc_feature 111135..111446
/locus_tag="Amet_0093"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(111159..111164,111432..111434)
/locus_tag="Amet_0093"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 111162..111164
/locus_tag="Amet_0093"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene complement(111825..113273)
/locus_tag="Amet_0094"
/db_xref="GeneID:5310137"
CDS complement(111825..113273)
/locus_tag="Amet_0094"
/note="TIGRFAM: putative nicotinate
phosphoribosyltransferase;
PFAM: Nicotinate phosphoribosyltransferase and related;
KEGG: dsy:DSY0787 nicotinate phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="putative nicotinate phosphoribosyltransferase"
/protein_id="YP_001317996.1"
/db_xref="GI:150387947"
/db_xref="InterPro:IPR006405"
/db_xref="InterPro:IPR007229"
/db_xref="GeneID:5310137"
/translation="MRNHTLLTDLYQLTMMNGYFENNSHEDTVIFDLFFRKNPCNNSF
TIIAGIEQVIDYIENLGFTEEDIQYLRSLNLFGEAFLDMLKQFTFTGTIYGVQEGSIM
FPHEPILRVKASVLQAQLIETALLNMINFQSLIATKASRIVEAAKGDPVFEFGLRRAQ
GPDAGIYGARAAVIGGCVATSNILAGKLFDLPVVGTHAHSWIQKFDSELEAFRAYAKA
YPDKCLLLVDTYDTLKSGIPNALTVFNELREKGYEPKGIRIDSGDLAYISKQARRMLD
DAGYEKVGIVASSDLDEDTIDSLKLQGASINSWGVGTNLITSKDCPALGGVYKLSAVE
KSGTLIPKMKLSDNPGKITNPGYKKVIRIYEAENNRAQADLILLEEEEIDTTKPLTIF
HPLYTWKKKTFSNYKVREMLMPIYEDGKLVYPRKTVNEIRAYVRQELSTLWPEYKRLN
RPQLYKVDLSQKLWSLKHNMIQSLKKDKKDDE"
misc_feature complement(111885..113273)
/locus_tag="Amet_0094"
/note="nicotinate phosphoribosyltransferase; Validated;
Region: PRK09243"
/db_xref="CDD:181722"
misc_feature complement(112284..113258)
/locus_tag="Amet_0094"
/note="Nicotinate phosphoribosyltransferase (NAPRTase),
subgroup A. Nicotinate phosphoribosyltransferase catalyses
the formation of NAMN and PPi from 5-phosphoribosy
-1-pyrophosphate (PRPP) and nicotinic acid, this is the
first, and also rate limiting, reaction...; Region:
NAPRTase_A; cd01570"
/db_xref="CDD:29617"
misc_feature complement(order(112326..112328,112335..112340,
112344..112346,112407..112412,112494..112496,
112731..112736,112800..112808))
/locus_tag="Amet_0094"
/note="active site"
/db_xref="CDD:29617"
gene 113529..114104
/locus_tag="Amet_0095"
/db_xref="GeneID:5310138"
CDS 113529..114104
/locus_tag="Amet_0095"
/note="PFAM: nucleoside recognition domain protein;
KEGG: mta:Moth_1356 nucleoside recognition"
/codon_start=1
/transl_table=11
/product="nucleoside recognition domain-containing
protein"
/protein_id="YP_001317997.1"
/db_xref="GI:150387948"
/db_xref="InterPro:IPR011642"
/db_xref="GeneID:5310138"
/translation="MNHIWFFMIMVAMGVAIFTGRGEIISEVILSDSQEAVMFAISLT
GIMVVWLGLMNIAKESGLINGFARLMTPITRILFPDIPPNHPAISAMMMNFVANLFGA
GNSATALGLKAMEELQTLNKKKKVASNAMCLFLVINMSSIQLIPLTVLKIRADAGSAM
PTEIIGPGMIATAISTVVGIVTCKLLERGEG"
misc_feature 113529..114092
/locus_tag="Amet_0095"
/note="Nucleoside recognition; Region: Gate; cl00486"
/db_xref="CDD:207074"
gene 114104..114640
/locus_tag="Amet_0096"
/db_xref="GeneID:5310139"
CDS 114104..114640
/locus_tag="Amet_0096"
/note="PFAM: nucleoside recognition domain protein;
KEGG: ctc:CTC00239 spore maturation protein B"
/codon_start=1
/transl_table=11
/product="nucleoside recognition domain-containing
protein"
/protein_id="YP_001317998.1"
/db_xref="GI:150387949"
/db_xref="InterPro:IPR011642"
/db_xref="GeneID:5310139"
/translation="MEAMAMVSILAIPAMITVILLHGWIKKVPLYDSFVAGGKEGFQT
AVRIMPYLVAIFLAIGLMRKSGAMDYLIQLLMPLARLVGIPSEVLPLTLMRPLSGSGS
LVILKDIIGTYGADSFPGRVAATMMGSAETIFYTMAVYFGAIGVQRSRHTVPAALIAH
FASVIASVVVWSVLLRRL"
misc_feature 114146..114580
/locus_tag="Amet_0096"
/note="Uncharacterized membrane protein [Function
unknown]; Region: SpmB; COG0700"
/db_xref="CDD:31044"
gene 114705..115664
/locus_tag="Amet_0097"
/db_xref="GeneID:5310140"
CDS 114705..115664
/locus_tag="Amet_0097"
/note="PFAM: peptidase S58, DmpA;
KEGG: cno:NT01CX_1082 peptidase family T4"
/codon_start=1
/transl_table=11
/product="peptidase S58, DmpA"
/protein_id="YP_001317999.1"
/db_xref="GI:150387950"
/db_xref="InterPro:IPR005321"
/db_xref="GeneID:5310140"
/translation="MKRGIVDVPGIKVGHASDFQGQTGCTVVIYEEGAVAGVDIRGGA
PGSRETALLDPVNMIEKVHSIVLAGGSAFGLDAASGVMKYLEERQVGFDVGVTKVPIV
PCSVLFDLAIGDYRARPDQAMGYLAAEEANQDEYRQGLIGAGTGATVGKILGNDRVMR
GGIGTWSIQVGELIVGAIVAVNAFGDIVNPGTQEIIAGAKAEDGKRFANTWEIMKKAI
GGVGNAFAQNTTIGIVATNAILTKAQAKKVASMAHNAYAKTIRPVHTQYDGDTIYAMA
TGQIKSDVNIIGMLAIEAMEQAIVEGVKAGNERDMPQIIKKER"
misc_feature 114717..115613
/locus_tag="Amet_0097"
/note="nylC-like family; composed of proteins with
similarity to Flavobacterium endo-type
6-aminohexanoate-oligomer hydrolase (EIII), the product of
the nylon oligomer degradation gene, nylC. EIII is an
amide hydrolase that catalyzes the degradation of...;
Region: nylC_like; cd02252"
/db_xref="CDD:73148"
misc_feature order(115020..115028,115242..115244,115248..115250,
115389..115391,115506..115511)
/locus_tag="Amet_0097"
/note="putative active site pocket [active]"
/db_xref="CDD:73148"
misc_feature 115386..115391
/locus_tag="Amet_0097"
/note="cleavage site"
/db_xref="CDD:73148"
gene complement(115941..116507)
/locus_tag="Amet_0098"
/db_xref="GeneID:5310141"
CDS complement(115941..116507)
/locus_tag="Amet_0098"
/note="PFAM: Accessory gene regulator B;
KEGG: sao:SAOUHSC_02261 accessory gene regulator protein
B"
/codon_start=1
/transl_table=11
/product="accessory gene regulator B"
/protein_id="YP_001318000.1"
/db_xref="GI:150387951"
/db_xref="InterPro:IPR006741"
/db_xref="GeneID:5310141"
/translation="MHSLIDIFAYKIYKEKLLSHADIRKMKYAMTVIWNEIVKFIILL
IIFSVLDKRNLFLFSLCLLLPIRTFSGGLHFKSSFICFVTSLMFFLLSVVILPNLFTM
NINLTIIFITVSILIIYIYSPIPSSFRPILDKKRKRFLKYLSVFFTILSTFILFTFAL
TYNKAFFECGIWTICMQAFQLMLGKELK"
misc_feature complement(115965..116501)
/locus_tag="Amet_0098"
/note="Accessory gene regulator B; Region: AgrB;
pfam04647"
/db_xref="CDD:147012"
gene 116857..117228
/locus_tag="Amet_0099"
/db_xref="GeneID:5310142"
CDS 116857..117228
/locus_tag="Amet_0099"
/note="TIGRFAM: bacteriocin, lactococcin 972 family;
KEGG: dsy:DSY2024 hypothetical protein"
/codon_start=1
/transl_table=11
/product="bacteriocin"
/protein_id="YP_001318001.1"
/db_xref="GI:150387952"
/db_xref="InterPro:IPR006540"
/db_xref="GeneID:5310142"
/translation="MKNNLSRIFKKSVLGAVVISSLLTSQGVFASSNTPLAGGSVDLD
KISGQLITPFSVQEVGGGRWEYGVGSVNVYSYYQHMTKEHSATVKGLRERKDRQLAGT
EARATTAKNPLGGNRAWWNTY"
misc_feature 117031..117216
/locus_tag="Amet_0099"
/note="Bacteriocin (Lactococcin_972); Region:
Lactococcin_972; cl09891"
/db_xref="CDD:164162"
gene 117324..119636
/locus_tag="Amet_0100"
/db_xref="GeneID:5310143"
CDS 117324..119636
/locus_tag="Amet_0100"
/note="KEGG: cpe:PCP08 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318002.1"
/db_xref="GI:150387953"
/db_xref="GeneID:5310143"
/translation="MKRTYKTLLFVFFLLFTIVFTKYYGIYEHSRIFTGRYDFSINLR
IVEDISKEDVLSILEEYGERYDMDMERTIAFPGDGKYRRSLTAYVFINDFDWFNRTLR
IEDGKKLTSNLEEGEFLSNIETTDENQVGKFSIFDDNSQEIYIRPLADMKNRVVESNY
KVHLNNDKYTLEEIINTINQEQESLYVEKGSSIPIYVDINEYDIYFMYYIGITLLFIL
ILGIISFIYDIIGRNKNFGIKKLYGHSNFKIIFKIFKEDIFKVIIFSNISSILVITIL
LYFKNGFIGFGKYFSTYFLALCAIDLILMITLTTMTVFFKGRNNIQLMLKGKRRNIIF
LNANMKIIMSTIVILMLIVNLVIFNSYNIKNNNLNNWDKAKNLGFIGVNFSYTIDISD
NIQFYPYSVKLGNLWNDINDNGGIMAEYQQLFRSDIIEKEKMLSNLAYGMLINENYLK
ENIIFDENGNRITQIDDDKDTLTVLVPSQFKEKEELLKKGLRYFHLGNYDLGYKERLE
LETGTRKESRDLPEFIEYIEKEYSFLNQKIIYTKDNQKMFTYDTGEMELYRHDFKEYY
NEVDNTITDSILVVVSNDNLKETRKYAAIMSGTMKFRFEDYKYPEDGIVPLLEKNGLL
DALAEVTTVYDYAVDEINNTRTMLILSVGISIICIVIMLGLIFYESSNYLYRNKKKIG
VFKLYGLGFLKRYKSHFIMISIINLITIILSIIIGPIFLERFIDSSVKIYYLIIVLGI
LFYLLELIITYLFLNKRENKSILIVLKGEL"
misc_feature 119289..119627
/locus_tag="Amet_0100"
/note="Protein of unknown function (DUF1430); Region:
DUF1430; pfam07242"
/db_xref="CDD:148697"
gene 119636..120268
/locus_tag="Amet_0101"
/db_xref="GeneID:5310144"
CDS 119636..120268
/locus_tag="Amet_0101"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: ctc:CTC02098 transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001318003.1"
/db_xref="GI:150387954"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:5310144"
/translation="MSLVSLKNISKSFGKNKILEDFNLEIEKGESIAIVGDSGSGKST
LLNIIGMLDDCDSGELVIAGKKKLTSSSKDAEKLRRYEIGYIFQNFALIDNMTVSENL
DIALAYRKKSENKETIKANMLEEMGLRDKLNNKVYELSGGEQQRISISMVFLKPCSII
LADEPTGSLDDTNKEIIMNLLQRVHKDGKTIIIVTHDKDVSKICERIVKL"
misc_feature 119645..120265
/locus_tag="Amet_0101"
/note="This family is comprised of MJ0796 ATP-binding
cassette, macrolide-specific ABC-type efflux carrier
(MacAB), and proteins involved in cell division (FtsE),
and release of liporoteins from the cytoplasmic membrane
(LolCDE). They are clustered together...; Region:
ABC_MJ0796_Lo1CDE_FtsE; cd03255"
/db_xref="CDD:73014"
misc_feature 119651..120265
/locus_tag="Amet_0101"
/note="putative bacteriocin export ABC transporter,
lactococcin 972 group; Region: L_ocin_972_ABC; TIGR03608"
/db_xref="CDD:188353"
misc_feature 119741..119764
/locus_tag="Amet_0101"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73014"
misc_feature order(119750..119755,119759..119767,119897..119899,
120122..120127,120221..120223)
/locus_tag="Amet_0101"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73014"
misc_feature 119888..119899
/locus_tag="Amet_0101"
/note="Q-loop/lid; other site"
/db_xref="CDD:73014"
misc_feature 120050..120079
/locus_tag="Amet_0101"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73014"
misc_feature 120110..120127
/locus_tag="Amet_0101"
/note="Walker B; other site"
/db_xref="CDD:73014"
misc_feature 120134..120145
/locus_tag="Amet_0101"
/note="D-loop; other site"
/db_xref="CDD:73014"
misc_feature 120209..120229
/locus_tag="Amet_0101"
/note="H-loop/switch region; other site"
/db_xref="CDD:73014"
gene complement(120431..121693)
/locus_tag="Amet_0102"
/db_xref="GeneID:5310145"
CDS complement(120431..121693)
/locus_tag="Amet_0102"
/note="PFAM: ATP-binding region, ATPase domain protein;
KEGG: swo:Swol_2401 signal transduction histidine kinase
regulating citrate/malate metabolism"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase regulating
citrate/malate metabolism"
/protein_id="YP_001318004.1"
/db_xref="GI:150387955"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:5310145"
/translation="MQWYEIFILSILETVSILIVWSKLNRKVNVFSKKGAFIVIIISI
IAVLFFIYETDIGFAINFFILCTTIIFLFNVAIKETILQFFIVLSIMISIQLTFTYIL
YWVTESMVFSFNNGVVVNIGIIVVSALIYKFIIFDEIYKYLVRYRNYIIIIMINISGA
VLLLIYIWQINKEFITSYIAYLLLAVFIWEALNLYFLYQSIRIREQQKVIDIHEKYTP
FLKSMVQEVRQKQHDFKNHLNVLYGLIQIQDSGQVNMEIKEYIEKLIENIKSTDKLLN
IKDQVLSAIIYSKKVLADEKNICFDVEFISQIPVYPLEKYELVELFGNLLDNAIEAAE
TRKDEYPPKVVLILGIEGDFKVVEIKNTGGTLQNEEIGKIFHRGFSTKKGKHRGYGLY
NVKKIVSRHSGTIELSFDDDYTIFKIKF"
misc_feature complement(120434..120742)
/locus_tag="Amet_0102"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(120446..120448,120452..120457,
120470..120472,120473..120475,120521..120532,
120596..120601,120605..120607,120611..120613,
120617..120619,120701..120703,120710..120712,
120722..120724))
/locus_tag="Amet_0102"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(120710..120712)
/locus_tag="Amet_0102"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(120524..120526,120530..120532,
120599..120601,120605..120607))
/locus_tag="Amet_0102"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(121716..122486)
/locus_tag="Amet_0103"
/db_xref="GeneID:5310146"
CDS complement(121716..122486)
/locus_tag="Amet_0103"
/note="PFAM: response regulator receiver; LytTr
DNA-binding region;
KEGG: tte:TTE0561 response regulators of cell autolysis"
/codon_start=1
/transl_table=11
/product="LytTR family two component transcriptional
regulator"
/protein_id="YP_001318005.1"
/db_xref="GI:150387956"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR007492"
/db_xref="GeneID:5310146"
/translation="MKCLLSNVISGGGNLNILVVEDNEYEINNIARVLQSISKEFRIY
KALTGEECFKVIEKADIDLFILDIELPDISGVKIAEKIRNISKYELTYIIFITTHIYL
QLEAFKTIHCYDFLEKPYKKEELIKIIMRLSRGISSEKQQNKLDRQQVSFQMKDFIIK
VYIDEILFVEAQKRNCIIHTKEKVYTIKSMAIKKVIEILPKECFMRTHRSYIVNLKNI
HKIEKSEKNSWIIYFEGYFLPVYVSNSCKKEFLELFCG"
misc_feature complement(121725..122444)
/locus_tag="Amet_0103"
/note="Response regulator of the LytR/AlgR family
[Transcription / Signal transduction mechanisms]; Region:
LytT; COG3279"
/db_xref="CDD:33090"
misc_feature complement(122091..122435)
/locus_tag="Amet_0103"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(122130..122135,122142..122144,
122196..122198,122262..122264,122286..122288,
122421..122426))
/locus_tag="Amet_0103"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(122286..122288)
/locus_tag="Amet_0103"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(122262..122270,122274..122279))
/locus_tag="Amet_0103"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(122127..122135)
/locus_tag="Amet_0103"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(121728..122015)
/locus_tag="Amet_0103"
/note="LytTr DNA-binding domain; Region: LytTR;
smart00850"
/db_xref="CDD:197918"
gene complement(123522..123989)
/locus_tag="Amet_0104"
/db_xref="GeneID:5310147"
CDS complement(123522..123989)
/locus_tag="Amet_0104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318006.1"
/db_xref="GI:150387957"
/db_xref="GeneID:5310147"
/translation="MAKYYIGNPNRVSYRPIEQRPVHFSNHAVEYKQRDSSCRCNNVL
GIKVPIDYLVNILAVLGLYFFKTQNLNIDTFLSLLTINDNNVENLIKQFMNTLNPSSQ
EGKVDLNSIQSIINKVVSSMNPSNKNIDPSSIENMIKQVMGVVDNLDLESIKN"
gene 124354..124602
/locus_tag="Amet_0105"
/db_xref="GeneID:5310148"
CDS 124354..124602
/locus_tag="Amet_0105"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318007.1"
/db_xref="GI:150387958"
/db_xref="GeneID:5310148"
/translation="MEKQSNTNATTSKVCPQLPGTVLRVFIPAGAVINLLNLLEITSP
SGICIIVRLPILGAGGLNISSIVNTIQQAGGTIEFMSE"
gene 124879..125219
/locus_tag="Amet_0106"
/pseudo
/db_xref="GeneID:5310149"
gene complement(125266..126558)
/locus_tag="Amet_0107"
/db_xref="GeneID:5310150"
CDS complement(125266..126558)
/locus_tag="Amet_0107"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318008.1"
/db_xref="GI:150387959"
/db_xref="GeneID:5310150"
/translation="MNNLENLKDYVNENIENIKITEDIRSNIIKRSGKNTSNKLMYTA
MIVTPILLISCLFFNDQISYATQRGLRYLPGVSKLFYTDIEHQAYGLSGSIEMPIGEK
YIKVNSSYSEGNTVTIIIEGNIPFDQLIVMDEYKKAAESMSWDIIGDADFEQWSGRMT
CTFTDSIKRFYLVYDKYEIPIIMTELPEVFSKDRNYVSVEGIGIDIAVLTNYVEDKLE
VNLLAQTNNPAKTISFPLSDIYLLNDKGEKYYATNSNLENILYFDRKLEPGIRLVIPY
ISITDESLQSKVTISKDDEAPINITVGDNVLVINSLEWIQYVERFNFRTPQNDYHLVE
EVAQKVKLNFNKSLVGTNELKLHNILADVDENQLNKYIVEGVNVIYSDPSEENNSEMA
NDKELILSNIKEDQQEIDITFTRPVFYTSKEVIIPLQP"
gene complement(126551..127066)
/locus_tag="Amet_0108"
/db_xref="GeneID:5310151"
CDS complement(126551..127066)
/locus_tag="Amet_0108"
/note="TIGRFAM: RNA polymerase sigma-70;
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4
domain protein; Sigma-70, region 4 type 2;
KEGG: ctc:CTC00553 RNA polymerase sigma factor"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-24 factor"
/protein_id="YP_001318009.1"
/db_xref="GI:150387960"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR013249"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:5310151"
/translation="MSGEILNEQDFNRLINEYGTEILRLSYLYLKDYQLAEDACQDTF
LQVYKKFHNFKGDSSEKTWITRICINICKNYLRSSWIKSIVLNDKKLNDKAVSDKELF
NKLENNDLFKLIMDLKPKYKEIILMYYYQQFTVKEIAKILGISESNAFTRLSRARKDL
KDRKIGGMICE"
misc_feature complement(126578..127042)
/locus_tag="Amet_0108"
/note="RNA polymerase sigma factor, sigma-70 family;
Region: sigma70-ECF; TIGR02937"
/db_xref="CDD:211770"
misc_feature complement(126827..127027)
/locus_tag="Amet_0108"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(126584..126748)
/locus_tag="Amet_0108"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(126596..126598,126602..126607,
126611..126619,126623..126628,126632..126634,
126662..126667,126683..126685,126713..126715))
/locus_tag="Amet_0108"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(127234..127812)
/locus_tag="Amet_0109"
/db_xref="GeneID:5310152"
CDS complement(127234..127812)
/locus_tag="Amet_0109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318010.1"
/db_xref="GI:150387961"
/db_xref="GeneID:5310152"
/translation="MKKLLMLSLSFVLISSSMVVYASQGNEKSDSLVDSTAIIIKGEE
NIKAYEEAGIIRSVPRVRSKSFEIEGNQTSNSDFSIVSTSIPTSTWDLKVRSRDFTYS
FMSHIYSNYRYLPARDSLSSTGFGIYHMFEPNSRQRMTIFCYDVDGDYISGRTLTMDD
VTLYGLAVRNKAHYFKYESPGGTRISGSGLVY"
gene 128720..130687
/locus_tag="Amet_0110"
/db_xref="GeneID:5310153"
CDS 128720..130687
/locus_tag="Amet_0110"
/note="TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA
synthetase, beta subunit;
PFAM: t-RNA-binding domain protein; tRNA synthetase class
I (M);
KEGG: cth:Cthe_2096 methionyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA synthetase"
/protein_id="YP_001318011.1"
/db_xref="GI:150387962"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002304"
/db_xref="InterPro:IPR002547"
/db_xref="InterPro:IPR004495"
/db_xref="InterPro:IPR014758"
/db_xref="InterPro:IPR015413"
/db_xref="GeneID:5310153"
/translation="MSKGTYYLTTPIYYPSAKLHIGHTYTTVAADVLARFKRTRGYDV
QFLTGTDEHGEKIQEAAQKNGMNPKAYVDEIVEEIKKVWKSMDISYDIFIRTTDEEHE
RAVQKIFQTLYEKGDIYKSEYEGWYCTPCESFWTETQLKEDKGCPDCGRPAHLAKEEA
YFFKLSKYQDRLIEHFEKYPEICYPESRKNEMLNNFLRPGLEDLCVSRTTFDWGIPVP
FDPKHVIYVWFDAVCNYITALGYTSENEEQYKKYWPANVHLVAKEIVRFHTIIWPAIL
MALEVPLPKMVYGHGWILFGSDKMSKSKGNIVYPEPLIERYGIDALKYFLLREFTFGQ
DGNYTNRTFVTRLNADLANDLGNLVSRTVAMIEKYNSGIIPEPKVAGEFDEDLRTVAT
GAAAKVEKAIDQLQFHEALEEIWKVVRRTNKYIDETTPWILAKDEENKERLNTVLYHL
ADTLRIVSVLIQPFMEATTNKIWEQLGIDANQGTTWEDASLFNQIPSGVKVRKGESLF
PRLDVEKEVAELEEINAQYAKSMNSGQEDKKEEEVVLETKEQITIDDFDKVDLKVAKI
LAVEKHPKADRLLVLQLQVGNEKRQVVSGIAEHYTAEALIGKQVILVANLKPVKLRGI
ESHGMILAAVTGEKLVLGTIDGEIEAGTTIS"
misc_feature 128720..130684
/locus_tag="Amet_0110"
/note="methionyl-tRNA synthetase; Reviewed; Region:
PRK12267"
/db_xref="CDD:183389"
misc_feature 128732..129733
/locus_tag="Amet_0110"
/note="catalytic core domain of methioninyl-tRNA
synthetases; Region: MetRS_core; cd00814"
/db_xref="CDD:173907"
misc_feature order(128750..128755,128759..128761,128870..128872,
129401..129403,129410..129415,129422..129424,
129509..129511,129521..129523)
/locus_tag="Amet_0110"
/note="active site"
/db_xref="CDD:173907"
misc_feature 128777..128788
/locus_tag="Amet_0110"
/note="HIGH motif; other site"
/db_xref="CDD:173907"
misc_feature 129614..129628
/locus_tag="Amet_0110"
/note="KMSKS motif; other site"
/db_xref="CDD:173907"
misc_feature 129794..130147
/locus_tag="Amet_0110"
/note="Anticodon-binding domain of methionyl tRNA
synthetases; Region: Anticodon_Ia_Met; cd07957"
/db_xref="CDD:153411"
misc_feature order(129794..129799,129806..129811,129818..129823,
129830..129835,129983..129988,129992..129997,
130010..130012)
/locus_tag="Amet_0110"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153411"
misc_feature order(129794..129799,129806..129811,129818..129823,
129830..129835,129992..129994,130010..130012)
/locus_tag="Amet_0110"
/note="anticodon binding site; other site"
/db_xref="CDD:153411"
misc_feature 130370..130684
/locus_tag="Amet_0110"
/note="tRNA-binding-domain-containing Escherichia coli
methionyl-tRNA synthetase (EcMetRS)-like proteins. This
family includes EcMetRS and Aquifex aeolicus Trbp111
(AaTrbp111). This domain has general tRNA binding
properties. MetRS aminoacylates methionine...; Region:
tRNA_bind_EcMetRS_like; cd02800"
/db_xref="CDD:48402"
misc_feature order(130373..130375,130514..130516,130562..130570,
130577..130579,130613..130624,130640..130642,
130646..130648,130652..130654,130661..130663,
130673..130684)
/locus_tag="Amet_0110"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48402"
misc_feature order(130448..130450,130484..130486,130562..130564,
130574..130576,130595..130597,130604..130606)
/locus_tag="Amet_0110"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:48402"
gene 130702..131469
/locus_tag="Amet_0111"
/db_xref="GeneID:5310154"
CDS 130702..131469
/locus_tag="Amet_0111"
/note="TIGRFAM: hydrolase, TatD family;
PFAM: TatD-related deoxyribonuclease;
KEGG: cth:Cthe_2095 hydrolase, TatD family"
/codon_start=1
/transl_table=11
/product="TatD family hydrolase"
/protein_id="YP_001318012.1"
/db_xref="GI:150387963"
/db_xref="InterPro:IPR001130"
/db_xref="GeneID:5310154"
/translation="MLFDSHAHIDGGRFDQDRHQMIENAKTNGVSYILNPGADLSTSV
KAVNLAEKYDCVYAAVGVHPHDVKDMDEDTIEILRSLTNNKNVKAIGEIGLDFHYDHS
PRDVQRKWFKKQVELAKELQLPMIIHDRDAHGEVFEILKEHNAGEFGCVMHCYSGSIE
LAQEYIKLGIYISLAGPVTFNNAKKTYEVAQGIPLEWLLVETDSPYLTPVPYRGKRNE
PAYVKHVADKIAEAKGISFEEVARQTTKNAKRLFGIK"
misc_feature 130705..131460
/locus_tag="Amet_0111"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(130717..130719,130723..130725,131083..131085,
131158..131160,131308..131310)
/locus_tag="Amet_0111"
/note="active site"
/db_xref="CDD:30053"
gene 131658..131774
/locus_tag="Amet_0112"
/pseudo
/db_xref="GeneID:5310155"
gene 131924..132112
/locus_tag="Amet_0113"
/db_xref="GeneID:5310156"
CDS 131924..132112
/locus_tag="Amet_0113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318013.1"
/db_xref="GI:150387964"
/db_xref="GeneID:5310156"
/translation="MSIKKMQILIFIGALIHITLSLLKFNNPLEKYKTESEIGIFLLV
VYLIIIFFAYKTKTKVKS"
gene 132215..132970
/locus_tag="Amet_0114"
/db_xref="GeneID:5310157"
CDS 132215..132970
/locus_tag="Amet_0114"
/note="PFAM: protein of unknown function DUF1568;
KEGG: tte:TTE2528 predicted transposase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318014.1"
/db_xref="GI:150387965"
/db_xref="InterPro:IPR011462"
/db_xref="GeneID:5310157"
/translation="MPRTAREKSKSGIYHVMIRGANRQEIFHDEQDCLRFLEILDRYK
VKTEIKIYGWCLMNNHMHLLIQEGKEELATTMKRIGVSFVGYYHQKYDTTGHLFQDRF
RSENVENDEYLITVIRYIHQNPVKAGLVSKPVDWKWSSCSGYYGKKEYLQGLLDSERI
LGLFSNDRESAIKEFRKFNEQENKDNCLDDVIITSLRDEEARLEIEKILSGINIGQIK
SLPKDQRDKIIREAKCIEGVKQRQLARLLGVSQ"
misc_feature 132215..132631
/locus_tag="Amet_0114"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG1943"
/db_xref="CDD:32126"
gene 133051..133362
/locus_tag="Amet_0115"
/db_xref="GeneID:5310158"
CDS 133051..133362
/locus_tag="Amet_0115"
/note="KEGG: swo:Swol_2283 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318015.1"
/db_xref="GI:150387966"
/db_xref="GeneID:5310158"
/translation="MKSSENKEKWQLHINSQLSSGQTQIQWCEEQGVKIHSFRYWKNR
LQIKPEQAKESTGFVAIKPVTLQKVSKMRIRIGKATVEIDDDVDPILLTSVIRVLTDY
V"
gene 133473..133754
/locus_tag="Amet_0116"
/db_xref="GeneID:5310159"
CDS 133473..133754
/locus_tag="Amet_0116"
/note="PFAM: IS66 Orf2 family protein;
KEGG: swo:Swol_2282 IS66 Orf2 like"
/codon_start=1
/transl_table=11
/product="IS66 Orf2 family protein"
/protein_id="YP_001318016.1"
/db_xref="GI:150387967"
/db_xref="InterPro:IPR008878"
/db_xref="GeneID:5310159"
/translation="MSLIVQEKFKLDPFSRSLFVFCNKKRDKIKVLEWDTTGFWLHYK
RLEKDVFQWPEVTDNTHVEVDERAFRWLLDGLSIRERHAHKTIEERQII"
misc_feature 133476..133733
/locus_tag="Amet_0116"
/note="IS66 Orf2 like protein; Region: TnpB_IS66;
pfam05717"
/db_xref="CDD:191353"
gene 133833..135434
/locus_tag="Amet_0117"
/db_xref="GeneID:5310160"
CDS 133833..135434
/locus_tag="Amet_0117"
/note="PFAM: transposase IS66;
KEGG: swo:Swol_2281 transposase and inactivated
derivatives-like protein"
/codon_start=1
/transl_table=11
/product="transposase IS66"
/protein_id="YP_001318017.1"
/db_xref="GI:150387968"
/db_xref="InterPro:IPR004291"
/db_xref="GeneID:5310160"
/translation="MKTIENSTHSITSTTEDRLAFFENELAQKEQKIEELEAKVKFYE
EQFRLSQAQKYGSSSEKTDPDQMSIFNEAEKFSVKLDEEPEAEEVLTKRRTGKSKSKK
KYEDLPIEEVHYTLSDEERQCPKCDHTLHEMKTEVRKELKIIPAQVKVVHHIKQVYAC
RGCDAIDSDNGGTIITAPMPKPVLPGSMVSPSVLAFIMENKYNQALPLYRQEASFVNY
GIDLSRQNMASWIIQGAEKWLSPLYDRMHTHLKQSPVIHADESPLKVLDEKDKSQSYM
WLYATAETSEYPIYLYEYQPSRAKKHPKQFLEGFTGFLQTDGYAGYNGVENVVQVGCL
AHARRKYTDAIKALPEGSDVSLTKANEGLSLLRKIYRLEKSFKEMEPEVRYEARIEQT
QPVLDAYKTWLEVEEKRTLPKSKLGQAISYSLKQWDKLAAFMKDGRIAIDNNLAERGI
KPFVLGRKNYLFAKSPKGATASALCYSIIETAKANKLIPFQYLTYLFEQLPNLDIEDP
EALDAMLPWAESLPNEVRHKTEKND"
misc_feature 133962..134168
/locus_tag="Amet_0117"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:205188"
misc_feature 134178..134372
/locus_tag="Amet_0117"
/note="putative Helix-turn-helix domain of transposase
IS66; Region: HTH_Tnp_IS66; pfam13005"
/db_xref="CDD:205186"
misc_feature 134388..135245
/locus_tag="Amet_0117"
/note="Transposase IS66 family; Region: DDE_Tnp_IS66;
pfam03050"
/db_xref="CDD:202516"
misc_feature 135261..135386
/locus_tag="Amet_0117"
/note="IS66 C-terminal element; Region: DDE_Tnp_IS66_C;
pfam13817"
/db_xref="CDD:205990"
gene 135705..137579
/locus_tag="Amet_0118"
/db_xref="GeneID:5310161"
CDS 135705..137579
/locus_tag="Amet_0118"
/note="PFAM: transposase, IS4 family protein;
KEGG: tte:TTE2604 transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_001318018.1"
/db_xref="GI:150387969"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:5310161"
/translation="MEGLCMYISKSKRPNGKYFISIAKGIRDPETKKSKKIQIKGFGT
HDLDSKSGKKALVQAEAELKEMIRLDEASRGFENFEDFIVSMSKDKLSLKHKNIGYLP
YLEIFNQLELQSFFSKMVKDSKLDYSFSDMMFYQVLGRLFNPSSKLEVATRKDDFLYD
FNFVNNDNIYSSLDVFSGFNKHKSKALQDGIQVINDMEILLDTVDSEAKKILETNINN
TSHELEELITSYDSNFEMNENKLFKHLNKHMEKIVPERNISLAFYDCTTYYFESFDED
GFRERGMSKDNKRNETQVVMGLLIDTNGIPISYRLFKGNKHELHTMEEVIDDILNNYT
IKEIIIVADRGLNSRANLEMIRGKGLNYIVGSKGSAVPKDLKEKKFNSSWNITSKAEA
KYKSGYITSKRKVSHNDETYDELIIKKYSDVYKEREMFKQDKMLERAKKNIKDFTINS
TTKSKSKYYKAVDNPKEKINIEIDEEKIKQEQENFGYFYIVTNKVEMNPADIMVAYKS
LYKIEESFRILKTNLKARPVYHFKERRIRSHFLICYLALVIQRVLEYKLEEKNVEIST
HEIINGLEGFVIDEIDYKVDKLYMISDKLFKSKINQDIFKIEKNVLLSNEISNIIKKM
"
misc_feature <136476..137384
/locus_tag="Amet_0118"
/note="Transposase [DNA replication, recombination, and
repair]; Region: COG5421"
/db_xref="CDD:34980"
gene 137650..138087
/locus_tag="Amet_0119"
/db_xref="GeneID:5310162"
CDS 137650..138087
/locus_tag="Amet_0119"
/note="KEGG: swo:Swol_2192 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318019.1"
/db_xref="GI:150387970"
/db_xref="GeneID:5310162"
/translation="MMFRSQVLWYQTLLDLTMCVGFYAYEQIMRRIAGSYVYWYNWKY
DRIGNLFQDRFKSEPVEDNTYFLTVLRYSHQNPIKAGVTKDIKNYKWSSYKEYLEGKG
LTDREYVLEFFHKDPSIALGELVKYSDTLNEDKCLEIDENQKS"
gene 138150..138269
/locus_tag="Amet_0120"
/pseudo
/db_xref="GeneID:5310163"
gene complement(138305..138898)
/locus_tag="Amet_0121"
/db_xref="GeneID:5310164"
CDS complement(138305..138898)
/locus_tag="Amet_0121"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318020.1"
/db_xref="GI:150387971"
/db_xref="GeneID:5310164"
/translation="MITILDIEIIKQNKFTILSIVIFVSALSKNIKLLIESPNEYMIW
ITILILFLLISKICLPFINNKKLFYKSILIVSLSIIYLIIGAMFIRYNAEHIDYEMNK
EQKAGTKVRYTFYMTGRMNSPISVIKVIPIGAKGLEKHEINSRYTRDIRDSSIATTMT
FVISEENIKLPTRTIVIYRALGVIPMINIRTNELAGM"
gene complement(139281..140108)
/locus_tag="Amet_0122"
/db_xref="GeneID:5310165"
CDS complement(139281..140108)
/locus_tag="Amet_0122"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318021.1"
/db_xref="GI:150387972"
/db_xref="GeneID:5310165"
/translation="MKRIMSLIIILGILLSISTVGAASTSQYPIKELKQNNIDEYNLL
YQHYKEANNQALKYILENKTMEGLSDFRTSEYEMYIREHTNNKSDFSVKSADSIELIN
IIDGLIIDDTYSTIYIYSDSSFIIESMKFTDTFNDKILEATLLDISMNSADRSKTYVI
ENFSIPTRSPIRTETSYTINLGLTGFQLNTFVDVKDSNTVDLAYHNTNGTYNLDPYVS
IEASSRELDENNLSNMCFTEGMYTTKDLLWEKDHFIQKAVVLEYDKLLVTSYFYFDR"
gene complement(140128..140961)
/locus_tag="Amet_0123"
/db_xref="GeneID:5310166"
CDS complement(140128..140961)
/locus_tag="Amet_0123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318022.1"
/db_xref="GI:150387973"
/db_xref="GeneID:5310166"
/translation="MKKTPVLIMMLVTLFSILTIGSVSAIQDSTKEISQDVVYDYNLL
QEHYERSNNKALEYILENKTIEGINTFRTSEYDLYVQGVKNNEIHINGVTTDSIELVE
VIDDIFIDSAYSTIYIYSDSSFIIESMKFIDTSNDKIIEATVADISVNSADSSYTYVV
EDFDIPNRTPIRAEAWYTVNLGLVKFQLNTFIDVEDVSTVNVAYHNTNGSYSASPTLD
LVEQSSRELNDNNLSNVCFTEGLYTLRGGFNSLSDSYIQKAIVLENSRLLVTSYLYFD
Q"
gene complement(141199..141819)
/locus_tag="Amet_0124"
/db_xref="GeneID:5310167"
CDS complement(141199..141819)
/locus_tag="Amet_0124"
/note="PFAM: Accessory gene regulator B;
KEGG: cth:Cthe_1310 accessory gene regulator B"
/codon_start=1
/transl_table=11
/product="accessory gene regulator B"
/protein_id="YP_001318023.1"
/db_xref="GI:150387974"
/db_xref="InterPro:IPR006741"
/db_xref="GeneID:5310167"
/translation="MKMINKLATYTVNKMNETITIDKEKIDFYIYGTELFIITLIKGI
GLILIASILGLLTEALIFILAFSILRIQAGGIHANSFWKCFLLTDMITFTAIYLVYLI
PSNSMLTFQAFFSFFSILLVLYYAPVESPNKPLTSHEKRIYKDRSCFIVLIGIVITLT
ISWISPYHSMYGLIFSLGFFCEGITLVPAFQRRLYKLKIRKWRCLD"
misc_feature complement(141235..141804)
/locus_tag="Amet_0124"
/note="Accessory gene regulator B; Region: AgrB;
pfam04647"
/db_xref="CDD:147012"
gene complement(141939..142367)
/locus_tag="Amet_0125"
/pseudo
/db_xref="GeneID:5310168"
gene 142451..142660
/locus_tag="Amet_0126"
/db_xref="GeneID:5310169"
CDS 142451..142660
/locus_tag="Amet_0126"
/note="KEGG: swo:Swol_2198 transposase"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001318024.1"
/db_xref="GI:150387975"
/db_xref="GeneID:5310169"
/translation="MPRTAREKNKSGIYHVMIRGANRQEIFHDEQDCLRFLEILEIYK
VKTEIKIYDCCLMNNQANNRDGSFD"
gene 142710..143483
/locus_tag="Amet_0127"
/db_xref="GeneID:5310170"
CDS 142710..143483
/locus_tag="Amet_0127"
/note="PFAM: protein of unknown function DUF1568;
KEGG: tte:TTE2528 predicted transposase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318025.1"
/db_xref="GI:150387976"
/db_xref="InterPro:IPR011462"
/db_xref="GeneID:5310170"
/translation="MPRTAREKSKSGIYHVMIRGANRQEIFHDEQDCLRFLEILDRYK
VKTEIKIYGWCLMNNHMHLLIQEGKEELATTMKRIGVSFVGYYHQKYDTTGHLFQDRF
RSENVESDEYLITVIRYIHQNPVKAGLVSKPVDWKWSSCSGYYGKKEYLQGLLDSERI
LGLFSNDRESAIKEFRKFNEQENKDNCLDDVIITSLRDEEARLEIEKILSGINIAQIK
SLPKDQRDKIIREAKCIEGVKQRQLARLLGVSQTMISIA"
misc_feature 142710..143126
/locus_tag="Amet_0127"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG1943"
/db_xref="CDD:32126"
gene 143592..144113
/locus_tag="Amet_0128"
/db_xref="GeneID:5310171"
CDS 143592..144113
/locus_tag="Amet_0128"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318026.1"
/db_xref="GI:150387977"
/db_xref="InterPro:IPR000008"
/db_xref="GeneID:5310171"
/translation="MYKRIILIIAALFIFAACGEKLQYSVPSLEQVNEFISDNSVNAL
AIKEAEDFTIVLYENENGFGHYVLHRDQNNKLYDGKVIAMRHKDYQQNTLSLGGVASG
KNPFVTVIINDDNVLDKATELEILFTDGVKVKEPIDNKGIIIIHTNNESDKIINYLKV
TIYDSDMNILYEK"
gene 144336..144704
/locus_tag="Amet_0129"
/db_xref="GeneID:5310172"
CDS 144336..144704
/locus_tag="Amet_0129"
/note="PFAM: regulatory protein, ArsR;
KEGG: cth:Cthe_0245 transcriptional regulator, ArsR
family"
/codon_start=1
/transl_table=11
/product="regulatory protein ArsR"
/protein_id="YP_001318027.1"
/db_xref="GI:150387978"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:5310172"
/translation="MEKERITMDTCNCTIIHEDIVNRVKESMPQEEKLYDLAELFKVF
GDTTRIKIIYALFESEMCVCDIAALLGMNQSAISHQLRVLKQAGLAKYRREGKVVYYS
LDDEHVKNIFDQGYTHIAHK"
misc_feature 144456..144674
/locus_tag="Amet_0129"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(144456..144461,144465..144467,144474..144476,
144483..144488,144495..144500,144507..144509,
144597..144599,144654..144659,144663..144671)
/locus_tag="Amet_0129"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature order(144459..144464,144474..144482,144519..144527,
144552..144563,144567..144572,144579..144584,
144588..144593,144609..144617,144630..144638)
/locus_tag="Amet_0129"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(144519..144521,144528..144530,144654..144656)
/locus_tag="Amet_0129"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene 144718..147084
/locus_tag="Amet_0130"
/db_xref="GeneID:5310173"
CDS 144718..147084
/locus_tag="Amet_0130"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC; cadmium-translocating P-type
ATPase; heavy metal translocating P-type ATPase;
PFAM: Haloacid dehalogenase domain protein hydrolase;
Heavy metal transport/detoxification protein; E1-E2
ATPase-associated domain protein;
KEGG: dsy:DSY0829 hypothetical protein"
/codon_start=1
/transl_table=11
/product="heavy metal translocating P-type ATPase"
/protein_id="YP_001318028.1"
/db_xref="GI:150387979"
/db_xref="InterPro:IPR001366"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006121"
/db_xref="InterPro:IPR006404"
/db_xref="InterPro:IPR006416"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:5310173"
/translation="MSYVSHVIKKELILEGMDCAGCTSKIEVAIAKLVGVKEVSLNFV
TKTLTIEIDDESKMESVVSAAKDIVNQFEPHVIVKEKMIDKVSKKALVLKGLSCVSCA
TKIEDKVKELKGVHSVYMDFTSEKLVIEAKTHDWHRITKEVTAIVKHIESDVEVIDES
RKKDEQGHSHGGGDNKMELIRLGIGAILYAIALAFQMSDSIEFVLYFISYLLIGGEVL
LKAGRNIRRGQIFDENFLMSIATIGAFAIGEFPEGVAVMLFYQIGEFFQGLAVNRSRK
SIGALMDIRPDYANLKVGNDVKKVSPEEVTVGDHILVKPGEKVPLDGVVIEGQSMVDT
SALTGESVPREVEVDSNVLGGFINKNGVLTIKVSKEFGESTVSKILELVENASSKKAP
TENFITKFARYYTPVVVFVALALAIIPPLVIDGATFSEWIYRALVFLVISCPCALVIS
IPLGFFGGIGGASKNGILIKGGNYLEALNSVDIVVFDKTGTLTKGVFKVMEINVEQNI
SKEELLEYAAYAESYSNHPISTSILKAYGKEVNKEEIESYNEISGHGIKIKVKDKEIL
AGNIKLMDSEKIAYEPVEAIGTIVYVAINGKLAGSIIISDEIKEDSQRAIKELKAIGV
KKIVMLTGDNKQVGIKVAKQLGIDEVHTELLPDEKVEKLEQLDRQKSPKGKLVFVGDG
INDAPVLARADIGVAMGGLGSDAAIEAADVVLMTDEPMKLVSAIKIAKRTKRIVWQNI
IFAFGVKGIVLLLGAGGLATMWEAVFADVGVALIAVFNAMRVLNVKNL"
misc_feature 144748..144918
/locus_tag="Amet_0130"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(144766..144774,144781..144783)
/locus_tag="Amet_0130"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 144979..147069
/locus_tag="Amet_0130"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature 144988..145173
/locus_tag="Amet_0130"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(145003..145011,145018..145020)
/locus_tag="Amet_0130"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 145480..146148
/locus_tag="Amet_0130"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature <146557..146784
/locus_tag="Amet_0130"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
gene 147192..148448
/gene="uvsE"
/locus_tag="Amet_0131"
/db_xref="GeneID:5310174"
CDS 147192..148448
/gene="uvsE"
/locus_tag="Amet_0131"
/note="PFAM: UV-endonuclease UvdE; Protein of unknown
function DUF1722;
KEGG: cno:NT01CX_0232 UV DNA damage endonuclease
(UV-endonuclease) UvdE"
/codon_start=1
/transl_table=11
/product="putative UV damage endonuclease"
/protein_id="YP_001318029.1"
/db_xref="GI:150387980"
/db_xref="InterPro:IPR004601"
/db_xref="InterPro:IPR013560"
/db_xref="GeneID:5310174"
/translation="MSIGYACLTVGVENTDQKSCMLKNASESRLSEIVAYNLSALENI
IDYNIKNQIKLFRISSDLIPFGSSPMNTLHWWDVYRSDFSKIGEKIKKSGMRVSMHPG
QYTVLNSPREEVVERAIQDLNYHARVLDCLGVGPEHKIVLHIGGIYDDKKEAMDRFIR
NYQSLEEAVKKRLVIENDDKSYTISDVLEIGAILNIPVIFDNLHNEINPSDQERDELY
WIGACRKTWEEKDGNQKIHYSQQNPEKRAGSHSESIGINEFMVFYQKIKRDDLDMMLE
VKDKNLSAVKCINSTSTQKKIKALELEWSKYKYTILETSPVNYLEIRKILKDKDGYPA
ISFYTLVEEALQKERTIENAVNAAQHVWGYFKDVASEKEKQAFLKNMDKFIKKETSIR
SIKRNLWKLAVKYKEEYLLSSYYFVL"
misc_feature 147192..148103
/gene="uvsE"
/locus_tag="Amet_0131"
/note="putative UV damage endonuclease; Provisional;
Region: uvsE; PRK02308"
/db_xref="CDD:179412"
misc_feature 148113..148439
/gene="uvsE"
/locus_tag="Amet_0131"
/note="Protein of unknown function (DUF1722); Region:
DUF1722; cl01284"
/db_xref="CDD:186414"
gene 148749..149123
/locus_tag="Amet_0132"
/db_xref="GeneID:5310175"
CDS 148749..149123
/locus_tag="Amet_0132"
/note="PFAM: regulatory protein GntR, HTH;
KEGG: swo:Swol_1621 transcriptional regulator, GntR
family"
/codon_start=1
/transl_table=11
/product="regulatory protein GntR"
/protein_id="YP_001318030.1"
/db_xref="GI:150387981"
/db_xref="InterPro:IPR000524"
/db_xref="GeneID:5310175"
/translation="MEFNNSKPIYLQIIDYIKKQLIRGELKGGDKISSQREFAQQMKV
NPNTVQRAYREMESMQLVETIRGQGTFICNQEEMLAVIQEEMAGDLLRHFIEEMYSLG
YSKEAMVQLIEKWKTEVREEEK"
misc_feature 148749..149090
/locus_tag="Amet_0132"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1725"
/db_xref="CDD:31911"
misc_feature 148770..148967
/locus_tag="Amet_0132"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(148770..148772,148776..148778,148845..148847,
148851..148856,148878..148892,148896..148901,
148908..148910,148938..148943,148947..148958)
/locus_tag="Amet_0132"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
gene 149120..149821
/locus_tag="Amet_0133"
/db_xref="GeneID:5310176"
CDS 149120..149821
/locus_tag="Amet_0133"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: mta:Moth_1174 ABC transporter related"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001318031.1"
/db_xref="GI:150387982"
/db_xref="InterPro:IPR001827"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:5310176"
/translation="MIEFKGVTKKFGSTIAVDNVTMTFPKGKIIGLLGPNGSGKSTTL
KMIASLNKPDQGEITIDGKSPSKETRETLAYLPEIDYLYPWMTIEGAGKFMKSFYDDW
NEEKFQSLMKFLNLEPQMIIKKISKGMRAKAKLLLVFSRNAKLVLLDEPLSGIDIFTR
DQIIDTIIQDYCEGEQTIILSTHEIHEVESLLDYVVFMHQGTILRQGEAEDLRSEENK
SLVELMKEVYRNENI"
misc_feature 149120..149785
/locus_tag="Amet_0133"
/note="ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism]; Region: NatA; COG4555"
/db_xref="CDD:34199"
misc_feature 149123..149728
/locus_tag="Amet_0133"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature 149219..149242
/locus_tag="Amet_0133"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature order(149228..149233,149237..149245,149351..149353,
149564..149569,149666..149668)
/locus_tag="Amet_0133"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature 149342..149353
/locus_tag="Amet_0133"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature order(149465..149467,149495..149521)
/locus_tag="Amet_0133"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature 149552..149569
/locus_tag="Amet_0133"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature 149576..149587
/locus_tag="Amet_0133"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature 149654..149674
/locus_tag="Amet_0133"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
gene 149808..150611
/locus_tag="Amet_0134"
/db_xref="GeneID:5310177"
CDS 149808..150611
/locus_tag="Amet_0134"
/note="KEGG: mta:Moth_1173 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318032.1"
/db_xref="GI:150387983"
/db_xref="GeneID:5310177"
/translation="MKTSRVGMIYSLYKKELVAAKNELLMIMTFILGANAFLFYKHQT
GWPVEASFIFSLFLLLFVVATTFFRAFSVVRNEWKENTVYLVMSLPITGVDVFLSKLL
ALLTQLIGLSIIALIGASLFIPIIPEVSYVLEQIQMEFTSVRLIWNALKIGLLGILGM
NQAIIFAFFSAVVGKLFKKFSGLITLITFIGISMINSKFIDWIGNFFIDQGMGERIES
QLMGLDVTMMTAMETMLNVYTLLFTIITVVTSAGVFFATAALYDRKVEL"
gene complement(150790..151818)
/locus_tag="Amet_0135"
/db_xref="GeneID:5310178"
CDS complement(150790..151818)
/locus_tag="Amet_0135"
/note="PFAM: SCP-like extracellular protein;
KEGG: cth:Cthe_0779 copper amine oxidase-like protein"
/codon_start=1
/transl_table=11
/product="SCP-like extracellular protein"
/protein_id="YP_001318033.1"
/db_xref="GI:150387984"
/db_xref="InterPro:IPR014044"
/db_xref="GeneID:5310178"
/translation="MKFFLFLLCIVILSFGFLQFFDLPIEFSLDFIVEPQATPSEEPS
FPHAPGPEEIELAAPGEDFAFSYRGISLGTSLDKVHSILGAPHSILPSEYPFQWYIFH
EDYQQYVQVGIANGHVVALYSNDAQWQNPWAFDFNTLSTTVESVLGNSLDRIQKDNII
YLLPEDRHYLLFEVERFYLTVFFDIHNNNQVTSFLLIDQEIENKYHAPLDPDIALAEA
YKEQVFYLTNAIRVRHDLPLLTWHEGAAVTALGHSKDMAVQNFFDHRNPQGEDPFDRM
AAQGIMYRRAGENIAAGQQNSIFAHEGWMNSLGHRQAILGDFNSLGVGVHLGGPLDAY
YTQNFLSQ"
misc_feature complement(150802..>151188)
/locus_tag="Amet_0135"
/note="Uncharacterized protein with SCP/PR1 domains
[Function unknown]; Region: COG2340"
/db_xref="CDD:32490"
misc_feature complement(150802..151158)
/locus_tag="Amet_0135"
/note="SCP_bacterial: SCP-like extracellular protein
domain, as found in bacteria and archaea. The wider family
of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, and allergen 5...;
Region: SCP_bacterial; cd05379"
/db_xref="CDD:88558"
gene 152247..153278
/locus_tag="Amet_0136"
/db_xref="GeneID:5310179"
CDS 152247..153278
/locus_tag="Amet_0136"
/note="PFAM: protein of unknown function DUF348; 3D domain
protein; G5 domain protein;
KEGG: tte:TTE0112 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318034.1"
/db_xref="GI:150387985"
/db_xref="InterPro:IPR007137"
/db_xref="InterPro:IPR010611"
/db_xref="InterPro:IPR011098"
/db_xref="GeneID:5310179"
/translation="MESHQSSKRLLNSKVIIAAIVGSLLLILVGTISLHKTVVVAIEG
QEIQVSTLASTVEGVLRKEGIEIGEADRTVPELNQRVKDGERIVIHRAYEIQLIESGN
TQSIITAVETVKSLLQSLNIELQDMDIVEPPLGVSIGEGDTVKITRVTEELTAETQEI
PYQTVIKHNNEMDYGKMNQLQEGKPGLQEVKIAIRYEDGEEVERSIIEEYVTTEAVNE
IMERGTANLIATSRGNSRYTKALTMTATAYDAGYESTGKRPGDQYYGVTRSGTQVRPG
VVAVDPNVIPLGTKLYIESTDGTGNYGYASAEDTGGAIKGNKIDLYYESRSEALRFGR
RTVKVYVLE"
misc_feature 152355..152483
/locus_tag="Amet_0136"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 152526..152651
/locus_tag="Amet_0136"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 152688..152921
/locus_tag="Amet_0136"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:203655"
misc_feature 152919..153269
/locus_tag="Amet_0136"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3584"
/db_xref="CDD:33384"
gene 153455..154009
/locus_tag="Amet_0137"
/db_xref="GeneID:5310180"
CDS 153455..154009
/locus_tag="Amet_0137"
/note="TIGRFAM: primase/topoisomerase like protein;
PFAM: TOPRIM domain protein;
SMART: Toprim sub domain protein;
KEGG: ctc:CTC00246 DNA primase"
/codon_start=1
/transl_table=11
/product="primase/topoisomerase-like protein"
/protein_id="YP_001318035.1"
/db_xref="GI:150387986"
/db_xref="InterPro:IPR004466"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
/db_xref="GeneID:5310180"
/translation="MIKEIIVVEGKDDVSAIKKAVEAETIITGGFSLPERVMKQIETA
AKRRGVIIFTDPDFAGDKIRKRIANRVPGCKHAFLPKEEAMKDGDIGIENATPKSICA
ALAKARSESMEKREVFTRVDLIGNGLMGDNQASYRRDEIGKTLGIGYGNAKQFLNRLN
HYGVTREEYIEALKNLDEVGMKNG"
misc_feature 153458..153976
/locus_tag="Amet_0137"
/note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334"
/db_xref="CDD:161823"
misc_feature 153458..153691
/locus_tag="Amet_0137"
/note="TOPRIM_ RNase M5_like: The topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain found in
Ribonuclease M5: (RNase M5) and other small primase-like
proteins from bacteria and archaea. RNase M5 catalyzes
the maturation of 5S rRNA in low...; Region:
TOPRIM_RNase_M5_like; cd01027"
/db_xref="CDD:173777"
misc_feature order(153479..153484,153491..153493,153617..153619,
153623..153625,153629..153631)
/locus_tag="Amet_0137"
/note="putative active site [active]"
/db_xref="CDD:173777"
misc_feature order(153479..153481,153617..153619)
/locus_tag="Amet_0137"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:173777"
misc_feature 153719..153976
/locus_tag="Amet_0137"
/note="Domain of unknown function (DUF4093); Region:
DUF4093; pfam13331"
/db_xref="CDD:205511"
gene 154002..154865
/gene="ksgA"
/locus_tag="Amet_0138"
/db_xref="GeneID:5310181"
CDS 154002..154865
/gene="ksgA"
/locus_tag="Amet_0138"
/note="catalyzes the transfer of a total of four methyl
groups from S-adenosyl-l-methionine (S-AdoMet) to two
adjacent adenosine bases A1518 and A1519 in 16S rRNA;
mutations in ksgA causes resistance to the translation
initiation inhibitor kasugamycin"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="YP_001318036.1"
/db_xref="GI:150387987"
/db_xref="InterPro:IPR001737"
/db_xref="InterPro:IPR011530"
/db_xref="GeneID:5310181"
/translation="MDKIVSPSKTKAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGAD
IQPDDCVIEIGPGIGTLTQFIAEKAHKVVAIEIDRNLIPILKHTLADYQNVEVINQDV
LKVDLHQLIADKFEGKPVKVIANLPYYVTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM
QAGPGTKDYGALSIAVQYYCNPEILLKVPPSVFIPQPKVESIVIKLQVYPEPKVKVER
DDLMFALVKDAFGKRRKTLLNALSSGLLQLSKEIVRESLEAANIDENRRGETLTIEEY
ATLTKEVAARQ"
misc_feature 154152..154424
/gene="ksgA"
/locus_tag="Amet_0138"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(154161..154181,154227..154232,154299..154307,
154374..154376)
/gene="ksgA"
/locus_tag="Amet_0138"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 154949..156295
/locus_tag="Amet_0139"
/db_xref="GeneID:5310182"
CDS 154949..156295
/locus_tag="Amet_0139"
/note="KEGG: ctc:CTC00249 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318037.1"
/db_xref="GI:150387988"
/db_xref="GeneID:5310182"
/translation="MSRRYKRYFVMLEGEDRGFELSKSQEPKGYGKIEVRNEQGTLSL
HCQNLKKVDPIGARYRWYLVNTRKTGEPIIVDIGPMEVDVNGKGELVWEFNGENVKGS
NSKIDGFNILALVVEEKGEKKEFSAPLVGYIDKEKTGWKDYLAKHLSVPAKKSFEPIK
ESKRDSPKKDVALDPKEKPKPTLESKKEETKKLKPTLEPKEKPLDLKEKPLKKVPEKT
PEKTPEKAQEKPTPTLESKDPKEKGQSPQENPVKDQGPRAPQVKQETPKIKVEKKEAE
AVPHPKLKEEKEENIEAQKKNIESQNKGLQVYVESTLKGFPKADPFTKRFDDYQWWQI
QYDQQTMYRSAMPFIGYIEGQHHPYYYYYPSEYQRLIYTYQHYLFGMSYDGDQGVKYY
VYGIPGSKLPKDQPYRGSTGFTNWYSCNGDHTNPNTSGYWLLHIDAKTGEIATALK"
gene 156612..157619
/locus_tag="Amet_0140"
/db_xref="GeneID:5310183"
CDS 156612..157619
/locus_tag="Amet_0140"
/note="PFAM: sodium/calcium exchanger membrane region;
KEGG: rfr:Rfer_1133 sodium/calcium exchanger membrane
protein"
/codon_start=1
/transl_table=11
/product="sodium/calcium exchanger membrane protein"
/protein_id="YP_001318038.1"
/db_xref="GI:150387989"
/db_xref="InterPro:IPR004837"
/db_xref="GeneID:5310183"
/translation="MFNTYALFLFSAVLVIISGMKLSKYGDVIANNTSLGHGIVGGVL
IAAATSLPELVTSVSASLMGAPDIAIGNVYGSNIFNLMILAVADILHGQGRFLQTVKM
NHILAGLFGVLLSALGALSILINQIGGLDLEIGWVSINSLIIFITYSLGSILIIRYEN
KLSRMTPPKEIEEVAEVQDTSIKHAIIGFGLAAAIIIWAGMTLAQAGDQIAMVTGLGH
TFVGTLLIAGTTSLPELVATIAAIKIGAHDMAVGNVFGSNIFNMIIITVADLAYSPGS
IFSDINIDHTITAMAGIVLSAIALIGLFYRTQRTILNIGWDSVFILVVYLTTVYLILI
T"
misc_feature 156624..157544
/locus_tag="Amet_0140"
/note="Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism]; Region: ECM27; COG0530"
/db_xref="CDD:30876"
misc_feature 156648..>156863
/locus_tag="Amet_0140"
/note="Sodium/calcium exchanger protein; Region: Na_Ca_ex;
pfam01699"
/db_xref="CDD:190072"
misc_feature 157218..157532
/locus_tag="Amet_0140"
/note="Sodium/calcium exchanger protein; Region: Na_Ca_ex;
pfam01699"
/db_xref="CDD:190072"
gene complement(157638..158084)
/locus_tag="Amet_0141"
/db_xref="GeneID:5310184"
CDS complement(157638..158084)
/locus_tag="Amet_0141"
/note="PFAM: Rhodanese domain protein;
KEGG: chy:CHY_0566 rhodanese-like domain protein"
/codon_start=1
/transl_table=11
/product="rhodanese domain-containing protein"
/protein_id="YP_001318039.1"
/db_xref="GI:150387990"
/db_xref="InterPro:IPR001763"
/db_xref="GeneID:5310184"
/translation="MRIFLIKKRNLYIAVGVIIALIIGAIFFTAVTRDRTVSSQHLKY
AYRNLLPEEANDLITNNPHVLILDVRSPEDYTQGHLHNALSVPYKELKGQLDEFAQEN
TYLVYSQSGKESTKAAKLLSESGFPRVFTLVGGYHKWPYGITKVSQ"
misc_feature complement(157665..157928)
/locus_tag="Amet_0141"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature complement(157761..157763)
/locus_tag="Amet_0141"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene complement(158251..158700)
/locus_tag="Amet_0142"
/db_xref="GeneID:5310185"
CDS complement(158251..158700)
/locus_tag="Amet_0142"
/note="KEGG: mta:Moth_1874 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318040.1"
/db_xref="GI:150387991"
/db_xref="GeneID:5310185"
/translation="MKGWTFYLSVFLIGFLMGLGIMNLFQMHTLDRLYRTQNQLTSQL
LDQELKLERLNENLKSQQVFVVKDLSIVVDFDGNPLVQDEIENNIRFYLSDLVGRELS
RIDGEMIYKIVQDRILHIGERQILLEMKYIIIEEKIQIGVKATVLDK"
gene complement(158697..159026)
/locus_tag="Amet_0143"
/db_xref="GeneID:5310186"
CDS complement(158697..159026)
/locus_tag="Amet_0143"
/note="KEGG: cth:Cthe_0065 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318041.1"
/db_xref="GI:150387992"
/db_xref="GeneID:5310186"
/translation="MLVFSQNMVYNFFIALGVMLGACLFGGVAATLNGHPPLKTMLDL
GDKIKIWAAVVALGGTFPSLKIIEIGIFNGEFRGLIKQMLYIVSALVGAHVAYKLMVY
LEGSGRL"
misc_feature complement(158706..159008)
/locus_tag="Amet_0143"
/note="Sporulation protein YtrH; Region: Spore_YtrH;
pfam14034"
/db_xref="CDD:206204"
gene 159128..159556
/locus_tag="Amet_0144"
/db_xref="GeneID:5310187"
CDS 159128..159556
/locus_tag="Amet_0144"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318042.1"
/db_xref="GI:150387993"
/db_xref="GeneID:5310187"
/translation="MALLHKMYRKKGGISMPYHYDDYCGMPPQHMDLYEDRRRLMAMY
PDSYHRLYPRVQEICGRMDIPSNPRMYPYVDPTLLDEMVEEIYRQEISEVQSEQFTRG
PFRDLITILLIQQLLGRRGRRAPIRPPVRPPYRPPYGPWY"
gene complement(159718..160185)
/locus_tag="Amet_0145"
/db_xref="GeneID:5310188"
CDS complement(159718..160185)
/locus_tag="Amet_0145"
/note="KEGG: cac:CAC0449 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318043.1"
/db_xref="GI:150387994"
/db_xref="InterPro:IPR001226"
/db_xref="GeneID:5310188"
/translation="MYIIYYGTGTALTTSVAASIHLSDLTNPEAFQKELVRKINEFWL
LEQQSLGHLYYLGTDSLSHDVFLMNVAQSETIVLPGFKSVFEILQLRSTQYLLVDTTS
FVTVYNLLGFNLYKRNLFRKLGHRCLLKGIEKNLSKIFLLVENTKKQLENKDG"
misc_feature complement(159739..160182)
/locus_tag="Amet_0145"
/note="Protein of unknown function (DUF3189); Region:
DUF3189; pfam11385"
/db_xref="CDD:151825"
gene 160620..162173
/locus_tag="Amet_0146"
/db_xref="GeneID:5310189"
CDS 160620..162173
/locus_tag="Amet_0146"
/note="PFAM: C4-dicarboxylate anaerobic carrier; AbgT
putative transporter; short chain fatty acid transporter;
KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport
protein"
/codon_start=1
/transl_table=11
/product="AbgT transporter"
/protein_id="YP_001318044.1"
/db_xref="GI:150387995"
/db_xref="InterPro:IPR001589"
/db_xref="InterPro:IPR004669"
/db_xref="InterPro:IPR004697"
/db_xref="InterPro:IPR006160"
/db_xref="GeneID:5310189"
/translation="MSAKIQSSNKKGLFTKFLDVIEVVGNKLPHPVTLFAIFSLAVVI
ISAMAAAAGTTVDFDRVDMATGETELTTVVAISLLTAEGIRRIFSEAVTNFTGFAPLG
TVLVAMLGVGVAEGTGLVQAALRKLVLATPKKLITAVVIFAGIMSNVASDAGYVVLVP
LGALIFLSFGRHPLAGLAAAFAGVSGGFSANLIVGTIDPLLGGISQQAAQMYSPGYTV
DPTANWYFMIVSTFVITIIGTIITEKIVEPRLGAYTGGEKASIEKVSDHETKGLKWAG
ISLLGLLLVMLALTLPANAVLRSDSGSLMSGSAFMAGLVPIIALFFLVPGIAYGMAAG
TVKSDKDIAGFMGKAMSTMGGYLVLAFVASQFVAYFNWSNLGTILAVKGADVLQATGM
TGIPMLIGFILVSGFINLFIGSASAKWAIMAPIFVPMLMRLGYSPEFTQIAYRIGDST
TNIISPLMSYFAVIIAFAQKYDKKTGIGTLISTMIPYSLVFLAAWIILFVAWFALGLP
LGPGAYIRL"
misc_feature 160665..162170
/locus_tag="Amet_0146"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
misc_feature 160665..162158
/locus_tag="Amet_0146"
/note="p-Aminobenzoyl-glutamate transporter family;
Region: ydaH; TIGR00819"
/db_xref="CDD:188086"
gene 162673..164226
/locus_tag="Amet_0147"
/db_xref="GeneID:5310190"
CDS 162673..164226
/locus_tag="Amet_0147"
/note="PFAM: C4-dicarboxylate anaerobic carrier; AbgT
putative transporter;
KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport
protein"
/codon_start=1
/transl_table=11
/product="putative transporter AbgT"
/protein_id="YP_001318045.1"
/db_xref="GI:150387996"
/db_xref="InterPro:IPR001589"
/db_xref="InterPro:IPR004669"
/db_xref="InterPro:IPR004697"
/db_xref="GeneID:5310190"
/translation="MSVKTQDVKKGGLFNKFLDVVERVGNKLPHPVTLFVIFSLAVII
ISALAAGSEVSVNFDRINMETGETEASTVAAVSLLTVEGIRRIFSEAVTNFTGFAPLG
TVLVAMLGVGVAEGTGLVQAALRKLVLSTPKRLITAVVVFAGIMSNVASDAGYVVLVP
