LOCUS NC_009881 1231060 bp DNA circular BCT 27-SEP-2012
DEFINITION Rickettsia akari str. Hartford chromosome, complete genome.
ACCESSION NC_009881
VERSION NC_009881.1 GI:157825125
DBLINK Project: 58161
BioProject: PRJNA58161
KEYWORDS .
SOURCE Rickettsia akari str. Hartford
ORGANISM Rickettsia akari str. Hartford
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
REFERENCE 1 (bases 1 to 1231060)
AUTHORS Madan,A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Dasch,G. and Eremeeva,M.
TITLE Complete Genome Sequence of Rickettsia akari
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1231060)
AUTHORS Madan,A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Dasch,G. and Eremeeva,M.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2007) Neurogenomics Research Lab, University of
Iowa, 200 B EMRB, Iowa City, IA 52242, USA
REFERENCE 3 (bases 1 to 1231060)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000847.
Annotation was added by the NCBI Prokaryotic Genomes Automatic
Annotation Pipeline Group. Information about the Pipeline can be
found here:
http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
aware that the annotation is done automatically with little or no
manual curation.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1231060
/organism="Rickettsia akari str. Hartford"
/mol_type="genomic DNA"
/strain="Hartford"
/host="Homo sapiens"
/db_xref="taxon:293614"
gene 1..822
/locus_tag="A1C_00005"
/db_xref="GeneID:5645715"
CDS 1..822
/locus_tag="A1C_00005"
/note="COG1806 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492846.1"
/db_xref="GI:157825126"
/db_xref="GeneID:5645715"
/translation="MTKLIIHLVSDSSVQTAKYAANSALAQFTSVKPKLYHWPMIRNL
ELLNEVLSKIESKHGIVLYTIADQELRKALTKFCYELKIPCISVIGKIIKEMSVFSCI
EIEKEQNYNYKFDKTYFDTLNAIDYAIRHDDGQMLNELSEADIILIGPSRTSKTPTSV
FLAYNGLKAANIPYVYNCPSPDFIEKDIDQLVVGLVINPNRLIEIREARLNLLQINDN
KSYTDFNIVQKECLEVRKICDQKNWPVIDVSTRSIEETAALIMRIYYNRKNKYNK"
misc_feature 1..813
/locus_tag="A1C_00005"
/note="PEP synthetase regulatory protein; Provisional;
Region: PRK05339"
/db_xref="CDD:180026"
gene 964..1383
/locus_tag="A1C_00010"
/db_xref="GeneID:5645496"
CDS 964..1383
/locus_tag="A1C_00010"
/note="COG0526 Thiol-disulfide isomerase and thioredoxins"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_001492847.1"
/db_xref="GI:157825127"
/db_xref="GeneID:5645496"
/translation="MIYSINYFNMFIGSRDQVAGLQQKSIITQHIEDKMANNVTDSSF
KKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNISSEY
GIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSV"
misc_feature 1099..1371
/locus_tag="A1C_00010"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(1153..1155,1162..1164)
/locus_tag="A1C_00010"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene 1389..2138
/locus_tag="A1C_00015"
/db_xref="GeneID:5645245"
CDS 1389..2138
/locus_tag="A1C_00015"
/note="COG1134 ABC-type polysaccharide/polyol phosphate
transport system, ATPase component"
/codon_start=1
/transl_table=11
/product="O-antigen export system ATP-binding protein
RfbE"
/protein_id="YP_001492848.1"
/db_xref="GI:157825128"
/db_xref="GeneID:5645245"
/translation="MSLSHSKVFIEITNGYVEGVDTHKRAQGLKAFFLKKGVCLSPNI
PILNDINFSCQEGEKIAFIGSNGSGKSSLLKLIAGIYPLKSGTVKVHGDIAAIIDMGV
GFEPEQTGRENIKMLMLYNNMLDKYSRKIENEIIDFSELGNKIDLPIKNYSSGMLSRL
AFSVSIFQNPQILLLDEIFAAGDSCFVEKSINLMKSKFKNTPISIIVSHQEEIIKDNC
ERCILLKDGNIIGDGTPSEMFKIYNQQQGNS"
misc_feature 1389..2135
/locus_tag="A1C_00015"
/note="ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagH; COG1134"
/db_xref="CDD:31329"
misc_feature 1416..2087
/locus_tag="A1C_00015"
/note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and...;
Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:72979"
misc_feature 1578..1601
/locus_tag="A1C_00015"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72979"
misc_feature order(1587..1592,1596..1604,1806..1808,1914..1919,
2013..2015)
/locus_tag="A1C_00015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72979"
misc_feature 1797..1808
/locus_tag="A1C_00015"
/note="Q-loop/lid; other site"
/db_xref="CDD:72979"
misc_feature 1842..1871
/locus_tag="A1C_00015"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72979"
misc_feature 1902..1919
/locus_tag="A1C_00015"
/note="Walker B; other site"
/db_xref="CDD:72979"
misc_feature 1926..1937
/locus_tag="A1C_00015"
/note="D-loop; other site"
/db_xref="CDD:72979"
misc_feature 2001..2021
/locus_tag="A1C_00015"
/note="H-loop/switch region; other site"
/db_xref="CDD:72979"
gene 2139..2915
/locus_tag="A1C_00020"
/db_xref="GeneID:5645246"
CDS 2139..2915
/locus_tag="A1C_00020"
/note="COG1682 ABC-type polysaccharide/polyol phosphate
export systems, permease component"
/codon_start=1
/transl_table=11
/product="O-antigen export system permease protein RfbA"
/protein_id="YP_001492849.1"
/db_xref="GI:157825129"
/db_xref="GeneID:5645246"
/translation="MIRYFFSKKYWRAIALLVKASIIRQNKDSFLGSLWGLIQPFIHI
IVISYFFGFLLRQPREFMVMNLVGGIPLWSFIVSSLTICSSSLVTRDQIIKKVRISKT
FFPVADSLGQLYTLICSFSAMYFAFILLFPEKFSWQIVFMPILLLPLIICVISGSIAV
AFLTPYIRDIPQMLSVILGVIYWSIPIVYPYSLIPESKKIYFEFNPFFLVIRPVQALV
IDGTLPDMMLIVKSVIVAFITVCISYLIYRQFSKKVIYYL"
misc_feature 2139..2912
/locus_tag="A1C_00020"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:31868"
gene 2912..5983
/locus_tag="A1C_00025"
/db_xref="GeneID:5645247"
CDS 2912..5983
/locus_tag="A1C_00025"
/note="undetermined function"
/codon_start=1
/transl_table=11
/product="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase"
/protein_id="YP_001492850.1"
/db_xref="GI:157825130"
/db_xref="GeneID:5645247"
/translation="MKLGFNLDFNELDLTGLKKLDQIFLDYLFKADKSLHKDLMLFRS
TPLYIIPQDYSEFLLKISPQLDDFLAELFCISKEITISRLKHKDFDIIYECKRKFVQR
VAIKKYPPEKIKDIDFEDVYLKLTNLIGTNFTSREFAKQIIIWQQDEENFAEELDIAT
RYAACRVYDHCHSSSLCHSRESWNLEKLSLDPRFHRDDIRNDDILFNIHQKLDKENLI
DDNKILRYQKNERVDFDYTDSFLNLDEALNDSHYCIYCHKQGKDSCSKGISVIPRLDH
GMITGGCPLKQKISEMNYVKAQGFNLSALAIIVIDNPMVAATGHRICNDCSKACIYQK
QDPVNIPLIETNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPQESTNYNILVTGLGP
AGFSLSYYLLRSGHNVTAIDGLKITPLSFDVYKPIKFWHEYKNLLSERIPRGFGGVAE
YGITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKKQVLDLGFDHIAFCIGAGQ
PKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMLIRMPIAIIGGGLTSLDAAT
ESLYYYKKQVEEFAKYYIEKDLEEEDKEIAEEFIAHARLFKEAKNNEELRKVFKKIGG
ATVYYRGKLQDSPAYKLNHKELIYTLALGVDFKENMQPLRINVDKYGHVEGVEFSVIQ
WLDHRIHQEAHCNNDFLDPMVKPLDDTVVLKAKTVIMAIGIENNTQFDENKYSYFGDC
NPQYSGSVVKAIASSKEGYDAINKRLINNNPSFKGSYKDFITQLDYLLTSRVNKINIL
DDKAFELIIHSPLAAKNFKFGQFFRLQNYSEDASKLIEPVALSPVDIDVEKGLIRFVI
YEVGNSTSLCKTLSENEKVVLMGPTGLPLEIPQNKKIIIVDSEAGNIGLLKVLKENNN
EVIFVTYPDIKNRKLTSVDIVIINDSPEVAEELQELKIFDENTELIVSVNASMQCMMK
GICGQCIQKVKGEQEYIFACSRHNQNAEIVDFKSLKTRLRQNSLQEKMFRH"
misc_feature 2912..5980
/locus_tag="A1C_00025"
/note="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase; Validated; Region:
PRK06567"
/db_xref="CDD:168614"
misc_feature 5291..5887
/locus_tag="A1C_00025"
/note="FAD/NAD binding domain (electron transfer subunit)
of dihydroorotate dehydrogenase-like proteins.
Dihydroorotate dehydrogenases (DHODs) catalyze the only
redox reaction in pyrimidine de novo biosynthesis. They
catalyze the oxidation of (S)-dihydroorotate...; Region:
DHOD_e_trans_like; cd06192"
/db_xref="CDD:99789"
misc_feature order(5417..5419,5423..5434,5474..5482,5498..5506,
5609..5611,5804..5809)
/locus_tag="A1C_00025"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5423..5425,5429..5434)
/locus_tag="A1C_00025"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5495..5497,5504..5506,5513..5515,5525..5527,
5549..5551,5555..5557)
/locus_tag="A1C_00025"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5594..5596,5606..5617,5621..5623)
/locus_tag="A1C_00025"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99789"
misc_feature order(5609..5614,5726..5731)
/locus_tag="A1C_00025"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5816..5818,5834..5836,5843..5845,5885..5887)
/locus_tag="A1C_00025"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99789"
gene complement(6021..6737)
/locus_tag="A1C_00030"
/db_xref="GeneID:5645248"
CDS complement(6021..6737)
/locus_tag="A1C_00030"
/EC_number="2.3.1.129"
/note="catalyzes the addition of
(R)-3-hydroxytetradecanoyl to the glucosamine disaccharide
in lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_001492851.1"
/db_xref="GI:157825131"
/db_xref="GeneID:5645248"
/translation="MCVIGPEVVLHDNIELKSHVVIEGITEIGKNTVIYPFASIGQPP
QILKYTNERSSTIIGSNNTIREYVTVQAGSQGGGMITRIENNNLFMVGVHIGHDCKIG
NNVVFANYVSLAGHIEVGDYAIIGGLSAVHQYAKIGKYSMIGGLSPVGADVIPFGLVS
SKRAVLEGLNLIGMNRKGFDKAESLSALKAIKEIFSGEGNFAERIKQVAEKYKNNSIV
MQIIDFLNQDSSRAFCRFEK"
misc_feature complement(6036..6734)
/locus_tag="A1C_00030"
/note="acyl-[acyl-carrier-protein]--UDP-N-
acetylglucosamine O-acyltransferase; Region: lipid_A_lpxA;
TIGR01852"
/db_xref="CDD:188173"
misc_feature complement(6039..6734)
/locus_tag="A1C_00030"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature complement(order(6207..6212,6228..6230,6303..6305,
6339..6344,6390..6392,6447..6449,6456..6458,6525..6527,
6594..6596,6603..6605))
/locus_tag="A1C_00030"
/note="active site"
/db_xref="CDD:100042"
gene complement(6725..6814)
/gene="fabZ"
/locus_tag="A1C_00035"
/db_xref="GeneID:5644862"
CDS complement(6725..6814)
/gene="fabZ"
/locus_tag="A1C_00035"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_001492852.1"
/db_xref="GI:157825132"
/db_xref="GeneID:5644862"
/translation="MANNIHTTAIIAEGAKLGENVKIGPYCVL"
misc_feature complement(<6731..6805)
/gene="fabZ"
/locus_tag="A1C_00035"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; Region: LbetaH;
cl00160"
/db_xref="CDD:193687"
gene 6801..6926
/locus_tag="A1C_00040"
/db_xref="GeneID:5644863"
CDS 6801..6926
/locus_tag="A1C_00040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492853.1"
/db_xref="GI:157825133"
/db_xref="GeneID:5644863"
/translation="MLFATTFSYDLSLIIAVNLLSAAISPSTVTVLENFHTLVLC"
gene complement(6824..7261)
/gene="fabZ"
/locus_tag="A1C_00045"
/db_xref="GeneID:5644864"
CDS complement(6824..7261)
/gene="fabZ"
/locus_tag="A1C_00045"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_001492854.1"
/db_xref="GI:157825134"
/db_xref="GeneID:5644864"
/translation="MIIDITEIMDLIPHRYPFLLVDRVLEIDLNKSILGIKNVTVNEP
QFTGHFPTRPVMPGVLMVEAMAQIAAILVAKSLGSTKNKDVFLMAIENAKFRRIVQPG
DTMHIHAVIDQQRTNVWKFSSTVTVEGEMAAESKFTAMIKDKS"
misc_feature complement(6836..7228)
/gene="fabZ"
/locus_tag="A1C_00045"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene complement(7480..8520)
/gene="lpxD"
/locus_tag="A1C_00050"
/db_xref="GeneID:5644865"
CDS complement(7480..8520)
/gene="lpxD"
/locus_tag="A1C_00050"
/note="adds the O-linked and N-linked 3(R)-hydroxy fatty
acids to the glucosamine disaccharide during lipid A
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_001492855.1"
/db_xref="GI:157825135"
/db_xref="GeneID:5644865"
/translation="MVSSNFYKNLGPRKLMAIIDFLHDIIEPPKVHEDIVIHDIKILQ
EASSNDISFLSNHKYSEFLKTTKAAACIVPKNFTGEANPNTVLIRAENSYFAYGKLID
FFYAPIKSYHAKIMKSAIVADSATIGKNCYIGHNVVIEDDVIIGDDSIIESGSFIGRG
VNIGKNARIEQHVSINYAIIGDDALILAGAKIGQEGFGFSTEKGVHHKIFHIGVVKIG
NNVEIGSNTTIDRGSLQDTIIEDLCRIDNLVQIGHGVKIGKGSIIVAQAGIAGSSTIG
KYCALGGQVGIAGHLNICDGVQVAAQGGVLQNIEACKIVGGSPAVPIMDWHRQSVIMK
QLVKTSNSKLKK"
misc_feature complement(7507..8490)
/gene="lpxD"
/locus_tag="A1C_00050"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:179158"
misc_feature complement(8209..8424)
/gene="lpxD"
/locus_tag="A1C_00050"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature complement(7540..8151)
/gene="lpxD"
/locus_tag="A1C_00050"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature complement(order(7546..7548,7558..7560,7609..7617,
7651..7653,7663..7671,7687..7689,7717..7725,7735..7737,
7741..7743,7759..7761,7771..7773,7777..7785,7789..7791,
7816..7824,7831..7833,7837..7839,7843..7845,7855..7857,
7891..7899,7930..7932,7936..7938,7954..7956,7960..7962,
7993..7995,7999..8001,8005..8007,8044..8046,8098..8103,
8113..8115))
/gene="lpxD"
/locus_tag="A1C_00050"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature complement(order(7618..7620,7651..7656,7705..7713,
7726..7731,7759..7764,7771..7773,7783..7785,7924..7932))
/gene="lpxD"
/locus_tag="A1C_00050"
/note="active site"
/db_xref="CDD:100043"
misc_feature complement(order(7651..7656,7705..7710,7759..7764,
7924..7932))
/gene="lpxD"
/locus_tag="A1C_00050"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature complement(order(7618..7620,7711..7713,7726..7731,
7771..7773,7783..7785))
/gene="lpxD"
/locus_tag="A1C_00050"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene 8972..9427
/locus_tag="A1C_00055"
/db_xref="GeneID:5644866"
CDS 8972..9427
/locus_tag="A1C_00055"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase superfamily esterase"
/protein_id="YP_001492856.1"
/db_xref="GI:157825136"
/db_xref="GeneID:5644866"
/translation="MLEINNLAFAGGGVKVIAYAWALKVLKDKDCLKNIQKVVGASGG
AIAAFSIVLGYQSEKIEDILKKIKFLDRTSKWDQVYNLVFYGWLNSEKYLEEFLGQLL
KDNGFDPDITFKQLHDSQKTNIDLYVVILISVLNFQKLYLIKMLLMRKS"
misc_feature 8987..>9358
/locus_tag="A1C_00055"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
misc_feature order(9005..9010,9014..9016,9095..9097)
/locus_tag="A1C_00055"
/note="active site"
/db_xref="CDD:132836"
misc_feature 9089..9103
/locus_tag="A1C_00055"
/note="nucleophile elbow; other site"
/db_xref="CDD:132836"
gene complement(9637..9768)
/locus_tag="A1C_00060"
/db_xref="GeneID:5644867"
CDS complement(9637..9768)
/locus_tag="A1C_00060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492857.1"
/db_xref="GI:157825137"
/db_xref="GeneID:5644867"
/translation="MGIFNIGNEYYTERFMSTTSEHSIINNHISGELKPNQINMKLK"
gene complement(10272..12848)
/locus_tag="A1C_00065"
/db_xref="GeneID:5644868"
CDS complement(10272..12848)
/locus_tag="A1C_00065"
/note="COG0542 ATPases with chaperone activity,
ATP-binding subunit"
/codon_start=1
/transl_table=11
/product="clpB protein"
/protein_id="YP_001492858.1"
/db_xref="GI:157825138"
/db_xref="GeneID:5644868"
/translation="MNIDKFTAHAKSVIARSQSIAAKNDHQQILSLHLLSSLLSEETG
IIRTIINNTGGNINLLEDQVQLALNKIPKVQVEGVGQVYSSAEALKVLEKASNIAKDS
GDSFVTIERIFEALTYDNTIAGKILTNNGINSKKLAAVILQLRKGKKADTESAENSYD
ALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIE
GLAQRIFSKDVPESLMNCRIIELDIGALIAGAKYRGEFEERLKAVLSEIKDSSGEIIL
FIDELHLLVGTGKTDGAMDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRF
QPVYVSEPTVEDTISILRGIKEKYELHHAVRISDSAIVSAATLSNRYITDRYLPDKAI
DLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKITHLTEELE
KLESKSYDMNAKWHAEKSKLQQAQKLKEELERARINLERAERDSNLAKASELKYGIIP
EIMKKIQEAESMDNKGLLKEIVSESDIASIISRITGIPIDTMLSSERERLLVMEKKLR
ESVIGQDEAIKGVSDAVRRSRAGIQDINRPLGSFLFLGQTGVGKTELTKALAGFLFDD
RNAILRIDMSEYMEKHAISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEVEKAH
HDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILINQKEDEDTYKVKDEV
MEYVKEVFKPEFLNRLDEIILFHRLNHNDIHDIVKIQLGSLKKILLQQNIILEFDESA
LNYLAEKGYDRSFGARPLKRLIQREIQNNLAKMILAGEISSGNIVKIGREKEELRIKI
ID"
misc_feature complement(10293..12833)
/locus_tag="A1C_00065"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature complement(12411..12566)
/locus_tag="A1C_00065"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature complement(11844..12305)
/locus_tag="A1C_00065"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(12207..12230)
/locus_tag="A1C_00065"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(11901..11903,12012..12014,12204..12227))
/locus_tag="A1C_00065"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(12009..12026)
/locus_tag="A1C_00065"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(11850..11852)
/locus_tag="A1C_00065"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(10674..11141)
/locus_tag="A1C_00065"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(11016..11039)
/locus_tag="A1C_00065"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(10695..10697,10821..10823,11013..11036))
/locus_tag="A1C_00065"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(10818..10835)
/locus_tag="A1C_00065"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(10314..10556)
/locus_tag="A1C_00065"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 14156..14263
/locus_tag="A1C_00080"
/db_xref="GeneID:5644728"
CDS 14156..14263
/locus_tag="A1C_00080"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492859.1"
/db_xref="GI:157825139"
/db_xref="GeneID:5644728"
/translation="MRDILNKIAENLPTEKGSDELKAHIKPRSKFERFF"
gene 14247..14372
/locus_tag="A1C_00085"
/db_xref="GeneID:5644729"
CDS 14247..14372
/locus_tag="A1C_00085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492860.1"
/db_xref="GI:157825140"
/db_xref="GeneID:5644729"
/translation="MNVFFSINKPKEDAAEIINNANLTDQEKEILKKSCNIKRKY"
gene 14481..14696
/locus_tag="A1C_00090"
/db_xref="GeneID:5644730"
CDS 14481..14696
/locus_tag="A1C_00090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492861.1"
/db_xref="GI:157825141"
/db_xref="GeneID:5644730"