LGALIFLSFGRHPLAGLAAAFAGVSGGFSANLMISTLDPLLGGLSQAAAQMYQPGYTV
DPTANWFFMIASTFIITLVGTVVTERIVEPRLGAYEGESDGAIQGIGTHEAKGLKWAG
FSLLGFFLIMLALTLPSNAVLRSDAGTLLSGSAFMGGLVPIIAMAFLIPGVFYGIASG
TVKNDKDVAGFMGKAMSSMGGYLVLAFVASQFVAYFGWSNLGTILAVKGADVLEATGM
TGIPMLIGFILVAGFINLFIGSASAKWAIMAPVFVPMLMRVGYTPEFTQLAYRIGDST
TNIITPLMSYFAVIIAFAQKYDKKTGIGTLISTMIPYSLMFLAAWIILFVIWFAFGLP
LGPGAYIRM"
misc_feature 162718..164220
/locus_tag="Amet_0147"
/note="AbgT putative transporter family; Region:
ABG_transport; pfam03806"
/db_xref="CDD:112611"
misc_feature 162718..164211
/locus_tag="Amet_0147"
/note="p-Aminobenzoyl-glutamate transporter family;
Region: ydaH; TIGR00819"
/db_xref="CDD:188086"
gene 164401..165516
/locus_tag="Amet_0148"
/db_xref="GeneID:5310191"
CDS 164401..165516
/locus_tag="Amet_0148"
/note="TIGRFAM: peptidase T-like protein;
PFAM: peptidase M20; peptidase M42 family protein;
peptidase dimerisation domain protein;
KEGG: cpe:CPE2463 probable peptidase"
/codon_start=1
/transl_table=11
/product="peptidase T-like protein"
/protein_id="YP_001318046.1"
/db_xref="GI:150387997"
/db_xref="InterPro:IPR002933"
/db_xref="InterPro:IPR008007"
/db_xref="InterPro:IPR010162"
/db_xref="InterPro:IPR011650"
/db_xref="GeneID:5310191"
/translation="MVNQDRLVNEFLELIQIDSLSSKEGQVAKVLIQKLKDLGLEVTV
DNAGEKIGGETGNVIARKKGTKSGKTILFSCHMDTVTPGEGIKPIIKEGVIYSDGTTI
LGGDNKAGIAAVLEGLRIIKENNIEHGDIEVVFSIWEEGGLFGAKNLDYSLLKADYGF
VLDSGGSPGEIIITGPAQDKVNATIKGKSAHAGVAPEEGVSAIMIAARAINNMNLLRI
DEETTANVGVISGGTATNIVTPEVQVKAESRSINEAKLDAQTKHMMEVFQKAAEELGG
SVELDIERMYPPFNIGEDEEIVIKVKEVFTALGIESYTKATGGGSDTNILNGNGIKSV
NLGIGEKKPHTLEEHLHIVDLVNSARMVSQIIQTFAN"
misc_feature 164407..165504
/locus_tag="Amet_0148"
/note="M20 Peptidase T like enzymes specifically cleave
tripeptides; Region: M20_peptT_like; cd05683"
/db_xref="CDD:193558"
misc_feature 164416..165501
/locus_tag="Amet_0148"
/note="peptidase T-like protein; Region: PepT-like;
TIGR01883"
/db_xref="CDD:162579"
misc_feature order(164626..164628,164716..164718,164815..164820,
164887..164889,165430..165432)
/locus_tag="Amet_0148"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193558"
misc_feature order(164644..164646,164971..164979,164986..164991,
164995..164997,165001..165003,165007..165012,
165019..165021,165028..165030,165040..165054,
165067..165069,165073..165096,165115..165117,
165352..165354,165430..165432)
/locus_tag="Amet_0148"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193558"
gene 165739..167214
/locus_tag="Amet_0149"
/db_xref="GeneID:5310192"
CDS 165739..167214
/locus_tag="Amet_0149"
/note="PFAM: Orn/Lys/Arg decarboxylase, major region;
Orn/Lys/Arg decarboxylase domain protein;
KEGG: cth:Cthe_1918 Orn/Lys/Arg decarboxylase, major
region"
/codon_start=1
/transl_table=11
/product="Orn/Lys/Arg decarboxylase, major region"
/protein_id="YP_001318047.1"
/db_xref="GI:150387998"
/db_xref="InterPro:IPR000310"
/db_xref="InterPro:IPR008286"
/db_xref="GeneID:5310192"
/translation="MSYYLNQNQTPLFTALKEHSQKKVIPFDVPGHKQGRGLKEFTDF
VGTTVMELDVNSMKSVDNICNPIGVIKEAKELAAYAFGSDHAYFLVNGTTSGVQAMIM
SACEPGDKIILPRNAHKSAIAGLILAGALPIYIQPEIDENLGIAMGVSVESVVNIIGR
HPDAKAIFLINPTYYGATSDIKEIIHIARRNGIAVLVDEAHGAHLNFHEGFPMSAMEL
GADMSAVSTHKTGGSLTQSSILLLKEGAIDPYTVKKNLNLMQTTSGSYLLMASIDVAR
KQLATEGEEIFTRVLKLVRNARAQINKVDGLYAFGTELVGNPGVYDFDESKLGVNVRK
LGLTGFEVYDILIDEYNIQVELADYYNILAIVSVGDEEEQVTALVEALKDIAEKHRRP
EEIKVISNVLKNPDAIVSPRDAYYSSKKVVNIEDAEGEISGESIMAYPPGIPIVSPGE
RITKDMIDHIKLLKEEETLIQGTEDPYAEQVRVLGQGNGKG"
misc_feature 165751..167166
/locus_tag="Amet_0149"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:32165"
misc_feature 165769..166647
/locus_tag="Amet_0149"
/note="Ornithine decarboxylase family. This family belongs
to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine...; Region:
Orn_deC_like; cd00615"
/db_xref="CDD:99739"
misc_feature order(165895..165897,165907..165909,165931..165933,
166006..166014,166018..166023,166030..166032,
166042..166050,166054..166059,166090..166095,
166420..166425,166432..166446,166498..166503,
166507..166515,166519..166521,166540..166542,
166549..166551,166558..166560,166594..166599)
/locus_tag="Amet_0149"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99739"
misc_feature order(166012..166020,166090..166092,166096..166098,
166246..166248,166330..166332,166336..166341,
166414..166416,166420..166425)
/locus_tag="Amet_0149"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99739"
misc_feature 166423..166425
/locus_tag="Amet_0149"
/note="catalytic residue [active]"
/db_xref="CDD:99739"
misc_feature <166951..167160
/locus_tag="Amet_0149"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene 167466..167788
/locus_tag="Amet_0150"
/pseudo
/db_xref="GeneID:5310193"
gene 167814..168044
/locus_tag="Amet_0151"
/pseudo
/db_xref="GeneID:5310194"
gene 168266..169228
/locus_tag="Amet_0152"
/db_xref="GeneID:5310195"
CDS 168266..169228
/locus_tag="Amet_0152"
/note="TIGRFAM: cell envelope-related function
transcriptional attenuator, LytR/CpsA family;
PFAM: cell envelope-related transcriptional attenuator;
KEGG: tte:TTE0026 transcriptional regulator"
/codon_start=1
/transl_table=11
/product="cell envelope-related transcriptional
attenuator"
/protein_id="YP_001318048.1"
/db_xref="GI:150387999"
/db_xref="InterPro:IPR004474"
/db_xref="GeneID:5310195"
/translation="MKVFLKVFAISFIIFVLVFSVGVMAFNTLMKEDSADFDEVVARV
EEDDHYDKDVEEIDELLRLVQESNRINFIVLGLDDTRSDMMMFVSFDPDEKRMDGISI
PRDTYYPRQGYTGPGKKKINAAHGDHGANGVKTVVTDILFDVPVDYYITMTYQGVGAI
VNSLGGVPVHISKPMIYDDPYDNPPLHINFAAGNHVLKGPDAVKFLRYRQPNPGSGAL
DRHGDIGRIDAQQEFIQSAISKAMGPRLPSVAGQAFRHVRTDIDLQDVMRLATAAVGM
DMANVQIATLPGEASYQGGVSYYFHDPEATRDRLMEIYKGSTEE"
misc_feature 168275..169225
/locus_tag="Amet_0152"
/note="Transcriptional regulator [Transcription]; Region:
LytR; COG1316"
/db_xref="CDD:31507"
gene complement(169403..170785)
/gene="murC"
/locus_tag="Amet_0153"
/db_xref="GeneID:5310196"
CDS complement(169403..170785)
/gene="murC"
/locus_tag="Amet_0153"
/EC_number="6.3.2.8"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_001318049.1"
/db_xref="GI:150388000"
/db_xref="InterPro:IPR000713"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR005758"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:5310196"
/translation="MIAFNMDEHQLKHIHLIGIGGISMSAIAEILLENGYHISGSDMK
ESNLTHKLRDHGAEIFIGHASENIQNPDLVVYTAAVKADNPERIRAEELGIPLADRAE
MLGQIMKKYEKAIAVAGSHGKTTTTSLISLLMEYSNLDPTILVGGELDEIGGNIKIGQ
SQHFITEACEYVESFLKFYPFIGIILNIDEDHLDYFKDIEHIKSAFKKFAQRIPKEGF
LIASYDDAHVREISRDLDCHVITYGIKTKSQFMAHNIEFSFEGLPSFDVSFEGKTIGS
FSLNIPGLHNVYNSLAAIATTYVLGVDPVAISKHITRFKGIHRRFDLLGEVKGAKVID
DYAHHPVEIRATLEAAKKYPHKKIWCVFQPHTYSRTQALLKDFAKSFYLADHVIITDI
YAAREKDEGIVNSQGLVNLIVQEHPAQYIGGFEEISRYLYDHIEAGDIVLTMGAGDVY
LIAQMLLAEK"
misc_feature complement(169409..170773)
/gene="murC"
/locus_tag="Amet_0153"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:179018"
misc_feature complement(170453..170749)
/gene="murC"
/locus_tag="Amet_0153"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature complement(169925..170431)
/gene="murC"
/locus_tag="Amet_0153"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature complement(169577..169837)
/gene="murC"
/locus_tag="Amet_0153"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 171020..171841
/locus_tag="Amet_0154"
/db_xref="GeneID:5310197"
CDS 171020..171841
/locus_tag="Amet_0154"
/note="TIGRFAM: pur operon repressor;
PFAM: phosphoribosyltransferase; purine repressor-like;
KEGG: tte:TTE2574 purine operon repressor"
/codon_start=1
/transl_table=11
/product="pur operon repressor"
/protein_id="YP_001318050.1"
/db_xref="GI:150388001"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR010078"
/db_xref="InterPro:IPR015265"
/db_xref="GeneID:5310197"
/translation="MTKLKRNERIAAMVKILGDHPNHIFTLNYFTEKFNAAKSTISED
IVVVKGAMEKMDLGKIKTISGAAGGVKYIPITGAKKSQQILQNICEKMNSSHRILPGG
FLYMTDIIYHPQTIHNLGELFATQFNYENVDAIITVETKGIPLALMVAKAMNLPLVIL
RRDNKVTEGSTVSINYISGSSDKISRMSLSRRALKPGARVIIIDDFMKAGGTAKGMID
MMKEFEVEVEGIGVLIATKEPRKKLVDEYVPLLILEDIGESQGKIDVVPNPIIIE"
misc_feature 171026..171835
/locus_tag="Amet_0154"
/note="pur operon repressor; Provisional; Region:
PRK09213"
/db_xref="CDD:181702"
misc_feature 171032..171241
/locus_tag="Amet_0154"
/note="Bacterial purine repressor, N-terminal; Region:
PuR_N; pfam09182"
/db_xref="CDD:150015"
misc_feature 171374..171748
/locus_tag="Amet_0154"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(171434..171436,171440..171442,171629..171637,
171641..171655,171725..171727)
/locus_tag="Amet_0154"
/note="active site"
/db_xref="CDD:206754"
gene 171978..172274
/locus_tag="Amet_0155"
/db_xref="GeneID:5310198"
CDS 171978..172274
/locus_tag="Amet_0155"
/note="stage V sporulation protein G; essential for spore
formation and a negative regulator of asymmetric septation
in Bacillus; involved in methicillin-resistance, biofilm
formation and capsular polysaccharide synthesis in
Staphylococcus"
/codon_start=1
/transl_table=11
/product="regulatory protein SpoVG"
/protein_id="YP_001318051.1"
/db_xref="GI:150388002"
/db_xref="InterPro:IPR007170"
/db_xref="GeneID:5310198"
/translation="MKVTDVRIRKVAAEGKMKAIVSVTFDEEFVVHDIKIIEGQNGLF
IAMPSRKMGEGDFRDIAHPINSDTRSKIQDAIFAEYAIMNEEVQVQVQVTEEAL"
misc_feature 171978..172229
/locus_tag="Amet_0155"
/note="regulatory protein SpoVG; Reviewed; Region:
PRK13259"
/db_xref="CDD:183925"
gene 172516..173886
/gene="glmU"
/locus_tag="Amet_0156"
/db_xref="GeneID:5310199"
CDS 172516..173886
/gene="glmU"
/locus_tag="Amet_0156"
/note="forms a homotrimer; catalyzes the acetylation of
glucosamine-1-phosphate and uridylation of
N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc;
function in cell wall synthesis"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="YP_001318052.1"
/db_xref="GI:150388003"
/db_xref="InterPro:IPR001228"
/db_xref="InterPro:IPR001451"
/db_xref="InterPro:IPR005835"
/db_xref="InterPro:IPR005882"
/db_xref="GeneID:5310199"
/translation="MKLKAIILAAGTGTRMKSKMPKVLHKVCGQTMLGHVIDVSKDSK
AEECIVVVGHGAEEVQKTLPEGVKTVLQAEQLGTGHAVMVAEEHIETQGTVLVLYGDG
PLITEETLNALMTYHQEGKYSATVLTAELENPTGYGRIIRDDDDRLKTIVEEKDTTVG
EKEVREINSGIYCFDSKVLKETLPKIQNNNSQKEYYLTDALTIIKQEGLKVGVYQIEN
YEDIMAVNSREQLAEVEEVMQRRIVKKHMEAGVTFIDPQSTYIEKTVKVGMDTILHPG
VILKGATEIGEDCIIGHNSRIENSILKNGIEVQSSTIIESTIDDHATIGPYAYLRPQS
HIGKHVKVGDFVEVKNATIDDHSKAAHLAYIGDAEIGKHVNIGCGVIFVNYDGIKKHK
TIIKDHAFVGSNSNLVAPITIQESAFVASGSTITREVPAGALAVGRSRQENKEGWVAR
KGVGKK"
misc_feature 172516..173883
/gene="glmU"
/locus_tag="Amet_0156"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14354"
/db_xref="CDD:184643"
misc_feature 172528..173208
/gene="glmU"
/locus_tag="Amet_0156"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(172537..172545,172666..172668,172747..172749,
172756..172758,172810..172812,172816..172818)
/gene="glmU"
/locus_tag="Amet_0156"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(172816..172818,173191..173193)
/gene="glmU"
/locus_tag="Amet_0156"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 173263..173838
/gene="glmU"
/locus_tag="Amet_0156"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(173506..173508,173554..173556,173560..173562,
173596..173598,173605..173607,173638..173649,
173662..173670,173683..173685,173713..173715,
173719..173724,173773..173778,173827..173829)
/gene="glmU"
/locus_tag="Amet_0156"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(173506..173508,173554..173556,173560..173562,
173596..173598,173605..173607,173638..173646,
173665..173667,173683..173685)
/gene="glmU"
/locus_tag="Amet_0156"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(173647..173649,173662..173664,173668..173670,
173719..173724,173773..173778,173827..173829)
/gene="glmU"
/locus_tag="Amet_0156"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 173936..174883
/locus_tag="Amet_0157"
/db_xref="GeneID:5310200"
CDS 173936..174883
/locus_tag="Amet_0157"
/EC_number="2.7.6.1"
/note="TIGRFAM: ribose-phosphate pyrophosphokinase;
PFAM: phosphoribosyltransferase;
KEGG: cno:NT01CX_1015 ribose-phosphate pyrophosphokinase"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="YP_001318053.1"
/db_xref="GI:150388004"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR000842"
/db_xref="InterPro:IPR002375"
/db_xref="InterPro:IPR005946"
/db_xref="GeneID:5310200"
/translation="MNTSGSGIKIFCGNSNTELASKIAEILGGEIGEAEVSTFSDGEI
SVNILETVRGADVFVVQSTNPPVNDNLMELLIMIDAFKRASAGRITAVLPYYGYARQD
RKAKARDPITAKLVADILTTAGADRVLTMDLHAAQIQGYFNIPVDHLLGVPILAKYFK
EKNLKDVVVVSPDLGSVTRARNLANHLDAPIAIIDKRRPKANVAEIMNIIGEIEGKNV
ILIDDMIDTAGTITQGANALKEFGAKDVYACCTHPVLSGPAMERIENSVIKELIITDT
IPLPPEKHSDKIKIMTVAPVFAEAIRRIYNNVSVSKLFD"
misc_feature 173957..174880
/locus_tag="Amet_0157"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature 173957..174307
/locus_tag="Amet_0157"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature 174389..174763
/locus_tag="Amet_0157"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(174452..174454,174458..174460,174599..174607,
174611..174625,174695..174697)
/locus_tag="Amet_0157"
/note="active site"
/db_xref="CDD:206754"
gene 174900..175457
/locus_tag="Amet_0158"
/db_xref="GeneID:5310201"
CDS 174900..175457
/locus_tag="Amet_0158"
/EC_number="3.1.1.29"
/note="Enables the recycling of peptidyl-tRNAs produced at
termination of translation"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_001318054.1"
/db_xref="GI:150388005"
/db_xref="InterPro:IPR001328"
/db_xref="GeneID:5310201"
/translation="MYIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKA
LYGEARIGGEKVILAKPQTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRI
RQSGSAGTHNGMKSTIYQLQTDAFPRIRIGVGRPEFGDLSNYVLGSFTKDEIPLMKES
LERATLTVESIVIDGIDKAMNRYNG"
misc_feature 174906..175415
/locus_tag="Amet_0158"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature order(174924..174926,174954..174956,175089..175094,
175170..175172,175230..175232)
/locus_tag="Amet_0158"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature 174954..174956
/locus_tag="Amet_0158"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene 175575..175955
/locus_tag="Amet_0159"
/db_xref="GeneID:5310202"
CDS 175575..175955
/locus_tag="Amet_0159"
/note="KEGG: tte:TTE2566 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318055.1"
/db_xref="GI:150388006"
/db_xref="GeneID:5310202"
/translation="MGIIAGIIAALLAYLLNKWALKGVGERGLIALVPFIEEAAKSGV
AFLLKTSFIQAHFVFGCVEGVYDMMTSSKKIGKWAALASILSHSFFGGITYFVYTQTQ
ALLLSIMAAWIFHSGWNWYITKYL"
gene 176043..179567
/locus_tag="Amet_0160"
/db_xref="GeneID:5310203"
CDS 176043..179567
/locus_tag="Amet_0160"
/note="TIGRFAM: transcription-repair coupling factor;
PFAM: helicase domain protein; transcription factor CarD;
TRCF domain protein; DEAD/DEAH box helicase domain
protein;
SMART: DEAD-like helicases-like;
KEGG: tte:TTE2565 Transcription-repair coupling factor -
superfamily II helicase"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="YP_001318056.1"
/db_xref="GI:150388007"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003711"
/db_xref="InterPro:IPR004576"
/db_xref="InterPro:IPR005118"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:5310203"
/translation="MDKKMLLSPLRQSLEYHQLLDRVNLEKTPVAIHGLNDSQKGHMS
YGLFDDSNEQVCILTYSEVEARKIEQDLKFYIGDRGLFFPSREVIFYDLKAQTDHAQQ
ERMETLQKIATGEKHVVVASIESLLLKLIPPALYKKDQISFKVGESIDLEKVTETFVK
QGYERVEQVEGNGQFSIRGGIIDIYSGGEISPYRIELFDDEVDSIRQFQVDTQRSTQK
VQELLIYPVAETIIEPSAVESVIQAIEAEGAALSKKLKGGPKERLAEKVAEVSNKFRE
FGHFNGVEQYAPYLYEQEASLLDYLNPNALVIIDEPQRCKERVRGYEGEFKENFKTLL
ERGEVLPTQGNLLLAYDKLVKSVLERRVITLSLLPKNTPDFPPKEIINFMARPVQSFH
GKINLLIDELKSLQYKGYKIVLLPGTKERALRLLELLRERGIPVEFVVSHKEEIVSGQ
IFIMQGSINRGFEYSSMKYMTITDYEIYGVHKRKKKERRRKDAVSIKSFVDLQVGDHV
VHEGHGIGKYIGIEELSVEGIKKDYIKIRYSGEDHLYVPTDQMNLIQKYIGSDKGSPK
LNKLGGVEWVKTKGKVKKAIEDMAEELLKLYAERRRNKGHAFGNDGEWQKQFEDLFPY
EETPDQLKSIEEVKADMEQEGAMDRLLCGDVGYGKTEVAIRAGFKAVMDSKQVAFLVP
TTILAQQHFNNFKQRFSGFPVTVEMLSRFKTPAQQKQVLEGVRTGNVDVLIGTHRLLS
KDIEFKDLGLLIVDEEQRFGVKHKERMKQMKESIDVLTLTATPIPRTLHMSMVGIRDM
SVIEDPPEERFPVQTYVIPYNESMIIDAITKEMARGGQTYYVYNRVDGIHQVARKLQE
LIPEARVAVGHGQMGERELEMLMMDYLDGVYDVLVCTTIIETGLDISNVNTIMIHDAD
KLGLSQLYQLRGRVGRSSQQGYAYLMYQRDKILSEVAEKRLKAIKEFTEFGSGFKIAM
RDLEIRGAGNLLGSQQHGHMASIGYDLYIKLLEETMAEMKGEVVEKYEDTNMELNVNA
YIPERFIGSSTHKIEIYKKIASIRNQEDLYAIEEEIEDRFGDIPMSVRNLLMISYIKA
LGNQIRVQTITQKEKEIRIQFTRSQKLKPENIGSVLHQYPRKVSFHGSDQPYLIYQIR
TADQYKLLTEIKEVIEKISGFHNEADSV"
misc_feature 176112..179540
/locus_tag="Amet_0160"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 177543..177836
/locus_tag="Amet_0160"
/note="CarD-like/TRCF domain; Region: CarD_CdnL_TRCF;
pfam02559"
/db_xref="CDD:202283"
misc_feature 177981..178391
/locus_tag="Amet_0160"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 178008..178022
/locus_tag="Amet_0160"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 178302..178313
/locus_tag="Amet_0160"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 178470..178862
/locus_tag="Amet_0160"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(178566..178577,178641..178646,178719..178727)
/locus_tag="Amet_0160"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(178743..178745,178809..178811,178821..178823,
178830..178832)
/locus_tag="Amet_0160"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 179115..179402
/locus_tag="Amet_0160"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 179607..180566
/locus_tag="Amet_0161"
/db_xref="GeneID:5310204"
CDS 179607..180566
/locus_tag="Amet_0161"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase;
KEGG: tte:TTE2564 parvulin-like peptidyl-prolyl isomerase"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_001318057.1"
/db_xref="GI:150388008"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:5310204"
/translation="MKKIKNKSIGLLTALLAIMLLITACSTPAQLSQDAAAEVNGATV
SMEEFDKTLALFKLSYEMQYGYNEDIFQQDIGGMTLLENIKEGIMEKLISDVLIAEKA
VESGLTVSEEEITEAYEPYRVYEESDENFSAFLKENEIDETFIREQVKKDILLFKYRD
FYNENLEMTEEAARKFFDENPEMFSTQEASARHILVADLALADELVVRLESGEDFATL
AQEYSTDPGSAVQGGDLGFFPRGVMVPEFEEASFTQPIGEVGAPVQTQHGYHIILVED
RVDNSYDFDEMKESIMGYLKNLEFEKHLEELVGNAEVQKRESL"
misc_feature 179679..>179957
/locus_tag="Amet_0161"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:208773"
misc_feature 179685..180557
/locus_tag="Amet_0161"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:178832"
misc_feature <180237..180434
/locus_tag="Amet_0161"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
gene 180682..181233
/locus_tag="Amet_0162"
/db_xref="GeneID:5310205"
CDS 180682..181233
/locus_tag="Amet_0162"
/note="TIGRFAM: transcriptional regulator, AbrB family;
Sporulation stage V, protein T;
PFAM: SpoVT/AbrB domain protein;
KEGG: mta:Moth_0083 transcriptional regulator, AbrB
family"
/codon_start=1
/transl_table=11
/product="AbrB family transcriptional regulator"
/protein_id="YP_001318058.1"
/db_xref="GI:150388009"
/db_xref="InterPro:IPR006339"
/db_xref="InterPro:IPR007159"
/db_xref="InterPro:IPR014213"
/db_xref="GeneID:5310205"
/translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDREGEV
ILKKYSPIGELSEFATEYAESLHEALGHIAMVTDRDTVVSVAGGSKKEYLEKRVSKSL
EKAMEEREVSVLNKGDKLHPLVIDEGEEPRFLAQVIAPIVTHGDPIGSVILCSKDQNI
TMGEMEAKIAETAAAFLSKQMEQ"
misc_feature 180685..181227
/locus_tag="Amet_0162"
/note="stage V sporulation protein T; Region: spore_V_T;
TIGR02851"
/db_xref="CDD:131898"
misc_feature 180703..180831
/locus_tag="Amet_0162"
/note="looped-hinge helix DNA binding domain, AbrB family;
Region: lp_hng_hel_AbrB; TIGR01439"
/db_xref="CDD:200102"
gene 181462..183060
/locus_tag="Amet_0163"
/db_xref="GeneID:5310206"
CDS 181462..183060
/locus_tag="Amet_0163"
/note="PFAM: multi antimicrobial extrusion protein MatE;
polysaccharide biosynthesis protein; virulence factor MVIN
family protein;
KEGG: swo:Swol_0081 stage V sporulation protein B"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_001318059.1"
/db_xref="GI:150388010"
/db_xref="InterPro:IPR002528"
/db_xref="InterPro:IPR002797"
/db_xref="InterPro:IPR004268"
/db_xref="GeneID:5310206"
/translation="MKKETFLKGAFILGMAGLVVKVLGAFFRIPLGIIIGSEGLGYYQ
VGYPIFTLLLSFSTQGFPTAISKLVSEKRAKGNPGGAHKVFRTSFSILLGLGVIGSLT
LGFGAHYLVTKVVQSPNAYYAVLALAPALFFVPLLAAFRGYFQGMKNMAPTAISQVVE
QAGRVILGLTLAVVLLNRGVHYAAAGAAFGATIGGVFGLSVISIIYLRHKKRILAQFD
RLPDEQEEPTRGIIKDLVTIAVPITIGGAVMPLINIVDTMIVLRRLQAIGFTYEEANS
LFGQLTGMAATLVNLPQVLTVALAMSMVPVISESKTRGDYDTIRADTQSAMRVSIMIG
LPAAIGLAVLSGPIMQLLFPNEPASVGEILFFLSLAVLFLTQLQTLTGVLQGLGKPFI
PVRNLMIGAGTKLVVTYVLTGVPALNVRGAAIGTVVAYLVAAVLNFIDVKKYTGTKFD
LYQTFVKPIVAVIFMGVTVGVTYAQLSGIIGNSLATISAIGIGAVIYGGILLKTDAIT
QDDFDLLPGGGKISKVLKKAGLMK"
misc_feature 181477..182889
/locus_tag="Amet_0163"
/note="stage V sporulation protein B; Region: spore_V_B;
TIGR02900"
/db_xref="CDD:163065"
misc_feature 181477..182394
/locus_tag="Amet_0163"
/note="MatE; Region: MatE; cl10513"
/db_xref="CDD:209159"
gene 183074..184534
/locus_tag="Amet_0164"
/db_xref="GeneID:5310207"
CDS 183074..184534
/locus_tag="Amet_0164"
/note="TIGRFAM: MazG family protein;
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase; MazG nucleotide pyrophosphohydrolase;
KEGG: cpr:CPR_2489 MazG family protein"
/codon_start=1
/transl_table=11
/product="MazG family protein"
/protein_id="YP_001318060.1"
/db_xref="GI:150388011"
/db_xref="InterPro:IPR000878"
/db_xref="InterPro:IPR004518"
/db_xref="InterPro:IPR011551"
/db_xref="GeneID:5310207"
/translation="MGKLIIVGLGPGGDEHITVAGLQAMKNHEHVYLRTERHPVVSYL
KTEGIRFKTFDAVYEEVESFQGVYDQITNQVLTMMEQGDVVYAVPGNPYVAETTVQQL
IKKCDELQLERKVYPAMSFVDAMFVALELDPVDGFQLVDGLQLEEQRPDPSRANIITQ
VYDPFIASEVKLRLMDYYDDEQEIFVVKGAGIPGVQRIEQIPLYQLDRLDWIDYLTSV
FIPRIDSPQKKYYNMNNLIEIMERLRGKDGCPWDVEQTHESLKPYLIEEAYEVLETID
EKDDFGLEEELGDLLLQVVFHAQVAHERGAFRIQDVIEGICQKLVFRHPHVFGEVEAE
DSTTVLKNWEALKKEEKQITSLSQSMKSIPKELPALMRAYKIQKKAKQVGFDWPDVRE
AVEKVHEELQELLEAKAEGEVEHIQEESGDLLFAVVNVLRFFKVDPEVALNKTNQKFV
KRLHYIEEAAKSQKLNLEDMTLEEMDILWEKAKKNE"
misc_feature 183077..184531
/locus_tag="Amet_0164"
/note="Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only]; Region: COG3956"
/db_xref="CDD:33737"
misc_feature 183080..183742
/locus_tag="Amet_0164"
/note="N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins; Region:
YabN_N; cd11723"
/db_xref="CDD:212509"
misc_feature order(183104..183106,183338..183346,183353..183358,
183431..183436,183548..183550,183632..183634,
183638..183643,183716..183724)
/locus_tag="Amet_0164"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212509"
misc_feature order(183122..183133,183137..183139,183344..183361,
183371..183376,183380..183385,183416..183418,
183422..183433,183437..183442,183449..183454,
183488..183502)
/locus_tag="Amet_0164"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212509"
misc_feature 183779..184114
/locus_tag="Amet_0164"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature order(183779..183781,183788..183790,183842..183847,
183854..183856,183863..183868,183875..183880,
183887..183889,183896..183898,183911..183913,
183920..183925,183932..183949,183953..183955,
183962..183964,183989..183991,183998..184012,
184016..184024,184028..184033)
/locus_tag="Amet_0164"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature order(183872..183874,183881..183883,183929..183931,
183938..183940)
/locus_tag="Amet_0164"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature 184175..184522
/locus_tag="Amet_0164"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature order(184175..184183,184187..184192,184199..184201,
184211..184213,184220..184228,184262..184267,
184283..184288,184319..184327,184331..184339,
184343..184348,184352..184354,184373..184381,
184388..184390,184394..184423,184430..184435,
184442..184444,184487..184489,184496..184498,
184508..184510)
/locus_tag="Amet_0164"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature order(184226..184234,184259..184261,184271..184273,
184280..184282,184316..184318,184325..184330,
184337..184339)
/locus_tag="Amet_0164"
/note="active site"
/db_xref="CDD:212136"
misc_feature order(184268..184273,184280..184282,184325..184330,
184337..184339)
/locus_tag="Amet_0164"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
misc_feature order(184271..184273,184280..184282,184328..184330,
184337..184339)
/locus_tag="Amet_0164"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212136"
gene 184646..184924
/locus_tag="Amet_0165"
/db_xref="GeneID:5310208"
CDS 184646..184924
/locus_tag="Amet_0165"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_001318061.1"
/db_xref="GI:150388012"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:5310208"
/translation="MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQL
VGFGTFEVRERKPRQGRNPRNPEQVIEIPASKAPVFKAGKTLKEKINV"
misc_feature 184649..184912
/locus_tag="Amet_0165"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(184649..184654,184661..184663,184670..184672,
184682..184684,184724..184726,184733..184738,
184745..184750,184760..184774,184781..184786,
184799..184801,184868..184873,184883..184885,
184889..184891,184910..184912)
/locus_tag="Amet_0165"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(184649..184657,184721..184723,184766..184768,
184772..184774,184778..184783,184790..184792,
184802..184804,184808..184813,184817..184819,
184826..184837,184868..184870,184880..184882,
184886..184888,184895..184897)
/locus_tag="Amet_0165"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 184973..185221
/locus_tag="Amet_0166"
/db_xref="GeneID:5310209"
CDS 184973..185221
/locus_tag="Amet_0166"
/note="PFAM: RNA-binding S4 domain protein;
KEGG: cpf:CPF_2801 S4 domain protein"
/codon_start=1
/transl_table=11
/product="RNA-binding S4 domain-containing protein"
/protein_id="YP_001318062.1"
/db_xref="GI:150388013"
/db_xref="InterPro:IPR002942"
/db_xref="InterPro:IPR006118"
/db_xref="GeneID:5310209"
/translation="MRLDKYLKISRIIKRRTVAKEACEGGRVSINGKTAKPGTEVAVG
DEIEIRFGDKVLRAEVTRLAEHVKKDEAKEMFQIIENN"
misc_feature 184973..>185122
/locus_tag="Amet_0166"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(184976..184978,185012..185017,185021..185026,
185030..185035,185042..185047,185051..185053,
185072..185077,185078..185092,185096..185098)
/locus_tag="Amet_0166"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 185320..185640
/locus_tag="Amet_0167"
/db_xref="GeneID:5310210"
CDS 185320..185640
/locus_tag="Amet_0167"
/note="KEGG: dsy:DSY3280 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318063.1"
/db_xref="GI:150388014"
/db_xref="GeneID:5310210"
/translation="MDEKVFSLLEKMYIEMQEMKSSMATKEEMQEIGSTMATKEEMQQ
GFRKVNQDMARLEAKMDENHKALYDGYKQSIEGINAINERVDRLADKVDNQELKLQVV
KSAK"
gene 185796..186791
/locus_tag="Amet_0168"
/db_xref="GeneID:5310211"
CDS 185796..186791
/locus_tag="Amet_0168"
/note="TIGRFAM: SpoIID/LytB domain protein;
PFAM: Stage II sporulation D domain protein;
KEGG: tte:TTE2451 sporulation protein and related
proteins"
/codon_start=1
/transl_table=11
/product="SpoIID/LytB domain-containing protein"
/protein_id="YP_001318064.1"
/db_xref="GI:150388015"
/db_xref="InterPro:IPR013486"
/db_xref="InterPro:IPR013693"
/db_xref="GeneID:5310211"
/translation="MLKFRKISILFFVMILIVALIGCRAAERPEDDQTPDQAEEGEQP
PIPDEITRGEGEEPVLKVYIHETGEIREMSIEEYLIPVVAGEMTNDWPEEALAAQAIL
ARTFVMEFITDKGGSKYEGAHVSTDIEEAQAWSEEEVNDLVTQAVETTRGQVMVYEGQ
YVKSWFHAHAGMQTATAQEGLGFEAEEPPYIQVIESPDSQEAPEDDANWTETFTKAEI
IAAAQESGQEPGDFTAIEVAETGPSGRATQLQIGEATVAAPAFRIALDSTRMKSTKLE
SVQVEGDQVTMSGTGYGHGVGMSQWGAYQMAQDGSSAEDIVNHYFKDVQIMKLWE"
misc_feature 185973..186266
/locus_tag="Amet_0168"
/note="Stage II sporulation protein; Region: SpoIID;
pfam08486"
/db_xref="CDD:203956"
misc_feature 186003..186779
/locus_tag="Amet_0168"
/note="SpoIID/LytB domain; Region: SpoIID_LytB; TIGR02669"
/db_xref="CDD:200209"
gene 186860..187150
/locus_tag="Amet_0169"
/db_xref="GeneID:5310212"
CDS 186860..187150
/locus_tag="Amet_0169"
/note="PFAM: YabP family protein;
KEGG: tte:TTE2450 hypothetical protein"
/codon_start=1
/transl_table=11
/product="YabP family protein"
/protein_id="YP_001318065.1"
/db_xref="GI:150388016"
/db_xref="InterPro:IPR012504"
/db_xref="GeneID:5310212"
/translation="MEERKKTNHRGHSLILENREKLSISGVEHVNSFNSELIVVETID
GVLTLKGEDLDVSKLSLDDGNASIQGRIYSMIYSDRSSLGTKGSGLLSKMFK"
misc_feature 186893..187147
/locus_tag="Amet_0169"
/note="YabP family; Region: YabP; cl06766"
/db_xref="CDD:208537"
gene 187283..187792
/locus_tag="Amet_0170"
/db_xref="GeneID:5310213"
CDS 187283..187792
/locus_tag="Amet_0170"
/note="TIGRFAM: Spore cortex biosynthesis protein YabQ;
KEGG: tte:TTE2446 hypothetical protein"
/codon_start=1
/transl_table=11
/product="spore cortex biosynthesis protein YabQ"
/protein_id="YP_001318066.1"
/db_xref="GI:150388017"
/db_xref="InterPro:IPR014242"
/db_xref="GeneID:5310213"
/translation="MMYSISQEAYILLATIYGGILIGFIYDLYRIFRGVFKPSKKATV
IQDLLFWTMIFFVSFYVLIFSNQGALRFYNFLGFVIGAVGYQLLLSNLVLRALVFIIR
KLQHFFKDLYQIAVYPFRLGKFMLAGPVTYCKNKGKPVYYKTKKLSRLPGRIKKGITK
SVGTYFKKK"
misc_feature 187316..187540
/locus_tag="Amet_0170"
/note="Spore cortex protein YabQ (Spore_YabQ); Region:
Spore_YabQ; pfam09578"
/db_xref="CDD:204269"
gene 187819..188121
/locus_tag="Amet_0171"
/db_xref="GeneID:5310214"
CDS 187819..188121
/locus_tag="Amet_0171"
/note="PFAM: Septum formation initiator"
/codon_start=1
/transl_table=11
/product="septum formation initiator"
/protein_id="YP_001318067.1"
/db_xref="GI:150388018"
/db_xref="InterPro:IPR007060"
/db_xref="GeneID:5310214"
/translation="MKRKKKRFNKMKIYMLGIVVLVGGSVTTTLYDQQKEMRYLDQRE
AALHEEIERLSGDVQHLRTRLEDSGTDEYINGIAREQLKMVGEDEIIFIDLNRSKN"
misc_feature <187909..188106
/locus_tag="Amet_0171"
/note="Septum formation initiator; Region: DivIC; cl11433"
/db_xref="CDD:209318"
gene 188282..188698
/locus_tag="Amet_0172"
/db_xref="GeneID:5310215"
CDS 188282..188698
/locus_tag="Amet_0172"
/note="PFAM: RNA binding S1 domain protein;
KEGG: cth:Cthe_2662 RNA binding S1"
/codon_start=1
/transl_table=11
/product="RNA-binding S1 domain-containing protein"
/protein_id="YP_001318068.1"
/db_xref="GI:150388019"
/db_xref="InterPro:IPR003029"
/db_xref="GeneID:5310215"
/translation="MPVQVGTVVEGTVSGITNFGAFIDLGEGQTGLVHISEVADDYVK
NIRDYLKDDQKVKVKVLSIGKDGKISLSIKQTALPKKKSVKPAEVDFRKTESNYGVSF
DDKVSRFLKDSDEKMQSVKSKGKDGRKGNGYNSKRA"
misc_feature 188282..188680
/locus_tag="Amet_0172"
/note="hypothetical protein; Provisional; Region:
PRK05807"
/db_xref="CDD:180268"
misc_feature 188297..188503
/locus_tag="Amet_0172"
/note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_hs4; cd05692"
/db_xref="CDD:88447"
misc_feature order(188321..188323,188345..188347,188375..188377,
188381..188383)
/locus_tag="Amet_0172"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88447"
gene 189070..191472
/locus_tag="Amet_0173"
/db_xref="GeneID:5310216"
CDS 189070..191472
/locus_tag="Amet_0173"
/EC_number="3.1.3.16"
/note="KEGG: cth:Cthe_2681 serine phosphatase;
TIGRFAM: Sporulation stage II, protein E;
PFAM: Stage II sporulation E family protein;
SMART: protein phosphatase 2C domain protein"
/codon_start=1
/transl_table=11
/product="sporulation stage II, protein E"
/protein_id="YP_001318069.1"
/db_xref="GI:150388020"
/db_xref="InterPro:IPR001932"
/db_xref="InterPro:IPR010822"
/db_xref="InterPro:IPR014221"
/db_xref="GeneID:5310216"
/translation="MADREKITPYIRATVELEGLQSITKSRFSIPYLSKKIVILHLIG
FLLGRASILEGLTPFGIAFFAALIVKESKGATVGLSTLIGIITIQGISGSVHYGVTLA
IITGLFYFVLNGKKLSTIQVALISSGIYLGIGSLAFTFQDFYVYDLAMLSFETIVVFV
VIYIASYALPVGLHRSNRKILSTEEIICVTIIAALALSGVNDIMIMSLSLKNILGILL
TILFAYNGGAGVGAAVGVTLGLITSMSTGSTPVVIGVFAFSGLLAGIFKDLGKTGSAL
GFLMGNAILTFYINGYYEVLIQFREVMGAFILFILMPKEWIAQLEKFCNTKNGILNTS
RSHSERMKKITNERLLDFSSTFAELSATFESIAEKQQIFAQEDLSKLMERAVNKVCGD
CGMKRSCWEKNFNTTYQAMNDLLIQIETTEELDPKDLPSGLQKRCIYPKQILENMIHV
YEINQVNMLWQNRLRESRDLVGEQMKGVSKIIGELAQELNGSIKFDVELEDAIYVALD
QHGLAVKNIMVANDEGGNLEITVEKRPCYNRESCTQSFIPVISQVVGTKLVKQPKNCN
LKNAQEGCRFTLVEARKFDASTKVARAKKEGNTLCGDSYTFMDLRNNQYMMAISDGMG
TGDKAYIQSNATISMLEKMMEAGFEREIAINTINSMLMLKSTEEMFSTIDLALLDLYK
GTVDFVKVGSAATFIKERGGKIKEINSSTLPIGILSGIQVEGNVKELKDDEFIIMVSD
GILEIDEAGDGKWLRRFLANIDTRNPQELADKILYRAMEFTNNKALDDMTVMVTKVWK
TK"
misc_feature 189181..191460
/locus_tag="Amet_0173"
/note="stage II sporulation protein E; Region: spore_II_E;
TIGR02865"
/db_xref="CDD:163048"
misc_feature 190912..191457
/locus_tag="Amet_0173"
/note="Stage II sporulation protein E (SpoIIE); Region:
SpoIIE; pfam07228"
/db_xref="CDD:203597"
gene complement(191711..192133)
/locus_tag="Amet_0174"
/db_xref="GeneID:5310217"
CDS complement(191711..192133)
/locus_tag="Amet_0174"
/note="PFAM: helix-turn-helix domain protein;
KEGG: tte:TTE2174 predicted transcriptional regulator"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_001318070.1"
/db_xref="GI:150388021"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:5310217"
/translation="MNSIGERIRFSRKANHLTLTDVNKLTGLSIGNLSELENNKFMPS
TNALLAFKKLFQVSIDWLLTGKYSNEMTTNPQIEVSDITYESGPVSFYSLSSDEQRLI
ESYQGLSVEDQRAIWGFISVASKKYAKDKTSPLPKQQK"
misc_feature complement(191948..192121)
/locus_tag="Amet_0174"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(192020..192022,192095..192097,
192107..192109))
/locus_tag="Amet_0174"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(192023..192025,192098..192100))
/locus_tag="Amet_0174"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(192017..192022,192032..192034,
192041..192043,192074..192079))
/locus_tag="Amet_0174"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 192289..192516
/locus_tag="Amet_0175"
/db_xref="GeneID:5310218"
CDS 192289..192516
/locus_tag="Amet_0175"
/note="SMART: helix-turn-helix domain protein;
KEGG: tte:TTE2173 hypothetical protein"
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="YP_001318071.1"
/db_xref="GI:150388022"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:5310218"
/translation="MRRGMVKRRLTRLGSAVHGRLVQLNMTQRELAKEIGTSEVYLSM
ILRGRRSGNKYRMKIVEQLDLDETFTDTNNH"
misc_feature order(192340..192342,192352..192354,192427..192429)
/locus_tag="Amet_0175"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(192349..192351,192424..192426)
/locus_tag="Amet_0175"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature 192355..>192441
/locus_tag="Amet_0175"
/note="Helix-turn-helix; Region: HTH_3; pfam01381"
/db_xref="CDD:201759"
misc_feature order(192370..192375,192406..192408,192415..192417,
192427..192432)
/locus_tag="Amet_0175"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 192553..192720
/locus_tag="Amet_0176"
/db_xref="GeneID:5310219"
CDS 192553..192720
/locus_tag="Amet_0176"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318072.1"
/db_xref="GI:150388023"
/db_xref="GeneID:5310219"
/translation="MAFYNEVAELKKRVKELASQVEEGKAEEQLKKVQAHSQEVDQIL
KEYMMKNKANG"
misc_feature 192568..>192684
/locus_tag="Amet_0176"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
gene 193020..194423
/locus_tag="Amet_0177"
/db_xref="GeneID:5310220"
CDS 193020..194423
/locus_tag="Amet_0177"
/EC_number="3.4.21.102"
/note="TIGRFAM: carboxyl-terminal protease;
PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding
domain 1 protein; peptidase S41;
KEGG: cth:Cthe_1930 carboxyl-terminal protease"
/codon_start=1
/transl_table=11
/product="carboxyl-terminal protease"
/protein_id="YP_001318073.1"
/db_xref="GI:150388024"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR002477"
/db_xref="InterPro:IPR004447"
/db_xref="InterPro:IPR005151"
/db_xref="GeneID:5310220"
/translation="MKNIIKLMKMKKPTIVLVFLIALLTTSAVYAQPASDYEMELIRH
YIRGSYVEPIDLDEITGQTPEEMFSGLDDYSTYFPKEDLEMFLEDVRGEFAGIGVYIT
EQMGKVIIAEPIENSPAQRAGIQPGDEILSVDGEDVKGRPLDVVAAMVKGPEGTQVKI
EVKRQGQEDTIIFSMDRAFITVNPVAHQVIEDIGYIEIKSFNEHMTENIEKVLMGFKE
QNVDKLIIDLRNNPGGSLDEAVKLSRLLLPKGPIVHIQYRDHQTTVVSYLEEPPFENM
VVLINEASASASEIFAVAAKESGIATLIGKTTFGKGSVQRVYTLPTGTGFKLTEARYL
SPEENEIDNVGVAPHIEVERFVPDVLTVDFLPLKMTRKPQIGDEGSDVEGAQQRLKAM
GYTIKDPQGVMGESTYQAIYQFQEDAGLYPYGILDFSTQGALDRLFNQWIQGPDQDEQ
LKHAVRHFSGYSMFVVK"
misc_feature 193134..>193259
/locus_tag="Amet_0177"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 193158..194078
/locus_tag="Amet_0177"
/note="C-terminal peptidase (prc); Region: prc; TIGR00225"
/db_xref="CDD:161775"
misc_feature 193299..193553
/locus_tag="Amet_0177"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(193305..193316,193320..193322,193455..193460,
193467..193472)
/locus_tag="Amet_0177"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <193596..194078
/locus_tag="Amet_0177"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(193875..193877,193950..193952)
/locus_tag="Amet_0177"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
misc_feature 194151..194321
/locus_tag="Amet_0177"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
gene complement(194513..195079)
/locus_tag="Amet_0178"
/db_xref="GeneID:5310221"
CDS complement(194513..195079)
/locus_tag="Amet_0178"
/note="PFAM: S-layer domain protein;
KEGG: cth:Cthe_2384 S-layer-like domain containing
protein"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318074.1"
/db_xref="GI:150388025"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:5310221"
/translation="MKKKLTLVLVLILFLHVGLVSATASPLEQKAGDTLRGLGIYSGY
EDGTLRLGNSITRAEFTTLAVKIVGLSHQHESRMGKTPFSDVPSDFWGSGYINIAVDE
SLMSGYPNQTFRPEGNITYAETLSVLVSLLGYKDDAVKLGQWPENYLQQAEGLNLTKN
ISHDANHVVTRGDVAVLIHNALSVQLKK"
misc_feature complement(194900..>194983)
/locus_tag="Amet_0178"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature complement(194711..194836)
/locus_tag="Amet_0178"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene complement(195233..197347)
/locus_tag="Amet_0179"
/db_xref="GeneID:5310222"
CDS complement(195233..197347)
/locus_tag="Amet_0179"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318075.1"
/db_xref="GI:150388026"
/db_xref="GeneID:5310222"
/translation="MRIQRIIFILLLCILLLSSSASALPSGYSRSIVGEFHDMDITIN
NDFIRLEEDPFFYSGLLYVPLESLSTYLPMEIDYNQGSGYIDLLTGGFTNYRTEEEYS
VTLLQRNYLLAKLNQEQKQLETQLNNREFTPHQRITTLAEMEDYLQDRYDQLLEIPMT
IRLRRGTGDYYRLQITFPYEDRQDFREVAKRRIEYWVEDMLYSVRDLHDPYAQVEGWI
RDDRSDYTIDHTSYVDFESSQRWIDFDFIYDDSRVRRLHLHEAAYADEKKQGSSEKSI
RHQPLAIWVQNLEVRLDGQRLPLRGEVYQINNEIYLPLVDLADSFYFSFSYDETAHQL
DIFNDNFLWGDVPFQPNQLGQKQDSIDNVLKEIVSLEQELRRSRDRLYPHRQISSVTR
MEAYLRDYFSDYDGMELRIHFTEYRDHEYRLRIRISEEDSRLFDRNNHYILLDLVSDM
WDVIQDLYDPDAILVGSIRSSADDSDDSFYVFFESDEDYLDFDFADYDTSTTESVDAE
RLERELQRSLRRYNRRSLEVTFRYEAISTRRDIDLNIYFTQSRFYEWELEDKMDYLFD
LQREIESLYGEIGVNGRIIDESRDETALRFSFEQGHIRSYDLLTEIEAYLNRHYSRFS
FGGEVFSFDFSLSERDLDAFDLRLAGDFAQQENSWRAVEESEGDEFHAFVQQAVSYIK
RFWNVDVHPKVFDRNLSTIDLL"
gene 197652..204251
/locus_tag="Amet_0180"
/db_xref="GeneID:5310223"
CDS 197652..204251
/locus_tag="Amet_0180"
/note="PFAM: cell surface receptor IPT/TIG domain protein;
Fibronectin, type III domain protein;
KEGG: tte:TTE0165 hypothetical protein"
/codon_start=1
/transl_table=11
/product="fibronectin type III domain-containing protein"
/protein_id="YP_001318076.1"
/db_xref="GI:150388027"
/db_xref="InterPro:IPR002909"
/db_xref="InterPro:IPR003961"
/db_xref="GeneID:5310223"
/translation="MKKESQEKRLYKNKYKKKINIRRIIALSMVFTMLFTMLGIETLM
VFAEEDPNPIINKISIFRSYSNIENPDTYYIDIEGNHLEDIEILIRRPDGEIEELDDY
IYRSRVYVQVKVDPDNIADAIRVSGIGWVEIGEDDMPAIGSFDPSSRRVKAGQTLSIG
GESFANIGEANQITARYSRGNTITPITDEAGNIDINNNEINISNISGSGFQTIRFKKD
LEGQVLGGQEFDVEITHLYANIFQIYDDLSVSDDITIFPNQGVAGSRFTLEGESLLNT
NNMSVFFLRDLEAEHFTGENKARNINFIEGDDGAKDRFIAEVPEDISVGEYYIVLTNH
VADGEDAQEVVSREKVIEDKFLVIQDTNLGRITSVDPNKGPDSGVNNVTIEGRYIGSI
SPNIFSPAEGVEATKTFGARSLQLTYGDGTTAIGEYNQIGGDDLEVVKLERTLRAVIG
NEITFRPETSTNPHGQDRIRVNIPTYDLVEEDTPVDITFMIETEITYRESGVENTLTL
TEEIIREDGFTFQPSSYVPEIDVIIPERIEVEEGDGFYHLKEEEMLVAIYGENFMVTR
FEHDGQTFTRYPAILLGNEIILNRNEEDYDDENVPPASDEDRIKNASNTDLDMRIYND
DNQLVDGTEGNELGSKMVIRIPRDHEADLYRISPGRVGILQDVRMYNPIKDSSEYGNS
ITGAGKVRFVEVEQGLRPRINNVNPDVVTTEGGEEIVIRGSNFRENVRVFLDGEEITN
FDRSGAGDTITFMAPPGNPGETQLQVLNPEGGIATAPFRYVETYTDPVLLDFSPKEGS
TDTLVVVKGENLLKPDPTGTSTRDEEMKLIGTRVRLQGEDINNYNLDANRNINFIGYE
ALVDNKLLQRENDRGNRVTLSDYYHSVVLKDENTGNFYTITYDNQRNIILSDGLSNAY
IIESVHTEVNSRFITEDGQELLLRSEGGQDFIDINGKTLGVYTPYRVDVNTGEITGNK
VRVNHQGELMFRVPILPGDGYYDVEIVNPDTNRDGRYGNDGFRYYSQPNTNPRIEEII
PNEGSVEGGYTIRITGSDFLETATMKAGVHINGVEVPGGDIDISPAGDEITLRVPSYE
GNLREDFGVNRLSVPVVVVNPDGASDGIEDGFTYVVPTSNPEISSIRPGNGNASGGEL
VEIRGNDFRFYEPFDDENRDGIWNVEEEFNDLNKNGRWDDFRHFTMNDVENYLLYLHY
KEDIEGDIDSITPSYQWLGKDKTSILETVDEALKDLSQEALDEIIEKGFDETIRPVMP
RVTFGGRQAKIMGFGRGFIEVETPQHPEGNAPVLVVNNDAGMSPAHNFVYTSSDPTIE
EIIPPRGSRLGGDRIDILGRDFDRSTRRIYTGNTIENNSLVSEYTEDNNPLVRFTAIG
NRELPFEHDNSGRLTGTNRATVVLAGELTLRYDGSNRTVEVEIKDGDDFYKTTIEGYQ
GGLKYIPTSILKDEEDNPYIEENPDEALSLRGDELISIEVDDNRFLVERGYARDTEYV
NNRQIRVNTPAYFTVGNVPVFIINPDGGKSEGSFEYLFPDSRPRIIEILRDGQEPQVR
EEEGETIKILRVIYSGGNMIHIYGEDFRENTEVRIASIANIPSEDIEQDRVENPFNTG
PEILDRLTFEMPNVGEETVGERHRVVVSNRDGGSAYSDGLVPPIYIEFFRGESNPSVE
NIEPMEGPASGGTRVRIEGDDFREAMEGFEDGALNVHFGEVSIDEDDINYIDYRTLEV
VAPSSERAGTVDIRVENPDGTLAIYRNAFTFISKPKIERTDPRGIFANDVEREVTIEG
RMFQGGAMVVIGGSLVRSDDVTADMEVQGEGIYDVDESGNNIEYSVVGGRQLPNVIVE
DQYKMTLRFLEDTELDNHDLIIINPDGGISDPYNDFDYEIPIPTKPLVLEAIPGFEGT
VQLIWSDSDPGVLNAADHYEIYGRRSGDSQYSLLSDTEAAQYLVRGLENGVRYDFMVR
ALNEYGSAIEFAEITVRTLSAREDDKAREKEEQLEREQQQLDQEGKEEVINGTLVKTL
GRDQIPVGQGAYVVDFSPAQYSSHDRFVVAIPVEVLNTITRQVTITDGRGSFTFSPSA
FYTREVIQIPRDEQKDATVRIIFEKVNGQAEQSLIGAIPRTQRRASDIYGIDFELQTG
RNTTALHRMLTQGRFNLNFDAYRYPNANGNGIFMAQYDASQGQFTGLGNNNQVAVQYP
GRYMLLSDR"
misc_feature 199749..199997
/locus_tag="Amet_0180"
/note="Immunoglobulin-like fold, Plexins, Transcription
factors (IPT). IPTs are also known as Transcription factor
ImmunoGlobin (TIG) domains. They are present in
intracellular transcription factors, cell surface
receptors (such as plexins and scatter factor...; Region:
IPT; cd00102"
/db_xref="CDD:28986"
misc_feature 200721..>200912
/locus_tag="Amet_0180"
/note="Immunoglobulin-like fold, Plexins, Transcription
factors (IPT). IPTs are also known as Transcription factor
ImmunoGlobin (TIG) domains. They are present in
intracellular transcription factors, cell surface
receptors (such as plexins and scatter factor...; Region:
IPT; cl15674"
/db_xref="CDD:210144"
misc_feature <201438..201593
/locus_tag="Amet_0180"
/note="Immunoglobulin-like fold, Plexins, Transcription
factors (IPT). IPTs are also known as Transcription factor
ImmunoGlobin (TIG) domains. They are present in
intracellular transcription factors, cell surface
receptors (such as plexins and scatter factor...; Region:
IPT; cl15674"
/db_xref="CDD:210144"
misc_feature 202644..202928
/locus_tag="Amet_0180"
/note="Immunoglobulin-like fold, Plexins, Transcription
factors (IPT). IPTs are also known as Transcription factor
ImmunoGlobin (TIG) domains. They are present in
intracellular transcription factors, cell surface
receptors (such as plexins and scatter factor...; Region:
IPT; cd00102"
/db_xref="CDD:28986"
misc_feature 203304..203579
/locus_tag="Amet_0180"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(203304..203306,203496..203498,203541..203543)
/locus_tag="Amet_0180"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature order(203544..203549,203553..203558)
/locus_tag="Amet_0180"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
gene 204333..207137
/locus_tag="Amet_0181"
/db_xref="GeneID:5310224"
CDS 204333..207137
/locus_tag="Amet_0181"
/note="PFAM: S-layer domain protein;
KEGG: tte:TTE0166 S-layer homology domain"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318077.1"
/db_xref="GI:150388028"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:5310224"
/translation="MGKMLQRRLAGCMGILVLFSLLLVPTYAIEGLSSHPVYEGVSDP
IERYNETQFNDIDNHWAREAIQEAAAFALMSGVDNQRFQPDGILSYADALTVIVKAIG
QEGEAQQLGENQAPADVRNLSLLSTADHWIQGTIQVAIENGIVTPEEAGEISNLTPNQ
LETIGEQIEDQLDNYNEGNYTAQELAAIEQQIRQKLEINSTWNQPTTRQQVGQWIARA
LKLDPVYGDKMTKVRQFKDWENIDTEKVPFIEAMLQGNYMSGTSGTTFVPRGQLTRGQ
MAQIITKAHDDMMDARGITKYTGDITAVETVQQDQQDVTLFTIRKQDQSHHVLSAVAG
SHDFIVKKDGTMGLSNRLRRGDVLRYYINEENKVLYGVVEPLQSREIEGFVELVNSES
RQLMVTDFADQRHVLQVAPNADITVNQRASSLNNILYGQEVVVTVKGNNVTKIEAFLE
EDPDRHGYIPPESRIKVGDILFIDENEVEIRVDNQREKYRIVNGTQVLRNDQRANLFE
VKVGDRVILTFDDIYSPDISSIRVEDHERHIDGIYRGRLEQVNPRGNEIVLGSLVRYE
NGRWQSVRDTQMKLRVDNGNLYQGPSQTDLTGLSRFRGSEVYVAVENSYGTPGVAKLL
TKDGSTLYYDSQISDVEFATNRMVVDGHSMGFHPGTIVVQNNRLVDVLNLDRGQTIHL
AGDLNRGGRDAAFVSIEGSSIIDDRIDSSRIVVYRGNIEDIGHYGVTIGRLGYQLNYL
QLENHRWQEVGRREKFTLTEDSFIFDSELELEIDSSHFIDSRFIDPQDIEDDELRRRV
EDDFYFDKSAYFVVRERTYGDTVDREVLALNITPHVIYDRGSVQTEHSATASIEGVDL
DQGQITLGNVRNWNGLNNRWERSQGQQEIDIHKTVILLNDRPISQEEVYLLRSGAQAY
LIKNKNVSTQDDAYILIVEQ"
misc_feature 205032..205166
/locus_tag="Amet_0181"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 207154..208629
/locus_tag="Amet_0182"
/db_xref="GeneID:5310225"
CDS 207154..208629
/locus_tag="Amet_0182"
/note="PFAM: S-layer domain protein;
KEGG: tte:TTE0167 S-layer homology domain"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318078.1"
/db_xref="GI:150388029"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:5310225"
/translation="MKKTVMICFVLLLFMAASVQGFALQIPGYEGGIQNEMAYREVIF
ITGEPIVVEGTLNITDRGDRVSYIYRDLSNAARGVTMTRNVTIDKEIIENGSGQRQEI
YSVSRYRESIRVDGVRYELTEQNHPWSKSNIYHQKPGVTYFAGNWDGKKVYTINRNEG
SVTVQTTGNVVGYDHNWGTTETQTISHYIDYDRQVDEEDSIRWQGTVEVDVANNRTKS
YHYEPNTPSQISFRGGYLLTQRDESVLKYSYDLPRVDEEGFTLRGRNIGTESTSLNTN
PMNQRLTIPAMRDISGHWAERHVLLLASLEAVYPNSTDFGPNLPMSRGDFARAVAILM
DIKQEEPENIRRIRGQEPVEAPQTFNDVSQAHPNQSFIEAVYERGIMAGVGDNSFKPN
ESLTRAQAAVVLIKALGFENLAPIQQYSTGFRDDQHIPLWARNAVYLARELGLVSGST
DGYYYPNNTLTKAEAAAMLTNFIDYLREDIRYDYRERILNY"
misc_feature 208225..208356
/locus_tag="Amet_0182"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 208420..208551
/locus_tag="Amet_0182"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 208903..210507
/gene="pyrG"
/locus_tag="Amet_0183"
/db_xref="GeneID:5310226"
CDS 208903..210507
/gene="pyrG"
/locus_tag="Amet_0183"
/EC_number="6.3.4.2"
/note="CTP synthase; cytidine triphosphate synthetase;
catalyzes the ATP-dependent amination of UTP to CTP with
either L-glutamine or ammonia as the source of nitrogen;
in Escherichia coli this enzyme forms a homotetramer"
/codon_start=1
/transl_table=11
/product="CTP synthetase"
/protein_id="YP_001318079.1"
/db_xref="GI:150388030"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR004468"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:5310226"
/translation="MATKYIFVTGGVVSSLGKGITAASLGQLLKSRGLKVTIQKFDPY
INIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLSKNSSVTSGKVYWSVITK
ERKGEYLGGTVQVIPHITNEIKERIYRVSKEGNFDVVITEVGGTVGDIESLPFLEAIR
QVKYDVGQENVMYIHVTLVPYLGRAGELKTKPTQHSVKELRSIGIQPDVVVCRTEKAL
SNEMKDKIGLFCNLDPGNVVQNIDADSLYEVPLLLKEEGLDTMTLRRLGLEAGEPQLE
EWQEIVRRDKNPQNSITIALVGKYVELRDAYLSVSEALTHAGIHNEAKVNIEWIHSGE
LAKDNVGEKLGQAHGILVPGGFGDRGVEGKILALQYARENEVPLLGICLGMQLAVVEF
ARNILGLAGAHSSELDPETPYPVIDLMPEQKDVEDMGGTMRLGLYPCKIYPKTKAKEA
YGEDLIYERHRHRYEYNNEYRDQLIQAGLVISGISPDERLIEIVELKDHPWFVAAQFH
PEFKSRPTRPHPLFREFVRASVENKK"
misc_feature 208909..210504
/gene="pyrG"
/locus_tag="Amet_0183"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:180047"
misc_feature 208912..209676
/gene="pyrG"
/locus_tag="Amet_0183"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:48377"
misc_feature order(208942..208944,208951..208962,209020..209022,
209026..209034,209110..209112,209116..209118,
209125..209130,209326..209328,209332..209334)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="Catalytic site [active]"
/db_xref="CDD:48377"
misc_feature order(208945..208959,209020..209022,209335..209337,
209467..209475,209575..209577)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="active site"
/db_xref="CDD:48377"
misc_feature order(209020..209034,209332..209337,209353..209355,
209467..209475,209575..209577)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:48377"
misc_feature 209776..210480
/gene="pyrG"
/locus_tag="Amet_0183"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature order(209959..209973,210046..210051,210058..210060,
210118..210120,210283..210294,210424..210426,
210430..210432)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="active site"
/db_xref="CDD:153217"
misc_feature order(209965..209967,210049..210051)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature order(210046..210048,210424..210426,210430..210432)
/gene="pyrG"
/locus_tag="Amet_0183"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 211296..213587
/locus_tag="Amet_0184"
/db_xref="GeneID:5310227"
CDS 211296..213587
/locus_tag="Amet_0184"
/note="PFAM: copper amine oxidase domain protein;
KEGG: mta:Moth_2343 copper amine oxidase-like"
/codon_start=1
/transl_table=11
/product="copper amine oxidase domain-containing protein"
/protein_id="YP_001318080.1"
/db_xref="GI:150388031"
/db_xref="InterPro:IPR012854"
/db_xref="GeneID:5310227"
/translation="MKQNSYLIKALLKEAQPQKRIQITRRVLQVKRKLALLLALVMVI
SMIPMSAFAASGNTETIIRGGVPRVADDYDSEVRRGEFTSLNSIIIRQDNYSVDATNF
QLRIENGSWSGNAAYSVTDGVYGVDHDGEYSIASRTDRVLDIQLDRAITSGNDFEMPL
YFKADGSGPVRVTVDPLDSGITGGTFTVANTAAGATITTIDDVITFSEVGSLDPIRIE
ETSMGSLGEGTHRVRLRLPSNFEWTGSEPTVRFINGLNGKASDNVTRYDGQRDLEIEI
TIDEQSRTRGAILIEGAQIYATSAAREGDVEVRVSGGDVTSETFLVAKYSDFDVTVKA
DGEPAELISGRFESNFDDEAHELQTLVIEEEVRDALLNNRRTTVELPSWVKILGVDVD
VSGGDSNITFHGVEDDNEDRIENVRSGLYIFEEEDRGSNDIEFTIDSDSSDETKVELT
FYVSVQASREGDIEAVVSGRSGAEGTVVLGTARKAVDFEVVGAVTTLDIGTKGQPIPD
MIISEIDAEDILEGELIVNLSGGVTWDDYTVTVVDGDLEIDDVDDSNNQLILTFTNSD
TSSVPSTIEITNAAINVDRTPADGAVNARIAGDAVRPNFSSANGATDEGYFDTGWVHS
VKIADILAGGVAPGTDMPKVVLTIGSSTFTVDGNAEVAPAAPYIDAQNRTMLPLSIIG
RTLGAEVDWNEASRTVLVTKGSDRVLFTIGSDAMVVNGMSIPMRSQAVITGDRTFIPL
RDLGIALGVDVQWDEATRTVTIN"
misc_feature 213306..213581
/locus_tag="Amet_0184"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
gene 213738..214517
/locus_tag="Amet_0185"
/db_xref="GeneID:5310228"
CDS 213738..214517
/locus_tag="Amet_0185"
/note="KEGG: rno:690765 hypothetical protein LOC690765"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318081.1"
/db_xref="GI:150388032"
/db_xref="GeneID:5310228"
/translation="MKFKKCSLFVAGILIGGISMLGLTVYGDIANQVTAHLASHITFE
FDGVMKPVPRGYTTLSYEGRTYVPARFIAEGLGAEVVWDEADQNIIITGPEKEELKEP
EEQKPDLSEDEMTGEEEQEEEEQEEQEEEETRIIYDALPITYYDGDIRLRVQTIVIDD
DQTRVFVSLLNEGNVSIQLDQSATVITIDGKEYKQLDTRIVNPYVSAWYNDIRKDDNV
DSLVRMPVIPEDTEKLTIKFLVRENTLHAPQEKEVVFDIKL"
misc_feature <213921..214010
/locus_tag="Amet_0185"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
gene 214933..216078
/locus_tag="Amet_0186"
/db_xref="GeneID:5310229"
CDS 214933..216078
/locus_tag="Amet_0186"