/translation="MEVTAKTNKMEDKKMDAKIDAEYEKNHHKEPTMIRSDKKVVKPL
TKSVSQLKPSITPPVKSNKSHNIGMEK"
gene 14696..15421
/locus_tag="A1C_00095"
/db_xref="GeneID:5644731"
CDS 14696..15421
/locus_tag="A1C_00095"
/EC_number="1.1.1.36"
/note="catalyzes the conversion of 3-hydroxyacyl-CoA to
3-oxyacyl-CoA"
/codon_start=1
/transl_table=11
/product="acetoacetyl-CoA reductase"
/protein_id="YP_001492862.1"
/db_xref="GI:157825142"
/db_xref="GeneID:5644731"
/translation="MSEIAIVTGGTRGIGKATALKLKNNGITVVANFFSNYDAAKEME
EKYGIKTKRWNVADFEECRQAVKEIEEEFKKPVSILVNNAGITKDTMLHRMIHQDWHE
VINVNLNSCFNMSSSVIEQMRNQDYGRIVNISSINAQTGQIGQTNYSAAKAGIIGFTK
ALARETASKNITVNCIAPGYIATEMVGAVPEDVLAKIVNSIPKKRLGQPEEIARAVAF
LVDENAGFITGETISINGGHNMI"
misc_feature 14696..15418
/locus_tag="A1C_00095"
/note="acetoacetyl-CoA reductase; Provisional; Region:
PRK12824"
/db_xref="CDD:183773"
misc_feature 14702..15409
/locus_tag="A1C_00095"
/note="beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs; Region:
BKR_SDR_c; cd05333"
/db_xref="CDD:187594"
misc_feature order(14720..14722,14726..14737,14792..14797,14855..14863,
14942..14953,15011..15013,15092..15100,15137..15139,
15149..15151,15227..15232,15236..15238,15242..15250)
/locus_tag="A1C_00095"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187594"
misc_feature order(14756..14758,14768..14770,14882..14884,14963..14974,
14978..14986,14993..14998,15005..15007,15017..15022,
15029..15034,15038..15043,15050..15055,15062..15064,
15110..15133,15140..15145,15152..15157,15164..15169,
15173..15190,15194..15199,15233..15235,15296..15304,
15308..15319,15326..15328,15335..15340,15344..15349,
15359..15361,15368..15406)
/locus_tag="A1C_00095"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature order(14966..14974,14978..14980,14984..14986,14993..14998,
15005..15007,15017..15022,15029..15034,15041..15043,
15050..15055,15062..15064,15107..15133,15140..15145,
15152..15157,15164..15169,15173..15181,15185..15190)
/locus_tag="A1C_00095"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature order(15014..15016,15098..15100,15137..15139,15149..15151)
/locus_tag="A1C_00095"
/note="active site"
/db_xref="CDD:187594"
gene 15625..16116
/locus_tag="A1C_00100"
/db_xref="GeneID:5644732"
CDS 15625..16116
/locus_tag="A1C_00100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492863.1"
/db_xref="GI:157825143"
/db_xref="GeneID:5644732"
/translation="MISLSGIRRGIKAFFNKEYSEDTLTIEEQSCFFLFLAYKIFRYC
NEACLKYFGDNDKYRELIKQVLKDYHHLFLREEAMNVCIKNGTDRNKALDAIELESSD
KFFVDCFQKVFPNLNLIKVMVKLKPKPQFKHGAVFKSDAIDVLFLDIDENGVITIVGD
IKQ"
gene 16130..17452
/locus_tag="A1C_00105"
/db_xref="GeneID:5644733"
CDS 16130..17452
/locus_tag="A1C_00105"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492864.1"
/db_xref="GI:157825144"
/db_xref="GeneID:5644733"
/translation="MTSIYHILDRVPAIYKQDIEIEYENLAMQLIKSGKLRIDTDDCC
NFARFIEPALNISLMVSKEELTSPNLIHETTKLFQNVYRNAASDQKIKSIFDNLKNQI
QKLQPVKKEVTEMLARLFVQSAHPIVIRWLLLNKTEVFLTYSHNIGDMMDMVSWQRVG
GNSGMQSTNGKDVAIFVSCGGNPFAENNKEHQTYGNGWPAIARLQIIAAQELGHFADI
KRDDKGRQITRHSANFSCTKATDKVRIARKSDIINCHNLLSKLLKAGMKKQLDYETKL
KFYNANKVGGLKVYTIKFMIFIYKFRLLNYSRRNNLIFVRKFKTDKYMALMIDAMFKD
MQANLSPNAEVYKNKNPEIQEAVACIEALARVPQQVVKWGYLTTKETMHDLYKIYYNE
VIPSLITSYNAVTGENYKRYFKKPKSSFFSKINIFSNKKLILKPVREL"
misc_feature 16130..17362
/locus_tag="A1C_00105"
/note="Protein of unknown function (DUF2748); Region:
DUF2748; pfam10871"
/db_xref="CDD:151320"
gene 17683..17907
/locus_tag="A1C_00110"
/db_xref="GeneID:5644734"
CDS 17683..17907
/locus_tag="A1C_00110"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492865.1"
/db_xref="GI:157825145"
/db_xref="GeneID:5644734"
/translation="MTLPNNIAKASNIAKKLELSRTAFIRQAIIHELNNLQSQFEQDD
IIKSFNAMKKSKKYLEEMTEMTEITENLNS"
gene 17931..18044
/locus_tag="A1C_00115"
/db_xref="GeneID:5644934"
CDS 17931..18044
/locus_tag="A1C_00115"
/note="COG2337 Growth inhibitor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492866.1"
/db_xref="GI:157825146"
/db_xref="GeneID:5644934"
/translation="MVWQKEILTRGGIYLARLDPAKINEVGKIRPVIILKS"
misc_feature 17958..>18035
/locus_tag="A1C_00115"
/note="PemK-like protein; Region: PemK; cl00995"
/db_xref="CDD:207276"
gene complement(18710..18874)
/locus_tag="A1C_00120"
/db_xref="GeneID:5644935"
CDS complement(18710..18874)
/locus_tag="A1C_00120"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492867.1"
/db_xref="GI:157825147"
/db_xref="GeneID:5644935"
/translation="MSTLQAVAHRKSVINVGASLLTAHKNIELLATYNCNSRSKYTSH
QGSLKLKILF"
gene complement(18801..19340)
/locus_tag="A1C_00125"
/db_xref="GeneID:5644936"
CDS complement(18801..19340)
/locus_tag="A1C_00125"
/note="COG0187 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492868.1"
/db_xref="GI:157825148"
/db_xref="GeneID:5644936"
/translation="MISLYSQQQFINCLILQEIFSASNSHINKKDLRPVGPNSYKTAI
GKYTSKAYGFDGNVGYQFSIMDGINLMPNICIRYNTDKDNAYTETGTGVNNMYVAGKS
GNLTTGIADIKLTDPTRLSNDTQIVPGLHASIVNSFSNKQPKVKARFIWADSYCEHTT
SSSTQKVGYKCRCKFTDGS"
misc_feature complement(18891..>19340)
/locus_tag="A1C_00125"
/note="Autotransporter beta-domain; Region:
Autotransporter; smart00869"
/db_xref="CDD:197937"
gene complement(19433..19570)
/locus_tag="A1C_00130"
/db_xref="GeneID:5644937"
CDS complement(19433..19570)
/locus_tag="A1C_00130"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492869.1"
/db_xref="GI:157825149"
/db_xref="GeneID:5644937"
/translation="MPGSFVSSNQDAYKGNPSYKGTVSGGTINCDLYIGENSLVDIAY
S"
gene complement(19767..20153)
/locus_tag="A1C_00135"
/db_xref="GeneID:5644938"
CDS complement(19767..20153)
/locus_tag="A1C_00135"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492870.1"
/db_xref="GI:157825150"
/db_xref="GeneID:5644938"
/translation="MRAAQAQREANERAEQQRLQAEYQQRQANEIRVAEEYVKKSEPQ
TLAEAINNTIVVYTKNTFVAGAQKEVIRDKSVLVMQNPEKHAVELAKELINNKAELNE
VAKVANGDNIVVRKIKQEQFLLFVVN"
gene 20251..20529
/locus_tag="A1C_00140"
/db_xref="GeneID:5644939"
CDS 20251..20529
/locus_tag="A1C_00140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492871.1"
/db_xref="GI:157825151"
/db_xref="GeneID:5644939"
/translation="MLILETVYWLGLVAVQILQPNFVLVAAVDLMRQLELEVHLVVVV
TVQLELVLAALLNQLNVDCLLFVRIVLSTDVISQSQLVLLHILPLITE"
gene complement(20543..20659)
/locus_tag="A1C_00145"
/db_xref="GeneID:5644940"
CDS complement(20543..20659)
/locus_tag="A1C_00145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492872.1"
/db_xref="GI:157825152"
/db_xref="GeneID:5644940"
/translation="MNFRNGLQVQQAGPAVDQEVVQQRARVNAQTQAMQAQA"
gene complement(21109..21303)
/locus_tag="A1C_00150"
/db_xref="GeneID:5645566"
CDS complement(21109..21303)
/locus_tag="A1C_00150"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492873.1"
/db_xref="GI:157825153"
/db_xref="GeneID:5645566"
/translation="MINNIINRDANNYRITGKAVLGEELVYGNKNAKVQIDLLESLND
VKLIITGNDISAIDSIVMSG"
gene complement(21471..21629)
/locus_tag="A1C_00155"
/db_xref="GeneID:5645567"
CDS complement(21471..21629)
/locus_tag="A1C_00155"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca10"
/protein_id="YP_001492874.1"
/db_xref="GI:157825154"
/db_xref="GeneID:5645567"
/translation="MASFESVVVAVPHENNTYLHNVMDPIRGGDMSQDWRSNNGAQHQ
PQNWDYLF"
gene complement(22115..22783)
/locus_tag="A1C_00160"
/db_xref="GeneID:5645568"
CDS complement(22115..22783)
/locus_tag="A1C_00160"
/note="COG1286 Uncharacterized membrane protein, required
for colicin V production"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492875.1"
/db_xref="GI:157825155"
/db_xref="GeneID:5645568"
/translation="MITFFDITIFSIITLFSFFGLYQGIIGFSTRILGFITYIMLGYF
LYPYISELIGKYMENEVIRIIIACIISYLVSLILCVFIVYKFLAIISFMRNGFIDRFL
GSLAGFAVGTTISLVLFFITMVFTSENYFKSKSLKDFVVSSKQSKYGGVLKVSVTTDY
LDELSKNIIVIIPNETLKSIKIFENKDLNNFKNSIKKSNDSNGDEDIFSQELQDEFSN
IDDE"
misc_feature complement(22187..22726)
/locus_tag="A1C_00160"
/note="Uncharacterized membrane protein, required for
colicin V production [General function prediction only];
Region: CvpA; COG1286"
/db_xref="CDD:31477"
misc_feature complement(22385..22726)
/locus_tag="A1C_00160"
/note="Colicin V production protein; Region: Colicin_V;
pfam02674"
/db_xref="CDD:202343"
gene 23018..23587
/locus_tag="A1C_00165"
/db_xref="GeneID:5645569"
CDS 23018..23587
/locus_tag="A1C_00165"
/note="COG1678 Putative transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492876.1"
/db_xref="GI:157825156"
/db_xref="GeneID:5645569"
/translation="MGDKIFHNLSSKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGL
IFNRLVNHIDLKSFFKIKNDDITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLLLDFQ
NDLAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELERNLWLVMDCNKEFIF
ADNPEDKWHSALKHLGIDEIYFSAQIGNA"
misc_feature 23018..23584
/locus_tag="A1C_00165"
/note="Putative transcriptional regulator [Transcription];
Region: COG1678"
/db_xref="CDD:31864"
gene complement(23598..24173)
/locus_tag="A1C_00170"
/db_xref="GeneID:5645570"
CDS complement(23598..24173)
/locus_tag="A1C_00170"
/note="COG1999 Uncharacterized protein SCO1/SenC/PrrC,
involved in biogenesis of respiratory and photosynthetic
systems"
/codon_start=1
/transl_table=11
/product="Sco2 protein precursor"
/protein_id="YP_001492877.1"
/db_xref="GI:157825157"
/db_xref="GeneID:5645570"
/translation="MYIIKIFIALSMITCILFLCLFYSSLTPSKFQIGAKTSNIDDSP
KIKFTLIDQVGKKFDSTHLHGHLSFIYFGTTYSLHDNQALKRVEDIIKILKQESISVQ
VVFITLDPEHDTSEVLKKYLEKIDGNFIGLTGKVADIKQLADQFKVFYASKILDVETN
EYELQHSNFVYLISSHGKFLKHYCLGLPKNG"
misc_feature complement(23604..24167)
/locus_tag="A1C_00170"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature complement(23625..24032)
/locus_tag="A1C_00170"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature complement(order(23676..23678,23934..23936,23943..23945))
/locus_tag="A1C_00170"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene 24487..24720
/locus_tag="A1C_00175"
/db_xref="GeneID:5645571"
CDS 24487..24720
/locus_tag="A1C_00175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492878.1"
/db_xref="GI:157825158"
/db_xref="GeneID:5645571"
/translation="MAIVDSTIAEKHLLQILNDNHNETQPTQTLLNQNSFEITESIEH
NKAEKQYNDVEKRRSKRGIRSRNGQFYIRYARG"
gene 24707..24823
/locus_tag="A1C_00180"
/db_xref="GeneID:5645572"
CDS 24707..24823
/locus_tag="A1C_00180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492879.1"
/db_xref="GI:157825159"
/db_xref="GeneID:5645572"
/translation="MLEDKNFIDLINKDSEKYESIIDMSNKAIIILGREKAD"
gene 25742..26197
/locus_tag="A1C_00185"
/db_xref="GeneID:5644671"
CDS 25742..26197
/locus_tag="A1C_00185"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492880.1"
/db_xref="GI:157825160"
/db_xref="GeneID:5644671"
/translation="MLPDQELHIYNLLEKLLKESHKSIIDCYKNENLYKHQLAEIYCQ
QAQSYTANGSTKLSEGSIELYENASNLGSEEAHITLGTIEFKSGNYVKALEYFKNTTR
ISYAQEDFSKSLHLKESELKKNIQQKNSQDTAKLTSEIIELYSKQVDSL"
misc_feature <25841..>26038
/locus_tag="A1C_00185"
/note="tetratricopeptide repeat protein; Provisional;
Region: PRK11788"
/db_xref="CDD:183314"
gene 26340..26573
/locus_tag="A1C_00190"
/db_xref="GeneID:5644672"
CDS 26340..26573
/locus_tag="A1C_00190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492881.1"
/db_xref="GI:157825161"
/db_xref="GeneID:5644672"
/translation="MISAPCSQLKFIQEAEKYKNLAEKFKEEKLETYYTHITTSQLHD
SYFKESLLKCDDLKTLILHLDHIMIIMKILAIC"
gene 26701..27369
/locus_tag="A1C_00195"
/db_xref="GeneID:5644673"
CDS 26701..27369
/locus_tag="A1C_00195"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492882.1"
/db_xref="GI:157825162"
/db_xref="GeneID:5644673"
/translation="MTNNQFSEDTKKIADQIKDALMGISDDLVLESKEVEEIFEELSQ
NEEFEYEIERMLAILNEHAMDLTQLQSRIILLIRKYLGKTKNLKLKMLKMDEKLINKN
VAEVSNYLMHQHSKIVRDANKNLANPKDKLQGLTKQARIDLKRLIKSFAVYQVYMFMN
PKRIAGETKLMNFAYNMIRGGMKLAKKYEGGKEKDIKSYSPRLIKKLEKAHAGFKKSG
DISI"
gene 27564..27875
/locus_tag="A1C_00200"
/db_xref="GeneID:5644674"
CDS 27564..27875
/locus_tag="A1C_00200"
/note="COG1539 Dihydroneopterin aldolase"
/codon_start=1
/transl_table=11
/product="folate synthesis bifunctional protein"
/protein_id="YP_001492883.1"
/db_xref="GI:157825163"
/db_xref="GeneID:5644674"
/translation="MDNINDTVCYAEIVRLVQKLSQENHFNLIDIEHLATQIYDIIYQ
NLYIYYHILKNLKNLGCAILVGHPRKSYISAFYNSKASERDLETITISTSLTEHGADY
L"
misc_feature <27567..>27689
/locus_tag="A1C_00200"
/note="Dihydroneopterin aldolase; Region: FolB;
smart00905"
/db_xref="CDD:197973"
misc_feature <27678..27872
/locus_tag="A1C_00200"
/note="Dihydropteroate synthase and related enzymes
[Coenzyme metabolism]; Region: FolP; COG0294"
/db_xref="CDD:30642"
misc_feature <27690..27872
/locus_tag="A1C_00200"
/note="Pterin binding enzymes. This family includes
dihydropteroate synthase (DHPS) and cobalamin-dependent
methyltransferases such as methyltetrahydrofolate,
corrinoid iron-sulfur protein methyltransferase (MeTr) and
methionine synthase (MetH). DHPS, a...; Region:
Pterin_binding; cl00219"
/db_xref="CDD:206909"
misc_feature order(27699..27701,27711..27716,27831..27833,27843..27845,
27855..27857)
/locus_tag="A1C_00200"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29544"
misc_feature 27765..27773
/locus_tag="A1C_00200"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29544"
gene 28224..28364
/locus_tag="A1C_00205"
/db_xref="GeneID:5644675"
CDS 28224..28364
/locus_tag="A1C_00205"
/note="COG0262 Dihydrofolate reductase"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase"
/protein_id="YP_001492884.1"
/db_xref="GI:157825164"
/db_xref="GeneID:5644675"
/translation="MTDKKIFIVGGAEIAILCLEQNLIDEFLLTKINKNYDGDTFFPL
NL"
misc_feature <28227..>28352
/locus_tag="A1C_00205"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cl00161"
/db_xref="CDD:206871"
gene 29260..30342
/gene="recF"
/locus_tag="A1C_00220"
/db_xref="GeneID:5644676"
CDS 29260..30342
/gene="recF"
/locus_tag="A1C_00220"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_001492885.1"
/db_xref="GI:157825165"
/db_xref="GeneID:5644676"
/translation="MKNIFLHSLSLANYRNFKNLELKTDNTPIILIGENGSGKTNILE
AISLFYPGRGLRSAKLDDICKASEDYCIVKALLQSQLGLAEFSTHIKRNSNRRITEYN
ESKIANNELSKFTSMVWLTPQMEGIFTSGSSDRRKFLDRIVYNFYPKHAELVSKYEYY
MHERNKILAEDIRDDNWLKIIEGKMADMSSHIANNRLKTLEFMQQAIDELENEFPKAD
LSIDGIVEQRILDGEENLVNFITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNIL
AKFCSTGEQKAILIAIILAEMNYVIKLTKIAPILLLDEVFVHLDDTRRQYLIEFFTTL
SMQLWVTDTNLEGIENFASKAQLIKL"
misc_feature 29272..30339
/gene="recF"
/locus_tag="A1C_00220"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 29275..>29832
/gene="recF"
/locus_tag="A1C_00220"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 29356..29379
/gene="recF"
/locus_tag="A1C_00220"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(29365..29370,29374..29382,29623..29625)
/gene="recF"
/locus_tag="A1C_00220"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 29614..29625
/gene="recF"
/locus_tag="A1C_00220"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <30037..30333
/gene="recF"
/locus_tag="A1C_00220"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 30097..30126
/gene="recF"
/locus_tag="A1C_00220"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 30184..30201
/gene="recF"
/locus_tag="A1C_00220"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 30208..30219
/gene="recF"
/locus_tag="A1C_00220"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 30277..30297
/gene="recF"
/locus_tag="A1C_00220"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 30588..32192
/locus_tag="A1C_00225"
/db_xref="GeneID:5644677"
CDS 30588..32192
/locus_tag="A1C_00225"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492886.1"
/db_xref="GI:157825166"
/db_xref="GeneID:5644677"
/translation="MTKQANKISYDEVPYPPFTFSYTSPPYLRTIGKLFRLNPSPLET
AKVLEIGCGIGVNLFNFAETYPKSQSLGVDLSKTQIELGQKIISDLKIKNIELKALSI
LDLDESYGKFDYIVCHGVYSWVPQEVQDKILEVCNTLLNPNGIAFVSYNTLPGWNMQR
TIREMMMFHSELFNTSHDKLQQARLLLKFINDSLESSATPYANFLRDEAKLLSEYTDS
YVLHEYLGEINTGIYFHQFIAKAQKNHLNYLGDTSITAMFIGNLPTKAAEKLQAVNDI
VRTEQYMDFITNRKFRSTLLCHQNIHINRKIEFNNLKEFYTTMNIRPVTPEKEVDLTN
EQENISFYYENLPEPFISTTSSIVKAILYVYTENISNPISLEQVAKEAFKKLGKYQLQ
DFLAALEQHFITFIFQGYLKIFETKPHAIATITAKPKTSEFARYQAKQAHSNNSTHVL
SVTNRINDMIGIPIHEKYILEMLDGTHNIDDIRKVVLEKINSKLLTARDDKGQEVTDP
KLLKEFVDYIVTVSLEKFRMNYLLVG"
misc_feature 30714..>31037
/locus_tag="A1C_00225"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 30723..31037
/locus_tag="A1C_00225"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(30735..30755,30807..30812,30885..30893,30939..30941)
/locus_tag="A1C_00225"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature 31338..32180
/locus_tag="A1C_00225"
/note="Predicted regulatory domain of a methyltransferase
[General function prediction only]; Region: COG4797"
/db_xref="CDD:34406"
gene 32199..32345
/locus_tag="A1C_00230"
/db_xref="GeneID:5645537"
CDS 32199..32345
/locus_tag="A1C_00230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492887.1"
/db_xref="GI:157825167"
/db_xref="GeneID:5645537"
/translation="MTLSSLRATKRSMAIQKKYTSSNEEPLYEVQLEKEQGVFREAEH
ILNT"
gene complement(32402..32935)
/locus_tag="A1C_00235"
/db_xref="GeneID:5645538"
CDS complement(32402..32935)
/locus_tag="A1C_00235"
/note="COG1329 Transcriptional regulators, similar to M.
xanthus CarD"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_001492888.1"
/db_xref="GI:157825168"
/db_xref="GeneID:5645538"
/translation="MANTTQSENKTEQKSGFKIGQRIVYPAHGVGEITNIEYNTIAGT
EIKVYVISFSQDKMTLKVPVSRAAVVGLRAVASRKDLDLIYSTLQGKPKQGNRMWSRR
AQEYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHP
TEAINKLVEVLREKLVA"
misc_feature complement(32405..32899)
/locus_tag="A1C_00235"
/note="Transcriptional regulators, similar to M. xanthus
CarD [Transcription]; Region: COG1329"
/db_xref="CDD:31520"
gene 33114..34052
/locus_tag="A1C_00240"
/db_xref="GeneID:5645539"
CDS 33114..34052
/locus_tag="A1C_00240"
/note="COG1651 Protein-disulfide isomerase"
/codon_start=1
/transl_table=11
/product="protein-disulfide isomerase"
/protein_id="YP_001492889.1"
/db_xref="GI:157825169"
/db_xref="GeneID:5645539"
/translation="MPIFLLFLSSCSEEKTQHKHQEEKQMIEQENLQNNDTSQEMNQG
AVNSENAAESIVPANDNNQTDEVSTPASQAQKNPEIKPVKVTFEVDVNDMVLGNKKSN
VIDEVSTPASQAQKNPEIKPVKVTFEVDVNDMVLGNKKSNVIVVEYFSPTCPHCAYYH
QTIFPELKKKYIDTNKIAYVVREFIATKQDLDAAILARCKGDINSFVQFHNIILQQQD
KWAYSNKYRELLTDIGQLGGVPPEEYKQCLNSDKITETLIANTNFVAKAPKFIGTPSF
FVNGVQTGNYSIDSISTAVDKALEEQKEKAKNEMSL"
misc_feature <33435..34010
/locus_tag="A1C_00240"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature 33501..34004
/locus_tag="A1C_00240"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
gene 34211..34468
/locus_tag="A1C_00245"
/db_xref="GeneID:5645540"
CDS 34211..34468
/locus_tag="A1C_00245"
/note="COG5336 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492890.1"
/db_xref="GI:157825170"
/db_xref="GeneID:5645540"
/translation="MNTEKLKDIKARIKDLKTSKISNSKVQQEISPFTISVDLVSGTM
VGVVIGIFTDKFFNSKPLFLIVFTIIGMIAGFNIIIQKIRK"
misc_feature 34211..>34414
/locus_tag="A1C_00245"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5336"
/db_xref="CDD:34913"
gene 34465..35193
/locus_tag="A1C_00250"
/db_xref="GeneID:5645541"
CDS 34465..35193
/locus_tag="A1C_00250"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit A is part of the
membrane proton channel F0"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit A"
/protein_id="YP_001492891.1"
/db_xref="GI:157825171"
/db_xref="GeneID:5645541"
/translation="MTHSPLAQFDIKKLIDIKMFGFDISFTNSSIYMLLASILALTYF
YLAFYNRKLVPSRLQVSAEIVYNLVADMLNQNIGVKGHKFIPLVFSLFIFVLFSNLLG
MTPYSFTATSHIIVTFTLAIIVFLTVTIVGFVKHGLRFLTLFLPYGTPLWLAPLMIVI
ELFTYLAKPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFLPIPIIVILIGFEIF
VAILQAYIFTILSCMYLNDAINLH"
misc_feature 34477..35181
/locus_tag="A1C_00250"
/note="ATP synthase subunit 6 (eukaryotes),also subunit A
(prokaryotes); Region: ATP_synt_6_or_A; TIGR01131"
/db_xref="CDD:162216"
gene 35388..35612
/locus_tag="A1C_00255"
/db_xref="GeneID:5645542"
CDS 35388..35612
/locus_tag="A1C_00255"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit C is part of the
membrane proton channel F0"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit C"
/protein_id="YP_001492892.1"
/db_xref="GI:157825172"
/db_xref="GeneID:5645542"
/translation="MDMVSLKFIGIGLMAIGIYGAALGVSNIFSSLLSSIARNPSAAE
NLQRMALIGAGLAEAMGLFSFVIAMLLIFS"
misc_feature 35388..35609
/locus_tag="A1C_00255"
/note="F0F1 ATP synthase subunit C; Validated; Region:
PRK07558"
/db_xref="CDD:181027"
gene 35630..36103
/locus_tag="A1C_00260"
/db_xref="GeneID:5645543"
CDS 35630..36103
/locus_tag="A1C_00260"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit B' is part of the
membrane proton channel."
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B'"
/protein_id="YP_001492893.1"
/db_xref="GI:157825173"
/db_xref="GeneID:5645543"
/translation="MPQFDVATYYSQIFWLIATFGLLYIFVYKFITPKAEEIFNNRQT
NIQCNITQADMLTQEVEKLNKYYNVEIDKTNTEIDRLKKEKIDSLESEFLITRKNLEQ
DLKNSINQNIEGINLAAQQFRTNKSEAIIKLAVNIIEKITGTKADMNLLQSIKVK"
misc_feature 35630..36094
/locus_tag="A1C_00260"
/note="F0F1 ATP synthase subunit B'; Validated; Region:
PRK06569"
/db_xref="CDD:180627"
misc_feature 35666..36088
/locus_tag="A1C_00260"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
gene 36103..36597
/locus_tag="A1C_00265"
/db_xref="GeneID:5644780"
CDS 36103..36597
/locus_tag="A1C_00265"
/EC_number="3.6.3.14"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. Subunit B is part of the
membrane proton channel."
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B"
/protein_id="YP_001492894.1"
/db_xref="GI:157825174"
/db_xref="GeneID:5644780"
/translation="MNFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKV
LKSEKLKEDAALLFEQTNAQIQKLEALRSQMIEESNEVTKKLIQEKTKEIEEFLEHKR
SDAIQLIQNQKSTASKELQDEFCDEVITLVSKYFQSARLSESNIAKNLMDKSDSSCDD
SKTT"
misc_feature 36103..36555
/locus_tag="A1C_00265"
/note="F0F1 ATP synthase subunit B; Validated; Region:
PRK06568"
/db_xref="CDD:168615"
misc_feature 36124..36543
/locus_tag="A1C_00265"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
gene complement(36698..36808)
/locus_tag="A1C_00270"
/db_xref="GeneID:5644781"
CDS complement(36698..36808)
/locus_tag="A1C_00270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492895.1"
/db_xref="GI:157825175"
/db_xref="GeneID:5644781"
/translation="MLYFEAICLIAIYNTNKNCTCVKEFAIFYHALIKKK"
gene complement(37122..37631)
/locus_tag="A1C_00275"
/db_xref="GeneID:5644782"
CDS complement(37122..37631)
/locus_tag="A1C_00275"
/note="COG0459 Chaperonin GroEL (HSP60 family)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492896.1"
/db_xref="GI:157825176"
/db_xref="GeneID:5644782"
/translation="MLQKVWLKTQSLVYLDSDFINIDFFKELFLIDEEKLQESIKRLE
PLPIVNVICQNGQNNLQLHRLVQISIKNYISDNLDHIINKKEIHAKLIEALDDLLPQL
TNIPNEDLNSAKILYPHVIKILNYNIEIDKFRKANLYQKIGCYQDYILYKFEESLKYH
KETFKIYKV"
gene complement(37717..37791)
/locus_tag="A1C_t06887"
/db_xref="GeneID:5644783"
tRNA complement(37717..37791)
/locus_tag="A1C_t06887"
/product="tRNA-Glu"
/db_xref="GeneID:5644783"
gene complement(38026..42537)
/locus_tag="A1C_00280"
/db_xref="GeneID:5644784"
CDS complement(38026..42537)
/locus_tag="A1C_00280"
/codon_start=1
/transl_table=11
/product="cell surface antigen"
/protein_id="YP_001492897.1"
/db_xref="GI:157825177"
/db_xref="GeneID:5644784"
/translation="MNKLTEQNLLKKSRFLKYSMLASISVGAVMAMPIEGMAMSKEAF
RTELSRRLSLNKDTTSTSPQIGTVIVPEPEVNTYTASEIREMAISKQSKTFNPLKDIP
IDDHYRVVARSKSDVGKARKARPISRRKTLGDAEKVVQNQDDYTHALTEQTPKKPEMM
ITASSPTVSPASNDFVTAPNTPNTSLASPEHYTTALSTPSSTPTTPQPTSDSLASPEH
YTTELSTPSSTPTTPQPTSDSKPNDNLESTPPNTNSKAVRRLSFSSSESQQTVQPSKS
TVSPIPTAHPLPITKSSTEIAAGMVSNILRVNEILGIKLAEVQSTIKNTKGKKNKKPL
QRLQKQIFLSQKKTKALKLEAAAIGIKIKELDEENKSLASWNKKKGGVKDKYELDKDS
AKIKENNKKIDDLQQKLTNKNDEANSLSREVGGVVLTKLQGKATVTEMPLAGPFLNQQ
QQLELLTQQQKVNAARQAVVDKRRAEANEVKRNSAEYKDPVSEREEVQLERNQRHIAV
EKTKKQQQVVDKQRTEREKKRKEENYQKEKARDIVEIREDIAKKMQQISNANTTSNRL
QELELTVGAIEDKNQKKEAQKQLSKIKKQEKAIKAAADEAQKILNDAKKAASRTKLKK
LQEQIGNHVAMVTNDKIEESIKKLEGLVLTSSTTSSTATISKQLLTAKSTMQLSHELQ
RTLPEDGYGYLMPIKVQQQIQANRSNEGSNPNSTTYLDLYPEEEGLKSIDLALGILPT
SASVIPQYVEELNNLASFHSLNQIQQEKSLIVTNLLLSEASALSDDEFRAVANEVHPK
IRPILTYNRRKEKEAKLVEAETAHNQVIQKAIKTPNSTKAKEAVENAARLFGQHNNSF
KLMQDIRDEHRRKYYKTPKKVTDSINSLDLVVLEESQQLKEPRSNSLEALDLAGSVSS
PDYKAKELELDTLNHDDPKFKKLMLEVFEMSKEKILLEGEIKHLDTESNKGSVYTYIK
VLNNKIQTMEELLGSSSRSEELTHIKEAMAYISNSIQDVEELDERMLLAINARLQEHD
KKISSLLLEKYTSEEAEDIFAQSLLQEMLVSDCESESTLPAGHEEKEDTEVTESGIQK
AGDKELLALHVSSNECALALDDDREKESLELGGGSEDEERYDSGFEEEEEIIEQLSDS
DGGNIKITEVDMAIPLEQKAKQEMQTQISENAPTLNQAKVVNTIVNNMIRNRLDTSMN
IANNIVAVGAGDEEESRITRGLWMRGMYGTNNHGRVENMNGYRGTNKGATIGFDVEID
NNILGIAYSNVHSVFKFKNSKDNDKELIDSHVISIYGQKELPRNFALQALVSASKNFI
KDKTTYSYGDTKIGSNVRHRNHSYNAEALLNYNYLLQNKCVITPNIGLRYGKSRDGVY
NETGINVQEIALTMKENNILSGIVGTKVKVPLKDVLKFNNLGITFQGAVEHTFKEKTQ
RINRVVKIFDHKFKQDYLIPKQPKTSYNLGTGIIGSIKNTTISLDYNYYLNKHYRSHQ
GSVKLKVNL"
misc_feature complement(38053..38868)
/locus_tag="A1C_00280"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 43287..43862
/locus_tag="A1C_00285"
/db_xref="GeneID:5644785"
CDS 43287..43862
/locus_tag="A1C_00285"
/note="COG0658 Predicted membrane metal-binding protein"
/codon_start=1
/transl_table=11
/product="ComEC/Rec2 family protein"
/protein_id="YP_001492898.1"
/db_xref="GI:157825178"
/db_xref="GeneID:5644785"
/translation="MSQLQIIERNDTNFDSFIYRVRSYIYNNLIKKLGNDKGNFAAAI
LLGNTKGLNMQITQDIRQSGISHVLCVSGLHLSLVVMIIFLITRFLLNLSNYFAYHFN
IKLISAYCSLIGSFGYLELSGMQIAATRAFITAAIFIYCIIIERSCFPLRSLTIAAFI
ILSLNPEYIFHPSFQLSFIAVLSPITGYEFY"
misc_feature 43416..>43835
/locus_tag="A1C_00285"
/note="Competence protein; Region: Competence; pfam03772"
/db_xref="CDD:190745"
gene 44125..44382
/locus_tag="A1C_00290"
/db_xref="GeneID:5645723"
CDS 44125..44382
/locus_tag="A1C_00290"
/codon_start=1
/transl_table=11
/product="ComEC/Rec2-like protein"
/protein_id="YP_001492899.1"
/db_xref="GI:157825179"
/db_xref="GeneID:5645723"
/translation="MVFRLYYQFQHTTFLFVFFDLYMENLVAFACSCNYDNIFYIYVL
LSKAKLIFDTSNMAVGIKDKDEKLVIYADKIPTFNSTYWAT"
gene 44786..45943
/locus_tag="A1C_00295"
/db_xref="GeneID:5645724"
CDS 44786..45943
/locus_tag="A1C_00295"
/note="COG0617 tRNA nucleotidyltransferase/poly(A)
polymerase"
/codon_start=1
/transl_table=11
/product="Poly(A) polymerase"
/protein_id="YP_001492900.1"
/db_xref="GI:157825180"
/db_xref="GeneID:5645724"
/translation="MQVIHTTLKIPSKGYKKILSLLNKKGQARLIGGCVRDALLEKSS
YDIDIATNLIPDEVTNILLKANIKTIQTGLKFGTITAILNNEQFEITTLRKDIECNGR
HAKVVFTDDFAEDAARRDFTINALSYCPFKNEIYDYFEGFKDLRQEKVVFIGEALDRI
KEDYLRILRFFRFSSYYTNQLDDGIFKACKALKDGLKTLSRERIKSEMDKIIVSKRAE
QILKAMFEIGILELIFSIQNYEIKFFEQSKALELATNYALLLYNLKNINSKLLLDWKF
TKQEVIQILSIINFLNNAECDIKKIWFEKKNYKEYLLAASIIGKLNHSQVKEFIHKYD
PLLRPKFQVNGNDLLNMNIEKKEIGAKLEYLKNFWIDQDFKPSKSELLEKL"
misc_feature 44804..45940
/locus_tag="A1C_00295"
/note="tRNA nucleotidyltransferase/poly(A) polymerase
[Translation, ribosomal structure and biogenesis]; Region:
PcnB; COG0617"
/db_xref="CDD:30962"
misc_feature 44819..45226
/locus_tag="A1C_00295"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(44879..44884,44891..44896,44921..44923,44927..44929,
45011..45013,45050..45052,45065..45067,45137..45148,
45155..45157)
/locus_tag="A1C_00295"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(44879..44884,44891..44893,44921..44923,44927..44929,
45137..45145,45155..45157)
/locus_tag="A1C_00295"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(44921..44923,44927..44929,45050..45052)
/locus_tag="A1C_00295"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 45323..45487
/locus_tag="A1C_00295"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
gene 46006..46845
/locus_tag="A1C_00300"
/db_xref="GeneID:5645725"
CDS 46006..46845
/locus_tag="A1C_00300"
/note="COG0803 ABC-type metal ion transport system,
periplasmic component/surface adhesin"
/codon_start=1
/transl_table=11
/product="zinc/manganese ABC transporter substrate binding
protein"
/protein_id="YP_001492901.1"
/db_xref="GI:157825181"
/db_xref="GeneID:5645725"
/translation="MDTVVKPRYNTGKILTLLFLTFFSLTSYAKPKIVVSITPIASIV
SILVKDKADIESLAVNNDCPHHHNIKPSDLAKVKNADIAIYINEQFDSFAEKLIDNHS
KNIIKISNIKSLTTIKDNWHIWLDLNNTAILLQEFARIFSKNFPELQEDINNNLSAAL
KELSKLQEIRNNEFATIKDVVLLSDSSEYFFLNTNIKTAKLYSKSQKSLRYISKLEDL
IKESNNKCLILSNEQNSRLYDKLNAKIIILNSENWNVQNIHSNTFQNQYLQMINQVKK
CIR"
misc_feature 46090..46839
/locus_tag="A1C_00300"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:31146"
misc_feature 46102..46755
/locus_tag="A1C_00300"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature order(46288..46293,46300..46302,46420..46422)
/locus_tag="A1C_00300"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene 46833..47348
/locus_tag="A1C_00305"
/db_xref="GeneID:5645726"
CDS 46833..47348
/locus_tag="A1C_00305"
/note="COG0802 Predicted ATPase or kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492902.1"
/db_xref="GI:157825182"
/db_xref="GeneID:5645726"
/translation="MHTLNNEAETKKLAKLFAQSLKPNDIVLLNGNLGAGKTFFCREI
IKHFCGETTSIISPTFNLLQTYKASNFTIYHYDLYRLKSPEEIYELGLEEALNCNLIL
IEWSEIIKHLLSQPLIEVNLEVLDENKRLCSIITNSSEYSSIDFLQASLLFGTKLDIQ
LDKSHTRKVKL"
misc_feature 46860..47228
/locus_tag="A1C_00305"
/note="Uncharacterized P-loop hydrolase UPF0079; Region:
UPF0079; pfam02367"
/db_xref="CDD:202221"
gene complement(47353..47550)
/locus_tag="A1C_00310"
/db_xref="GeneID:5645727"
CDS complement(47353..47550)
/locus_tag="A1C_00310"
/codon_start=1
/transl_table=11
/product="antitoxin of toxin-antitoxin system StbD"
/protein_id="YP_001492903.1"
/db_xref="GI:157825183"
/db_xref="GeneID:5645727"
/translation="MTQAVKSQVIINKYGKLLISPEEYEQFNQLEDMYWKMQAKNESK
SGFLSEKESKDFLNNILDCVK"
gene complement(47579..48535)
/locus_tag="A1C_00315"
/db_xref="GeneID:5645728"
CDS complement(47579..48535)
/locus_tag="A1C_00315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492904.1"
/db_xref="GI:157825184"
/db_xref="GeneID:5645728"
/translation="MKRILSFIFIILFFNLSYADEKAAIITDYKPVFLPVISENKKIK
IAIRSYLNNEKLYFVLVDPHSFKTELTLQELVILPTNKTEKENLLKKLNETPYIKALN
KYNSAPYMLQNYGATSSMYKVKGQFLTIDMCPSSKSFEEDFFKKIVALSSKLNKPIPI
AICVSGLWINNHTEEFLWLLKQQENGYLQITWVNHSFSHPHFKDKPLEDNFLLSNKDD
FENEVLEVGKILVRYNIAPSPFFRFPGLVSDQTLIEKLKDLGFIPLGSNAWLAKGEKV
QDGSFILVHGNSNEKAGIDLIMPMLPELKLLPIANGFLLHAN"
misc_feature complement(47618..48166)
/locus_tag="A1C_00315"
/note="Putative catalytic NodB homology domain of
uncharacterized protein RC0012 from Rickettsia conorii and
its bacterial homologs; Region: CE4_RC0012_like; cd10963"
/db_xref="CDD:200585"
misc_feature complement(order(47681..47683,47687..47689,47729..47734,
47750..47752,47801..47806,47810..47812,47936..47941,
47948..47953,48140..48151))
/locus_tag="A1C_00315"
/note="NodB motif; other site"
/db_xref="CDD:200585"
misc_feature complement(order(47681..47683,47687..47689,47750..47752,
47798..47806,47939..47941,47951..47953,48140..48145))
/locus_tag="A1C_00315"
/note="putative active site [active]"
/db_xref="CDD:200585"
gene complement(48532..49515)
/locus_tag="A1C_00320"
/db_xref="GeneID:5645729"
CDS complement(48532..49515)
/locus_tag="A1C_00320"
/note="COG0042 tRNA-dihydrouridine synthase"
/codon_start=1
/transl_table=11
/product="nifR3 family TIM-barrel protein"
/protein_id="YP_001492905.1"
/db_xref="GI:157825185"
/db_xref="GeneID:5645729"
/translation="MIKIGNIELSSNVMLAPMSDITDLEFRKLVKRFGAGLVVSEMIA
SRAMVVKSRQSMQKCAIMHDDPTSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGC
PAKKVVGGYAGAALMSDEQLASKIFEATVKAVKIPITVKMRMGWDDNTKNAPTLSKIA
ENSGIQMVTVHGRTRCQFYSGNADWNFIRSVKEAVKIPVIANGDITNFAKAKEALQKS
GADGIMVGRGAYGKPWIISQIDHYLKTGERKPDPSIAEQLDIVTEHCEAILDYYGKSV
GIPIARKHISWYSSGLPSSAEFRGAVNLMHDPAELKEKIAEFYTSIMDTNK"
misc_feature complement(48547..49506)
/locus_tag="A1C_00320"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature complement(48784..49482)
/locus_tag="A1C_00320"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature complement(order(48835..48840,48904..48906,48910..48912,
49003..49005,49093..49095,49219..49221,49300..49302,
49390..49392,49462..49470))
/locus_tag="A1C_00320"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature complement(order(48835..48837,48904..48909,48994..48999,
49003..49008,49087..49089,49093..49095,49207..49212,
49300..49302))
/locus_tag="A1C_00320"
/note="active site"
/db_xref="CDD:73368"
misc_feature complement(order(48997..48999,49003..49005,49087..49089,
49210..49212))
/locus_tag="A1C_00320"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature complement(order(48904..48909,48994..48996,49006..49008,
49093..49095,49207..49209))
/locus_tag="A1C_00320"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene 50002..50077
/locus_tag="A1C_t06889"
/db_xref="GeneID:5645313"
tRNA 50002..50077
/locus_tag="A1C_t06889"
/product="tRNA-Phe"
/db_xref="GeneID:5645313"
gene complement(50123..50449)
/locus_tag="A1C_00325"
/db_xref="GeneID:5645314"
CDS complement(50123..50449)
/locus_tag="A1C_00325"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001492906.1"
/db_xref="GI:157825186"
/db_xref="GeneID:5645314"
/translation="MQEFTYLRKQYWGNHFWARGYMAVSLGNITDEMIQQYIDEQEGA
TINDDLFLIDYTSIYNISAYSRELFSLSYNTSSDSISKNSFIPSKHNVLLLNIINIIK
ISLKIQ"
misc_feature complement(50327..>50446)
/locus_tag="A1C_00325"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene 51227..51445
/locus_tag="A1C_00330"
/db_xref="GeneID:5645315"
CDS 51227..51445
/locus_tag="A1C_00330"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001492907.1"
/db_xref="GI:157825187"
/db_xref="GeneID:5645315"
/translation="MQEFAYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGE
TINDDLFLIDYTSIYNISAYSRELCAPS"
misc_feature <51230..51349