/note="KEGG: swo:Swol_0134 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318082.1"
/db_xref="GI:150388033"
/db_xref="GeneID:5310229"
/translation="MKNYKNYVAAMTLGVLLASTGSGLTVYANTNTQQNTLNVEDQTE
VEGEEAFVLTYEEALEKALKQSYDQKSLMETIDQLEEIRKQAAQGVRFIPYGPQGDEL
AIRSLFGLRSTEINLQMAKKQEVTLEDMLAFKVRTEYDDIVKKKKEIELQVKMIENVE
KQLQQLSRKAGVGTASNYEHQVQLNKYNEENQKKSALEQELDNLYLKLNTTMGIDRTE
RYDVALEKEVEWMEDVNVDTHAKRMRSQHPSVWSQEQQIRLNELDIQLHVFNSSDSPY
EAKESELRKSQIELSSLKENIEQSVKSTYNQMKQLETQYETMKIMLEKAENDRDMAQL
RYDVGMGIALDVEMAEMPVTSIKNQMETLLISYEQVRMMFEKPWLVV"
misc_feature 215095..215571
/locus_tag="Amet_0186"
/note="Outer membrane efflux protein; Region: OEP;
pfam02321"
/db_xref="CDD:202204"
misc_feature <215713..216057
/locus_tag="Amet_0186"
/note="Outer membrane efflux protein; Region: OEP;
pfam02321"
/db_xref="CDD:202204"
gene 216408..217619
/locus_tag="Amet_0187"
/db_xref="GeneID:5310230"
CDS 216408..217619
/locus_tag="Amet_0187"
/note="TIGRFAM: efflux transporter, RND family, MFP
subunit;
PFAM: secretion protein HlyD family protein;
KEGG: dsy:DSY3360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_001318083.1"
/db_xref="GI:150388034"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:5310230"
/translation="MTKKVIYFLLLTLLLTTVLVGCSGEEEATTILEEEAYVPVEVER
AETKYIGNGVNLNGKIHANDEAMVLPKIPGRVTSVNVKLGDFVQKDSVLFTIDQKDVL
RSIEQAEQSVNLAQRSVEQAENAVETTKISFETTKENIENAEINLQRTKELFDAGAAS
RSQLEQAELAASRRPLETVENQIRQAEIGYQQALNQLSQAQIGYRQAQDALEDTVVRA
PMSGVISILNVVAGELAGGTQPLATIADINRVYFQVDVTENIVNMLGDGQEVVVNIPA
ALEGEIIGTIDFISSTANPNTRLYTVKVNIDNQERKIRTGMSGSMDLDLDGRDNVLVI
NSRAVLNQEGEDIVFVVEEDHAIERQVVLGMNTGAEVEIVEGLREGESVIVKGQQYVV
DGERVKIVGGE"
misc_feature 216525..217607
/locus_tag="Amet_0187"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 216609..216737
/locus_tag="Amet_0187"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 217050..217355
/locus_tag="Amet_0187"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 217623..220772
/locus_tag="Amet_0188"
/db_xref="GeneID:5310231"
CDS 217623..220772
/locus_tag="Amet_0188"
/note="PFAM: acriflavin resistance protein;
KEGG: dsy:DSY3359 hypothetical protein"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_001318084.1"
/db_xref="GI:150388035"
/db_xref="InterPro:IPR001036"
/db_xref="GeneID:5310231"
/translation="MSLSKIAVNKPVTTAMLMLVILLLGGISLARLPLDLMPDIEIPV
VIVTTSYSGVGPHEMENLVTRPIEDTVATVSDLEAVTSVSSQGSSMVMARFDFGTDMD
FAALEMREKVDMARGRLPDGATSPMVMKLDPNAMPVVMLSLSNGADLFELQTLAEDTI
QPRLERISGVASVSIIGDYTNEIEIKVDQQQLNAYGIGIDQLTQVISASNMNMPGGTV
ERGAEKLTIRTMGEFETVEEIGELPITLPSGSIIRLKDVAAVEVIQKEISTISRTNSQ
NGIGIQIQKQSGTNTVQVANSIDREVEKLRAEHPEFELITIMNQAEYIQDSITSVAKN
AVVGGLLAVLVLYVFLRNIGSTLIIATALPISIIATFVLLYFNGITLNMMTLGGLALG
VGMLVDNAIVVLENIYRYRSEGHSRKDAAIEGAKEVSMAVSASTLTTIAVFMPIIFVG
GITSILFGEFAMTVALSLAASLLVALTLIPMLCSKILKVETAVVGKPTEGMKPKKKRR
FPGFYEAFDRGFEALEQTYKKALGWGLRHRKSTVLLAILIFVGSVSSVFFVGVEFMPS
ADQGEISINVTLPTGSQLYETDDVLKQIEALIEPLEEIEITSTTVGGGGGLGGGLMGS
SENQGSMTVMLLGLSERSRSDVEVADEIRDLAKDIAGAEISVSTADGMAMGGSPIEIK
VKGDDLTVLEGITDDFRRSIRQVEGTRDVETSFTEGIPELQIHINKYEASTYGLTTAQ
VANAVRSFAFGNTVSQFRESGDETDIVIRGEESIRQDLANLEQLSIQTPMGGTVPLNQ
VADIHITQGPTAINREDQQRLATVTSDISGRDLVSVTRDIEALLVEYEMPEGYLYEIG
GENEQLEETFADLILAVVLAVVLVYMIMASQFESLMHPFTIIMSVPLAFSGGLLALFI
TGRTLNVTAFIGLLMLAGIVINNGIVLVDYINTLRSSGKERSEAIQIAGPVRLRPILM
TTLTTTLAMVPLALGIGEGAEMQAPMATTVIGGLLLSTVLTLLVTPVIYTLMDDFSAA
VKRKLKGKDKTAISSQKLG"
misc_feature 217626..220619
/locus_tag="Amet_0188"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
gene 220777..221364
/locus_tag="Amet_0189"
/db_xref="GeneID:5310232"
CDS 220777..221364
/locus_tag="Amet_0189"
/note="PFAM: regulatory protein, TetR;
KEGG: swo:Swol_0177 putative transcriptional regulator,
TetR family"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001318085.1"
/db_xref="GI:150388036"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:5310232"
/translation="MVREMKEKKILILESALRVFRQYGFHESKISMIAEEAGIGKGTV
YEYFDSKKEIYEETIFYTADIYLQEVERIILENHSIRERLIAIAKHLGNFTEKNMGTV
ENLIRNSNILSQETKVGLLEIREKLYNALSKTFSQWEDKLEIRDDLNSKMITMIFLGM
MKEFYEDALIFNKEDQGEIEIEDMIDVLLEGISKK"
misc_feature 220777..221352
/locus_tag="Amet_0189"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 220810..220947
/locus_tag="Amet_0189"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 221516..223780
/locus_tag="Amet_0190"
/db_xref="GeneID:5310233"
CDS 221516..223780
/locus_tag="Amet_0190"
/note="PFAM: Spore coat protein CotH;
KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I"
/codon_start=1
/transl_table=11
/product="spore coat protein CotH"
/protein_id="YP_001318086.1"
/db_xref="GI:150388037"
/db_xref="InterPro:IPR014867"
/db_xref="GeneID:5310233"
/translation="MQDKKRFFLLGIGLVILIVTILILLPGEQADELLVINEVMSSNG
YTVSDEEGDYADWIELYNGGEEPINLRGYFLSDDNTTVTKWQFPGVTIEPKAHLVVWA
SGKDMATEAGQVHTNFSISSQGEPIFLTRPDGRTIVDAIEVMAIPRDVSYGRETDGDS
QWVFFDIPTPGRSNNQVAGHEELLRGPTFSHVGGFYTDEITLALTTDESSKIYYTLDG
SEPDENALVYQGTITITPQMLEDHFPMQDIQQGDAPKAPLSFINTTAEDLSEEWGYDR
YRWVAPQGEQMMGAVVRARAYGEEGQASRIITHSYFVDENIYERFDLPVISISTDSKG
LFSYEEGIYIPGKVFYEWRNQNPTERVIGNTPANYNARTIEAERTAHIEFFEPNGVLG
FSQGAGLRIHGGFTRAWAQKSLRLYARRDYDQDNSFRYEVFPGATKAVNHEPLNEFRR
LILRNSGNDWSVTMFRDAFIQELVKDFNIDTQAHRPAIVFINGEYWGIHNIRERYDAN
YLETNYDVNPEDVVLINTSGPVVEEGFPEDYEHFENMLRFLEENDIKEQSNYEYIKTL
MDVENFIDYQIAGIYIANTDWLANNVRLWRLRTEEYQPGAPYGHDGRWRWMLYDVDFG
FAFDNQEMVQHNTLQWATTDQGEDRNAPQYTFLLRTLLQNEEFRNEFINRFEDHLKTT
FQEEYVINLINEMQSGIEKEMGYNIQRWPNFGSISVWNDNVEVMREFGRKRPAYMYEH
LMRQFDLQEEVHVN"
misc_feature 221618..221926
/locus_tag="Amet_0190"
/note="Lamin Tail Domain; Region: LTD; pfam00932"
/db_xref="CDD:201513"
misc_feature 222074..>222220
/locus_tag="Amet_0190"
/note="Chitobiase/beta-hexosaminidase C-terminal domain;
Region: CHB_HEX_C; pfam03174"
/db_xref="CDD:202566"
misc_feature 222710..223726
/locus_tag="Amet_0190"
/note="CotH protein; Region: CotH; pfam08757"
/db_xref="CDD:149727"
gene 223887..225806
/locus_tag="Amet_0191"
/db_xref="GeneID:5310234"
CDS 223887..225806
/locus_tag="Amet_0191"
/note="PFAM: S-layer domain protein;
KEGG: sth:STH3168 S-layer associated protein, putataive"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318087.1"
/db_xref="GI:150388038"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:5310234"
/translation="MKKNRKLIMIILTVVMVLATASAAYASSIAFDDINEVPWAKEHI
QRMVDKNIISGYVDDSTLKLVFKPANPVTRLESMQLIYKTLQETGQLESSSNYASKYN
SILENNNIPWGQPAVAYALEYEIIDEDDLAQFMSNGKQVNATREQIAMYFGRAMASSG
DLRQSPNLSFLDSEMINKDVVTYVDFLVRESIISGDNNNRFNPKSTITRAEMAAICSK
AYDVLESEPDIIIDISNPNNNNDKEEPAANSKTITRTIEQVNATDYILFAYNDKDQLE
LYQVERNAVIEIRGEREDLRDLRKGNEAELTFENDKLVKIEVNPQRDRVDGEIRNITH
FDDEEYALIVIEDPYRSSTRRTLRVDRSTQVIIFDDESSYDRLEVGDEVVVYYEDNNA
IKVEVYEDDRQIVGILDSNISFNRYPFTMEVRSFNNQLITYEIDHDATVQIDNRRRQV
EDLKRGDIVTLRMKDGKVTSIDASTTSTGRSNNEEGRIVSLTAGRPNNLIILTEDNEE
IQYELADNVVIYLDDSRADFYDLRTNYEVELEIEGGLVTEIEATKRGQNNAIEGEITR
FYDSIDRMIVRHRVQSTGRYEETSVYVTGDTVIIDEDGERIEMRHLDRGDEVFVNGSY
EDDIFVANRIIVLND"
misc_feature 223977..224114
/locus_tag="Amet_0191"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature <224433..224525
/locus_tag="Amet_0191"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 226053..227249
/locus_tag="Amet_0192"
/db_xref="GeneID:5310235"
CDS 226053..227249
/locus_tag="Amet_0192"
/note="PFAM: lipopolysaccharide biosynthesis protein;
KEGG: cth:Cthe_2347 lipopolysaccharide biosynthesis"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein"
/protein_id="YP_001318088.1"
/db_xref="GI:150388039"
/db_xref="InterPro:IPR003856"
/db_xref="GeneID:5310235"
/translation="MEEISLRELIETLLKQKKLIIGITMIAVLTTGLFSFFMLEPVYE
TRMVLMASNFTERLQPNQLSGNGVEGMLESLSQYPAMTLDTYRQQVTAPRVMRATIEE
LGLEEDYDVERLARAISLETLQNTNLITIKMQHGDPEKAALIVNTVGEKFVEFVSEKA
QEHASQSSQYVVSQMEVEEAQLDDALVELREFLSQPRGVSELQMELDARLSQATSFKT
QLTDLEIREPALQSAIQVAQAEGNTNSQIMINDNAGSQQITLESTETLLKIELAEVQS
NIQSFRTQITEIQDEIEELQVELQDKKHQERLINQRVNIAENNYDAFVKKYEELRVAE
SSQIGDASITVISRAFPTTTPIGPRKTLNVAIAGVLGVMIGVFAAFFIEYWKTSGKEQ
EALEIK"
misc_feature 226053..227204
/locus_tag="Amet_0192"
/note="Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope biogenesis,
outer membrane]; Region: GumC; COG3206"
/db_xref="CDD:33019"
misc_feature 226056..226496
/locus_tag="Amet_0192"
/note="Chain length determinant protein; Region: Wzz;
pfam02706"
/db_xref="CDD:111588"
misc_feature 226965..227195
/locus_tag="Amet_0192"
/note="Chain length determinant protein; Region: Wzz;
cl15801"
/db_xref="CDD:210201"
gene 227335..230301
/locus_tag="Amet_0193"
/db_xref="GeneID:5310236"
CDS 227335..230301
/locus_tag="Amet_0193"
/note="PFAM: TPR repeat-containing protein; O-antigen
polymerase; Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: tte:TTE0644 TPR-repeat-containing proteins"
/codon_start=1
/transl_table=11
/product="O-antigen polymerase"
/protein_id="YP_001318089.1"
/db_xref="GI:150388040"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR007016"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:5310236"
/translation="MLKVLTKGTKGKTKAGVTKQSKRQSVLLFILLGVLVFYPPFFRG
LFFERERLLTHALSFGLFMTYLMDQIIKGEKIDVNSPFDYIGGLLIFAYVLPVVFFQW
ANLREAVGMILWQVNLFVVYFMVKEYAQEEKYRRWILDIVLLSGVITAIVGILGAVGI
VNLADVVLGNRIASTFQYPNTLAALMMALFFIVTGLQSQEENSWKKYFYATSGFLMIF
TFIFTYSRAAWMMLPIFALLYIAFAPGKSRTDGIFYMIAVAVPNILILQPFTSSLSAE
EANLGGIIIVAVGMLVFAVLYMGLEIVKRKLTEKHQRLIYVLLAVIFVAAGGFVYVAL
NITEPLTFDNTTVSENRTNQIQRTIQQVDPLSQYELQLQVESTSIDESQWPWRVQIYG
VDEAGQRQLLEQRIGEINESGEVRIPFDTLERTTDVVLYLRNQHPETKVTFEQVSLYD
NQDNLIKDVKLSYKYLPETLVSRFNAIDLSEGSSTTRFAYYRDSLSIFKEHPLIGAGG
GAWSGIYTKYQSEPYHSTEAHNYYSQTLVETGMVGITLITGLIVLIATLGYYAMKGKN
IVQYSIVMGIIALLGHSAIDFNFSYLSIALILWVLIGLLDVTPLKQLKGLKSLKEREF
KVGGQLSALVITLPLLLVTLSFYSAHQASGQGIYAMETGDHQRGFQLLESAVTRDPFN
ENLRLDYAQVLRGIVTEDGQANFMKEAEEQLLNAEKYAPYKPEVLQRLAGYYLSTGNF
AQAEVYVEKLVQIAPLRESSYEVKANIYSAIGDYYLSESQDELALQMYEKVLEVIEDL
RRTNQELDKPFSLTSEMMSQVFNARYIVENIDSEEKLANLDNIIFSAYLDIHVSEENT
LPQGWWTWNREGGEVKVKVTEEGANVTNVGTDLGILLSPRLELNPSKTYGVDVQISSD
VKDDDIQIVVHSRSGTATQFSQRSLGEPMEGNLYRFTFETTDDIEPGGQDIRFYHYGD
SEQSFTVNQVMIYEIE"
misc_feature 227500..>228129
/locus_tag="Amet_0193"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature 227950..>228159
/locus_tag="Amet_0193"
/note="O-antigen ligase like membrane protein; Region:
O-antigen_lig; pfam13425"
/db_xref="CDD:205603"
misc_feature <228772..228954
/locus_tag="Amet_0193"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
misc_feature 229438..229716
/locus_tag="Amet_0193"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(229459..229461,229471..229473,229480..229482,
229525..229527,229561..229563,229573..229575,
229582..229584,229627..229629,229684..229686,
229696..229698,229705..229707)
/locus_tag="Amet_0193"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 229495..229725
/locus_tag="Amet_0193"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature order(229516..229521,229525..229530,229537..229542,
229618..229623,229630..229635,229642..229647)
/locus_tag="Amet_0193"
/note="binding surface"
/db_xref="CDD:29151"
gene 230434..230949
/locus_tag="Amet_0194"
/db_xref="GeneID:5310237"
CDS 230434..230949
/locus_tag="Amet_0194"
/note="PFAM: regulatory protein, MarR;
KEGG: gme:Gmet_2889 hypothetical protein"
/codon_start=1
/transl_table=11
/product="regulatory protein MarR"
/protein_id="YP_001318090.1"
/db_xref="GI:150388041"
/db_xref="InterPro:IPR000835"
/db_xref="GeneID:5310237"
/translation="MDKEYMVLEEIKENQHISQRQLAHSTGLSLGSVNILLKKMVKEG
LIKVESIPANRVAYMVTPKGIVEKANKTYNYIRQHYKVIEETKKKVKELLLQLMEECK
TVYIQLQEDEISQLVRVAVEELGVSEKVLLVGKEEQDIQPGAILITVNLTNDEFDETR
YEKVINLVEWL"
misc_feature 230446..>230664
/locus_tag="Amet_0194"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature order(230479..230481,230485..230493,230518..230520)
/locus_tag="Amet_0194"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature 230518..230538
/locus_tag="Amet_0194"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature order(230521..230526,230536..230538)
/locus_tag="Amet_0194"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature 230521..230526
/locus_tag="Amet_0194"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene 230975..231376
/locus_tag="Amet_0195"
/db_xref="GeneID:5310238"
CDS 230975..231376
/locus_tag="Amet_0195"
/note="TIGRFAM: nucleotidyltransferase substrate binding
protein, HI0074 family;
PFAM: Nucleotidyltransferase substrate binding protein,
HI0074;
KEGG: tte:TTE1987 hypothetical protein"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase substrate binding
protein"
/protein_id="YP_001318091.1"
/db_xref="GI:150388042"
/db_xref="InterPro:IPR010235"
/db_xref="GeneID:5310238"
/translation="MDHLKNVRWKQRFINFEKSYNLLNQYINQPIETELERAGIIQFF
EISFELSWKLMKDYLESQELSVKSPRETIKQAFQIGLIDDGHIWIDALSDRNLTVHTY
DEKLARKMVDDIAKVYFPELKKLYHKLVKEL"
misc_feature 231005..231367
/locus_tag="Amet_0195"
/note="Nucleotidyltransferase substrate binding protein
like; Region: NTase_sub_bind; pfam08780"
/db_xref="CDD:204062"
gene 231379..231696
/locus_tag="Amet_0196"
/pseudo
/db_xref="GeneID:5310239"
gene 231712..231816
/locus_tag="Amet_0197"
/pseudo
/db_xref="GeneID:5310240"
gene 231835..232173
/locus_tag="Amet_0198"
/db_xref="GeneID:5310241"
CDS 231835..232173
/locus_tag="Amet_0198"
/note="KEGG: tte:TTE1265 type IV pilus assembly protein
PilA"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318092.1"
/db_xref="GI:150388043"
/db_xref="InterPro:IPR000983"
/db_xref="InterPro:IPR012902"
/db_xref="GeneID:5310241"
/translation="MDKKSNGFTLVELIVVIAILGIIVAIAVPRLTGYIRIAEERVCA
ANRKTVEKMYSAFLLENDHEDSIFSQFLIENFDEVCPTGGVLRYEYEKVKCSVHEDGN
EEPGDEVPWL"
gene 232387..233121
/locus_tag="Amet_0199"
/db_xref="GeneID:5310242"
CDS 232387..233121
/locus_tag="Amet_0199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318093.1"
/db_xref="GI:150388044"
/db_xref="GeneID:5310242"
/translation="MNENIIAFILSVLAGLVSGWLVWIFRYVIGNRKHLLITIKAMRL
WNTEIRVSISYLFRIRVSGKYMLVKGNRIDQYQPVGGVFKMLPSFKDIKHNYEITDDD
RLPIDETSKDDLRIRVQGKHLVKLLSWFYTRKNREVGVHREFYEEMIKTGILEIDSLR
SFTPEYCKTVNTNIHYSKHFKCKEILIYEIYELDLTEQEEKRIVEYVRDNSNKAILAS
QDDICKECIDLDGSSKKIGEHAKHIL"
gene 233140..234666
/locus_tag="Amet_0200"
/db_xref="GeneID:5310243"
CDS 233140..234666
/locus_tag="Amet_0200"
/note="KEGG: rde:RD1_A0043 RC169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318094.1"
/db_xref="GI:150388045"
/db_xref="GeneID:5310243"
/translation="MLLFSEIDDYYEQLYKELDIPESYYEKANTSYSSFSNWLGRDDS
TLREHQPQIFLQGSFKLGTVIKPIGENDSYDIDMVCKFNNLSKQEISQKELKTLLGQE
VTTYAKSKGMINEPKNGKRCWTLNYHDEAKFHMDILPCVDDSKKFIDQLEIFKYAETT
SYKERAIAITDKRSEAYNMISNDWEISNPQGYYLWFQEQSNFIEKRAMLAEKFQMKAE
ELKEYKVKTPLQKTIQILKRHRDIMFKDNPEKKPSSIIISTLAAKAYRGGDNIRDVLK
YVVDNMNGYIQEINGEYRILNPVNPLENFADKWNGDQSLKNHFDTWLKEAKKSLTPYN
ESIDIYGDDFQKKISEQLGISEAKSKDLVKADKVMTRVEAIPHRQKPNWNVYSWVDIY
IKATKTKSGFSFPKQFNSGDFLTKNVDLKFEAKAENIKQYEVHWQVTNTGTEAKSSNC
LRGDFYDGQIVEGKRIRKESTSYVGTHIIECYLVKNGVCHGKSKPFIVNIRDGFSMEW
"
misc_feature 233212..233733
/locus_tag="Amet_0200"
/note="Nucleotidyltransferase (NT) domain of
2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I
CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase;
cd05400"
/db_xref="CDD:143390"
misc_feature order(233305..233313,233320..233322,233326..233334,
233362..233364,233368..233370,233491..233496,
233503..233505,233545..233547,233689..233691,
233701..233703,233710..233712)
/locus_tag="Amet_0200"
/note="active site"
/db_xref="CDD:143390"
misc_feature order(233308..233313,233362..233364,233368..233370,
233494..233496,233689..233691,233701..233703,
233710..233712)
/locus_tag="Amet_0200"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143390"
misc_feature order(233362..233364,233368..233370,233545..233547)
/locus_tag="Amet_0200"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143390"
gene 234714..235337
/locus_tag="Amet_0201"
/db_xref="GeneID:5310244"
CDS 234714..235337
/locus_tag="Amet_0201"
/note="PFAM: sugar transferase;
KEGG: bha:BH3716 galactosyltransferase"
/codon_start=1
/transl_table=11
/product="sugar transferase"
/protein_id="YP_001318095.1"
/db_xref="GI:150388046"
/db_xref="InterPro:IPR003362"
/db_xref="GeneID:5310244"
/translation="MVYLKIKRLIDIILSSLGLIILSPVFLVLILAIKVDSPGPVLFK
QKRVGIHKSHFNILKFRTMRIDTPKDTPTHLLDNPDQWITKVGKFLRRTSLDELPQII
NIFKGEMSIIGPRPALWNQYDLIEERDKYGANDVPVGLTGWAQINGRDELEIDVKAKL
DGEYAEKIGFMMDVRCFFGTVISVLRTDGVVEGGTGTKKADKESVRQ"
misc_feature 234732..235271
/locus_tag="Amet_0201"
/note="Bacterial sugar transferase; Region: Bac_transf;
pfam02397"
/db_xref="CDD:202231"
gene 235359..237137
/locus_tag="Amet_0202"
/db_xref="GeneID:5310245"
CDS 235359..237137
/locus_tag="Amet_0202"
/note="PFAM: Heparinase II/III family protein;
KEGG: gme:Gmet_1501 heparinase II/III-like"
/codon_start=1
/transl_table=11
/product="heparinase II/III family protein"
/protein_id="YP_001318096.1"
/db_xref="GI:150388047"
/db_xref="InterPro:IPR012480"
/db_xref="GeneID:5310245"
/translation="MDNKLILFMNTIKYLKPSQGVYRLTNRLKRELYKRKILVINTPS
EIKAIKKAKFLIPSLDFDSEYLNRFDIEGILNNEFDFINISHKVSLDSAWNDKSLQHL
WRYNLHYFEYLYKLGFQYLNGDKNPKYYEKYKELIINWIVNNPCPYGDGWHPYTISLR
ITNWITTYELFIDEINNDIDFRDQIAKSLYTQYSYLQKNLEKDVLGNHYFENIKALII
GSIFFGKEQVKSKFTKELLKQLEEQILEDGMHFELTPMYHKIILEDLIKITVRLKNES
VYAKLSEYIKKMIDVMYSFEEGFGKTPAFNDSTDGISKNYDCLLETCKQEFDLTPKYI
DSFKDSGYYILRNDQYKLILDCGEICPSYLPAHGHCDALSYELSMDGIPILVNSGTYQ
YEGGEWRNHFRKTKAHNTVMIGNREQSQFWGSFRVANRISDVIRRRFNYKGLSFISGA
YKTYFGAKHTRYIGEIDENVLLVLDKVEAKASEEVRSYVHLNPNVKVSLSETVKIKKD
SMNINIIHVSAKDVSISKGWYSSAFNLKEENEHIVFTKSDDLDFFGYLICLKDIKCNA
EISNDVLTIRTDKEFIINLNKLGEKI"
misc_feature 236373..236789
/locus_tag="Amet_0202"
/note="Heparinase II/III-like protein; Region:
Hepar_II_III; pfam07940"
/db_xref="CDD:203812"
gene 237134..238351
/locus_tag="Amet_0203"
/db_xref="GeneID:5310246"
CDS 237134..238351
/locus_tag="Amet_0203"
/note="PFAM: glycosyl transferase, group 1;
KEGG: gme:Gmet_1502 glycosyl transferase, group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001318097.1"
/db_xref="GI:150388048"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:5310246"
/translation="MKIVVICHYFPPEIGAPSARLYEMSKRWVELGNEVHVVTCFPNH
PTGIIPDEYKGMKYKLENMDGIHVHRNYVYATPNKGFIKKTLGHISFMFSSVFYSMKK
IDKPDIIITSSPTFFSIFSGYWYSLRKKADFVLEIRDLWPAAMIELGVMKEGFITRVL
EKMELFFYRKSKKLIMVTQSFKDNVVNRGISGDKVHVITNGVNQDLFYPKEKNQELIN
KHNLEDKFVVSYVGAHGISQNLSTILEVAKKLRIYKNIEFVFVGEGAEKDKLKQILRE
EELKNVQFIDAQPKELIPEFYNLSDLCLIPLKNIELFKTFIPSKMFEIMACGVPIVAS
LEGEAAQILQDSKAAVVVKPDNSDEIAAAIEELINDKEKYNQMKASGPEFVEKNYLRN
KLAERYLEIINNA"
misc_feature 237134..238333
/locus_tag="Amet_0203"
/note="putative glycosyl transferase; Provisional; Region:
PRK10307"
/db_xref="CDD:182369"
misc_feature 237137..238330
/locus_tag="Amet_0203"
/note="This family is most closely related to the GT1
family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It has
been proposed to function as an N-acetyl-L-fucosamine
(L-FucNAc) transferase; Region: GT1_wbuB_like; cd03794"
/db_xref="CDD:99968"
gene 238363..239223
/locus_tag="Amet_0204"
/db_xref="GeneID:5310247"
CDS 238363..239223
/locus_tag="Amet_0204"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase; NmrA family
protein; Male sterility C-terminal domain;
KEGG: pme:NATL1_08611 hypothetical protein"
/codon_start=1
/transl_table=11
/product="3-beta hydroxysteroid dehydrogenase/isomerase"
/protein_id="YP_001318098.1"
/db_xref="GI:150388049"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR008030"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:5310247"
/translation="MILLTGATGFLGGFVLEEMVKRGHKVTCFVRETSNLEKIKELNV
PYIFGKLDDYESICNALKDKETLINIASLGFGHAPHIVNACQEMNINRAIFISTTGIF
TKLNPDSKGIRLEAERLIKESNLDYTIIRPTMIYGTPKDRNMWRLVQYLKKFSVLPIL
GNGTYLQQPVYVKDLAWAVVSAYETDKSIKKAYNISGLKALTYNEVVDVMGRVLGKKI
LKIHVPMKLSYSLLKIYENISSKPKLKAEQVLRLNENKAFSHDEATKDFGYKPISFEK
GIELQVKEVN"
misc_feature 238411..239199
/locus_tag="Amet_0204"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature 238414..239124
/locus_tag="Amet_0204"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(238450..238458,238570..238578,238648..238656,
238693..238695,238756..238767)
/locus_tag="Amet_0204"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(238654..238656,238693..238695)
/locus_tag="Amet_0204"
/note="active site"
/db_xref="CDD:187535"
gene 239288..240424
/locus_tag="Amet_0205"
/db_xref="GeneID:5310248"
CDS 239288..240424
/locus_tag="Amet_0205"
/note="PFAM: glycosyl transferase, group 1;
KEGG: pab:PAB1604 LPS biosynthesis RfbU related protein"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001318099.1"
/db_xref="GI:150388050"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:5310248"
/translation="MNNIKKIFLVVFPHTPNPRMIKRVKALLINYDVHVIYWDRNLGN
KKINELPKESKVTVIKRKANEGSPIKRLGATISVIREIIAIAKRVEPDVLYLSKTDIL
FAAVLYKKITKTNVRLVYEVSDLHTLMVDQQKKTYKKLISKLIKKTEKSLCKSIELLI
VTSEFFYNQFYQDFISKDKVVFMPNTPDPLVFDGFHRKTNEKFTVGFIGAIRYAEQLE
MLIDASIEANINVLIAGAGKDYLRIKEYAKNYENVEVYGEYKYNEEIKKLYEHVDCIY
SVYDAELKNVQIALPNRLYEAAFTSTPIIASKNTYLGDIVEKYDIGKTILFNSKTELI
KVLSLLKEDLNYLKSIEEKSQLFRNDWDLNKHNKNLIKAIGKII"
misc_feature 239378..240253
/locus_tag="Amet_0205"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
misc_feature 239426..240421
/locus_tag="Amet_0205"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene 240436..241665
/locus_tag="Amet_0206"
/db_xref="GeneID:5310249"
CDS 240436..241665
/locus_tag="Amet_0206"
/note="PFAM: UDP-glucose/GDP-mannose dehydrogenase;
UDP-glucose/GDP-mannose dehydrogenase, dimerisation;
UDP-glucose/GDP-mannose dehydrogenase-like;
KEGG: cpf:CPF_0468 UDP-glucose/GDP-mannose dehydrogenase
family"
/codon_start=1
/transl_table=11
/product="UDP-glucose/GDP-mannose dehydrogenase"
/protein_id="YP_001318100.1"
/db_xref="GI:150388051"
/db_xref="InterPro:IPR001732"
/db_xref="InterPro:IPR014026"
/db_xref="InterPro:IPR014027"
/db_xref="GeneID:5310249"
/translation="MTSKINVIGLGYIGLPTALMFAKSGVEVVGTDLNEKLIDSLAKG
KLTFEEEGLEELFNDAIEKGIKFTTEYQKTDTYIIAVPTPYINSSKKLDPKYVISAVN
TVLDVCEKGAVLIIESTISPGSIDKYVRPEIAKRGFELGKDVHLVHAPERIIPGNMIY
ELEYNSRTVGADDLIIGEKVKEIYSSFCKSEIVVTDIRSAEMSKVVENTYRDVNIAFA
NELAKICRTDKMDVYEIIRIANKHPRVNILQPGPGVGGHCISVDPWFLVGDYPDLTNL
ILTARKINDSMPTHVLGRIRDIMREHKITDISKIGIYGLAYKENVDDTRESPTLQLLE
RMDEHLAFGVKVYDPFIKERIVDHQFMNFEDFLNEIKILVIITAHDHIKNNLDLVKDK
FILDTKNICDFDGVYKL"
misc_feature 240442..241632
/locus_tag="Amet_0206"
/note="nucleotide sugar dehydrogenase; Region:
NDP-sugDHase; TIGR03026"
/db_xref="CDD:200234"
misc_feature 241024..241299
/locus_tag="Amet_0206"
/note="UDP-glucose/GDP-mannose dehydrogenase family,
central domain; Region: UDPG_MGDP_dh; pfam00984"
/db_xref="CDD:201536"
misc_feature 241366..241641
/locus_tag="Amet_0206"
/note="UDP-glucose/GDP-mannose dehydrogenase family, UDP
binding domain; Region: UDPG_MGDP_dh_C; pfam03720"
/db_xref="CDD:202739"
gene 241682..242773
/locus_tag="Amet_0207"
/db_xref="GeneID:5310250"
CDS 241682..242773
/locus_tag="Amet_0207"
/EC_number="5.1.3.14"
/note="PFAM: UDP-N-acetylglucosamine 2-epimerase;
KEGG: spn:SP_0357 UDP-N-acetylglucosamine-2-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine 2-epimerase"
/protein_id="YP_001318101.1"
/db_xref="GI:150388052"
/db_xref="InterPro:IPR003331"
/db_xref="GeneID:5310250"
/translation="MKKIMVVFGTRPEAIKMCPLVKELKTREKLNTVVCVTGQHREML
DQVLNAFDVVPDYDLSIMKAKQTLFDVTVNILEKMKAVLEEVRPDVVLVHGDTSTTFV
TALACFYLQIPVGHVEAGLRTYNIYSPYPEEFNRQAVGIVSNFNFAPTEMSKENLLKE
GKDLETIHVTGNTAIDALKTTVRGDYSHEHLRWAADSRLIMITAHRRENLGEPMRNMF
RAIKRIIDETADIKAIYPIHMNPIVRKAAQEILGDTDRIRIIEPLEVLDFHNFLSRSH
LILTDSGGIQEEAPSLGKPVLVMRDTTERPEGIAAGTLKLVGTDEEVIYKTFKQLLEN
QNEYDKMSQASNPYGDGFASKRIADILCR"
misc_feature 241688..242764
/locus_tag="Amet_0207"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature 241688..242764
/locus_tag="Amet_0207"
/note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB;
TIGR00236"
/db_xref="CDD:188036"
misc_feature order(241712..241714,242468..242470,242474..242476,
242483..242485,242531..242533,242543..242545)
/locus_tag="Amet_0207"
/note="active site"
/db_xref="CDD:99962"
misc_feature order(241889..241891,241895..241900,241919..241921,
242003..242008,242012..242014,242018..242020,
242075..242077,242087..242089,242156..242158)
/locus_tag="Amet_0207"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 242913..243170
/locus_tag="Amet_0208"
/db_xref="GeneID:5310251"
CDS 242913..243170
/locus_tag="Amet_0208"
/note="KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose
dehydrogenase"
/codon_start=1
/transl_table=11
/product="UDP-glucose/GDP-mannose dehydrogenase"
/protein_id="YP_001318102.1"
/db_xref="GI:150388053"
/db_xref="GeneID:5310251"
/translation="MVIGLGYVGMPLVVAFAKKIDVISFDLNKKKIELYKAGIDPTNE
VGDEGIKQTSVEFTANEARLKEAKFHIWNIIAESYNALYKS"
misc_feature 242916..>243125
/locus_tag="Amet_0208"
/note="Vi polysaccharide biosynthesis protein TviB;
Provisional; Region: PRK15182"
/db_xref="CDD:185104"
gene 243195..244343
/locus_tag="Amet_0209"
/db_xref="GeneID:5310252"
CDS 243195..244343
/locus_tag="Amet_0209"
/note="PFAM: glycosyl transferase, group 1;
KEGG: pac:PPA0673 putative glycosyl transferase group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001318103.1"
/db_xref="GI:150388054"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:5310252"
/translation="MYILIIARGYPTDKYKMNGIFEFDQAKALVQAGHKVIYAAIDVR
SIRRWRKWGGESFEQDGVQVEAINIPGGRIPKTILRQIQMQGLKNLYKRIESKYGKPD
IIHAHFLGYGNISTEVLAKQNIPIALTEHLSAMNNKALEPSLITLGTETYPNVDKLIT
VSEALANNIEEKFEVKATVIPNMVDTESFNYINRRKENDDYVFVSTGGLIPRKSMDVL
IDSFNIAFKDKKKVKLYIFGEGAERSKLEQMIAEYKLTEQIFLMGLRDRKEIAKRMHE
SDCFVLVSKLETFGVAYIEALAAGLPVIATNCGGPEEFVHKDNGILIEVDDAEALTNS
MLKMYNESNKFDREKISKEMVDKFSPEAIAKRLTETYRNVLKDRKVQL"
misc_feature 243201..244316
/locus_tag="Amet_0209"
/note="This family is most closely related to the GT1
family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to the
B. pertussis lipopolysaccharide (LPS) core; Region:
GT1_wlbH_like; cd03798"
/db_xref="CDD:99971"
misc_feature 243291..244328
/locus_tag="Amet_0209"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene 244340..245611
/locus_tag="Amet_0210"
/db_xref="GeneID:5310253"
CDS 244340..245611
/locus_tag="Amet_0210"
/note="PFAM: O-antigen polymerase;
KEGG: bsu:BG12692 biosynthesis of teichuronic acid,
polymerization"
/codon_start=1
/transl_table=11
/product="O-antigen polymerase"
/protein_id="YP_001318104.1"
/db_xref="GI:150388055"
/db_xref="InterPro:IPR001345"
/db_xref="InterPro:IPR007016"
/db_xref="GeneID:5310253"
/translation="MKKSVLLIVASSLMAADFISISLGFMELSLFRISLMLLAILTIF
NYLKSNKKFALNNLSIQSKIIRFYLLWLFYAILSLGWVKDYDYWIRAVFYITVGFLCI
WTFSVYLKEKKDFSKVFLVFFIMLVIHNLIGLNEVSTGVYRFADMTRIDRHGQFGYNA
VARTPVSMFGNTNDFATVITLGIFITYIVFVNTNSKILKSISIFNLISSIYLLVRTDS
RANMLGLAIGILVFTYLNFYRKLTVKTILLMFGVPLLIFNPFVLNQILTFVSDRLNFN
FAGTGSDGIRVGLIKNGLLFLKETIGFGVGAGNIDFWMENYKVYYTGTIRNMHNWWME
ILVGYGVFIFMGYIWTYLKMFKIFYKAYIKSDDKFIRTTSLGLISLMSAFIVSAISSS
SNVGSSWMWMIWGVVIAFVGYVENKRKQISY"
misc_feature 244346..245440
/locus_tag="Amet_0210"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature 244949..245383
/locus_tag="Amet_0210"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:203125"
gene 245637..246746
/locus_tag="Amet_0211"
/db_xref="GeneID:5310254"
CDS 245637..246746
/locus_tag="Amet_0211"
/note="KEGG: bad:BAD_1383 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318105.1"
/db_xref="GI:150388056"
/db_xref="GeneID:5310254"
/translation="MDINNKQNIATIAFHRAINYGAVLQVYALQKRIEELGGNCTVLD
YRNDLLESKHRETKIGDCKTIKDYIRFIFLSKNNNLKYKAFRAFSESYLNLSKPYYTI
DELKKDEQKYDKFITGSDQVWNGNLSNTDPAYFLDFVNDSRKKNSYAASFGFEKIPDN
KIGDYYNMLKGYKEMSVREIQGTKIIKELLGMDVETVLDPTLLLTKEKWFEIAEDYTK
NENYILVYGFGEAKYKMNFAKNLSKKTGCKIVHIANPYYNERGILYEKSLGPKEFLGI
LKNAQYIVTNSFHGTAFAINFNKEFFVEPLSEAFGTNSRLTNILDLFGLKDRLIFSED
VSMYDKTIDYDNVNKVLNGERKNSVKFIREIINSN"
misc_feature 245691..246545
/locus_tag="Amet_0211"
/note="Polysaccharide pyruvyl transferase; Region:
PS_pyruv_trans; pfam04230"
/db_xref="CDD:202937"
gene 246845..248014
/locus_tag="Amet_0212"
/db_xref="GeneID:5310255"
CDS 246845..248014
/locus_tag="Amet_0212"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein;
KEGG: dps:DPPB80 related to F420H2-dehydrogenase, beta
subunit"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_001318106.1"
/db_xref="GI:150388057"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:5310255"
/translation="MISVFDIKEDCCGCTSCQHICPTKAIEMKPDEEGFLYPEINQEL
CNDCGLCRTVCAFQNGYDISDDFAAPKVYAVKNKHEDVRMASSSGGIFSAISDHILDS
DGLVSGVAFDENMNVVHKIAATKEERDEFRGSKYVQSELNHVYSEIKNLLKQNKAVLF
TGTPCQNAGLKSFLDLARVKTENLILCDIVCHGTPSPLLWKEHVSFLENKNEGKLLQH
SFRWKEAGWRGYNVYAAFDNGKSKLNTADVKSFANIFSSDAALRPSCHYCRYANLKRP
SDITIADFWGIEKTMPQFDDNKGISLTLINTAKGQKLFEDIKSKIIYRESNTKDCLQR
NLQESSKVSEKREQFWQDYHLRGYEYIVKKYAGYNLKASIKRKVKTALIKMGLQA"
misc_feature 246875..247018
/locus_tag="Amet_0212"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
misc_feature 247310..247804
/locus_tag="Amet_0212"
/note="Coenzyme F420 hydrogenase/dehydrogenase, beta
subunit C terminus; Region: FrhB_FdhB_C; pfam04432"
/db_xref="CDD:190987"
gene 248199..248771
/locus_tag="Amet_0213"
/db_xref="GeneID:5310256"
CDS 248199..248771
/locus_tag="Amet_0213"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318107.1"
/db_xref="GI:150388058"
/db_xref="GeneID:5310256"
/translation="MLVYGIKAPKSAERIWINPRDCKYLIKDIGRKGSGKVVKEWPPR
GAHIVNVDEIEKIKYLKLHWEDGVPWSDCGIYEYNYRLIERGVFDDGCKNKEDVILKY
KKLDNVFEKIKKENKLLTRAELDEKAFRENGGVYIHLGPNGEPYFGGAGYHRFAIALV
LGIPLIPAQIGFVHISALGKLKDYRCNNSD"
gene 248847..250412
/locus_tag="Amet_0214"
/db_xref="GeneID:5310257"
CDS 248847..250412
/locus_tag="Amet_0214"
/note="TIGRFAM: integral membrane protein MviN;
PFAM: multi antimicrobial extrusion protein MatE;
polysaccharide biosynthesis protein; virulence factor MVIN
family protein;
KEGG: tte:TTE0176 uncharacterized membrane protein,
putative virulence factor"
/codon_start=1
/transl_table=11
/product="integral membrane protein MviN"
/protein_id="YP_001318108.1"
/db_xref="GI:150388059"
/db_xref="InterPro:IPR002528"
/db_xref="InterPro:IPR002797"
/db_xref="InterPro:IPR004268"
/db_xref="GeneID:5310257"
/translation="MTQSQKAVQSVLIIMFFTLASKVLGFIREILIAAKFGSGVETDT
FFIALTATTLFTTFFTQSINTTMIPILSEVERKEGILGKRSHTNNLLNIVMVISFFLV
IVAWFLAPLIIRILAHGFEGEQFNQTVLLMRIGLPVFFFASAVGIFRGYLQSEMKFTE
SAIAQFPFNFVYIFFLVFLADLLGIKGLMVASVLAVGAQILIQIPGLRKINFQYQFIF
DVKDYYVKKILHLVPPVLISVAVSDINKIVDRSLASTLIDGSVSALNYSNRLKGLIIG
IFTAAIVTVLFPLLSQKADKNNHDEFKSVFRYGVNTILLITVPATVGMIVLAEPIVRL
SFERGAFDATASYMTAGALIFYSIGIVGMGLKSFLNRAYYALQDTKTPMYNGFIAIGV
NIVLNFILVQFMAHRGLALATSISAILSSLLLLYGLKRKIGPLGIKNMLTTGIKVLAS
SLIMGFATLHVYRYLSFSFTGSTLIDLIVLSVSIGFGALVYLLLIYLMKVKELFWFIN
LFKKKLSRKKKSR"
misc_feature 248868..250358
/locus_tag="Amet_0214"
/note="integral membrane protein MviN; Region: mviN;
TIGR01695"
/db_xref="CDD:162493"
misc_feature 249546..250043
/locus_tag="Amet_0214"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
gene 250607..251038
/locus_tag="Amet_0215"
/db_xref="GeneID:5310258"
CDS 250607..251038
/locus_tag="Amet_0215"
/note="KEGG: bfs:BF2224 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318109.1"
/db_xref="GI:150388060"
/db_xref="GeneID:5310258"
/translation="MEKSIERFKKGAKYVNIESAVRRDHLTSINDTSDDYLNLKCVKF
IPASGAATRMFEDLYKYLDDKIATESINQFFDELENITFYEEIKDFIEKENIDKNVTS
DRIKIIDYILNSNKMNYGNLPKAVIKMNSYKDFSTTPIEDA"
misc_feature 250607..>251029
/locus_tag="Amet_0215"
/note="Domain of unknown function (DUF4301); Region:
DUF4301; pfam14134"
/db_xref="CDD:206303"
gene 251357..252193
/locus_tag="Amet_0216"
/db_xref="GeneID:5310259"
CDS 251357..252193
/locus_tag="Amet_0216"
/note="PFAM: protein of unknown function DUF1568;
KEGG: swo:Swol_0164 transposase and inactivated
derivatives-like protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318110.1"
/db_xref="GI:150388061"
/db_xref="InterPro:IPR011462"
/db_xref="GeneID:5310259"
/translation="MGRKPRVEYRGGVYHVIQRGNNREYIFEKKEDKAYLLELVAEYK
VVMNFELYGFVLMDNHYHMVLKTLDAPLQDIMHRINNKYSKYYNYQNKRTGHVFENRY
KGILVKDEKYLLSLIRYVHQNLVRAKMCEKVKDYQWSSDPYYRKNRQGEMVDIGFILN
MFSRDRQEAIKEYKRFMDRDKMEEGSTFEEVLIIGENQETTMSKPVEVIQRKSLDEIL
YEVTKDEAIHDEIKKGSRKRNLTVYKQKYISRSLAANYTMREIGENISVSEVAVYKMH
CK"
misc_feature 251357..251773
/locus_tag="Amet_0216"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG1943"
/db_xref="CDD:32126"
gene 252280..253194
/locus_tag="Amet_0217"
/db_xref="GeneID:5310260"
CDS 252280..253194
/locus_tag="Amet_0217"
/note="TIGRFAM: cell envelope-related function
transcriptional attenuator, LytR/CpsA family;
PFAM: cell envelope-related transcriptional attenuator;
KEGG: tte:TTE0736 transcriptional regulator"
/codon_start=1
/transl_table=11
/product="cell envelope-related transcriptional
attenuator"
/protein_id="YP_001318111.1"
/db_xref="GI:150388062"
/db_xref="InterPro:IPR004474"
/db_xref="GeneID:5310260"
/translation="MNKNRKNLIALISIVSILLIIGSVGFQKYQNIVDPHQAFEKNLQ
QEKDNREKEGMDENRNVVKILLLGVDSSEVREGRAMGYRSDAIMIASMDLDAKNVKLV
SIPRDSYTDVPGNDNKDKINHAMAFGGGPRNKGNQYAVEAVEGLLDINIDYYLTMDLD
AVKDIVDTIGGVTVDVERSMDSGGIRIEKGEQKLDGQQVLAYLSNRNAPTGDFARIEQ
QQKFMKALFQQTKEKGKFSDVLPLYLKMQSKIFTNLEIDQMGALLLFLKSVQSENIEL
FTLRGEGMIIDGIYYIDIDEDYMKEIFS"
misc_feature 252526..252972
/locus_tag="Amet_0217"
/note="Cell envelope-related transcriptional attenuator
domain; Region: LytR_cpsA_psr; pfam03816"
/db_xref="CDD:202777"
gene 253695..254633
/locus_tag="Amet_0218"
/db_xref="GeneID:5310261"
CDS 253695..254633
/locus_tag="Amet_0218"
/note="KEGG: dsy:DSY2001 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318112.1"
/db_xref="GI:150388063"
/db_xref="InterPro:IPR010106"
/db_xref="GeneID:5310261"
/translation="MGIIHQPHDKFFKEMFGNLALAKDFMTNYLPLELLKIVDIETLT
PEKEHYIEDDLKESFSDLLFKANINGREGYLYFLFEHKSYPSKRIAIQLLHYMVRIWD
DKSLKEKKEKIPMIIPMTVYHGKENWNVALRLSDLMEGYEELPEEIRKYIPEYEYLIY
DLSGYTDDEVKGDVQLQIVIKILRSIFRNDEEFFKVFKEAVEVLDKLEKQEKGIEYFK
TFIYYILSARKGVTLTEIYDLVKEVSVERSDEIMTIAEELLKEGMEKGMEKGMEKGKL
EEKREVARNLIGLGVELDKVMKATGLSEEEINKLLN"
misc_feature 253710..254264
/locus_tag="Amet_0218"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:203082"
misc_feature 253713..254615
/locus_tag="Amet_0218"
/note="putative transposase; Provisional; Region:
PRK09857"
/db_xref="CDD:182117"
gene 254937..255203
/locus_tag="Amet_0219"
/db_xref="GeneID:5310262"
CDS 254937..255203
/locus_tag="Amet_0219"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318113.1"
/db_xref="GI:150388064"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:5310262"
/translation="MSLIVETGDFVNVEIYIEMPESYSNLTEQEKITILYMKDNDGKV
TTKEVMKILDIKDRRGRKILKDMVDKRLINVRGQGRSTYYVLKH"
misc_feature 255012..255194
/locus_tag="Amet_0219"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 255586..257124
/locus_tag="Amet_0220"
/db_xref="GeneID:5310263"
CDS 255586..257124
/locus_tag="Amet_0220"
/note="TIGRFAM: Mg chelatase, subunit ChlI;
PFAM: magnesium chelatase, ChlI subunit; ATPase associated
with various cellular activities, AAA_5;
KEGG: tte:TTE1455 predicted ATPase with chaperone
activity"
/codon_start=1
/transl_table=11
/product="Mg chelatase subunit ChlI"
/protein_id="YP_001318114.1"
/db_xref="GI:150388065"
/db_xref="InterPro:IPR000523"
/db_xref="InterPro:IPR001208"
/db_xref="InterPro:IPR004482"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:5310263"
/translation="MASVVKGFSLLGVDGYVVEVETKTIDSQPMISIVGLGDTAIKEA
KERLEAVLNHGDYHFPKMKIVINLAPSDLKKAGTHFDLAMAVGLLMESGQIRPKEIQK
YGFIGELSLNAKLRSCVGVLPMVMAAKESGIKNIIVSKENIQEASLVQGMNIFGFSAL
KEVADFLEGKKEYEIPLELTPKHQEQHLYGLDFNEVQGQDAMIEYIVVAAAGGHNLLM
IGAPGCGKSMIAKRIPTVLPSMMEAESLEVTKIYSVAGLLRKRGYLIEDRPFRAPHHN
ASTNSLIGGGNNALPGEISLSHNGVLFLDEIAEFNKKTLEALRQPMEDRRVTISRVRY
TNTYPANFMLVAAMNPCPCGHYGSDRCQCSDYEVIKYRQKISGPILDRMDIQKYVQPV
DFLQLSEHTSGRSSAELRERVEFARDIQKTRYASMEAINCNAQMTPSLIKEYCELEAD
GTKLLRLAYDRFQYSARTFHKFLKVGRTFADMEGSEKIRKKDIAAALMARDLDKEQAG
MLVL"
misc_feature 255625..257100
/locus_tag="Amet_0220"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature 255643..256011
/locus_tag="Amet_0220"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 256177..>256584
/locus_tag="Amet_0220"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 256243..256266
/locus_tag="Amet_0220"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(256246..256269,256498..256500)
/locus_tag="Amet_0220"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 256486..256503
/locus_tag="Amet_0220"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 256789..257085
/locus_tag="Amet_0220"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene 257136..258272
/locus_tag="Amet_0221"
/db_xref="GeneID:5310264"
CDS 257136..258272
/locus_tag="Amet_0221"
/note="TIGRFAM: DNA protecting protein DprA;
PFAM: SMF family protein;
KEGG: cth:Cthe_0459 DNA protecting protein DprA"
/codon_start=1
/transl_table=11
/product="DNA protecting protein DprA"
/protein_id="YP_001318115.1"
/db_xref="GI:150388066"
/db_xref="InterPro:IPR003488"
/db_xref="GeneID:5310264"
/translation="MLYWIWLSEVKGIGPVMQKRLLAYLQSPKAIYTASSEELMNVPG
IGCHLAEEITTSSLKRAQEILGMCNGLNIQLLTFHDERYPSRAKEYPLCPILLYYRGH
LVENSIGVGIVGARRCSSYGKEIAKQAGQYLAQNNIPVISGMAKGIDGYAHISCLKAG
GYTLAFLGSGVDICYPKEHDELMARIMESGAVLSQYPPETKPKPQYFPKRNALISAWS
EKILVVEAGAKSGALITAQYTKQLKREVLAVPNQIYSQMGKGTNQLIKEGATIYLGPE
QLINTEPVMNVEAKIIGDNGLKPVKGNKKRKAMEAMKIASPQVNTPTEQRVIDALFGT
PKTMAQIVEETKLQQLVLLEVMTILELEGKISSLPGGKWVKEVI"
misc_feature 257334..257948
/locus_tag="Amet_0221"
/note="DNA recombination-mediator protein A; Region:
DNA_processg_A; pfam02481"
/db_xref="CDD:145559"
misc_feature 257349..257978
/locus_tag="Amet_0221"
/note="Possible lysine decarboxylase; Region:
Lysine_decarbox; cl00695"
/db_xref="CDD:207171"
gene 258377..259870
/locus_tag="Amet_0222"
/db_xref="GeneID:5310265"
CDS 258377..259870
/locus_tag="Amet_0222"
/note="PFAM: AAA-4 family protein;
KEGG: mbu:Mbur_0507 divergent AAA ATPase"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_001318116.1"
/db_xref="GI:150388067"
/db_xref="InterPro:IPR007421"
/db_xref="GeneID:5310265"
/translation="MKIEKLKEIISGGENITVEFKESKNKLNKDVYESVCAFLNRYGG
HLFLGVKDNGDITGVDKDSVEQLKKNFVTSLNNPQMLNPTFYLNIEDVEVEGNVILYI
NIPESSQVHRCKGKIFDRNEDGDFNITDNTTLVSKLYMRKQSTYTENKIFPYAEMEEL
ESEVFTKVRKLAANQKANHPWTSMDDLEILKSVGLYLRDPNTGKQGITLGGILIFGKE
ESIHAALPHHRTDAILRRENLDRYDDRDDIRVNLIRSYERLMQFIAKHLNDKFYLEGD
QRVSLRDKIFREAISNLLIHREFSNPFPAKLVIEMNRVYIENSNKPHGNGIIDPENFS
PYPKNPTIAKFFKEIGWVDELGSGVRNIYKYNKIYSGADPEFIEGDIFKTIIPFKPLA
STHVNMDSSTHVSTHVSTHVNNTNEDEKIKALLEFCQEPRSRSEIQDFLRLKSRKHTL
SKFINPLVRGGLLKLTIPDKPRSPKQKYYCENRWKEQRTQGARHLTY"
misc_feature 258377..259789
/locus_tag="Amet_0222"
/note="Predicted transcriptional regulator containing an
HTH domain and an uncharacterized domain shared with the
mammalian protein Schlafen [Transcription]; Region:
COG2865"
/db_xref="CDD:32692"
misc_feature 258416..258751
/locus_tag="Amet_0222"
/note="Divergent AAA domain; Region: AAA_4; pfam04326"
/db_xref="CDD:202973"
misc_feature 259301..259534
/locus_tag="Amet_0222"
/note="ATP-dependent DNA helicase recG C-terminal; Region:
HATPase_c_4; pfam13749"
/db_xref="CDD:205923"
gene 259919..260167
/locus_tag="Amet_0223"
/db_xref="GeneID:5310266"
CDS 259919..260167
/locus_tag="Amet_0223"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318117.1"
/db_xref="GI:150388068"
/db_xref="GeneID:5310266"
/translation="MKALFQQTKEKGKFSDVLPLYFKMQSKIFTNLEIDQTGALLLFL
KSVQSENIELFTLRGEGMIIDGIYYIDIDEDYMKEIFR"
gene 260697..263663
/locus_tag="Amet_0224"
/db_xref="GeneID:5310267"
CDS 260697..263663
/locus_tag="Amet_0224"
/note="KEGG: stm:STM4489 putative DNA helicases"
/codon_start=1
/transl_table=11
/product="putative DNA helicase"
/protein_id="YP_001318118.1"
/db_xref="GI:150388069"
/db_xref="GeneID:5310267"
/translation="MNYKTEAITKYLRSAVAAQANMGIDFKKDEFHIIDKEDLIQGKI
GLEVCQSIFAEASKSAFENENESNEKSFIKVIICAKAIKTIFEANEKTQDEIDELTGI
FYIPVILDQQGMLSYNQIDKKIPWFPREYLHPMVEPKLAIGNAETVDDYISNHVDQIE
KIKSWSDYTAFFKTFYESIAESKFEEKTIRNMEDQASALELENNMYVFIDKTVHSTFH
IMRLYNHLMKEDQPKPLYDNFISTEIANINPLVENDIARMQVHSGQMGGEYSLSPSQR
EAVNHFNCMEDGEILAVNGPPGTGKTTLLQSIVADMYVKRALNQEKAPLVVASSTNNQ
AVTNIIASFGNIKKMGISNLEERWIEGVDSFAAYFPSGSKIKEAKSQGYQYTNQKGEF
FFSDVEDKGNIEKSEGKLIESCNEYFKTQYKDINACKNRLHEELLFFEKSKNTLLSLA
QEAAQYDLNGQTLDQYLIGLQDEMKVKQEVVSTIGQRVKDWEDCYNRMPFFCKLLKFI
KPFSRKIQTAFRLFMNNEEQGFINEYMSLDEIKEKYSQQYAVYNKGTYDLRKKKDSVE
KIKSRYDKELKELERHHIFFYEKEEEKYRLEMDFINDVLDKKIRYITFWLAVHYYECR
WVSGEDKLSKKQKGRNFKNVLDQFYSRLSMITPCLVMTFYMLPRQFLAYGDQKNFFLY
NYIDLLIVDEAGQVSPEIAAGAFSLAKKAIVVGDIYQIEPIWAINPGLDKALAWSHGV
VESLGEFELLEKAGLNTSRSSVMKVAAKCCKYEKFDERGLFLREHRRCYDEIINYSNK
LVYKGNLQPMRGKGSQDQKLAIKEWPQMGFRQVDTDVSYRKGNSRCNQREAEKIVAWL
KGNVNLIEEVYSQEPVENLVGVITPFRAQVGCIKKELKKQMPRYATKISIGTVHTFQG
AERRIIILSTVYGRHDGCFFIDENESLMNVAVSRAKDNFFVFGDINCLKDTQNSASGL
LKKAIGSNAVPTVATQ"
misc_feature 261507..>261716
/locus_tag="Amet_0224"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 261558..>261806
/locus_tag="Amet_0224"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature 261579..261602
/locus_tag="Amet_0224"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature 261585..261605
/locus_tag="Amet_0224"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature 261645..261647
/locus_tag="Amet_0224"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature 261663..261671
/locus_tag="Amet_0224"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature <261813..263570
/locus_tag="Amet_0224"
/note="Superfamily I DNA and RNA helicases and helicase
subunits [DNA replication, recombination, and repair];
Region: COG1112"
/db_xref="CDD:31309"
misc_feature <262752..>262934
/locus_tag="Amet_0224"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 263010..263576
/locus_tag="Amet_0224"
/note="Family description; Region: UvrD_C_2; cl15862"
/db_xref="CDD:210262"
gene 263768..265660
/locus_tag="Amet_0225"
/db_xref="GeneID:5310268"
CDS 263768..265660
/locus_tag="Amet_0225"
/note="TIGRFAM: PAS sensor protein;
PFAM: sigma-54 factor, interaction domain-containing
protein; Propionate catabolism activator domain protein;
ATPase associated with various cellular activities, AAA_5;
PAS fold domain protein;
SMART: PAS domain containing protein; AAA ATPase;
KEGG: chy:CHY_1254 sigma-54 dependent transcriptional
regulator"
/codon_start=1
/transl_table=11
/product="putative PAS/PAC sensor protein"
/protein_id="YP_001318119.1"
/db_xref="GI:150388070"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR010524"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013767"
/db_xref="GeneID:5310268"
/translation="MKKDILFISPFEDLYKIAKKLIKFQGFEEIDVQMGDLEEGAKKA
RVAVNNGTRVIISRGGTYNAILKEVDVPVVEVGITAFDILKSFKLIQQIKEPLAIIGY
HNVIKGYDIIEDLFVDMDVTKIILDNTKSVEGQIKECVNKGVKVVVGDTVVNRIAPQY
GCKSILIESGEEAVLSAMNEAIRVLKAAQVESDRMQRFMAVIDYTSDGVIATDKDGRV
TVFNRNAEVILGTTKEKAKGQLISQIFKYDQISKLIESPSIKVDSIYDLGSTKLALNH
VPIFVDGDDTGSIITFQDISKIQSLEKKIRLELSKKGFVAKYNFQDIVHQSSLMQKCI
KRARTYGGYDSSVLITGPSGVGKEIFAQSIHNISKRKTGPFVPINCAALPANLIESEL
FGYVEGAFTGAKKGGKPGIFEMAHKGTIFLDEISELPLDLQARLLRVIQEREVMRVGD
NKVIPVDVRIICATNRDLKEMVIEGDFRRDLLFRINILSLNIPSLNERREDIELLIEY
FISLFCDEYKKGSMKISSDTLGYLERHHYDGNVRELQGMIERAVITCTGDEIKLDDII
ESDAYNVDQIISNHSNIFDEEYSLKELEDKYIKYISNKYSDSKQEICHILGIDRSTLW
RKKKKK"
misc_feature 263825..264334
/locus_tag="Amet_0225"
/note="Propionate catabolism activator; Region: PrpR_N;
pfam06506"
/db_xref="CDD:148236"
misc_feature 264347..264682
/locus_tag="Amet_0225"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature 264380..>264535
/locus_tag="Amet_0225"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(264428..264430,264440..264442,264458..264460,
264497..264508)
/locus_tag="Amet_0225"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(264488..264490,264500..264502,264524..264526,
264533..264535)
/locus_tag="Amet_0225"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 264773..265228
/locus_tag="Amet_0225"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 264803..265219
/locus_tag="Amet_0225"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature 264818..264841
/locus_tag="Amet_0225"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(264821..264844,265034..265036,265160..265162)
/locus_tag="Amet_0225"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 265022..265039
/locus_tag="Amet_0225"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 265217..265219
/locus_tag="Amet_0225"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 265925..267202
/locus_tag="Amet_0226"
/db_xref="GeneID:5310269"
CDS 265925..267202
/locus_tag="Amet_0226"
/note="PFAM: type III effector Hrp-dependent outers;
KEGG: mta:Moth_0726 type III effector Hrp-dependent
outers"
/codon_start=1
/transl_table=11
/product="Hrp-dependent type III effector protein"
/protein_id="YP_001318120.1"
/db_xref="GI:150388071"
/db_xref="InterPro:IPR010737"
/db_xref="GeneID:5310269"
/translation="MIYIISDDLTGANDTGIQYTKQGFRTLVTVKTDVEFLETTSKSY
DVISINVDTRSKLPDDAYHTVYDLVKKFENTGVDYIYKKIDSIVRGNPGVELDAVMDA
SNAKIALVATSFPEVGRKLMNGKLELIDWEGNKSVIDVIELFTDDMKRKVRGINLSTV
KEGISSIVEVVERGTSEGVEVFVIDAESDEDLAVIKGAATSLKVPPVLCGSAGLAKQL
SLSGREIFNKKSNEVTQIEDKATLILIGSRNNITSQQLKVLEEEMRIPVLTLMTGEVL
NGGREAIIENTRGEVSSLIDNGCRLLAIVVDTLFQGFTVQLKDSEAALMDSNYIAHAI
GELAKLIYETNSIDTIVSSGGDTSQKLLDALNAKGIHLESEILSGIPVGRVIDGIADG
MTIVTKSGGFGDQDSLIKVIEYLEDRKNKLAYA"
misc_feature 265925..267172
/locus_tag="Amet_0226"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3395"
/db_xref="CDD:33202"
gene 267254..268414
/locus_tag="Amet_0227"
/db_xref="GeneID:5310270"
CDS 267254..268414
/locus_tag="Amet_0227"
/note="PFAM: iron-containing alcohol dehydrogenase;
3-dehydroquinate synthase;
KEGG: msu:MS0069 EutG protein"
/codon_start=1
/transl_table=11
/product="iron-containing alcohol dehydrogenase"
/protein_id="YP_001318121.1"
/db_xref="GI:150388072"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR001670"
/db_xref="InterPro:IPR002658"
/db_xref="GeneID:5310270"
/translation="MMMEQYQLVMPKFVYSGTNSLEKIADIITREKAKKVMVFTGKEI
LKIGICDKVFEVIRECGADYDVISDIRPEPGTVDVEKVLKQLNQSDGELVVAVGGGSV
MDMAKLCAAMKGASYTIHQLLEDNSIMENGLPTVMVPTTCGTGSESTFNSIVAVESKQ
LKVGIVNTNMMADYVILDSSMIAGLPKHIVASTGVDALAHAVECFTSNRANPFSDLVA
KEASKLIFENIVKSYHEPGNMEAKTNMLRAAFLAGVAIASSGTTAVHALSYPLGGKYH
IPHGISNAILLAPVMRYNMAACEERLAILADTVSPGGIARSNKEKAEEIVKRIEEIVR
DTHIPSSLSEYNVGKEDLDQLVASAFEVKRLLNNNRKELTKEDIKNIYLEIL"
misc_feature 267275..268399
/locus_tag="Amet_0227"
/note="5-hydroxyvalerate dehydrogenase (HVD) catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+
as cofactor; Region: HVD; cd08193"
/db_xref="CDD:173952"
misc_feature 267284..268387
/locus_tag="Amet_0227"
/note="Iron-containing alcohol dehydrogenase; Region:
Fe-ADH; pfam00465"
/db_xref="CDD:201245"
misc_feature order(267374..267376,267548..267556,267563..267565,
267572..267574,267671..267676,267680..267682,
267737..267742,267794..267796,267818..267820,
267839..267841,267851..267853,268046..268048,
268058..268060,268088..268090)
/locus_tag="Amet_0227"
/note="putative active site [active]"
/db_xref="CDD:173952"
misc_feature order(267839..267841,267851..267853,268046..268048,
268088..268090)
/locus_tag="Amet_0227"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173952"
gene 268426..269466
/locus_tag="Amet_0228"
/db_xref="GeneID:5310271"
CDS 268426..269466
/locus_tag="Amet_0228"
/EC_number="1.1.1.262"
/note="TIGRFAM: 4-hydroxythreonine-4-phosphate
dehydrogenase;
PFAM: Pyridoxal phosphate biosynthetic protein PdxA;
KEGG: mta:Moth_0727 4-hydroxythreonine-4-phosphate
dehydrogenase"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="YP_001318122.1"
/db_xref="GI:150388073"
/db_xref="InterPro:IPR005255"
/db_xref="GeneID:5310271"
/translation="MNKLPILGITMGDPCGIGPEITAKALVHKNVYEVCRPIVVGSAK
VLEAAIAICNKDLKVNVVSNVKEAKFAFGTIDVFDQDHVDVWSLVRGQVSKIGGQGAY
EAIEKVIDLAMKGEIDGTITGPLNKEALNIAGYHYGGHTEIYAKLTGTKDYSMMLADG
NLRVVHVSTHVSLREACDRCTKERVGSVIKLAEEACKSLGINRPRIAVAGLNPHSGEN
GLFGREEIDEIIPAIEKAKSEGLDVEGPEPPDTLFSKALGGQYDIVVAMYHDQGHIPV
KVVGFQYNHELKRWNTVSGVNITLGLPIIRSSVDHGTAFGQAGKGTANEESLVNAIDY
GARLAVTRLENK"
misc_feature 268426..269457
/locus_tag="Amet_0228"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed; Region: pdxA; PRK00232"
/db_xref="CDD:178940"
misc_feature 268426..269442
/locus_tag="Amet_0228"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene 269498..270385
/locus_tag="Amet_0229"
/db_xref="GeneID:5310272"
CDS 269498..270385
/locus_tag="Amet_0229"
/EC_number="4.2.1.52"
/note="TIGRFAM: dihydrodipicolinate synthase;
PFAM: dihydrodipicolinate synthetase;
KEGG: msu:MS0067 DapA protein"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_001318123.1"
/db_xref="GI:150388074"
/db_xref="InterPro:IPR002220"
/db_xref="InterPro:IPR005263"
/db_xref="GeneID:5310272"
/translation="MVNIHGIVPAMVTPMNEDETINEKELRAQVNRQIEAGVHGLFCL
GTNGEFYILNQEEKLKVMEIVIHENAGRLPVFVGTGAIGTKETVQLSQKAQELGADVL
SVITPYFAAASQNEIYEHFKTVANSVDIPILPYNIPMRTGANINVDTLKRLSQIPNIT
GVKDSSGNFDNILQYIESTDDSFAVLSGNDSLVLWTLQAGGKGAICGIANLFPHTMAS
IYELWKAGEFAEAKKVQDSIREIRNCFKLGNPNTIVKIATNLLGHPVGPCRKPFYTNS
ESIREEIQRVLHTYYKDFK"
misc_feature 269498..270352
/locus_tag="Amet_0229"
/note="Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell envelope
biogenesis, outer membrane]; Region: DapA; COG0329"
/db_xref="CDD:30677"
misc_feature 269516..270358
/locus_tag="Amet_0229"
/note="Dihydrodipicolinate synthase family; Region:
DHDPS-like; cd00408"
/db_xref="CDD:188630"
misc_feature order(269525..269527,269621..269623,269630..269638,
269900..269902,269984..269986)
/locus_tag="Amet_0229"
/note="inhibitor site; inhibition site"
/db_xref="CDD:188630"
misc_feature order(269621..269623,269630..269638,269900..269902,
269984..269986,270110..270112)
/locus_tag="Amet_0229"
/note="active site"
/db_xref="CDD:188630"
misc_feature order(269633..269635,269648..269653,269744..269749,
269819..269824,269843..269845,269855..269857,
270305..270310)
/locus_tag="Amet_0229"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188630"
misc_feature 269984..269986
/locus_tag="Amet_0229"
/note="catalytic residue [active]"
/db_xref="CDD:188630"
gene 270564..271649
/locus_tag="Amet_0230"
/db_xref="GeneID:5310273"
CDS 270564..271649
/locus_tag="Amet_0230"
/note="TIGRFAM: TRAP transporter solute receptor, TAXI
family;
KEGG: eba:p2A97 hypothetical protein, putative periplasmic
binding protein"
/codon_start=1
/transl_table=11
/product="TRAP transporter solute receptor TAXI family
protein"
/protein_id="YP_001318124.1"
/db_xref="GI:150388075"
/db_xref="InterPro:IPR011852"
/db_xref="GeneID:5310273"
/translation="MKKRGFLLAIAFMLAIGLLTGCAGTEPEAPTDSTPDEAVEENDE