/locus_tag="A1C_00330"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(51835..51969)
/gene="rpsF"
/locus_tag="A1C_00335"
/db_xref="GeneID:5645316"
CDS complement(51835..51969)
/gene="rpsF"
/locus_tag="A1C_00335"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001492908.1"
/db_xref="GI:157825188"
/db_xref="GeneID:5645316"
/translation="MIISAELQENPLITKNNVRKINKFSKTPIIFIITKQAIKFNKNR
"
gene 52263..52691
/gene="rpsF"
/locus_tag="A1C_00340"
/db_xref="GeneID:5645317"
CDS 52263..52691
/gene="rpsF"
/locus_tag="A1C_00340"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001492909.1"
/db_xref="GI:157825189"
/db_xref="GeneID:5645317"
/translation="MVLVAISSFILKFVCWRFLYIMSFYESVFIIRQDVSLNDIDKIV
DDFVKIIKDNNGTIIKKEYWGIRTLAYKIGNNKKGHYYFLGIDVTCNVKEELERKMKL
NENIIRFLTIKTDSISSEPSPILKNQSTENTPVIDVTINN"
misc_feature 52326..52649
/gene="rpsF"
/locus_tag="A1C_00340"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 52716..53003
/gene="rpsR"
/locus_tag="A1C_00345"
/db_xref="GeneID:5645318"
CDS 52716..53003
/gene="rpsR"
/locus_tag="A1C_00345"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_001492910.1"
/db_xref="GI:157825190"
/db_xref="GeneID:5645318"
/translation="MLKSNNASETVTHKVGDKTAKKVFFRRRKGCPLSVHNAPVIDYK
NPELLIKFVSEGGRMLPSRITNVCAKKQRKLNNAIKIARILALLPFVFQAK"
misc_feature 52761..52988
/gene="rpsR"
/locus_tag="A1C_00345"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 53015..53530
/gene="rplI"
/locus_tag="A1C_00350"
/db_xref="GeneID:5644920"
CDS 53015..53530
/gene="rplI"
/locus_tag="A1C_00350"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_001492911.1"
/db_xref="GI:157825191"
/db_xref="GeneID:5644920"
/translation="MEIILIKPVRKLGKIGDMLKVADGFGRNYLLPQKLAIRATEPNK
ELIVKQKHEFEAKDKQIREEVEKINALIKDQKLVFIRQASDDGKLFGSVTNKEIADKL
SKNVSYNISHSNIILDKQIKSTGVYTVEIRLHAELNDIVTVIVARSESEAQDYLREKK
TETSEDLAESA"
misc_feature 53015..53458
/gene="rplI"
/locus_tag="A1C_00350"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:178893"
misc_feature 53015..53155
/gene="rplI"
/locus_tag="A1C_00350"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 53198..53458
/gene="rplI"
/locus_tag="A1C_00350"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene 53771..55063
/locus_tag="A1C_00355"
/db_xref="GeneID:5644921"
CDS 53771..55063
/locus_tag="A1C_00355"
/note="COG0037 Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthetase TilS"
/protein_id="YP_001492912.1"
/db_xref="GI:157825192"
/db_xref="GeneID:5644921"
/translation="MLYEKFEYNINNLIGNFGLSKIAVAVSGGSDSVALLYLANIWAE
KNNIELSVISVDHNLREQSKQETYYVQNISNSLNRKHYSLSFDHQNNFSNLQERARAG
RYDLMTNLCLEFDILVLLTAHHEDDYVENFCLRLERNSGIFGLSSSNINWYNNIQIIR
PLYNIPKSELVEYLVSHNIKWFEDESNSSDKYRRNIIRQKLAKGAGYIKAEIILQQLK
INDLLDNKFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQIINFLLIIISGQ
FRAARFYSVEPILKLITQDVNFKNTLHGCVVKRIQNELLIYREFGKKLPESKILLDKS
IIWDNRFCITKNQENPDCVITYLSLEDYKTIKKQLDLAHLKDLSCKNHNAILFTLPII
KILEKVIAIPHISYYDNDMQNFEVSFAPNFVSRFTHFC"
misc_feature 53771..54601
/locus_tag="A1C_00355"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:30386"
misc_feature 53831..54373
/locus_tag="A1C_00355"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature order(53843..53851,53855..53866,53930..53932,53936..53938)
/locus_tag="A1C_00355"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
gene 55116..57029
/locus_tag="A1C_00360"
/db_xref="GeneID:5644922"
CDS 55116..57029
/locus_tag="A1C_00360"
/note="COG0465 ATP-dependent Zn proteases"
/codon_start=1
/transl_table=11
/product="cell division protein ftsH"
/protein_id="YP_001492913.1"
/db_xref="GI:157825193"
/db_xref="GeneID:5644922"
/translation="MNNQGRSVLAWAALFVFVILLFNVFQSDGLLGGRNNITFSDFLT
RVDEKTVNSVKIQGRVIEGTSNDGSTFNTYAPDYPDLVNRLTSNDVNIEVVPLETRMN
TFLGFLMSWFPMLLLIGVWVFFMRQMHGGGKAMGFGKSKARLLSDKGPKITFKDVAGI
DEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFS
ISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQ
TLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQIL
KVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAK
DKVLMGVARRSIAMSEKEKKMTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQ
RLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVT
KAGLSDLIGPIFHGSSGDDMYGRQPNNETSEATAELIDAEVKRIITQGYEFAKDILTK
HIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEEENKFPFNDSSTIKTDKEKLPEK
VKTSKAKKESTNI"
misc_feature <55209..55403
/locus_tag="A1C_00360"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:203464"
misc_feature 55422..56897
/locus_tag="A1C_00360"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature 55587..56075
/locus_tag="A1C_00360"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 55698..55721
/locus_tag="A1C_00360"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(55701..55724,55875..55877,56016..56018)
/locus_tag="A1C_00360"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 55863..55880
/locus_tag="A1C_00360"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 56058..56060
/locus_tag="A1C_00360"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 56265..56891
/locus_tag="A1C_00360"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 57126..57407
/locus_tag="A1C_00365"
/db_xref="GeneID:5644923"
CDS 57126..57407
/locus_tag="A1C_00365"
/note="COG0270 Site-specific DNA methylase"
/codon_start=1
/transl_table=11
/product="site-specific DNA methylase"
/protein_id="YP_001492914.1"
/db_xref="GI:157825194"
/db_xref="GeneID:5644923"
/translation="MCFSSDIGKDVQEAYKRNLGDKLYGNITEISAHKIPKHDILCAG
FPYQSFSILDKRLGIGDNNYRLFYEIIRIAQYHKPYISLLDNVKNNSDY"
misc_feature 57129..>57392
/locus_tag="A1C_00365"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature order(57138..57149,57198..57209,57255..57257,57261..57263)
/locus_tag="A1C_00365"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature order(57255..57257,57264..57269,57276..57287,57294..57296,
57312..57314,57378..57380,57384..57389)
/locus_tag="A1C_00365"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(57255..57257,57264..57266,57276..57278,57378..57380,
57384..57386)
/locus_tag="A1C_00365"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene 57985..58125
/gene="sdhB"
/locus_tag="A1C_00370"
/db_xref="GeneID:5644924"
CDS 57985..58125
/gene="sdhB"
/locus_tag="A1C_00370"
/EC_number="1.3.99.1"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_001492915.1"
/db_xref="GI:157825195"
/db_xref="GeneID:5644924"
/translation="MDNGNASIGQNVDTFLKNSISEHIDIIDKIGDLFKIEGNFLHTI
IQ"
gene 58505..58708
/locus_tag="A1C_00375"
/db_xref="GeneID:5644925"
CDS 58505..58708
/locus_tag="A1C_00375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492916.1"
/db_xref="GI:157825196"
/db_xref="GeneID:5644925"
/translation="MVLFLQIMVIFIIGNYIVIQRKGGNGSLSKTILKDSIRRPGNNM
QLKLKIKDFVNGMQDCELANYFV"
gene 58740..59525
/gene="sdhB"
/locus_tag="A1C_00380"
/db_xref="GeneID:5644926"
CDS 58740..59525
/gene="sdhB"
/locus_tag="A1C_00380"
/note="part of four member succinate dehydrogenase enzyme
complex that forms a trimeric complex (trimer of
tetramers); SdhA/B are the catalytic subcomplex and can
exhibit succinate dehydrogenase activity in the absence of
SdhC/D which are the membrane components and form
cytochrome b556; SdhC binds ubiquinone; oxidizes succinate
to fumarate while reducing ubiquinone to ubiquinol; the
catalytic subunits are similar to fumarate reductase"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_001492917.1"
/db_xref="GI:157825197"
/db_xref="GeneID:5644926"
/translation="MAELRLPPNSVVKKGKEYKEQEEMFKPRKVKIYRYDPDLDENPT
IDSFEIDLSKTGPMVLDALIKIKNEIDSTLAFRRSCREGICGSCSMNIDGTNTLACIK
PIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSHTPSNSERLQSIK
DREKLDGLYECILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTCERLEA
LEDPFKLYRCHTIMNCTKTCPKSLNPAKAIGKIKNLIAERRGV"
misc_feature 58824..59516
/gene="sdhB"
/locus_tag="A1C_00380"
/note="succinate dehydrogenase iron-sulfur subunit;
Reviewed; Region: sdhB; PRK05950"
/db_xref="CDD:180322"
misc_feature 58824..59138
/gene="sdhB"
/locus_tag="A1C_00380"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:205266"
gene 59601..59813
/locus_tag="A1C_00385"
/db_xref="GeneID:5645096"
CDS 59601..59813
/locus_tag="A1C_00385"
/note="COG3755 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492918.1"
/db_xref="GI:157825198"
/db_xref="GeneID:5645096"
/translation="MIQGDMNYCAGAEYKKVDKKLNQIYQEILKHLSNKKKLIYLKNS
KIDGLSTEMLIVNFGVLGFMVVLYLQ"
misc_feature 59613..>59732
/locus_tag="A1C_00385"
/note="Protein of unknown function (DUF1311); Region:
DUF1311; pfam07007"
/db_xref="CDD:203566"
gene complement(59948..61072)
/locus_tag="A1C_00390"
/db_xref="GeneID:5645097"
CDS complement(59948..61072)
/locus_tag="A1C_00390"
/note="COG1565 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492919.1"
/db_xref="GI:157825199"
/db_xref="GeneID:5645097"
/translation="MSIESKIRQLIKQNGYITCDVLMQEVLNLNPTSYYKKVKSLAGE
GDFVTAPEISQLFGEIIGLWCIKEWQRIGCPKSLSLVELGPGRGLLMRDLLRTAKLVP
EFYKALSIELIEINQNFIAHQKANLQDINLPISHRSFVEDIPKKPTIIIANEFFDAMT
IKQYIKVKELWYERIFVVQPVDGRIKYDKISINKPLQEYLLRTHIEAKDGAVLEESYK
SIEIIKFIAQHLKTLSGSCLIIDYGYDIAPNDRTGYQYNPTLQAVKNHQYCPILENLG
EADLSAHVDFYTLKTVAKNNKINVIDTIAQRDFLIENGILLRKQTLQNKLNNRHLSKL
PLEVEFEKVSKQAGIIEKQVERLISPKQMGTLFKVLQIMH"
misc_feature complement(59954..61072)
/locus_tag="A1C_00390"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(60188..60892)
/locus_tag="A1C_00390"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene complement(61051..61830)
/locus_tag="A1C_00395"
/db_xref="GeneID:5645098"
CDS complement(61051..61830)
/locus_tag="A1C_00395"
/note="transfers the N-acyl diglyceride moiety to the
prospective N-terminal cysteine in prolipoprotein"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_001492920.1"
/db_xref="GI:157825200"
/db_xref="GeneID:5645098"
/translation="MTFPNINPIIFYLGPLAISWYSLSYVVGILLSWFYANKIIEKFK
PQINKKTLEDFITYAVIGIIVGGRLGFVLLYNPSRYFLHPIDILKTYEGGMSFHGGAL
GVIIAAYLFCRKYKVNFLSLTDIIAAVVPIGLFLGRIANFINGELYGRITNASFGMIF
PNSDLMPRHPSQLYEAFFEGLVLFCILAYATFKNKTLKNCGLNSGLFLTFYALFRIAI
EIFREPDIQIGFILDNLTMGQILSVPMLILGSYLICQSNPK"
misc_feature complement(61072..61830)
/locus_tag="A1C_00395"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:178826"
gene 62087..63241
/locus_tag="A1C_00400"
/db_xref="GeneID:5645099"
CDS 62087..63241
/locus_tag="A1C_00400"
/note="COG0668 Small-conductance mechanosensitive channel"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492921.1"
/db_xref="GI:157825201"
/db_xref="GeneID:5645099"
/translation="MDLYHTASTELVLLFVMLVSLIPVIFLIKRLIFIPVQNYLTRHH
DYKYERILKKYPIFRYLLHTLLALYFVGWGNIFHITSFKAHVLLGIKDIIVILYTSIS
VTMLLLTLIDAFADLYHDRIKVVAKNAPLSLYFQILKIIVVVIAVMVTISYMLNISLS
TFLTSLGAAAALLTFVFKDTVLGLLASLQLTTQEIINIGDWVRIGKIEGTVEKITISV
VTIRNFDQSISTVPTYSILNSNVTNYRGISESGARRVKRVFNINMATINFCDATILKE
LKKSPHISKDVIDKITIDKEQKDLTNIKLFKLYIQEYLKNNPAVYTEGFTFLVRQLEP
TITGLPIEIYIFIKEVNLVGYENIQDNISEHLISILPEFKLKIFQNIGVV"
misc_feature 62315..63226
/locus_tag="A1C_00400"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 62612..63193
/locus_tag="A1C_00400"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 63370..65052
/locus_tag="A1C_00405"
/db_xref="GeneID:5645100"
CDS 63370..65052
/locus_tag="A1C_00405"
/note="functions to insert inner membrane proteins into
the IM in Escherichia coli; interacts with transmembrane
segments; functions in both Sec-dependent and -independent
membrane insertion; similar to Oxa1p in mitochondria"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_001492922.1"
/db_xref="GI:157825202"
/db_xref="GeneID:5645100"
/translation="MNNNIINLIAAIVLSLSIIFGWQYFVIKPEQKKQQQQIAVQKAA
NLKKQQLKALVEPATDIVVQEESQVQRIKIESESLTGSISLKGLRFDDLILKKYKQDL
SKNSSDVVLFSPTNTEHSYFAEIGLVSNLSSVKLPNNDTIWSSDGEILSPEKPVNLFW
VNEDGVKFLVTITVDKNYLFTIEQTIVNNSDKELPIQSYGLINRKYTAVEKAVNILHQ
GPIGCIDENLKEYSYDDIKDKKSEKFAASKVDWIGITDKYWLSALIPDKSSNYSSNFN
YAVKQGIEKYQVDFISPVQIIKPGENFAIKSRIFAGAKKVDLLDQYEKQYDIKLFDRA
IDFGWFYIITKPVFYAMNFFYGYVGNFGVSILIVTVIIKLLMFTLANKSYRSMKKIKN
LQPEIDRIKNLYSDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVT
IEMRQAQFYGWIKDLSAPDPTTIFNLFGLLPFSPPSFLMIGAWPILMAITMFLQQKMS
PEPADPMQAQVMKFMPLIFLFMFSSFPVGLLIYWSWNNILSIIQQYYINKFN"
misc_feature 63559..65049
/locus_tag="A1C_00405"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature 64447..65043
/locus_tag="A1C_00405"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene 65052..65597
/locus_tag="A1C_00410"
/db_xref="GeneID:5645101"
CDS 65052..65597
/locus_tag="A1C_00410"
/note="COG0558 Phosphatidylglycerophosphate synthase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_001492923.1"
/db_xref="GI:157825203"
/db_xref="GeneID:5645101"
/translation="MRIDKNLPNYLTIARIMVIPVIILAFYINNSLARKIGALLFVLA
SITDFFDGYIARKYNLVTSFGKMFDPIADKILVGCVIIMLLKKGNIDEIPCLLILARE
FLVSGLREFLALVKVSVPVSRLAKVKTFLQMFALSILILGSKGAGIIYLDIVGEIILW
IAAFLTIITGYSYFKACKKYF"
misc_feature 65064..65573
/locus_tag="A1C_00410"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 65612..66172
/locus_tag="A1C_00415"
/db_xref="GeneID:5645102"
CDS 65612..66172
/locus_tag="A1C_00415"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492924.1"
/db_xref="GI:157825204"
/db_xref="GeneID:5645102"
/translation="MIYVKYTILVFIMVFSVNLYATHNDIIANKKIVKVEVSNEHLKT
LNEASTLLISCVDFRLIDETDKLMKQLGLEDNFDKVSLPGASLALVNDKYTYWGKTIE
DTIEILQELHNIKQVVFLDHRECGAYKILIGQEQLNTKERETAAHAEILNKARDIIKE
KFPQLKVYTFLMDLDGVVEQIYEIPS"
gene complement(66476..66859)
/locus_tag="A1C_00420"
/db_xref="GeneID:5644992"
CDS complement(66476..66859)
/locus_tag="A1C_00420"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492925.1"
/db_xref="GI:157825205"
/db_xref="GeneID:5644992"
/translation="MIKKIIFGIAILLSTSCFANSTTSNGSKKDATKSNDATTQKIID
DFSAYAGTIKPEVREEIQKYRVEIVAINKKKRELYKSLSKEAQNFLAVQQKYKQKLSI
SKLTAEDEPKNNTDDSNNNKDSDTK"
gene 67369..67653
/locus_tag="A1C_00425"
/db_xref="GeneID:5644993"
CDS 67369..67653
/locus_tag="A1C_00425"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="tellurite resistance protein-like protein"
/protein_id="YP_001492926.1"
/db_xref="GI:157825206"
/db_xref="GeneID:5644993"
/translation="MTSYLAKKAHILDAGYGVGRDTKYFLGQGYQVSAFDGSSEIVKL
ATKETGIDVLHSTFQDIDFKESFGVVWAQATLLHRSYNETINVYKKFTLN"
misc_feature 67402..>67602
/locus_tag="A1C_00425"
/note="Methyltransferase domain; Region: Methyltransf_11;
pfam08241"
/db_xref="CDD:203885"
gene 67847..67933
/locus_tag="A1C_00430"
/db_xref="GeneID:5644994"
CDS 67847..67933
/locus_tag="A1C_00430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492927.1"
/db_xref="GI:157825207"
/db_xref="GeneID:5644994"
/translation="MDRKIINNVTGNEYEALGELQYVPYLMQ"
gene complement(68372..68674)
/locus_tag="A1C_00435"
/db_xref="GeneID:5644995"
CDS complement(68372..68674)
/locus_tag="A1C_00435"
/note="COG0242 N-formylmethionyl-tRNA deformylase"
/codon_start=1
/transl_table=11
/product="polypeptide deformylase"
/protein_id="YP_001492928.1"
/db_xref="GI:157825208"
/db_xref="GeneID:5644995"
/translation="MPKTIWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCH
AYDINGHQIQGITEGFLARVIQHEIDHLNGKVFLDYVAPEKIMTKEKYLEKRKKAM"
misc_feature complement(68381..>68671)
/locus_tag="A1C_00435"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cl00234"
/db_xref="CDD:185851"
misc_feature complement(order(68462..68464,68471..68476,68597..68605))
/locus_tag="A1C_00435"
/note="active site"
/db_xref="CDD:29602"
misc_feature complement(order(68462..68464,68474..68476,68600..68602))
/locus_tag="A1C_00435"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
misc_feature complement(order(68471..68473,68597..68599))
/locus_tag="A1C_00435"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
gene 69227..70723
/locus_tag="A1C_00440"
/db_xref="GeneID:5644996"
CDS 69227..70723
/locus_tag="A1C_00440"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_001492929.1"
/db_xref="GI:157825209"
/db_xref="GeneID:5644996"
/translation="MSTPKSDNCLSELRKVIWPIERYENKKFLPMAFMMFCILLNYST
LRSIKDGFVVTDIGAEAISFLKTYIVLPSAVVAMVIYVKLCDILKQENVFYVIASFFL
GYFALFAFVLYPYPDLVHPDPETIESLSLAYPNFKWFIRIVGQWSFASFYTMAELWGT
MMLSLLFWQFANQITKTDEAKRFYSMFGLLANLALPVTSVIIGYFLHEKTQIVAEHLK
FVPLFVIMMTSSLLVILTYRWMNKNVLTDPGLYDPALVKEKKAKAKMSLIDSFKMIFT
SKYVGYIALLLIAYGVSVNLVEGVWKSKVKELYPTKEAYTIYMGKFQFYQGWVAIAFM
LIGSNILRKVSWLTAAMITPLMMLITGAAFFTFIFFDSVIAMHLTGILASGPLALAVM
IGMIQNVLSKGVKYSLFDATKNMAYIPLDKDLRVKGQAAVEVIGGRFGKSGGAIIQST
FFILFPAFGFVEATPYFASIFFVIVILWIYAVKGLNKEYQVLVNKTEK"
misc_feature 69233..70693
/locus_tag="A1C_00440"
/note="TLC ATP/ADP transporter; Region: TLC; pfam03219"
/db_xref="CDD:146045"