SQAAGLTDPVRLVFSTQDLGTSFNSMTNAFNTVFMPELPRGSSIDVETTSPGGIAASY
IISAEVADLTIGNTAPANWATSEGIDDRGVAEGVASLGGGFDEPVLVVIFTEAFQKRT
GFTTLEEVIEAQHPVRVATKATGSFGEMSANKVLSLFDVTYDDIKSWGGDFTLTSSSN
VVDMLRDNRADMTIDHTNINQPNYVELSMTTPLYYVQLQDETLDRLHEMGYAYQDIAE
GSFNNYVKEDIKTVGSPTALLVREDMDEEVAYTLTEAMAEGKSKLVTSFAAFEAFDPT
KAWEPANAGAPLHPGAERYYREMGYMK"
misc_feature 270564..271637
/locus_tag="Amet_0230"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 271776..273716
/locus_tag="Amet_0231"
/db_xref="GeneID:5310274"
CDS 271776..273716
/locus_tag="Amet_0231"
/note="TIGRFAM: TRAP transporter, 4TM/12TM fusion protein;
PFAM: TRAP C4-dicarboxylate transport system permease DctM
subunit;
KEGG: dsy:DSY0650 hypothetical protein"
/codon_start=1
/transl_table=11
/product="TRAP transporter, 4TM/12TM fusion protein"
/protein_id="YP_001318125.1"
/db_xref="GI:150388076"
/db_xref="InterPro:IPR010656"
/db_xref="InterPro:IPR011853"
/db_xref="GeneID:5310274"
/translation="MDKQIASNSLMEKLIAIGWRKIAIVMVTVTFFAFQMYLAFIRPL
QPLMQNPLHFILALAIAILYYPVVKKTKDDELPKWKKMLPIIDMIILASLIFMAYYYM
TNEYRIVHRIQNIDPLITMDYVIMFMTVGILLECVRRILGANLLIFIFLFIGYAWLGP
YMPTVISHSGFTLRRFTELMVMGTGGVYGAPLNASAGFLYYFIIFGALFADCGSESVL
MDIGMKAGSKGSGGPAKAAILSSGLLGMINGSAVANVSTTGVMTIPMMKRIGYKSHEA
GAIEAVASTGGQIMPPIMGVGAFIMAEMIGVPYGQIALAATIPALAYFGSLFILVDLL
ARKRQISGEHVAEEIKTEPILKRLYLLIPILLVVIFIVRGASLMRSALIGTAAIIVIN
ILRGKNGLSAKELINSFFKGTKQVAEIAVPTASSGIIIGIVVMSGLANKLAAIISSVG
GNNMAFALVITTLGCMVLGMALPTVAAYLAAYILFMPSLINLGIPSLPANMFIFYFGI
IAQITPPVCLASFAAAGIAEASAWKTGWTAFRYALVAFLVPFVFVYKPEILLMGTVMD
TILATIVLFIGTFFLASAIAGHLFIPLNTKLKRYSLLICAIMVILPEPLTSMIGIVAG
IAIATVYFKSSKKITEVTVSGT"
misc_feature 271839..273629
/locus_tag="Amet_0231"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
gene 274037..274888
/locus_tag="Amet_0232"
/db_xref="GeneID:5310275"
CDS 274037..274888
/locus_tag="Amet_0232"
/note="PFAM: plasmid pRiA4b ORF-3 family protein;
KEGG: tte:TTE0676 hypothetical protein"
/codon_start=1
/transl_table=11
/product="plasmid pRiA4b ORF-3 family protein"
/protein_id="YP_001318126.1"
/db_xref="GI:150388077"
/db_xref="InterPro:IPR012912"
/db_xref="GeneID:5310275"
/translation="MARVARERSSTGIYHVMFRGINRQTIFEDEEDLNGGDIKVKSYI
IRIELEKSNPLIWRRVIMPAGATFNRLHDVIQNVTNFQSGYPSSGYHLFEFDLTEENM
LVTNDEQAYLEHQHYKKNKAMYEERLKTIPPEMIVFEKNYQERLKIEVRKPTGLKIDD
SLEKYKEIRYNYDFGDDWHFTVKLEEIVDDYYFGFPTLLDGVETAPPEDVGGIHGFYE
FLKAYRDPKHPEYEDIKTWAESLYFREYDPDWINERLKGINYKKTEWDNINHERYNII
EDKYRKK"
misc_feature 274157..274783
/locus_tag="Amet_0232"
/note="Plasmid pRiA4b ORF-3-like protein; Region:
PRiA4_ORF3; pfam07929"
/db_xref="CDD:203808"
gene 274935..275222
/locus_tag="Amet_0233"
/pseudo
/db_xref="GeneID:5310276"
gene 275426..276346
/locus_tag="Amet_0234"
/db_xref="GeneID:5310277"
CDS 275426..276346
/locus_tag="Amet_0234"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: mta:Moth_2297 daunorubicin resistance ABC
transporter ATP-binding subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001318127.1"
/db_xref="GI:150388078"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:5310277"
/translation="MNPIIEVKNFTKKYGDFIAVNDISFDVEEGTIFAFLGPNGAGKS
TTINTLCTIFEKTSGSLVIDGKDVTTQKSEVRSTIGVVFQDSTLDSKMTIDENLKMHC
VFYNVPKKEVEERIQFVLNLVDLLGERNKLVGALSGGMKRRVEIARGLIHFPKVLFLD
EPTTGLDPQTRSHIWEYIMKLQKERNITIFLTTHYMEEAEICNKIAIIDGGIIVAHDT
PYALKKEFTKDKAYITTEKGPELEQLLAQYELQYVKKEGYYKVDAEKTDLLLQVLSLQ
KEDITDIEIKKGTFNDVFLEITGKKIREDA"
misc_feature 275438..276094
/locus_tag="Amet_0234"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 275459..276322
/locus_tag="Amet_0234"
/note="daunorubicin resistance ABC transporter ATP-binding
subunit; Region: drrA; TIGR01188"
/db_xref="CDD:130256"
misc_feature 275534..275557
/locus_tag="Amet_0234"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(275543..275548,275552..275560,275675..275677,
275903..275908,276005..276007)
/locus_tag="Amet_0234"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 275666..275677
/locus_tag="Amet_0234"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 275831..275860
/locus_tag="Amet_0234"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 275891..275908
/locus_tag="Amet_0234"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 275915..275926
/locus_tag="Amet_0234"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 275993..276013
/locus_tag="Amet_0234"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 276348..277184
/locus_tag="Amet_0235"
/db_xref="GeneID:5310278"
CDS 276348..277184
/locus_tag="Amet_0235"
/note="PFAM: ABC-2 type transporter;
KEGG: mbu:Mbur_0388 ABC efflux pump, inner membrane
subunit"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_001318128.1"
/db_xref="GI:150388079"
/db_xref="InterPro:IPR000412"
/db_xref="InterPro:IPR013525"
/db_xref="InterPro:IPR013526"
/db_xref="GeneID:5310278"
/translation="MNTVFALWKRGLKAFIRNRTGLIFSLIFPFFFVYVFGAIFKNEF
IQNPIAYMLSGVIIATVFESALNLASTTVDDMVSGFMKEVLVSPAKRISVAIGQLLSA
ATVSTIQGILILVIGLFVGIRFTTWTTPLFVLLAMICVGLVFSGVGLFLATIVRSGQT
FQIIKTAVTMPLTFLSGAYIPIAMLPTSLQYVARINPMTYATAFFRTIVLEKTNLSTA
ELVKEGLAIDINGFIVTPIMSFAILVAVGLIFLVLSTNSFIRTDFSRLNRSATDANEI
WG"
misc_feature 276375..276950
/locus_tag="Amet_0235"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
misc_feature <276462..276974
/locus_tag="Amet_0235"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_3; pfam12698"
/db_xref="CDD:205027"
gene complement(277259..277441)
/locus_tag="Amet_0236"
/pseudo
/db_xref="GeneID:5310279"
gene 277746..278450
/locus_tag="Amet_0237"
/db_xref="GeneID:5310280"
CDS 277746..278450
/locus_tag="Amet_0237"
/note="KEGG: cth:Cthe_2132 abortive infection protein,
putative"
/codon_start=1
/transl_table=11
/product="abortive infection protein"
/protein_id="YP_001318129.1"
/db_xref="GI:150388080"
/db_xref="GeneID:5310280"
/translation="MVLDFFKEELIVVSDFTLKKTNLTFSLEDSPKKDFLAWNKILDG
FVKNADLGPQGIAFKSNKSENKESSNMELVSIYKYNDENIVIPAELMESRGTLKLVDF
AIPFEKLFKLGGVFVLDEFDAAIHPELIKGILALFNDSDRNKAGAQLIFTTHNPIYLN
NKIFRRDQIRFVEKDTDLYESVIYSLADFGSEEVRNDHNFLINYFKGNYGALPFIDFS
KLLNSNSGEEDEDGNL"
misc_feature <278022..278225
/locus_tag="Amet_0237"
/note="AAA domain; Region: AAA_21; pfam13304"
/db_xref="CDD:205484"
gene 278483..278806
/locus_tag="Amet_0238"
/db_xref="GeneID:5310281"
CDS 278483..278806
/locus_tag="Amet_0238"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318130.1"
/db_xref="GI:150388081"
/db_xref="GeneID:5310281"
/translation="MVSFSLLGMPTLLEGGSLSPGQTLLAGFIASSTMMIPRVSGSAV
LIILAKVLKTLFSKYQSQILFFFSGLILGSARMLFLSEFGVLSLITFMAGVGVVYKWG
RLKYK"
misc_feature <278537..278719
/locus_tag="Amet_0238"
/note="Domain of unknown function (DUF368); Region:
DUF368; cl00893"
/db_xref="CDD:193969"
gene complement(279009..280457)
/locus_tag="Amet_0239"
/db_xref="GeneID:5310282"
CDS complement(279009..280457)
/locus_tag="Amet_0239"
/note="KEGG: bcz:BCZK4937 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318131.1"
/db_xref="GI:150388082"
/db_xref="InterPro:IPR002048"
/db_xref="GeneID:5310282"
/translation="MKFCKECGEKLTDENKDCPKCGTVVLSDPTKPATTKGITNVNFL
ENLSKKHKVIIISVLAVFIFAFIGIRIGNSIATPERFVDSFQQALIDNDMDQLSKYIV
SSDPRLKVDEGSIEAFLAHINNNPSFLGELTNSLNQQTEALEGGHDSTKEVFGDAKDN
EHILTLRKQGKNMLFFDRYVVEPMAYYITLYTNYPDTKLYINGEEIDITHRMDFAREY
GPFMPGVYTLKAVLEGEFVDLEVEEELIIFDIYHNHVSVNLHLYGSHVNPTSNYNDTR
VFANGIDTGLTVSDISEFGPVSTDGSVVLHGVKEFPWGTIESDEVKLTGQSSAHLAIP
AVNDELNEQLMEAMNSYYLTSIAALMELDASLLKNTTPNNVATIESDIDHYTEYGHDY
HMELKEILYDLSSVSLFQEDGQYKAHISARQYLQYTDYSYFDENGEHAITNPDYDSQH
ILVYDKDAGEWQYKDSHGLWSINTHTIKSFEF"
misc_feature complement(<279477..280457)
/locus_tag="Amet_0239"
/note="Predicted membrane protein [Function unknown];
Region: COG4640"
/db_xref="CDD:34259"
misc_feature complement(280383..280451)
/locus_tag="Amet_0239"
/note="zinc-ribbon domain; Region: zinc_ribbon_2;
pfam13240"
/db_xref="CDD:205420"
gene complement(280495..282039)
/locus_tag="Amet_0240"
/db_xref="GeneID:5310283"
CDS complement(280495..282039)
/locus_tag="Amet_0240"
/note="KEGG: btl:BALH_4741 membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318132.1"
/db_xref="GI:150388083"
/db_xref="GeneID:5310283"
/translation="MYCKKCGYANPKEALYCLNDGFALQHLKGGYHYASASSRFCNSC
GAENEKHLIYCSTCGNSLLKVKKTSFDVEGLVAATSTVKNISTKNIASITNKLEMNHF
KNALPGSLVTIGILCIIALIIGSVISEEINMLYAEPLLYELGLGNQINNFQLISGIDI
ILLVNLIGTNLTLMTNYGREAFSGSLSLSYGFYSFLLLPFLVLVIGGYITGVKNPNTS
IKERAFLSLATGGIYAGFLLLVSLISRTSTEIPLFYEPDAFVRFTLSYSFLSSILNGI
VFGALFSFIGLLIQAGSLKAISAMVTARLYGESIYQGIVTGLKGIIISTVIVFLFLLN
NAGFSSDSTGAALFGEMFLLFIIVPQMGAYLWNMLNLASFTFSIQRFNDVESYSASIL
SGTEELRHLLSYIDNFDVYFYLALLIPIALFLWAGKQIKTSSSGNLIHEILVFSGVFS
IFSSFLVFITNFKISGSGQLFSLDFIGRMSASIGFNSIAVLFSSFILSFAIAYLSTMI
FSNRSN"
misc_feature complement(281863..282033)
/locus_tag="Amet_0240"
/note="Double zinc ribbon; Region: DZR; pfam12773"
/db_xref="CDD:205068"
misc_feature complement(281854..281925)
/locus_tag="Amet_0240"
/note="zinc-ribbon domain; Region: zf-ribbon_3; pfam13248"
/db_xref="CDD:205428"
gene complement(282058..282546)
/locus_tag="Amet_0241"
/db_xref="GeneID:5310284"
CDS complement(282058..282546)
/locus_tag="Amet_0241"
/note="KEGG: bat:BAS5094 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318133.1"
/db_xref="GI:150388084"
/db_xref="GeneID:5310284"
/translation="MSNLQSKLGDGFSKLQGGLEQGKTRLQTVQEINKLKKMVEDTTE
KKSKLLLDLGQLTHLWIREGKLQDSSFTEISNALTEVDQVIFTTFKKINELSANQEEE
NLCECGALITPNDKFCGECGLKLEEEATKEDIEMIHCSVCQEVIISSCNFCGCCGSKL
TA"
misc_feature complement(282076..282234)
/locus_tag="Amet_0241"
/note="Double zinc ribbon; Region: DZR; pfam12773"
/db_xref="CDD:205068"
misc_feature complement(282172..>282231)
/locus_tag="Amet_0241"
/note="zinc-ribbon domain; Region: zf-ribbon_3; cl11198"
/db_xref="CDD:209271"
gene 282958..283149
/locus_tag="Amet_0242"
/db_xref="GeneID:5310285"
CDS 282958..283149
/locus_tag="Amet_0242"
/note="KEGG: dsy:DSY2129 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318134.1"
/db_xref="GI:150388085"
/db_xref="GeneID:5310285"
/translation="MHKLRLNPMVTEDLIEIRDYITKELENPTAAVNVQTDFRYLVSG
SYIVFYQADNEFVSIYNSS"
misc_feature 282958..283134
/locus_tag="Amet_0242"
/note="Plasmid stabilisation system protein; Region:
Plasmid_stabil; cl17483"
/db_xref="CDD:248037"
gene 283240..283728
/locus_tag="Amet_0243"
/db_xref="GeneID:5310286"
CDS 283240..283728
/locus_tag="Amet_0243"
/note="PFAM: plasmid pRiA4b ORF-3 family protein;
KEGG: tte:TTE0676 hypothetical protein"
/codon_start=1
/transl_table=11
/product="plasmid pRiA4b ORF-3 family protein"
/protein_id="YP_001318135.1"
/db_xref="GI:150388086"
/db_xref="InterPro:IPR012912"
/db_xref="GeneID:5310286"
/translation="MKSYIIRIELEESNPLIWRRVVMPAGATFNRLHDIIQNVTNFQS
GYPSSGYHLFEFDLTDENKIITNDEEIYLEHQHYKKNKAMYEERLQPMPPEMLQFEEP
HQERLKREVRKPTGLKVDDYLEKYKEIRYAYDFGDDWHFIVKLESIVDDYYFGFPRTN
GA"
misc_feature 283240..>283692
/locus_tag="Amet_0243"
/note="Plasmid pRiA4b ORF-3-like protein; Region:
PRiA4_ORF3; pfam07929"
/db_xref="CDD:203808"
gene 283721..283990
/locus_tag="Amet_0244"
/db_xref="GeneID:5310287"
CDS 283721..283990
/locus_tag="Amet_0244"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318136.1"
/db_xref="GI:150388087"
/db_xref="InterPro:IPR006186"
/db_xref="GeneID:5310287"
/translation="MPDTNLSKTTKDDLMIVLGDAGVNYYENERDALLKEDLEVWPIT
FFFVRGNHERDPANISTYVEQPFNEGKVLIEPDYPSLLFAKDGAV"
misc_feature 283733..>283879
/locus_tag="Amet_0244"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature 283751..>283894
/locus_tag="Amet_0244"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
gene 284184..284462
/locus_tag="Amet_0245"
/db_xref="GeneID:5310288"
CDS 284184..284462
/locus_tag="Amet_0245"
/note="KEGG: cth:Cthe_0703 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318137.1"
/db_xref="GI:150388088"
/db_xref="GeneID:5310288"
/translation="MDDKLFQLMEKMYSEMQEGFKKVNTKLDSVESRMSSVEFRMDKV
EKTVLNMEDSHGKKLDVLFDGYKQNSEKLDRIEEEVNKHEEVIIRKIK"
gene 284745..286013
/locus_tag="Amet_0246"
/db_xref="GeneID:5310289"
CDS 284745..286013
/locus_tag="Amet_0246"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318138.1"
/db_xref="GI:150388089"
/db_xref="InterPro:IPR003006"
/db_xref="GeneID:5310289"
/translation="MISISSNSMKQTLHQYLMQYRSVFKKRSFDIFYWLIMGILCTEE
VRSIQIEALTTITVSIALSLIPEKLRQNTLFITIDDTLQAKYGAKFDCYAKHFDHTKK
NGTKYLNGHCFVSVVLNIPLYYQDKAKYLSIPIGYRLYSKEQNKLEMASQIIKCIMPQ
LEMFQVILLCDSWYSKGSILDTVKEFDNLKIIGAVRHDTAIYDLPPAPTGKRGRPRKR
GRPKKRGRKLNTREFSYTKIGKYYVAEKKVMANLFEKPIYVTVTTTDIKPFSSIRVFI
SSINPDEIKTINTALNTKGALNDQNEDECTSKTLTTYRMRWNIEVMFYQHKFFWSFGN
YMVRNKAAIERYVNLLFVAYTFACLLPFMDKRYEKYQFKSPQLIKRTVGVQITKELIF
DSFVLSFESAKIYSTIKESVQGFLNKDWVA"
misc_feature 284778..285371
/locus_tag="Amet_0246"
/note="DDE superfamily endonuclease; Region: DDE_5;
cl02413"
/db_xref="CDD:213106"
gene complement(286228..286686)
/locus_tag="Amet_0247"
/db_xref="GeneID:5310290"
CDS complement(286228..286686)
/locus_tag="Amet_0247"
/note="PFAM: CheC domain protein;
KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in
chemotaxis operon)"
/codon_start=1
/transl_table=11
/product="CheC domain-containing protein"
/protein_id="YP_001318139.1"
/db_xref="GI:150388090"
/db_xref="InterPro:IPR007597"
/db_xref="GeneID:5310290"
/translation="MEVKYINPFVQSFINIMSQIGFEDPKKIGASVKTSNLNGSGIMV
IVGIMGAIKGNVIYGIDEDSAKKIVSTMMGGVEVTELDDMAQSAISELANMLTAHSGI
VFSQSEINIDISTPTLMHGSDFQVKASTEKVLCVRMSAGEIQMDINIALH"
misc_feature complement(286234..286686)
/locus_tag="Amet_0247"
/note="Predicted inhibitor of MCP methylation, homolog of
CheC [Cell motility and secretion]; Region: COG1406"
/db_xref="CDD:31596"
misc_feature complement(286270..286533)
/locus_tag="Amet_0247"
/note="Chemotaxis phosphatase CheX; Region: CheX;
pfam13690"
/db_xref="CDD:205866"
gene complement(286677..287543)
/locus_tag="Amet_0248"
/db_xref="GeneID:5310291"
CDS complement(286677..287543)
/locus_tag="Amet_0248"
/note="PFAM: response regulator receiver;
KEGG: cac:CAC0585 N-terminal CheY reciever domain fused to
C-terminal uncharacterized CheX-like domain"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_001318140.1"
/db_xref="GI:150388091"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:5310291"
/translation="MKKNKVMIVDDSSFLRNIISDILQQSGFEIVGQAGSKEEALEVY
DKTNPDIVTMDIAMPGADGFECVKALFEKNQDLKIIMISSMQDEELLTKAEKMKISGF
IQKPFEEEDLISVVKGIMEAEENYEFLKSISTEAFKDAFNNGITRLTKKIPTAFREEE
ELNQYHSKGVTTLVGVIGVYSGRMIVDMSYDTADKIAAEMLRRQTKDKEEVLNTISEF
ANIICGNVCSNINKTKGLFGLRVAPPIIFYGEDLHSSTPNIHSKSLWVTTDFGEVWLN
IGFKRSEGLIWK"
misc_feature complement(287172..287543)
/locus_tag="Amet_0248"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(287184..287525)
/locus_tag="Amet_0248"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(287226..287231,287238..287240,
287295..287297,287355..287357,287379..287381,
287511..287516))
/locus_tag="Amet_0248"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(287379..287381)
/locus_tag="Amet_0248"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(287355..287363,287367..287372))
/locus_tag="Amet_0248"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(287223..287231)
/locus_tag="Amet_0248"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(286791..287036)
/locus_tag="Amet_0248"
/note="Chemotaxis phosphatase CheX; Region: CheX;
pfam13690"
/db_xref="CDD:205866"
gene complement(287778..289841)
/locus_tag="Amet_0249"
/db_xref="GeneID:5310292"
CDS complement(287778..289841)
/locus_tag="Amet_0249"
/note="PFAM: histidine kinase, HAMP region domain protein;
Cache domain protein; chemotaxis sensory transducer;
KEGG: cac:CAC2821 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_001318141.1"
/db_xref="GI:150388092"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004010"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:5310292"
/translation="MSTKMKKKSIAISIISYVIPVVLVILVSISSIGYIFSKNIIVTQ
LDNIMETKLTETVRSIENTLFTQKAITKSMAKTIESNFDNMTMADYDDLLINYISMYD
ETFGMGIWFEPYAFQDLEQYAPYGYRDGPHIVADDSYTSGDLNIWTTEWYEVGKTNRD
GGWTESYFDPATEVAMVTISYPIYDPSHNLLGVVTADIDISSIQNTISTLDIDYDGSA
ILIEESGIYLGGVQEHQLITDSLKNHDNPSLVEASEGMFVNQYGKGQYIENSDNHLFY
YETIPETGWKIGIQVNESTLFEDLNSLLLIFVMTSIVSIILVIILIAIFANNIRKVTK
RYSDVAQNVSNGNLKNVFHEKELTRKDELGDIGRSLNEMQNKLKEVVESFKLNATNID
EHAQNLSAFSEEMSTTSEGVSLAIEDVAEGASNQFQKLKDVGNVINRFGNDVDFMSQS
IDDVEHSAEDIKNMANTSNEEMNKMTASFEKLDSTFKDLINCVRSVQSNINQVNEVTS
LINSISNQTNLLSLNAAIEAARAGEAGRGFAVVADEIRKLAEQSTQSSEEIDKIISDI
AIDTEKMVASTEEVNIEVSSQRNHIDTTINSFKNIIQLVENITPKVALTKEISERINQ
DKNLVLGEIEATGGISENVAASAEEIAASAEEMTASAQEVSASSTDLSGMTNEMRENI
KFFKI"
misc_feature complement(289158..289355)
/locus_tag="Amet_0249"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature complement(288705..288833)
/locus_tag="Amet_0249"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(288711..288716,288723..288728,
288732..288737,288744..288749,288753..288758,
288813..288815,288819..288824,288831..288833))
/locus_tag="Amet_0249"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(287784..288608)
/locus_tag="Amet_0249"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(288015..288500)
/locus_tag="Amet_0249"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(288018..288020,288027..288032,
288039..288041,288048..288053,288060..288065,
288069..288074,288081..288083,288090..288095,
288102..288104,288111..288116,288153..288158,
288165..288170,288174..288179,288186..288191,
288198..288200,288207..288212,288219..288221,
288228..288230,288240..288242,288261..288263,
288270..288272,288282..288284,288291..288296,
288303..288305,288312..288314,288321..288326,
288333..288338,288345..288347,288354..288359,
288363..288365,288375..288380,288384..288389,
288396..288398,288405..288410,288417..288422,
288429..288431,288438..288443,288450..288452,
288459..288464,288468..288473,288480..288482,
288489..288494))
/locus_tag="Amet_0249"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(288195..288296)
/locus_tag="Amet_0249"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 290395..290745
/locus_tag="Amet_0250"
/db_xref="GeneID:5310293"
CDS 290395..290745
/locus_tag="Amet_0250"
/note="PFAM: microcompartments protein;
KEGG: ctc:CTC02181 ethanolamine utilization protein eutS"
/codon_start=1
/transl_table=11
/product="microcompartments protein"
/protein_id="YP_001318142.1"
/db_xref="GI:150388093"
/db_xref="InterPro:IPR000249"
/db_xref="GeneID:5310293"
/translation="MATEEKQRMVQEYVPGKQVTLAHLIAHPQHSIYKKLGLIEDEYN
AIGILTITPGEAAIIAADVATKSASVEIGFLDRFSGSLVITGDVASVESALLGVIESL
TNTLQFTPAELTRS"
misc_feature 290413..290742
/locus_tag="Amet_0250"
/note="1,2-propanediol utilization protein U
(PduU)/ethanolamine utilization protein S (EutS),
Bacterial Micro-Compartment (BMC) domain; Region:
BMC_PduU-EutS; cd07046"
/db_xref="CDD:132886"
misc_feature order(290542..290544,290551..290553,290578..290580,
290587..290592,290608..290610,290623..290625,
290629..290631)
/locus_tag="Amet_0250"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132886"
misc_feature 290623..290625
/locus_tag="Amet_0250"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132886"
gene 290757..291185
/locus_tag="Amet_0251"
/db_xref="GeneID:5310294"
CDS 290757..291185
/locus_tag="Amet_0251"
/note="TIGRFAM: ethanolamine utilization protein, EutP;
KEGG: ctc:CTC02180 ethanolamine utilization protein eutP"
/codon_start=1
/transl_table=11
/product="ethanolamine utilization protein, EutP"
/protein_id="YP_001318143.1"
/db_xref="GI:150388094"
/db_xref="InterPro:IPR012381"
/db_xref="GeneID:5310294"
/translation="MKKVILVGRTGSGKTSLSQRLNQQELIYKKTQAMEFSDRVLDTP
GEYIENRRFYYAIISASADCDVIGILQAIDEPNCIFPPGFGNFFNKPVIGIITKIDLE
HDSGNVESDLYAAGAQQIFRISAVTGEGLEELRVYMEEVD"
misc_feature 290772..291170
/locus_tag="Amet_0251"
/note="Rat sarcoma (Ras)-like superfamily of small
guanosine triphosphatases (GTPases); Region:
Ras_like_GTPase; cd00882"
/db_xref="CDD:206648"
misc_feature 290778..290801
/locus_tag="Amet_0251"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature order(290784..290804,290889..290891,291045..291050,
291054..291056,291126..291134)
/locus_tag="Amet_0251"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature 290847..290849
/locus_tag="Amet_0251"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature 290859..290867
/locus_tag="Amet_0251"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature 290880..290891
/locus_tag="Amet_0251"
/note="G3 box; other site"
/db_xref="CDD:206648"
misc_feature order(290886..290891,290949..290954)
/locus_tag="Amet_0251"
/note="Switch II region; other site"
/db_xref="CDD:206648"
misc_feature 291045..291056
/locus_tag="Amet_0251"
/note="G4 box; other site"
/db_xref="CDD:206648"
misc_feature 291126..291134
/locus_tag="Amet_0251"
/note="G5 box; other site"
/db_xref="CDD:206648"
gene 291290..291859
/locus_tag="Amet_0252"
/db_xref="GeneID:5310295"
CDS 291290..291859
/locus_tag="Amet_0252"
/note="PFAM: response regulator receiver; ANTAR domain
protein;
KEGG: ctc:CTC02179 ethanolamine utilization response
regulator"
/codon_start=1
/transl_table=11
/product="response regulator receiver/ANTAR
domain-containing protein"
/protein_id="YP_001318144.1"
/db_xref="GI:150388095"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR005561"
/db_xref="GeneID:5310295"
/translation="MKGRVVIADDEPITRMDIVEMLLEEGYDIVGEASDGFDAIELCK
KHKPDLVLMDVKMPLLNGLKAAEVINQDELAACVVLVTAYSGREFVEEAKKAGAMGYV
VKPINEKNLLPTLEVAVSKSKEFNEMKSQVKKAQVQLEDRKQIERAKGILMKKEMLSE
EEAYNQIRKLSMSKRCSMGEIAKIITMNQ"
misc_feature 291290..291853
/locus_tag="Amet_0252"
/note="Response regulator with putative antiterminator
output domain [Signal transduction mechanisms]; Region:
AmiR; COG3707"
/db_xref="CDD:33502"
misc_feature 291305..291646
/locus_tag="Amet_0252"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(291314..291319,291449..291451,291473..291475,
291533..291535,291590..291592,291599..291604)
/locus_tag="Amet_0252"
/note="active site"
/db_xref="CDD:29071"
misc_feature 291449..291451
/locus_tag="Amet_0252"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(291458..291463,291467..291475)
/locus_tag="Amet_0252"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 291599..291607
/locus_tag="Amet_0252"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 291680..291844
/locus_tag="Amet_0252"
/note="ANTAR domain; Region: ANTAR; pfam03861"
/db_xref="CDD:202788"
gene 291882..293291
/locus_tag="Amet_0253"
/db_xref="GeneID:5310296"
CDS 291882..293291
/locus_tag="Amet_0253"
/note="PFAM: ATP-binding region, ATPase domain protein;
histidine kinase, dimerisation/phosphoacceptor;
KEGG: cac:CAC2720 sensory protein containing histidine
kinase, PAS anf GAF domains"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_001318145.1"
/db_xref="GI:150388096"
/db_xref="InterPro:IPR000209"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001395"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR011495"
/db_xref="GeneID:5310296"
/translation="MLQELCKTYTQLSDSDILILENAKQMLPLISSAIRADVFIDCLT
NIPNTAIVVAEAKQSQKESMYQHSVVGKFALGENEPAALRTLETGLASRDLKALTQEN
KTVRQSVEPIRNKEDQMIGVLIIEQDITKDIKRDKEMENLLQTAEKLTETVSTLKGAE
STIIHHVNEAIIMFNRNGIATYCNPEAHQLYKKLGYQDEIVGLSFNNLTLGGMTFSGV
IHKDLVNVVEVKVGKLSLRVKYVAMEDENEVIGFIMIINDVTEVKEKEMELVSKSVVI
SEIHHRVKNNLQTIASLLRLQSRRIHEVKAKQAFNESISRILSIAITHELLAQRGVDD
VDLRTILERIKESTMDYVISPDKMISISIEGDHIIVNSDKATSIALVVNELLQNALEH
GFKGRQEGKIRIHIRKSDIYTDVTVVDSGLGFDAEKVKTKSLGLSIVKSIVRERLYGN
LQMNSSNQGTEIRFNFKNK"
misc_feature 291882..292334
/locus_tag="Amet_0253"
/note="Signal transduction histidine kinase; Region:
H_kinase_N; pfam12282"
/db_xref="CDD:204870"
misc_feature 292362..>292505
/locus_tag="Amet_0253"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cl02459"
/db_xref="CDD:207601"
misc_feature 292365..292688
/locus_tag="Amet_0253"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature 292647..293288
/locus_tag="Amet_0253"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature 292713..292922
/locus_tag="Amet_0253"
/note="Histidine kinase; Region: HisKA_2; pfam07568"
/db_xref="CDD:203685"
misc_feature 293013..293279
/locus_tag="Amet_0253"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(293031..293033,293043..293045,293052..293054,
293130..293132,293136..293138,293142..293144,
293148..293153,293178..293189,293238..293240,
293244..293246,293256..293261,293265..293267)
/locus_tag="Amet_0253"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 293043..293045
/locus_tag="Amet_0253"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(293142..293144,293148..293150,293178..293180,
293184..293186)
/locus_tag="Amet_0253"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 293398..294831
/gene="eutA"
/locus_tag="Amet_0254"
/db_xref="GeneID:5310297"
CDS 293398..294831
/gene="eutA"
/locus_tag="Amet_0254"
/note="ethanolamine utilization protein EutA"
/codon_start=1
/transl_table=11
/product="reactivating factor for ethanolamine ammonia
lyase"
/protein_id="YP_001318146.1"
/db_xref="GI:150388097"
/db_xref="InterPro:IPR009377"
/db_xref="GeneID:5310297"
/translation="MTEEVFSVGIDIGTSTTQLVFSKLTIENTASMMAIPKIQIIDKE
VVYRSDIHFTPLLSDTRIDGDAIRRIIELEYKKANISFEKIDTGAVIITGETARKENA
NEILSTLSGLAGDFVVATAGPDLESIIAGKGAGAGKFSKEKGCTVANLDVGGGTTNIA
IFKNGEVIDTACLDIGGRLIKFANDQLKVSYASGKIKVLAKEIGIDVEVGNKLSVEEV
ERISRRMGEVLAESIGLIPETTLLQKMLTGTSLKRQGEIDCISFSGGVADCIFNKEIA
PPFKYGDIGIVLGKSIASSPWLETAKVIQASETIGATVVGAGTHTTEISGSTITIEAS
ILPMKNIPILRLNQEDEELVYDQLSHRIAEKLDWFRLENGQQLVALAMRGLKNPSFKE
IQGLAKAIIKGMENKLGEKQPLIIVVEQDMGKILGQGIHAHLAGKRDVICIDSIKVDN
GDYIDIGKPLANGKVVPVIVKTLVFNY"
misc_feature 293404..294825
/gene="eutA"
/locus_tag="Amet_0254"
/note="Ethanolamine utilisation protein EutA; Region:
EutA; pfam06277"
/db_xref="CDD:148092"
misc_feature 293836..>294114
/gene="eutA"
/locus_tag="Amet_0254"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 294851..296218
/locus_tag="Amet_0255"
/db_xref="GeneID:5310298"
CDS 294851..296218
/locus_tag="Amet_0255"
/note="PFAM: Ethanolamine ammonia lyase large subunit;
KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large
subunit"
/codon_start=1
/transl_table=11
/product="ethanolamine ammonia lyase large subunit"
/protein_id="YP_001318147.1"
/db_xref="GI:150388098"
/db_xref="InterPro:IPR010628"
/db_xref="GeneID:5310298"
/translation="MILKSKLFGTVYQFKSLNEVMAKANEERSGDKLAGLAAESVTEM
VAAKEVLSNITLKDIRNNPAVPYETDEVTRVIQDGVNEKIYKEIQNWTVSELREWILS
NETTGSDIKRIGRGLTSEMVAAVTKLMSNLDLVYGAKKIIVTAHCNTTIGESGTLAYR
LQPNHTTDNIEGIKVSLYEGLSYGVGDAVLGLNPVNDTVNSVKNVLNLFEEVKQKWQI
PTQTCVLAHITTQMEAIRQGAPSDMIFQSIAGTEKGNEAFGLNDSLLSEARELVLKEG
TSTGPNVMYFETGQGSELSSDAHMGVDQVTLEARCYGLAKKHSPFLVNTVVGFIGPEY
LYNSKQVMRAGLEDHFMGKLSGIPMGVDVCYTNHMKADQNDIENLSVLLASAGCNFLI
GTPAGDDIMLNYQSSSFHDAATLRELLNLTPIPEFQKWLEKMGISENGRLSKRAGDAS
IFFSK"
misc_feature 294851..296215
/locus_tag="Amet_0255"
/note="ethanolamine ammonia lyase large subunit;
Provisional; Region: PRK15067"
/db_xref="CDD:185027"
misc_feature 294881..296206
/locus_tag="Amet_0255"
/note="Ethanolamine ammonia lyase large subunit (EutB);
Region: EutB; pfam06751"
/db_xref="CDD:203514"
gene 296244..297143
/locus_tag="Amet_0256"
/db_xref="GeneID:5310299"
CDS 296244..297143
/locus_tag="Amet_0256"
/EC_number="4.3.1.7"
/note="catalyzes the formation of acetaldehyde from
ethanolamine"
/codon_start=1
/transl_table=11
/product="ethanolamine ammonia-lyase small subunit"
/protein_id="YP_001318148.1"
/db_xref="GI:150388099"
/db_xref="InterPro:IPR009246"
/db_xref="GeneID:5310299"
/translation="MISEQAVKEMVQQIVEQMTIGQKQTTEDKYTQETDGKEQPEICI
EDKNLKDLTEIKMQDYFAVPNPENKEVYLGLKEQTPARVGIWRTGSRNSTETLLRFRA
DHAVAMDAVFTYVSEELLEEVGLFSVNTLCRNKDEYMTRPDLGRKFSQETIEMIKEKC
VKSPQVQIYVSDGLSSTAIEANIKDILPSIMQGLENEGLKVGTPFFVKHGRVPAMDVI
SETLDAGATVVLIGERPGLATGESMSCYMTYGGTVGMPESRRTVISNIHRGGTPATEA
GAHIAQIVKEMINQKASGLDLKL"
misc_feature 296412..297140
/locus_tag="Amet_0256"
/note="ethanolamine ammonia-lyase small subunit;
Provisional; Region: PRK05465"
/db_xref="CDD:180102"
gene 297167..297820
/locus_tag="Amet_0257"
/db_xref="GeneID:5310300"
CDS 297167..297820
/locus_tag="Amet_0257"
/note="PFAM: microcompartments protein;
KEGG: fnu:FN0081 ethanolamine utilization protein eutL"
/codon_start=1
/transl_table=11
/product="microcompartments protein"
/protein_id="YP_001318149.1"
/db_xref="GI:150388100"
/db_xref="InterPro:IPR000249"
/db_xref="GeneID:5310300"
/translation="MKNDALRASVLSAKIISNASPDMIKELKLEPGHRSIGILTADSD
DVLYTALDEATKKADIKVAYAKSFYGGAANANTKLAGEVIGIISGPNPAEVRSGLDAV
IDFAENNACFYSANEDDSIAYYAHCISRTGSYLSEVAGIKEGEAIAYVIAPPMEAIYA
LDAAMKAADVEMVCFYGPPSETNFGGGLLTGSQSACKAACDAFAEAVKFVADNPTKY"
misc_feature 297167..297817
/locus_tag="Amet_0257"
/note="ethanolamine utilization protein EutL; Provisional;
Region: PRK15405"
/db_xref="CDD:185303"
misc_feature 297194..297502
/locus_tag="Amet_0257"
/note="ethanolamine utilization protein S (EutS),
Bacterial Micro-Compartment (BMC) domain repeat 1; Region:
BMC_EutL_repeat1; cd07049"
/db_xref="CDD:132889"
misc_feature order(297284..297286,297293..297295,297320..297322,
297329..297334,297350..297352,297365..297367,
297410..297412)
/locus_tag="Amet_0257"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132889"
misc_feature 297365..297367
/locus_tag="Amet_0257"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132889"
misc_feature 297554..297814
/locus_tag="Amet_0257"
/note="ethanolamine utilization protein S (EutS),
Bacterial Micro-Compartment (BMC) domain repeat 2; Region:
BMC_EutL_repeat2; cd07050"
/db_xref="CDD:132890"
misc_feature order(297617..297619,297626..297628,297650..297652,
297659..297664,297680..297682,297695..297697,
297716..297718)
/locus_tag="Amet_0257"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132890"
misc_feature 297695..297697
/locus_tag="Amet_0257"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132890"
gene 297838..298458
/locus_tag="Amet_0258"
/db_xref="GeneID:5310301"
CDS 297838..298458
/locus_tag="Amet_0258"
/note="PFAM: microcompartments protein;
KEGG: lmo:lmo1178 hypothetical protein"
/codon_start=1
/transl_table=11
/product="microcompartments protein"
/protein_id="YP_001318150.1"
/db_xref="GI:150388101"
/db_xref="InterPro:IPR000249"
/db_xref="GeneID:5310301"
/translation="MSNNALGLLETYGYTPSIVALDAALKTANVTLKDFQITGGGLVT
MMVEGDVAAVQAAIEAGNIAAETIGRVISQHVIPRPDIGLKSLLQSHEGKNKQPVEGP
VSISLDEESQELEEKEATQELEEAPSQKLEEVEIQNKSENPGNHHNGKEIKIRSKKDL
NRMKVVELRKMARGLDGFSMEAKTIKFANKSELVAALLSHFRMEVE"
misc_feature 297841..>298143
/locus_tag="Amet_0258"
/note="Carbon dioxide concentrating mechanism/carboxysome
shell protein [Secondary metabolites biosynthesis,
transport, and catabolism / Energy production and
conversion]; Region: CcmK; COG4577"
/db_xref="CDD:34215"
misc_feature 297850..298101
/locus_tag="Amet_0258"
/note="Carbon dioxide concentrating mechanism K
(CcmK)-like proteins, Bacterial Micro-Compartment (BMC)
domain; Region: BMC_CcmK_like; cd07045"
/db_xref="CDD:132885"
misc_feature order(297865..297867,297874..297876,297901..297903,
297910..297915,297931..297933,297946..297948,
297955..297963,298054..298062,298066..298068,
298072..298077,298084..298086)
/locus_tag="Amet_0258"
/note="Hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:132885"
misc_feature 297946..297948
/locus_tag="Amet_0258"
/note="Hexagonal pore residue; other site"
/db_xref="CDD:132885"
gene 298459..299910
/locus_tag="Amet_0259"
/db_xref="GeneID:5310302"
CDS 298459..299910
/locus_tag="Amet_0259"
/note="TIGRFAM: acetaldehyde dehydrogenase (acetylating);
KEGG: dde:Dde_3279 aldehyde dehydrogenase, putative"
/codon_start=1
/transl_table=11
/product="acetaldehyde dehydrogenase"
/protein_id="YP_001318151.1"
/db_xref="GI:150388102"
/db_xref="InterPro:IPR013357"
/db_xref="GeneID:5310302"
/translation="MQLQDKDLLSIQEVRDMVSKANKAQTEFSKFSQEAIDEIVYGMK
QAAYSQAEFLGKFASEETGFGKWQDKKTKNEIASEGVYNHIQNMKTIGVIHEDAEKKI
VEIGTPVGTIAALIPSTNPTSTVIYKALIALKSGNAIIFSPHPSGLKSILKTVEILNK
AAVEAGAPDGLLHCMTLPSMEGTSELMKHSGVDLILATGGSAMVKAAYSSGTPALGVG
PGNVPVFIERSADIKEAIGKIFSSKTFDNGTVCASEQAIVTERCISEKVKEEVKRQGG
YFLVGEQLEKVTAIMETVTGGMNPKIVGRSAQDIATIAGIEIPKETKILLCEEQNVGK
NVPFSKEKLTALLGFYTVEDWQKGCELCYALLENGGLGHTLAIHSQDESIIREFALKK
PVSRILVNTPSTQGAIGLSTNLAPSFTLGCGAIGGSATSDNVGPMNLINIRRMAYGID
DCRERETQDSKELSSIDIEVITQLVMESLKNKI"
misc_feature 298498..299802
/locus_tag="Amet_0259"
/note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
/db_xref="CDD:143440"
misc_feature 299209..299211
/locus_tag="Amet_0259"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143440"
gene 299934..300218
/locus_tag="Amet_0260"
/db_xref="GeneID:5310303"
CDS 299934..300218
/locus_tag="Amet_0260"
/note="PFAM: microcompartments protein;
KEGG: lwe:lwe1138 propanediol/ethanolamine utilization
protein"
/codon_start=1
/transl_table=11
/product="microcompartments protein"
/protein_id="YP_001318152.1"
/db_xref="GI:150388103"
/db_xref="InterPro:IPR000249"
/db_xref="GeneID:5310303"
/translation="MAISNALGMIETKGLVGAIEAADAMVKAANVTLLGKEHVGGGLV
TVMVRGDVGAVKAATDAGAAAAERVGELMSVHVIPRPHGEVETILPQIKE"
misc_feature 299943..>300203
/locus_tag="Amet_0260"
/note="Carbon dioxide concentrating mechanism/carboxysome
shell protein [Secondary metabolites biosynthesis,
transport, and catabolism / Energy production and
conversion]; Region: CcmK; COG4577"
/db_xref="CDD:34215"
misc_feature 299949..300203
/locus_tag="Amet_0260"
/note="1,2-propanediol utilization protein A (PduA),
Bacterial Micro-Compartment (BMC) domain; Region:
BMC_PduA; cd07059"
/db_xref="CDD:132899"
misc_feature order(299964..299966,299973..299975,300000..300002,
300009..300014,300030..300032,300045..300047,
300054..300062,300153..300161,300165..300167,
300171..300176,300183..300185)
/locus_tag="Amet_0260"
/note="Hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:132899"
misc_feature 300045..300047
/locus_tag="Amet_0260"
/note="Putative hexagonal pore residue; other site"
/db_xref="CDD:132899"
gene 300284..301057
/locus_tag="Amet_0261"
/db_xref="GeneID:5310304"
CDS 300284..301057
/locus_tag="Amet_0261"
/note="PFAM: cobalamin adenosyltransferase;
KEGG: ctc:CTC02171 ethanolamine utilization protein"
/codon_start=1
/transl_table=11
/product="cobalamin adenosyltransferase"
/protein_id="YP_001318153.1"
/db_xref="GI:150388104"
/db_xref="InterPro:IPR002779"
/db_xref="GeneID:5310304"
/translation="MKVLTETSLRMEFKNKFPKTYSINSGILVTPSAKQYLKEKRIEL
IVEEEQDLEKQEVVSTDPKEVNQKQKQQVLPKYKCYFSGGFFESKPEHMTQLHGNFLV
NKDHPRIVLRGKLDSFQAQILEVQVILNNRKEKKLLADLSEVLTFVRSILRAEVLEEP
FNQCEILGLGEAELRKMSHNPEQFFDVNHFLPDYSMGTVLIKLNSLRSAAREVEIVGV
KAFTGANGDIKRVDMIQALNRLSSCLYIMMCRWQGGYYK"
misc_feature 300284..301054
/locus_tag="Amet_0261"
/note="Cobalamin adenosyltransferase; Region:
Cob_adeno_trans; cl00920"
/db_xref="CDD:212249"
gene 301076..301714
/locus_tag="Amet_0262"
/db_xref="GeneID:5310305"
CDS 301076..301714
/locus_tag="Amet_0262"
/note="PFAM: Propanediol utilization protein;
KEGG: ssa:SSA_0527 propanediol utilization protein PduL"
/codon_start=1
/transl_table=11
/product="propanediol utilization protein"
/protein_id="YP_001318154.1"
/db_xref="GI:150388105"
/db_xref="InterPro:IPR008300"
/db_xref="GeneID:5310305"
/translation="MKEEQIKQIVEQVIKTFEEAQSVPMEVPVEVSARHIHLSKEHIS
LLFGSEDQLSIIKELSQPGQFQYDKRVTLIGPKGSIGNVAILGPSRDETQVEISYTDA
RALGIKPPLRESGDLQDTAGIIIATGHKAINLEGGVMIAKRHIHMTPKDAEVFHVKDG
EHVKVRIESKRPIVLEDVLVRVNEKYGLSMHIDHDEGNAAAYQPGTTGKMIK"
misc_feature 301076..301711
/locus_tag="Amet_0262"
/note="propanediol utilization phosphotransacylase;
Provisional; Region: PRK15070"
/db_xref="CDD:185030"
misc_feature 301151..301399
/locus_tag="Amet_0262"
/note="Propanediol utilisation protein PduL; Region: PduL;
pfam06130"
/db_xref="CDD:203393"
misc_feature 301484..301675
/locus_tag="Amet_0262"
/note="Propanediol utilisation protein PduL; Region: PduL;
pfam06130"
/db_xref="CDD:203393"
gene 301730..302551
/locus_tag="Amet_0263"
/db_xref="GeneID:5310306"
CDS 301730..302551
/locus_tag="Amet_0263"
/note="TIGRFAM: ethanolamine utilization protein EutJ
family protein;
KEGG: ctc:CTC02168 ethanolamine utilization protein EutJ"
/codon_start=1
/transl_table=11
/product="ethanolamine utilization protein EutJ family
protein"
/protein_id="YP_001318155.1"
/db_xref="GI:150388106"
/db_xref="InterPro:IPR013126"
/db_xref="InterPro:IPR013366"
/db_xref="GeneID:5310306"
/translation="MDFTQVNDLVSQVEKSIHETFPFDRSKELLVGVDLGTAYVVIVV
LDQQNNPIACEMEFAQVVRDGLVVDYIGATQIVRKLKEKLEKRLGQSLLKAAIALPPG
TGSKDSRTHNYVVEGAGLEVVSVVDEPTAANNVLQVKNGVIVDIGGGTTGLSIIKNDE
VIHTVDEATGGTHLSLVLAGNYRVKFEEAEKIKKDPTRKKEVLAIVRPVIQKMASIIQ
NNIVDYDVETIYLVGGTCCLDGFEDVVEKETGISTQKPHNPFLVTPLGIAMNCRE"
misc_feature 301745..302542
/locus_tag="Amet_0263"
/note="ethanolamine utilization protein EutJ; Provisional;
Region: PRK15080"
/db_xref="CDD:185038"
gene 302563..303300
/locus_tag="Amet_0264"
/db_xref="GeneID:5310307"
CDS 302563..303300
/locus_tag="Amet_0264"
/note="KEGG: ctc:CTC02167 putative ethanolamine
utilization protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318156.1"
/db_xref="GI:150388107"
/db_xref="GeneID:5310307"
/translation="MEIEVLVQKITEEVMKQLKGRQKNEKPQFSKKALILSDKNPINK
QEIRQLETMGVECVSLGECPEDEIRNMDYIILLTLPLSSLSYIARGVEGDEISKGAIG
GLLYGKEIFVLCEGIEHRKFEQTSQHHFYQMYMDYEKKLQGFGVKIGTLKKILSLLNQ
KPQQEQSSTEAIKQAEEIRKTEESVKTEQVDEKESPLISNKLITENTLKEMGCREKSR
ISITAKAIVTPMANDYIRMMKIQVIRV"
misc_feature 302569..303291
/locus_tag="Amet_0264"
/note="ethanolamine utilization protein; Region: eut_hyp;
TIGR02536"
/db_xref="CDD:162907"
gene 303319..303603
/locus_tag="Amet_0265"
/db_xref="GeneID:5310308"
CDS 303319..303603
/locus_tag="Amet_0265"
/note="PFAM: Ethanolamine utilization protein
EutN/carboxysome structural protein Ccml;
KEGG: dde:Dde_3273 ethanolamine utilization protein EutN"
/codon_start=1
/transl_table=11
/product="ethanolamine utilization protein
EutN/carboxysome structural protein Ccml"
/protein_id="YP_001318157.1"
/db_xref="GI:150388108"
/db_xref="InterPro:IPR004992"
/db_xref="GeneID:5310308"
/translation="MIIGKVIGNVWATRKDETLNGLKLLVIESIDYGRNQRGESFVAV
DGVGAGIGERVLVVKGNAARKALQKEGAAVDATIVGIIDEVEVTLQNNSE"
misc_feature 303319..303567
/locus_tag="Amet_0265"
/note="Ethanolamine utilisation protein and carboxysome
structural protein domain family; Region: EutN_CcmL;
cd01614"
/db_xref="CDD:133473"
misc_feature order(303319..303321,303325..303327,303337..303345,
303349..303360,303442..303444,303457..303459,
303490..303492,303508..303510,303538..303546,
303553..303555,303559..303561,303565..303567)
/locus_tag="Amet_0265"
/note="Hexamer/Pentamer interface [polypeptide binding];
other site"
/db_xref="CDD:133473"
misc_feature order(303322..303324,303400..303402,303409..303411,
303436..303438,303508..303510,303526..303528,
303541..303543)
/locus_tag="Amet_0265"
/note="central pore; other site"
/db_xref="CDD:133473"
gene 303615..304961
/locus_tag="Amet_0266"
/db_xref="GeneID:5310309"
CDS 303615..304961
/locus_tag="Amet_0266"
/note="PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein; Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit;
KEGG: lmf:LMOf2365_1149 PduS protein"
/codon_start=1
/transl_table=11
/product="respiratory-chain NADH dehydrogenase
domain-containing protein"
/protein_id="YP_001318158.1"
/db_xref="GI:150388109"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR011538"
/db_xref="GeneID:5310309"
/translation="MDILEKIFEAGVVGAGGAGFPTHIKLDGVAEYLLVNAVECEPLL
ETDKFITRHKSEEIIKAMEIMGNHIQAKEMVIGLKKKNTKEIQALREAIQCLKSKVTL
HLVENFYPAGDEQMLVYEITKRQVPPGGIPKDVGVVVCNVGTVVNIYEALNEKPVTHK
LVTILGEVKNPSMVYAPIGTPIEKCIEMVGGPTIQAYRIVLGGPMMGRVIEKSQLNQE
VVTKTTGGIIVLPEEHFMLRDKQQDLTQMINRSRSTCIQCSLCTDLCPRNLIGHPLRP
HRIMRTLSGDKEQYGVLKEALLCCECGVCEVYACPMGQTPKNINVEIKNLLRQEGIRY
SDTSVKNEVNGMREYRKVPAERLLARLELSGYADQVKDGYCSIEPHRVKIPLKQHIGK
PATPIVEVGSLVEKGQLIARVNAGDLGANIHASMQGVVSEINEFIWIEAGEKAVIQ"
misc_feature 303672..304016
/locus_tag="Amet_0266"
/note="Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Region: Complex1_51K; pfam01512"
/db_xref="CDD:201835"
misc_feature 304095..304241
/locus_tag="Amet_0266"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature 304377..304553
/locus_tag="Amet_0266"
/note="4Fe-4S dicluster domain; Region: Fer4_17;
pfam13534"
/db_xref="CDD:205712"
misc_feature <304749..>304913
/locus_tag="Amet_0266"
/note="RnfC Barrel sandwich hybrid domain; Region: RnfC_N;
pfam13375"
/db_xref="CDD:205554"
gene 304958..305506
/locus_tag="Amet_0267"
/db_xref="GeneID:5310310"
CDS 304958..305506
/locus_tag="Amet_0267"
/note="PFAM: microcompartments protein;
KEGG: maq:Maqu_1244 microcompartments protein"
/codon_start=1
/transl_table=11
/product="microcompartments protein"
/protein_id="YP_001318159.1"
/db_xref="GI:150388110"
/db_xref="InterPro:IPR000249"
/db_xref="GeneID:5310310"
/translation="MIKTIGLIELNSIAKGIETGDAMVKTANVELLKAHSVCPGKYIL
LICGDVGAVETAIETGIKIGGGYVVDHLILPSIHPQLIDAIHGTNSVQEVSAIGVLEF
FNIATSIVAADAAAKAAAVTLMEIRLGLSIGGKSFVTLCGDVSSVQEAVEAGATIGKE
KGMLVEKCVIPSPRKELFEKLL"
misc_feature 304958..305500
/locus_tag="Amet_0267"
/note="PduT-like ethanolamine utilization protein; Region:
eut_PduT; TIGR02526"
/db_xref="CDD:131578"
misc_feature 304967..305194
/locus_tag="Amet_0267"
/note="1,2-propanediol utilization protein T (PduT),
Bacterial Micro-Compartment (BMC) domain repeat 1; Region:
BMC_PduT_repeat1; cd07053"
/db_xref="CDD:132893"
misc_feature order(304982..304984,304991..304993,305018..305020,
305027..305032,305048..305050,305063..305065,
305078..305080)
/locus_tag="Amet_0267"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132893"
misc_feature 305063..305065
/locus_tag="Amet_0267"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132893"
misc_feature 305243..305476
/locus_tag="Amet_0267"
/note="1,2-propanediol utilization protein T (PduT),
Bacterial Micro-Compartment (BMC) domain repeat 2; Region:
BMC_PduT_repeat2; cd07054"
/db_xref="CDD:132894"
misc_feature order(305258..305260,305267..305269,305294..305296,
305303..305308,305324..305326,305339..305341,
305360..305362)
/locus_tag="Amet_0267"
/note="putative hexamer interface [polypeptide binding];
other site"
/db_xref="CDD:132894"
misc_feature 305339..305341
/locus_tag="Amet_0267"
/note="putative hexagonal pore; other site"
/db_xref="CDD:132894"
gene 305531..306634
/locus_tag="Amet_0268"
/db_xref="GeneID:5310311"
CDS 305531..306634
/locus_tag="Amet_0268"
/note="PFAM: Ethanolamine utilisation protein, EutH;
KEGG: lin:lin1150 similar to ethanolamine utilization
protein EutH - Escherichia coli"
/codon_start=1
/transl_table=11
/product="ethanolamine utilisation protein, EutH"
/protein_id="YP_001318160.1"
/db_xref="GI:150388111"
/db_xref="InterPro:IPR007441"
/db_xref="GeneID:5310311"
/translation="MNINEIIVYIMVGFMVLGALDKIIGNKYGLGEKFDEGMIAMGSL
AVAMVGVVSLAPVLATILEPMVVPVYTFLGADPAMFATTLLANDMGGYPLAMQLAQTQ
EAGLFAGLILGAMMGPTIVFTIPVALGIIKKEDHKYLATGVLAGMVTIPIGAFVGGVV
AGFDISMILSNLVPIILVSLLLSLGLWKMPEKMIKGFTVFGKGVVVVITIGLAAIIVE
TLTGFVVIPGMAPISDGIEIVGEIAIMLAGAFPMVYVVTKVFNKPLMKMGKLLGMGDV
AAAGMVATLANNIPMFGLMKDMDNRGKIINVAFAVSASFVLGDHLGFTAGVNQDMIFP
MVVGKMVGGVTAVMVAIFIANKSMSKEDAVKQH"
misc_feature 305531..306592
/locus_tag="Amet_0268"
/note="Ethanolamine utilisation protein, EutH; Region:
EutH; pfam04346"
/db_xref="CDD:202979"
gene 306753..307928
/locus_tag="Amet_0269"
/db_xref="GeneID:5310312"
CDS 306753..307928
/locus_tag="Amet_0269"
/note="PFAM: iron-containing alcohol dehydrogenase;
KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or
NADPH-dependent butanol dehydrogenase"
/codon_start=1
/transl_table=11
/product="iron-containing alcohol dehydrogenase"
/protein_id="YP_001318161.1"
/db_xref="GI:150388112"
/db_xref="InterPro:IPR001670"
/db_xref="GeneID:5310312"
/translation="MKNFKEMTEIVHGIDAIQYLERFKNKRACIVTDPTMVQLKVVDR
VTEIFDRNKIDYDVFSEVEPDPSFGVVYKGLNHIIKNKPELLIAVGGGSAIDAAKAIM
YFCIKIKESLLDTQEIPKPFFIAIPTTSGTGSEVTAYSVITDKEKNIKIPIIDSLMVP
DVAILDPIFTKTIPSHVTADTGIDVLTHCVEAYVSKDASDFTDALVEKATVQVFRYLP
VAYKDGSNMEAREKLHNASCMAGIAFTNAGLGINHSMAHSLGSHFKMSHGRSNAILMP
YIIAFNSKGQDKTGYNPAAVKYAELAKYIGLPNSTVETGVLGLIEAIKVMKIAMGIPA
TIKEAGVDRESFMNSLDEISAMALEDICTSSNPKKVSKEDIKNIYLEAYDRNSGLSF"
misc_feature 306753..307901
/locus_tag="Amet_0269"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; Region: EutG; COG1454"
/db_xref="CDD:31643"
misc_feature 306762..307892
/locus_tag="Amet_0269"
/note="1,3-propanediol dehydrogenase (PPD) catalyzes the
reduction of 3-hydroxypropionaldehyde (3-HPA) to
1,3-propanediol in glycerol metabolism; Region: PDD;
cd08180"
/db_xref="CDD:173939"
misc_feature order(306849..306851,307023..307031,307038..307040,
307047..307049,307134..307139,307143..307145,
307200..307205,307257..307259,307281..307283,
307302..307304,307314..307316,307509..307511,
307521..307523,307551..307553)
/locus_tag="Amet_0269"
/note="putative active site [active]"
/db_xref="CDD:173939"
misc_feature order(307302..307304,307314..307316,307509..307511,
307551..307553)
/locus_tag="Amet_0269"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173939"
gene 308423..308977
/locus_tag="Amet_0270"
/db_xref="GeneID:5310313"
CDS 308423..308977
/locus_tag="Amet_0270"
/note="KEGG: ctc:CTC01854 transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001318162.1"
/db_xref="GI:150388113"
/db_xref="GeneID:5310313"
/translation="MTQTTKKAMAASLKERLEKTTLQNITVKDIVKDCEINRQTFYYH
FQDSFALMEWIFETEGTKAISNNKTYDTWERGFLQAFQYVEQNKMLVLNAYHSMGREH
VERYLYSVVYRLLINVINEQAKGMNVPEDDKGFIAHFYKYVFVGLMLEWIHQGMKECP
KDIVDRLSKLITGDIHKALLKYEQ"
misc_feature 308435..308935
/locus_tag="Amet_0270"
/note="probable dihydroxyacetone kinase regulator; Region:
DHAK_reg; TIGR02366"
/db_xref="CDD:162826"
gene 309097..310761
/locus_tag="Amet_0271"
/db_xref="GeneID:5310314"
CDS 309097..310761
/locus_tag="Amet_0271"
/note="in group A Streptococci this protein was found to
cross react with anti myosin antibodies and may play a
role in rheumatic fever"
/codon_start=1
/transl_table=11
/product="myosin-cross-reactive antigen"
/protein_id="YP_001318163.1"
/db_xref="GI:150388114"
/db_xref="InterPro:IPR010354"
/db_xref="GeneID:5310314"
/translation="MCLNRIVYNGVTRKNLVNNILLEGITMKKDYGNKQVYFVGGGIA
SLAGAAYLIRDCHFKGENIHILEGMHILGGSNDGMGTPEDGFVCRGGRMLNEETYENF
WELFSSIPSIEHEGMSVTDEILAFDHAHPTHANARLINKDGEVLDVMSMGFDKEDQMA
MGKLLLTPEEKLDHLKISDWFGPHFFETNFWYMWQTTFAFQKWSSLFEFQRYMFRMIF
EFSRIQTLEGVTRTPYNQYESIILPMKAYLDDHGVDFTIKCTVTDLDFKEGEGITVTT
IHYQDQDGDGIIRLQEDDICIVTNGCMTDGATLGDLYTPAPLKPEHPISGDLWANIAA
KKSGLGDPKPFFGNAEETNWESFTVTMKGNKLLKMIEKYSRNVPGSGALMTFKDSSWL
MSMVVAAQPHFKAQTADETIFWGYALHTNKVGDYVKKPMRDCTGEEMLIELLHHLHFD
EEMDEIMKDVVNVIPCMMPYIISQFQPRAMTDRPQVVPEGSTNLAMISQFVEIPEDMV
FTEEFSVRAARIAVYTLMGLDKKICPVTPHRYDVRTLLKALNTCYR"
misc_feature 309175..310758
/locus_tag="Amet_0271"
/note="myosin-cross-reactive antigen; Provisional; Region:
PRK13977"
/db_xref="CDD:184432"
gene 310773..311063
/locus_tag="Amet_0272"
/db_xref="GeneID:5310315"
CDS 310773..311063
/locus_tag="Amet_0272"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318164.1"
/db_xref="GI:150388115"
/db_xref="GeneID:5310315"
/translation="MMNGSYNITMITPLGPEKGTILLNADEEKLSGILKIMGNEKEFT
GTAKGNSFEFSSELKKLITKIPFSAKGTVNGDTMEANIDSKFGQMKIIGKKA"
gene 311419..312342
/locus_tag="Amet_0273"
/db_xref="GeneID:5310316"
CDS 311419..312342
/locus_tag="Amet_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318165.1"
/db_xref="GI:150388116"
/db_xref="GeneID:5310316"
/translation="MRKKLGLMAIILMVSLALLGCGPKVGQGKDYGTYDEDTRVFILN
EKAFEDAEKVKMDKIQEKTPWQLYVAKFGFSEVVYLQVIRSKGKYSEIQFLDMEYQGY
MISDHEGEVVLDKVPRIMLDRDYEESLFAEMLQEGSTEGFEAFFQRAMYQWEKSSATY
DNSRFTLFHQQLEEDPQYGKVIAFYSEEGHRIAIDKTEDHQMGFLIGPYREEELALAK
AITSETEKEVQEMAVKDADVDKEYIVAKVDPADYADVIKKLTKSRKGQLEDYGVGDVN
GDGEVDYIILNSIPPIQWYWTKVNGRTVCIM"
gene 312330..312653
/locus_tag="Amet_0274"
/db_xref="GeneID:5310317"
CDS 312330..312653
/locus_tag="Amet_0274"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318166.1"
/db_xref="GI:150388117"
/db_xref="GeneID:5310317"
/translation="MYYVARGGNPKDLAYYKDAISVDTKNRLLVERQLIVSPIGGMGL
GNIQERYQWKTNKWQLVDVKVTPYNFKLETSKGVRDQTLKETLKNHKVVVNEKNVDKL
LMLSK"
gene 312825..312986
/locus_tag="Amet_0275"
/db_xref="GeneID:5310318"
CDS 312825..312986
/locus_tag="Amet_0275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318167.1"
/db_xref="GI:150388118"
/db_xref="GeneID:5310318"
/translation="MSIEEVEKVLGKPQEGSIDTTGETEDYILYNIKGRQVLFIIEEG
RVVVSIIKA"
gene 313020..313223
/locus_tag="Amet_0276"
/db_xref="GeneID:5310319"
CDS 313020..313223
/locus_tag="Amet_0276"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318168.1"
/db_xref="GI:150388119"
/db_xref="GeneID:5310319"
/translation="MNGQSKEGIVLRLAIVTYLIGTMMFLNGDSEAQDAYTKEVLPSV
MAVQGDNDGGLEISEGKYETLPN"
gene 313292..315139
/locus_tag="Amet_0277"
/db_xref="GeneID:5310320"
CDS 313292..315139
/locus_tag="Amet_0277"
/note="PFAM: NAD-dependent epimerase/dehydratase;
short-chain dehydrogenase/reductase SDR; 3-beta
hydroxysteroid dehydrogenase/isomerase; CoA-binding domain
protein; polysaccharide biosynthesis protein CapD;
dTDP-4-dehydrorhamnose reductase; Male sterility
C-terminal domain;
KEGG: cth:Cthe_2334 polysaccharide biosynthesis protein
CapD"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein CapD"
/protein_id="YP_001318169.1"
/db_xref="GI:150388120"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003781"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:5310320"
/translation="MKKRVLSGLLMMMDAAMINIAVVIAFYIRFDGAFSGRFAGQYIP
IYTDNLLTFTLIKIALFYAFGMYQNLWKYASIEAVFQIMIAAFVANTGVVSYMVLTQQ
GHLPRSIYLLMFILDMLLVGGIRFSYRATRGLREHGFIRRKNCKRVMIVGAGTAGAVV
IKELKIHDNLNYKPVAVIDDDESKLGSKINGVPVLGDRYHIKKVAEMKQVDEIIIAIP
SGFRQELKEIVEECSKTKCKLKILPGIGELIDGKVSMKKARDVEIEDLLGRDAINIDL
EEISEYLHNQVVLITGGGGSIGSELCRQIATFNPKKLLILDNYENNAYDIQNELRRKY
PELNLEVLIASVRERDRIEEIFGQYLPEVIFHAAAHKHVPLMEANPQEAIKNNIFGTK
NVAECADQFGAKRFVLISTDKAVNPTNIMGATKRVAEMLIQSIDLTSKTEFVAVRFGN
VLGSNGSVIPLFKRQIAEGGPVTVTHPEVTRYFMTIPEAVQLVIQAGSMASGGEIFVL
DMGEPVKIIDLARNLIRLSGMEPDVDMDIKVVGLRPGEKLYEELLMDEEGLESTKHDK
IFVGKPFFTDLKFLERELDILSDLLLLRDQEEVKEYMVKIVPTYHRETS"
misc_feature 313316..315025
/locus_tag="Amet_0277"
/note="Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG1086"
/db_xref="CDD:31283"
misc_feature 313727..313993
/locus_tag="Amet_0277"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 314141..314995
/locus_tag="Amet_0277"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature order(314165..314167,314171..314182,314240..314245,
314321..314329,314390..314398,314402..314404,
314447..314449,314516..314518,314564..314566,
314633..314644,314651..314656)
/locus_tag="Amet_0277"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature order(314243..314245,314249..314251,314261..314263,
314273..314275,314315..314326,314333..314335,
314342..314344,314396..314407,314414..314416,
314426..314428,314435..314437,314444..314446,
314654..314659,314672..314674)
/locus_tag="Amet_0277"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(314402..314404,314522..314530,314552..314554,
314636..314641,314657..314665,314672..314677,
314708..314716,314726..314728,314732..314734,
314837..314839,314918..314920,314927..314929)
/locus_tag="Amet_0277"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(314450..314452,314522..314524,314552..314554,
314564..314566)
/locus_tag="Amet_0277"
/note="active site"
/db_xref="CDD:187548"
gene 315467..315841
/locus_tag="Amet_0278"
/db_xref="GeneID:5310321"
CDS 315467..315841
/locus_tag="Amet_0278"
/note="PFAM: putative small multi-drug export;
KEGG: ctc:CTC02518 putative small multi-drug export
protein"
/codon_start=1
/transl_table=11
/product="putative small multi-drug export"
/protein_id="YP_001318170.1"
/db_xref="GI:150388121"
/db_xref="InterPro:IPR009577"
/db_xref="GeneID:5310321"
/translation="MSPLHATMVSFAGSMLPVPFLICAIRPVFDILKKTRLFGGMIHR
LSARTLRNSEKVKKYGFWGLILFVSIPLPGTGVWSGTLAAVLLDMRFKIAFPAILIGN
TIAAIVIMTLSYGALGAINLLP"
misc_feature 315467..315790
/locus_tag="Amet_0278"
/note="Putative small multi-drug export protein; Region:
Sm_multidrug_ex; pfam06695"
/db_xref="CDD:191585"
gene 316112..316532
/locus_tag="Amet_0279"
/pseudo
/db_xref="GeneID:5310322"
gene 316547..316711
/locus_tag="Amet_0280"
/db_xref="GeneID:5310323"
CDS 316547..316711
/locus_tag="Amet_0280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318171.1"
/db_xref="GI:150388122"
/db_xref="GeneID:5310323"
/translation="MNGNYNITILTPLGAEKGTIFLDADGEKLNGILKIMGKSIIIRN
AMQVQCIFIQ"
gene 317101..317580
/locus_tag="Amet_0281"
/db_xref="GeneID:5310324"
CDS 317101..317580
/locus_tag="Amet_0281"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318172.1"
/db_xref="GI:150388123"
/db_xref="GeneID:5310324"
/translation="MRKPMYIIVLQFVLILMILILTLTSLNIVEVENIYGMQPLNRDS
IHNVVVAYEGGLDVSNVISRIGERRESLRERIERSRDTYENLKSNNSREIIIKKRSKV
MERVDAEGDRVCVEDTEYNHMEGKNKKYLAYNPRYLIIKNQIIRGHAIGLRSPPVYV"
gene 317649..318815
/locus_tag="Amet_0282"
/db_xref="GeneID:5310325"
CDS 317649..318815
/locus_tag="Amet_0282"
/note="TIGRFAM: efflux transporter, RND family, MFP
subunit;
PFAM: secretion protein HlyD family protein;
KEGG: dsy:DSY3360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_001318173.1"
/db_xref="GI:150388124"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:5310325"
/translation="MKSYKKAILTIFLISTTFLYGCSQTAANEIEEVLKPVKVKVVET
QEYSKDMEISGNVKPAQLIRSGFKVAGVIDHIHVEEGDIVKEGQTLMQLDPYDYQLGV
NAARSQYQALQKQAESSINSGVNQAVAHLEFVNTQYDRMLKLYEEGAIPKKTLEEVET
QIVVAQNKYQESLDASPIAEAQLDQARTGLEAAESKIGDTILKSPITGTVIKRTFEVG
ETVAPGHPTIILGRLDKLEVEIGVPDGLVDNIRIGKNVDVFIYGLDKEIKGTIASIDT
TADLETRTFGVKVEIDNKENRIRPGMIAKVMMNTDKLTTIMIPTNAVMNDPDGAKIFV
YQEEGYVVERRVILGEIFGDEIQVIEGLENGEKIVIEGHYRLIDGDNVKVEVVE"
misc_feature 317790..318800
/locus_tag="Amet_0282"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 317850..317978
/locus_tag="Amet_0282"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 318249..318551
/locus_tag="Amet_0282"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 318815..321895
/locus_tag="Amet_0283"
/db_xref="GeneID:5310326"
CDS 318815..321895
/locus_tag="Amet_0283"
/note="PFAM: acriflavin resistance protein;
KEGG: swo:Swol_1118 hypothetical protein"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_001318174.1"
/db_xref="GI:150388125"
/db_xref="InterPro:IPR001036"
/db_xref="GeneID:5310326"
/translation="MTKWCLEHRSIVAVLSIFIFLSGIFVYTTMERQENPDVVAPGAT
VKTIYPGATPEDIEKFIVKPLESKIGEIPDVKMMLSYSLDNVGVIIIRLEDLSDEDIN
ETWNLLRQKVDEAELPEQAWDPEIDTDLIDTYGMLFTISGDRFEYKELKSIADELQEE
LEKMDGIAQVDINGYIDEEIHINLDLLRMKHFNIPVETIGMALKATNINIPGGSLKLR
GTNVPISTTGEYKNIHDIENTIVGMSEAGNVIYLKDVADIEQVEGDRDVFVGSNGEKA
LLMNLKYSDGENIVNIGEEVMTFLEEYKNTIAEDMNITVITDQAEYVEDAINLFEKNL
LSAISLVVVVVLISMGYRSALVVSSAIPITVMATFAFMRFTGIVLHQVSISSLIVCLG
LLVANAIVANDSMDLYLSKGMSRKEAIVYGINEVKIPILTSTLTTVASFLPLLLMEGV
AGKFVKSLPIMVTVALFSSFILSLTVVPAMGYTFLKGSQGEKKKSLFSDVSDFFLKQY
KFILKATLKMPIITILVAMGLLVFSTTMISSLGLQLFPFVERDQYVIDVTLIEGTSAE
KTKEVITEIEEMLKEDPSVDSFLSKVGDGIPKFYPSFVPNQIASNQAQFVVNGKVSEM
VALQDRIDQTVVGARVEVKQLENAVPVGLPIQVRVSGNDIDTLIRTSNEIKEILYTVE
EGQHVQDDYGHEVLKMVIDVNQDKASMVGITNYDIASTVRMAINGHEVIKMRPDDTDD
DIPVVLRIPTDEKNTVQVLDNIFVTSQFTGRNVPIQQIADIHSEFSLSRILRRDRDRT
ITVGLYPKPGYSAAEVLNVVEERMEGFEVPQGYMMEFGGESEDRTEAFESLIGPFFLA
AMLIYVILMFQFMDLRQPLIIMGTIPLSFIGVIWGLKITGYPLGFMALMGTVSLMGIV
VNNGIVLLDYINILAKSGIEAKEAVIEACATRLRPIMIGMITTVIGLVPMALIGGSLW
APLAYAIIFGLMVSSILTMLVIPSAFMLFRRRDKKGNGIIDEALTDKEIKETVS"
misc_feature 318815..321826
/locus_tag="Amet_0283"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
misc_feature <319868..320224
/locus_tag="Amet_0283"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:199094"
gene 322249..322836
/locus_tag="Amet_0284"
/db_xref="GeneID:5310327"
CDS 322249..322836
/locus_tag="Amet_0284"
/note="KEGG: cpf:CPF_0240 putative co-chaperone GrpE"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318175.1"
/db_xref="GI:150388126"
/db_xref="GeneID:5310327"
/translation="MIDVRKEIEKYEPIDLAQEEELQQDEFIEVLQHLQKSLNRFGKD
QYKTLGQVEEVLELLEASEEKDKVYGDLRKEAKKKDEEIDALLLAIIMVTDALEDLYY
YTVKNNEGSWAEQLSLLWEKLGQKLSYYGIVRIGEEGTTFSSHHGIAEGISKDANRSH
GEIVEVIQLGYVYRGRVLRKARVIVNENEERVKYE"
misc_feature <322504..322803
/locus_tag="Amet_0284"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cl03075"
/db_xref="CDD:213109"
misc_feature order(322678..322680,322687..322701,322747..322749,
322774..322776,322786..322788)
/locus_tag="Amet_0284"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene 322833..324542
/locus_tag="Amet_0285"
/db_xref="GeneID:5310328"
CDS 322833..324542
/locus_tag="Amet_0285"
/EC_number="1.3.1.74"
/note="PFAM: Heat shock protein 70;
KEGG: cno:NT01CX_1453 DNAk protein"
/codon_start=1
/transl_table=11
/product="2-alkenal reductase"
/protein_id="YP_001318176.1"
/db_xref="GI:150388127"
/db_xref="InterPro:IPR001023"
/db_xref="InterPro:IPR013126"
/db_xref="GeneID:5310328"
/translation="MSKIIGIDLGTSTSEVGIFETGKPIVIGNHLNEKITPSVVGLGE
EGQLIIGRDAKDQMLFKPEDTVMEVKRLMGSREKVKMGGKEYRPQEMSSFILKYLKEC
AEAYLEEEVLRAVITVPAYFTDEQRRATVEAGGLAGLKVERIINEPTAAALAYGIDHM
DENQHILVYDLGGGTLDVTVLEMFEGVLEVKASSGNNQLGGKDFDQKLIDYLCDRFFE
QYHIDLRSDLRAMAKLKKSAEECKITLSGHEAYHVLIPFIAEKEGNPVSLEETITRQV
FESLIEEIVQSTLKPITIALKDAKLTSKDLDLILMVGGSTRVPLVKSVVDHHLGQGSQ
SLVDPDLAVVTGAAIQAGMINEDLSPETDIVITDVCPYTLGVETMDFIMGMPLEDVYD
VIIPRNTTIPVMREKIYTTVSDDQEMVEIIVYQGDYEKASLNNLLGKFELSGIPPAKA
STEKIKIRFTYDVNGILQVEGMIVSTGKQAQITIDTTGVEMEQEVDLEGWKKASMAKK
YRALIRKGEKFLEEEEVVFVAELEGILKKFKRALILEEGKERLEELEEELLELLYDME
EEE"
misc_feature 322836..323879
/locus_tag="Amet_0285"
/note="MreB/Mbl protein; Region: MreB_Mbl; pfam06723"
/db_xref="CDD:115385"
misc_feature 322845..323888
/locus_tag="Amet_0285"
/note="Nucleotide-binding domain of the HSP70 family;
Region: HSP70_NBD; cd10170"
/db_xref="CDD:212667"
misc_feature order(322854..322856,322860..322871,323040..323042,
323187..323189,323271..323273,323340..323357,
323361..323363,323433..323438,323547..323549,
323556..323561,323769..323777,323781..323786,
323850..323852)
/locus_tag="Amet_0285"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212667"
misc_feature order(322923..322925,322974..322976,322986..322988,
322995..323000,323145..323150,323517..323519,
323526..323531,323538..323540,323550..323552,
323592..323594,323598..323603)
/locus_tag="Amet_0285"
/note="putative NEF/HSP70 interaction site [polypeptide
binding]; other site"
/db_xref="CDD:212667"
misc_feature order(323202..323207,323211..323216,323259..323264,
323268..323270,323394..323405)
/locus_tag="Amet_0285"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212667"
gene 324542..325096
/locus_tag="Amet_0286"
/db_xref="GeneID:5310329"
CDS 324542..325096
/locus_tag="Amet_0286"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: cno:NT01CX_1454 conserved protein, putative"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318177.1"
/db_xref="GI:150388128"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:5310329"
/translation="MLQDLANYYFHQGLRLAKENHITKALEQLKKATALQGENWQALN
LQGLCFYELGDFSKAKGAWKRSLTCKNQENIASHYLGEMEQGDFEDLCKEYNQALMLA
KLKKYKKAIKILNSKEFASIKITSFQNLLGLCYLAQGKKVKALHVWHQALKIDIDNPY
TLRYIQESLGNLEEKSWFAKWFAG"
misc_feature 324551..324742
/locus_tag="Amet_0286"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 324566..324832
/locus_tag="Amet_0286"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature order(324569..324574,324581..324586,324671..324676,
324680..324685,324692..324697,324773..324778,
324785..324790,324791..324796)
/locus_tag="Amet_0286"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(324578..324580,324614..324616,324626..324628,
324635..324637,324680..324682,324716..324718,
324728..324730,324737..324739,324782..324784,
324812..324814,324824..324826)
/locus_tag="Amet_0286"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 325122..326498
/locus_tag="Amet_0287"
/db_xref="GeneID:5310330"
CDS 325122..326498
/locus_tag="Amet_0287"
/note="PFAM: TPR repeat-containing protein; heat shock
protein DnaJ domain protein; SEC-C motif domain protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: cno:NT01CX_1455 TPR domain protein"
/codon_start=1
/transl_table=11
/product="heat shock protein DnaJ domain-containing
protein"
/protein_id="YP_001318178.1"
/db_xref="GI:150388129"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR001623"
/db_xref="InterPro:IPR004027"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:5310330"
/translation="MKNYYETLNVDLKASPIEIKRGYFSLVRKYPSDRFPQEFMDIRE
AYEALSNEKTREEYDHMMEMSAWDREFFEKSRQLVQAGETKKAIKILEFILERQFDSS
LVQGLLAEAYLCNGNSGKAIKILEKLVEEHPGNAGFKGHLAHAYIERGWHKKAIKAYE
DALEIDEDNLSLWLGLSKAYAAGQWMSKAKSVLLRALEKGKDKDWDYITLYLTLIHIE
LAMGDLDEMKKSVKKLSKASLEKEESREHIGWILSQLSQLLLGNGFMEEAMVLLEEAE
VLLPNNEEIQMVRKEVQSFFDLEKEFEKLMLDGLIEEDIRNLMELEVLPREMLGLEED
HRKDLVFMIEYRILEEIHLFRKSINRLKEKYPRIYEKKANFFEGAMDPKRRGKMARSY
EKQGKRMHRIIQEMAMNFEQNYEDDDDEFLGYSEYQEPHVREEPKIGRNEPCPCGSGK
KYKKCCGI"
misc_feature 325128..325274
/locus_tag="Amet_0287"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(325212..325220,325236..325241,325248..325253)
/locus_tag="Amet_0287"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 325335..325529
/locus_tag="Amet_0287"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:205610"
misc_feature 325443..325727
/locus_tag="Amet_0287"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature 325443..325628
/locus_tag="Amet_0287"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:205610"
misc_feature order(325446..325448,325482..325484,325494..325496,
325503..325505,325548..325550,325584..325586,
325596..325598,325605..325607,325650..325652,
325686..325688,325698..325700,325707..325709)
/locus_tag="Amet_0287"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature order(325449..325454,325539..325544,325548..325553,
325560..325565,325641..325646,325653..325658,
325665..325670)
/locus_tag="Amet_0287"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature 325545..325715
/locus_tag="Amet_0287"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
gene 326809..327459
/locus_tag="Amet_0288"
/db_xref="GeneID:5310331"
CDS 326809..327459
/locus_tag="Amet_0288"
/note="PFAM: response regulator receiver; transcriptional
regulator domain protein;
KEGG: cac:CAC1506 response regulator (CheY-like receiver
domain and a HTH)"
/codon_start=1
/transl_table=11
/product="two component transcriptional regulator"
/protein_id="YP_001318179.1"
/db_xref="GI:150388130"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR001867"
/db_xref="GeneID:5310331"
/translation="MSVILIIEDEDPIRELIKLNLVMAGYETLEACDGEEGLQYLNNE
KIDLVLLDVMLPQQDGYTLLPKILKKNIPTIMLTAKDRLKDKVKGLEMGADDYVTKPF
EAMELLARVKCVLRRSDKEKTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLI
ENKGNVMSRDRLLELVWGYEFEGNTRTVDMHIQRLRNKIGADKIKTIYKVGYRMEG"
misc_feature 326818..327453
/locus_tag="Amet_0288"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 326821..327153
/locus_tag="Amet_0288"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(326830..326835,326962..326964,326986..326988,
327040..327042,327097..327099,327106..327111)
/locus_tag="Amet_0288"
/note="active site"
/db_xref="CDD:29071"
misc_feature 326962..326964
/locus_tag="Amet_0288"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(326971..326976,326980..326988)
/locus_tag="Amet_0288"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 327106..327114
/locus_tag="Amet_0288"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 327181..327450
/locus_tag="Amet_0288"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(327253..327255,327310..327315,327367..327369,
327376..327378,327400..327405,327424..327426,
327439..327441)
/locus_tag="Amet_0288"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 327463..328890
/locus_tag="Amet_0289"
/db_xref="GeneID:5310332"
CDS 327463..328890
/locus_tag="Amet_0289"
/note="PFAM: ATP-binding region, ATPase domain protein;
histidine kinase, HAMP region domain protein; histidine
kinase A domain protein;
KEGG: cac:CAC1507 sensory transduction histidine kinase
(with HAMP domain)"
/codon_start=1
/transl_table=11
/product="integral membrane sensor signal transduction
histidine kinase"
/protein_id="YP_001318180.1"
/db_xref="GI:150388131"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:5310332"
/translation="MKLGWKIFLLCVGIYVVSLTITGFVVSENTYTSLLKNEVEGTVE
EESNLHSTLAVYLLNNQRIAQEEIELKNYSKSMVDMINSDRNYLEIFDENLNLLATNA
PKAWFFSRKELDVALEGQKNFVLRRDEDELYLFVSNVLEIGEEKIVLSLIKDITHVDH
YRREQYLLFMRTGLMGLIFVALITWALSILLLKPFRELSSTAENIASGNYHVRAEVNR
TDEVGLLAEQFNIMAGEIEQKMGELKEEGQQQQRFIDNLTHELRTPLTSIIGYAEYLL
KAEYDSKTFNKGLSYIHSEGNRMLKLAKTLMDMILVRERSLQLEEEHVMSLLVMIQNI
MKVKAEKKGVILKVQGENLKISIDKELFKVAIINLVDNAINASQEGQTVTMGVEKTPQ
KISLYIKDEGKGMAEWELNRVIQPFYRVDKSRSRKDGGIGLGLAICYQIVKEHGAIFE
IESEIGKGTKIKVDFPQRVYKNFTS"
misc_feature 327904..328878
/locus_tag="Amet_0289"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 328033..328176
/locus_tag="Amet_0289"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(328033..328038,328045..328050,328054..328059,
328066..328071,328075..328077,328123..328128,
328132..328137,328144..328149,328153..328158,
328165..328170)
/locus_tag="Amet_0289"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 328204..328389
/locus_tag="Amet_0289"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(328219..328221,328231..328233,328243..328245,
328252..328254,328264..328266,328273..328275,
328324..328326,328336..328338,328345..328347,
328357..328359,328366..328368,328378..328380)
/locus_tag="Amet_0289"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 328237..328239
/locus_tag="Amet_0289"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 328555..328857
/locus_tag="Amet_0289"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(328564..328566,328576..328578,328585..328587,
328654..328656,328660..328662,328666..328668,
328672..328677,328756..328767,328813..328815,
328819..328821,328834..328839,328843..328845)
/locus_tag="Amet_0289"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 328576..328578
/locus_tag="Amet_0289"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(328666..328668,328672..328674,328756..328758,
328762..328764)
/locus_tag="Amet_0289"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 328965..329195
/locus_tag="Amet_0290"
/db_xref="GeneID:5310333"
CDS 328965..329195
/locus_tag="Amet_0290"
/note="KEGG: ptr:461291 splicing factor YT521-B"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318181.1"
/db_xref="GI:150388132"
/db_xref="GeneID:5310333"
/translation="MKKILALSLVLLLSLTVMVACNAEEETITEQEGTEIELEIEEEV
DVDAEVDVDVEEDVDAEEDADAEEEEEEEEKS"
gene 329302..331092
/locus_tag="Amet_0291"
/db_xref="GeneID:5310334"
CDS 329302..331092
/locus_tag="Amet_0291"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318182.1"
/db_xref="GI:150388133"
/db_xref="GeneID:5310334"
/translation="MKRIVFSLCFIVILMGCSQQEIKEGQVYVVQDENYDEEQTGDIL
NIEGRIPFQKYVNQNIVDLQDSNRILLTIAPSGEEIYLMERMETTELSPVIKGDVREK
VRIIREDMVTKDQVIVAKDIPFVSKVRWNTEGNIVSFGGGDRLTIYDAKDGSIIMEGK
LAQDPITGFFWAPTDENKIYTEQPNLANGSIYYLASQRKVEAYETREETYYKGKLNSD
YYYGTKWDLANGNIKTVILDKQGKTIKVIIPGIFRDSYEKSLVVVGEEGFGLSYVEDI
NNPEDAMDLTKEYVYDVKFIADGKIAYTTKAEDIDDNLFYLHIVSNNGSELKRAKVYG
ANIALLPDGNSGYISGPVWQKVDFLENKLFEVDLEHDVELDESKEIYSTIRGAMMTLY
DFQMKGEEDRNRIEKYFKNTRSPEQWAYFDVTNMLQENDNRSSRRDYAMRIDLKSYVM
DYADGSASVVIDVNIKNSYGRDITTDYALELSKSEERWYVTGFSTFPHAVEREEIEKI
LQETIEKIRIGKLFPGKLEDKEITLGQVQFWLSRMPRLAPNIESANAVKVFLQVNQEG
REEVYKLVLEKVEQNLWQPTKLTQEDLSSL"
gene 331125..331505
/locus_tag="Amet_0292"
/db_xref="GeneID:5310335"
CDS 331125..331505
/locus_tag="Amet_0292"
/note="KEGG: ttj:TTHA0227 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318183.1"
/db_xref="GI:150388134"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:5310335"
/translation="MNNFPSIDEVHDILDEIAQEIPDVFFKELNQGILLLPEHKLHFE
SRTRDKLYIMGEYRKSITGRQIIMYYGSFERLYKGMSKERLYEKLKDTLLHEFTHHLE
SLAGEVGLEVKDSKDLRKYRNRLT"
misc_feature 331140..331478
/locus_tag="Amet_0292"
/note="Minimal MMP-like domain found in Thermus
thermophilus hypothetical protein TTHA0227 and similar
proteins; Region: MMP_TTHA0227; cd12953"
/db_xref="CDD:240573"
gene 331742..333619
/locus_tag="Amet_0293"
/db_xref="GeneID:5310336"
CDS 331742..333619
/locus_tag="Amet_0293"
/note="PFAM: S-layer domain protein;
KEGG: swo:Swol_0317 hypothetical protein"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318184.1"
/db_xref="GI:150388135"
/db_xref="InterPro:IPR001119"
/db_xref="InterPro:IPR002048"
/db_xref="GeneID:5310336"
/translation="MKLVNHKKRSLAMLLVMAMVFTVLPAMAPMVAEATVNGSAPYIT
VTGDVYDGDEYQTVTEGVYRTGSDLQVMSGLTFTVSESVYLRATEGPSSVVASVYKND
ISVTEAVYVQSTDEISIKGNANSKVTVELSRTLDFSSPVATFTFTVDLADVDDVDNGD
DVDNGDDVDNGDDVDNGDDVDNGDDVDNGDDVDNGDDVDNGEVIEAPELTFVSKDRNS
VRLQVYSKVEGARFEFFTGETKRTATFVTEESGKYQYTITGLSANTSYTFTARVIVDG
VKSAHSNEVTVTTDRTSSSGGGGGGGGGSTSTSTSTTSVRASQSATLRGQGVVINFPA
NAMDNDFEVKIAKISNVSRLPMPSNMKFAGDVFEITKNRSGDFKDDVTLTLPFDKAKV
DFDKYDVSLFWLNERTDKWIELDNIKVNKSIGNVSGEVDHFTKFAVLAIDQDAAEEEK
EKPVRVFADVTGHWAETHINNLVKTGAIGGYPDGTFKPDNNITRAEFATVLVKALDLE
VKSGKVFIDTADHWAKDYIATAYANGIISGYDANTFGANDFITREQKAVMIVKAAALE
NATMSKSYVDAESVSDWAKTAVETANAKGIINGYPDGTFRPKNNATRAEAATVIAKII
H"
misc_feature 332366..332608
/locus_tag="Amet_0293"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(332525..332527,332570..332572)
/locus_tag="Amet_0293"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature order(332573..332578,332582..332587)
/locus_tag="Amet_0293"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature 333110..333235
/locus_tag="Amet_0293"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 333284..333403
/locus_tag="Amet_0293"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 333458..333592
/locus_tag="Amet_0293"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 334166..334720
/locus_tag="Amet_0294"
/db_xref="GeneID:5310337"
CDS 334166..334720
/locus_tag="Amet_0294"
/note="KEGG: ctc:CTC01854 transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001318185.1"
/db_xref="GI:150388136"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:5310337"
/translation="MTQKTKEAMAASLKERLRKTTLQNITVKDIVKDCEVNRQTFYYH
FQDSFALLEWIFETEGTKAISTNKTYDTWEQGFLRVFQYVEQNKMLVHNAYHSMGREH
VERYLYSVVYRLLINVINEQAKGMNVPEDDKGFIADFYKYAFVGIMLEWIHQGMKERP
EDIVDRLSKLITGAIHRALLKYEQ"
misc_feature 334178..334678
/locus_tag="Amet_0294"
/note="probable dihydroxyacetone kinase regulator; Region:
DHAK_reg; TIGR02366"
/db_xref="CDD:162826"
gene 334816..335745
/locus_tag="Amet_0295"
/db_xref="GeneID:5310338"
CDS 334816..335745
/locus_tag="Amet_0295"
/note="TIGRFAM: UTP-glucose-1-phosphate
uridylyltransferase;
PFAM: Nucleotidyl transferase;
KEGG: cno:NT01CX_1540 UTP-glucose-1-phosphate
uridylyltransferase"
/codon_start=1
/transl_table=11
/product="UTP-glucose-1-phosphate uridylyltransferase"
/protein_id="YP_001318186.1"
/db_xref="GI:150388137"
/db_xref="InterPro:IPR005771"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:5310338"
/translation="MMKVKKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTLQYIIEE
AVASGIEEILIITGRNKKSIEDHFDKSVELELELESKGKTELLEEVRKISDMVNIHYI
RQKEPKGLGHAIHCAKSFIGNEPFAVLLGDDIVDAPKPCLKQMIDAYNEYKTSILGVQ
EVPWEDVNKYGIVKGMHIEDRIYKVKDLIEKPAVNEAPSNVAILGRYIITPNIFEILE
NTPPGKGGEIQLTDALRVLAQKEAMYAYHFEGRRYDVGDKQGFLEATVEFALKREDLR
EDFLAYLQKITRREVEREQTQVQVQEVAMTDKE"
misc_feature 334828..335628
/locus_tag="Amet_0295"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature 334831..335673
/locus_tag="Amet_0295"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature order(334843..334854,334894..334899,335125..335127,
335134..335145,335203..335205,335209..335214,
335323..335328,335383..335388,335422..335424,
335506..335508)
/locus_tag="Amet_0295"
/note="active site"
/db_xref="CDD:133021"
misc_feature order(334855..334857,334864..334878,334882..334890,
334900..334908,334912..334920,334930..334932,
335002..335004,335008..335016,335020..335022,
335032..335037,335119..335124,335128..335130,
335134..335136,335320..335322,335494..335496,
335566..335568,335584..335592,335596..335604,
335608..335616,335623..335628)
/locus_tag="Amet_0295"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene 335950..336792
/locus_tag="Amet_0296"
/db_xref="GeneID:5310339"
CDS 335950..336792
/locus_tag="Amet_0296"
/note="PFAM: MotA/TolQ/ExbB proton channel;
KEGG: bld:BLi03124 similar to flagellar motor apparatus;
RBL03008"
/codon_start=1
/transl_table=11
/product="MotA/TolQ/ExbB proton channel"
/protein_id="YP_001318187.1"
/db_xref="GI:150388138"
/db_xref="InterPro:IPR002898"
/db_xref="GeneID:5310339"
/translation="MKWDMEKKFDFKGRNMKIVVIAVLMIVVAQALIGTMSLSIVFNV
TALQIIFAGILISVFMSFPLEILTNTVKLVKESFTNDINYDETIHKIYELTVKIKKKG
VLSIQAEIDQEENTFLRDAMILLNDYKRSDAIEDILDNDIESRQMNLYKCHNVLNMIA
HIAPAFGLIGTLVGMIGLLANISIPDQIMNNMAAALVSTLYGSLIANIIAVPLMARLK
EHIEQRVLQYRIIKEGILLIAQEDTARNVFDKMNVMLKEENRLIYPRRAQEERKHESY
EFKV"
misc_feature 336058..336669
/locus_tag="Amet_0296"
/note="MotA/TolQ/ExbB proton channel family; Region:
MotA_ExbB; cl00568"
/db_xref="CDD:212236"
gene 336767..337480
/locus_tag="Amet_0297"
/db_xref="GeneID:5310340"
CDS 336767..337480
/locus_tag="Amet_0297"
/note="PFAM: OmpA/MotB domain protein;
KEGG: bsu:BG10366 similar to motility protein"
/codon_start=1
/transl_table=11
/product="OmpA/MotB domain-containing protein"
/protein_id="YP_001318188.1"
/db_xref="GI:150388139"
/db_xref="InterPro:IPR006665"
/db_xref="GeneID:5310340"
/translation="MKAMSSKYDGKKYETEYSNSWLITYSDMITIVLCFFIIFFTFTA
EEASVLYHVKEALTSEVADLSDENQRLLEEKESLAALLFGLEDIELDLVQSQETFIRF
LRENHLLDRVDVIEEERGLVIRFRDSVLFGSGQARISQEGYMLLDHVTAKLRTIDNAI
VIEGFTDNIPIQTNEFPSNWELSVARAIGVARYMIDEEYIEESRISVSGFGEQQPIDS
NETNEGRANNRRIEITILH"
misc_feature 336785..>336868
/locus_tag="Amet_0297"
/note="Membrane MotB of proton-channel complex MotA/MotB;
Region: MotB_plug; pfam13677"
/db_xref="CDD:205853"
misc_feature 336797..337474
/locus_tag="Amet_0297"
/note="Flagellar motor protein [Cell motility and
secretion]; Region: MotB; COG1360"
/db_xref="CDD:31551"
misc_feature 337142..337471
/locus_tag="Amet_0297"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(337163..337168,337262..337267,337286..337288,
337298..337303,337310..337312,337439..337441,
337451..337453)
/locus_tag="Amet_0297"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 337706..338617
/locus_tag="Amet_0298"
/db_xref="GeneID:5310341"
CDS 337706..338617
/locus_tag="Amet_0298"
/note="PFAM: S-layer domain protein;
KEGG: cth:Cthe_2809 glycoside hydrolase, family 16"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318189.1"
/db_xref="GI:150388140"
/db_xref="InterPro:IPR001119"
/db_xref="GeneID:5310341"
/translation="MKSNNVKRKAIGAVVAGSLVVSSLSGVFAQNLTDIDGHWAKERI
QDWVAAELLSGYPDGSFKPDQSISRAEFMSLVNKSFDYTVEKEGSFSDVSKDEWFASV
VAVANGAGYISGYDDETMKPNQPISRQEVATIITKIMKLEENVEQAAEFTDHEGIAQW
SKGFIGAVSAARYMNGYPDGSFQAKKEMTRAEAVAALDKVISELSDGEGEVTDQEAVE
AAAELMTDEVTYNAEANALTINFSEAPDAGVEFATRVGNGIGEFQTTTGQTVTLKVYG
DTKVGDIDIFIRKGEATSVVESVYSRD"
misc_feature 337796..337924
/locus_tag="Amet_0298"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 337970..338101
/locus_tag="Amet_0298"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 338156..338287
/locus_tag="Amet_0298"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 338697..339359
/locus_tag="Amet_0299"
/db_xref="GeneID:5310342"
CDS 338697..339359
/locus_tag="Amet_0299"
/note="PFAM: TPR repeat-containing protein;
SMART: Tetratricopeptide domain protein;
KEGG: ter:Tery_4945 TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318190.1"
/db_xref="GI:150388141"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="GeneID:5310342"
/translation="MNWKIKTAMILTLAMVLMLSGCSLGEKEDPSVAKANANYKNALQ
LIKADQLAEAKGILEESIELNATEGIYHIALGNIYLREDEKETALSNFVRSIEKTPKY
REAYNNAVGLYMLNNQYEQALTTVQEGLAIAPEDLELTFKKAQIYFIQDKNEEAIEGF
QFLIEADSETYFEAYRFLGLSQLNLDLKEEAKMNLEKYIEVAPEAVPVRESIENILST
LK"
misc_feature 338910..339098
/locus_tag="Amet_0299"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 338913..339203
/locus_tag="Amet_0299"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(338913..338918,338925..338930,339015..339020,
339024..339029,339036..339041,339117..339122,
339129..339134,339141..339146)
/locus_tag="Amet_0299"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(338922..338924,338958..338960,338970..338972,
338979..338981,339024..339026,339060..339062,
339072..339074,339081..339083,339126..339128,
339162..339164,339174..339176,339183..339185)
/locus_tag="Amet_0299"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 339006..339311
/locus_tag="Amet_0299"
/note="tol-pal system protein YbgF; Region: tol_pal_ybgF;
TIGR02795"
/db_xref="CDD:188247"
gene 339512..339778
/locus_tag="Amet_0300"
/db_xref="GeneID:5310343"
CDS 339512..339778
/locus_tag="Amet_0300"
/note="KEGG: cch:Cag_0270 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318191.1"
/db_xref="GI:150388142"
/db_xref="GeneID:5310343"
/translation="MPTICMFYGIIIRMFCAPGEHNPPHFHAYYGEYKATVDIRTCEL
IEGNLPKKQLKLVLAWAELRQEDLLANWTLAMNSELPFKVEPLK"
misc_feature 339536..339727
/locus_tag="Amet_0300"
/note="Domain of unknown function (DUF4160); Region:
DUF4160; pfam13711"
/db_xref="CDD:205886"
gene 339792..340037
/locus_tag="Amet_0301"
/db_xref="GeneID:5310344"
CDS 339792..340037
/locus_tag="Amet_0301"
/note="KEGG: cch:Cag_0271 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318192.1"
/db_xref="GI:150388143"
/db_xref="GeneID:5310344"
/translation="MYLAIMNVKPLIDYQLLLTFENGEKRIFDMKPYLDKGIFKELKD
EKKFKSVRVSFDSIEWCNQADIDPEVLYEKSVKYSLQ"
misc_feature 339804..340016
/locus_tag="Amet_0301"
/note="Protein of unknown function (DUF2442); Region:
DUF2442; pfam10387"
/db_xref="CDD:204470"
gene 340273..341262
/locus_tag="Amet_0302"
/db_xref="GeneID:5310345"
CDS 340273..341262
/locus_tag="Amet_0302"
/note="TIGRFAM: UDP-glucose 4-epimerase;
PFAM: NAD-dependent epimerase/dehydratase; short-chain
dehydrogenase/reductase SDR; 3-beta hydroxysteroid
dehydrogenase/isomerase; polysaccharide biosynthesis
protein CapD; dTDP-4-dehydrorhamnose reductase; Male
sterility C-terminal domain;
KEGG: tte:TTE1927 UDP-glucose 4-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-glucose 4-epimerase"
/protein_id="YP_001318193.1"
/db_xref="GI:150388144"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR005886"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:5310345"
/translation="MAVLVCGGAGYIGSHTVLALLKEKVEVIVLDNLSKGHREALPSE
VKLYQGDLRDEKLLAGIFIDNEIDGVIHFAADSLVGESVEAPLKYYENNVYGSLSLLK
AMAKHGVKKIVFSSTAAVYGEPREVPIVEESLTLPTNPYGETKLAVERMLKWAQEAHG
IEFVVLRYFNAAGAEEEGTIGEDHSPESHLIPLVLEVALGKREKIYIFGEDYPTEDGT
CVRDYIHVMDLADAHLLALKRLQRGEGSGTYNLGNGKGFSVQEVIETARRITGKPIPA
EMAPRRAGDPAVLIASSDKARKELGWTSQYDSLEKIIGTAWKWHHSNPYGFKS"
misc_feature 340273..341253
/locus_tag="Amet_0302"
/note="UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane]; Region: GalE; COG1087"
/db_xref="CDD:31284"
misc_feature 340276..341235
/locus_tag="Amet_0302"
/note="UDP-glucose 4 epimerase, subgroup 1, extended (e)
SDRs; Region: UDP_G4E_1_SDR_e; cd05247"
/db_xref="CDD:187558"
misc_feature order(340291..340293,340297..340308,340363..340380,
340420..340428,340489..340497,340501..340503,
340546..340548,340615..340623,340693..340695,
340705..340707,340774..340779,340783..340785)
/locus_tag="Amet_0302"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187558"
misc_feature order(340519..340521,340525..340533,340540..340545,
340552..340557,340564..340569,340573..340578,
340585..340587,340690..340692,340699..340701,
340711..340713,340720..340725,340729..340737)
/locus_tag="Amet_0302"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187558"
misc_feature order(340549..340551,340621..340623,340693..340695,
340705..340707)
/locus_tag="Amet_0302"
/note="active site"
/db_xref="CDD:187558"
misc_feature order(340621..340629,340693..340695,340774..340782,
340834..340842,340885..340896,340927..340929,
340933..340935,340939..340941,341047..341049,
341116..341118,341125..341127)
/locus_tag="Amet_0302"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187558"
gene 341368..342798
/locus_tag="Amet_0303"
/db_xref="GeneID:5310346"
CDS 341368..342798
/locus_tag="Amet_0303"
/note="KEGG: mta:Moth_0665 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318194.1"
/db_xref="GI:150388145"
/db_xref="GeneID:5310346"
/translation="MAQKRIQRTVAGCYVVFLILTVIYGMFIRGPYLFKRPTVYLLTY
ALLGAALMIGVFYLLDRVPFLKDPRVFIPILGVITFVPRYIWVRLITTVPVYDFARFH
QYTQALIRGEYDSYLEIRNVFPHLSGYPLILSYVYRIFGDSVAVGKAFNLFCAVMTAV
IIYLIGKEIFGERGGRIAGLLFALWPTLIMYTPVLASEHIFLLLFLLALYLFLIYTKK
PLKGWELLRLLLIGVVMAFSHIVRPVASLLFPPMLVYLLFYQGVGNSLGAFVKDKLKI
MVLIILAFTLTMGALNWMYIDQIKVPLGKTAGGFNLYVGTDPERNGMWNPTAWEIIEE
YDHDFDRVHGEAQRRAIERIKEDPRAFVGLAERKFAIQWGTDDYGLYWSMLERYPETD
FGLWVDENKNEVNIFAQSYYMAIILLALLGCWRLLTKVPSHAVGFFAMIVLIFAAAHV
LIEVQSRYHHPISPFFIVTAVVGIEH"
misc_feature 341749..342225
/locus_tag="Amet_0303"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; pfam13231"
/db_xref="CDD:205412"
gene complement(342808..344016)
/locus_tag="Amet_0304"
/db_xref="GeneID:5310347"
CDS complement(342808..344016)
/locus_tag="Amet_0304"
/note="PFAM: transposase, IS4 family protein;
KEGG: sak:SAK_2050 IS10R, transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_001318195.1"
/db_xref="GI:150388146"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:5310347"
/translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR
LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWVLATNLPVEIR
TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNL
FTHGYALGKL"
misc_feature complement(343027..343746)
/locus_tag="Amet_0304"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
STS 342819..343895
/standard_name="H05L03.2"
/db_xref="UniSTS:311318"
gene complement(344019..344126)
/locus_tag="Amet_0305"
/pseudo
/db_xref="GeneID:5310348"
gene 344236..345126
/locus_tag="Amet_0306"
/db_xref="GeneID:5310349"
CDS 344236..345126
/locus_tag="Amet_0306"
/note="PFAM: glycosyl transferase, family 2;
KEGG: baa:BA_0542 glycosyl transferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001318196.1"
/db_xref="GI:150388147"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:5310349"
/translation="MKEKLISLVVPMYCENEVAKECYKRLKEVMKKHEIPYEMVFIND
GSTDETLSILEVIAAQDKKVKVISFARNFGHQIAVTAGIKRAQGDAVIVIDADLQDPP
ELIPEMIKLWEEGYHVVYGKRKKRQGETWFKLTTAKYFYRFLNSITEVDIPLDTGDFR
LMDRKVVDIFNNMPEKNRFIRGMVSWIGFKQTAIEYERQERFAGETKYPLKQMLKLAA
DGILSFSFKPVKWIEGTGIVIFLLGMLLLFFSGIYGLLVVIGGIQLFAIGIIGEYVVR
IYDEARARPIYTVEKEINFK"
misc_feature 344245..345114
/locus_tag="Amet_0306"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature 344257..344802
/locus_tag="Amet_0306"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature order(344266..344268,344272..344274,344524..344526)
/locus_tag="Amet_0306"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature order(344365..344367,344521..344526)
/locus_tag="Amet_0306"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature 344518..344526
/locus_tag="Amet_0306"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene 345154..345573
/locus_tag="Amet_0307"
/db_xref="GeneID:5310350"
CDS 345154..345573
/locus_tag="Amet_0307"
/note="PFAM: GtrA family protein;
KEGG: lmf:LMOf2365_2522 cell wall teichoic acid
glycosylation protein GtcA"
/codon_start=1
/transl_table=11
/product="GtrA family protein"
/protein_id="YP_001318197.1"
/db_xref="GI:150388148"
/db_xref="InterPro:IPR007267"
/db_xref="GeneID:5310350"
/translation="MLGNLKHYMNYLIFGVLTTAVNLVIYTILIRFGLHYLISTTIAF
ILAVSVAFYTNRKWVFDSDVKEQKGLMKEMSTFFVVRIGTYFFDLFGLILLIQLADMD
ELISKLIVNGGVIVLNYALSKWVVFKKPRPMTVGKNG"
misc_feature 345184..345534
/locus_tag="Amet_0307"
/note="GtrA-like protein; Region: GtrA; pfam04138"
/db_xref="CDD:202906"
gene 345761..346507
/locus_tag="Amet_0308"
/db_xref="GeneID:5310351"
CDS 345761..346507
/locus_tag="Amet_0308"
/note="KEGG: cth:Cthe_0240 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318198.1"
/db_xref="GI:150388149"
/db_xref="GeneID:5310351"
/translation="MIQEVFNRYEFKYVINMNQYKQVLKALKGRIEVDGNGDPDGFYK
ILSLYYDSDADTFFHETIDGTTFRQKLRLRAYNHVTMEDDVFLEVKQKHNGVVNKRRT
QMRVKDAYDFLKLGVDQKALQQYASSNKQILNEIHFLKEFHLLTPKILVSYDRQAFQG
IEEKDLRVTFDTNLRKQEFDLRIDGANLGTQFMGSDVSVLEVKVNDRIPLWLSRTLNE
CGCYRQSVSKYCIGYQQSLTAANSQKKQVG"
misc_feature 345782..346450
/locus_tag="Amet_0308"
/note="Polyphosphate(polyP) polymerase domain of yeast
vacuolar transport chaperone (VTC) proteins VTC-2, -3 and-
4, and similar proteins; Region: PolyPPase_VTC_like;
cd07750"
/db_xref="CDD:143622"
misc_feature order(345782..345784,345788..345790,346361..346363,
346367..346369)
/locus_tag="Amet_0308"
/note="putative metal binding residues [ion binding];
other site"
/db_xref="CDD:143622"
misc_feature order(345782..345784,345788..345790,345794..345796)
/locus_tag="Amet_0308"
/note="signature motif; other site"
/db_xref="CDD:143622"
misc_feature order(345785..345787,345947..345949,345956..345958,
346397..346399,346409..346411)
/locus_tag="Amet_0308"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143622"
misc_feature order(345794..345796,345905..345907,345941..345943,
345950..345952,345974..345976,345980..345982,
346028..346030,346034..346036,346049..346051,
346055..346057,346217..346219,346223..346225,
346259..346261,346361..346363,346367..346369,
346436..346447)
/locus_tag="Amet_0308"
/note="polyP binding site; other site"
/db_xref="CDD:143622"
misc_feature order(345794..345796,345905..345907,345974..345976,
345980..345982,346028..346030,346055..346057,
346217..346219,346223..346225,346271..346273,
346361..346363,346436..346447)
/locus_tag="Amet_0308"
/note="active site"
/db_xref="CDD:143622"
misc_feature order(345794..345796,345905..345907,345974..345976,
345980..345982,346028..346030,346055..346057,
346217..346219,346223..346225,346271..346273,
346361..346363,346436..346444)
/locus_tag="Amet_0308"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143622"
misc_feature order(345905..345907,345974..345976,346028..346030,
346439..346447)
/locus_tag="Amet_0308"
/note="acceptor-phosphate pocket; other site"
/db_xref="CDD:143622"
gene 346519..347214
/locus_tag="Amet_0309"
/db_xref="GeneID:5310352"
CDS 346519..347214
/locus_tag="Amet_0309"
/note="KEGG: cth:Cthe_0730 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318199.1"
/db_xref="GI:150388150"
/db_xref="GeneID:5310352"
/translation="MEQLFEEAIQLNGVTPMQMVINVIVTMIVSLCVGLIITYTYRKT
HKGANYSQSFVHTLLIMNIVISVVIMVIGSNIARAFSLAGALSIVRFRSAIRDPKDVA
FIFFAMAVGLATGTGNYLVAIVFAIVVSFVIYGLYTFNYGDRGQVNKILKITVPENLN
YEGLFDDLFQEHLIDYSLASVKTTNLGTMFELTYFIRSKEEQQDKELIDGIRCRNANL
RVAILLNAQDYYE"
gene 347310..349040
/locus_tag="Amet_0310"
/db_xref="GeneID:5310353"
CDS 347310..349040
/locus_tag="Amet_0310"
/note="PFAM: Spore coat protein CotH;
KEGG: bsu:BG11791 spore coat protein (inner)"
/codon_start=1
/transl_table=11
/product="spore coat protein CotH"
/protein_id="YP_001318200.1"
/db_xref="GI:150388151"
/db_xref="InterPro:IPR014867"
/db_xref="GeneID:5310353"
/translation="MIWPLIPTILLLLLVAVLYEDEGAIHTGQAPRDPIKVEKVYLYI
DQMDLNYLYERDDYSDEEIPGVVKYDPEGEEVALRGLRFRGNSSRQEPKKSFRITFEE
SQEVIFGSRRMNLNAMYTDPSMMREGLSMDLFSRLGHPAPRTQYVELYINDVYEGLYM
HVERIDEDFLTAMGLSDKGTLVRDGFRGEVQRADMEDLSFFGFDLEGIDDPEAFVRDN
FDYRGNPDWEALLELGKWVEETQPGAEYARGFMERIDIESFVDWLAVHLLVGDIDAFY
DDYWLYLDHRVADAKWQWIPWDKDLTFGSVWRPVYNVSNDYFYYQFQMRMPWVKNDLI
VKFMETPQLMALVYERTEVLLDEVFTLEKLSIEIDRIAEKIRPSVEVSPGVGAFRLNP
RNHFGQLGNFEDHVEAIKDYVALRGQYLRKYIGHKGRLPAEGRFESTVRWNEQQLDQP
LYFVDEGGWVIGKWQGKALAEEGKLSIEVKEVPSVVGINRIWTLVYEGAPIQGELTLY
YLNDTENRNNWYETYEAVGGQRELQMIESNGIRWRELPSRVNPYSNKVVATMELSGVH
QLSLTKGSQQ"
misc_feature 347550..348569
/locus_tag="Amet_0310"
/note="CotH protein; Region: CotH; pfam08757"
/db_xref="CDD:149727"
gene 349102..350175
/locus_tag="Amet_0311"
/db_xref="GeneID:5310354"
CDS 349102..350175
/locus_tag="Amet_0311"
/note="PFAM: acyltransferase 3;
KEGG: mma:MM2212 hypothetical protein"
/codon_start=1
/transl_table=11
/product="acyltransferase 3"
/protein_id="YP_001318201.1"
/db_xref="GI:150388152"
/db_xref="InterPro:IPR002656"
/db_xref="GeneID:5310354"
/translation="MERVVMEKTGTDELNIIRTLTCLAVIFVHLTAIPVDTLLPDSVH
MMIFSFLNRGTKFTTPTFIFLSGFTLFYAYRSRELKYGTFIKKRFKSALIPYFVWTLI
YYRFFVNEGTYIPSTSFFLEHLFWAKMSYHLYFIFIIVQFYISFKLFLRGFQKWNPHM
LLVGLLITNLLFLRYADFEYMDRTFLRYIFFFGLGCYGARFVDVFREKLTQWKWMLLL
GYVAVAGYYAYQFRSYHARYLPVNVFAVEVTWLAFSTMAILTLYAFGFWLSKRSEKTS
PVFKLISQSSFYIYLSHPLGIFLAERTWDELGIYSITGRFGLNVIFVYGFSVGGCTLY
TYLKMRWQHHQKEKAVAASEMIK"
misc_feature 349135..349998
/locus_tag="Amet_0311"
/note="Acyltransferase family; Region: Acyl_transf_3;
pfam01757"
/db_xref="CDD:201957"
misc_feature 349141..350055
/locus_tag="Amet_0311"
/note="OpgC protein; Region: OpgC_C; cl00792"
/db_xref="CDD:199344"
gene 350536..351690
/locus_tag="Amet_0312"
/db_xref="GeneID:5310355"
CDS 350536..351690
/locus_tag="Amet_0312"
/note="TIGRFAM: efflux transporter, RND family, MFP
subunit;
PFAM: secretion protein HlyD family protein;
KEGG: dsy:DSY3360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_001318202.1"
/db_xref="GI:150388153"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:5310355"
/translation="MTRWFLLIMITTVILAGCSSTTSVEGDEAEPTDDYVAVEVSQVE
MRGLANEATLNGRVFSENEVMVLPRTPGIVDCVNVKLGDSVQKDQVLFVLEQDSSVLL
GIEQAEEAVKSATKGTEQAAQGIALAENQYKMAKDQYDDAQANLERIKSLYDAGAVPK
TQLDQAEMAAADGSLVAARSQITQAEISYQQTLGQLRQAEISVDQARTNLNHLEVKAP
ASGIISTLDLRVGQMVTNAQPVATIVDVNALYIQFELPENMINQFKRGQEVVVSIPAA
NVRDAKATVGLVSAATDQRTQLYPVRIDLTKSGDLVRPGSTGEVQVATNQTGNALIIE
SRAILNQDNETLVYVVENDHAVERKVTLGLDTAEYVEIIEGVSEGQQVII"
misc_feature 350647..351687
/locus_tag="Amet_0312"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 350719..350871
/locus_tag="Amet_0312"
/note="Biotinyl_lipoyl_domains are present in
biotin-dependent carboxylases/decarboxylases, the
dihydrolipoyl acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine cleavage
system (GCS). These domains transport CO2, acyl; Region:
Biotinyl_lipoyl_domains; cl11404"
/db_xref="CDD:213122"
misc_feature 351175..351480
/locus_tag="Amet_0312"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 351746..353120
/locus_tag="Amet_0313"
/pseudo
/db_xref="GeneID:5310356"
gene 353145..353717
/locus_tag="Amet_0314"
/db_xref="GeneID:5310357"
CDS 353145..353717
/locus_tag="Amet_0314"
/note="PFAM: regulatory protein, TetR;
KEGG: dsy:DSY3361 hypothetical protein"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001318203.1"
/db_xref="GI:150388154"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:5310357"
/translation="MKDKREIGKEEIIQAAMTVFDKHGFHETKMKDIATEAGIGKGTL
YEYFESKKELFRQMIIYKLNSYIEGIEKVIAHEGTTREKLMGFAAYHGGFMHEHHSKA
EMIFLKSDSLPEEFKQWMVAGRNQIFRLMLSLIEEGMNRGELRKDLNKEIATAVIFGG
IKEYYLDKIYCVGTKPGLAHDIENRLQSDY"
misc_feature 353145..>353615
/locus_tag="Amet_0314"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 353178..353318
/locus_tag="Amet_0314"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 353328..>353633
/locus_tag="Amet_0314"
/note="YsiA-like protein, C-terminal region; Region:
TetR_C_4; pfam08359"
/db_xref="CDD:116940"
gene complement(353786..355141)
/locus_tag="Amet_0315"
/db_xref="GeneID:5310358"
CDS complement(353786..355141)
/locus_tag="Amet_0315"
/note="PFAM: sodium:neurotransmitter symporter;
KEGG: cvi:CV1670 probable sodium/chloride ion channel"
/codon_start=1
/transl_table=11
/product="sodium:neurotransmitter symporter"
/protein_id="YP_001318204.1"
/db_xref="GI:150388155"
/db_xref="InterPro:IPR000175"
/db_xref="GeneID:5310358"
/translation="MANLNNNTERDQWGSKVGFILAAAGSAVGLGNLWRFPVTAGQNG
GGAFVLVYFAILILVGFTLMMAELVLGRHTQLNALGAYKKIRNNWAWVGGLGVLAGFL
ILSFYSVIGGWVINYMFKAITGAFTTSDPEFLGGMFGAFISNPVEPLFYHAIFMILTL
GIVIGGVKGGIEKYAKILMPALFVMMVLTMLRSVTLPGAMEGIKFLLVPDFSMITGAV
LLSALGQVFFSLSLGMGAMITYGSYLSKDANIPQSSFIIPLVDTGIALLAGLAILPAV
FSFGFDPAEGPGLLFVTLPAVFSQMPLGGLFGFVFFLLVLFAALTSSISLLEVCVAYV
VDEWNMTRKKATIGLAAVIFLLGIPSSLGIGVWSHISPFRGLDILDSVDFIASNVLMP
VGGFLLCIFIGWVWGLENAIKEATNEGTIPFKLAGFWSFMIKWVAPIAIAVVFVQGIL
S"
misc_feature complement(353795..355111)
/locus_tag="Amet_0315"
/note="solute carrier 6 subfamily, Fusobacterium nucleatum
Tyt1-like; solute-binding domain; Region:
SLC6sbd_Tyt1-Like; cd10336"
/db_xref="CDD:212043"
misc_feature complement(order(354176..354181,354188..354190,
355058..355060,355067..355069))
/locus_tag="Amet_0315"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(354164..354169,354176..354178,
354434..354436,354440..354442,354455..354460,
354821..354823,355046..355057,355061..355066))
/locus_tag="Amet_0315"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(354359..354361,354455..354457,
355046..355048,355061..355063))
/locus_tag="Amet_0315"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(354269..354271,354281..354283,
354803..354805,354812..354814,354824..354826,
355037..355042))
/locus_tag="Amet_0315"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212043"
gene 355486..355848
/locus_tag="Amet_0316"
/db_xref="GeneID:5310359"
CDS 355486..355848
/locus_tag="Amet_0316"
/note="PFAM: response regulator receiver;
KEGG: dsy:DSY4941 hypothetical protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_001318205.1"
/db_xref="GI:150388156"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:5310359"
/translation="MPHKILIIDDQPRICSLLEEVFKKDYEVYLATEANKALEIIETA
QPDLAIVDMNLGQESGVDLIEKMLEIKNDLLLVMLTGNYTPRHKERGAELGVKAFLEK
PFDIIEMRSCIASILSNG"
misc_feature 355498..355815
/locus_tag="Amet_0316"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 355501..355836
/locus_tag="Amet_0316"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(355510..355515,355639..355641,355663..355665,
355723..355725,355780..355782,355789..355794)
/locus_tag="Amet_0316"
/note="active site"
/db_xref="CDD:29071"
misc_feature 355639..355641
/locus_tag="Amet_0316"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(355648..355653,355657..355665)
/locus_tag="Amet_0316"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 355789..355797
/locus_tag="Amet_0316"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 355968..356357
/locus_tag="Amet_0317"
/db_xref="GeneID:5310360"
CDS 355968..356357
/locus_tag="Amet_0317"
/note="KEGG: tte:TTE0718 acyl-CoA hydrolase"
/codon_start=1
/transl_table=11
/product="acyl-CoA hydrolase"
/protein_id="YP_001318206.1"
/db_xref="GI:150388157"
/db_xref="GeneID:5310360"
/translation="MKAMIRMRMSMHDAHYGGNLVDGAKMLQLFGDVATELLIRHDGD
EGLFVGYDQVEFTAPVYAGDYIEAVGEIVKVGNTSRKMVFEARKVIVPRYDINESACD
VLEEPIVVCKASGTCVVTRDKKRLKRE"
misc_feature 355980..356228
/locus_tag="Amet_0317"
/note="The hotdog fold was initially identified in the E.
coli FabA (beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase) structure and subsequently in 4HBT
(4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
number of other seemingly unrelated...; Region: hot_dog;
cd03440"
/db_xref="CDD:48035"
misc_feature order(356031..356036,356133..356144)
/locus_tag="Amet_0317"
/note="active site 2 [active]"
/db_xref="CDD:48035"
misc_feature order(356049..356051,356058..356063,356070..356072,
356112..356114,356115..356117)
/locus_tag="Amet_0317"
/note="active site 1 [active]"
/db_xref="CDD:48035"
gene 356371..357183
/locus_tag="Amet_0318"
/db_xref="GeneID:5310361"
CDS 356371..357183
/locus_tag="Amet_0318"
/note="PFAM: protein of unknown function DUF849;
KEGG: rfr:Rfer_3885 protein of unknown function DUF849"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318207.1"
/db_xref="GI:150388158"
/db_xref="InterPro:IPR008567"
/db_xref="GeneID:5310361"
/translation="MEKLIITAALTGAEVTREQQPNLPLTPDEIAQAAYECYEAGASI
VHVHARDEEGKPTQSYEVYEEIKQKIQAKCDIIFQPSTGGAVWHTPEERLQPVELKPE
MATLSCGTCNFGPDVFMNSQEYIEKFAKRMMELGVKPEIEIFERGMIENAKGLVKKGL
AKTPLHFDFVLGVPGAAPGTVEDLLYMVRCIPEGSTWTVAGIGRAELPLATMAMIMGG
HVRVGFEDNVYYGKGELAESNAQLVARILRIAKELGREIATPEEARHILGLK"
misc_feature 356377..357177
/locus_tag="Amet_0318"
/note="Prokaryotic protein of unknown function (DUF849);
Region: DUF849; pfam05853"
/db_xref="CDD:203337"
gene 357195..357839
/locus_tag="Amet_0319"
/db_xref="GeneID:5310362"
CDS 357195..357839
/locus_tag="Amet_0319"
/EC_number="2.2.1.2"
/note="TIGRFAM: putative transaldolase;
PFAM: Transaldolase;
KEGG: bce:BC0665 transaldolase"
/codon_start=1
/transl_table=11
/product="putative transaldolase"
/protein_id="YP_001318208.1"
/db_xref="GI:150388159"
/db_xref="InterPro:IPR001585"
/db_xref="InterPro:IPR004731"
/db_xref="GeneID:5310362"
/translation="MKLFIDTANIEEIKEVAQWGILSGVTTNPSLIAKEGRDFKQVIA
EITAIVEGPISAEVVSLQAEEMLKEAQDLVAIHPNVVIKVPMTAEGLKAVKGFSEQGI
KTNVTLVFSANQALLAARAGASFVSPFVGRLDDIGQEGSELVRQIIEIYDIHGIETEI
IAASIRHTQHLTDAALAGAHIATVPYKVLKQSLLHPLTDQGIEKFLKDWEGLVK"
misc_feature 357198..357827
/locus_tag="Amet_0319"
/note="Transaldolase-like fructose-6-phosphate aldolases
(FSA) found in bacteria and archaea; Region:
Transaldolase_FSA; cd00956"
/db_xref="CDD:188643"
misc_feature order(357210..357212,357273..357278,357441..357443,
357579..357581,357681..357683)
/locus_tag="Amet_0319"
/note="active site"
/db_xref="CDD:188643"
misc_feature order(357243..357245,357252..357254,357279..357284,
357291..357293,357300..357302,357309..357311,
357363..357365,357381..357383,357399..357401,
357459..357461,357465..357470,357477..357479,
357534..357536,357579..357581,357585..357587,
357594..357596,357600..357602,357651..357656,
357693..357695,357699..357701,357717..357722,
357729..357731,357777..357779,357783..357788,
357795..357797,357807..357812,357816..357821)
/locus_tag="Amet_0319"
/note="intersubunit interactions; other site"
/db_xref="CDD:188643"
misc_feature 357441..357443
/locus_tag="Amet_0319"
/note="catalytic residue [active]"
/db_xref="CDD:188643"
gene 357933..358751
/locus_tag="Amet_0320"
/db_xref="GeneID:5310363"
CDS 357933..358751
/locus_tag="Amet_0320"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: tte:TTE0552 predicted hydrolase or acyltransferase
(alpha/beta hydrolase superfamily)"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase fold protein"
/protein_id="YP_001318209.1"
/db_xref="GI:150388160"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR000639"
/db_xref="InterPro:IPR003089"
/db_xref="GeneID:5310363"
/translation="MPKVKINDVDIHYRVSGKGDQVLMILNGIMMSVASWMEMVPTYT
RAGYKVINVDFRDQGESGSSPGGYSNEQHVEDLKGLLTHLEIKSCTVLGISYGGQVAM
MLALAYPEMVRGLILANTMSRFTPYLRAIGAAWDEGAKLQDGETFFKLAMPLIYSDVF
YERKEQWLQDRAREFGKAATAQWFQRYLRLSSSLEGYDISGKIHSIEVPTLVIASDKD
VVTPYEELLMIHRKIKNSLFVMLPEAGHASCYEKMREFNVQVLGFLVMNQGMDG"
misc_feature 357963..358724
/locus_tag="Amet_0320"
/note="3-oxoadipate enol-lactonase; Region: protocat_pcaD;
TIGR02427"
/db_xref="CDD:131480"
misc_feature <358164..>358310
/locus_tag="Amet_0320"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 359244..360242
/gene="glpX"
/locus_tag="Amet_0321"
/db_xref="GeneID:5310364"
CDS 359244..360242
/gene="glpX"
/locus_tag="Amet_0321"
/EC_number="3.1.3.11"
/note="type II fructose 1,6-bisphosphatae; in Escherichia
coli this protein forms a dimer and binds manganese"
/codon_start=1
/transl_table=11
/product="fructose 1,6-bisphosphatase II"
/protein_id="YP_001318210.1"
/db_xref="GI:150388161"
/db_xref="InterPro:IPR004464"
/db_xref="GeneID:5310364"
/translation="MDRNLALELVRVTETAALASASYMGRGDKIGADQAAVDGMRRAF
NSISIRGTVVIGEGDLDEAPMLYIGETVGCGDETEIEVDIAVDPLEGTTLIAKGLPNA
IAVLAIAPKGTLLHAPDMYMRKIAVGPRAKGVINIAAPTSENLHAIAKALDKKIEDLT
VTVQDRPRHEKLIEEIREAGARIKLFGDGDVATAIATGFEETGVDVLMGIGGAPEGVI
AAVALKCLGGDMQAILNPMSPEEETRCREMGLSQDDVKKVLTLDDLVSSEDCFFAATG
ITQGDLLQGVVYKGNNRASTHSVVMRGKTGTVRFVEALHRLDKNETLTDVLKKHQR"
misc_feature 359247..360188
/gene="glpX"
/locus_tag="Amet_0321"
/note="Bacterial fructose-1,6-bisphosphatase,
glpX-encoded. A dimeric enzyme dependent on Mg(2+).
glpX-encoded FPBase (FBPase class II) differs from other
members of the inositol-phosphatase superfamily by
permutation of secondary structure elements. The core...;
Region: FBPase_glpX; cd01516"
/db_xref="CDD:30132"
misc_feature order(359340..359342,359409..359414,359502..359516,
359811..359813,359886..359888)
/gene="glpX"
/locus_tag="Amet_0321"
/note="putative active site [active]"
/db_xref="CDD:30132"
gene 360274..361242
/gene="glpX"
/locus_tag="Amet_0322"
/db_xref="GeneID:5310365"
CDS 360274..361242
/gene="glpX"
/locus_tag="Amet_0322"
/EC_number="3.1.3.11"
/note="type II fructose 1,6-bisphosphatae; in Escherichia
coli this protein forms a dimer and binds manganese"
/codon_start=1
/transl_table=11
/product="fructose 1,6-bisphosphatase II"
/protein_id="YP_001318211.1"
/db_xref="GI:150388162"
/db_xref="InterPro:IPR004464"
/db_xref="GeneID:5310365"
/translation="MDRNLAINLVRVTEAAAIGAAKHMGRGDKEAADQAGVDGMRKMF
DTINIEGTVVIGEGEMDEAPMLYIGEVVGERGHNAPQVDIAVDPVEGTTAVAKGLPNA
IAVVAMAPKGCLLHAPDMYMDKIAVGPAAAGKIHIDWPVHKNLKATAEALNKSISDLT
VTILDRPRHADIIQQCRDAGARIKLFSDGDVATAIATCFDDTGIDILLGIGGAPEGVI
AAAALKSLGGEFQGKLIEFEEGEAERCIKMGVCVNKVYYMDDLVKGNEVYFAATGISD
GDLLKGVVYGGNGIVKTHSVVMRSETGTIRFIEAIHRLNQKPTYSY"
misc_feature 360277..361209
/gene="glpX"
/locus_tag="Amet_0322"
/note="Bacterial fructose-1,6-bisphosphatase,
glpX-encoded. A dimeric enzyme dependent on Mg(2+).