misc_feature 69284..70693
/locus_tag="A1C_00440"
/note="ADP/ATP carrier protein family; Region: AAA;
TIGR00769"
/db_xref="CDD:162032"
gene 70807..72096
/locus_tag="A1C_00445"
/db_xref="GeneID:5644997"
CDS 70807..72096
/locus_tag="A1C_00445"
/note="COG2271 Sugar phosphate permease"
/codon_start=1
/transl_table=11
/product="sugar phosphate permease"
/protein_id="YP_001492930.1"
/db_xref="GI:157825210"
/db_xref="GeneID:5644997"
/translation="MTDTKPKIKTPRSPYVKKYNSWRVRILYSIIIGYATFYLCRQNF
NIATPAIREYFGVTKTQIGWILTASSIMYGVSKACNGFISDKVNARIFMVLGLLVVGI
ITILIGFSYSLWFIGILWISSNWFQSMGWPPATKMLTHWFASKELGTKWAMGTTSNQI
GGAIAMISCGYLIDKFDWRAAFFVPGVVACVVSLFLYNRLRNSPKEVGLSTVEEYKEY
PPESIGDYEKLLTPQLLRMVFCNRLIWYVCLANMFVYIIRSGVIYWAPTFLKDLRNIS
LANAGLQIGLYEMIGIPGALIAGFLSDKLFQGRRGPIGAICMVLLSLLLVLFWTIPIQ
SELLSIVILSLIGFFVAGPQLLVGIAAADFSTRQAVGTANGLSGLFGYLGASIAGIGV
GWISDHYGWNGVFIFFSISALLGGGLFALTWNRSAKK"
misc_feature 70807..72093
/locus_tag="A1C_00445"
/note="Sugar phosphate permease [Carbohydrate transport
and metabolism]; Region: UhpC; COG2271"
/db_xref="CDD:32452"
misc_feature 70885..72075
/locus_tag="A1C_00445"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(70927..70929,70936..70944,70948..70953,71002..71004,
71011..71016,71023..71025,71035..71040,71044..71049,
71185..71190,71197..71202,71209..71214,71221..71223,
71257..71262,71269..71274,71290..71292,71569..71571,
71578..71583,71590..71595,71602..71604,71644..71646,
71656..71658,71668..71670,71677..71679,71689..71691,
71845..71847,71854..71859,71866..71868,71878..71883,
71890..71892,71923..71928,71935..71940,71947..71952,
71959..71961)
/locus_tag="A1C_00445"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 72124..72546
/gene="ndk"
/locus_tag="A1C_00450"
/db_xref="GeneID:5644998"
CDS 72124..72546
/gene="ndk"
/locus_tag="A1C_00450"
/EC_number="2.7.4.6"
/note="catalyzes the formation of nucleoside triphosphate
from ATP and nucleoside diphosphate"
/codon_start=1
/transl_table=11
/product="nucleoside diphosphate kinase"
/protein_id="YP_001492931.1"
/db_xref="GI:157825211"
/db_xref="GeneID:5644998"
/translation="MTIQYTFSMIKPDAIKRNKIGQVNAYLENGGLKIVAQKMRFLTK
YEAECFYDEHRARTFFNSLVEYITSGAVVLQVLKGEDAIILNRTIMGATNPAEAEAGT
IRKDLGESIEANSIHGSDSENSAKREIAFFFNKSEIIE"
misc_feature 72133..72522
/gene="ndk"
/locus_tag="A1C_00450"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(72154..72156,72274..72276,72298..72300,72382..72384,
72400..72402,72433..72435,72463..72465,72472..72474,
72478..72483,72505..72507)
/gene="ndk"
/locus_tag="A1C_00450"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(72166..72168,72181..72189,72196..72198,72205..72207,
72232..72240)
/gene="ndk"
/locus_tag="A1C_00450"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 72550..74418
/locus_tag="A1C_00455"
/db_xref="GeneID:5645365"
CDS 72550..74418
/locus_tag="A1C_00455"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="YP_001492932.1"
/db_xref="GI:157825212"
/db_xref="GeneID:5645365"
/translation="MLKYDVIVIGGGHAGVEAAAASARLGVSTLLITLKPDNLGEMSC
NPAIGGIAKGTLVKEIDALDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYK
KAMYQILTNYPNLDILYGKVEDIEIKSSKVAAIVLNNDSKIPCQKIILTTGTFLSGLI
HIGKKKIPAGRVDEEPSYGLSKTLKKVGFKIARLKTGTPPRIDGRTIDYSKTALQPGD
KAPRPFSELTNVVNVPQINCFITKTTSETHDIIRENLNKSAMYSGQIEGIGPRYCPSI
EDKIVRFSTKSEHRIFLEPEGLDDYTIYPNGISTSLPEDVQHKLIKTIPGLENVKVLR
LGYAIEYDYVDPREISVTLETKKIAGLYFAGQINGTTGYEEAAGQGIIAGINAALAVK
DQAQFILTRANSYIGVMIDDLTTFGTIEPYRMFTSRSEYRLSLRADNADLRLTELGIN
IGVISEKRKKIFTKKYEDIEKTKSLLNTLSFTTSKLAKMDIQVAQDGTYKTVLDLFKI
PSFNIEQAIKIFPMLKEMQNNNILQLLYIEAKYASYLTRQQADINLFQSEEAQLIPKN
IDYFKIPSISLEIQEKLSSHKPTTIGLARRIPGITPAAITSIIIYLKTKYSDGSFT"
misc_feature 72550..74409
/locus_tag="A1C_00455"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature <73498..>73674
/locus_tag="A1C_00455"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 74167..74379
/locus_tag="A1C_00455"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 74402..74977
/gene="gidB"
/locus_tag="A1C_00460"
/db_xref="GeneID:5645366"
CDS 74402..74977
/gene="gidB"
/locus_tag="A1C_00460"
/note="glucose-inhibited division protein B; SAM-dependent
methyltransferase; methylates the N7 position of guanosine
in position 527 of 16S rRNA"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase GidB"
/protein_id="YP_001492933.1"
/db_xref="GI:157825213"
/db_xref="GeneID:5645366"
/translation="MEVSREIIEKLEIFQKLVKKWNKSINLVSGNTIHNFWQRHILDS
LQLMQYIDNKEIHLVDIGSGAGFPGIVLSIAGVAKVSLIEADLRKCIFLEKASKISNN
NIQIINQRIEKVAIDCSILTCRAFSKLNTIFNCIKNISVQEKVLLLKGKNYLTEIVAA
KEMWLFDYLIHQSITCEEGKILEVSNLTKII"
misc_feature 74420..74953
/gene="gidB"
/locus_tag="A1C_00460"
/note="rRNA small subunit methyltransferase G; Region:
GidB; pfam02527"
/db_xref="CDD:111429"
gene 74974..75741
/locus_tag="A1C_00465"
/db_xref="GeneID:5645367"
CDS 74974..75741
/locus_tag="A1C_00465"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="soj protein"
/protein_id="YP_001492934.1"
/db_xref="GI:157825214"
/db_xref="GeneID:5645367"
/translation="MKVIAIVNQKGGVAKTTTTVNLATAFAAVNKKILVIDLDPQGNS
STGFGIRQQQRKNTIYQVLTNLIELKDAIISTDIPNLAIVTSNTNLSAAELDLTKLKD
REYILMKLLEEIKILYDYIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHL
LKTIEIVEKRLNPKIKIAGILFTMYDKRNRLTEQVEDDVRKCLGELVFKTVIPRNIKL
SEAPSYGKPAIIYDYKCSGAVAYIELTKEILERYGEK"
misc_feature 74974..75738
/locus_tag="A1C_00465"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:31385"
misc_feature 74980..>75096
/locus_tag="A1C_00465"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 75001..75021
/locus_tag="A1C_00465"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature 75019..75021
/locus_tag="A1C_00465"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature <75328..75522
/locus_tag="A1C_00465"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 75343..75345
/locus_tag="A1C_00465"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 75728..76588
/locus_tag="A1C_00470"
/db_xref="GeneID:5645368"
CDS 75728..76588
/locus_tag="A1C_00470"
/note="COG1475 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="stage 0 sporulation protein J"
/protein_id="YP_001492935.1"
/db_xref="GI:157825215"
/db_xref="GeneID:5645368"
/translation="MAKNKGLGRGLSSLLGEEVISIESERIQTINIDKIRPNENQPRK
NLEYDKIKELADSILNNGLLQPIIVDNNFQIIAGERRWRACKLAKVLEIPVIIKNLDA
RESMEIALIENIQRTDLTVMEEARGFKYLVENFNYTTEKLAERLGKSRSHIANLLRLN
NLPQSIQDKLNDNILSMGQARCLINHEHAEVIADHIIKNDLNVRQTEELVRQWYKNEC
KKSPKNNHKVEKRFLKDNAADNDLELLVKALSEKFGIEITIENYQLGGKLIFHYKDLE
ELDLILLKLN"
misc_feature 75815..76069
/locus_tag="A1C_00470"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
misc_feature 76127..>76255
/locus_tag="A1C_00470"
/note="KorB domain; Region: KorB; pfam08535"
/db_xref="CDD:149550"
gene 76776..78443
/locus_tag="A1C_00475"
/db_xref="GeneID:5645369"
CDS 76776..78443
/locus_tag="A1C_00475"
/note="ChvD; in Agrobacterium tumefaciens, mutations in
both Walker boxes were found to affect virulence"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_001492936.1"
/db_xref="GI:157825216"
/db_xref="GeneID:5645369"
/translation="MSYQYVYEMVGLSKIINGKRILKETNLSFLPKAKIGIIGPNGAG
KSTLLKIMAGIDKEFEGKAIAKIGIKVGYLPQEPYLDSSKNVFDNIIEGLYEKKKLID
EFNDISNKFAAEITDEEMQQLFDKQAKLQEKIDNCDGWNLEREIEIAMLALRCPPKEA
DITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEGYLKHYEGTVIVIT
HDRYFLDNVTEWILEIDRGNCIAWESNYSSWLEQKQQKLALESKEDNDRKKQLNRELE
WIRQTPKARQSKNKARITAYQELLNKQQKQKIDPTQIIIPNGPRLGDLVIEAEHIAKK
FDSKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKITPDSGSIKIGQTVKLGY
VDQSRDHLDDNKTIWEEISEGLDELQLGNRIIKSRAYCAAFNFRGGDQQKKVGQLSGG
ERNRVHLAKLLKEGANVILLDEPSNDLDIDTLRALEDAILDFAGCVLVISHDRWFLDR
IATHIISYDKDNNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI"
misc_feature 76776..78437
/locus_tag="A1C_00475"
/note="putative ABC transporter ATP-binding protein;
Reviewed; Region: PRK11819"
/db_xref="CDD:183324"
misc_feature 76797..>77003
/locus_tag="A1C_00475"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature <77259..77486
/locus_tag="A1C_00475"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature 77469..77672
/locus_tag="A1C_00475"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 77751..78332
/locus_tag="A1C_00475"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene 78446..78763
/locus_tag="A1C_00480"
/db_xref="GeneID:5645370"
CDS 78446..78763
/locus_tag="A1C_00480"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492937.1"
/db_xref="GI:157825217"
/db_xref="GeneID:5645370"
/translation="MSLTQILLILFVGILVTKPHDIFIIIKELKKIKAYLINIKSSII
RNIDEPLETEQINFYLKNIINLEGYYHGNYDLTTIKEKYYTLIINNDLIKNESVPDIT
EQH"
misc_feature 78560..78721
/locus_tag="A1C_00480"
/note="Protein of unknown function (DUF2672); Region:
DUF2672; pfam10878"
/db_xref="CDD:151327"
gene 78798..79622
/locus_tag="A1C_00485"
/db_xref="GeneID:5645371"
CDS 78798..79622
/locus_tag="A1C_00485"
/EC_number="2.5.1.55"
/note="catalyzes the formation of
2-dehydro-3-deoxy-D-octonate 8-phosphate from
phosphoenolpyruvate and D-arabinose 5-phosphate in LPS
biosynthesis"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_001492938.1"
/db_xref="GI:157825218"
/db_xref="GeneID:5645371"
/translation="MQKIVKLNNIKIGNDLPFVLIAGPCQIEGKDHALFMAEKLVKLT
SKLDIAFIYKSSFDKANRTSVNGIRGVGIEKGLEILSKVKSEFDCPIVTDIHSESQCT
ETAEVADILQIPAFLCRQTDLLQAAAKTGKIVKVKKGQFLAPWDMKNVQTKLQAFGVK
DILFTERGACFGYNNLVSDMRSLAIMAELNVPIVFDATHSVQQPGGLGGSTGGDRKYV
ELLAKAAIAVGIAGMYMEVHQDPDNAPSDGPCMMKLDNLESILIKLKKYDKITKEK"
misc_feature 78819..79616
/locus_tag="A1C_00485"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
misc_feature 78819..79610
/locus_tag="A1C_00485"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
gene 80008..80202
/locus_tag="A1C_00490"
/db_xref="GeneID:5644706"
CDS 80008..80202
/locus_tag="A1C_00490"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492939.1"
/db_xref="GI:157825219"
/db_xref="GeneID:5644706"
/translation="MKLCNIEEILTPNTSFIYKYEYKDIIAWLSNNTRSIFNEILVKP
NSGLAEFIQELLGILVTNPL"
gene complement(80966..81298)
/locus_tag="A1C_00495"
/db_xref="GeneID:5644707"
CDS complement(80966..81298)
/locus_tag="A1C_00495"
/note="COG0316 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="Iron-sulfur cluster assembly accessory protein"
/protein_id="YP_001492940.1"
/db_xref="GI:157825220"
/db_xref="GeneID:5644707"
/translation="MTITITDRAFQRVCELIELEKDKHLVLRVSVDSGGCSGLMYNYE
LVSKDDIDQDDYVITKHNATIIVDPISQKFMLDCTLDFIEELGSSYFNVSNPQAKLKC
GCGNSFSV"
misc_feature complement(80969..81289)
/locus_tag="A1C_00495"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 81556..82731
/locus_tag="A1C_00500"
/db_xref="GeneID:5644708"
CDS 81556..82731
/locus_tag="A1C_00500"
/note="dGTPase family type 2 subfamily; presumably
hydrolyzes dGTP to deoxyguanosine and triphosphate"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate
triphosphohydrolase-like protein"
/protein_id="YP_001492941.1"
/db_xref="GI:157825221"
/db_xref="GeneID:5644708"
/translation="MLASYASDPLKSRGRLYKEIPTSYRNEFECDRDRIINTNAFRRL
QYKTQVFINHEGDHYRNRLTHSLEVSTVARSVANTLNLSSDLAETIALAHDLGHTPFG
HAGERALNECMKEYSGFSHNAQSLKILTLLEKRYAAYNGVNLTWEVLEGIIKHNGPIT
GEINEYIAEYNKQNDLELSTYASAEAQIASLADDISYISHDLEDSIGAKIIDFNSLAE
LKYIDQHVFELKSKFKNISSSCLIYEVVRKLMHELITDLLWQTKENLNKEKIINIYEI
RHLNYQIVDFTEKTNDRIKETKKFLHERVYKSNKITAISLKCTKIVQGLFKVYMDDIN
LLPVNWKMLIDSDDTYSKARVIADYIAGMTDRFAIQEYNQLCSLNFNNILKLNYEYI"
misc_feature 81556..82704
/locus_tag="A1C_00500"
/note="deoxyguanosinetriphosphate triphosphohydrolase-like
protein; Provisional; Region: PRK01286"
/db_xref="CDD:179272"
misc_feature 81733..82182
/locus_tag="A1C_00500"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(81748..81750,81835..81840,82132..82134)
/locus_tag="A1C_00500"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 81838..81840
/locus_tag="A1C_00500"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 82405..82677
/locus_tag="A1C_00500"
/note="Phosphohydrolase-associated domain; Region:
HD_assoc; pfam13286"
/db_xref="CDD:205466"
gene 82718..84448
/gene="argS"
/locus_tag="A1C_00505"
/db_xref="GeneID:5644709"
CDS 82718..84448
/gene="argS"
/locus_tag="A1C_00505"
/EC_number="6.1.1.19"
/note="catalyzes a two-step reaction, first charging an
arginine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA
synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_001492942.1"
/db_xref="GI:157825222"
/db_xref="GeneID:5644709"
/translation="MNIFNKLKQDIIAASRQLYNNQEIANNATIETPKDNFNGDLSSN
IAMIIAAKENISPREVALKFKEILITLPYIASIEIAGPGFINFTIKAETWQIAIKDIL
QHEEKFCEIDIDKSRNINIEYVSANPTGPMHIGHARGAVYGDVLARILQKVGYFVTKE
YYVNDAGSQINDLVSTVLLRYREALGETITIPDGLYPGEYLIPLGQILAEEYGNKLLM
MDEEERFKIVKNFAVEKMLDLNRKDLADLGIKHDIFFSEQSLHDKCAIEETVKLLTGM
GLIYEGILPPPKGKVHDEWDNRVQKLFKSTNYGDSQDRPIEKADGSWSYFASDLAYAK
DKIDRGVSHLIYVLGADHSGYVKRIEAIVKALGKEQVKVDVKICQLVNFVENGVPVKM
SKRLGSFASVQDVNHEVGKDIIRFMMLTRQNDKPLDFDLVKVKEQSRENPIFYVQYAH
VRTISILSKARELMPESYNNFEACKYDLSLLSSEEEIAIIKLLASWTKTLETSAKYFE
PHRIAFYLINLASKFHSMWNFGKEHSDYRFIIESNKELTTARLALATAIQKVIASGLE
VIGVEPMDRM"
misc_feature 82724..84445
/gene="argS"
/locus_tag="A1C_00505"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature 82730..82984
/gene="argS"
/locus_tag="A1C_00505"
/note="Arginyl tRNA synthetase N terminal domain; Region:
Arg_tRNA_synt_N; pfam03485"
/db_xref="CDD:202664"
misc_feature 83069..83908
/gene="argS"
/locus_tag="A1C_00505"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(83081..83083,83090..83092,83096..83098,83114..83116,
83123..83125,83690..83692,83702..83704,83771..83773,
83780..83782)
/gene="argS"
/locus_tag="A1C_00505"
/note="active site"
/db_xref="CDD:185675"
misc_feature 83114..83125
/gene="argS"
/locus_tag="A1C_00505"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature <83888..84004
/gene="argS"
/locus_tag="A1C_00505"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 83891..83902
/gene="argS"
/locus_tag="A1C_00505"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature order(84011..84013,84029..84031,84059..84061,84071..84076,
84080..84085,84257..84259,84278..84280,84287..84289,
84296..84298)
/gene="argS"
/locus_tag="A1C_00505"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature 84053..84445
/gene="argS"
/locus_tag="A1C_00505"
/note="DALR anticodon binding domain; Region: DALR_1;
smart00836"
/db_xref="CDD:197905"
misc_feature order(84059..84061,84068..84073,84080..84085,84296..84298)
/gene="argS"
/locus_tag="A1C_00505"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 84595..85269
/locus_tag="A1C_00510"
/db_xref="GeneID:5644710"
CDS 84595..85269
/locus_tag="A1C_00510"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492943.1"
/db_xref="GI:157825223"
/db_xref="GeneID:5644710"
/translation="MINNVFVKICLVCLICISGVYFSYQYYQNSKPVITIYPDELPTK
IRPSIIENNQIAAVHSTIYENLIAKDTNIQTVILLPDPEKPMSIDSRNQSQSDESFDE
ISNLIALIEPSNNAKNETDLNIIKLENGSKNKVSNAKNCKNNESYKVQLGSVKSEAEA
MQEGERIKKKFPKIFKNVVITTKKVKYDDGKFFYLILAGDYGSLSQAKAVCKKLAYNK
QSCVLK"
misc_feature 85021..85266
/locus_tag="A1C_00510"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 85287..85445
/locus_tag="A1C_00515"
/db_xref="GeneID:5644711"
CDS 85287..85445
/locus_tag="A1C_00515"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492944.1"
/db_xref="GI:157825224"
/db_xref="GeneID:5644711"
/translation="MIEDFDEMTIEEDVAFSTLADKRLKETKYWIKHEDAWDISGIVS
ERCCVDTQ"
gene 85586..87799
/locus_tag="A1C_00520"
/db_xref="GeneID:5644712"
CDS 85586..87799
/locus_tag="A1C_00520"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_001492945.1"
/db_xref="GI:157825225"
/db_xref="GeneID:5644712"
/translation="MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHR
RLLYAMLQLKLEPNSGYKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLID
GQGNFGSIDGDNAAAMRYTESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPAS
FPNLLANGSEGIAVGMATNIPPHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTG
GIIIDKAEVINAAYNTGRGSFRVRSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVA
ILLKDKKIPLVSNIRDESTDIIRLVIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNV
IGSNNVPRVMNILEVLQEFLAHRQNIVTRRSTYLVNKIKHRLEILAGLRIAYLNLDEI
IKIIREEDEPKAIMMERFKLTEIQVEAILNTRLRSLRKLEEHEIINEHSNLQKQQAIL
EEILNNPKELWKIVKKEIKAVQMQFGLNTVIGDRRTSFEEVTLTNQVVDITAFVTKEP
ITIICSKMGWVRSLKGHNTDLSNIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTLLA
DNIPKGKGTGESIKLLVDIGNNDITNILVHKPDQLLLLASSVGKGFLVNSNEVIAQTK
TGKQVMNVPDGHACIACLHVAGDAVACIGESRKLLVFNVDEIPEMKKGQGVTLQKFKN
AKLLDIKIFNKEDGLCWNNNGKVKLEKNIIAFLGQRGSTGKLPPMGFPKNNRFSS"