glpX-encoded FPBase (FBPase class II) differs from other
members of the inositol-phosphatase superfamily by
permutation of secondary structure elements. The core...;
Region: FBPase_glpX; cd01516"
/db_xref="CDD:30132"
misc_feature order(360370..360372,360439..360444,360532..360546,
360841..360843,360916..360918)
/gene="glpX"
/locus_tag="Amet_0322"
/note="putative active site [active]"
/db_xref="CDD:30132"
gene 361368..362801
/gene="rho"
/locus_tag="Amet_0323"
/db_xref="GeneID:5310366"
CDS 361368..362801
/gene="rho"
/locus_tag="Amet_0323"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_001318212.1"
/db_xref="GI:150388163"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004665"
/db_xref="InterPro:IPR011112"
/db_xref="InterPro:IPR011113"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR013223"
/db_xref="GeneID:5310366"
/translation="MDKTELATKKLEDLRQIARALGIKNIGKYKKSELMERIIGQEPT
EDKGTTIEEIEQPIEPSQATQEPEKTSKPGVQEIPPEKKDSLVVQQAKEQGLPSHLTD
EISEDESVNIAQGILEIHSDGYGFLRRYNYLSSDGDIYISPSQIRRFNMRTGDKITGI
TRPPKSGEKFKALLYVKQINDLNPETATRRPNFEDLTPIYPNKRINLELNTKELSTRL
IDLIAPIGKGQRGMIAAPPKAGKTILLQQVANSVALNYPETEIIVLLIDERPEEVTDM
QRSIKGEVVYSTFDELPSHHVKVAEMVLSRAQRLVEHGKDVVILLDSITRLARAYNLT
IPTTGRTLSGGLDPGALHKPKRFFGAARNLEEGGSLTIIATALIETGSRMDEVIFEEF
KGTGNMELHLDRKLSEKRIFPAVDINKSGTRREELLLSQRELETIWKIRRAMGNSSPQ
DVTEKIIASLLETKSNHEFVEMLAKRL"
misc_feature 361380..>361484
/gene="rho"
/locus_tag="Amet_0323"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; smart00959"
/db_xref="CDD:198027"
misc_feature 361560..362792
/gene="rho"
/locus_tag="Amet_0323"
/note="Transcription termination factor [Transcription];
Region: Rho; COG1158"
/db_xref="CDD:31352"
misc_feature 361704..361895
/gene="rho"
/locus_tag="Amet_0323"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:88425"
misc_feature order(361719..361721,361725..361727,361737..361739,
361743..361745,361749..361751,361779..361781,
361785..361787,361860..361862,361869..361877)
/gene="rho"
/locus_tag="Amet_0323"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88425"
misc_feature 362004..362747
/gene="rho"
/locus_tag="Amet_0323"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:29994"
misc_feature order(362055..362057,362388..362390,362421..362423,
362430..362435,362442..362444,362451..362453,
362460..362462,362535..362540,362544..362558,
362562..362564,362634..362639,362679..362681,
362691..362693)
/gene="rho"
/locus_tag="Amet_0323"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29994"
misc_feature 362070..362093
/gene="rho"
/locus_tag="Amet_0323"
/note="Walker A motif; other site"
/db_xref="CDD:29994"
misc_feature order(362079..362081,362085..362096,362601..362603)
/gene="rho"
/locus_tag="Amet_0323"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29994"
misc_feature 362319..362333
/gene="rho"
/locus_tag="Amet_0323"
/note="Walker B motif; other site"
/db_xref="CDD:29994"
gene 362910..363107
/gene="rpmE"
/locus_tag="Amet_0324"
/db_xref="GeneID:5310367"
CDS 362910..363107
/gene="rpmE"
/locus_tag="Amet_0324"
/note="RpmE; there appears to be two types of ribosomal
proteins L31 in bacterial genomes; some contain a CxxC
motif while others do not; Bacillus subtilis has both
types; the proteins in this cluster have the CXXC motif;
RpmE is found in exponentially growing Bacilli while YtiA
was found after exponential growth; expression of ytiA is
controlled by a zinc-specific transcriptional repressor;
RpmE contains one zinc ion and a CxxC motif is responsible
for this binding; forms an RNP particle along with
proteins L5, L18, and L25 and 5S rRNA; found crosslinked
to L2 and L25 and EF-G; may be near the
peptidyltransferase site of the 50S ribosome"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_001318213.1"
/db_xref="GI:150388164"
/db_xref="InterPro:IPR002150"
/db_xref="GeneID:5310367"
/translation="MKKDIHPAYQQIDVHCVCGNKFKTGSTNKEIRVEVCSDCHPFYT
GKQKSVEKGGRVEKFKKKFGM"
misc_feature 362910..363104
/gene="rpmE"
/locus_tag="Amet_0324"
/note="50S ribosomal protein L31; Reviewed; Region: rpmE;
PRK00019"
/db_xref="CDD:178797"
gene 363205..363792
/locus_tag="Amet_0325"
/db_xref="GeneID:5310368"
CDS 363205..363792
/locus_tag="Amet_0325"
/EC_number="2.7.1.21"
/note="PFAM: thymidine kinase;
KEGG: tte:TTE0140 Thymidine kinase"
/codon_start=1
/transl_table=11
/product="thymidine kinase"
/protein_id="YP_001318214.1"
/db_xref="GI:150388165"
/db_xref="InterPro:IPR001267"
/db_xref="GeneID:5310368"
/translation="MVDIMEYSKDGSIEVIVGPMYAGKSEELIRRINRAEIAELKVLA
FKPSIDNRYSAQHITSHNGKQLKCIPVKDAKEVMEYIEKQDFDILAIDEVQFLGDEVL
KVCQDVANRGKRVICSGLDMDFRGEPFQVVPNLMAIAEHVTKLTAVCMTCKMPATRTQ
RLVDGRPAKYDDPIIMVGAKESYEARCRKCHVVIR"
misc_feature 363235..363783
/locus_tag="Amet_0325"
/note="thymidine kinase; Provisional; Region: PRK04296"
/db_xref="CDD:179813"
gene 364403..365224
/locus_tag="Amet_0326"
/db_xref="GeneID:5310369"
CDS 364403..365224
/locus_tag="Amet_0326"
/note="PFAM: regulatory protein, MerR;
KEGG: pca:Pcar_2183 predicted transcriptional regulator"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_001318215.1"
/db_xref="GI:150388166"
/db_xref="InterPro:IPR000551"
/db_xref="GeneID:5310369"
/translation="MNGMKHSVGNVANILGLSPGILRHYEKLGIINPERDNSGYRSYS
TRDVNILMGVRKLIGMGFSLEEVKHLIYGASLEKVKQSLDTLEENMKKEIRWRQLVLE
FIQKQRQEYEVISEESHKFEITKSPAVYRIRSQYENFLSAEEAANTYVYRWISKMPIV
RISPEFSVEAIYNQTEEYQFGFVVEEELAEELELMETPDMIFIPSQLCLTTIISSQGE
DHIKASMLKRAVNYIAKHNMKISDNAWGMTIGSYVEKDMHKRFHKIFIPIENENK"
misc_feature 364421..364705
/locus_tag="Amet_0326"
/note="Helix-Turn-Helix DNA binding domain of MerR-like
transcription regulators; Region: HTH_MerR-like; cd00592"
/db_xref="CDD:133378"
misc_feature 364421..364615
/locus_tag="Amet_0326"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature order(364421..364429,364469..364471,364517..364525)
/locus_tag="Amet_0326"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133378"
misc_feature order(364559..364561,364568..364570,364580..364585,
364610..364612,364649..364651,364661..364663,
364679..364681,364691..364693,364700..364705)
/locus_tag="Amet_0326"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133378"
gene 365325..367259
/locus_tag="Amet_0327"
/db_xref="GeneID:5310370"
CDS 365325..367259
/locus_tag="Amet_0327"
/note="TIGRFAM: flavocytochrome c;
PFAM: fumarate reductase/succinate dehydrogenase
flavoprotein domain protein; FAD dependent oxidoreductase;
FMN-binding domain protein; FAD-dependent pyridine
nucleotide-disulphide oxidoreductase;
KEGG: ser:SERP2381 NADH:flavin oxidoreductase/fumarate
reductase, flavoprotein subunit, putative"
/codon_start=1
/transl_table=11
/product="flavocytochrome c"
/protein_id="YP_001318216.1"
/db_xref="GI:150388167"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR007329"
/db_xref="InterPro:IPR010960"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:5310370"
/translation="MKGFKRNIAIVLLIAMSLMSFIGCSQQATTQGQFIAGTYEASAR
GMIGDIKIAVTFTEDRIEKIEILEHQETEGIADPALERIPQSIVANQSLGVDSITGAT
ITSLAILNAVEDAATQAGADIEILKNKAVASTKGEKIEKTTDVIVIGGGGAGIAAAAS
SVENGAEVILIEKAAALGGNTLASGFAWNATNPEIQGKIGTMPGQIEMLKGVLELDEE
GFGEFTDILKTLKEQITTYLDGDASTVFDSVEFHIIQAYQGGRRQDRDGNWIENDYDL
LTTFAENSLPTLNWVQSLGGAFSEELTSPVGAMWLRGHNPVGKKQIFDALADYIVENG
SEIMLETKADELIVKDGRIVGIKGTKADGTEVELYANKGVIMATGGYGANPSLAAEYN
NYWPSIPEDMKTTNVSTVTGDGIIMGREIDANLVGMEFIQLMPTANEKSGSLTDGLLV
APQNYVFVNKEGKRFINEYAARDELAFAALEQTDEMFYTIADQPMALSAQNRPTQEMI
DKMVEDGLIYRADTLEKLAEIIGCDPQTFVDEIEKYNSYVEAGKDPEYGKAVFEMQVK
EGPFYACPAKPAIHHTMGGLEINVRGEVLDTASNVIPGFYAAGEVTGGIHGGNRLGGN
AIADVFVFGRIAGENAATNK"
misc_feature 365457..365681
/locus_tag="Amet_0327"
/note="FMN-binding domain; Region: FMN_bind; pfam04205"
/db_xref="CDD:202932"
misc_feature 365820..367238
/locus_tag="Amet_0327"
/note="flavocytochrome c; Region: flavo_cyto_c; TIGR01813"
/db_xref="CDD:188168"
misc_feature <366282..>366779
/locus_tag="Amet_0327"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 367824..368051
/locus_tag="Amet_0328"
/db_xref="GeneID:5310371"
CDS 367824..368051
/locus_tag="Amet_0328"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318217.1"
/db_xref="GI:150388168"
/db_xref="GeneID:5310371"
/translation="MKDLEEAIIKAGLEEKVELLHFIDAFSDELDQYPQIVMKIENME
IGIPAVCFGEEVIVEDKIDIEKIVQALKELS"
gene 368239..369639
/locus_tag="Amet_0329"
/db_xref="GeneID:5310372"
CDS 368239..369639
/locus_tag="Amet_0329"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318218.1"
/db_xref="GI:150388169"
/db_xref="GeneID:5310372"
/translation="MNNSYRDRFQVVEIIKNNSVQKIMIATDIKKIHEIVLINILNNE
KGLLDNNEALWRSTLDGLILFEATDDEITLITTVQSRETVESYLKKKSLSEKERFVLI
HQYLKGILRYEPLPNHVKNMMIGLGQVVIDGEHIAFTELLILEETDFSEQGYKVITRN
IGEVLNYLMTEGQIAESKEVNNLGEIQNFIENLQQDEHHYRDIRDIFNSFRGLYTYHI
WMPPTIQLQDEKIVTQLRRKRVEAAKRAHNKTRNTSLVVGVIGILMVGIAGVYSNWGG
FLFDLYTDDTIAEPTEILGEEATTEVLNEYGDEVQEKIVREGKEQQEENNEKNTEHPR
ERLEDVALTYGKEENIARDYGNLRSGKYSLRLDGEVQERGSVQIKDVILEVESFVSFW
VQSDAAAPLKITLEGYGNDHLLDQQTINYQPSVIKFWERIDFQPKNGEIDELHIIFSE
VKSVLWIDDIKIDVFK"
gene 369672..370553
/locus_tag="Amet_0330"
/db_xref="GeneID:5310373"
CDS 369672..370553
/locus_tag="Amet_0330"
/note="TIGRFAM: modification methylase, HemK family;
PFAM: methyltransferase small;
KEGG: cth:Cthe_2428 modification methylase, HemK family"
/codon_start=1
/transl_table=11
/product="HemK family modification methylase"
/protein_id="YP_001318219.1"
/db_xref="GI:150388170"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR004556"
/db_xref="InterPro:IPR007848"
/db_xref="GeneID:5310373"
/translation="MKTVVDLLKEATAVLKEIDVDTPQLDAEVILCHLLKTERIQLHI
YPERKVDEEVQEQFWEGIQKRKKRMPVQYIVGTQEFMGLDFRVESGVLIPRADTEILV
ESVLGLYEVHYNNEAVALMDIGTGSGAIAISLARFIERSKIYAIDLSEKALEIAENNG
RTNEVQHKISFFYGSLFEPLKGYDLEGTFQFVISNPPYIPPDVVEELSPQVKDYEPRM
ALEGGADGLDFYREIVEKAPQYLQMKGWLCFEIGYDQGEQVKGLMETRGFSRVEVIRD
LAGLDRVVIGQWTVENR"
misc_feature 369672..370535
/locus_tag="Amet_0330"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:181780"
misc_feature 370035..>370271
/locus_tag="Amet_0330"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(370038..370058,370110..370115,370191..370199,
370254..370256)
/locus_tag="Amet_0330"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 370654..371727
/gene="prfA"
/locus_tag="Amet_0331"
/db_xref="GeneID:5310374"
CDS 370654..371727
/gene="prfA"
/locus_tag="Amet_0331"
/note="recognizes the termination signals UAG and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF1; this protein is
similar to release factor 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 1"
/protein_id="YP_001318220.1"
/db_xref="GI:150388171"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004373"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:5310374"
/translation="MLDKLAFLQEKYEDLGEKISDPEIINDQVQWQKLIKEHSEIEPI
VMKYREYKTTQQALGETKEIMHDKATDAELKEMAKMEVEELEESIVEMEEQLKVMLLP
TDPNDDKNVIVEIRGGAGGDEAGLFAAVLFRMYTRYAERSGWKVEMMSLNESGVGGYK
EVIFMIKGKGAYSQLKYESGAHRVQRIPTTESGGRIHTSTATVVIMPEAEDVGEVNID
TNELRIDVFRSSGNGGQSVNTTDSAVRITHLPTGLVVSCQDGKSQLKNKEKAMKVLKS
RLLDQMIQEQDAEISQDRRSKVGTGDRSERIRTYNFPQGRVTDHRINVTVYKLDAFLD
GEINEMIDSLITSAQAEKMQEVQ"
misc_feature 370654..371718
/gene="prfA"
/locus_tag="Amet_0331"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature <370936..371187
/gene="prfA"
/locus_tag="Amet_0331"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 371272..371616
/gene="prfA"
/locus_tag="Amet_0331"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 371953..372618
/locus_tag="Amet_0332"
/db_xref="GeneID:5310375"
CDS 371953..372618
/locus_tag="Amet_0332"
/note="PFAM: zinc/iron permease;
KEGG: tte:TTE0144 predicted divalent heavy-metal cations
transporter"
/codon_start=1
/transl_table=11
/product="zinc/iron permease"
/protein_id="YP_001318221.1"
/db_xref="GI:150388172"
/db_xref="InterPro:IPR003689"
/db_xref="GeneID:5310375"
/translation="MAFLLNNPTKRFLSAIMGLSSGLMVAIVTFELLPEAFMIAGVPW
TVVGLIGGVLIATILDGFIARLSSRKHGGKHGYVKTAALLGIGIALHNFPEGMAIGSG
FVAQNRLGIGLAIVIALHNMPEGVAMVTPLRVGGYSRSKAFFLTLLAGTPMGIGAYFG
ALLGRVADGFIGICLAFAGGTMLYITFGELIPRGKELDQGRISTICATFGFVLGMLIS
KRF"
misc_feature 371953..372603
/locus_tag="Amet_0332"
/note="Predicted divalent heavy-metal cations transporter
[Inorganic ion transport and metabolism]; Region: COG0428;
cl00437"
/db_xref="CDD:185996"
gene 372719..373171
/locus_tag="Amet_0333"
/db_xref="GeneID:5310376"
CDS 372719..373171
/locus_tag="Amet_0333"
/note="PFAM: Forkhead-associated protein;
KEGG: cth:Cthe_3045 FHA domain containing protein"
/codon_start=1
/transl_table=11
/product="FHA domain-containing protein"
/protein_id="YP_001318222.1"
/db_xref="GI:150388173"
/db_xref="InterPro:IPR000253"
/db_xref="GeneID:5310376"
/translation="MYQILSWIVRYLLIALVYYFIYSIIRLIYLDIKAINEKEARGPR
TPYLKLVNRKERLDFEIDELYDLHEETTIGRGKENEIQIVDQFISTRHVRIALDEGQY
FLEDLGSVNGTYLNGEKLQDVAKLKDGDRIGLGQVEFLFVKEEEEEED"
misc_feature 372890..373141
/locus_tag="Amet_0333"
/note="Forkhead associated domain (FHA); found in
eukaryotic and prokaryotic proteins. Putative nuclear
signalling domain. FHA domains may bind phosphothreonine,
phosphoserine and sometimes phosphotyrosine. In
eukaryotes, many FHA domain-containing proteins...;
Region: FHA; cd00060"
/db_xref="CDD:28942"
misc_feature <372929..373123
/locus_tag="Amet_0333"
/note="FOG: FHA domain [Signal transduction mechanisms];
Region: COG1716"
/db_xref="CDD:31902"
misc_feature order(372941..372943,372977..372979,372983..372988,
373046..373054)
/locus_tag="Amet_0333"
/note="phosphopeptide binding site; other site"
/db_xref="CDD:28942"
gene 373176..374390
/locus_tag="Amet_0334"
/db_xref="GeneID:5310377"
CDS 373176..374390
/locus_tag="Amet_0334"
/note="PFAM: cell cycle protein;
KEGG: cth:Cthe_3046 cell cycle protein"
/codon_start=1
/transl_table=11
/product="cell cycle protein"
/protein_id="YP_001318223.1"
/db_xref="GI:150388174"
/db_xref="InterPro:IPR001182"
/db_xref="GeneID:5310377"
/translation="MARPIHIVVLINLLLFPLLFFYGEAQDPLILAIGGGIILLTILS
QFAIVKGKMGDPYIFLILSLLCSISIAMLYRLDPFYGIRQTIWYGVGLILFFLTYVFF
RWVKKWDEYFYLYVIAGVGLFAATYFLGTTIKGANNWIRIGGFTFQPAEAIKLIFVFM
IASYFKHTQKVKNVYVFLGIVYLHMLFLMLQRDMGMVLLFYAVFISLFYVHIEDYRLI
LYNTVPFGLMAVISYLTMNHVRVRFEAWLNPWQDIAGRGYQITQSLFAIAGGGFFGTG
IGLGNPGVIPEVHTDFIFSAIAEELGVFGAIAMILLYFILIYRGFKIVLTINEPFRKT
VALGITLLYGYQTFIIVGGVIKLIPLTGITLPFVSYGGSAFVSGFVAFGILQALSTKW
KPGRGRLEIERK"
misc_feature 373410..374345
/locus_tag="Amet_0334"
/note="Cell cycle protein; Region: FTSW_RODA_SPOVE;
pfam01098"
/db_xref="CDD:110122"
gene 374377..375777
/locus_tag="Amet_0335"
/db_xref="GeneID:5310378"
CDS 374377..375777
/locus_tag="Amet_0335"
/EC_number="2.4.1.129"
/note="PFAM: penicillin-binding protein, transpeptidase;
KEGG: cth:Cthe_3047 peptidoglycan glycosyltransferase"
/codon_start=1
/transl_table=11
/product="peptidoglycan glycosyltransferase"
/protein_id="YP_001318224.1"
/db_xref="GI:150388175"
/db_xref="InterPro:IPR001460"
/db_xref="GeneID:5310378"
/translation="MNGNKRIVHLIVLTSVLFLSLISYLTYFQVFRATTIAENSFNPR
HWAREDTTLRGRIYDRNGLILADSDVEEGRPIRSYPHGRLYSHVIGYHNRQYGRTGIE
FYYNEHLMDLLMERPVARIRDRITGEMIQGNDLVLTIDHELQQLAHQLLGNKNGSIVA
LDPRNGEVLAMVSKPDYNPNTLVGDWNDLIIREDSPLLNRSIAGLYTPGSVYKILMAA
KGVEEGLETNVYESTSSIVVDGYTLSNYGETAHGEITLGEALAVSANTSFARLALELG
EGSVTEISRRFLMGERIPSDMPVNRSLYPYEGGLQDTELVAVSIGQGRLLVTPLHMAA
MTSVFANGGVMMAPHIVQEVQSPTGRVVLRPGGEVVTVVSAEVAETVKEMMISVVEQG
TGRNAGVQGVSVAGKTGTAENVTGKSHAWFVGFAPAEAPQIVVAVILESEGQTGGAAA
APIARDLIGRGIQGGN"
misc_feature <374596..374703
/locus_tag="Amet_0335"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 374842..375750
/locus_tag="Amet_0335"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 375780..376850
/locus_tag="Amet_0336"
/db_xref="GeneID:5310379"
CDS 375780..376850
/locus_tag="Amet_0336"
/note="TIGRFAM: Sua5/YciO/YrdC/YwlC family protein;
PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal
domain;
KEGG: tte:TTE0145 putative translation factor (SUA5)"
/codon_start=1
/transl_table=11
/product="Sua5/YciO/YrdC/YwlC family protein"
/protein_id="YP_001318225.1"
/db_xref="GI:150388176"
/db_xref="InterPro:IPR004388"
/db_xref="InterPro:IPR005145"
/db_xref="InterPro:IPR006070"
/db_xref="GeneID:5310379"
/translation="MKRTKIIKLEEMNEKQIDEILTACGEMIREGKTVAFPTETVYGL
GANALDSKAINKIFVAKGRPSDNPLIVHVAHRVEVDALVRVIPEKAKKLMAHFWPGPL
TLVMEKSHGIPGEISAGLSTVAIRMPVHPIARTLIEKAGVPVAAPSANTSGKPSPTRA
AHVIQDLRGKVDAIIAGGPCDVGVESTVLDVTEETPMILRPGGVTKEMLEAVIGEVAL
DPGLYHRGEMKDVPRSPGMKYTHYAPKAKVIIIEGVEAAVVRKIREMVAYYKEKGLSV
GVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLFRVLREFDETNVAIILSEAVEE
VGIGQAVMNRLMKAAGNEKINA"
misc_feature 375789..376427
/locus_tag="Amet_0336"
/note="Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis]; Region: SUA5;
COG0009"
/db_xref="CDD:30359"
misc_feature 376389..376829
/locus_tag="Amet_0336"
/note="Putative GTP-binding controlling metal-binding;
Region: SUA5; pfam03481"
/db_xref="CDD:202661"
gene 376869..377348
/locus_tag="Amet_0337"
/db_xref="GeneID:5310380"
CDS 376869..377348
/locus_tag="Amet_0337"
/note="PFAM: low molecular weight phosphotyrosine protein
phosphatase;
KEGG: chy:CHY_2559 low molecular weight
protein-tyrosine-phosphatase"
/codon_start=1
/transl_table=11
/product="protein tyrosine phosphatase"
/protein_id="YP_001318226.1"
/db_xref="GI:150388177"
/db_xref="InterPro:IPR000106"
/db_xref="GeneID:5310380"
/translation="MKTILFICTGNTCRSIMGEALMKELLSKQPHTLGEVTVLSAGVS
AASGEPASGQAVEVMNEKGISLGQHRATPISKSLIDEADLVLTMTANHKKVVLEIHPK
AKDKVYTLKEYTGTVDSLDISDPFGQPVVIYRRSAEEIEGQLKQLLEKLEDEKNEKK"
misc_feature 376872..377273
/locus_tag="Amet_0337"
/note="Low molecular weight phosphatase family; Region:
LMWPc; cd00115"
/db_xref="CDD:29014"
misc_feature 376878..377273
/locus_tag="Amet_0337"
/note="Low molecular weight phosphotyrosine protein
phosphatase; Region: LMWPc; pfam01451"
/db_xref="CDD:201802"
misc_feature order(376890..376892,376896..376901,376905..376913)
/locus_tag="Amet_0337"
/note="active site"
/db_xref="CDD:29014"
gene 377459..377908
/locus_tag="Amet_0338"
/db_xref="GeneID:5310381"
CDS 377459..377908
/locus_tag="Amet_0338"
/EC_number="5.3.1.26"
/note="TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB
family; ribose 5-phosphate isomerase B;
PFAM: Ribose/galactose isomerase;
KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B"
/codon_start=1
/transl_table=11
/product="RpiB/LacA/LacB family sugar-phosphate isomerase"
/protein_id="YP_001318227.1"
/db_xref="GI:150388178"
/db_xref="InterPro:IPR003500"
/db_xref="InterPro:IPR004785"
/db_xref="GeneID:5310381"
/translation="MKIAIGSDHGGYELKNLIKEHLLNKKLEVVDFGTESTDSCDYAD
YAQGVAEAVAKGDYARGILICGTGIGISIAANKVPGIRCALVGDCFSAKATTEHNDSN
VLALGGRVVGPGLALEIVDIWLSATFQGGRHQKRIDKITDIESKYYK"
misc_feature 377459..377896
/locus_tag="Amet_0338"
/note="ribose-5-phosphate isomerase B; Provisional;
Region: PRK05571"
/db_xref="CDD:180136"
gene 377924..378553
/gene="upp"
/locus_tag="Amet_0339"
/db_xref="GeneID:5310382"
CDS 377924..378553
/gene="upp"
/locus_tag="Amet_0339"
/note="Catalyzes the formation of uracil and
5-phospho-alpha-D-ribosy 1-diphosphate from UMP and
diphosphate"
/codon_start=1
/transl_table=11
/product="uracil phosphoribosyltransferase"
/protein_id="YP_001318228.1"
/db_xref="GI:150388179"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR005765"
/db_xref="GeneID:5310382"
/translation="MSKVFVIDHPLIQHKLTLIRDKNTGSKDFRDLVKEISLLMGYEV
TRNLSLQEIEIETPVGVTKSKVISGRKLGIVPILRAGLGMVDGILQLIPAAKVGHVGL
YRDPETLEPVEYYCKLPVDVQEREIIVLDPMLATGGSANATLKAIKDRGVANMKLVCI
VSCPEGIAAVQKAHPDVDIYVAAIDEKLNDHAYIVPGLGDAGDRLFGTK"
misc_feature 378143..378475
/gene="upp"
/locus_tag="Amet_0339"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(378155..378157,378161..378163,378314..378322,
378326..378340,378410..378412)
/gene="upp"
/locus_tag="Amet_0339"
/note="active site"
/db_xref="CDD:206754"
gene 378757..379197
/locus_tag="Amet_0340"
/db_xref="GeneID:5310383"
CDS 378757..379197
/locus_tag="Amet_0340"
/note="PFAM: CMP/dCMP deaminase, zinc-binding;
KEGG: cth:Cthe_2599 CMP/dCMP deaminase, zinc-binding"
/codon_start=1
/transl_table=11
/product="CMP/dCMP deaminase"
/protein_id="YP_001318229.1"
/db_xref="GI:150388180"
/db_xref="InterPro:IPR002125"
/db_xref="GeneID:5310383"
/translation="MRPSWDQYFMEMAEVVKTRSTCMRRQVGAVVVKDKRVLSSGYNG
APSGIEHCEKTGCLREQLGVPSGERHELCRGLHAEQNAIIQAAYHGVEIQGTTLYVTL
QPCVLCAKMLINAGVKRLVFKGQYPDDLSEKMLTEAGIEMEKFE"
misc_feature 378772..379152
/locus_tag="Amet_0340"
/note="Deoxycytidylate deaminase domain. Deoxycytidylate
deaminase catalyzes the deamination of dCMP to dUMP,
providing the nucleotide substrate for thymidylate
synthase. The enzyme binds Zn++, which is required for
catalytic activity. The activity of the...; Region:
deoxycytidylate_deaminase; cd01286"
/db_xref="CDD:29829"
misc_feature order(378886..378888,378985..378987,378991..378993,
379066..379071,379078..379080)
/locus_tag="Amet_0340"
/note="catalytic motif [active]"
/db_xref="CDD:29829"
misc_feature order(378985..378987,378991..378993,379069..379071,
379078..379080)
/locus_tag="Amet_0340"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29829"
gene 379281..380321
/locus_tag="Amet_0341"
/db_xref="GeneID:5310384"
CDS 379281..380321
/locus_tag="Amet_0341"
/note="PFAM: glycosyl transferase, family 4;
KEGG: tte:TTE0154 UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001318230.1"
/db_xref="GI:150388181"
/db_xref="InterPro:IPR000715"
/db_xref="InterPro:IPR003524"
/db_xref="GeneID:5310384"
/translation="MEKYMITFFVALAISYILTPYAKKLAYRIGAIDVPKDNRRIHKK
PIPRLGGVAIYTAFMITALISLPIDRQLMAILIGATVIVLTGIIDDVKPISAKYKMVA
QIIAALIIVSSGLRIVYVSNPLVPGAGMNLGILSIPVTIFWIVGVTNAVNLIDGLDGL
AAGVSVIASISLAAVAYLNGQPEVAVLLVILAGASLGFLPYNFNPAQIFMGDTGSLFI
GFILASVSIEGVIKSATTIAVAIPVLALGVPIFDTAFAIVRRLVNKRPIMEADKGHLH
HCLLDRGLSQKQTVLVLYSISIILGGSAIIIADATRGTAYLLIVFIATSVLLGAIRIG
LFKKSAEEKANS"
misc_feature 379290..380162
/locus_tag="Amet_0341"
/note="UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane];
Region: Rfe; COG0472"
/db_xref="CDD:30820"
misc_feature 379395..380132
/locus_tag="Amet_0341"
/note="This subfamily contains Escherichia coli WecA,
Bacillus subtilis TagO and related proteins. WecA is an
UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate
(Und-P) GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond...; Region:
GT_WecA_like; cd06853"
/db_xref="CDD:133463"
misc_feature 379545..379550
/locus_tag="Amet_0341"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133463"
misc_feature 379905..379916
/locus_tag="Amet_0341"
/note="putative catalytic motif [active]"
/db_xref="CDD:133463"
misc_feature order(380058..380060,380100..380111)
/locus_tag="Amet_0341"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133463"
gene complement(380538..381953)
/locus_tag="Amet_0342"
/db_xref="GeneID:5310385"
CDS complement(380538..381953)
/locus_tag="Amet_0342"
/note="PFAM: sodium:neurotransmitter symporter;
KEGG: vfi:VF1605 putative neurotransmitter:Na+ symporter,
NSS family"
/codon_start=1
/transl_table=11
/product="sodium:neurotransmitter symporter"
/protein_id="YP_001318231.1"
/db_xref="GI:150388182"
/db_xref="InterPro:IPR000175"
/db_xref="GeneID:5310385"
/translation="MEKSIPKRENWGSRIGFIMAAAGSAVGLGNIWRFPYLLGENGGA
AFLLIYLVFVVFIGISIMIAEFAVGRNSGSAAVGAYKSKSGKWTFAGVIGVLSAFFIM
GFYPVVGGWSLAYIAQTFTGLLSNPEAIGGTFGAFIGSTTAPLIWMIVFLALNVFIVA
RGIAGGIEKAGKILMPVLFGLLVLIAIRSLTLPGAAAGLSYMFKPDFSAVTGQTYLAA
LGQAFFSLSLGMGCMITYGSYLNKKEDLATNAVLVTGMDVGVALLAGLAMFPAIFALG
MAPDAGPGLVFVVIPSVFAAMGGIGPILSVIFFVALTVAALTSSVSLMEVAVAYFIDE
KGIERKKAVYSVASAMGVLSILSSLSLGSMSGVTLFGVGFFDFFDILTDKIFLSIGGL
LLSVFVGWFLDKEMLRKELTNGGTVKFALFEAWHFLIKYVIPVAISIVAFYGIKSIEQ
TSLMIFGLLMIVVLAVFSKKL"
misc_feature complement(380619..381929)
/locus_tag="Amet_0342"
/note="solute carrier 6 subfamily, Fusobacterium nucleatum
Tyt1-like; solute-binding domain; Region:
SLC6sbd_Tyt1-Like; cd10336"
/db_xref="CDD:212043"
misc_feature complement(order(380997..381002,381009..381011,
381876..381878,381885..381887))
/locus_tag="Amet_0342"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(380985..380990,380997..380999,
381258..381260,381264..381266,381279..381284,
381639..381641,381864..381875,381879..381884))
/locus_tag="Amet_0342"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(381183..381185,381279..381281,
381864..381866,381879..381881))
/locus_tag="Amet_0342"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(381093..381095,381105..381107,
381621..381623,381630..381632,381642..381644,
381855..381860))
/locus_tag="Amet_0342"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212043"
gene 382412..383545
/locus_tag="Amet_0343"
/db_xref="GeneID:5310386"
CDS 382412..383545
/locus_tag="Amet_0343"
/EC_number="5.1.3.14"
/note="PFAM: UDP-N-acetylglucosamine 2-epimerase;
KEGG: ctc:CTC00311 UDP-N-acetylglucosamine 2-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine 2-epimerase"
/protein_id="YP_001318232.1"
/db_xref="GI:150388183"
/db_xref="InterPro:IPR003331"
/db_xref="GeneID:5310386"
/translation="MKQLKVMTIFGTRPEAIKMAPLVKALEAEPRIQSTLCVTAQHRE
MLDMVLELFDITPDYDLNVMAHGQTISDITVKVLKGLEAVLEKEKPDIVLVHGDTSTT
FVGALAAFYQKIKVGHVEAGLRSGNIYSPYPEEMNRKLTGTLANLHFAPTQGNFDNLI
KDGINPDKIVITGNTVIDALLQVVKEDYVFQGKTLNQIDYAHKKVIVVTCHRRENWGE
PMENIFQAIREVAQGNEMVEVVFPVHLNPKIQQLAQEFLGDVSNVHLIEPLDYEPFAN
LLNRAYLILTDSGGIQEEAPALGKPILVMRTETERPEAVAAGTVKVIGVKKERIIAEV
KALLSSEKAYETIANAVNPYGDGKACGRIVEGLLNAYSKASEI"
misc_feature 382421..383524
/locus_tag="Amet_0343"
/note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB;
TIGR00236"
/db_xref="CDD:188036"
misc_feature 382424..383515
/locus_tag="Amet_0343"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature order(382448..382450,383216..383218,383222..383224,
383231..383233,383279..383281,383291..383293)
/locus_tag="Amet_0343"
/note="active site"
/db_xref="CDD:99962"
misc_feature order(382625..382627,382631..382636,382655..382657,
382739..382744,382748..382750,382754..382756,
382805..382807,382817..382819,382892..382894)
/locus_tag="Amet_0343"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 383912..384139
/locus_tag="Amet_0344"
/db_xref="GeneID:5310387"
CDS 383912..384139
/locus_tag="Amet_0344"
/note="KEGG: gme:Gmet_3357 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318233.1"
/db_xref="GI:150388184"
/db_xref="GeneID:5310387"
/translation="MGKKRHVMENLSLLSFIGISMIVPIIGGLYIGRWIDARFNTQPI
FLFVFIIMGVIVSFMNLFKVAAKDIEQKKRK"
misc_feature 383945..384106
/locus_tag="Amet_0344"
/note="Putative F0F1-ATPase subunit (ATPase_gene1);
Region: ATPase_gene1; pfam09527"
/db_xref="CDD:204263"
gene 384144..384590
/locus_tag="Amet_0345"
/db_xref="GeneID:5310388"
CDS 384144..384590
/locus_tag="Amet_0345"
/note="KEGG: gsu:GSU0335 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318234.1"
/db_xref="GI:150388185"
/db_xref="InterPro:IPR008413"
/db_xref="GeneID:5310388"
/translation="MSDPLWKTQLRVVKGVLVLNVIIAILFFFAVKEPIPYIMGLLFG
TIIVILNFRLLYLTLEKAVHMVPHKAQAYTASRYMVRYLVTGIVVYISIQAEHIHVLG
TIAGLLSIKLVILKTELFNDKEYFKNIFKKGRRRSDGGRIRTKDNI"
misc_feature 384174..384467
/locus_tag="Amet_0345"
/note="ATP synthase I chain; Region: ATP_synt_I;
pfam03899"
/db_xref="CDD:202801"
gene 384556..385254
/locus_tag="Amet_0346"
/db_xref="GeneID:5310389"
CDS 384556..385254
/locus_tag="Amet_0346"
/note="TIGRFAM: ATP synthase F0, A subunit;
PFAM: H+-transporting two-sector ATPase, A subunit;
KEGG: cpf:CPF_2458 ATP synthase F0, A subunit"
/codon_start=1
/transl_table=11
/product="ATP synthase F0 subunit A"
/protein_id="YP_001318235.1"
/db_xref="GI:150388186"
/db_xref="InterPro:IPR000568"
/db_xref="GeneID:5310389"
/translation="MEVGFGPRIIFNIGNIPISETVVMTWFVMAVLFAFAFVATRRFE
RVPSGLQNVTEAIVDEMNGLTAQTMGADKKGFAPYMGTLFLFLLVSNILGIFGLRPPT
ADVNVTFALALTTFAMIHFFGAKTKGLGTYLKGFLEPFAFMLPLNILSELSLPISLAF
RLFGNIVGGFIIMALLYGGLASVSGMIGLESFPIFAAGIPVALHLYFDLFAGVLQTFI
FVMLSMVFIAMAMD"
misc_feature 384571..385251
/locus_tag="Amet_0346"
/note="F0F1 ATP synthase subunit A; Validated; Region:
PRK05815"
/db_xref="CDD:180273"
gene 385338..385892
/locus_tag="Amet_0347"
/db_xref="GeneID:5310390"
CDS 385338..385892
/locus_tag="Amet_0347"
/note="TIGRFAM: ATP synthase F0, C subunit;
PFAM: H+-transporting two-sector ATPase, C subunit;
KEGG: fnu:FN0363 ATP synthase C chain, sodium ion
specific"
/codon_start=1
/transl_table=11
/product="ATP synthase F0 subunit C"
/protein_id="YP_001318236.1"
/db_xref="GI:150388187"
/db_xref="InterPro:IPR000454"
/db_xref="InterPro:IPR002379"
/db_xref="InterPro:IPR005953"
/db_xref="GeneID:5310390"
/translation="MGTTDFITMFFEWLATFEPRALILASTAIAAGLAMIAGIGPGIG
QGFAAGKGAEAASLNPKSAKSASMVMLLGAAVAETSGILSLVVALIMLYANPLVNTDG
AAIILSASVIGAGLAMIAGIGPGIGQGYAAGKGTEMVGKRPQYQPMIVRTMFLGQAVA
QTTGIYALIIALVLMFANPLVGLL"
misc_feature <385497..385622
/locus_tag="Amet_0347"
/note="ATP synthase subunit C; Region: ATP-synt_C;
cl00466"
/db_xref="CDD:207061"
misc_feature <385743..385871
/locus_tag="Amet_0347"
/note="F0F1 ATP synthase subunit C; Provisional; Region:
PRK13469"
/db_xref="CDD:184068"
gene 385990..386256
/locus_tag="Amet_0348"
/db_xref="GeneID:5310391"
CDS 385990..386256
/locus_tag="Amet_0348"
/note="produces ATP from ADP in the presence of a proton
gradient across the membrane; subunit C is part of the
membrane proton channel F0"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit C"
/protein_id="YP_001318237.1"
/db_xref="GI:150388188"
/db_xref="InterPro:IPR000454"
/db_xref="InterPro:IPR002379"
/db_xref="InterPro:IPR005953"
/db_xref="GeneID:5310391"
/translation="MEPITGKALILAASAIGAGLAMIAGIGPGIGQGYAAGKGAEGVG
RQPEAQGDIVRTMLLGAAVAETTGIYGLIIALILLFANPLVGLL"
misc_feature <386110..>386190
/locus_tag="Amet_0348"
/note="F0F1 ATP synthase subunit C; Provisional; Region:
PRK13469"
/db_xref="CDD:184068"
gene 386324..386830
/locus_tag="Amet_0349"
/db_xref="GeneID:5310392"
CDS 386324..386830
/locus_tag="Amet_0349"
/note="TIGRFAM: ATP synthase F0, B subunit;
PFAM: H+-transporting two-sector ATPase, B/B' subunit;
KEGG: tte:TTE0633 F0F1-type ATP synthase b subunit"
/codon_start=1
/transl_table=11
/product="ATP synthase F0 subunit B"
/protein_id="YP_001318238.1"
/db_xref="GI:150388189"
/db_xref="InterPro:IPR002146"
/db_xref="InterPro:IPR005864"
/db_xref="GeneID:5310392"
/translation="MQGLVEFVLSNFIFTLINLWIMYWVLKKFLFKPTTEYMEGRKKS
IADSIQEAEMKNKEADESKAQYDMKLQDIKKERSQIIDEATKRAEKRGDEIIKAAEDE
AEKVIERAMTEIQREKQKSLNEMKNEISQLAIAAATKVIEKDLDEGTHHKMIQQFIDE
VGETKWQN"
misc_feature 386342..386812
/locus_tag="Amet_0349"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
misc_feature 386345..386806
/locus_tag="Amet_0349"
/note="F0F1 ATP synthase subunit B; Validated; Region:
PRK05759"
/db_xref="CDD:180240"
gene 386818..387360
/locus_tag="Amet_0350"
/db_xref="GeneID:5310393"
CDS 386818..387360
/locus_tag="Amet_0350"
/note="TIGRFAM: ATP synthase F1, delta subunit;
PFAM: H+-transporting two-sector ATPase, delta (OSCP)
subunit;
KEGG: dsy:DSY4915 ATP synthase F1 delta subunit"
/codon_start=1
/transl_table=11
/product="ATP synthase F1 subunit delta"
/protein_id="YP_001318239.1"
/db_xref="GI:150388190"
/db_xref="InterPro:IPR000711"
/db_xref="GeneID:5310393"
/translation="MAELVAKRYAKALFQVAFEMNRYEDVTEELAFVAENLKQHSDLN
ELLKSPVITLGEKKEILSTIFKEQISPEVFNFLRILLDKSRQGDFQEIYEEYKILADA
GKNKIEAVAITALPMDNNDLLKLQVNLSMSSGKNVKLKNEIDPTVIGGVLVKMGDKII
DGTVKARLNQMQDQLLQIIV"
misc_feature 386830..387348
/locus_tag="Amet_0350"
/note="F0F1 ATP synthase subunit delta; Provisional;
Region: PRK13429"
/db_xref="CDD:184049"
misc_feature 386830..387342
/locus_tag="Amet_0350"
/note="ATP synthase delta (OSCP) subunit; Region: OSCP;
pfam00213"
/db_xref="CDD:189453"
gene 387378..388895
/locus_tag="Amet_0351"
/db_xref="GeneID:5310394"
CDS 387378..388895
/locus_tag="Amet_0351"
/EC_number="3.6.3.14"
/note="produces ATP from ADP in the presence of a proton
gradient across the membrane; the alpha chain is a
catalytic subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit alpha"
/protein_id="YP_001318240.1"
/db_xref="GI:150388191"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR000793"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005294"
/db_xref="GeneID:5310394"
/translation="MNLRPEEISSIIQEQIKRYENKLEVKDVGTVIQVGDAIARIHGL
EKCMAGELLEFPGGVYGMALNLEEDNVGCVLLGSDDKIKEGDTVKRTGRIVEVPVGEA
LLGRVVNSLGQPIDGKGPIQTDKYRDIERVAPGIIARKSVHEPLQTGIKAIDSMIPIG
RGQRELIIGDRQTGKTAIAIDTIINQKHSDVICIYVAIGQKKSTVSQIQDTLEKNGAM
EYTIIVASTASELAPLQYIAPYAGCAMGEEFMENGKHVLIIYDDLSKHAVAYRAMSLL
LRRPPGREAYPGDVFYLHSRLLERAAKLSDERGGGSLTALPLIETQAGDVSAYIPTNV
ISITDGQIFLESELFYSGVRPAVNPGISVSRVGGNAQIKAMKKVAGTLRLELAQYREL
AAFAQFGSELDKETQARLAQGERIIEMLKQPQFKPMPVEEQVMMIYAITNKYLTDIEV
VEIGPFESQFISYMVGHHAEVGQAIRDNGVLDQASETTLKEAIEAFKKQFKAERE"
misc_feature 387378..388883
/locus_tag="Amet_0351"
/note="F0F1 ATP synthase subunit alpha; Validated; Region:
PRK09281"
/db_xref="CDD:181753"
misc_feature 387450..387653
/locus_tag="Amet_0351"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature 387657..388478
/locus_tag="Amet_0351"
/note="F1 ATP synthase alpha, central domain. The F-ATPase
is found in bacterial plasma membranes, mitochondrial
inner membranes and in chloroplast thylakoid membranes. It
has also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to...; Region: F1_ATPase_alpha;
cd01132"
/db_xref="CDD:29998"
misc_feature order(387720..387725,387771..387776,387780..387785,
387792..387794,387798..387800,387888..387893,
387978..387989,387993..387998,388005..388007,
388188..388193,388209..388217,388221..388226,
388239..388241,388251..388253,388260..388262,
388272..388274,388383..388385,388392..388394,
388425..388430,388437..388439,388470..388472)
/locus_tag="Amet_0351"
/note="beta subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:29998"
misc_feature 387882..387905
/locus_tag="Amet_0351"
/note="Walker A motif; other site"
/db_xref="CDD:29998"
misc_feature order(387888..387890,387900..387908,387960..387962,
387975..387977,388158..388163,388170..388172,
388335..388337,388383..388385,388422..388424,
388437..388442,388470..388472)
/locus_tag="Amet_0351"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29998"
misc_feature 388146..388160
/locus_tag="Amet_0351"
/note="Walker B motif; other site"
/db_xref="CDD:29998"
misc_feature 388503..388769
/locus_tag="Amet_0351"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:144044"
gene 388933..389802
/locus_tag="Amet_0352"
/db_xref="GeneID:5310395"
CDS 388933..389802
/locus_tag="Amet_0352"
/EC_number="3.6.3.14"
/note="TIGRFAM: ATP synthase F1, gamma subunit;
PFAM: H+-transporting two-sector ATPase, gamma subunit;
KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit"
/codon_start=1
/transl_table=11
/product="ATP synthase F1 subunit gamma"
/protein_id="YP_001318241.1"
/db_xref="GI:150388192"
/db_xref="InterPro:IPR000131"
/db_xref="GeneID:5310395"
/translation="MGVGMQDIKRRIKSVNSTKQITKAMELVSSAKLRKARLKLEKTR
PYFKVVEETINDIVSSTQGIRHDLITPREVKKTAYIVITADRGLSGGYNANVIKAAVN
HLQEKERVSIIAIGKKGRGFFRKRGYDLDGEFTKISENPSFSDAQGIGKLGMELYKQE
LVDELYLVYTEFVSTITHKPRVVKLLPLEPQTGGEGAEKPKERDEFMSYEPSPEEVLD
YLIPKYIESMLYGALVESSTSQQGATRVAMESATDNATDMIDGLQLQYNRARQASITQ
EIAEIVSGAEALK"
misc_feature 388942..389796
/locus_tag="Amet_0352"
/note="F0F1 ATP synthase subunit gamma; Validated; Region:
PRK05621"
/db_xref="CDD:180168"
misc_feature 388948..389796
/locus_tag="Amet_0352"
/note="F0F1 ATP synthase subunit gamma; Provisional;
Region: PRK13422"
/db_xref="CDD:184046"
gene 389821..391215
/locus_tag="Amet_0353"
/db_xref="GeneID:5310396"
CDS 389821..391215
/locus_tag="Amet_0353"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. The beta chain is a
regulatory subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit beta"
/protein_id="YP_001318242.1"
/db_xref="GI:150388193"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR000793"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005722"
/db_xref="GeneID:5310396"
/translation="MATGNVGKLVQIIGAVVDIRFSSEEIPALLSAITIQGPDGLVTV
EVAQHIGDDTARCVAMRSTDGLVRGMEAIDTGAPITVPVGRETLGRIFNVLGEVVDEG
KPVEAKMHLPIHREAPSFEEQEAATEIFETGIKVVDLIAPYARGGKVGLFGGAGVGKT
VLIMELINNIAKEHGGLSVFAGVGERTREGNDLYHEMIESGVIDKTSLVYGQMNEPPG
ARMRVGLTGLTMAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL
ATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQISELG
IYPAVDPLDSNSRILDPATVGQEHYEVARGVQEVLQRYKELQDIIAILGMDELSDEDK
LTVARARRVQRFLSQPFFVAEQFTGMAGKYVPLKETIRGFKEILDGKHDDLPESAFLF
VGSIDEAVEKANKG"
misc_feature 389830..391209
/locus_tag="Amet_0353"
/note="F0F1 ATP synthase subunit beta; Validated; Region:
PRK09280"
/db_xref="CDD:181752"
misc_feature 389848..390048
/locus_tag="Amet_0353"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature 390052..390873
/locus_tag="Amet_0353"
/note="F1 ATP synthase beta subunit, nucleotide-binding
domain. The F-ATPase is found in bacterial plasma
membranes, mitochondrial inner membranes and in
chloroplast thylakoid membranes. It has also been found in
the archaea Methanosarcina barkeri. It uses a...; Region:
F1-ATPase_beta; cd01133"
/db_xref="CDD:29999"
misc_feature order(390121..390123,390172..390174,390178..390183,
390187..390189,390193..390195,390376..390384,
390391..390393,390457..390465,390478..390480,
390571..390573,390580..390582,390592..390594,
390610..390618,390622..390627,390640..390642,
390652..390654,390673..390675,390724..390726,
390733..390738,390748..390750,390769..390771,
390775..390783,390814..390819,390844..390849,
390853..390855,390859..390861)
/locus_tag="Amet_0353"
/note="alpha subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:29999"
misc_feature 390280..390300
/locus_tag="Amet_0353"
/note="Walker A motif; other site"
/db_xref="CDD:29999"
misc_feature order(390286..390288,390295..390303,390373..390378,
390385..390387,390559..390561,390571..390573,
390823..390828)
/locus_tag="Amet_0353"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29999"
misc_feature 390547..390561
/locus_tag="Amet_0353"
/note="Walker B motif; other site"
/db_xref="CDD:29999"
misc_feature order(390817..390819,390823..390825,390841..390846)
/locus_tag="Amet_0353"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29999"
misc_feature 390895..391191
/locus_tag="Amet_0353"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:144044"
gene 391225..391629
/locus_tag="Amet_0354"
/db_xref="GeneID:5310397"
CDS 391225..391629
/locus_tag="Amet_0354"
/note="TIGRFAM: ATP synthase F1, epsilon subunit;
PFAM: H+-transporting two-sector ATPase, delta/epsilon
subunit;
KEGG: tte:TTE0638 F0F1-type ATP synthase epsilon subunit
(mitochondrial delta subunit)"
/codon_start=1
/transl_table=11
/product="ATP synthase F1 subunit epsilon"
/protein_id="YP_001318243.1"
/db_xref="GI:150388194"
/db_xref="InterPro:IPR001469"
/db_xref="GeneID:5310397"
/translation="MASKFRLQIVTPDRTFLDEEVEMAVVRTVSGDEGILSDHMLMVT
PLKIGKMKIQIGDELKEATIAGGFIQVDQDKTIIITDAAEWPEEIDVSRAEEAKQRAE
ERLQKEREEVDTFRAEIALKKATNRLGLTKNK"
misc_feature 391225..391614
/locus_tag="Amet_0354"
/note="F0F1 ATP synthase subunit epsilon; Provisional;
Region: atpC; PRK13446"
/db_xref="CDD:184056"
misc_feature 391237..391473
/locus_tag="Amet_0354"
/note="ATP synthase, Delta/Epsilon chain, beta-sandwich
domain; Region: ATP-synt_DE_N; pfam02823"
/db_xref="CDD:202416"
misc_feature 391483..391608
/locus_tag="Amet_0354"
/note="ATP synthase, Delta/Epsilon chain, long alpha-helix
domain; Region: ATP-synt_DE; pfam00401"
/db_xref="CDD:201209"
gene complement(391786..392205)
/locus_tag="Amet_0355"
/db_xref="GeneID:5310398"
CDS complement(391786..392205)
/locus_tag="Amet_0355"
/note="KEGG: dsy:DSY0901 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318244.1"
/db_xref="GI:150388195"
/db_xref="GeneID:5310398"
/translation="MFKMMTKGDKILIFAILALSVASIFAIPRLLTTVEEGKMVVVNL
DGTVIHRFPLEESPEAEFLEFPFEVRGQSYTGKIEMKDGRVMLHRLSDDISPLSIHTD
MGWISESYQMIVSLPIRLIITIEEEDPPEYDFDIISY"
misc_feature complement(391828..392091)
/locus_tag="Amet_0355"
/note="N-Utilization Substance G (NusG) N terminal (NGN)
insert and Lin0431 are part of DUF1312; Region: DUF1312;
cd09846"
/db_xref="CDD:197363"
gene 392531..393082
/locus_tag="Amet_0356"
/db_xref="GeneID:5310399"
CDS 392531..393082
/locus_tag="Amet_0356"
/note="PFAM: protein of unknown function DUF1694;
KEGG: dsy:DSY3042 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318245.1"
/db_xref="GI:150388196"
/db_xref="InterPro:IPR012543"
/db_xref="GeneID:5310399"
/translation="MSKKSELDKTIEVGLHGTPEIKREEKKKWLGEFRERVVLGLTKE
QAGMMEAERYVEEALRDPMGEMLILNYSLPMKVTSKYMRVAKDLNKEYRSVSTDYPEA
MGIVVASRNAIDRQAVMPEIQGFPEKFKHLRHKELCGECYGELEQIAPDYVSQFKQIN
FFNKMIGIKCSACEKKEDGGPLM"
misc_feature 392531..392887
/locus_tag="Amet_0356"
/note="Protein of unknown function (DUF1694); Region:
DUF1694; pfam07997"
/db_xref="CDD:203836"
gene 393304..394143
/locus_tag="Amet_0357"
/db_xref="GeneID:5310400"
CDS 393304..394143
/locus_tag="Amet_0357"
/note="KEGG: tte:TTE0157 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318246.1"
/db_xref="GI:150388197"
/db_xref="GeneID:5310400"
/translation="MKKIATMAIIFSLFFGLVYYASAYFIKDQENIGDVEIHGIIQAF
EISESRLLEYNTNTTLSIPDTFWSIEEMRIIKKDLIKAFELNGQRKDIINYEHHDPYF
IEDYEEIEGDVIYSNEIQEEGYRQITLTAIENSGKISVIILQATEFDGEKEAHIIVDI
VQNKEYKGIVETCNQSEGILSKYGMDMETTIIIVGTYDEEIETKAQLAKLEEVLHAVM
GQKVEQVQDEHYTMLTGYTSLIPQAIQYDGKTVNLQLAMRYNSYENRTYLWIATPLIT
TTY"
misc_feature 393607..394140
/locus_tag="Amet_0357"
/note="Protein of unknown function (DUF1779); Region:
DUF1779; pfam08680"
/db_xref="CDD:204024"
gene 394175..395428
/locus_tag="Amet_0358"
/db_xref="GeneID:5310401"
CDS 394175..395428
/locus_tag="Amet_0358"
/EC_number="2.5.1.7"
/note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
component of cell wall formation; gram-positive bacteria
have 2 copies of MurA which are active"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="YP_001318247.1"
/db_xref="GI:150388198"
/db_xref="InterPro:IPR001986"
/db_xref="InterPro:IPR005750"
/db_xref="GeneID:5310401"
/translation="MGKIIVEKSGPLQGTIRVSGAKNSVLPILAASLLATEQCTLEDV
PALKDVEVICEVLTSLGADVRRISRDKIEVSAADIDNFEAPYELVRKMRASFLVMGPL
LARLGKARISMPGGCAIGTRPIDLHLKGFKALGAKITMGHGFVEAKADQLIGSRIYLD
FPSVGATENIMMAAVLAKGQTVIENAAEEPELIDLANFLNKMGADVRGAGTDTIKING
VDKLGGAVHPVIPDRVEAGTYMIAAAITGGNLFIDNVMVDHLKPIMAKLRECNIEVSE
EGNGVRVIAENRPKAVDIKTMPYPGFPTDMQAQFMALMCVAEGTSVITETVFENRFMH
VSELKRMGADIKIEGRSTVIEGRTDLQGAPVKATDLRAGAALILTGLVSEGKTEISDI
YHIDRGYVDIEEKLRNVGAIIYREE"
misc_feature 394175..395419
/locus_tag="Amet_0358"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 394208..395401
/locus_tag="Amet_0358"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(394226..394237,394859..394870)
/locus_tag="Amet_0358"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(394241..394243,394451..394453,394463..394465,
394538..394555,394655..394657,394664..394669,
395087..395089)
/locus_tag="Amet_0358"
/note="active site"
/db_xref="CDD:30128"
gene 395535..396539
/locus_tag="Amet_0359"
/db_xref="GeneID:5310402"
CDS 395535..396539
/locus_tag="Amet_0359"
/note="TIGRFAM: SpoIID/LytB domain protein; Sporulation
stage II, protein D firmicutes;
PFAM: Stage II sporulation D domain protein;
KEGG: cth:Cthe_2616 SpoIID/LytB domain protein containing
protein"
/codon_start=1
/transl_table=11
/product="sporulation stage II protein D"
/protein_id="YP_001318248.1"
/db_xref="GI:150388199"
/db_xref="InterPro:IPR013486"
/db_xref="InterPro:IPR013693"
/db_xref="InterPro:IPR014225"
/db_xref="GeneID:5310402"
/translation="MRRIFFTVIAFAVATLLIPMLIIRSCDLSTPEEDKSRDPAVVES
DLKVNVYNHDTGEIMELSLEDYVTNVVAAEVPAAFEVEAIKAQAVAARTFTIWRRYLY
GEEGHPNYPGAILSTSHRDSQEWLSEEQLLERHGSRWMNDYWPKIQEAVEETQGVIMT
YNMQPIEPLYHSTSGGMTENSEDVFASAVPYLRSVSSPYEERSPVLIDEKIVSIKEFI
DTIKDRYPRIELNQSNLDRQIDILERSSGGRITRIKVGSEELTGREIREFFELRSADF
EMNFSQNNVTFITKGYGHGVGMSQWGANGMAEQGYSFEKILEHYYQGVTLSRLVTYRE
"
misc_feature 395538..396521
/locus_tag="Amet_0359"
/note="stage II sporulation protein D; Region: spore_II_D;
TIGR02870"
/db_xref="CDD:163052"
misc_feature 395676..396017
/locus_tag="Amet_0359"
/note="Stage II sporulation protein; Region: SpoIID;
pfam08486"
/db_xref="CDD:203956"
gene 396661..397545
/locus_tag="Amet_0360"
/db_xref="GeneID:5310403"
CDS 396661..397545
/locus_tag="Amet_0360"
/note="PFAM: peptidase M23B;
KEGG: cth:Cthe_2617 peptidase M23B"
/codon_start=1
/transl_table=11
/product="peptidase M23B"
/protein_id="YP_001318249.1"
/db_xref="GI:150388200"
/db_xref="InterPro:IPR002886"
/db_xref="GeneID:5310403"
/translation="MSNENNNKNNNDKKKDKKTLYQFLDKEGFYIILFLCVCIVAVTA
IWVSNQSGDDFISEAPEDRGPDVTLVEGDGEEQEQEEDSRETAIVGESEEEGEPSEET
SQNTEKLEEQEQIQEQESEKPIVEATPKQEEKPKTQEIIEDKDAKEEVAPTASSAQDM
ALPVVGKLGMSFADDRLVYHRTLEQWATHHGIDLHAEEGAPVKTVLTGEVVEVLNDSI
IGITVTIDHGDGLMTRYSNLSTDAMVNVGDHVEKGKTISGVGKTSVNKREEGALLHFQ
VLKDNKPVDPQAYLPKLN"
misc_feature <397051..397536
/locus_tag="Amet_0360"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 397225..397518
/locus_tag="Amet_0360"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 397788..398372
/locus_tag="Amet_0361"
/db_xref="GeneID:5310404"
CDS 397788..398372
/locus_tag="Amet_0361"
/note="PFAM: regulatory protein, TetR;
KEGG: son:SO3684 transcriptional regulator, TetR family"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_001318250.1"
/db_xref="GI:150388201"
/db_xref="InterPro:IPR001647"
/db_xref="GeneID:5310404"
/translation="MARITEPEKMENIKKAVMGAIIEHGYTGMSIASISERAGVSPGY
LYRHYSSKEELVQELVDSQMSKIFNSFIADIDTSSTIYEAAYKTIGKLFMKANEEPIL
AKFMASVVMDVRIPAKNKADNFKNILELASKCIELGKKTGEINQRVTATEVLTVSFTI
PFRYLLISFELDKDKKFTQEEIKRITTICVNAMR"
misc_feature 397788..398342
/locus_tag="Amet_0361"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 397848..397964
/locus_tag="Amet_0361"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 398445..399605
/locus_tag="Amet_0362"
/db_xref="GeneID:5310405"
CDS 398445..399605
/locus_tag="Amet_0362"
/note="TIGRFAM: efflux transporter, RND family, MFP
subunit;
PFAM: secretion protein HlyD family protein;
KEGG: dsy:DSY3360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_001318251.1"
/db_xref="GI:150388202"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:5310405"
/translation="MKRITSILLISLLILTGCTAEHIEEEKEVVKKVYTKTIEASAYS
NDLTLSGNVVPTQMVKLSFKIPGVVSNVLVNEGDVVKEGQPIATMEQGDYLIRVKASQ
AELEAARLQIETEIPAKTNQAKAQYELTKIKYDRVKALFEQGAVSQSQLDEISTKLIV
DENTYNQAVDAKEVAETKLQMAEASLDLANANISDTTIYSPIDGVILQKIVASGETTS
GGHPIVVIGEVNKVWAEIGVSDEYINALRIGQKSDVYIYGIDKTVEGIIDEIAFLADT
KTRTFPVKILLNNPNGELKPGMITKVNLNLSNKEKMLIPLSSVLQLSTGSAVYVYSEE
TQTVSMRMIETGEIVKDKIEVIEGLELDEKIVIEGQFLLREGEQVVVEELIV"
misc_feature 398553..399587
/locus_tag="Amet_0362"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 398619..398762
/locus_tag="Amet_0362"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 399033..399335
/locus_tag="Amet_0362"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 399602..402673
/locus_tag="Amet_0363"
/db_xref="GeneID:5310406"
CDS 399602..402673
/locus_tag="Amet_0363"
/note="PFAM: acriflavin resistance protein;
KEGG: swo:Swol_1118 hypothetical protein"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_001318252.1"
/db_xref="GI:150388203"
/db_xref="InterPro:IPR000097"
/db_xref="InterPro:IPR001036"
/db_xref="GeneID:5310406"
/translation="MIKWSVNHKSIIMLFVVLTLIVGGFLYGAMERQENPTVAAPVAV
IKIIYPGATPEDIEKLIIKPVEDEMNRISDIKTIESFALDSIGIVKVTLKDLSDGKID
EAWNEVKSGLDTVKPLLPPDAHEPTMETDLASSYGIIIGLTSQDYTYQNLSEVANKLR
DELITDPGVKAIDIDGEINDQIHINLDMIKLEQYTVSPTDIATAIKARNINIPGGNLV
MDQVKIPVQVSGEYKDIEEIKNTIVAVSTETGAPIYLKNVADVVRIQEKKEIFASVNN
EKALLIGVEYMDGQNIVAIGERLNTILDEFSMNQLYENMELITLTDQANFTKDAINLF
EKNLLSAILLVVMVVVVTMGLRSAIVVSLPIPIVIVMVFIFMYLSGIPLHQVSIASLI
ISLSLLVANGIVVNDNINVYLEKGHDRLTACTKGIQEVKIPILTSTLTTVASFIPLAM
MQGVSGKFVKSLPVLVSVALIGSYITALTVIPALGYKLLKVKEKDTEGKGIKTKIAKV
LKVDGFSAYILNLYGRLLKGALKIPVLVILFFVGTLIASLWVIPSLGVQLFPPVERDQ
YVIDVTTQDGSDVEKTEKAAIMIGDLLKEDVTINDFAYKVGDGMLQYYVTFIPNDPAS
NKVQFLINGDRDEVSRIEKELSTKVPGVSINIRQLENAAPVTYPVQVRVSGQEISELR
RIAEEIKDITHDVPGIKSIEDNYGYDSYKLNIRVNEEKANLVGVTNYDIASTVRMAVN
GLTVSELKEEDIEKDAIPIILKIPDEKKQDRDVLNNIFITSQITDKNIPINQIAEIET
ETSLNKIVRRNGGRTITVGIFVESRYNSNEISKSVEELLKDYKLPDGYTIEFGGESEE
RSDAFDSMKVPAILAIVIIYLILVIQFGNLKEPLIIMGTIPLSFIGIIWGLKWMGYPI
GFMALLGAISLMGVVVNNGIVLLDFIKLLVKEKDDVKEAIIEACKTRMRPIMIGMITT
VISLIPLALSGGALWAPMATSIIFGMLVSSVLTLLVIPCAYFVIQGKEGLN"
misc_feature 399602..402658
/locus_tag="Amet_0363"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
gene 402814..403077
/locus_tag="Amet_0364"
/db_xref="GeneID:5310407"
CDS 402814..403077
/locus_tag="Amet_0364"
/note="TIGRFAM: Sporulation stage III, transcriptional
regulator SpoIIID;
KEGG: cno:NT01CX_0524 stage III sporulation protein D"
/codon_start=1
/transl_table=11
/product="sporulation stage III, transcriptional regulator
SpoIIID"
/protein_id="YP_001318253.1"
/db_xref="GI:150388204"
/db_xref="InterPro:IPR001034"
/db_xref="InterPro:IPR014208"
/db_xref="GeneID:5310407"
/translation="MKDYIEKRAVEIANYIINQGATVRQTARVFGVSKSTVHKDVTER
LPKINPLVANQVKDILDTNKAERHIRGGKATRMKYKSKDRRVQ"
misc_feature 402817..403059
/locus_tag="Amet_0364"
/note="Stage III sporulation protein D; Region: SpoIIID;
pfam12116"
/db_xref="CDD:152551"
gene 403426..404451
/locus_tag="Amet_0365"
/db_xref="GeneID:5310408"
CDS 403426..404451
/locus_tag="Amet_0365"
/note="TIGRFAM: cell shape determining protein, MreB/Mrl
family;
PFAM: cell division protein FtsA; cell shape determining
protein MreB/Mrl;
KEGG: cth:Cthe_2619 cell shape determining protein,
MreB/Mrl family"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein Mbl"
/protein_id="YP_001318254.1"
/db_xref="GI:150388205"
/db_xref="InterPro:IPR001023"
/db_xref="InterPro:IPR003494"
/db_xref="InterPro:IPR004753"
/db_xref="GeneID:5310408"
/translation="MFGFGSDIGIDLGTASVLVFVKGKGIVLQEPSVVAIDKNTNNIL
AVGEEARRMLGRTPGNIVAIRPLKDGVISDYEVTEKMLRYFIQKTTGKRIFFKPKIIV
CVPSGVTEVEKRAVVDATTEAGARTAYLIEEPIAAAIGAGLDISIPNGHMIVDIGGGT
CDVAVISLGGIVVSTSIKVAGDKFDEAIIRHMRKRHNIMIGERTAENMKIEIGCAYPR
AKEVTMDVRGRNLVSGLPVNIKISSEEILDALEESVSSIADAVHSVLEKTPPELAADI
SDQGIVMTGGGALLWGLDKLISKRTGIPVYIAEDAISCVAKGTGQALDSIHLLESGAN
AKRGGRR"
misc_feature 403432..404436
/locus_tag="Amet_0365"
/note="rod shape-determining protein Mbl; Provisional;
Region: PRK13928"
/db_xref="CDD:184402"
misc_feature 403447..404406
/locus_tag="Amet_0365"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(403456..403458,403462..403473,403633..403635,
403822..403824,403888..403890,403894..403905,
403966..403971,404041..404043,404050..404055,
404278..404286,404290..404295,404359..404361,
404368..404370)
/locus_tag="Amet_0365"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(403456..403458,403888..403890)
/locus_tag="Amet_0365"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(403534..403536,403582..403584,403606..403608,
403867..403869,403873..403875,403933..403935,
404029..404031,404035..404037,404104..404106,
404128..404130,404137..404139,404227..404229,
404236..404238,404332..404334,404404..404406)
/locus_tag="Amet_0365"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(403849..403854,403876..403878,404254..404262,
404335..404337,404341..404343,404350..404352)
/locus_tag="Amet_0365"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 404654..405361
/locus_tag="Amet_0366"
/db_xref="GeneID:5310409"
CDS 404654..405361
/locus_tag="Amet_0366"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: swo:Swol_0941 ATP binding protein of ABC
transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001318255.1"
/db_xref="GI:150388206"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:5310409"
/translation="MIKKAIELKNVRKVYRVGEEKVIALNDISFSVDYGEVCCLLGTS
GSGKSTLLNMMAGLEKPTRGQVIVNGRHVEKMDENRLVQFRQKNIGFVFQSYNLLPTL
TAIENVSLPLTFRGVNKKIRERLAVEMLEAVGLKTHIKHKPTQMSGGQQQRVGIARAF
VTKAPIIFADEPTGNLDSKTTDEVLKLMLRLVKENNQALVLVTHDKGISKFAHKVYYM
LDGNIEKVEVNSSKMGG"
misc_feature 404669..405340
/locus_tag="Amet_0366"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature 404669..405322
/locus_tag="Amet_0366"
/note="This family is comprised of MJ0796 ATP-binding
cassette, macrolide-specific ABC-type efflux carrier
(MacAB), and proteins involved in cell division (FtsE),
and release of liporoteins from the cytoplasmic membrane
(LolCDE). They are clustered together...; Region:
ABC_MJ0796_Lo1CDE_FtsE; cd03255"
/db_xref="CDD:73014"
misc_feature 404777..404800
/locus_tag="Amet_0366"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73014"
misc_feature order(404786..404791,404795..404803,404933..404935,
405161..405166,405263..405265)