misc_feature 85586..87790
/locus_tag="A1C_00520"
/note="DNA topoisomerase IV subunit A; Validated; Region:
PRK05561"
/db_xref="CDD:180129"
misc_feature 85667..86998
/locus_tag="A1C_00520"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(85667..85750,85763..85912,85916..85972,85976..86047,
86054..86056)
/locus_tag="A1C_00520"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 85943..85945
/locus_tag="A1C_00520"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(86744..86752,86759..86770,86792..86797,86837..86887)
/locus_tag="A1C_00520"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
gene complement(87929..88105)
/locus_tag="A1C_00525"
/db_xref="GeneID:5645665"
CDS complement(87929..88105)
/locus_tag="A1C_00525"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492946.1"
/db_xref="GI:157825226"
/db_xref="GeneID:5645665"
/translation="MREDYFTIMQFVKDSNKLLTGVYNLFGNNNEDLTYYQLEESHQD
NQVDIIGVGDSNIY"
gene complement(88459..88617)
/locus_tag="A1C_00530"
/db_xref="GeneID:5645666"
CDS complement(88459..88617)
/locus_tag="A1C_00530"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492947.1"
/db_xref="GI:157825227"
/db_xref="GeneID:5645666"
/translation="MNHAQFTTSGYSFVNGLKAVTRYATDTKLLFKNAYNFISSSNLK
KYLQYYML"
gene complement(89150..90469)
/locus_tag="A1C_00535"
/db_xref="GeneID:5645667"
CDS complement(89150..90469)
/locus_tag="A1C_00535"
/note="COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A
subunit and related amidases"
/codon_start=1
/transl_table=11
/product="putative surface antigen"
/protein_id="YP_001492948.1"
/db_xref="GI:157825228"
/db_xref="GeneID:5645667"
/translation="MKKLLLAASIICFASATLAEENSTPVISNSDTEIKLEGFYLFES
GYIKQNHLILFDKNVTDNRKTLGFYTEGAFAATVSKTINDVIVGAKIVLQPTTKVKTS
ASYNGSHIFIKTSYGKVELGSPVDASSKLRITGSQVTAGTGGWYRYALLDGQYMRFHG
LKPDFDTSASFYLESYSNSFNQINEKTEKARRLNFFTPKMKGFQAGISYTPDTANTGG
NKNINNLTLEGSGRNGVSVARTGIKTVSLGNGETMAINQNIRDAFSAGLTYEHEISED
ADLKLSVTGEYGKPARRLVHAKMEDTKVIEVLNTYKLSNLKAYNLGAVFTYGNFSCGA
SYGNLGRSLTAKEYYKVGRDTYYYNGAVAYGQGPIKTSLEYIKTSRYKNTVDAVSLAT
EYKIMPGLLPYAEISHFQAKGKPVYYPEAPIKTTRGTVGLIGTKLKF"
misc_feature complement(89228..90301)
/locus_tag="A1C_00535"
/note="Gram-negative porin; Region: Porin_4; pfam13609"
/db_xref="CDD:205787"
gene 90754..91320
/gene="dcd"
/locus_tag="A1C_00540"
/db_xref="GeneID:5645668"
CDS 90754..91320
/gene="dcd"
/locus_tag="A1C_00540"
/EC_number="3.5.4.13"
/note="Catalyzes the formation of dUTP from dCTP in
thymidylate biosynthesis"
/codon_start=1
/transl_table=11
/product="deoxycytidine triphosphate deaminase"
/protein_id="YP_001492949.1"
/db_xref="GI:157825229"
/db_xref="GeneID:5645668"
/translation="MAIMSDKWIKEAVINQSMISPFAEKQVRVHNKEKIISYGLSSYG
YDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKIPR
DVLVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFL
KSDQICDTSYADRQGKYMKQVGVTLPLT"
misc_feature 90967..91230
/gene="dcd"
/locus_tag="A1C_00540"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature order(91000..91002,91015..91020,91024..91026,91072..91074,
91078..91095,91108..91116,91126..91128,91135..91137,
91156..91158,91162..91164,91168..91170,91174..91176,
91186..91200,91207..91209,91219..91221)
/gene="dcd"
/locus_tag="A1C_00540"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(91084..91092,91126..91134,91141..91143,91153..91158)
/gene="dcd"
/locus_tag="A1C_00540"
/note="active site"
/db_xref="CDD:143638"
gene 91529..91987
/locus_tag="A1C_00545"
/db_xref="GeneID:5645669"
CDS 91529..91987
/locus_tag="A1C_00545"
/note="molecular chaperone that is required for the normal
export of envelope proteins out of the cell cytoplasm; in
Escherichia coli this proteins forms a homotetramer in the
cytoplasm and delivers proteins to be exported to SecA"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_001492950.1"
/db_xref="GI:157825230"
/db_xref="GeneID:5645669"
/translation="MSTINTDTNEAMPHISVNAQYIKDLSLENPSAPSSLAALDQRPQ
IDLSLDINITNLSEENFYEVELNIEATARNEKYKLFHIELKYAGVFNLINIDSEQHPI
LLSVHCPAMIFPFARKIISSCTQDAGFQPLMIDPIDFGALYHKKMSEHQN"
misc_feature 91571..91963
/locus_tag="A1C_00545"
/note="Preprotein translocase subunit SecB. SecB is a
cytoplasmic component of the multisubunit membrane-bound
enzyme termed Sec protein translocase, which is the main
constituent of the General Secretory (type II) Pathway
involved in translocation of nascent...; Region:
Translocase_SecB; cd00557"
/db_xref="CDD:29643"
misc_feature order(91598..91600,91610..91612,91769..91771,91775..91777)
/locus_tag="A1C_00545"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(91766..91768,91772..91774,91778..91780,91784..91786)
/locus_tag="A1C_00545"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene 92212..92925
/locus_tag="A1C_00550"
/db_xref="GeneID:5645670"
CDS 92212..92925
/locus_tag="A1C_00550"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="transcriptional activator protein CzcR"
/protein_id="YP_001492951.1"
/db_xref="GI:157825231"
/db_xref="GeneID:5645670"
/translation="MRVLLIEDELEMANLIELTLASEGIVCDKASVGVEGLRIGKVCG
YDLVILDIMLPDINGFEILLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKP
FVREELIARIKAIVRRSKGHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILEL
LILRRGTILTKEMFLNHLYSSVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRG
YMLKEYDELQQKEILAQGA"
misc_feature 92212..92880
/locus_tag="A1C_00550"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 92221..92559
/locus_tag="A1C_00550"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(92230..92235,92362..92364,92386..92388,92446..92448,
92503..92505,92512..92517)
/locus_tag="A1C_00550"
/note="active site"
/db_xref="CDD:29071"
misc_feature 92362..92364
/locus_tag="A1C_00550"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(92371..92376,92380..92388)
/locus_tag="A1C_00550"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 92512..92520
/locus_tag="A1C_00550"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 92590..92874
/locus_tag="A1C_00550"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(92662..92664,92719..92724,92776..92778,92785..92787,
92809..92814,92848..92850,92863..92865)
/locus_tag="A1C_00550"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 92929..93750
/gene="queF"
/locus_tag="A1C_00555"
/db_xref="GeneID:5645671"
CDS 92929..93750
/gene="queF"
/locus_tag="A1C_00555"
/note="catalyzes the NADPH-dependent reduction of
7-cyano-7-deazaguanine (preQ0) to
7-aminomethyl-7-deazaguanine (preQ1) in queuosine
biosynthesis"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_001492952.1"
/db_xref="GI:157825232"
/db_xref="GeneID:5645671"
/translation="MPLSTSLLGKTSTYKDSYDATLLFKIPRINNRNALGINSNNLPF
YGVDIWNTYELSCINKKGKPWVGVGTFYIPTDSENIVESKSFKLYLNSFNNFVVESVE
ELERIILQDLSNVTHAKVTGRIFPINTKIAFGVPSGKNIDALDIVCNNYGPPDNSLVE
YEEVLVEEEINSNLLKSNCLVTGQPDWGSIVIKYKGKKLKHDSFLKYLISFRNYHEFA
EQCAERIFTDIKNAIKPDFLSLYIVYTRRGGIDICPYRSTDKSYSLPSDKRLIRQ"
misc_feature 92932..93747
/gene="queF"
/locus_tag="A1C_00555"
/note="7-cyano-7-deazaguanine reductase; Provisional;
Region: queF; PRK11792"
/db_xref="CDD:183317"
misc_feature <93142..>93285
/gene="queF"
/locus_tag="A1C_00555"
/note="Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold;
cl00263"
/db_xref="CDD:212183"
misc_feature 93334..93747
/gene="queF"
/locus_tag="A1C_00555"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:31123"
gene complement(94039..94644)
/locus_tag="A1C_00560"
/db_xref="GeneID:5645845"
CDS complement(94039..94644)
/locus_tag="A1C_00560"
/note="COG3820 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492953.1"
/db_xref="GI:157825233"
/db_xref="GeneID:5645845"
/translation="MNSQKTLPLLPKATAMWLIENTSLTFKQIADFCGIHEFEIKGMA
DGEVAQSIKGLNPIANGQLTLEEIERCSKDSNANLQISYSPADELMKNQKKQHAKYTP
IARRQDKPDAIYWLLSNYPNIQDHQIIKLIGTTKATIDAIRTRSHWNMNSIRPRDPVL
LGICSQIDLNKIVESLQGYTKNPMKESSNYTNFYPAKSLLT"
misc_feature complement(<94078..94635)
/locus_tag="A1C_00560"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3820"
/db_xref="CDD:33613"
gene complement(94698..96095)
/locus_tag="A1C_00565"
/db_xref="GeneID:5645846"
CDS complement(94698..96095)
/locus_tag="A1C_00565"
/note="COG1282 NAD/NADP transhydrogenase beta subunit"
/codon_start=1
/transl_table=11
/product="NAD(p) transhydrogenase subunit beta"
/protein_id="YP_001492954.1"
/db_xref="GI:157825234"
/db_xref="GeneID:5645846"
/translation="MSLQIIQLLYLVAAVCFILSLKFLSSQKQARLGTTIGTLGMVIA
VGVTFFLPDFTHKLPIIATILLGAIIGRIIALKISMTAIPQLVAGFHSFVGLAAVFVA
YSTILAPENFSIGIAGSLTINSLIEISVGVSIGALTFSGSVIAFLKLQGLMKSSPLKF
YGQQYICLLTAIILVILVISFIRSENIFLFNLIVFLSLLIGVLLIIPVGGADMPVILS
MLNSYSGFAAAGIGFTLSNSLLIITGALVGSSGAILSHIMCKAMNRSLIKVIFGAFLP
TPTGLHNDIDDDKIVKTSCPEDAAHLLLNASSVIIVPGYGMAVAQSQHIIKEMVDILE
CSDINIRFAVHPVAGRMPGHMNVLLAEANIDYDKVLELEAINRDFATTDVVLVIGAND
VTNPAAKNDPNSPIYGMPVLDAEKARTILFIKRSMASGYAGIENELFYHDNTFMLFGD
AKKVVEEIVKFLNED"
misc_feature complement(94710..96095)
/locus_tag="A1C_00565"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; COG1282"
/db_xref="CDD:31473"
misc_feature complement(94710..96086)
/locus_tag="A1C_00565"
/note="NAD(P) transhydrogenase beta subunit; Region: PNTB;
pfam02233"
/db_xref="CDD:145408"
gene complement(96288..97022)
/locus_tag="A1C_00570"
/db_xref="GeneID:5645847"
CDS complement(96288..97022)
/locus_tag="A1C_00570"
/note="COG3047 Outer membrane protein W"
/codon_start=1
/transl_table=11
/product="OmpW family outer-membrane protein"
/protein_id="YP_001492955.1"
/db_xref="GI:157825235"
/db_xref="GeneID:5645847"
/translation="MLRIVQKLGIILFVSSISINSFAKIMYDDVDSAPDYDSTPYYEN
EGNLVFKMRLGGVFSSAKQKVLPTPTSPQPVPVGEVAKNGYGGDASTTIFFNNYLATE
LSLGFNVLRTKYTSLASVAHNYSVDNVKLGKHKPIYMIPATVTGQFHIAPYGGIRPYI
GIGYHGSYMLTQATGLKIRNGYGAVGQIGVDFYAKDETLINIDVRQFFLNPKLEYKPN
LVGTKTITSKVKLNPLIVSIGIGFTF"
misc_feature complement(96291..96974)
/locus_tag="A1C_00570"
/note="Outer membrane protein W [Cell envelope biogenesis,
outer membrane]; Region: OmpW; COG3047"
/db_xref="CDD:32861"
gene 97178..98062
/locus_tag="A1C_00575"
/db_xref="GeneID:5645848"
CDS 97178..98062
/locus_tag="A1C_00575"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine transporter"
/protein_id="YP_001492956.1"
/db_xref="GI:157825236"
/db_xref="GeneID:5645848"
/translation="MNDALKTYLTGIGWFLLSLASSSANDVMSKYLGTRLHSFEVAFF
RFFFSSIVLLPFVVYYSKNTLKTSRPFVHILRGLLLFFGMTSWTYGLTIAPVTTATVV
SFSIPLFTLTLAVFFLNENIIWQRWVVTVVGFIGLVVTLKPHAQDFNPEILYFVLAAI
SFAMLDIINKKFIIKESMISMLFYSAIVTAIVSLPVASQYWLTPSGFELALLFVLGSS
GSLILFFLLKAFSMVDATATAPYRYLELVISAITAYFIFNEFPDKNTLHGAVIIIPAT
LFIIYSEKKAMSRKHESQ"
misc_feature <97328..97558
/locus_tag="A1C_00575"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 97655..98020
/locus_tag="A1C_00575"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene 98049..99305
/locus_tag="A1C_00580"
/db_xref="GeneID:5645849"
CDS 98049..99305
/locus_tag="A1C_00580"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter"
/protein_id="YP_001492957.1"
/db_xref="GI:157825237"
/db_xref="GeneID:5645849"
/translation="MNRSKLVFSSGIANTFEWYDYVLFGYFAPIIGAKFFPNYDANTA
LLQAFLVFAIGYLARPLGGIFFGVIGDRLGRKVALTSALFCMSSPTVLIGILPTYHTI
GITATILMICVRILQGLSMGGALTGSISFVIEHTSHKHRGFTGSISMSSICSGLLLGS
FVSYIVKNILTASQFDSFGWRIPFLLGFFILFAAFYIKKNTHETPDFKNLREQKKILQ
SPLKRVITNHWFDILISIFINAPGSIIFYLTTIYLVSFLKISRNFTENEVNSFASVCY
VIMIAVTLLSGYLSDIIGRRKIFVINLIIIIVTTPFLFHNFESGDFTSVIISQFILAI
LAASYIGPEPALQAEFYPTNIRNTALSISYNTATSIFGGTTPLVFEYLVQKTGNVTSA
IYYVILSCIFALIALSFYKNRSLDTI"
misc_feature 98067..99278
/locus_tag="A1C_00580"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 98088..99260
/locus_tag="A1C_00580"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(98109..98111,98118..98126,98130..98135,98202..98204,
98211..98216,98223..98225,98235..98240,98244..98249,
98409..98414,98421..98426,98433..98438,98445..98447,
98481..98486,98493..98498,98514..98516,98775..98777,
98784..98789,98796..98801,98808..98810,98850..98852,
98862..98864,98874..98876,98883..98885,98895..98897,
99045..99047,99054..99059,99066..99068,99078..99083,
99090..99092,99123..99128,99138..99143,99150..99155,
99162..99164)
/locus_tag="A1C_00580"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(98213..98392)
/gene="secG"
/locus_tag="A1C_00585"
/db_xref="GeneID:5645850"
CDS complement(98213..98392)
/gene="secG"
/locus_tag="A1C_00585"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_001492958.1"
/db_xref="GI:157825238"
/db_xref="GeneID:5645850"
/translation="MRTQIINIVAVIPIVWYVGNIPINTVGEDMQNNALVKATLRPNL
SPITPKNMPPNGLAK"
gene 99721..99795
/locus_tag="A1C_00590"
/db_xref="GeneID:5645851"
CDS 99721..99795
/locus_tag="A1C_00590"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492959.1"
/db_xref="GI:157825239"
/db_xref="GeneID:5645851"
/translation="MYANETTAASSDEVHTGEANEKLE"
gene 99887..99961
/locus_tag="A1C_t06891"
/db_xref="GeneID:5645319"
tRNA 99887..99961
/locus_tag="A1C_t06891"
/product="tRNA-Thr"
/db_xref="GeneID:5645319"
gene 99977..100279
/gene="secG"
/locus_tag="A1C_00595"
/db_xref="GeneID:5645320"
CDS 99977..100279
/gene="secG"
/locus_tag="A1C_00595"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_001492960.1"
/db_xref="GI:157825240"
/db_xref="GeneID:5645320"
/translation="MINILLFVHITIAILLIIVILMQRSGSDGISSISGGNNMGVVSA
KTVSNFLTKSTIILTTLFLINAIVLANLSSKKKSDLVSKINEIEENQAENSLPIAK"
misc_feature 99977..100189
/gene="secG"
/locus_tag="A1C_00595"
/note="Preprotein translocase subunit SecG [Intracellular
trafficking and secretion]; Region: SecG; COG1314"
/db_xref="CDD:224233"
gene 100596..101300
/locus_tag="A1C_00600"
/db_xref="GeneID:5645321"
CDS 100596..101300
/locus_tag="A1C_00600"
/note="COG1738 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492961.1"
/db_xref="GI:157825241"
/db_xref="GeneID:5645321"
/translation="MTIIHTIILAMSIEFNIKGKFYVILCTFFTVLIIVGNLIYQKFV
YLNIFNFYILELSIGAIFYPLTFLLTDLIAEFYGKARANFCVKLAIIFNIIVVLIISL
MDKLEATNWSKVDNITFNQVFGSCYISFLASTFACYIAQLVDINIYLWIRKITQGKYL
WIRNNFSTAISLFIDTFIVIGIMSLFNIVPYDQLRHLVLNSYSFKLFFTVFSTPIFYL
AVWLIRLSIKRFDKSG"
misc_feature 100764..101210
/locus_tag="A1C_00600"
/note="Uncharacterized ACR, YhhQ family COG1738; Region:
DUF165; pfam02592"
/db_xref="CDD:190356"
gene complement(101331..106664)
/locus_tag="A1C_00605"
/db_xref="GeneID:5645322"
CDS complement(101331..106664)
/locus_tag="A1C_00605"
/note="COG1196 Chromosome segregation ATPases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492962.1"
/db_xref="GI:157825242"
/db_xref="GeneID:5645322"
/translation="MSITGKLKSVLLTYSFIISISINLFTTGSEAAGNPPPPPPPPPL
PPPGWTYQAASSNNTGSGGQTTQPESSKSTGSSKKSSSSTKIPEVHPPTTELGKRYAK
LIDIHDRKQNLIIQFPKVIAYLIRQELTLQNLDTSVHNIITLFNKREDSILDNAKKIY
QEFINDPYIAQFTNKNKQTGDFLDNKLFEESHEEAILRLLSLEQLDAQRKQDILSQQG
NILEQLKFIKENSEILGSYGKTESTNISKKLPEELPKILSQQGDILGQLRFIKENSEI
LGAYGKTVSTDISKKLPKELPKILSQQGDILGQLKFINDNSEILLCGHSKAILKDKLK
ELSKQLDTISSNQLVGFILDENKINTNLKNVPFSAKKVREQVNNLNNEILEKIFLHDD
GTITEQDLTRILQKYKETDLIKNLTKAIIYIDGNESNETVSKTLAKGLENTTPEQRGL
IVDVLTHNTRIRKALITKIDRERRQERNQKLNKNTEGDPFVDALKKALVQRKSDPETI
QKELERRKHETPRDLNAWDRVRQNMHNPNNQNDNPNTHDENNKGWKEDNQNAQDANNN
DVDRITKAKNELEQAVNAATRKFSEMSSLLKDNTIKNATACQGYLKGAEDQLALAKEK
GQELIENSVQAFKIIPKKSQDNMDDNWQNYLSPKEIIALNALSDETNTLKSKKNKAGK
FTSTADASQFKAKQQKYHTLLSELQKIGIAKQQEKLVKDYVDEMLTNAKKAVGKIETT
LEYLNKKKENKNDNAESSPLISKEIFEAREQLKKAEQKLERIKFKNTIAKQRKADSSD
EDSDDEWDDDYDKKATKQKEELANKQKQELEDAQEEIKQAKKNLENAEVRDAERKQQE
AAAKRQEELKRKQDEVNHKIVEDEVERKAENAQAERLEDMDAMFKNAKDEAEHKEKAN
RQRQEELKRKQDEVNRKIVEDEVKRKAENVQAERLEDMDAVFKNAKDEAEHKEKANRQ
RQEELKRKQDEVNRKIVEDEVERKAENAQAERLEDMDAMFKNAKDEAEYKEKANRQRQ
DEVNRKIVEDEVERKAENAQAERLEDMDAMFKNAKDEAEHKEKANRQRQEELKRKQDE
VNHKIVEDEVERKAENAQAERLEDMDAMFKNAKDEAEHKEKANRQRQEELKRKQDEVN
RKIVEDEVKRKAENVQAERLEDMDAVFKNAKDEAEHKEKANRQRQEELKRKQDEVNRK
IVEDEVERKAENAQAERLEDMAAMFKNAKDEAEYKEKANRQRQDEVNRKIVEDEVERK
AENAQAERLEDMDAMFKNAKDEAEHKEKANRQRQEELKRKQDEVNCKMVEDEVERKAE
NAEDEYLEDMAAMFKNAEDEAEYKEKANRQRQDEVNRKMVEDEVERKAENAEDEAEHK
ENENRQRQEEQNCQEQERKRLAAEEDEQTEKTTRKQEETEEEKLKNDIALEGEDEDIG
VSFKTEAIVEQDEAAQRQQVSDDTSRKVAILVKATSTLHKPVHHNILSDRLKVSAIAT
GDEEPTIARGVWISGLYGMNKQGTWKNIPKYQGRTTGITIGADIEFINSHDVIGIAYS
RLESKIKYNEKLGKTAVNVHLFSIYGLKELNKGFSLQAITSYGHNYIKNKSKSINNIV
GKYQNNNFSFQTLLNYKYRTKDDLHFIPNIGFKYDYSRASSYKEYNVDIENLVIQKKS
NQLFESSIGGKIVFKPIATISNVVLTPSLYGNIERHFNHKNTKVNAKATFKGQILQET
IIIPKQPKLGYNIGSNMLMSRKNINVLLEYNYYTHRKYQSHQGLVKLKVNL"
misc_feature complement(103164..104198)
/locus_tag="A1C_00605"
/note="Tumour suppressor, Mitostatin; Region: Trichoplein;
pfam13868"
/db_xref="CDD:206039"
misc_feature complement(102609..103559)
/locus_tag="A1C_00605"
/note="Tumour suppressor, Mitostatin; Region: Trichoplein;
pfam13868"
/db_xref="CDD:206039"
misc_feature complement(101370..102170)
/locus_tag="A1C_00605"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene complement(107146..112578)
/locus_tag="A1C_00610"
/db_xref="GeneID:5645323"
CDS complement(107146..112578)
/locus_tag="A1C_00610"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492963.1"
/db_xref="GI:157825243"
/db_xref="GeneID:5645323"
/translation="MSTCLFTSSFLSTSTRAASFKDLVSKTPTWQKHNAKQQQNIWKD
FTPNEKIKKWQEANLIPSFTQAQDDLGIQYKETDLSSFLDNTRHKARQARAEILLYIQ
RIKQQDFDTKKQEYIKQGIVPTYMEAATILGISYDPSKIYDNVEKDQNVRRAEKDKKA
LIDLYISSIKRDIKYRHYVNNHIIPEIKEVKTALNMDKDDAESFVLSIRTEIMENAKE
QYIADRHIPTEKELKNRFGISRDDNRDAYIKSIRLKVMDKEKPQYIAANSIPTEKELE
QKFGCDKGEATNYIASIATQKMLNKKAYYIDNNIIPAVEELKQEFRIGKIKANSYIQQ
ITDGINANQLLNNNNTTKPSTVGSTKKIETKSDNWYMSNQGINTTETSSVVTTGRKEK
QSYYFDPISTFKAHFNNKENNGNLTQPQHNINRIIQQEENIEEFKNLIKTDPIAALNL
TVDSSYKKEAVTSILSDFNDDTIQRVLFSDDMGQLDFKTNIDVKNRPILKALLENSSS
EEKTKFAERIQDYATRNISNSQFEEKARLDLIKLAASKDRSLVEKFLALQLELKNKMQ
SHIVKSEYILTPKIVAEINIELKNQGLIIDSLTKDNMIKLAKEVNKQALNSAIKVILS
DNNTLSNETNKILGLAVGNNANNLAQTQSGMPNPPPLPLSGGIPNPPPLPLSGGIPNP
PPLPLSGGIPNPPPLPLNGSMPPPPHLNSQGFISNSNNLDLNKLQAEYSHIHSLYTQF
ILNTTVQPKVLPQPTASSATSTERSEPETAYAKLYVEYRTETGGKKAYDLQDQLIKRQ
ADLTNVIRQILTTSYANQGADEKTLVNVFSISTPEIEAKAKDVFNKLVQDPYIQYITV
NGKKATTSEDIIKNLFNEDTDDAVKRILLSSCKISEELKKPIKHELNQLKLMREFESK
TTLFEQLEFAYANAKNLDQDIFGNKVEELINNPKTLTTAQQATFLITEDTNLRKTIDT
DQAQAKLDDLRKAILSTIKLEELIKANLPHNEFIAIVKEKEPELLKEFLKANTIKLEG
NNNLDQLRLVLPSFTCMSDEQLRVLASKLNMTIILNALKEYSQVKAKKHINTGNMPPP
PPPPPSGLKDAELAYLTTLGITKDWISRIARLNVKTSTSTFKTTPKIYNFSSDIAVRY
KEFALSGQKSAGHKAKYSDADLFQKAIVESVAFEHSKNLSKVHQNNTYFAKIQEAIDT
MHSSFIGPRTEIGQEIHNIYTSKLLALTKDKEFIKYVEDDIILSKKLTEAFTSADSDF
IGPRTEIGQEVHNIYTQQLAKYPEETVKEAFNTANSDFIGPRTEIGQEVHNIYKSKLL
ELAKDKELFLCVEQLLAESAELEQKYGTDLQSENNNQEKKVGRLDPKQLRLFLQANES
ANDESSTKDNTQPEDSNKKSEEFDSETALSPRLLSSNDSKNDKSSDNIDLRSSDEEDK
GYETDEELKESNNTTKEESQKDIALESEDEAIDVSFTTEAIAEQDEATQRQQVSDDTS
RKVAILAKATSTLHKPVHYNILSDRLKVSAIGAGDEEPIIARGVWISGLYGMNKQGTW
KNIPKYQGRTTGITIGADVEFINSHDVIGIAYSRLESKIKYNKKLGTIAVNGHLFSIY
GLKELIKDLSLHAITSYGHNYVKNKSKNINNIIGKYQNNNLSFESLLNYKYHTKYDLH
FIPNIGFKYDYSRASNYKEYNVDIENLMIQKKSNQLFESSIGGKIVFKPIATISNVVL
TPSLYGNIERHFNHKNTKVNAKATFKGQILQETIIIPKQPKLGYNIGSNMLMSRKNIN
VLLEYNYYTHRKYQSHQGLVKLKVNL"
misc_feature complement(107185..107976)
/locus_tag="A1C_00610"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 112799..114178
/gene="cysS"
/locus_tag="A1C_00615"
/db_xref="GeneID:5645324"
CDS 112799..114178
/gene="cysS"
/locus_tag="A1C_00615"
/EC_number="6.1.1.16"
/note="catalyzes a two-step reaction; charges a cysteine
by linking its carboxyl group to the alpha-phosphate of
ATP then transfers the aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_001492964.1"
/db_xref="GI:157825244"
/db_xref="GeneID:5645324"
/translation="MQIQLHLYNTLSRTKEVFNPQDQANIKMYVCGPTVYDNPHIGNS
RSVVVYDLLYRIVIKIFGSRAVKYVRNITDVDDKIIDRAELLGITINELTDKVTQEFH
TNMAYLGCMLPNIEPKATEHIDVMIEIIERLIAKDHAYITDNHVYFDVLSAPNYTELS
NRNLEEMFEGVRIEKSKTKNHPQDFVLWKPAKPNESTNMNFESPWGFGRPGWHIECSA
MSYKYLGENFDIHGGGADLVFPHHTNEIAQSRCAFPDSTYAKYWVHNGFLTVNGEKMS
KSLGNFITVRDLMDKDISGEVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIEN
INVQKIDLPHNFMQSLLDDMNTPLAVKIINDYAKGVFIAKTEKERQLNASVIITCANF
IGLMNQTPHEWFNSGVDSLYINELVNKRLEAKKQKNWLLADQIRNQLLEGKIILEDKS
DGTTIWRKE"
misc_feature 112808..114175
/gene="cysS"
/locus_tag="A1C_00615"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature 112814..>113179
/gene="cysS"
/locus_tag="A1C_00615"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(112889..112900,112916..112918,112922..112927,
112934..112939,113009..113011,113015..113017,
113156..113158)
/gene="cysS"
/locus_tag="A1C_00615"
/note="active site"
/db_xref="CDD:173899"
misc_feature 112916..112927
/gene="cysS"
/locus_tag="A1C_00615"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <113432..113740
/gene="cysS"
/locus_tag="A1C_00615"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 113618..113632
/gene="cysS"
/locus_tag="A1C_00615"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 113741..114172
/gene="cysS"
/locus_tag="A1C_00615"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature order(113744..113746,113756..113758,113765..113767,
113774..113776,113786..113791,113795..113800,
113879..113881,113900..113902,113909..113911,
113918..113920)
/gene="cysS"
/locus_tag="A1C_00615"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(113774..113776,113783..113788,113795..113800,
113918..113920)
/gene="cysS"
/locus_tag="A1C_00615"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 114515..115402
/gene="rpsB"
/locus_tag="A1C_00620"
/db_xref="GeneID:5645687"
CDS 114515..115402
/gene="rpsB"
/locus_tag="A1C_00620"
/note="one of the last subunits in the assembly of the 30S
subunit; absence of S2 does not inhibit assembly but
results in an inactive subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S2"
/protein_id="YP_001492965.1"
/db_xref="GI:157825245"
/db_xref="GeneID:5645687"
/translation="MSNISSVNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHII
DLRQSAALMSVALNAIYETVKKDGKVLFVSTKIQASDIIAEYAEKCGQYYVNHRWLGG
MLTNWKTIAGSIEKLNKLEKTLENAEALIGYTKKEILDMSRKKEKLLLSLAGIRNLNS
KPDLLVVIDTNKEHIAINEAVKLNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYC
RLFADAALQGLEESMKASGVDMGAMHEHTDNALISKNVSKLKQAKKFSKTKNIDEETN
TEFEQALNDTDENKNADNA"
misc_feature 114548..115195
/gene="rpsB"
/locus_tag="A1C_00620"
/note="Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli RPS2
is essential for the binding of...; Region: RPS2; cd01425"
/db_xref="CDD:100106"
misc_feature order(114596..114601,114626..114634,114806..114808,
114812..114820,114827..114832,115049..115051,
115058..115060)
/gene="rpsB"
/locus_tag="A1C_00620"
/note="rRNA interaction site [nucleotide binding]; other
site"
/db_xref="CDD:100106"
misc_feature order(115055..115060,115064..115066,115106..115117)
/gene="rpsB"
/locus_tag="A1C_00620"
/note="S8 interaction site; other site"
/db_xref="CDD:100106"
misc_feature 115160..115177
/gene="rpsB"
/locus_tag="A1C_00620"
/note="putative laminin-1 binding site; other site"
/db_xref="CDD:100106"
gene 115646..116575
/gene="tsf"
/locus_tag="A1C_00625"
/db_xref="GeneID:5645688"
CDS 115646..116575
/gene="tsf"
/locus_tag="A1C_00625"
/note="EF-Ts; functions during elongation stage of protein
translation; forms a dimer; associates with EF-Tu-GDP
complex and promotes exchange of GDP to GTP resulting in
regeneration of the active form of EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Ts"
/protein_id="YP_001492966.1"
/db_xref="GI:157825246"
/db_xref="GeneID:5645688"
/translation="MSEINISAAAVKELREKTGAGMMDCKKALIETSGNFEEAIDFLR
KKGLAVAAKKAGRIAAEGLTAVKVDGLTGVVVEVNSETDFVARNARFQDLAKDIANLA
VIAKNIDTLKTSKMQSGKSVEEEIIANIATIGENLALRRMDILEISEGAIGSYVHNEV
VPNLGKISVLVGLVSNAKDKAKLEALAKQIAVHVAGNNPQSIDDSSLDQALVERERKV
FFEKSKEEGKPDNIIEKMVEGRIRKFFSEVVLLQQNFLFDPKLTVAEVIKNAEQELGA
EIKIAKFIRYELGEGIEHEEKNFVDEVAAITRS"
misc_feature 115658..116560
/gene="tsf"
/locus_tag="A1C_00625"
/note="elongation factor Ts; Provisional; Region: tsf;
PRK09377"
/db_xref="CDD:181810"
misc_feature 115661..115771
/gene="tsf"
/locus_tag="A1C_00625"
/note="UBA/TS-N domain; Region: UBA; pfam00627"
/db_xref="CDD:201355"
misc_feature 115826..>115942
/gene="tsf"
/locus_tag="A1C_00625"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
misc_feature 116087..116515
/gene="tsf"
/locus_tag="A1C_00625"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
gene complement(117140..117250)
/locus_tag="A1C_00630"
/db_xref="GeneID:5645689"
CDS complement(117140..117250)
/locus_tag="A1C_00630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492967.1"
/db_xref="GI:157825247"
/db_xref="GeneID:5645689"
/translation="MLHDTTQDTGETFDLSLVLKDSDGENFDSAHLKDKL"
gene complement(117658..117897)
/locus_tag="A1C_00635"
/db_xref="GeneID:5645690"
CDS complement(117658..117897)
/locus_tag="A1C_00635"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492968.1"
/db_xref="GI:157825248"
/db_xref="GeneID:5645690"
/translation="MQDPDTIRQIVNKQATDQIEARERRQKYKNSSDSGEGEFLGAVI
IITAYVFYKAVEVVLKVTTADSKILVNAYKINTGK"
gene complement(117994..119250)
/locus_tag="A1C_00640"
/db_xref="GeneID:5645691"
CDS complement(117994..119250)
/locus_tag="A1C_00640"
/note="catalyzes the transfer of
2-keto-3-deoxy-D-manno-octulosonic acid to lipid A"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_001492969.1"
/db_xref="GI:157825249"
/db_xref="GeneID:5645691"
/translation="MMLLYYALSFILLPVYFIIIIIRLLIGKEDIRRIQERFAIGKYR
QDNSFLIWIHAASVGESMAALTLIYNISKRYPKIRFLVTSWTNSSAKILTAKLPKIAV
HQFLPIDNIIFTRKFLKNWQPNLGIFIESELWPCTINEGARQFKLLLVNARISDKSFK
AWLKRKSFFQLIIKHFSKIIVQSERDLQKFNELGVSDAINLGNIKFANEKLPVNQEEL
SKLISHLDNRQVLVFASTHHEDEEVILPIIKNLQEQCLDCYIILIPRHPERVKSIIDN
CKSHNLSATAKSQNDLPVLSNDIYIVDRFGEMGLFFSVATISFIGGSFKQGGHNILEA
AYFSNCIIFGPDMSKNTDIAKGVLQNEAAIQIKNGEDLLTKLTYLLNPNNSLELKAYR
EKAFKFVENNQKVLDEYLKVITKFLP"
misc_feature complement(117997..119250)
/locus_tag="A1C_00640"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(118624..119157)
/locus_tag="A1C_00640"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
gene complement(119247..119903)
/locus_tag="A1C_00645"
/db_xref="GeneID:5645692"
CDS complement(119247..119903)
/locus_tag="A1C_00645"
/note="COG2121 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492970.1"
/db_xref="GI:157825250"
/db_xref="GeneID:5645692"
/translation="MRKVFKKFLKNNKYVLSIITIILYWYLLFVYFTSKQKFIFYDNG
NKEKFLNEQGVIFAFWHNMLALSPAMFIGHRNIYALISPHLDGAILNNLVEKFGCRVI
VGSTNRNPIGALRNIISKLSQGANIIVTPDGPKGPIYKVNSGITEIAYRYNKKLMPIV
SSTSRCFRLKSWDKLIIPLPFGIIKIIVGSPLELTNDKIQNHISLEQQLTSLTESLKK
"
misc_feature complement(119256..119825)
/locus_tag="A1C_00645"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature complement(order(119499..119507,119652..119663,
119706..119708,119712..119714,119721..119723))
/locus_tag="A1C_00645"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene complement(120021..121220)
/locus_tag="A1C_00650"
/db_xref="GeneID:5645693"
CDS complement(120021..121220)
/locus_tag="A1C_00650"
/EC_number="2.6.1.1"
/note="catalyzes the formation of oxalozcetate and
L-glutamate from L-aspartate and 2-oxoglutarate"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_001492971.1"
/db_xref="GI:157825251"
/db_xref="GeneID:5645693"
/translation="MSIISTRLNSIKPSPTLAVVKKTLELKKSGIDIIALGAGEPDFD
TPDNIKEAAIKAIQDGFTKYTNVEGMPLLKQAIKDKFKRENSIDYELDEIIVSTGGKQ
VIYNLFMASLDKGHEVIIPAPYWVSYPDIVALSTGTPVFVNCGIEHNFKLSAEALERS
ITDKTKWLIINSPSNPTGASYNFEELENIAKVLRKYPHVNVMSDDIYEHIIFDDFKFY
TLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGVGSKTLIKAMTIIQSQSTSNPCSIS
QMAAIEALNGPQDYIKPNALNFQKKRDFALSILKRVKYFECYKPEGAFYLFVKCDKIL
GHKTRSGKIISNSNDFAEYLLEEAKVAVVPGIAFGLEGYFRISYSTSMEEIEEACMRI
ERACNAL"
misc_feature complement(120024..121220)
/locus_tag="A1C_00650"
/note="aspartate aminotransferase; Provisional; Region:
PRK05764"
/db_xref="CDD:180244"
misc_feature complement(120039..121121)
/locus_tag="A1C_00650"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(120480..120482,120504..120509,
120513..120515,120600..120602,120696..120698,
120846..120848,120918..120926))
/locus_tag="A1C_00650"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(120384..120386,120393..120395,
120480..120488,120621..120623,120816..120818,
120915..120917))
/locus_tag="A1C_00650"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(120504..120506)
/locus_tag="A1C_00650"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 121439..122443
/locus_tag="A1C_00655"
/db_xref="GeneID:5645284"
CDS 121439..122443
/locus_tag="A1C_00655"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492972.1"
/db_xref="GI:157825252"
/db_xref="GeneID:5645284"
/translation="MLGKIKEKIKPYCLTIINIPNFIKNKILEFRNYISDCKYKFSHL
AETNYQLGLDHLYRGNLNDALLRFKLVDKFFNPNDSKVYYQLGLVYFLKNNYRQAIEY
LEQSNEQYKAIFINFLKNYNDITEIPQEIWKKYHDLTAQYYPTIFNNDKNIHLPYRFV
NDTLKQISDLPDNYSILELGSNIGLVGYEIQKHFPESFTLTGVEISTLMNDLQETYYP
NTKIYDQIYNIAIDEFLKQNSNKFDIIFSFCGLSFTNNLIEYFNLIYSSLSEQGYFAL
CLPNAVKTQFSVKRKEFIFNLNEINNFLQKNNFTIFTSEEIILAENNKYSIIVCKKIT
"
misc_feature 121565..121756
/locus_tag="A1C_00655"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 121676..>121756
/locus_tag="A1C_00655"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature 121907..>122281
/locus_tag="A1C_00655"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 121952..122275
/locus_tag="A1C_00655"
/note="Methyltransferase domain; Region: Methyltransf_18;
pfam12847"
/db_xref="CDD:205104"
gene 122448..123203
/locus_tag="A1C_00660"
/db_xref="GeneID:5645285"
CDS 122448..123203
/locus_tag="A1C_00660"
/note="COG2853 Surface lipoprotein"
/codon_start=1
/transl_table=11
/product="VacJ lipoprotein precursor"
/protein_id="YP_001492973.1"
/db_xref="GI:157825253"
/db_xref="GeneID:5645285"
/translation="MRILIILFIILCSLFVRADFEYVDNEIYNYNGGRNENGCLDVYD
PYEKFNRKVFAFNSVVDHIILRPLAIGYKNITNDYVKARVNSFVSNVDTPLTAVNYGL
QLNYDKTMKSVWRFLINTTLGIGGLFDVAGKVGLSSERQTFGSTLAYYGVAPGPYLVL
PIIGSTNARDMTDSVVTNYALNPLMYYTHHDFDLGVLAVSKINDRYVVLPFSDYVMKN
STDPYVAIRSALHRVREASVQYPENFKCPKPKN"
misc_feature 122481..123197
/locus_tag="A1C_00660"
/note="Surface lipoprotein [Cell envelope biogenesis,
outer membrane]; Region: VacJ; COG2853"
/db_xref="CDD:32681"
gene 123223..123822
/locus_tag="A1C_00665"
/db_xref="GeneID:5645286"
CDS 123223..123822
/locus_tag="A1C_00665"
/note="COG2854 ABC-type transport system involved in
resistance to organic solvents, auxiliary component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492974.1"
/db_xref="GI:157825254"
/db_xref="GeneID:5645286"
/translation="MQKIITGLCLLVMTFSAYSSEKVPAGLNDYVINLVNEASNILND
SKLSERVKIAKARELMSQNLDFDWMAKYTLGRNGIKTLSGEQVQEFIKVYSKYVTKSY
TDLIKDYKGERPKIVGVRPLSSTDFMVAMNIISNKEQDPIKVEYLVREMKGNGKDVFK
VSDIITEGVSLIGAQQDEFTDTLKNQGFESLIQKLESRS"
misc_feature 123223..123819
/locus_tag="A1C_00665"
/note="ABC-type transport system involved in resistance to
organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2D; COG2854"
/db_xref="CDD:32682"
gene complement(124078..124305)
/locus_tag="A1C_00670"
/db_xref="GeneID:5645287"
CDS complement(124078..124305)
/locus_tag="A1C_00670"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001492975.1"
/db_xref="GI:157825255"
/db_xref="GeneID:5645287"
/translation="MQEFAYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGA
TINDDLFLIDYTSIYNISAYSRELFSISCYS"
misc_feature complement(124183..>124302)
/locus_tag="A1C_00670"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene 124829..124984
/locus_tag="A1C_00675"
/db_xref="GeneID:5645288"
CDS 124829..124984
/locus_tag="A1C_00675"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492976.1"
/db_xref="GI:157825256"
/db_xref="GeneID:5645288"
/translation="MSNDAINIIEKYILSGEQKGKTYLTLLASKDFGKACEMLIPRTS
DDNIYVY"
gene 124962..125144
/locus_tag="A1C_00680"
/db_xref="GeneID:5645289"
CDS 124962..125144
/locus_tag="A1C_00680"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492977.1"
/db_xref="GI:157825257"
/db_xref="GeneID:5645289"
/translation="MIIFMFIDRYSENTLITAAKKGMKTVCKMLISRMPLELINHINN
DGDTASKHIKQRYRKF"
misc_feature <124983..125108
/locus_tag="A1C_00680"
/note="Ankyrin repeats (many copies); Region: Ank_5;
pfam13857"
/db_xref="CDD:206028"
gene complement(125514..125651)
/locus_tag="A1C_00685"
/db_xref="GeneID:5645290"
CDS complement(125514..125651)
/locus_tag="A1C_00685"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492978.1"
/db_xref="GI:157825258"
/db_xref="GeneID:5645290"
/translation="MAIIEPYLDFIIKDKNLLREIYPNGINKELKIELILDKKPYTSY
S"
gene complement(125999..126250)
/locus_tag="A1C_00690"
/db_xref="GeneID:5645473"
CDS complement(125999..126250)
/locus_tag="A1C_00690"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase superfamily esterase"
/protein_id="YP_001492979.1"
/db_xref="GI:157825259"
/db_xref="GeneID:5645473"
/translation="MDQLYELAEVLTSSDLISCFQSHDSTVFIDDHNISALSFDITAE
QKEALINSCYSTTCDYVTRMENIMLAGLAVNDSNDSLVL"
gene complement(126229..126399)
/locus_tag="A1C_00695"
/db_xref="GeneID:5645474"
CDS complement(126229..126399)
/locus_tag="A1C_00695"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase superfamily esterase"
/protein_id="YP_001492980.1"
/db_xref="GI:157825260"
/db_xref="GeneID:5645474"
/translation="MFDDKAAVRSLPQTGNKNYKTLGFKPINKEILEAYQNATEPKPF