/locus_tag="Amet_0366"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73014"
misc_feature 404924..404935
/locus_tag="Amet_0366"
/note="Q-loop/lid; other site"
/db_xref="CDD:73014"
misc_feature 405089..405118
/locus_tag="Amet_0366"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73014"
misc_feature 405149..405166
/locus_tag="Amet_0366"
/note="Walker B; other site"
/db_xref="CDD:73014"
misc_feature 405173..405184
/locus_tag="Amet_0366"
/note="D-loop; other site"
/db_xref="CDD:73014"
misc_feature 405251..405271
/locus_tag="Amet_0366"
/note="H-loop/switch region; other site"
/db_xref="CDD:73014"
gene 405365..407389
/locus_tag="Amet_0367"
/db_xref="GeneID:5310410"
CDS 405365..407389
/locus_tag="Amet_0367"
/note="KEGG: cth:Cthe_3171 S-layer domain-like protein"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_001318256.1"
/db_xref="GI:150388207"
/db_xref="GeneID:5310410"
/translation="MKKRINKISIILLLILILQPFSGYAQDRIQDANLVIGRNYKVPV
LQAGNEERLSIPIENTTSGEAYSIYVSPIIDDPAEFPFVIDQMIPSRRIAAIAGKTRE
NVHFNFQVRSNIEPKTYPIQFNIEYTLPSGNIAKTSETIYIQIENDQEVPNLRLNLMK
MAQDKLVAGQNQPVTLTIENTGDLVAKNIEVQLTGVEANGISLITPIDTHKIDQMEGK
EKKEVFYTIVADDNLEDGTYVLDLIMKYKDEYNKAYEGESKVRIPVVASSSVETSFSL
EKLNYPETAIEPHTDFTISFDLKNTGAEDAQKVKVSIDGGEGILPKSMPIKNIGNLVA
GKQQPVEFTLFAKEGIEDKNYPIQITVEYETDSGRTKEMKSFEQYVGVFVKDKKTSAG
APKIIVDQYDYDGEYVKAGEPFDLTVSFLNTNHEKTVKNIRVSISSTGDVFAPVTGSN
SFFISEITSQGSTMKNISLRPKVDAEYDTHNLFIDIEYEDDQGEAYSVKEMVGIPVVQ
NVTLMIDEVMTSPENYSGNPTALSVEFYNTGRALIRNLVIRTEGDIDITEGSLYIGNL
EPGKNNYYDVTVTPREPGTTTGRMIFEYDDEIDQHYVVEKEFSIEVMDQMEMYPPDDF
GEFEEFNEQSNSPMIRIVVGGGMLLLVIGGFVWRRRKKRRAEAEEVEAYE"
misc_feature 405479..>406471
/locus_tag="Amet_0367"
/note="S-layer domain [Cell envelope biogenesis, outer
membrane]; Region: COG1361"
/db_xref="CDD:31552"
misc_feature 406154..>407104
/locus_tag="Amet_0367"
/note="S-layer domain [Cell envelope biogenesis, outer
membrane]; Region: COG1361"
/db_xref="CDD:31552"
gene 407382..408731
/locus_tag="Amet_0368"
/db_xref="GeneID:5310411"
CDS 407382..408731
/locus_tag="Amet_0368"
/note="PFAM: protein of unknown function DUF214;
KEGG: swo:Swol_0943 ABC transporter component-like
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318257.1"
/db_xref="GI:150388208"
/db_xref="InterPro:IPR003838"
/db_xref="GeneID:5310411"
/translation="MNSLDLFKMALDNLLRRKTRTVLTVLGVVIGTSSIVVMLSLGIA
MNEGFKDQLSNMGDLTMIDVHNYGGYDGDGRSSQSKQVHLNDDAVRRFKQIPKVQGVM
ATKSAYMKMAAGNMVGYVPIIGIDPLVMEAFGFKVAEGRILMPTDKESIVFGKNIAMN
MYNPRLRNAQRGGWGNEQPQVNLISNRLELTTNMEYGEVRNVGQETDQSYTPPKPHNV
QGVGILEESFSEKDYNAYMNITALEKILEEDRRANRQDRSMGNMRQNENDYERVSIKV
NEIDDVLGVQEIVKDMGFQAFSLTDMLNSMQETAQTIQMVLGGIGAVSLFVAAIGITN
TMIMSIYERTREIGIIKVLGANLSDIRKLFLIEAAMIGLLGGIMGLVLSYTISFGLNK
INVGFMGPGGGDTAISIIPIQLSLAAVAFATVIGIVSGYSPARRAMKLSALEAIKSE"
misc_feature 407478..>407867
/locus_tag="Amet_0368"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:205030"
misc_feature 407484..408728
/locus_tag="Amet_0368"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:34229"
misc_feature 408339..408704
/locus_tag="Amet_0368"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene 408878..409969
/locus_tag="Amet_0369"
/db_xref="GeneID:5310412"
CDS 408878..409969
/locus_tag="Amet_0369"
/note="PFAM: flagellar basal body rod protein; protein of
unknown function DUF1078 domain protein;
KEGG: tte:TTE0172 Flagellar basal body and hook proteins"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod protein"
/protein_id="YP_001318258.1"
/db_xref="GI:150388209"
/db_xref="InterPro:IPR001444"
/db_xref="InterPro:IPR010930"
/db_xref="GeneID:5310412"
/translation="MFRGLYTATSGMQTAQRKLDVTSNNIANINTTGFKKDVVAAESF
PEVLIRKINHDIRPRPFNLNSGVEVTREGEALGLSTDAGFFRVETDQGISHNREASFA
PDEDGFLRTYRRDLNGEIDASRGNYLLDATGQRVQVDNGNLEVNNQGQLTFGGGATNL
LYRPLGHVLGTMNSGVRIQKIETNFAQGAVAETANPLDVALNGQGFFRILTPNGEMYT
RNGNFTMSNEGQLVTTEGHEVEGNAGAITFNEAQLMAAENIQITDKGEILLDGVVVDQ
IQIVNINNVKDLRKHGQSYYYGEEGFELELAPFEGEVLQGYLEESNINSIQEMVEMIS
TFRDYEANQKVVQAYDEILQKAVGEIGKL"
misc_feature 408884..>409366
/locus_tag="Amet_0369"
/note="flagellar hook-basal body protein; Region:
FlgEFG_subfam; TIGR03506"
/db_xref="CDD:211830"
misc_feature 408890..408982
/locus_tag="Amet_0369"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 409277..409957
/locus_tag="Amet_0369"
/note="flagellar basal body rod protein FlgG; Reviewed;
Region: flgG; PRK12819"
/db_xref="CDD:183769"
misc_feature 409736..409945
/locus_tag="Amet_0369"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 410019..410813
/locus_tag="Amet_0370"
/db_xref="GeneID:5310413"
CDS 410019..410813
/locus_tag="Amet_0370"
/note="PFAM: flagellar basal body rod protein; protein of
unknown function DUF1078 domain protein;
KEGG: tte:TTE0173 Flagellar basal body and hook proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318259.1"
/db_xref="GI:150388210"
/db_xref="InterPro:IPR001444"
/db_xref="InterPro:IPR010930"
/db_xref="GeneID:5310413"
/translation="MRALWTAASGMKAQQLNIDTVANNMANVNTTAYKAQRTEFKDLL
YANMKRTNLNNGQGSPVNLQVGHGVMPVATSRMFTTGNLEQTANPLDVAIDGEGFLAI
EGPNGEIYYTRDGSLKFSVEMDEMRLVTSEGYTVLSDFDFEIIFDEGMKNIAISEGGV
ITAENEFGDIEELDTIKLVKFLNPQGLESVGRNLYKETVASGEEIPMEGEGRTSSILQ
GFLETSNVQIVDEMVKMITAQRAYETSSKTIQTADEMLGMANNLRR"
misc_feature 410019..410807
/locus_tag="Amet_0370"
/note="flagellar basal body rod protein FlgG; Provisional;
Region: flgG; PRK12693"
/db_xref="CDD:183687"
misc_feature 410571..410804
/locus_tag="Amet_0370"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 410844..411215
/locus_tag="Amet_0371"
/db_xref="GeneID:5310414"
CDS 410844..411215
/locus_tag="Amet_0371"
/note="KEGG: dps:DP2685 similar to flagellar muramidase
protein (FlgJ)"
/codon_start=1
/transl_table=11
/product="rod binding protein-like protein"
/protein_id="YP_001318260.1"
/db_xref="GI:150388211"
/db_xref="InterPro:IPR000423"
/db_xref="GeneID:5310414"
/translation="MNPMNAIHRYVPTKSAPELKGNEDAQGLKEVTQDFEAVFINMML
KQMRATVSEGGLTEKSYGRGIFEEMQDENMAEVMSKGRGIGIAQELYRQLSHHVQPRA
TVSQEASNQETEAIDEVVTED"
misc_feature 410976..411122
/locus_tag="Amet_0371"
/note="Rod binding protein; Region: Rod-binding;
pfam10135"
/db_xref="CDD:204403"
gene 411234..411677
/gene="fabZ"
/locus_tag="Amet_0372"
/db_xref="GeneID:5310415"
CDS 411234..411677
/gene="fabZ"
/locus_tag="Amet_0372"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_001318261.1"
/db_xref="GI:150388212"
/db_xref="InterPro:IPR010084"
/db_xref="InterPro:IPR013114"
/db_xref="GeneID:5310415"
/translation="MELNNIEIQKIIPHRYPFLLVDKMVEVELGKRGVGIKNVTANEP
FFQGHFPGNPIMPGVLMTEALAQVAALICMGLEENKGKLGVFTGIDKCKFRRQVVPGD
VLRLEIEMTALRRGIGKAEGKAYVGEELACSASLTFALINPNTDK"
misc_feature 411267..411656
/gene="fabZ"
/locus_tag="Amet_0372"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene 411885..412724
/locus_tag="Amet_0373"
/db_xref="GeneID:5310416"
CDS 411885..412724
/locus_tag="Amet_0373"
/note="PFAM: protein of unknown function DUF1568;
KEGG: swo:Swol_0164 transposase and inactivated
derivatives-like protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318262.1"
/db_xref="GI:150388213"
/db_xref="InterPro:IPR011462"
/db_xref="GeneID:5310416"
/translation="MGRKPRVEYKGAIYHVIKRGNNREYIFQNREDKESLLACLEDAN
KEEVFNLLGYVIMDNHYHLMIETKEKPLHKIMQKVNNTYSKNYNKRHKRSDHVFGGRY
KGILVKDDKYLFSLLRYIHYNPVRAKMCENIAQYNWSSDQFYRNNIKKQVHIDKILNM
FSPNRRMALEAYERFMDQKEPIIKAKDFYEEGHEIGELEKENNSSPTESRNNNKNLDE
ILRDVVDNEDDFQLIKSGSRKRYLRNYKISYVKAAVEQGYTFKEIGNHVEVSAVAANK
MVQ"
misc_feature 411885..412301
/locus_tag="Amet_0373"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG1943"
/db_xref="CDD:32126"
gene 412896..413783
/locus_tag="Amet_0374"
/db_xref="GeneID:5310417"
CDS 412896..413783
/locus_tag="Amet_0374"
/note="PFAM: protein of unknown function DUF368;
KEGG: oih:OB0592 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318263.1"
/db_xref="GI:150388214"
/db_xref="InterPro:IPR007163"
/db_xref="GeneID:5310417"
/translation="MEKAMEDVIGVSKNQTLLLMKGIILGMGVIIPGISGGTIMIAFG
MYEKMLDDLLKFHIKPYITMGFGALLGVFTGSFAFSYLFEFYRNPTSAFILGCLLMSI
PFILKRSKGYTRKDVALFVIGGILAYGLMEMPTLLQAGGLTAFHIFIAGFISSSTMMI
PGVSGSAVLIILGIYEEMLLVINGFQLINLSIFVMGAALGVFILAKLLKTLFSIHGSQ
ILFFFSGLILGSSRILFPSELEFLSLITFILGVGVVYKWGNFKYKKNSPFLGRTYKSI
KSNIETLSYKIGQVIRRKQ"
misc_feature 412989..413603
/locus_tag="Amet_0374"
/note="Domain of unknown function (DUF368); Region:
DUF368; pfam04018"
/db_xref="CDD:190832"
gene 413899..414822
/locus_tag="Amet_0375"
/db_xref="GeneID:5310418"
CDS 413899..414822
/locus_tag="Amet_0375"
/note="TIGRFAM: UTP-glucose-1-phosphate
uridylyltransferase;
PFAM: Nucleotidyl transferase;
KEGG: cpr:CPR_0469 UTP-glucose-1-phosphate
uridylyltransferase"
/codon_start=1
/transl_table=11
/product="UTP-glucose-1-phosphate uridylyltransferase"
/protein_id="YP_001318264.1"
/db_xref="GI:150388215"
/db_xref="InterPro:IPR005771"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:5310418"
/translation="MKVRKAVIPAAGLGTRFLPATKALPKEMLPIVDKPTLQYIIEEA
VDSGIEEILIITGRNKSSIENHFDKSIELELELEKKGKDELLKQVRAISDMVNIHYIR
QKEPKGLGHAIHCAKSFIGNEPFAVMLGDDIVENDKPCLEQMMEMYDEYKTTILGVQE
VPKESVNKYGIVDGMHIEGGIYKVKDLVEKPSPQEAPSNIAILGRYIINPEIFDILEN
TKPGKGGEIQLTDALKELAHREAMYAYVFEGRRHDVGDKQGFLEATVEFALKREDLRE
GFLNYLEDVVKKERESKALEEVAVTTEQKSS"
misc_feature 413908..414708
/locus_tag="Amet_0375"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature 413908..414687
/locus_tag="Amet_0375"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature order(413923..413934,413974..413979,414205..414207,
414214..414225,414283..414285,414289..414294,
414403..414408,414463..414468,414502..414504,
414586..414588)
/locus_tag="Amet_0375"
/note="active site"
/db_xref="CDD:133021"
misc_feature order(413935..413937,413944..413958,413962..413970,
413980..413988,413992..414000,414010..414012,
414082..414084,414088..414096,414100..414102,
414112..414117,414199..414204,414208..414210,
414214..414216,414400..414402,414574..414576,
414646..414648,414664..414672,414676..414684,
414688..414696,414703..414708)
/locus_tag="Amet_0375"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene 414963..415133
/locus_tag="Amet_0376"
/pseudo
/db_xref="GeneID:5310419"
gene 415537..415785
/locus_tag="Amet_0377"
/db_xref="GeneID:5310420"
CDS 415537..415785
/locus_tag="Amet_0377"
/note="TIGRFAM: prevent-host-death family protein;
KEGG: chy:CHY_2512 prevent-host-death family protein"
/codon_start=1
/transl_table=11
/product="prevent-host-death family protein"
/protein_id="YP_001318265.1"
/db_xref="GI:150388216"
/db_xref="InterPro:IPR006442"
/db_xref="GeneID:5310420"
/translation="MPNIKPVSDLRNYNEVLKDIAIGSPVFLTKNGRGKFAIVDIEEY
EKNQATIKLLSKLMEAENRIKTDDDWMTEDQVKEKLGI"
misc_feature 415552..415698
/locus_tag="Amet_0377"
/note="Antitoxin Phd_YefM, type II toxin-antitoxin system;
Region: PhdYeFM_antitox; cl09153"
/db_xref="CDD:208990"
gene 415790..416116
/locus_tag="Amet_0378"
/db_xref="GeneID:5310421"
CDS 415790..416116
/locus_tag="Amet_0378"
/note="TIGRFAM: addiction module toxin, RelE/StbE family;
PFAM: plasmid stabilization system;
KEGG: dsy:DSY2129 hypothetical protein"
/codon_start=1
/transl_table=11
/product="addiction module antitoxin"
/protein_id="YP_001318266.1"
/db_xref="GI:150388217"
/db_xref="InterPro:IPR007712"
/db_xref="InterPro:IPR012753"
/db_xref="GeneID:5310421"
/translation="MHKLRINPMATEDLIEIRDYIMKELENPTAAVNVVRKIIESYEQ
LKEFPMLGVDLSTKVNVQTDFRYLVSGSYIVFYQADNESVSIYRILYARRDYLKILFP
NEVDID"
misc_feature 415790..416095
/locus_tag="Amet_0378"
/note="Plasmid stabilization system protein [General
function prediction only]; Region: ParE; COG3668"
/db_xref="CDD:33466"
gene 416849..417502
/locus_tag="Amet_0379"
/db_xref="GeneID:5310422"
CDS 416849..417502
/locus_tag="Amet_0379"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318267.1"
/db_xref="GI:150388218"
/db_xref="GeneID:5310422"
/translation="MKKRTLIITVSIIILLLATGMVGYRYFLGPNEKLRAEISQEFEI
GFFDFSDLNLDEKLVNEAQAVGGETDASQTDKEKDVVENSKENEDSYVDMIEKKVVTI
TEENIANKYTPRFQRLQDQVVDRIDGLMEIGYKEYQEKRGTKDFSRTSFARKYMQAAT
MLEDSVDSSFNELLIEMERELKANELPLGLLKEAKTTYDNAKKAKRSELYKMYEKFL"
gene 417588..417758
/locus_tag="Amet_0380"
/db_xref="GeneID:5310423"
CDS 417588..417758
/locus_tag="Amet_0380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318268.1"
/db_xref="GI:150388219"
/db_xref="GeneID:5310423"
/translation="MKPGGAFYWEENIANKYTPRFQRLQDQVVDRIDELMEIELKANE
LPLASLKEAKTT"
gene 417816..418511
/locus_tag="Amet_0381"
/db_xref="GeneID:5310424"
CDS 417816..418511
/locus_tag="Amet_0381"
/note="PFAM: regulatory protein GntR, HTH; GntR domain
protein;
KEGG: cac:CAC2546 transcriptional regulator, FadR family"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_001318269.1"
/db_xref="GI:150388220"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR011711"
/db_xref="GeneID:5310424"
/translation="MSMEQKTDKVYQQVIDYISCLIKEGILKKGDKIPTERDLSVRFG
VSRNSIREALKILEVIGLVVRRQGDGTFIKEQFDDCLTEPLSMVFMLEEIGIDDIFQF
RNMIEVQTVVLAASRITDAEIQQLEMTYQNMIRETDDVNKAKYDIEFHHIIAKASRNV
LILNSYNVMSSLMGAFINNIRIKVLEGGGTEEVVSAIHKKILEALKSRDPQLAEVAIK
EHMEVINSMFKQV"
misc_feature 417816..418505
/locus_tag="Amet_0381"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 417840..418037
/locus_tag="Amet_0381"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(417840..417842,417846..417848,417915..417917,
417921..417926,417948..417962,417966..417971,
417978..417980,418008..418013,418017..418028)
/locus_tag="Amet_0381"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 418107..418481
/locus_tag="Amet_0381"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 418827..418943
/locus_tag="Amet_0382"
/pseudo
/db_xref="GeneID:5310425"
gene complement(419542..420306)
/locus_tag="Amet_0383"
/db_xref="GeneID:5310426"
CDS complement(419542..420306)
/locus_tag="Amet_0383"
/note="PFAM: helix-turn-helix domain protein;
bacteriophage CI repressor;
KEGG: ecv:APECO1_376 putative repressor protein encoded
within prophage CP-933O"
/codon_start=1
/transl_table=11
/product="XRE family plasmid maintenance system antidote
protein"
/protein_id="YP_001318270.1"
/db_xref="GI:150388221"
/db_xref="InterPro:IPR001387"
/db_xref="InterPro:IPR010744"
/db_xref="GeneID:5310426"
/translation="MIENFSTVGKRIEKSLEVLGIKAVDVCRSSGISKNAMSNYINGN
RVPNAEILVKLSDVLKVSIDWLLTGKGKGPEKAANFIFQEPVIEQDLVAESEASYFHQ
VEDIVRYNIEIGKNITHVREDAKMDVEQLAAAINIKPQALKDYESGKKVIPSYVIHRI
CKELSVLPLFLLDPEEVIDKEYKSENADFGHSLTQFEQDTLHFFRELSRSDQEEIAHM
ITFKHEKGNKKGRSSRSTNGDNRNDEQAAASEKKMA"
misc_feature complement(420109..420282)
/locus_tag="Amet_0383"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(420181..420183,420256..420258,
420268..420270))
/locus_tag="Amet_0383"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(420184..420186,420259..420261))
/locus_tag="Amet_0383"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(420178..420183,420193..420195,
420202..420204,420235..420240))
/locus_tag="Amet_0383"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature complement(<419743..419973)
/locus_tag="Amet_0383"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature complement(419794..419967)
/locus_tag="Amet_0383"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(419866..419868,419941..419943,
419953..419955))
/locus_tag="Amet_0383"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(419869..419871,419944..419946))
/locus_tag="Amet_0383"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(419863..419868,419878..419880,
419887..419889,419920..419925))
/locus_tag="Amet_0383"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 420608..420793
/locus_tag="Amet_0384"
/db_xref="GeneID:5310427"
CDS 420608..420793
/locus_tag="Amet_0384"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318271.1"
/db_xref="GI:150388222"
/db_xref="GeneID:5310427"
/translation="MKMMVEKDVVINKIIKLIVDEMEEEGKGNLTALYTIGVLKEAIG
RVEGTALMTPARKSIRD"
gene 421139..421345
/locus_tag="Amet_0385"
/db_xref="GeneID:5310428"
CDS 421139..421345
/locus_tag="Amet_0385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318272.1"
/db_xref="GI:150388223"
/db_xref="GeneID:5310428"
/translation="MKLTLQHIRNLNEQQWDRLKEITLLHTRLAKEHIDIFNTPGVEL
RKQELKRQIVALRSERDEILATAS"
gene 421320..421790
/locus_tag="Amet_0386"
/db_xref="GeneID:5310429"
CDS 421320..421790
/locus_tag="Amet_0386"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318273.1"
/db_xref="GI:150388224"
/db_xref="InterPro:IPR000977"
/db_xref="GeneID:5310429"
/translation="MKYWLLLAKEGGVYVIEKRKVGKGGSIRYKNKNYTSNVLKKYVG
RTFEIEPLLEVNVLWVFDDEKSRICEARQEGVSFEETFGIAKKEEVKGDDDVFFGLGK
KLKDYKEKELAKELANRHGAKMIKVSPGQFYQVKGNGSRIKEEGPATIFVIRNN"
misc_feature 421329..421532
/locus_tag="Amet_0386"
/note="Mu transposase, C-terminal; Region: Mu-transpos_C;
pfam09299"
/db_xref="CDD:117843"
gene 421815..422039
/locus_tag="Amet_0387"
/db_xref="GeneID:5310430"
CDS 421815..422039
/locus_tag="Amet_0387"
/note="KEGG: tte:TTE2173 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318274.1"
/db_xref="GI:150388225"
/db_xref="GeneID:5310430"
/translation="MRKNKMTEFGLWIKQSLLELDMTQRELSESIGIDERFLSMILYG
LRPGYDYRDKIRSVIEGEQAKKIAVKSKTA"
misc_feature 421851..>421952
/locus_tag="Amet_0387"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
gene 422198..424255
/locus_tag="Amet_0388"
/db_xref="GeneID:5310431"
CDS 422198..424255
/locus_tag="Amet_0388"
/note="PFAM: Transposase-like, Mu-like;
KEGG: bcz:pE33L466_0072 transposase"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001318275.1"
/db_xref="GI:150388226"
/db_xref="InterPro:IPR001584"
/db_xref="InterPro:IPR015378"
/db_xref="GeneID:5310431"
/translation="MEAYISIEEAAKLEGVAYYTLYRKIQRNKEDFETTIEPSESGGK
DRVMVALDSLTKKARRTYKAKHEVPDNKEEAPWYTQVDISWYRKNYSKYFYEAVEISK
QIEIYLNYEGKNKTKFATEIAKKLEVSSRTLLSRVKDYIEAKAWADTMEEASKKNYDY
FMVLALCRKPREKNQFPSLTEPVKTKIENIFYSKVFQENNQPLTNLYEDLEDWTIEKG
LPLPSYDTVWRYIGHIEKEDGEGATALVARGKRQWKNDFMMKRKRDVESLQVLEVLQG
DVHSFDCWVSVRRSNGKLQAIRPALVGWLDMRSRTLVGWAVAENPDALIIKKSLINAF
YPKVNSLLPYGVCKYLLIDNGKEYTAESLTGRSRKIRVQLDADVKGFYRSIGIEDDMR
SLPFQPWSKAQVERFFGTVCEKFTKRTISYTGTLTGSKTDAKVKKDIAKMLENGELMT
MEEFAQKFEKWVVEKYHTRVHGGLKDQGEESPVPVDVFHHAERYYKAAPPLEYALSLL
LESEERSVTNMGIKITRDGKAIYYQNQDLSKYIGQRVDIRYHPEDITRIYVYNKEGKK
VCEAVSYELLRIAPKLSQKAFEEHNKDQKRHLRNETDKVKYRQMTYEERQQHEKDIIE
NADKKIVTPEMANKNDKVVAIPQDEQYKDELKHKKTKQKSDENEYFERQSAKALAALK
KLG"
misc_feature 423008..423430
/locus_tag="Amet_0388"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 423737..423907
/locus_tag="Amet_0388"
/note="Mu transposase, C-terminal; Region: Mu-transpos_C;
pfam09299"
/db_xref="CDD:117843"
gene 424271..425194
/locus_tag="Amet_0389"
/db_xref="GeneID:5310432"
CDS 424271..425194
/locus_tag="Amet_0389"
/note="KEGG: cjr:CJE0269 bacteriophage DNA transposition
protein B, putative"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318276.1"
/db_xref="GI:150388227"
/db_xref="InterPro:IPR000629"
/db_xref="GeneID:5310432"
/translation="MAVQLYRNAPELAQEMEELLKRTGMSKEKASKEIGYSRTALSRY
LSGDYESIELELAIRRFLDEKQAGKEKVVRQLRDELFITRDVEDIMGVCQGCQEDQGL
GVIVGKSGFGKTETLKEYAKLDRVCYVECDDSMGSRDLVEAIEEAIGLPQGYGSIWKR
VKGIKEFFEVNRGYLLIVDEADKLVTKYTQKKMEILRTIFDQDTVGLVIAGEPKLESM
VKGFIARFANRVDFCITLKGLSREEVIEYLQFCKISDRAREELIIRGTNSNTGCFRLL
DRTLRNVLRLVEDEREIDLKTIEKVSKMMML"
misc_feature 424316..424459
/locus_tag="Amet_0389"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
misc_feature 424559..424924
/locus_tag="Amet_0389"
/note="AAA domain; Region: AAA_22; pfam13401"
/db_xref="CDD:205579"
gene 425194..425448
/locus_tag="Amet_0390"
/db_xref="GeneID:5310433"
CDS 425194..425448
/locus_tag="Amet_0390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318277.1"
/db_xref="GI:150388228"
/db_xref="GeneID:5310433"
/translation="MASGCILDTCWVCDDLVWEDDWILYNEQFIHPACAENKTQLMKD
KASRLHYEDEMTEDLQMLKRMLGSCQKEIERLENLIKRRA"
gene 425450..425677
/locus_tag="Amet_0391"
/db_xref="GeneID:5310434"
CDS 425450..425677
/locus_tag="Amet_0391"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318278.1"
/db_xref="GI:150388229"
/db_xref="GeneID:5310434"
/translation="MEDVLIKMEGAAQRKRLEENLKVNINSLVEGLETKERTIEEIKN
YIEKEYIGKGALKLFINRVEAKGNVGISKGR"
gene 425655..426410
/locus_tag="Amet_0392"
/db_xref="GeneID:5310435"
CDS 425655..426410
/locus_tag="Amet_0392"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318279.1"
/db_xref="GI:150388230"
/db_xref="GeneID:5310435"
/translation="MEFQKGDRIKVTCNSKKPKSSKSFEGIVVGEYDGFITIHQGSYI
VTTSKLEVINGNTTIEVLEKGETETVPRKKSIDKETLLKECIAYGWNNTAIETISEKY
GLSKLTIKTYYGKWGIADLIAEKRDKSEVDELFENIRKEEDEIDSKKETDLDWKANDR
LTKVINEAGLSKVRTKAQEAIGEAPHSEKGTLRKVMTIYKGDIMEYEIDKATIKIRNE
ENYDNYIIVAKEEILKFVNELHELTKNIIEEAK"
gene 426394..426651
/locus_tag="Amet_0393"
/db_xref="GeneID:5310436"
CDS 426394..426651
/locus_tag="Amet_0393"
/note="PFAM: SpoVT/AbrB domain protein;
KEGG: swo:Swol_0047 transcription regulator AbrB"
/codon_start=1
/transl_table=11
/product="transcriptional regulator/antitoxin MazE"
/protein_id="YP_001318280.1"
/db_xref="GI:150388231"
/db_xref="InterPro:IPR007159"
/db_xref="GeneID:5310436"
/translation="MRRQNNMKTKKINKSGGFTIPSDIRREIDMDKGQAVDIEVEAGK
LIISKHTPRCMFCRTIDGVVRYQNNHVCSKCIKEMGDKVDG"
misc_feature 426421..426552
/locus_tag="Amet_0393"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 426644..427297
/locus_tag="Amet_0394"
/db_xref="GeneID:5310437"
CDS 426644..427297
/locus_tag="Amet_0394"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318281.1"
/db_xref="GI:150388232"
/db_xref="GeneID:5310437"
/translation="MDNIKKVVNELAKWDALMADGRKEMNKHKLSIQNEAASALENSK
VKQVKFYGDDSNCAIVTTAEKVELVSIEYLRGVIPENILKDFAKEEIQYKLTAPFKNV
VGPLVSGNYTERKVLDIIEEMNLSEGKAKVAKKKLKGNFEKDVEFLKTIGHSQEEAEH
WAYFITEAAAWERIVNFMEVSGYEEGTPGFQDAIKKLKHAVIVDETLKIGVEYEKDE"
gene 427347..427775
/locus_tag="Amet_0395"
/db_xref="GeneID:5310438"
CDS 427347..427775
/locus_tag="Amet_0395"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318282.1"
/db_xref="GI:150388233"
/db_xref="GeneID:5310438"
/translation="MEVITGLQIKKIWATAREIGLEKEDLYTIIYRESKKESMKQLTK
AQANKVIDAMVRPKKKKKQKRTDDGGRSSTKAQRQTIYRMTEELGWNNDNDRINGFVK
KMFEVERLEWLDGYGCSRLIEILKKMIKRIEVEKVVEKDG"
misc_feature 427416..427739
/locus_tag="Amet_0395"
/note="Protein of unknown function (DUF1018); Region:
DUF1018; cl01815"
/db_xref="CDD:154603"
gene 427768..427992
/locus_tag="Amet_0396"
/db_xref="GeneID:5310439"
CDS 427768..427992
/locus_tag="Amet_0396"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318283.1"
/db_xref="GI:150388234"
/db_xref="GeneID:5310439"
/translation="MAKQMISIKIDIEFDIEDMKKSLKERGILPNKANTDRMVKMIRS
GRFLMNKGFLAGQPMDKETLLMYGFTFENE"
gene 428063..428224
/locus_tag="Amet_0397"
/db_xref="GeneID:5310440"
CDS 428063..428224
/locus_tag="Amet_0397"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318284.1"
/db_xref="GI:150388235"
/db_xref="GeneID:5310440"
/translation="MLPSKEEFVEKVIELRTKQREQKQRDYMAYVKGATVRMASRKCN
WKLRGSRSS"
gene 428229..428885
/locus_tag="Amet_0398"
/db_xref="GeneID:5310441"
CDS 428229..428885
/locus_tag="Amet_0398"
/note="TIGRFAM: RNA polymerase sigma-70;
PFAM: sigma-70 region 2 domain protein;
KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor"
/codon_start=1
/transl_table=11
/product="FliA/WhiG family RNA polymerase sigma factor"
/protein_id="YP_001318285.1"
/db_xref="GI:150388236"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:5310441"
/translation="MEKLLHKVNFKEPMTEEESKRLINQFRELNNEEIRKHLIERNLR
LVAYEAYKYKNQDSEDIFSVGCIGLIKAIDSYDPSKQTRFDTYANRCIQNEILLYIKR
LKKGSRWTFVRLDAKNLSFDDGSSIYNFETLASDENLEESFIGREEKLIARSIIKDNL
IEESIEEQSTKRQMAIRLRYQGLTQIDVSQRLGISQSYVARIEKRYQDKLYQKLRKMF
"
misc_feature 428259..428876
/locus_tag="Amet_0398"
/note="DNA-directed RNA polymerase specialized sigma
subunit [Transcription]; Region: FliA; COG1191"
/db_xref="CDD:31384"
misc_feature 428340..428543
/locus_tag="Amet_0398"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 428703..428858
/locus_tag="Amet_0398"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(428733..428735,428763..428765,428778..428783,
428811..428813,428817..428822,428826..428834,
428838..428843,428847..428849)
/locus_tag="Amet_0398"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 428892..429293
/locus_tag="Amet_0399"
/db_xref="GeneID:5310442"
CDS 428892..429293
/locus_tag="Amet_0399"
/note="KEGG: pol:Bpro_3769 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318286.1"
/db_xref="GI:150388237"
/db_xref="GeneID:5310442"
/translation="MLLMKSEEWKKVEVKLESFYTSVKLDCDGYEVTLKLERMGQFKN
VIAVYVNGSIKGKWYLEDCEERRRFFKPTTRSMFSQKDKKEAYKKLSKKLLKEMEERF
KYTTYQPYWTSFKSLKSHLIKNNNVIELIAS"
gene 429587..429898
/locus_tag="Amet_0400"
/db_xref="GeneID:5310443"
CDS 429587..429898
/locus_tag="Amet_0400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318287.1"
/db_xref="GI:150388238"
/db_xref="GeneID:5310443"
/translation="MKRKSKEVMKLELLVKVKNLKVGEKITIQLQSWIGSVSDEKVTY
MGEIRHHGYYKRKQGGSWALSPCEIYNIPCYKIQVKPYKKRTIFELALNGDIKEIELG
W"
gene 429942..430280
/locus_tag="Amet_0401"
/db_xref="GeneID:5310444"
CDS 429942..430280
/locus_tag="Amet_0401"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318288.1"
/db_xref="GI:150388239"
/db_xref="GeneID:5310444"
/translation="MYELKCNKCNNEWKTHTISETTRFLCVCSKCGSTDVEPFIKMKC
IKGFSLEMSDDNGFTIENEYTAIEEGTIWNIQKDSFRVVGGEIRLTNDELGWLELSQE
TLEENFETVS"
misc_feature 429942..430052
/locus_tag="Amet_0401"
/note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS;
cl00993"
/db_xref="CDD:207275"
gene 430311..430532
/locus_tag="Amet_0402"
/db_xref="GeneID:5310445"
CDS 430311..430532
/locus_tag="Amet_0402"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318289.1"
/db_xref="GI:150388240"
/db_xref="GeneID:5310445"
/translation="MSVIVVKNNIFNVNKIVNVQRLHITGSNPFYELAVSCIDKKIYR
VRYEMHEEELLEVDFEDFRYKLDQLTLFR"
gene 430558..430683
/locus_tag="Amet_0403"
/db_xref="GeneID:5310446"
CDS 430558..430683
/locus_tag="Amet_0403"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318290.1"
/db_xref="GI:150388241"
/db_xref="GeneID:5310446"
/translation="MKSMTKIKDECLFCSKRICNTRIVRTEEPQYDEVACYQHIE"
gene 430684..430920
/locus_tag="Amet_0404"
/db_xref="GeneID:5310447"
CDS 430684..430920
/locus_tag="Amet_0404"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318291.1"
/db_xref="GI:150388242"
/db_xref="GeneID:5310447"
/translation="MEGGESMFLKKIRPLKAIPINREDNQLDPDNLGLLMSLAHWRDY
EYKYGSFKKAKNIQKSIRNIMATKNAYRKSKSGH"
gene 430939..431118
/locus_tag="Amet_0405"
/db_xref="GeneID:5310448"
CDS 430939..431118
/locus_tag="Amet_0405"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318292.1"
/db_xref="GI:150388243"
/db_xref="GeneID:5310448"
/translation="MKLKVLEEIVDLTKSIIRDISEPDKVCICAKRIQFLAEKEALAK
EDYKRYLGSVLDPRD"
gene 431161..431637
/locus_tag="Amet_0406"
/db_xref="GeneID:5310449"
CDS 431161..431637
/locus_tag="Amet_0406"
/note="PFAM: 3D domain protein;
KEGG: bsu:BG13521 similar to cell wall-binding protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318293.1"
/db_xref="GI:150388244"
/db_xref="InterPro:IPR010611"
/db_xref="GeneID:5310449"
/translation="MVIMASTNTTVKEHQKQNEELWMQIDKLNLEKDLLNKNIINEKE
LIKELQEQIERLEVIRAKVTAYSPSDDRNGINADANPSITSTGKTPGKIYAAADPKRL
PYGTKIYIPNFGEVEIQDTGGALRNDKKNVRIDIFKETYEGAIAWGIQDLDIRLVY"
misc_feature 431332..431625
/locus_tag="Amet_0406"
/note="3D domain; Region: 3D; cl01439"
/db_xref="CDD:207412"
gene 431667..432377
/locus_tag="Amet_0407"
/db_xref="GeneID:5310450"
CDS 431667..432377
/locus_tag="Amet_0407"
/note="KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis
protein, putative; related to
N-acetylglucosamine-1-phosphodiester
alpha-N-acetylglucosaminidase-like protein"
/codon_start=1
/transl_table=11
/product="exopolysaccharide biosynthesis protein"
/protein_id="YP_001318294.1"
/db_xref="GI:150388245"
/db_xref="GeneID:5310450"
/translation="MKYTMRRYDTTIHVLEVPKQGVVIMPCLGDRTKRQPVQQIRHSY
FEANGYKRIGAVNGGFFDGNRTLPYGMFYVDSGFLLSESWAGDAFLELVHENGKLHID
DITANQLKTKYKKANWAISLSYSLVVGGKMNIMKGDKFPFTNQSHPRTLIGDNQENYI
FVVTEGRMTKEKGLTAVESARVMLELGCNTAINADGGGSSAMDVEGKIQNKYYDNRAV
ADGILIYTKEPYEITGKK"
misc_feature 431814..432341
/locus_tag="Amet_0407"
/note="Predicted periplasmic protein (DUF2233); Region:
DUF2233; pfam09992"
/db_xref="CDD:204368"
gene 432497..433174
/locus_tag="Amet_0408"
/db_xref="GeneID:5310451"
CDS 432497..433174
/locus_tag="Amet_0408"
/note="PFAM: cell wall hydrolase/autolysin;
KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL
precursor (Cell wall hydrolase) (Autolysin); RBL04154"
/codon_start=1
/transl_table=11
/product="cell wall hydrolase/autolysin"
/protein_id="YP_001318295.1"
/db_xref="GI:150388246"
/db_xref="InterPro:IPR002508"
/db_xref="GeneID:5310451"
/translation="MAKELAEHNGFKVVLVQPLNGKEVPLSHRVETANAEKVDLYLST
HADASGNAGVRGHWSFYWGTSANSKKFAEIWKKNAKELLENPSRGIIGSQLNHWTNFY
VLRATNMPANLSENGFMTNPLDKELLLSSAFRKNAARAQIKTACEFFGLPFKDLHQEK
KEEQTLEDRHEVITESLNVRNDVMGTIIGKFKAGYKVDKLFDFDGTWWVVRRGELIGF
VNSNFLK"
misc_feature <432497..432952
/locus_tag="Amet_0408"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:31201"
misc_feature 432497..432916
/locus_tag="Amet_0408"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(432629..432631,432839..432841)
/locus_tag="Amet_0408"
/note="active site"
/db_xref="CDD:119407"
misc_feature 433019..433171
/locus_tag="Amet_0408"
/note="Src Homology 3 domain superfamily; Region: SH3;
cl17036"
/db_xref="CDD:213143"
gene 433228..433542
/locus_tag="Amet_0409"
/db_xref="GeneID:5310452"
CDS 433228..433542
/locus_tag="Amet_0409"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318296.1"
/db_xref="GI:150388247"
/db_xref="GeneID:5310452"
/translation="MENWLEKITIDDLDEPYYTIATKIGFEATLELAKMVQGSQIYFP
TIVKSCDPKRKELIKEEFNGYNYRELAAKYGFTERWVREICSELVKKERNKPHHSQLS
LF"
misc_feature <433279..433515
/locus_tag="Amet_0409"
/note="Mor transcription activator family; Region: Mor;
cl02360"
/db_xref="CDD:121262"
gene 433653..434192
/locus_tag="Amet_0410"
/db_xref="GeneID:5310453"
CDS 433653..434192
/locus_tag="Amet_0410"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318297.1"
/db_xref="GI:150388248"
/db_xref="GeneID:5310453"
/translation="MSAIQTALREILVSVAIGLIGLAGAYVTYFLNKASKKMQLETEK
IQEESKREVLQMALWRLEDVAEKTVTKIEEKTAKVLRAAVKSGKKDKTELSDLAMQAY
SEILTTLEPEYKQAIEASLGDAQTYIMNTIEEKVKKVKATKTNTIFPEVKLKANDIEN
ITAKIQKALSNTERLGTRT"
gene 434194..434487
/locus_tag="Amet_0411"
/db_xref="GeneID:5310454"
CDS 434194..434487
/locus_tag="Amet_0411"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318298.1"
/db_xref="GI:150388249"
/db_xref="GeneID:5310454"
/translation="MELNLSWVIQTIIMLGLGTIAYFLKEFKKSIDKNISETNWKTNK
NQEDIKELKEEFNEHKVRIAKEYVHKDDFIRAMSNVDKKLDKIHDVLVVKRSV"
gene 434489..434782
/locus_tag="Amet_0412"
/db_xref="GeneID:5310455"
CDS 434489..434782
/locus_tag="Amet_0412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318299.1"
/db_xref="GI:150388250"
/db_xref="GeneID:5310455"
/translation="MEAQVMKNKMLRGQVLRTLALFYPDSVSVNGIRSALISRGVTFS
ADMTKILHYLEDKEYITVTAIKLSEIKDDDQVELTAKGVDLIEETIDDPGVEL"
gene 434782..435348
/locus_tag="Amet_0413"
/db_xref="GeneID:5310456"
CDS 434782..435348
/locus_tag="Amet_0413"
/note="KEGG: mfa:Mfla_2702 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318300.1"
/db_xref="GI:150388251"
/db_xref="GeneID:5310456"
/translation="MTKERQRNRIKSRVDELPEEIRQLLDDRLADVNFTYHEIADEIT
ELGYEISKSSVGRYALRQNAVVQRMKEVAEQTRIIVDAAKKNNNFDAIGATTSMLTIG
LAQKIATAQEEIENMPIEKAARIVVALERSAVYKEKFKLQYSKGIKDAITAIKMELRI
ELENDPELLMKLSEKVDSISKKMEAKNN"
misc_feature 434812..435309
/locus_tag="Amet_0413"
/note="Protein of unknown function (DUF3486); Region:
DUF3486; pfam11985"
/db_xref="CDD:152420"
gene 435362..435850
/locus_tag="Amet_0414"
/db_xref="GeneID:5310457"
CDS 435362..435850
/locus_tag="Amet_0414"
/note="PFAM: transcription antitermination protein NusG;
SMART: NGN domain protein;
KEGG: tte:TTE0730 Transcription antiterminator"
/codon_start=1
/transl_table=11
/product="NusG antitermination factor"
/protein_id="YP_001318301.1"
/db_xref="GI:150388252"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR003257"
/db_xref="InterPro:IPR006645"
/db_xref="GeneID:5310457"
/translation="MHVKSNEEMKAKKLVEKEIEDIKVIVPQRIIPEKRQGETRHVKK
ILFTGYLFLNVELDVDTYYKLKRIPSIHRFLGLEKPEAIPLEEMQRVLRLCNQGELIG
LSKVIVKEGNKVQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIKV
SE"
misc_feature 435365..435847
/locus_tag="Amet_0414"
/note="Transcription antiterminator [Transcription];
Region: NusG; COG0250"
/db_xref="CDD:30599"
misc_feature 435365..435637
/locus_tag="Amet_0414"
/note="N-Utilization Substance G (NusG) N-terminal (NGN)
domain Superfamily; Region: NGN; cd08000"
/db_xref="CDD:193574"
gene 436107..437564
/locus_tag="Amet_0415"
/db_xref="GeneID:5310458"
CDS 436107..437564
/locus_tag="Amet_0415"
/note="TIGRFAM: phage uncharacterized protein;
KEGG: bha:BH3533 hypothetical protein"
/codon_start=1
/transl_table=11
/product="phage protein"
/protein_id="YP_001318302.1"
/db_xref="GI:150388253"
/db_xref="InterPro:IPR006517"
/db_xref="GeneID:5310458"
/translation="MNIIHELVQGKQNSERSKIIAVGRRDFREYCNRMNPEFFRESRT
FQDKVCKTIQAIYEKKLINPKTNKPYSILVINLPPGHGKSYTAGMFSTWAFGDSVSNQ
IISVSYNQTLSIRFAKMVREHIQDQEIEGDDNYYVVNSFFPSVKIKDGDGAMNLWSLE
GAYMSYLATSFDGSITGMRGNIGIIDDPIKNKSEAVNERVKEAHWDWYKNTFLSRMVE
GAIQIIIQTRWATDDLAGRVIANFPEKTYVLEMPVLNEKDEPLCDEILSYDAIMDKKG
GIDEDIFEANYLQRPIDKKGSLYKEFKTYDVVDDEAFEDIIAYIDTADEGRDYLCMPI
GGVIGRLGYVKDIYYTDEAMEVTEEEVARRLHIYGVKNAIFESNNGGRGFARKVEDIL
RKKYKNKKCNIKWFFQSKNKKTRILVNSSNVIEQVIMPEDWAKKYNEYYLAMAKYQRK
GKNEHDDGPDAITGFVEVINGEVKVKANSIADGYR"
misc_feature 436323..437006
/locus_tag="Amet_0415"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5410"
/db_xref="CDD:34969"
misc_feature 436326..437495
/locus_tag="Amet_0415"
/note="Terminase-like family; Region: Terminase_6;
pfam03237"
/db_xref="CDD:146059"
misc_feature 437088..437498
/locus_tag="Amet_0415"
/note="Phage-related terminase [General function
prediction only]; Region: COG5362; cl02216"
/db_xref="CDD:141379"
gene 437582..438931
/locus_tag="Amet_0416"
/db_xref="GeneID:5310459"
CDS 437582..438931
/locus_tag="Amet_0416"
/note="TIGRFAM: phage-associated protein, HI1409 family;
KEGG: efa:EF1456 conserved hypothetical protein TIGR01555"
/codon_start=1
/transl_table=11
/product="phage-associated protein"
/protein_id="YP_001318303.1"
/db_xref="GI:150388254"
/db_xref="InterPro:IPR006445"
/db_xref="GeneID:5310459"
/translation="MGKRQETKQKKSNSVSSGYKKDFFESSTSSKGTAKDPLSRQKGI
TRHRMSQWMISDIYAVNGIFQNIVNIPAEDATREWISIAGVEDALAQQIMNKLSNLGA
QYNFQEALKFERLRGDGLISIGAKQTGLFKISDPIEISKLTDIDYIHAFSGVKLIDYI
ENEDVFSPEYGSTELFEIQGAGDTKLVHNDRIIHFATRKIEDEKRGIPLIEILYDLLL
IFDNATWSTGQLMYSMVHKRLKTDGVDMSDKELRQNIQNELDFEFNTLSLAVIGKEDD
LDYISPSVSLPLKDMYDFLWEMLSAVSRMPKSHIMGQPQGTVTGGQFDSLNYYMRIAG
MQEAHVREPLEYLIDLSLLASKSGVGTKSIEPDNVKYKMKFNPLWKLDAETDAKIRKM
NAEIDNIYLTHNVRSPDETRKERFNETSMIEKLDMSEEELLKIAREVKKAKEAMDHG"
misc_feature 437672..438829
/locus_tag="Amet_0416"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3567; cl12082"
/db_xref="CDD:159742"
misc_feature 437723..438790
/locus_tag="Amet_0416"
/note="Protein of unknown function (DUF1073); Region:
DUF1073; pfam06381"
/db_xref="CDD:148157"
gene 438924..439706
/locus_tag="Amet_0417"
/db_xref="GeneID:5310460"
CDS 438924..439706
/locus_tag="Amet_0417"
/note="TIGRFAM: phage putative head morphogenesis protein,
SPP1 gp7 family;
PFAM: phage putative head morphogenesis protein, SPP1 gp7;
KEGG: efa:EF1457 minor head protein"
/codon_start=1
/transl_table=11
/product="SPP1 family phage head morphogenesis protein"
/protein_id="YP_001318304.1"
/db_xref="GI:150388255"
/db_xref="InterPro:IPR006528"
/db_xref="GeneID:5310460"
/translation="MAKTPKSRFPSGAAWDYFKEVRGLLISSHANVIETFEKKISHNI
RNDGLNERNDNAILKINLLLDTLRTETLEYYFDENKIVKIADAFTKSVGNNIVQQFAN
QFRSVLGVDPIGRDSKLLDIITAANKENIAYIKSIPENYHNNVETVILQGVRRGRSNK
QIADGLQEAYKTSRTKAKFIARDQTGSLVADINKAKYEQSGLKGFIWSDVGDGNVRDK
HKIFNGKRFLWSEGAGTEGLLPGEDYGCRCTAEVDPDELLNI"
misc_feature 439356..439673
/locus_tag="Amet_0417"
/note="Phage Mu protein F like protein; Region:
Phage_Mu_F; cl10072"
/db_xref="CDD:212307"
gene 439720..440823
/locus_tag="Amet_0418"
/db_xref="GeneID:5310461"
CDS 439720..440823
/locus_tag="Amet_0418"
/note="KEGG: lin:lin1728 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318305.1"
/db_xref="GI:150388256"
/db_xref="GeneID:5310461"
/translation="MLKQRYDRVEVNMMQEDGRGFLNYSLAAVKPGVYPYMDYESGQV
IYELKHPDDLIKVVEQLNNLPITDGHPYELISAHNSKELVAGWTHEKAEMQDVTMVNK
ATVFDAKLIADIVTGLKKECSLGFECRVIDESGVYEGQKYDRRQTDFKFNHLAMVKKG
RCGPECSARTDEKESFAVQIRTDEIENYKEKEGMKEMKIRLDGVEYEVPEVVATRVTA
LETKSDELTKQVGQLEGKLDGKEDEIKKLQEKKDELEKNQLSEIKLDQAIEARLKVVQ
DAAIILDPDYDFKGKKPREIKVDCIKVLGDESFTGEGKSEEYIDARFDTIVDFYKNTE
HSSTGANNLKIKNDAGAGDLVTSMKSKRLQMKK"
misc_feature 439729..440697
/locus_tag="Amet_0418"
/note="Uncharacterized protein conserved in bacteria
(DUF2213); Region: DUF2213; cl15403"
/db_xref="CDD:210097"
gene 440839..441339
/locus_tag="Amet_0419"
/db_xref="GeneID:5310462"
CDS 440839..441339
/locus_tag="Amet_0419"
/note="KEGG: efa:EF1462 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318306.1"
/db_xref="GI:150388257"
/db_xref="GeneID:5310462"
/translation="MTVQKYQPAATGAGRIAEASMSATARSMAAEGSPIKYGKAVKLG
TDKEIQVKAWDGAASTDIFAGIALNSVTGDLDNDQYLQGNPVSVLKKGTVWVKVSADS
AGVTAGQKAAVLEDGDFTAAPLSVDTNGVYGVELEGSEYLTSAAAGELVMLAINLPST
TKVVQL"
gene 441362..442276
/locus_tag="Amet_0420"
/db_xref="GeneID:5310463"
CDS 441362..442276
/locus_tag="Amet_0420"
/note="KEGG: lin:lin1726 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318307.1"
/db_xref="GI:150388258"
/db_xref="GeneID:5310463"
/translation="MRGMHVRQDGMLLNQDLESIDKVAYEAKEEELTARTVVGLKTDD
HEGAETISYDKMTRRGAAKIFAYGASDDIPLVDADVERHTQKVYGVVVGFTIGIQEKR
AAQMANRTIDITKAIAARRAVAEKENRFFYVGSEAHQAEGLLNFTGIQTMPVALNAGE
TSTKWKDKTSEEIIEDIRLARKKVNALPGLTVDTLLLPPNQYEDLDKPVNAENYNMTI
RKWLQEQKWFTNIIRVADLEGAGDSSTDCLAVFDSSKDVVEMALPLDITRHPEVMLAN
MSSQINLEERTGGAIVRFPMGICRADGI"
misc_feature 441377..442273
/locus_tag="Amet_0420"
/note="Encapsulating protein for peroxidase; Region:
Linocin_M18; cl12047"
/db_xref="CDD:209430"
misc_feature 441539..442273
/locus_tag="Amet_0420"
/note="Uncharacterized protein conserved in bacteria
(DUF2184); Region: DUF2184; pfam09950"
/db_xref="CDD:204350"
gene 442292..442624
/locus_tag="Amet_0421"
/db_xref="GeneID:5310464"
CDS 442292..442624
/locus_tag="Amet_0421"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318308.1"
/db_xref="GI:150388259"
/db_xref="GeneID:5310464"
/translation="MEITVINNSKFIKHVGEVTLNIGANEVEKKDWDKESKHPIVKDW
LKDKVVEVKEGLIEDISEITPAGKAIEIVQTTFSQEKLQKWSEQEERKTVLEAIQKQL
KEAIKSGE"
gene 442627..442959
/locus_tag="Amet_0422"
/db_xref="GeneID:5310465"
CDS 442627..442959
/locus_tag="Amet_0422"
/note="KEGG: lin:lin1724 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318309.1"
/db_xref="GI:150388260"
/db_xref="GeneID:5310465"
/translation="METTVERVRAIASHLGGLPDSTIEIYIEDAKLEMNSMEFKASFK
EKIMRYLTAHYATLDNPKIKSEKVDGLGAIAFSDSTSGKEGLKSTEYGQEVLRLLKKS
NLSMLVTS"
misc_feature 442648..442926
/locus_tag="Amet_0422"
/note="Protein of unknown function (DUF4054); Region:
DUF4054; pfam13262"
/db_xref="CDD:205442"
gene 442972..443574
/locus_tag="Amet_0423"
/db_xref="GeneID:5310466"
CDS 442972..443574
/locus_tag="Amet_0423"
/note="KEGG: lin:lin1723 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318310.1"
/db_xref="GI:150388261"
/db_xref="GeneID:5310466"
/translation="MIVKDESRVPELLRELDYLDSHALKAGIMGEEDSELIMIAATHE
FGATIKPKNSKYLAIPLPAAGDTRPADHDDLFVPRGTKILAKPKGQGEKDFIPMFVLL
KSVMIPERSYIRSTFDENKNKINEMGQDLLINVLEGKLTGEQLYNRLGLYLQTLIQRK
IKETKSPANSALTVANKGTDNPLIQTGRLRNAVTYEVVSL"
gene 443571..443933
/locus_tag="Amet_0424"
/db_xref="GeneID:5310467"
CDS 443571..443933
/locus_tag="Amet_0424"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318311.1"
/db_xref="GI:150388262"
/db_xref="GeneID:5310467"
/translation="MMDFTRIIQRWEKQISVQQKTGQYIRGKWTEGISEVRHFRGTFL
PMSDREIRYSEGGSYTTQDKKLYVKEKLKDMQGNELLLKKGDIIIDYDGEYEIDRELE
APEVVNYKKYMTKKKVVK"
gene 443930..444436
/locus_tag="Amet_0425"
/db_xref="GeneID:5310468"
CDS 443930..444436
/locus_tag="Amet_0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318312.1"
/db_xref="GI:150388263"
/db_xref="GeneID:5310468"
/translation="MNEETLGDILEELKAFTNVTKAIFADQKGEKPQYPYITFKIIAE
PDDPSVGIYNYETVESENPNFDSDIEVQKIETSEPSFSINVFAKTAEEAKSVAMKTKD
FFKFHGCEWLKRKNIVTVSTSTIENRDALMIIDYERRYGFDVILRYTRELKKKIETIE
TYSFSRIE"
gene 444448..445452
/locus_tag="Amet_0426"
/db_xref="GeneID:5310469"
CDS 444448..445452
/locus_tag="Amet_0426"
/note="KEGG: efa:EF1469 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318313.1"
/db_xref="GI:150388264"
/db_xref="GeneID:5310469"
/translation="MKKDFVVNISKLTAAIKQRGFGLILVLDTSKDHPYTLYNDIQGV
ADDYAVTDDAYKIASRIFGQNPAPQQVAIFGKEYDSEIGEPADLVTALNELVNVNNDW
FALTCTENANAEVIALSGWIDTQEKMYFTTTQDLSLPAQIESEQTTVMFHHSPEAYVA
EGLAAYMLVRMIGGVTAKFRSISGVLASEITATELAQLHDDNGFSYIRKMGVLQTTEG
KTTSGEYIDVVLGAFFLQFKMEEESALLAVNTEKIAYDNVGIASLVSVAEKVLKLGVT
QGIILRDDDDNGVFQINYVKREDTPTNDIANRVYNGVSWSADLAGAIHEGTISGVLKY
"
misc_feature <444709..445437
/locus_tag="Amet_0426"
/note="Protein of unknown function (DUF3383); Region:
DUF3383; pfam11863"
/db_xref="CDD:152299"
gene 445464..445868
/locus_tag="Amet_0427"
/db_xref="GeneID:5310470"
CDS 445464..445868
/locus_tag="Amet_0427"
/note="KEGG: hit:NTHI1539 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318314.1"
/db_xref="GI:150388265"
/db_xref="GeneID:5310470"
/translation="MVTTYDMNGVNVIVGGRFITGFADGTAITSEANEDKFSVQVGVK
GEVTFSETNDPTGAIGIILKQTSPSVPYLDGLANRKGENAIVSAQIVDLTANGVNAGG
NRCRVTRTSKKEFSNSESKREYRIYVADYSAR"
gene 445924..446178
/locus_tag="Amet_0428"
/db_xref="GeneID:5310471"
CDS 445924..446178
/locus_tag="Amet_0428"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318315.1"
/db_xref="GI:150388266"
/db_xref="GeneID:5310471"
/translation="MFRIVSAFISFPWIGYLLGETTGAFIGLILAVLYIPIEKFQGKP
KEKKEVSAEKVKLTGFPKFARILLIVSFTFTTLVMLLIYL"
gene 446239..446562
/locus_tag="Amet_0429"
/db_xref="GeneID:5310472"
CDS 446239..446562
/locus_tag="Amet_0429"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318316.1"
/db_xref="GI:150388267"
/db_xref="GeneID:5310472"
/translation="MKNKITVEGVEYIFQKVTPREWLKIRERSKNKYGNSSQELLYTE
VFEHVIISPKVGIDDFEEIETLEEVITAAINFQCKRQRKEEQKLSRHGQKELANMETG
DGGQD"
gene 446671..448428
/locus_tag="Amet_0430"
/db_xref="GeneID:5310473"
CDS 446671..448428
/locus_tag="Amet_0430"
/note="TIGRFAM: phage tail tape measure protein, TP901
family;
KEGG: bld:BLi01480 hypothetical protein"
/codon_start=1
/transl_table=11
/product="TP901 family phage tail tape measure protein"
/protein_id="YP_001318317.1"
/db_xref="GI:150388268"
/db_xref="InterPro:IPR010090"
/db_xref="GeneID:5310473"
/translation="MSLRSLIFDVAFNGNASAVVQMDDATNELRETAMGATENIEGMD
SATDELGRTTMGAGKVIEENWKKITLAAGATGLAIEKMARQQAELTTATRGLAVTTDM
TEKEIRTMVGSLTDHTFATEDALAGMDRLQQSGYNTQSQFESLLPVFDTFADATGKDM
VSGIDFFDRTLSALDIPLTEAEEHLDTMTWLITQTTVGMGEMGQLMRREAPTLRAMGL
NVDEIAIAMAGLEAEGIRGPRAVSGFQNALKDAEGDIERFWKELGVSQEVLENQSERL
LEAEGLTQALADANNSGDTAMQKLTSAAEQLAYQYGPLIELSSSLVPLLLAAGPAAKI
ASAAFAVLATPVGAVGGAVAVLGVGVWQLWRNWDAVTERSGDAMDWLLDKSDNVVNGT
IDKFAELGSRASAYVNDMASDIIDSIMSYPPLQAVNEVWDETLAYLNGIDLREVGSDI
VQGLINGITSMGSDAAQAARDVASGIGNSVKSFFGINSDSKLMIEYGGNIVGGLETGI
DSSIPNTTKSMERMTDRALSGAVTNNSKMTFSPNVKIEVGNGTNARQAANELEREFNS
LMDRYAKKLSLRNPALTEA"
misc_feature 447025..447564
/locus_tag="Amet_0430"
/note="Phage-related minor tail protein; Region:
PhageMin_Tail; pfam10145"
/db_xref="CDD:204404"
gene 448441..449031
/locus_tag="Amet_0431"
/db_xref="GeneID:5310474"
CDS 448441..449031
/locus_tag="Amet_0431"
/note="KEGG: lin:lin1715 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318318.1"
/db_xref="GI:150388269"
/db_xref="GeneID:5310474"
/translation="MARVKLGEVEFSTVGNESPEFSNEITDRPVEDIGTVSDHINNKP
TILAIDGYVTGIHAGQKISVLRRYFKTKELLKYVGRNIFDNMSIEIFRTDHNNRVANG
FSFTMLLKEIKVAKSQTIQIPLADPVSPKPPAVAVAAVKTQTKEVTNKGTQSVRGQSA
DTQRYQALYDKYEAEKRSVEAAAKIQASFDRGFRSL"
gene 449028..449357
/locus_tag="Amet_0432"
/db_xref="GeneID:5310475"
CDS 449028..449357
/locus_tag="Amet_0432"
/note="KEGG: efa:EF1475 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318319.1"
/db_xref="GI:150388270"
/db_xref="GeneID:5310475"
/translation="MIDYISIEKNLIPYQFDIQLGGITFTSEINYNGEYDYFTIDLYK
GEEVVLLGEKIVYGKPLFTTFLHLPIPPVLIVPLDLADEETRVTYENLNVKVFLYIIG
DEPDAIQ"
gene 449344..450120
/locus_tag="Amet_0433"
/db_xref="GeneID:5310476"
CDS 449344..450120
/locus_tag="Amet_0433"
/note="KEGG: lin:lin1713 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318320.1"
/db_xref="GI:150388271"
/db_xref="GeneID:5310476"
/translation="MLFNRKVELIIGNKSYLSDNIDIDFSVPFDSDPEPNICDVSIYN
LSMDSINRIGKSTEVILNAGYGEDIGAILVGTVADYEQRNIGTDLEFKMMIAPGIDRW
MSKTFSKSYKEGMKASTILRDALSSFGLEIGELRLANDITYSKGKVVSGMLKNTIKNI
ATEAGSKLYIKNNIAFVRPPNAGTATGFLLSSKTGMVGSPEPIIIDDKKGYKVNMLLN
NKMNTDSLVQIESRIVTGNFRVVKGQHLGDFITEVEVLPI"
gene 450117..450413
/locus_tag="Amet_0434"
/db_xref="GeneID:5310477"
CDS 450117..450413
/locus_tag="Amet_0434"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318321.1"
/db_xref="GI:150388272"
/db_xref="GeneID:5310477"
/translation="MIDKVIQDILEERLADLHTFMLCRVVSITPQLTIRPIPKRKYKN
GRTEAYPIIINPLKLKNIPLEKDDVVAVAFSERALDGVGSRKHDLTDAVILGVI"
gene 450413..450775
/locus_tag="Amet_0435"
/db_xref="GeneID:5310478"
CDS 450413..450775
/locus_tag="Amet_0435"
/note="KEGG: efa:EF1478 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318322.1"
/db_xref="GI:150388273"
/db_xref="GeneID:5310478"
/translation="MKTFKIVDDDIVFDGQNNIVMVEGKDEEIQSINRVFTTRLNEFF
LEPEHGFDYSVLQTKQVDEEQIRLAVIEAANQDPRVQEVEELNIIVERKSRKVTIDFK
VKMQSGELLEGQEVLDIA"
gene 450768..451955
/locus_tag="Amet_0436"
/db_xref="GeneID:5310479"
CDS 450768..451955
/locus_tag="Amet_0436"
/note="KEGG: efa:EF1479 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318323.1"
/db_xref="GI:150388274"
/db_xref="GeneID:5310479"
/translation="MPSFGLGAKGFKRKKYNDIIESMNTRARNLFGEDVNVSPRSPLG
LFFRVISWSVAILWQLAEKVYFSGYVDTAEGNQLDYVGKYIGIERRLAQLSEGELTIT
GDASTIVPQGFVVETNDGIQFQTIEEATIDGAGEVTVPIQAIVAGIESNVPANTITEI
TNPTEGIDEVTNTAPTTNGRNPELDQEFKERYAISVSRGGASTLDSIRASLLELDGVR
ASLVVENNTMITDADDRPPKSIECYVLGGNSEDVGKSILDTKAAGIESFGEETVTVND
DSGNPHDIKFTYADVVDIYSNISITKNDKYPTNGDDLVRTELIKFIGGLDEDSNVYTG
LGMGQDVVYTRLIKVIYRIDGIDDVDLEIGVDGINYSVNNIVIAQAEVAEIDYTKVVV
TSA"
misc_feature 450795..451931
/locus_tag="Amet_0436"
/note="Uncharacterized homolog of phage Mu protein gp47
[Function unknown]; Region: XkdT; COG3299"
/db_xref="CDD:33108"
gene 451948..452577
/locus_tag="Amet_0437"
/db_xref="GeneID:5310480"
CDS 451948..452577
/locus_tag="Amet_0437"
/note="KEGG: lin:lin1709 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318324.1"
/db_xref="GI:150388275"
/db_xref="GeneID:5310480"
/translation="MLNLLQRLTDNYRKDSSINIGKLLNVVVGELEEVKDSLETTEKY
RDIDQAIGATLDKIGVNVQQFRGVAPDEVYRILLKSKIARNLSKGDINTIIRVLAITL
NTEQKNIYIQELYRTLDNEPAAIFVSVPAALLNSVGFSVNQFGRLVNRIVAAGVRANV
LFTGTFAFSSLENESEFDIDVGFADTDQTSGGMLGEYYDPVDDTNLPLD"
misc_feature <452080..452424
/locus_tag="Amet_0437"
/note="Protein of unknown function (DUF2612); Region:
DUF2612; pfam11041"
/db_xref="CDD:151488"
gene 452588..453157
/locus_tag="Amet_0438"
/db_xref="GeneID:5310481"
CDS 452588..453157
/locus_tag="Amet_0438"
/note="KEGG: lin:lin1708 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318325.1"
/db_xref="GI:150388276"
/db_xref="GeneID:5310481"
/translation="MFNEQLPEWLNEGTEPPAQKKSDGWLPTEKPPAGWFNWLFNKIY
KCIKEIRQKVMNLDEDLGSHVAESVSEVIDFQRDASILGTQHIATPRKPKGITLYANI
TGQATISIGFFGQIGAQKSFYSGSGSGIWRPYTGSAILISQGDTTNRLSGNIRNVEND
GFDILWSQVSGANTGTITITAMVVYHGEG"
gene 453159..453407
/locus_tag="Amet_0439"
/db_xref="GeneID:5310482"
CDS 453159..453407
/locus_tag="Amet_0439"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318326.1"
/db_xref="GI:150388277"
/db_xref="GeneID:5310482"
/translation="MKYCVIKNTTKVIDGSSNSSEIMLQNALNAGLTEEEIEILTEEE
YQARKDLEPIAPKEPTLEEKNRADIDYIAIMTGVDIDV"
gene 453400..453534
/locus_tag="Amet_0440"
/db_xref="GeneID:5310483"
CDS 453400..453534
/locus_tag="Amet_0440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318327.1"
/db_xref="GI:150388278"
/db_xref="GeneID:5310483"
/translation="MFNRVKEYYETGLWSIDRVFNVVGKAISEEEYQEITGFLYPAKS
"
misc_feature 453403..453510
/locus_tag="Amet_0440"
/note="Phage uncharacterized protein (Phage_XkdX); Region:
Phage_XkdX; cl09900"
/db_xref="CDD:209087"
gene 453984..454983
/locus_tag="Amet_0441"
/note="ribosomal slippage"
/db_xref="GeneID:5310484"
CDS join(453984..454529,454531..454983)
/locus_tag="Amet_0441"
/ribosomal_slippage
/note="PFAM: phage integrase domain protein SAM domain
protein;
KEGG: dsy:DSY2171 hypothetical protein"
/codon_start=1
/transl_table=11
/product="phage integrase domain/SAM domain-containing
protein"
/protein_id="YP_001318328.1"
/db_xref="GI:150388279"
/db_xref="InterPro:IPR004107"
/db_xref="GeneID:5310484"
/translation="MRKEEAVVRIVGRLDLEFNGMLDQQKARQIIQEVLYDYDVNPAQ
RSLVVQDDMNDKILLYLASKKIDGLAMRTLEGYSRNLNRFAYYMRKNVEDVTTMDIRM
YLASYAKTGVKNGTIGTETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTN
EEMEILRDGCKTYRQKALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERT
VYINAKAKVHIQKYLMARLDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSI
YPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTNVEHEYRKHMIQ"
misc_feature join(454146..454529,454531..454962)
/locus_tag="Amet_0441"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature join(454155..454529,454531..454971)
/locus_tag="Amet_0441"
/note="Site-specific recombinase XerD [DNA replication,
recombination, and repair]; Region: XerD; COG4974"
/db_xref="CDD:34580"
misc_feature order(454546..454551,454618..454620,454813..454821,
454924..454926)
/locus_tag="Amet_0441"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
misc_feature order(454546..454548,454618..454620,454819..454821,
454828..454830,454897..454899,454924..454926)
/locus_tag="Amet_0441"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature order(454546..454548,454819..454821,454828..454830,
454897..454899,454924..454926)
/locus_tag="Amet_0441"
/note="active site"
/db_xref="CDD:29495"
gene 455152..455811
/locus_tag="Amet_0442"
/db_xref="GeneID:5310485"
CDS 455152..455811
/locus_tag="Amet_0442"
/note="PFAM: Electron transfer flavoprotein,
alpha/beta-subunit-like;
KEGG: ctc:CTC02083 electron transfer flavoprotein
beta-subunit"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit
alpha/beta-like protein"
/protein_id="YP_001318329.1"
/db_xref="GI:150388280"
/db_xref="InterPro:IPR000049"
/db_xref="InterPro:IPR014730"
/db_xref="GeneID:5310485"
/translation="MSEKIEAEIIVLSMGPPSAENALREAIARGAHKGILLSDRKFGG
SDVKATALTLSAGINHIGDYDLIIAGMQTVDGDTGQVGAEVAEILGIPQISYVEELND
FDDESVTVTTNIWEGLYLKKIKFPALMTVTKEINDPRLPSFKNKMKARKAEITLWGQN
ELRDYLREDQIGLKGSATKVKKIEVPAAAVREGKLWRDNHTEAVDVLYDLFEVKKVLE
G"
misc_feature <455152..455622
/locus_tag="Amet_0442"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:30169"
misc_feature 455158..455565
/locus_tag="Amet_0442"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:201550"
misc_feature order(455191..455193,455356..455361,455365..455370,
455383..455394)
/locus_tag="Amet_0442"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:30169"
gene 455820..456809
/locus_tag="Amet_0443"
/db_xref="GeneID:5310486"
CDS 455820..456809
/locus_tag="Amet_0443"
/note="PFAM: Electron transfer flavoprotein,
alpha/beta-subunit-like; Electron transfer flavoprotein,
alpha subunit-like;
KEGG: tte:TTE0547 Electron transfer flavoprotein
alpha-subunit"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit
alpha-like protein"
/protein_id="YP_001318330.1"
/db_xref="GI:150388281"
/db_xref="InterPro:IPR014730"
/db_xref="InterPro:IPR014731"
/db_xref="GeneID:5310486"
/translation="MEYKGVLVYAEQRNQQIHKVTYELLDKGRQLADQLGVQVYCALL
GPADIDAQELIYRGADVVYYIEDNEAFNEPDELVYARNLQDLIVKIKPEICISGATSL
GRSVAPRVAAAIGAGLTADCTDLQIDEDRKLIQIRPAFSENILAHIKSECMPQMATVR
YKEFSEAKRDISRTGEIIKSSSLDYQNDAMVFIQELSQKKLDISEASVVVSAGTGLRS
PEDFKLLSELADLLNGVVAASRPLVEGGFISKDHQVGYSGNRVKPKIYIACGISGAPQ
HLAGMKDSETIIAINTDPSAPIFSIADHGIVGDLYEVVPLLINKIKSMRAVKV"
misc_feature 455829..456788
/locus_tag="Amet_0443"
/note="Electron transfer flavoprotein, alpha subunit
[Energy production and conversion]; Region: FixB; COG2025"
/db_xref="CDD:32208"
misc_feature 455832..456338
/locus_tag="Amet_0443"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:30170"
misc_feature 456423..456674
/locus_tag="Amet_0443"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene 456935..458086
/locus_tag="Amet_0444"
/db_xref="GeneID:5310487"
CDS 456935..458086
/locus_tag="Amet_0444"
/note="KEGG: pho:PH0137 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318331.1"
/db_xref="GI:150388282"
/db_xref="InterPro:IPR001734"
/db_xref="GeneID:5310487"
/translation="MNKKSGMPVFFALAFVWFTTHFGGGFASGAQVIQYFVKFGWFAI
FTPIISQLIIAIVLYFAWKFALEKKMFDYRDWANEFYKPIQGIMSNVFEIMYNLVLVT
ATAVAFATGGATIEGVFGTPYLLNTVVIAMALLLLTIFGAELVRKAASIIAVIIISGV
VLIYVPNVISSFGQITKNVADLRSGAIQNDTSFFSAMWSSLVYAGFQTTCIGAYIVHS
NILKDKSDAKKAALWGFIINSTVLMLSTLGILAFYNDGVLTESIPALFVVRNGVGSSW
MVPLISILIILGAVSTGVNLIYGISRRIVNYLGRSESPAVFKEKERTRNIGASALYVA
ITWSIAQFGLIPLIAKGYGTLGYISIFVIILPVIIKGIIGLKPKTKAKA"
misc_feature 456962..458017
/locus_tag="Amet_0444"
/note="Uncharacterized membrane protein [Function
unknown]; Region: COG3949"
/db_xref="CDD:33730"
gene 458180..459562
/locus_tag="Amet_0445"
/db_xref="GeneID:5310488"
CDS 458180..459562
/locus_tag="Amet_0445"
/note="PFAM: FAD linked oxidase domain protein;
KEGG: afu:AF0394 D-lactate dehydrogenase, cytochrome-type
(dld)"
/codon_start=1
/transl_table=11
/product="FAD linked oxidase domain-containing protein"
/protein_id="YP_001318332.1"
/db_xref="GI:150388283"
/db_xref="InterPro:IPR004113"
/db_xref="InterPro:IPR006094"
/db_xref="GeneID:5310488"
/translation="MKVEIIEKMKNIVGVDWVVTELSRMQSYLSDETEHLLKPKANED
CIVVKPSSAQEISGIMKYANQEKIPVVPRGGGTGLCGAAIPTHSSIVMSLERLNQYVE
LDDKNLMVTVDSGFTLAQLNEELNKQKNLFFPIHPGDEGAQIGGMVAENAGGVSAVKH
GIMRNHVKGLEVVLPTGEIVNFGGKLIKDNMGYDMLHMMIGSEGTLGIITKVILKLYA
KENHRGTLLISFDTGEDAAAVVPKILQRGITPLAMEYMERYVVEKAAEHLGLTWPAKK
GSVDLMFILEETTEDELYAKSEIIVEMCEKHHAVDSMIAETAKEQRNILEIRSNAYTA
FKEEIADALDMAVAPASVPDLVRDINTIAKKYNTISPVVGHIGDGNTHNFIMLVNGEK
PSYLDEMRQEMYEAAIKYGGTVTAEHGTGKTRKKHMNLQFSDREIEIMKGIKKAFDPN
GILNPGTIID"
misc_feature 458315..458728
/locus_tag="Amet_0445"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 458318..459547
/locus_tag="Amet_0445"
/note="glycolate oxidase, subunit GlcD; Region: glcD;
TIGR00387"
/db_xref="CDD:129482"
gene 460101..460343
/locus_tag="Amet_0446"
/db_xref="GeneID:5310489"
CDS 460101..460343
/locus_tag="Amet_0446"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318333.1"
/db_xref="GI:150388284"
/db_xref="GeneID:5310489"
/translation="MSQMKEFQPVLQMIVCRLAQMIAREMDLSDKAALDSLYLSKLYE
ELEREETKVWNLSVPTLLRMFIEEQETGIIKFPQEG"
gene 460346..460570
/locus_tag="Amet_0447"
/db_xref="GeneID:5310490"
CDS 460346..460570
/locus_tag="Amet_0447"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318334.1"
/db_xref="GI:150388285"
/db_xref="GeneID:5310490"
/translation="MDETLDFMVYCIESYKNAENLRGREAVELFNKYHVFDYIKASHG
TQDMACREYIIEDLNMYIDARRQVDTRRNL"
misc_feature 460358..460543
/locus_tag="Amet_0447"
/note="Protein of unknown function (DUF3791); Region:
DUF3791; pfam12668"
/db_xref="CDD:205005"
gene 460571..460687
/locus_tag="Amet_0448"
/db_xref="GeneID:5310491"
CDS 460571..460687
/locus_tag="Amet_0448"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318335.1"
/db_xref="GI:150388286"
/db_xref="GeneID:5310491"
/translation="MEDKVFNLLEKMYSDLSSKIDNMDEQIQEMKSIMTPFG"
gene 460892..462766
/locus_tag="Amet_0449"
/db_xref="GeneID:5310492"
CDS 460892..462766
/locus_tag="Amet_0449"
/note="PFAM: transposase, IS4 family protein;
KEGG: tte:TTE2604 transposase"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_001318336.1"
/db_xref="GI:150388287"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:5310492"
/translation="MEGLCMYISKSKRPNGKYFISIAKGIRDPETKKSKKIQIKGFGT
HDLDSKSGKKALVQAEAELKEMIRLDEASRGFENFEDFIVSMSKDKLSLKHKNIGYLP
YLEIFNQLKLQSFFSKMVKDSKLDYSFSDMMFYQVLGRLFNPSSKLEVATRKDDFLYD
FNFVNNDNIYSSLDVFSGFNKHKSKALQDGIQVINDMEILLDTVDSEAKKILETNINN
TSHELEELITSYDSNFEMNENKLFKHLNKHMEKIVPERNISLAFYDCTTYYFESFDED
GFRERGMSKDNKRNETQVVMGLLIDTNGIPISYRLFKGNKHELHTMEEVIDDILNNYT
IKEIIIVADRGLNSRANLEMIRGKGLNYIVGSKGSAVPKDLKEKKFNSSWNITSKAEA
KYKSGYITSKRKVSHNDETYDELIIKKYSDVYKEREMFKQDKMLERAKKNIKDFTINS
TTKSKSKYYKAVDNPKEKINIEIDEEKIKQEQENFGYFYIVTNKVEMNPADIMVAYKS
LYKIEESFRILKTNLKARPVYHFKERRIRSHFLICYLALVIQRVLEYKLEEKNVEIST
HEIINGLEGFVIDEIDYKVDKLYMISDKLFKSKINQDIFKIEKNVLLSNEISNIIKKM
"
misc_feature <461663..462571
/locus_tag="Amet_0449"
/note="Transposase [DNA replication, recombination, and
repair]; Region: COG5421"
/db_xref="CDD:34980"
gene 462812..462949
/locus_tag="Amet_0450"
/db_xref="GeneID:5310493"
CDS 462812..462949
/locus_tag="Amet_0450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318337.1"
/db_xref="GI:150388288"
/db_xref="GeneID:5310493"
/translation="MASALFIMNDVPKSGNTGNEINHDTFWLSKTRGVFHCLTMISVF
S"
gene 463002..463400
/locus_tag="Amet_0451"
/db_xref="GeneID:5310494"
CDS 463002..463400
/locus_tag="Amet_0451"
/note="KEGG: cth:Cthe_2665 Zn-finger containing protein"
/codon_start=1
/transl_table=11
/product="Zn-finger containing protein"
/protein_id="YP_001318338.1"
/db_xref="GI:150388289"
/db_xref="GeneID:5310494"
/translation="MMMNWLKKFMIGRSGGDQLSIYLLALSLVLTVIGQLAGTSIVVT
IGYIPLFVAISRVLSKDVQKRRMENYKFAIFISPIYAKLKKVESRIKGAKTHKHFKCA
NCKTMLRVPKGKGEILVTCPKCKTKCTRKT"
gene 463450..464220
/locus_tag="Amet_0452"
/db_xref="GeneID:5310495"
CDS 463450..464220
/locus_tag="Amet_0452"
/note="PFAM: heat shock protein DnaJ domain protein;
KEGG: gka:GK2503 chaperone protein (heat shock protein)"
/codon_start=1
/transl_table=11
/product="heat shock protein DnaJ domain-containing
protein"
/protein_id="YP_001318339.1"
/db_xref="GI:150388290"
/db_xref="InterPro:IPR001623"
/db_xref="InterPro:IPR003095"
/db_xref="GeneID:5310495"
/translation="MRVMKKIVGKVIYAIAKALSAILDSLIQLIETMVLLARSFSKGC
LALMSMGGCLFFLFFVFPIGSRILRNPTALLAILFILVFPILGALLVSYLKYLKYITT
AYLFNLGNYLMDGVNYQYKAFSEYKVAYRKAEEDRKRKEQNRHYEQQREWEERLRQWR
QQNAQREQGSYGGQGNYGHSYANPIVEFKKKYEKCCDVLGVSYDADKYQIKLAYRRKA
KQYHPDVNKAADATKMFQGISEAYEFLNDDNIQRYKSV"
misc_feature 464038..464190
/locus_tag="Amet_0452"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(464113..464121,464143..464145,464152..464157,
464164..464169)
/locus_tag="Amet_0452"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene 464758..465237
/locus_tag="Amet_0453"
/db_xref="GeneID:5310496"
CDS 464758..465237
/locus_tag="Amet_0453"
/note="PFAM: VanZ family protein;
KEGG: dsy:DSY3286 hypothetical protein"
/codon_start=1
/transl_table=11
/product="VanZ family protein"
/protein_id="YP_001318340.1"
/db_xref="GI:150388291"
/db_xref="InterPro:IPR006976"
/db_xref="GeneID:5310496"
/translation="MFKNKKIIVISWIAVLLWMGLIFYLSAQPATQSREVSEGVTEIF
MQTVERVAPDVAAELDIRMLNYLIRKNAHFFAYLTLGVLVLNGMRRSGVSGIRGIVIA
FFICVLYAISDEVHQLYVPGRSGELRDVLIDSAGAMVGIGLYLGLGKIKKKVMISRV"
misc_feature 464782..465174
/locus_tag="Amet_0453"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5652"
/db_xref="CDD:35211"
gene complement(465310..466017)
/locus_tag="Amet_0454"
/db_xref="GeneID:5310497"
CDS complement(465310..466017)
/locus_tag="Amet_0454"
/note="PFAM: glutamine amidotransferase class-I;
KEGG: pca:Pcar_2563 GMP synthase - glutamine
amidotransferase domain"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase"
/protein_id="YP_001318341.1"
/db_xref="GI:150388292"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:5310497"
/translation="MKKLLIIKTGTTFPSILKAHGDFEDFIMNQIEISPKDVHVSSVY
KNESLPDLNQVSAIMITGSHSMVTDYENWSVHLSQWLTQLLYQPIPVLGICYGHQLLA
QTFGGKADYNPKGIEIGTASIALTEAGEKDSLLGVLPKTFLGHVVHSQSATMLPNHGQ
VLAQNEMDHHHSFFINKNIWGVQFHPEFNVDIMHSYIHQQEGFLTKKGYNLEKVYASV
KEHGYGKLLLQRFMELT"
misc_feature complement(465457..466011)
/locus_tag="Amet_0454"
/note="Subgroup of proteins having the Type 1 glutamine
amidotransferase (GATase1) domain; Region: GATase1_1;
cd01741"
/db_xref="CDD:153212"
misc_feature complement(465427..465972)
/locus_tag="Amet_0454"
/note="GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism]; Region: GuaA;
COG0518"
/db_xref="CDD:30864"
misc_feature complement(order(465457..465459,465463..465465,
465733..465735))
/locus_tag="Amet_0454"
/note="catalytic triad [active]"
/db_xref="CDD:153212"
gene 466370..467371
/locus_tag="Amet_0455"
/db_xref="GeneID:5310498"
CDS 466370..467371
/locus_tag="Amet_0455"
/EC_number="5.1.1.1"
/note="PFAM: regulatory protein, LacI; periplasmic binding
protein/LacI transcriptional regulator;
KEGG: oih:OB3476 transcriptional repressor"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001318342.1"
/db_xref="GI:150388293"
/db_xref="InterPro:IPR000843"
/db_xref="InterPro:IPR001761"
/db_xref="GeneID:5310498"
/translation="MTTIQKVAKEAGVSVATVSRVLNKSDRVAPKTKSIVEETIKRLK
YQPNMLGRNLRRSESRMILALLPSISNPFYTMIIKGIEDVARENEYNVLLCQTNSELE
RELVYINLLKQRLADGLISLDPTININVLRGVSQDYPIVQSCEYSEELNLPYVTIDNF
QAGYQAVKHLISIGKKKIALINSDNKFIYARLRQKGYLKALEEAGLGINEDFIINGEN
DFESGQKSMQQLLARKDRPDAVFLVSDVLAIGALKTIRDMKLSVPEDIAVVGFDNIEF
AIRMNPALTTIAQPMYEIGRESCRLLINRIVNKDVEIEKIIMDFELIIRESTMKQVE"
misc_feature 466373..467359
/locus_tag="Amet_0455"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 466388..466537
/locus_tag="Amet_0455"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(466406..466420,466424..466429,466436..466438,
466451..466456,466463..466465,466502..466504,
466511..466513,466520..466525,466529..466534)
/locus_tag="Amet_0455"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 466502..466531
/locus_tag="Amet_0455"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 466550..467350
/locus_tag="Amet_0455"
/note="Ligand-binding domain of an uncharacterized
transcription regulator from Actinobacillus succinogenes
and its close homologs from other bacteria; Region:
PBP1_LacI_like_6; cd06284"
/db_xref="CDD:107279"
misc_feature order(466550..466552,466613..466615,466640..466642,
466649..466651,466655..466657,466712..466714,
467027..467029,467126..467128)
/locus_tag="Amet_0455"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107279"
misc_feature order(466580..466582,466946..466948,467183..467185,
467234..467236)
/locus_tag="Amet_0455"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107279"
gene 467431..468453
/locus_tag="Amet_0456"
/db_xref="GeneID:5310499"
CDS 467431..468453
/locus_tag="Amet_0456"
/note="KEGG: bms:BR0544 ribose ABC transporter,
periplasmic D-ribose-binding protein"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter periplasmic protein-like
protein"
/protein_id="YP_001318343.1"
/db_xref="GI:150388294"
/db_xref="GeneID:5310499"
/translation="MKKIRIMLLMLILVVLIVGCGQQDTGTGVEDGKVLGVVMPNATH
GFLGESIQHAEAATKLYAEEYGFEYQFLTSAESSEQNNQLDTLINQNVDAIVLWPHNG
DEVRSGAQNVMDAGIPLIVYDRLIDGFEPTMEVMGDNFTIGEETGEYLNQYFANELAA
GEVHILEFKGDNSTVPQQRSDGLKRTAHENIVIVQEFSTGWQRATAQEQMETFLTASS
VEEIEAIKAIFTHDDEVVLGVLDAIMDYNGPAQLDIRLATGVGGRRENLDTFKPIKEG
YAIDQVTYLFSPTMVRDAVEYGAKILNGESFSGLYLIDTMKIDESNEVEFRGSDIYKI
RYESDL"
misc_feature 467530..468375
/locus_tag="Amet_0456"
/note="Periplasmic sugar-binding domain of active
transport systems that are members of the type I
periplasmic binding protein (PBP1) superfamily; Region:
PBP1_ABC_sugar_binding_like; cd01536"
/db_xref="CDD:107249"
misc_feature 467533..468345
/locus_tag="Amet_0456"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature order(467566..467568,467797..467799,467965..467967,
468211..468213,468283..468285)
/locus_tag="Amet_0456"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107249"
gene 468517..470028
/locus_tag="Amet_0457"
/db_xref="GeneID:5310500"
CDS 468517..470028
/locus_tag="Amet_0457"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: oih:OB2574 ribose ABC transporter ATP-binding
protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001318344.1"
/db_xref="GI:150388295"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:5310500"
/translation="MFLQMKNISKNFGPVKALQDVSLEVGPGEIHGLMGENGAGKSTL
MNILAGAMQPTSGEIYFNDNKIHQMTTIKATEIGIRFIHQELNVINDLKVYENLFLRE
EIVKNFFLLDHKKMIEKSAEIFKGMQIDIDPNQMVSELDTSRKQLVEIAKALLFQSKL
IIMDEPTTALTNNEIENLFSIMRTLKKEGVSIIYISHKMPELFSICDNFTVLRDGKFI
SSGAFKQIDEEEATKMLVGRSISNMAFQRNDVMDETVMAVENLSCEPFFKDINFSLNK
GEVIAITGLHGDGRGELAEALFGARKVTSGKVIVNGKALTLSNIRKVMKAGIGMVPRN
RKERSIILDMSIKDNLSMAYFTTHHKKVRVNKKEEMERFERNRKLTDIKASDPNNLIT
SLSGGNQQKVIIARWLELGSDIYILDNPTQGIDVGAKYEIYRLINELTKHKKSVIIFS
AEFSEIQKVADRCLVMYKGRINAELKQNEMTEVKVMYYATGSNMEGVKCASKI"
misc_feature 468520..469992
/locus_tag="Amet_0457"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 468523..469176
/locus_tag="Amet_0457"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 468619..468642
/locus_tag="Amet_0457"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(468628..468633,468637..468645,468898..468900,
469006..469011,469105..469107)
/locus_tag="Amet_0457"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature order(468757..468765,468898..468900)
/locus_tag="Amet_0457"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(468901..468927,468961..468963)
/locus_tag="Amet_0457"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 468994..469011
/locus_tag="Amet_0457"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 469018..469029
/locus_tag="Amet_0457"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 469093..469113
/locus_tag="Amet_0457"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 469273..469929
/locus_tag="Amet_0457"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 470010..470987
/locus_tag="Amet_0458"
/db_xref="GeneID:5310501"
CDS 470010..470987
/locus_tag="Amet_0458"
/EC_number="3.6.3.17"
/note="PFAM: inner-membrane translocator;
KEGG: cpf:CPF_1881 ribose ABC transporter, permease
protein"
/codon_start=1
/transl_table=11
/product="monosaccharide-transporting ATPase"
/protein_id="YP_001318345.1"
/db_xref="GI:150388296"
/db_xref="InterPro:IPR001851"
/db_xref="GeneID:5310501"
/translation="MRIENIIKSTNKKDLKKIFREYSYVFSFIILVMIAIAVNNRFLT
YNNLSTIVMQSSIKGIIALGMTLVIISGEIDLSVGSTCAFVAGLGVVVLNSTENIFIM
LVFCMAFGTLLGTVNGLLITKGKIASFIVTLATMSAYRSIVVQLGQGGPFNVSSEMYP
SFRMIASGKILGVPNLAIIFIFISVAMAFLMRETKFGKYVYAVGSNSNAAKLTGVNVE
RIKMLSFSITGLLTGISAFLLSARLTSITAANVAMAFELDAIAAVAIGGTAMSGGRGR
IFGTFLGIIMLQMIEGILIAAKIPPFLNGLVKGVIIVVAVLLQRKKSGE"
misc_feature 470172..470966
/locus_tag="Amet_0458"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 470631..470687
/locus_tag="Amet_0458"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 471009..471944
/locus_tag="Amet_0459"
/db_xref="GeneID:5310502"
CDS 471009..471944
/locus_tag="Amet_0459"
/note="PFAM: Xylose isomerase domain protein TIM barrel;
KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase"
/codon_start=1
/transl_table=11
/product="xylose isomerase domain-containing protein"
/protein_id="YP_001318346.1"
/db_xref="GI:150388297"
/db_xref="InterPro:IPR012307"
/db_xref="GeneID:5310502"
/translation="MKLGFLTGALGDIPLKEKIEWAHQSKFDCIEISCWPKMNSRDYS
ASDIDVDHFTQEDADELNEFLKEKNMFISSLAYYDNHLHEDLNLRKSYHDHLKKVINA
ASMLGVELVGTFVGRHQGLSIVENFQEFKVVFSDILDFAQEKNVKIIIENCPMPVWHE
DGLAGTISYSPELWDEMFKIFPHKHFGLNFDPSHLVWLQIDYIKALKDYKERILHIHA
KDTKMIRENLNRYGIYGKQLHKMDPFDLGWVEAKLPGNGDVDWNNFFKTLKEMDYKGV
VSIEHEDPSYEGNSELVKEGLLIGKENLERAISRQ"
misc_feature 471009..471926
/locus_tag="Amet_0459"
/note="Sugar phosphate isomerases/epimerases [Carbohydrate
transport and metabolism]; Region: IolE; COG1082"
/db_xref="CDD:31279"
misc_feature 471051..471893
/locus_tag="Amet_0459"
/note="AP endonuclease family 2; These endonucleases play
a role in DNA repair. Cleave phosphodiester bonds at
apurinic or apyrimidinic sites; the alignment also
contains hexulose-6-phosphate isomerases, enzymes that
catalyze the epimerization of...; Region: AP2Ec; cl12060"
/db_xref="CDD:187176"
misc_feature order(471105..471107,471237..471239,471864..471866)
/locus_tag="Amet_0459"
/note="AP (apurinic/apyrimidinic) site pocket; other site"
/db_xref="CDD:28903"
misc_feature order(471123..471137,471237..471242,471246..471248,
471255..471257)
/locus_tag="Amet_0459"
/note="DNA interaction; other site"
/db_xref="CDD:28903"
misc_feature order(471231..471233,471348..471350,471459..471461,
471579..471581,471588..471590,471657..471659,
471717..471719,471723..471725)
/locus_tag="Amet_0459"
/note="Metal-binding active site; metal-binding site"
/db_xref="CDD:28903"
gene 471969..473018
/locus_tag="Amet_0460"
/db_xref="GeneID:5310503"
CDS 471969..473018
/locus_tag="Amet_0460"
/note="PFAM: oxidoreductase domain protein;
Oxidoreductase, C-terminal domain;
KEGG: bha:BH1248 NADH-dependent dyhydrogenase"
/codon_start=1
/transl_table=11
/product="oxidoreductase domain-containing protein"
/protein_id="YP_001318347.1"
/db_xref="GI:150388298"
/db_xref="InterPro:IPR000683"
/db_xref="InterPro:IPR004104"
/db_xref="GeneID:5310503"
/translation="MKMKIRVGIVGCGSIAKFRHAPEYHENPNVEIEGFYDHNVERAE
ALAKIYGGKVYSDYLDLIQDKTIDAISDCSTNETHHIVTSAALKNNKSVLCEKPMTTT
VENANMILETKKNSKGILMIDHNQRLTSAHIRAKAILKSGELGKVITFTTTFGHKGPE
YWGADKSKNTWFFNKNRSVLGVTGDLGIHKVDLLRFLLEDEIVEVSAMAGSLNKRNAN
NDLIDVPDNMVCLLRTEKGNIGTAAFSWSYYGDEDNSTKIYCEKGTMMIYDNPDYQIV
INKMGKEKICYELEQIQSNDNQTSTGVIDEFIDAIISNREPVVTGEDGIMALKIVEAA
MLAAETNQTIKIDLR"
misc_feature 471975..473012
/locus_tag="Amet_0460"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature 471981..472340
/locus_tag="Amet_0460"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature 472374..472727
/locus_tag="Amet_0460"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:202453"
gene complement(473171..473713)
/locus_tag="Amet_0461"
/db_xref="GeneID:5310504"
CDS complement(473171..473713)
/locus_tag="Amet_0461"
/note="KEGG: tde:TDE2712 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318348.1"
/db_xref="GI:150388299"
/db_xref="GeneID:5310504"
/translation="MIKRIKTKLDVIEGMLYYWQATSEKDKVGEKYIITMAEQEEMQY
IYDEEFNQESVRKVLSAISNRELLNSESKKARKFWNNNMWMLEDLEYTNLMIAPLKTL
NLDALIDKLNNKAVNSQYEEPEVIFLPGHHDEYTIKDNKLIINFFRVKADLYEENKVM
IGDQLLVDYIEEKLSELVSQ"
gene 473913..474896
/locus_tag="Amet_0462"
/db_xref="GeneID:5310505"
CDS 473913..474896
/locus_tag="Amet_0462"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: chy:CHY_0890 hydrolase, alpha/beta fold family"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase fold protein"
/protein_id="YP_001318349.1"
/db_xref="GI:150388300"
/db_xref="InterPro:IPR000073"
/db_xref="GeneID:5310505"
/translation="MDNLVDIFTETIKMSDGQSIHLKRWTPRVSSLKPVVIQIAHGMA
EHIQRYDEFAKALVKEGWIVHGHDHRGHGSTAKESGELGYFADEEGWERVIKDLNEVT
RKIKAEYPDSQVILFGHSMGSFLARRYVQLFPQEVDALILSGTGCSKGLLGRIGIQVA
ALSEVVYGKKKQNKLLDKLAFGGFNVRFEPTETSFDWLSRDPQMIQDYIGDPLCGFIF
TTEAFYDMLKGIEELHKQKNIEKTPKNLPLYIFSGECDPVGDYGKGVKVVYETYVGLG
IEEVHYKLYPGGRHEMLNEINREEVYRDIIVWIKDALAEKNHSLSNVPKIK"
misc_feature 473940..474860
/locus_tag="Amet_0462"
/note="Lysophospholipase [Lipid metabolism]; Region: PldB;
COG2267"
/db_xref="CDD:32448"
misc_feature 473961..474221
/locus_tag="Amet_0462"
/note="Putative lysophospholipase; Region: Hydrolase_4;
pfam12146"
/db_xref="CDD:204836"
gene 474940..475833
/locus_tag="Amet_0463"
/db_xref="GeneID:5310506"
CDS 474940..475833
/locus_tag="Amet_0463"
/note="PFAM: metal-dependent protein hydrolase;
KEGG: cps:CPS_2163 hypothetical protein"
/codon_start=1
/transl_table=11
/product="metal-dependent protein hydrolase"
/protein_id="YP_001318350.1"
/db_xref="GI:150388301"
/db_xref="InterPro:IPR003226"
/db_xref="GeneID:5310506"
/translation="MEKPYKRVGTHHGRFHADEVMATAILMELFEIEVTRTRDPKILS
KLDIVYDVGGGVFDHHGIEKVYRDDGIPFAACGLIWNEFGRKVISMKESSLVESEIEL
VFESVDRALMKGIDAIDNGVRIGEQIVDLMDISSIVSMFNPPWDLEKSEKECFDRAVA
VASSVLNNTIDHKLAVLRTRIPVSKAYKRRENPKILVLEKSCPWQKVLSEIDERNEVL
FVVYPDKDNYAIQTVRGEDGEDKKYLPKSWVGKEEKELAEVTGVADAVFCHTGRFIAV
ARRLESIVKMAELAINEEDKP"
misc_feature 474955..475815
/locus_tag="Amet_0463"
/note="Uncharacterized protein family (UPF0160); Region:
UPF0160; pfam03690"
/db_xref="CDD:190713"
gene complement(475914..476963)
/locus_tag="Amet_0464"
/db_xref="GeneID:5310507"
CDS complement(475914..476963)
/locus_tag="Amet_0464"
/EC_number="2.4.2.21"
/note="PFAM: Nicotinate-nucleotide-dimethylbenzimidazole
phosphoribosyltransferase;
KEGG: cth:Cthe_1297
nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase"
/protein_id="YP_001318351.1"
/db_xref="GI:150388302"
/db_xref="InterPro:IPR003200"
/db_xref="InterPro:IPR008281"
/db_xref="GeneID:5310507"
/translation="MNKLKETIRMIEELDQETMQKARERVDNLIKPPKSLGRLEDLAV
QLAGITKTIHPTVANKAIIVMAADHGVYEEGIAGFPQEITVVQTLNFVKGVTGVCALG
KVSGTKIIPVDIGVKEDLDPNAGVLIRKIKYGTDNMAKGPAMSREEAIRALEVGIEVA
NEEIKNGVTLLGTGEMGIGNTTASTAILSVLGNFDPKEITGRGAGLSPEGIQRKAAVI
KRAIEVNQPDATDGIDVVAKVGGLEIAGMAGVMLAAAANRIPVVVDGYIATAAALIAV
SLEPKTKQYLIPSHASAEIGSIKATELLGIKPMIHMDLCLGEGSGAALVFPIVEAACH
MINCMPTFEEAGITI"
misc_feature complement(475923..476945)
/locus_tag="Amet_0464"
/note="Phosphoribosyltransferase; Region: DBI_PRT;
pfam02277"
/db_xref="CDD:190270"
misc_feature complement(475929..476873)
/locus_tag="Amet_0464"
/note="Nicotinate-nucleotide-dimethylbenzimidazole
phosphoribosyltransferase (DMB-PRT), also called CobT;
Region: DMB-PRT_CobT; cd02439"
/db_xref="CDD:143332"
misc_feature complement(order(475929..475931,475944..475949,
475959..475964,475971..475973,475983..475985,
475992..475994,476016..476018,476022..476039,
476043..476045,476085..476087,476655..476657,
476661..476666,476673..476681,476703..476708,
476715..476717,476730..476732,476847..476873))
/locus_tag="Amet_0464"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143332"
misc_feature complement(order(475941..475943,476010..476018,
476088..476090,476163..476171,476421..476441,
476703..476705,476715..476717,476733..476735,
476865..476870))
/locus_tag="Amet_0464"
/note="active site pocket [active]"
/db_xref="CDD:143332"
misc_feature complement(476010..476012)
/locus_tag="Amet_0464"
/note="putative cataytic base [active]"
/db_xref="CDD:143332"
misc_binding complement(477062..477242)
/note="Cobalamin riboswitch as predicted by Rfam
(RF00174), score 116.97"
/bound_moiety="adenosylcobalamin"
gene 477801..479114
/locus_tag="Amet_0465"
/db_xref="GeneID:5310508"
CDS 477801..479114
/locus_tag="Amet_0465"
/note="TIGRFAM: uracil-xanthine permease;
PFAM: Xanthine/uracil/vitamin C permease;
KEGG: hma:pNG7256 xanthine permease"
/codon_start=1
/transl_table=11
/product="uracil-xanthine permease"
/protein_id="YP_001318352.1"
/db_xref="GI:150388303"
/db_xref="InterPro:IPR006042"
/db_xref="InterPro:IPR006043"
/db_xref="GeneID:5310508"
/translation="MEKKSSVYELEGVPPLKEAIPLGMQHVLAMFAGNITPIMVIAGA
LSISVQDRTFLIQASMFIAGVVTLLQLYFGAKLPIVMGTSSGFIGTSLAIGAKYGLAG
ILGASLIGGVFEGVLGFFIKPLRKFFPPLVTGTVVLTIGLSLIPIGVRSFGGGSGAAD
FGSLSNLFLGTVVLVTILMLKQFTKGFSSASAILIGIIVGYLIAIPMGKVDFGTVQGA
GWFSFPTPLKFGLAFHWDAIVAMGVMYIVTAVETVGDISGITMGGLKRDATDKELSSG
VIMDGIGSSLAALFGVLPNTSFSQNVGIVALTGVVNRFAIATGAIFLIIAGLFPKVGA
LISIMPSSVLGGAAIIMFSMITISGINLVTQEPLDGRNGIILATALALGLGMSSVPEI
LVNMPEGIRLLFGGSGIVIAATVALVLNIVFPKTSTPEKAKESAV"
misc_feature 477867..479072
/locus_tag="Amet_0465"
/note="xanthine permease; Region: pbuX; TIGR03173"
/db_xref="CDD:188293"
misc_feature <478299..478871
/locus_tag="Amet_0465"
/note="Sulfate transporter family; Region: Sulfate_transp;
cl15842"
/db_xref="CDD:210242"
gene 479340..479756
/locus_tag="Amet_0466"
/db_xref="GeneID:5310509"
CDS 479340..479756
/locus_tag="Amet_0466"
/note="KEGG: swo:Swol_1757 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318353.1"
/db_xref="GI:150388304"
/db_xref="GeneID:5310509"
/translation="MAFVANDYNQISLNDSAFSLTQREKKFLAKSWAKAFAQKVFPAI
DEEEFSVLYSDKAFRPNTPVNVIIGAMILKEMHGVTDEEILESLIFDIRFQYGLHTTS
SMEQPLSDRSLSRFRERCTTYEAMTGIVLFYKDSCI"
misc_feature 479514..479726
/locus_tag="Amet_0466"
/note="Transposase domain (DUF772); Region: DUF772;
pfam05598"
/db_xref="CDD:203284"
gene 480588..481895
/locus_tag="Amet_0467"
/db_xref="GeneID:5310510"
CDS 480588..481895
/locus_tag="Amet_0467"
/note="PFAM: histidine kinase, HAMP region domain protein;
chemotaxis sensory transducer;
KEGG: bld:BLi03297 close homolog to McpA methyl-accepting
chemotaxis protein; RBL01413"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_001318354.1"
/db_xref="GI:150388305"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:5310510"
/translation="MSNGNVSKIKSIRKAGMGLQFKLTVFIVLAFTFVTTGNSIFLQY
ASQVMDNLLLMNVMSTLVSIFLAGCVAFGIIKFFIKKPLDSLTDLGKRLANNNLTEKV
QVKSKDEFGQLSDMFNHTIENLRVLIGQIQNATETINLSTQQLADSSSDMNEFSEVIS
NSTQQLANGSNEQSQSITDIGHAVDELAKNIQDIDVKLKKLDESTDSVMEKAATGQVT
IDENMNVMQEIADFTDGLGGTIRTLKNDSDEISQILQMINNIAEQTNLLALNASIEAA
RAGDAGRGFAVVAEEIRKLAENSKGETENIEALIKNTQQNTSKAVSLMNDADKQIEKG
LETSQRTKDAFSSIIQGTEESILQVKEINSLSTDVASISQEISATVQEISAVIEESSA
VTEEVASGTEQQGTEFKKMMGSIQKLSTIGEELTSLIGQFKTK"
misc_feature 480822..480962
/locus_tag="Amet_0467"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(480822..480827,480834..480839,480843..480848,
480855..480860,480864..480866,480912..480917,
480921..480926,480933..480938,480942..480947,
480954..480959)
/locus_tag="Amet_0467"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 481062..481886
/locus_tag="Amet_0467"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 481140..481736
/locus_tag="Amet_0467"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(481164..481169,481176..481181,481188..481190,
481197..481202,481206..481211,481218..481220,
481227..481232,481239..481241,481248..481253,
481260..481265,481272..481274,481281..481286,
481290..481295,481305..481307,481311..481316,
481323..481325,481332..481337,481344..481349,
481356..481358,481365..481367,481374..481379,
481386..481388,481398..481400,481407..481409,
481428..481430,481440..481442,481449..481451,
481458..481463,481470..481472,481479..481484,
481491..481496,481500..481505,481512..481517,
481554..481559,481566..481568,481575..481580,
481587..481589,481596..481601,481605..481610,
481617..481622,481629..481631,481638..481643,
481650..481652,481659..481664,481668..481673,
481680..481685,481689..481694,481701..481703,
481710..481715,481722..481724,481731..481736)
/locus_tag="Amet_0467"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 481374..481475
/locus_tag="Amet_0467"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 481907..482116
/locus_tag="Amet_0468"
/db_xref="GeneID:5310511"
CDS 481907..482116
/locus_tag="Amet_0468"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318355.1"
/db_xref="GI:150388306"
/db_xref="GeneID:5310511"
/translation="MMFIKSKVIANDKQRLPNQNLLANKDQSKEKDEITRGKGSGEEV
KGQIRLWNSSYAKHTFRQRKFLEWE"
gene complement(482182..483113)
/locus_tag="Amet_0469"
/pseudo
/db_xref="GeneID:5310512"
gene 483409..484200
/locus_tag="Amet_0470"
/db_xref="GeneID:5310513"
CDS 483409..484200
/locus_tag="Amet_0470"
/note="PFAM: molybdopterin dehydrogenase, FAD-binding; CO
dehydrogenase flavoprotein domain protein;
KEGG: dps:DP3068 similar to 4-hydroxybenzoyl-CoA reductase
(HcrB)"
/codon_start=1
/transl_table=11
/product="FAD-binding molybdopterin dehydrogenase"
/protein_id="YP_001318356.1"
/db_xref="GI:150388307"
/db_xref="InterPro:IPR002346"
/db_xref="InterPro:IPR005107"
/db_xref="GeneID:5310513"
/translation="MFQIKNYAIPNTIEEAYQLLNEKRANTLLGGCGFLKMGKKTIPT
AIDLSHLGLDKIKEDENAIEIGAMTSFRAVEVSSILNDHFDGILPRAVKEILGVQFRN
VVTVGATVYSRYGFSDFITALLALDAYVILYKGGKIPLAAFLAQGCQKDILIKIVILK
KNTRAAFHAMRNSQGDYAILNVAVSKENNEFKIAVGARPQRAMIAREASKLLGEGQLS
EAMIEEVSILAAKELTFGSNMRGTKEYRQILCKALVKRGIKEVLS"
misc_feature 483424..484188
/locus_tag="Amet_0470"
/note="Aerobic-type carbon monoxide dehydrogenase, middle
subunit CoxM/CutM homologs [Energy production and
conversion]; Region: CoxM; COG1319"
/db_xref="CDD:31510"
misc_feature 483901..484191
/locus_tag="Amet_0470"
/note="CO dehydrogenase flavoprotein C-terminal domain;
Region: CO_deh_flav_C; pfam03450"
/db_xref="CDD:202637"
gene 484197..484649
/locus_tag="Amet_0471"
/db_xref="GeneID:5310514"
CDS 484197..484649
/locus_tag="Amet_0471"
/note="PFAM: ferredoxin; [2Fe-2S]-binding domain protein;
KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC)"
/codon_start=1
/transl_table=11
/product="2Fe-2S iron-sulfur cluster binding
domain-containing protein"
/protein_id="YP_001318357.1"
/db_xref="GI:150388308"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR002888"
/db_xref="GeneID:5310514"
/translation="MMKINVTVNDEQLEMEVGYDEFLVEALRRYGFNSVKRGCDTGCC
GLCTIWINDQPTLSCSSLAVRANNQKITTIEGLQEEATDFAKVLVKEGAEQCGFCSPG
FIMTILAMKRELKNPTEEEIIHYLTGNLCRCTGYLGQLRAVKKYMGVV"
misc_feature 484197..484631
/locus_tag="Amet_0471"
/note="Aerobic-type carbon monoxide dehydrogenase, small
subunit CoxS/CutS homologs [Energy production and
conversion]; Region: CoxS; COG2080"
/db_xref="CDD:32263"
misc_feature <484305..484430
/locus_tag="Amet_0471"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cl00159"
/db_xref="CDD:206870"
misc_feature 484413..484631
/locus_tag="Amet_0471"
/note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799"
/db_xref="CDD:201981"
gene 484652..486961
/locus_tag="Amet_0472"
/db_xref="GeneID:5310515"
CDS 484652..486961
/locus_tag="Amet_0472"
/note="PFAM: aldehyde oxidase and xanthine dehydrogenase,
a/b hammerhead; aldehyde oxidase and xanthine
dehydrogenase, molybdopterin binding;
KEGG: dps:DP3066 similar to 4-Hydroxybenzoyl-CoA reductase
(HcrA)"
/codon_start=1
/transl_table=11
/product="molybdopterin binding aldehyde oxidase and
xanthine dehydrogenase"
/protein_id="YP_001318358.1"
/db_xref="GI:150388309"
/db_xref="InterPro:IPR000674"
/db_xref="InterPro:IPR008274"
/db_xref="GeneID:5310515"
/translation="MKIVNQSITKIDGMDIATGKPVYTDDLVNVKALVVKILRSPHAF
AKIKSIDVEKAKKRSGVACVLTHQDVPNQRFTMAGQSYPEPSPYDRLVLDEYVRYVGD
EVAIIAAVDERTAIEAMKMIKVEYEILEPVLNFEEAIGHPSVIHPEENLEVNFDIGMK
REKNIAATVLIENGDMEEALKNSPVIVEETYYTQAQAHGMMETQRAFTYLDVSGRLTI
VTSTQIPFHVRRIVANALEIPKSKVRVIKPKIGGGFGGKQNASVEVFPAIVTLKTGKP
AKIIYDRKENLGCTSSRHAMKIKVKLGADHEGNIKAVDMEALSDTGAYGEHASTVLGV
AGYKTLPLYNTAKAVRYSGEAVYTNKMPAGALRGYGVTQGIFALESAINQLADQLNMD
PAEVREKNLIKQGETNPILSGSKAGEPGKLDSCTLDRCIEKGKELIGWKEKYPSQRVS
DTKVRAVGMAITMQGSGIAGIDTAAVTIKLNDDGLYSLLIGATEMGMGSDTILTQMAA
ETLEIGMDKFIVHGIDTDLSPYDTGSYASSTTYVTGNAVIKAAEDLKGKMMRQASGML
GVPLKGLRFKGDTIGVINHPDKQVSLNEIAADVGAGEGKQEQLMGSGTFGGDKSPPPF
IAGFAEVEVDLETGKIVLIDYVAVIDCGTVINPNLARIQAEGGLVQGIGMAMYEDVLY
DKAGRMMTNSFMQYKIPCRKDINKITVAFEPSYEPTGPFGAKSIGEVVINTPPPAIAH
AVFNATGVYVRNLPITPEKVVKGMMESSK"
misc_feature 484655..486937
/locus_tag="Amet_0472"
/note="xanthine dehydrogenase subunit XdhA; Provisional;
Region: PRK09970"
/db_xref="CDD:182174"
misc_feature 484703..485041
/locus_tag="Amet_0472"
/note="Aldehyde oxidase and xanthine dehydrogenase, a/b
hammerhead domain; Region: Ald_Xan_dh_C; smart01008"
/db_xref="CDD:198076"
misc_feature 485141..486763
/locus_tag="Amet_0472"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
gene complement(487055..487591)
/locus_tag="Amet_0473"
/db_xref="GeneID:5310516"
CDS complement(487055..487591)
/locus_tag="Amet_0473"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318359.1"
/db_xref="GI:150388310"
/db_xref="GeneID:5310516"
/translation="MKYDVKDIAIIALTAALTVVIGYLFYVVGSFFPIPGYKFIIFAP
FLGFMIFIPTRKIQKVGVISAVSIVFAALMTPVSVFMGIAIFMTGITTDLLTLLLLHN
YNQMWKITASVGLYPMFSVLWSFLVSYYFTGNAMYQLVGGWISILLLCLVIYILGVVG
AYLSNKVIFSRISKSIIS"
gene 488031..488363
/locus_tag="Amet_0474"
/db_xref="GeneID:5310517"
CDS 488031..488363
/locus_tag="Amet_0474"
/note="KEGG: bca:BCE_2880 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318360.1"
/db_xref="GI:150388311"
/db_xref="GeneID:5310517"
/translation="MYDKDTVYIVGHGRTSSDNAITHHYKIFFISFVVKIETTEIIDL
ECSATVDITKKFVHSLFIGKKLGEFDEEIEEEIKRRYFGSSQRAIIVAYKDGVKKFNE
CKQRYYDQ"
misc_feature 488049..488336
/locus_tag="Amet_0474"
/note="Domain of unknown function (DUF3870); Region:
DUF3870; pfam12986"
/db_xref="CDD:205176"
gene 488686..489777
/locus_tag="Amet_0475"
/db_xref="GeneID:5310518"
CDS 488686..489777
/locus_tag="Amet_0475"
/note="PFAM: Mandelate racemase/muconate lactonizing
protein;
KEGG: cac:CAC0192 similar to chloromuconate
cycloisomerase"
/codon_start=1
/transl_table=11
/product="mandelate racemase/muconate lactonizing protein"
/protein_id="YP_001318361.1"
/db_xref="GI:150388312"
/db_xref="InterPro:IPR001354"
/db_xref="InterPro:IPR013341"
/db_xref="InterPro:IPR013342"
/db_xref="GeneID:5310518"
/translation="MKIIDIKVGRILIPLKKPFKTALRTVEHVNNIIVKIETDTGHVG
YGEAPPTGVITGDTRGSIAGAIKEHIKNNILGMDIANFEEIMIRLEKSLVKNTSAKAA
VDIALYDLFGQLYNAPVYKLLGGYRKEMTTDITVSVNDPEEMVKDSMDAVSRGFKTLK
IKVGKNINLDLQRMDAIREAVGDDIHLRLDANQGWSSKEAIYAIKKMEDKGFNIEFVE
QPVKAEDLEGMKAVTENVSTLILADESVFSPKDAIEIIRNRAADIINIKLMKTGGIRN
ALRICAIAEMYGVECMIGCMLESKLSVTAAVHLAAAKSVITKVDLDGPLLCKEDPIEG
GAIFQDYKITVSDDPGFGFKNIDGIIWDS"
misc_feature 488686..489747
/locus_tag="Amet_0475"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:34556"
misc_feature 488698..489666
/locus_tag="Amet_0475"
/note="L-Ala-D/L-Glu epimerase catalyzes the epimerization
of L-Ala-D/L-Glu and other dipeptides. The genomic context
and the substrate specificity of characterized members of
this family from E.coli and B.subtilis indicates a
possible role in the metabolism of...; Region:
L-Ala-DL-Glu_epimerase; cd03319"
/db_xref="CDD:48194"
misc_feature order(488755..488757,489088..489090,489163..489165,
489169..489171,489253..489255,489337..489339,
489412..489414,489568..489570,489574..489576,
489643..489645,489649..489651)
/locus_tag="Amet_0475"
/note="active site"
/db_xref="CDD:48194"
gene 489809..490738
/locus_tag="Amet_0476"
/db_xref="GeneID:5310519"
CDS 489809..490738
/locus_tag="Amet_0476"
/note="PFAM: peptidase U61, LD-carboxypeptidase A;
KEGG: bld:BLi01397 YkfA"
/codon_start=1
/transl_table=11
/product="peptidase U61, LD-carboxypeptidase A"
/protein_id="YP_001318362.1"
/db_xref="GI:150388313"
/db_xref="InterPro:IPR003507"
/db_xref="GeneID:5310519"
/translation="MLKPKALKKGDTIGVIAPSSPALPEKVTGANKKLEEMGFKVKMA
SSCYETHGYLAGQDKLRADDLNDMFKDKEIDGIICLRGGYGAPKIVDKIDYEAIKANP
KVFVGYSDITSLHIAMNQISGLVTFHGPMAATDIAGGLDDFSEKEFIRAITNPEPMGM
IQNPNGIKVQTLVGGEAKGTIIGGNLALLTATMGTPYEVDTKGKLLLIEEIGEEPYRV
DRMLTQLALGGKFKDAAGIILGDWNDCDPQKHKSSLSLMEVFKEIIVPFGKPTIYDLK
AGHCRPKVTVPFGVNAHLNADTGELVMEESATI"
misc_feature 489845..490687
/locus_tag="Amet_0476"
/note="LD-Carboxypeptidase, a serine protease, includes
microcin C7 self immunity protein; Region: Peptidase_S66;
cd07025"
/db_xref="CDD:132882"
misc_feature order(490067..490072,490376..490381,490385..490390,
490454..490459,490463..490468,490475..490480,
490592..490597)
/locus_tag="Amet_0476"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132882"
misc_feature order(490133..490135,490433..490435,490643..490645)
/locus_tag="Amet_0476"
/note="catalytic triad [active]"
/db_xref="CDD:132882"
gene complement(490845..491831)
/locus_tag="Amet_0477"
/db_xref="GeneID:5310520"
CDS complement(490845..491831)
/locus_tag="Amet_0477"
/EC_number="3.4.13.19"
/note="PFAM: peptidase M19, renal dipeptidase;
KEGG: tko:TK2040 microsomal dipeptidase homolog"
/codon_start=1
/transl_table=11
/product="membrane dipeptidase"
/protein_id="YP_001318363.1"
/db_xref="GI:150388314"
/db_xref="InterPro:IPR008257"
/db_xref="GeneID:5310520"
/translation="MDKKKIIEDMIIIDGHTDIPRDVYLREKKGEENVFKENHYLQLK
KSGVNIIFANIFTKCPPRDSMKVAMLHIENLLGTIAKYDDVVLIKNKSDLDFVLKTEK
LGIVLSLEGVEPLDSSLALLNIYYQLGLRAGMLTWNSANEFASGADHIEGGLTDLGKL
TIEKMNELGIIVDVSHLNEESFWDVLQLNKRPTIASHSNAKALFNHPRNLTDQQMLAI
AKNGGVIGAVSYFSKVDKENPDKIRHSDDDTETIDDFIKHIEYMVNLLGYDHVAFGFD
FNIYLGDFGVEGLESAENIKDVIALLIDRGHSIEDIRKIAGGNWIRILNTIL"
misc_feature complement(490863..491789)
/locus_tag="Amet_0477"
/note="renal dipeptidase (rDP), best studied in mammals
and also called membrane or microsomal dipeptidase, is a
membrane-bound glycoprotein hydrolyzing dipeptides and is
involved in hydrolytic metabolism of penem and carbapenem
beta-lactam antibiotics; Region: rDP_like; cd01301"
/db_xref="CDD:30044"
misc_feature complement(order(490989..490991,491004..491006,
491208..491210,491241..491243,491304..491306,
491502..491504,491664..491666,491778..491780,
491784..491786))
/locus_tag="Amet_0477"
/note="active site"
/db_xref="CDD:30044"
misc_feature complement(order(491448..491453,491460..491465,
491469..491474,491601..491603,491613..491615,
491622..491627,491631..491639,491658..491660))
/locus_tag="Amet_0477"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:30044"
gene 492143..492961
/locus_tag="Amet_0478"
/db_xref="GeneID:5310521"
CDS 492143..492961
/locus_tag="Amet_0478"
/note="PFAM: regulatory protein, MerR;
KEGG: dsy:DSY3698 hypothetical protein"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_001318364.1"
/db_xref="GI:150388315"
/db_xref="InterPro:IPR000551"
/db_xref="GeneID:5310521"
/translation="MKYSIGQFAATLGVTVDTLRLYEKYGIISPIKNSENNYRYFNDL
DARNLLTSRWYRSIQIPLQDAAILTQNASLDNIAEKVNETQLNLEAEIKKSTMLLNKI
VGINKELKEIKTEINKCKIKAMPGMYRLKQTKGNVLIQEDFLRDLVDTWMNALPYTFF
SFRIEKKEIVSLKKAFEYSWGLAIFEDEIGCFDVKMNENVEYISPKVYLSSIILSSQG
EHITRDSIQFMMDYIKENNYKITEDIIGKIILTEKINGKNKSYLELNIPIQSHE"
misc_feature 492149..492502
/locus_tag="Amet_0478"
/note="Predicted transcriptional regulators
[Transcription]; Region: SoxR; COG0789"
/db_xref="CDD:31132"
misc_feature 492149..492418
/locus_tag="Amet_0478"
/note="Helix-Turn-Helix DNA binding domain of MerR-like
transcription regulators; Region: HTH_MerR-like; cd00592"
/db_xref="CDD:133378"
misc_feature order(492152..492160,492200..492202,492251..492259)
/locus_tag="Amet_0478"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133378"
misc_feature order(492293..492295,492302..492304,492314..492319,
492344..492346,492395..492397,492407..492409)
/locus_tag="Amet_0478"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133378"
gene 493222..495150
/locus_tag="Amet_0479"
/db_xref="GeneID:5310522"
CDS 493222..495150
/locus_tag="Amet_0479"
/note="PFAM: fumarate reductase/succinate dehydrogenase
flavoprotein domain protein; HI0933 family protein; FAD
dependent oxidoreductase; FMN-binding domain protein;
FAD-dependent pyridine nucleotide-disulphide
oxidoreductase;
KEGG: eca:ECA0910 putative flavoprotein subunit of a
reductase"
/codon_start=1
/transl_table=11
/product="fumarate reductase/succinate dehydrogenase
flavoprotein domain-containing protein"
/protein_id="YP_001318365.1"
/db_xref="GI:150388316"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR004792"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR007329"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:5310522"
/translation="MKKKHIIKRLSIMSFYMLLIVLMMSGCTQQETNSIQASGYTAGT
YAAEADGYGGPVKVEVTFSETEITDAEILSHSETAGLGDAALERMKEQILVGQTLAVD
TVAGATISSSAMIAAIEDAVQQAGGDVEALKANGVEKPSEGKIEKLEADVVVVGAGAS
GVSAAIAAADEGANVIIIEKTGAIGGASNLSWAGKFLNSSAAIEDELIIDEEKEIAEW
IENNHWRVDAAVIRQYVTQSGETYDWLTEKGYMTQYINFAGEQMHMLPPYETRQETLR
EMLAESVEKQDGQVFTETAAKQLMTNQAGDVVGVIAEKADGTTLEITAKSVIMATGGY
GANAEMVKEYFGFEGVNGGLGQNIGEGIKMAWEAGARVPDNIGGQMLHQTLARATNDL
KTEYESFEASYPLMLTYLPNFMNVGTSGARFRDEAATLKAVAAANTSAFHGPYHYVIV
SQLQLDSLMAEGMNGVKAPKLPGMPPEFYMDFSDQFTLDNPWENADKVFDSMVEKGHG
FKGNTMEELAENAGMDVAVFVETLKNYEEATKTGADTEFGKTADYLISMGEEGPYYAI
IAEINNLGSIGGIVVNRNFQVLNEARVPINGLYAVGVEAAGVLYNDTYVGNGVGIGYA
FTSGRLGGMQAASHVLGK"
misc_feature <493312..493533
/locus_tag="Amet_0479"
/note="FMN-binding domain; Region: FMN_bind; cl01081"
/db_xref="CDD:212254"
misc_feature 493894..495144
/locus_tag="Amet_0479"
/note="tricarballylate dehydrogenase; Validated; Region:
PRK08274"
/db_xref="CDD:181345"
gene 495476..496228
/locus_tag="Amet_0480"
/db_xref="GeneID:5310523"
CDS 495476..496228
/locus_tag="Amet_0480"
/note="PFAM:
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR)
carboxylase;
KEGG: tte:TTE0770 NCAIR mutase (PurE)-related proteins"
/codon_start=1
/transl_table=11
/product="1-(5-phosphoribosyl)-5-amino-4-imidazole-
carboxylate (AIR) carboxylase"
/protein_id="YP_001318366.1"
/db_xref="GI:150388317"
/db_xref="InterPro:IPR000031"
/db_xref="GeneID:5310523"
/translation="MDIHELLKKVKNNEMDIESAEALLKKLPYEDLGFAKLDHHRKLR
SGFGEVVYCSGKSTEHLIKIFQSFNEKKVDILGTRATKEQFQAVKAIVEEAEYDELSR
IIKVVRSDIKKIGLIAVCTGGTSDIPVAEEAAQTAEFFGSNVMRIHDVGVAGIHRLFS
KMEEINKANVIVAVAGMEGTLPGVIAGLVDKPVIAVPTSVGYGSNFNGLSALLTMLNS
CAEGISVVNIDNGFGAGYLGTQINRLAVKGSE"
misc_feature 495476..496222
/locus_tag="Amet_0480"
/note="NCAIR mutase (PurE)-related proteins [General
function prediction only]; Region: COG1691"
/db_xref="CDD:31877"
misc_feature 495818..496198
/locus_tag="Amet_0480"
/note="AIR carboxylase; Region: AIRC; smart01001"
/db_xref="CDD:198069"
gene 496221..497486
/locus_tag="Amet_0481"
/db_xref="GeneID:5310524"
CDS 496221..497486
/locus_tag="Amet_0481"
/note="PFAM: protein of unknown function DUF111;
KEGG: cth:Cthe_0369 protein of unknown function DUF111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318367.1"
/db_xref="GI:150388318"
/db_xref="InterPro:IPR002822"
/db_xref="GeneID:5310524"
/translation="MSNQLYLECYSGISGDMAVSALLDLGADVDVLKKSLHSLNLEGY
EINIGRRQKCGIDACYFDVVLEGEANHHHDHQEKHDHHHGGHPVHRNIKDIYEIIDNS
QISDRSKILSKKIFHVVAKAEAKAHGIAIDEVHFHEVGAVDSIVDIVAAAVCLDNLEI
NEVMISDLYEGSGHVKCQHGVLPVPVPAVANIVMDNGLNLRITDTRGELVTPTGAAIA
AAIKTKDTLPASYGIKKIGIGSGTKDLPKANILRAYIIEDNRNYPKKTVAVEDHIDSL
DDGEAWVLETNIDDATGESLGFTMERLLENGANDVFFSPIYMKKNRPAYKLSVICTKE
NVKIMESIIFKNTTTIGIRKHKIRRTVLKREVTTIDTKYGQVRVKVCEFENETYYYPE
YEDIKRICNETGLGFQRVYDEVEKTKTVG"
misc_feature 496233..497456
/locus_tag="Amet_0481"
/note="Protein of unknown function DUF111; Region: DUF111;
pfam01969"
/db_xref="CDD:145249"
gene 497536..498348
/locus_tag="Amet_0482"
/db_xref="GeneID:5310525"
CDS 497536..498348
/locus_tag="Amet_0482"
/note="PFAM: ExsB family protein;
KEGG: chy:CHY_1281 conserved hypothetical protein
TIGR00268"
/codon_start=1
/transl_table=11
/product="ExsB family protein"
/protein_id="YP_001318368.1"
/db_xref="GI:150388319"
/db_xref="InterPro:IPR004479"
/db_xref="InterPro:IPR005232"
/db_xref="GeneID:5310525"
/translation="MLLQEKYEFLQNYIKNLGSLAVSYSGGVDSTFLLKVAYDVLGDN
VIAVTATSSTYPQREFEEAKRWIKDIGAKHIIIESEELDIDGFSENPINRCYYCKSEL
FTKVREVAVENNIEYVADGSNQDDLGDFRPGMQAASELKVVSPLREAKMTKDEIRAIS
KQLDLPTWSKPAFACLSSRFPYGHQITREKLTMVEQAEDYLYGLGFRQLRVRHHEDTA
RIELGESEFDRFINKDLMRQVGKKFNEIGYTYVALDLNGYRTGSMNEVLKDI"
misc_feature 497536..498345
/locus_tag="Amet_0482"
/note="ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only]; Region: COG1606"
/db_xref="CDD:31794"
misc_feature 497593..498198
/locus_tag="Amet_0482"
/note="This is a subfamily of Adenine nucleotide alpha
hydrolases superfamily. Adenine nucleotide alpha
hydrolases superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which binds
to Adenosine group. This subfamily; Region:
Alpha_ANH_like_I; cd01990"
/db_xref="CDD:30177"
misc_feature order(497602..497610,497614..497625,497680..497682,
497686..497688)
/locus_tag="Amet_0482"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30177"
gene 498533..500191
/locus_tag="Amet_0483"
/db_xref="GeneID:5310526"
CDS 498533..500191
/locus_tag="Amet_0483"
/note="PFAM: peptidase M20;
KEGG: cac:CAC0367 arginine degradation protein (gene
RocB)"
/codon_start=1
/transl_table=11
/product="peptidase M20"
/protein_id="YP_001318369.1"
/db_xref="GI:150388320"
/db_xref="InterPro:IPR002933"
/db_xref="GeneID:5310526"
/translation="MGNVDEHLLESIDLLLTDLVGIKSDTGTELEINVENFMHNWLKE
LQYFREKPEYLGCYKLPQDPLKRGAIWALRKGEGKKTIILLNHHDVVNADDYGLLSSY
AYNPEILMTRLKKIKLPQEARDDLGSGKWIFGRGTADMKAGIAIQLALLEQYSKVAHF
KGNILLLSVPDEESLSRGMIASLSLLNDLKEKHSLNYELVINCEPHERSEEGAGTIHG
GSVGKMMPVIYVRGKQSHIGNVFQGFNPISLLSKIADEVELNPDFSDEAHNEVSPPPS
FVCFRDLKKTYDVSIPNAAVGYFSILTLKSTPEEITDRLKDISIKASEETIYKIGKKH
KDYIDKLGSSEKVARWDVKITTFAELYEEAQGTSGELFALDYNKTVEKIKKEIENKLI
GLADATTILIEKTLAYIDDMDPRVIIGFIPPYYLHVSNRDFHHLSSSIEGLSDEINRF
TLNKWNEMYRSQNYFMGISDMSYFYMNERTDVVTSLGPNMPLWNKIYHIPFGEIEKLS
IPVINIGPWGKDIHKFTERVYKRDLLERTPSIIKHVMEHLLDEK"
misc_feature 498590..500179
/locus_tag="Amet_0483"
/note="M20 Peptidase Arginine utilization protein, RocB;
Region: M20_ArgE_RocB; cd05654"
/db_xref="CDD:193531"
misc_feature 498590..500179
/locus_tag="Amet_0483"
/note="Arginine degradation protein (predicted deacylase)
[Amino acid transport and metabolism]; Region: RocB;
COG4187"
/db_xref="CDD:33922"
misc_feature order(498791..498793,498947..498949,499046..499051,
499142..499144,500096..500098)
/locus_tag="Amet_0483"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:193531"
misc_feature order(499205..499207,499238..499249,499307..499309,
499313..499318,499325..499330,499334..499339,
499346..499348,499388..499390,499394..499417,
499757..499762,499784..499786,499790..499792,
500030..500032)
/locus_tag="Amet_0483"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193531"
gene 500230..501423
/locus_tag="Amet_0484"
/db_xref="GeneID:5310527"
CDS 500230..501423
/locus_tag="Amet_0484"
/EC_number="6.2.1.5"
/note="TIGRFAM: succinyl-CoA synthetase, beta subunit;
PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp
domain protein;
KEGG: gka:GK1208 succinyl-CoA synthetase beta subunit
(succinate-CoA ligase beta subunit)"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase subunit beta"
/protein_id="YP_001318370.1"
/db_xref="GI:150388321"
/db_xref="InterPro:IPR005809"
/db_xref="InterPro:IPR005811"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR013650"
/db_xref="GeneID:5310527"
/translation="MNIHEYQGKEIMKQYGISVPRSRITFTVEEAVQAAIDLGCEVIA
VKAQIHAGGRGKAGGVKITRSLEETKSAAEAILDKILITKQTGPEGKVVNQVLIEEGL
KIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQA
RRLAFNMGINEACLQEAAQCIMNIYRLFMEKDCSMVEINPLITTEEHKVVALDCKVCF
DDNSLCRHPEILKYRDLTEEDPREVQASKYDLSYISLSGNIGCMVNGAGLAMATMDMI
DHFGGAPANFLDVGGGATAEKVKEAFKILISDKKVAGIFVNIFGGIMKCDVIATGILQ
AVNALDLDVPLVVRLEGTNVELGKEILKSSWLDVITVNSMAEGAEKIVALVNGKGVVR
DERLN"
misc_feature 500230..501393
/locus_tag="Amet_0484"
/note="succinyl-CoA synthetase subunit beta; Provisional;
Region: sucC; PRK00696"
/db_xref="CDD:179088"
misc_feature 500233..500835
/locus_tag="Amet_0484"
/note="ATP-grasp domain; Region: ATP-grasp_2; pfam08442"
/db_xref="CDD:149489"
misc_feature 501013..501375
/locus_tag="Amet_0484"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:201299"
gene 501407..502309
/locus_tag="Amet_0485"
/db_xref="GeneID:5310528"
CDS 501407..502309
/locus_tag="Amet_0485"
/EC_number="6.2.1.5"
/note="Catalyzes the only substrate-level phosphorylation
in the TCA cycle"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase subunit alpha"
/protein_id="YP_001318371.1"
/db_xref="GI:150388322"
/db_xref="InterPro:IPR003781"
/db_xref="InterPro:IPR005810"
/db_xref="InterPro:IPR005811"
/db_xref="GeneID:5310528"
/translation="MSVLIDENTKVIVQGITGFTGLFHTKQAMEYGTNIVAGVTPTKG
GTTVEGIPVFNTVKEAVKATGGNTSVIYVPPIFAADAILEATEAELELVICITEGIPV
MDMIKVKAFMKGKKTRLIGPNCPGVITPEVCKIGIMPGYIHKKGHVGVVSRSGTLTYE
AVHQLSTRGIGQSTAVGIGGDPVNGTSFIDMLKAFNEDEETYAVMMIGEIGGTAEEEA
AEWIQSNMTKPVVAFIGGKTAPPSKRMGHAGAVISGGKGKASSKIKTLEACGIKVAST
PDVMGETLIAVLKENHLLEKCMID"
misc_feature 501407..502279
/locus_tag="Amet_0485"
/note="succinyl-CoA synthetase subunit alpha; Validated;
Region: PRK05678"
/db_xref="CDD:180194"
misc_feature 501416..501706
/locus_tag="Amet_0485"
/note="CoA binding domain; Region: CoA_binding;
smart00881"
/db_xref="CDD:197949"
misc_feature 501857..>502147
/locus_tag="Amet_0485"
/note="CoA-ligase; Region: Ligase_CoA; cl02894"
/db_xref="CDD:207776"
gene 502447..503469
/locus_tag="Amet_0486"
/db_xref="GeneID:5310529"
CDS 502447..503469
/locus_tag="Amet_0486"
/note="KEGG: cth:Cthe_0320 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001318372.1"
/db_xref="GI:150388323"
/db_xref="GeneID:5310529"
/translation="MTNLIRTLNPLAMLMILMIVTILVSAIIMTFMVKKKYEKISEDL
HNSSEDERNIYEYAVLNSIIEDYKTAATRNPNEVNTQAIIEKNFNRVHRGLSLGERFV
RQAVSLMIILGLLGTFYGLTLSIADLVALLGGSGSSEMLNSMDSIVQGLINSVSGMSV
AFITSLFGIASSIILTIIIVFVNIEDSKEAIMVEIEEYLDNKVALDFARQQALDPAAP
RSNLEIGMGQVMEGFTNSLNEKLSVLLETSAEQLIAATKESQTSAEAIQSSMESFNHS
IETFSENTRDFSEFNHNLRTNIERMDVAFADLVQDLKENGKDLSKNQEAVESLSRAID
KLSERL"
gene 503500..504444
/locus_tag="Amet_0487"
/db_xref="GeneID:5310530"
CDS 503500..504444
/locus_tag="Amet_0487"
/note="PFAM: OmpA/MotB domain protein;
KEGG: cjj:CJJ81176_0627 chemotaxis protein MotB, putative"
/codon_start=1
/transl_table=11
/product="OmpA/MotB domain-containing protein"
/protein_id="YP_001318373.1"
/db_xref="GI:150388324"
/db_xref="InterPro:IPR006665"
/db_xref="GeneID:5310530"
/translation="MKARKRSFKKFREDQNFWPSFTDMISTIALILFFLMILAYVQNI
VTGSNLEYARRQLQDTQQRLEASNLEISQAEDQLRLLTDRVDEIKAEVEDGEIALRLS
ELQIEDQSQIIAESNRELGNLRSRLQGIAVLRLDVLNRVKDSVEEEMARTRDRRDSPV
YIADNGNIVIDEELVFDLNSYQIKPAGRQVLDELAMAFENILRDPEVRVNIDAINIQG
HTDDIGSAEYNRNLSANRSVEVVNYLLNSNPTLENRYASYFMASAYSKFRPIASNATE
ANRAQNRRIEISIILKDSNIQEVINEYLADSMNAFMNE"
misc_feature <503917..504369
/locus_tag="Amet_0487"
/note="Outer membrane protein and related
peptidoglycan-associated (lipo)proteins [Cell envelope
biogenesis, outer membrane]; Region: OmpA; COG2885"
/db_xref="CDD:32711"
misc_feature 504019..504366
/locus_tag="Amet_0487"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(504031..504036,504157..504162,504169..504171,
504181..504186,504193..504195,504334..504336,
504346..504348)
/locus_tag="Amet_0487"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 504719..506431
/locus_tag="Amet_0488"
/db_xref="GeneID:5310531"
CDS 504719..506431
/locus_tag="Amet_0488"
/note="PFAM: ATP-binding region, ATPase domain protein;
histidine kinase, dimerisation and phosphoacceptor region;
KEGG: oih:OB2520 two-component sensor histidine kinase
involved in degradative enzyme"
/codon_start=1
/transl_table=11
/product="integral membrane sensor signal transduction
histidine kinase"
/protein_id="YP_001318374.1"
/db_xref="GI:150388325"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR011712"
/db_xref="GeneID:5310531"
/translation="MYPQLYKKISFLKEQSEIMKIIFLYRYVSLIVTSSFYLLADSTH
SFENKIFIVACISISSVIISYLYIKNQNCTDKIMILILIETIGNSFILIPSGGLNSPY
VWYSLNTIVIASVALHKKYCWINLVVYLFSSTYLSHLILQKEQTLMQIISEESNLILS
FILITGIIQLLTKYAKRVQDEGLKLTETNRKLVLANKKNKESLGYIMELYEATQLFTT
QETPSDLIELMLDYSQKVMKTDTVIFIHPRREGKKVVIESNNLAEDLEEVICCEISSI
WHNTVESEIPIEMIIKDQKYVFIAIKYNYKVFGILGITRTSTKMQNNYEEITEQLRFL
ASLSSITLEKFELEKVTEGLLINEEQNRIANEIHDGILQRLFSTSCGVFSIVKRVREM
NTDEIEEELNIIRRAVNNVMKDLRSTVYGLSWKKDGANNFISDIESYINEIKALNNID
IKFDLTGDDELLSIAQKKAMYRIICEGIGNAVRHGNAQNIEVSIISRRQGMSLIINDD
GKGFNMRGIDKSERFGLGVKNIYHLTHSLNGTIKFESQIGKGTRINIVIPNVIQEMYK
EEVV"
misc_feature 505442..506392
/locus_tag="Amet_0488"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature 505793..505984
/locus_tag="Amet_0488"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature 506126..506389
/locus_tag="Amet_0488"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(506144..506146,506156..506158,506165..506167,
506231..506233,506237..506239,506243..506245,
506249..506254,506288..506299,506345..506347,
506351..506353,506366..506371,506375..506377)
/locus_tag="Amet_0488"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 506156..506158
/locus_tag="Amet_0488"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(506243..506245,506249..506251,506288..506290,
506294..506296)
/locus_tag="Amet_0488"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 506428..507045
/locus_tag="Amet_0489"
/db_xref="GeneID:5310532"
CDS 506428..507045
/locus_tag="Amet_0489"
/note="PFAM: regulatory protein, LuxR; response regulator
receiver;
KEGG: tte:TTE1681 response regulators consisting of a
CheY-like receiver domain and a HTH DNA-binding domain"
/codon_start=1
/transl_table=11
/product="two component LuxR family transcriptional
regulator"
/protein_id="YP_001318375.1"
/db_xref="GI:150388326"
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:5310532"
/translation="MRILIVDDHPLVRKGIASILFLEKDVHEIKEAENIEEAIDMMAK
FSPEITLIDLNLGRQDGLEIVNKARAKGMATKFIVLTSSSKREDFLRAREAGVDGYIL
KEAFAEDILYALRIVLRGKKFIDPEVIQYQTSDIRENSHLDELTPRERDVLTELGKGL
SNFEIGKQLFISEHTVKKHVSNILSKLELNHRTQAALFVNNSINI"
misc_feature 506428..507024
/locus_tag="Amet_0489"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 506437..506781
/locus_tag="Amet_0489"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(506446..506451,506584..506586,506608..506610,
506668..506670,506725..506727,506734..506739)
/locus_tag="Amet_0489"
/note="active site"
/db_xref="CDD:29071"
misc_feature 506584..506586
/locus_tag="Amet_0489"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(506593..506598,506602..506610)
/locus_tag="Amet_0489"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 506734..506742
/locus_tag="Amet_0489"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 506860..507030
/locus_tag="Amet_0489"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(506863..506871,506908..506916,506938..506943,
506947..506952,506956..506970,507001..507003)
/locus_tag="Amet_0489"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(506896..506898,506902..506904,506908..506910,
507001..507009,507016..507018,507025..507030)
/locus_tag="Amet_0489"
/note="dimeriza 