LILLLLWINYMN"
gene complement(126589..127080)
/locus_tag="A1C_00700"
/db_xref="GeneID:5645475"
CDS complement(126589..127080)
/locus_tag="A1C_00700"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492981.1"
/db_xref="GI:157825261"
/db_xref="GeneID:5645475"
/translation="MSNNNRENIYKAFHCISEAANSAYSAINHFLALPNVFNKYPTFI
SYIFSKTAKLDSNITSIIQNGVIIYEISTTLISAVNTFYKDKKLVDEILKDGQNAINK
LIETTTYVSPIVADITTSYLVDPYKEEKALLFDLQIPNSTSDDCYKLSGTESVTLTEI
ECY"
gene complement(127170..128330)
/locus_tag="A1C_00705"
/db_xref="GeneID:5645476"
CDS complement(127170..128330)
/locus_tag="A1C_00705"
/note="in most organisms, only the N-terminal domain is
present in a single polypeptide; in some archaea this
domain is fused to a kinase domain; this gene is essential
for growth in Escherichia coli and Bacillus subtilis; the
secreted glycoprotease from Pasteurella haemolytica showed
specificity for O-sialoglycosylated proteins; the
Pyrococcus structure shows DNA-binding properties,
iron-binding, ATP-binding, and AP endonuclease activity"
/codon_start=1
/transl_table=11
/product="putative DNA-binding/iron metalloprotein/AP
endonuclease"
/protein_id="YP_001492982.1"
/db_xref="GI:157825262"
/db_xref="GeneID:5645476"
/translation="MIKILGIESSCDDTAVSIITENREILSNIIISQNTEHAVFGGVV
PEIAARSHLSNLDKALTNVLKESNTKLIEISAIAATSGPGLIGGVIVGSMFARSLSST
LKKPFIAINHLEGHALTARLTDNIPYPYLLLLASGGHCQFVAVLGLGKYKILGSTIDD
AVGETFDKVAKMLNLAFPGGPEIEQKAKLGDPHKYKFPKPIINSGNCNMSFSGLKTAV
RTLIMNLQEINYNECNHLESVRQDEVQEEFAQRTKVHEHRRKLQNSLVSSFLNDSVIN
DIAASFQFTIGEILSSKVQDAIRAYEQITNNFDKKNIIIAGGVAANKYLQEILSNCAK
TYGYQLIYPPIHLCTDNAAMIAYAGLERYNNKLFTPLNFCPKARWSLEDISK"
misc_feature complement(127176..128327)
/locus_tag="A1C_00705"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature complement(127743..128324)
/locus_tag="A1C_00705"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(127509..127625)
/locus_tag="A1C_00705"
/note="Rickettsial palindromic element RPE3 domain;
Region: RPE3; TIGR03775"
/db_xref="CDD:163487"
gene complement(128643..129836)
/locus_tag="A1C_00710"
/db_xref="GeneID:5645477"
CDS complement(128643..129836)
/locus_tag="A1C_00710"
/note="COG1398 Fatty-acid desaturase"
/codon_start=1
/transl_table=11
/product="Acyl-CoA desaturase 1"
/protein_id="YP_001492983.1"
/db_xref="GI:157825263"
/db_xref="GeneID:5645477"
/translation="MLSKLNKPALFALIFYPIFIISLVVKYSFNYGIGRTEVIFIIAS
YYINNITVGIGLHRLWSHNAYKINKCAEFVLIMLSAGTLQGPALSWASNHYKHHAKTD
TDQDPHSPLKFDSKVLGFLWSHIGWMLVGSGSYKSIDRITWAKHGKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVDGTIQSAYAGFVFMGLGRFLQQQATFCVNSLCHFAGSKKY
YKGTAGDIWWMALFLLGENWHNYHHAFPSDYRNGAKWYHLDVHKWIIFLMSKIGLASE
LERTTKVRIQAKMQETLSYLSEKQKQKLTLMQAKIDHLLENLCLKIKELEESSITIKG
QFKKSFVEIQESLKILAEQISSATQITEKPSEKLLKIVNKKIIDAEQSIYRLYNQFNT
LKVSS"
misc_feature complement(<129444..129737)
/locus_tag="A1C_00710"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
misc_feature complement(129045..129725)
/locus_tag="A1C_00710"
/note="Fatty acid desaturase; Region: FA_desaturase;
pfam00487"
/db_xref="CDD:201259"
misc_feature complement(order(129543..129548,129555..129557,
129651..129653,129666..129668))
/locus_tag="A1C_00710"
/note="Di-iron ligands [ion binding]; other site"
/db_xref="CDD:58171"
misc_feature complement(129006..>129302)
/locus_tag="A1C_00710"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
gene 130177..130353
/locus_tag="A1C_00715"
/db_xref="GeneID:5645478"
CDS 130177..130353
/locus_tag="A1C_00715"
/note="COG0462 Phosphoribosylpyrophosphate synthetase"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="YP_001492984.1"
/db_xref="GI:157825264"
/db_xref="GeneID:5645478"
/translation="MQQTQEAASRIILVMPYFSYARQDSINSQNIIPAKLIADFLEKL
EVNHVVTINLHSEK"
misc_feature <130198..130305
/locus_tag="A1C_00715"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
gene 130548..130682
/gene="alr"
/locus_tag="A1C_00720"
/db_xref="GeneID:5645479"
CDS 130548..130682
/gene="alr"
/locus_tag="A1C_00720"
/EC_number="5.1.1.1"
/note="COG0462 Phosphoribosylpyrophosphate synthetase"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001492985.1"
/db_xref="GI:157825265"
/db_xref="GeneID:5645479"
/translation="MILITGNVEGKNCILLDNIIDSVETIIKAAIFSKNMRLFRFVLL
"
misc_feature <130557..>130637
/gene="alr"
/locus_tag="A1C_00720"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
gene 130691..130849
/locus_tag="A1C_00725"
/db_xref="GeneID:5644890"
CDS 130691..130849
/locus_tag="A1C_00725"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492986.1"
/db_xref="GI:157825266"
/db_xref="GeneID:5644890"
/translation="MLAAGSKDQIENSIIDNIFVTDTIEVGDLPPKFRIIAVIPIIVK
VKELRTIL"
gene 130846..131913
/gene="alr"
/locus_tag="A1C_00730"
/db_xref="GeneID:5644891"
CDS 130846..131913
/gene="alr"
/locus_tag="A1C_00730"
/note="converts L-alanine to D-alanine which is used in
cell wall biosynthesis; binds one pyridoxal phosphate per
monomer; forms a homodimer"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_001492987.1"
/db_xref="GI:157825267"
/db_xref="GeneID:5644891"
/translation="MSLCTLEINISAIKNNYLLLQGICKTSLVGAAVKANGYGLGAVQ
ISKALIKENCRYFFVATSEEGVNLRKALGLDVDILVLNGVFEHDALELIEYNLTPVLN
NLKQIEIWQKFSNLKHRLLPCYLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYII
SHLAISEEIDNPYNLEQLNIFKAYLQYFPNVKASLANSGGIFLGQDYHFDLARPGAAL
YGLNPVMKNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNF
SNQGEVFINGRSVPIVGRISMDLINIDVTDLPPLDIFLGQEAEIIGNYCTPDKIASII
GTIGYEVLTSLGSRYKRIYIE"
misc_feature 130846..131907
/gene="alr"
/locus_tag="A1C_00730"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 130855..131907
/gene="alr"
/locus_tag="A1C_00730"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430"
/db_xref="CDD:143481"
misc_feature order(130939..130941,130945..130947,130957..130959,
131086..131088,131221..131223,131242..131244,
131329..131331,131434..131439,131482..131493,
131590..131592,131647..131649,131731..131736,
131860..131862)
/gene="alr"
/locus_tag="A1C_00730"
/note="active site"
/db_xref="CDD:143481"
misc_feature order(130939..130941,130945..130947,130957..130959,
131086..131088,131242..131244,131329..131331,
131434..131439,131482..131493,131860..131862)
/gene="alr"
/locus_tag="A1C_00730"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143481"
misc_feature order(130945..130950,131023..131025,131032..131037,
131149..131154,131236..131247,131329..131331,
131335..131337,131551..131562,131566..131568,
131578..131583,131587..131595,131632..131634,
131647..131649,131665..131667,131737..131742,
131848..131853,131860..131865,131887..131889)
/gene="alr"
/locus_tag="A1C_00730"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143481"
misc_feature order(130945..130947,130957..130959,131242..131244,
131329..131331,131590..131592,131647..131649,
131731..131736,131860..131862)
/gene="alr"
/locus_tag="A1C_00730"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143481"
misc_feature order(130945..130947,131590..131592)
/gene="alr"
/locus_tag="A1C_00730"
/note="catalytic residues [active]"
/db_xref="CDD:143481"
gene 132123..132902
/locus_tag="A1C_00735"
/db_xref="GeneID:5644892"
CDS 132123..132902
/locus_tag="A1C_00735"
/note="COG0767 ABC-type transport system involved in
resistance to organic solvents, permease component"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_001492988.1"
/db_xref="GI:157825268"
/db_xref="GeneID:5644892"
/translation="MLLNIANLVGKRTIKCAQSVGSFSLFSFAAVSSTIRPPLYLSLI
IRQLLFIGFHSLPVVAMTTFFSGAVLALQSYTGFSRFSAENSIATVVVLSLTRELGPV
LAGLMVSGRVGASIAAEIATMRVTEQVDALYTLSTDPIKYLVFPRVIATIVTMPCLVL
IGDIIGVMGGYLVGVYKLDFNSTAYLTSTLHYLEPIDVISGLVKAGVFGFIISIISCY
SGYYSGKGAKGVGRATTSAVVNSSIIILISNYLITELFFKV"
misc_feature 132249..132839
/locus_tag="A1C_00735"
/note="Permease; Region: Permease; pfam02405"
/db_xref="CDD:145511"
gene 133135..133890
/locus_tag="A1C_00740"
/db_xref="GeneID:5644893"
CDS 133135..133890
/locus_tag="A1C_00740"
/note="COG1127 ABC-type transport system involved in
resistance to organic solvents, ATPase component"
/codon_start=1
/transl_table=11
/product="ribonucleotide ABC transporter ATP-binding
protein"
/protein_id="YP_001492989.1"
/db_xref="GI:157825269"
/db_xref="GeneID:5644893"
/translation="MSVEEFKIKIRSLYKSFANHKVLDGIDLDVKKGSSLVILGGSGS
GKSVLIKNIVGLIKPDKGKIFIDNVEIQDISSKQKFEIMDGIGFLFQGGALFDSLNIR
DNVTFETKKLSKKEKNDLAGAKLNAVGLSPRILDLYPSELSGGMQKRVALARAICSTP
SILFLDEPTTGLDPIMANVINELIIKIQEELGATTITITHDMISAEKIAKEVAMIYQG
KIQWYGSKDEMRNSDNPYLKQFINGLTTGPIEV"
misc_feature 133135..133887
/locus_tag="A1C_00740"
/note="ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: Ttg2A;
COG1127"
/db_xref="CDD:31324"
misc_feature 133156..133854
/locus_tag="A1C_00740"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 133252..133275
/locus_tag="A1C_00740"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(133261..133266,133270..133278,133405..133407,
133630..133635,133732..133734)
/locus_tag="A1C_00740"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 133396..133407
/locus_tag="A1C_00740"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 133558..133587
/locus_tag="A1C_00740"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 133618..133635
/locus_tag="A1C_00740"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 133642..133653
/locus_tag="A1C_00740"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 133720..133740
/locus_tag="A1C_00740"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 133892..134140
/locus_tag="A1C_00745"
/db_xref="GeneID:5644894"
CDS 133892..134140
/locus_tag="A1C_00745"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492990.1"
/db_xref="GI:157825270"
/db_xref="GeneID:5644894"
/translation="MFKHLLCIIIFLGINLNVYAINSSSYRTDDIIKIVIILGIVIVI
FSPVKFRIILIGTMLGLACACFTYKYIVPIFISSLNGT"
gene 134219..134512
/gene="rpmB"
/locus_tag="A1C_00750"
/db_xref="GeneID:5644895"
CDS 134219..134512
/gene="rpmB"
/locus_tag="A1C_00750"
/note="required for 70S ribosome assembly"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_001492991.1"
/db_xref="GI:157825271"
/db_xref="GeneID:5644895"
/translation="MSRKCELTGVGVLYGNNVSHSQRKTRRRFEPNLRSVKFTSDITA
GKYRLSVNARCISSVEKAGGFDAYILQADDNVLSSNARAIKKKIIQTKTAKSL"
misc_feature 134219..134449
/gene="rpmB"
/locus_tag="A1C_00750"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene 134509..134745
/locus_tag="A1C_00755"
/db_xref="GeneID:5644896"
CDS 134509..134745
/locus_tag="A1C_00755"
/note="RpmE; RpmE2; there appears to be two types of
ribosomal proteins L31 in bacterial genomes; some contain
a CxxC motif while others do not; Bacillus subtilis has
both types; RpmE is found in exponentially growing Bacilli
while YtiA was found after exponential growth; expression
of ytiA is controlled by a zinc-specific transcriptional
repressor; RpmE contains one zinc ion and a CxxC motif is
responsible for this binding; forms an RNP particle along
with proteins L5, L18, and L25 and 5S rRNA; found
crosslinked to L2 and L25 and EF-G; may be near the
peptidyltransferase site of the 50S ribosome"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_001492992.1"
/db_xref="GI:157825272"
/db_xref="GeneID:5644896"
/translation="MKSNIHPEYKKFLIKVGSDVFETMSAHPTGEILMDVDFRKHPAW
NKDSGNVVNQSNKSVSDFNKRFSGLSFGGKKEAS"
misc_feature 134509..134742
/locus_tag="A1C_00755"
/note="50S ribosomal protein L31; Provisional; Region:
PRK01397"
/db_xref="CDD:179294"
gene 134966..135042
/locus_tag="A1C_t06893"
/db_xref="GeneID:5645783"
tRNA 134966..135042
/locus_tag="A1C_t06893"
/product="tRNA-Met"
/db_xref="GeneID:5645783"
gene 135384..136022
/gene="engB"
/locus_tag="A1C_00760"
/db_xref="GeneID:5645784"
CDS 135384..136022
/gene="engB"
/locus_tag="A1C_00760"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_001492993.1"
/db_xref="GI:157825273"
/db_xref="GeneID:5645784"
/translation="MINNEKAVNNKRSTDGGKLFRSQVKFVAGAMNINQIPNFSLPEI
AFVGKSNVGKSSLINTICNNKNLAKVSNTPGRTRQINFFNLADKLIIVDLPGYGFAHV
PISVKEQWEVLISYYLRNSHNLRLVNLLIDSRRGIKENDQKVAELLLANKREFQIIFT
KSDKVIDCKNLNNEVQNFLATLNYSCNVMYVSSRSKEGARALKASLAKCIKA"
misc_feature 135435..136019
/gene="engB"
/locus_tag="A1C_00760"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature 135510..136013
/gene="engB"
/locus_tag="A1C_00760"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature 135525..135548
/gene="engB"
/locus_tag="A1C_00760"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature order(135531..135551,135591..135599,135606..135614,
135660..135662,135864..135866,135870..135872,
135957..135962)
/gene="engB"
/locus_tag="A1C_00760"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature 135603..135623
/gene="engB"
/locus_tag="A1C_00760"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature 135612..135614
/gene="engB"
/locus_tag="A1C_00760"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature 135660..135671
/gene="engB"
/locus_tag="A1C_00760"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature order(135669..135680,135699..135743,135750..135755)
/gene="engB"
/locus_tag="A1C_00760"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature 135861..135872
/gene="engB"
/locus_tag="A1C_00760"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature 135957..135965
/gene="engB"
/locus_tag="A1C_00760"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 136910..137197
/locus_tag="A1C_00780"
/db_xref="GeneID:5645785"
CDS 136910..137197
/locus_tag="A1C_00780"
/note="COG3702 Type IV secretory pathway, VirB3
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB3"
/protein_id="YP_001492994.1"
/db_xref="GI:157825274"
/db_xref="GeneID:5645785"
/translation="MSGALASDLLFVGLTRPPMIFGVSIKFAALNMIMTMIVFIWNNG
IMILFIAAALHLVAYIICFKEPRFIELYLNKMSRTSQCPNKFYYGANSYNI"
misc_feature 136910..137194
/locus_tag="A1C_00780"
/note="type IV secretion system protein VirB3;
Provisional; Region: PRK13899"
/db_xref="CDD:139959"
gene 137496..139913
/locus_tag="A1C_00785"
/db_xref="GeneID:5645786"
CDS 137496..139913
/locus_tag="A1C_00785"
/note="COG3451 Type IV secretory pathway, VirB4
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system ATPase VirB4"
/protein_id="YP_001492995.1"
/db_xref="GI:157825275"
/db_xref="GeneID:5645786"
/translation="MKLFRTRAAKELRSKQERPTSHFIPYKCHWDSNTILTKDNSLLQ
VIKINGFSFETADDEDLDIKKNIRNALLKNMASGNIVMYFHTIRRRKAVIFDDTEFTY
DPTVKLPNDFITYLGVEWRKKHAGARSFFNELYVSILYKPDTGGAAIVEYFLKKLRQK
SNKTAWENDMKEMKENLQEMSTRVVNTFRSYGARLLGVRQTQSGNYCEILEFLSSLIN
CGDSPGPVALPRGTIDEYLPTHRLFFDSRTIEARSPLGKKYAGMISILEYGPNTSAGM
FDGFLQMPFEFVMTQSFVFANRSIAIGKMQLQQNRMIQSGDKATSQIAEINTALDMAT
SGDIGFGEHHLSLLCSAHNIKALEDILSMAAVELSNSGIQPVREKVNMEPSYWGQLPG
NMDYIVRKSTINTLNMASFASLHNYPLGKIRDNHWGEYVTVLDTTSGTPFYFNFHVRD
VGHTLIIGPTGAGKTVLMNFLCAEAQKFKPRMFFFDKDRGAEIFIRALNGVYTVIDPG
LKCNFNPLQLEDTSENRTFILEWLRVLVTSNGESLTAQDNKILSQAVSGNFRLEKQDR
RLSNVIAFLGIDTPNSLASRIAMWVGKGSHAKIFDNEVDDIDLQKARVFGFDMTELLK
DPVSLAPVLLYIFHRINISLDGQKTMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTF
VIFATQSVEDAAKSRISDTLIQQTATQIFLPNLKATDIYRSAFMLSQREYILIKTTDP
TTRYFLIKQGIDAVVAKVNLEGMNNIISVLSGRVETVLLLDQIREKYGNDPDKWLPIF
YEAVKTL"
misc_feature 137496..139910
/locus_tag="A1C_00785"
/note="type IV secretion system ATPase VirB4; Provisional;
Region: PRK13898"
/db_xref="CDD:172418"
misc_feature 138075..138692
/locus_tag="A1C_00785"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
misc_feature 138825..139553
/locus_tag="A1C_00785"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 138867..138890
/locus_tag="A1C_00785"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(138876..138881,138885..138893,139131..139133,
139455..139460)
/locus_tag="A1C_00785"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 139122..139133
/locus_tag="A1C_00785"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 139350..139379
/locus_tag="A1C_00785"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 139443..139460
/locus_tag="A1C_00785"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 139467..139478
/locus_tag="A1C_00785"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 139542..139553
/locus_tag="A1C_00785"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 140088..143114
/locus_tag="A1C_00790"
/db_xref="GeneID:5645787"
CDS 140088..143114
/locus_tag="A1C_00790"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001492996.1"
/db_xref="GI:157825276"
/db_xref="GeneID:5645787"
/translation="MKLFSRSILITLVLSFALNLGLVTKSHAEDTLDSIVDILSGLTC
ETQGVGDLLRTEFSHTCIVAPFFTFAVMNLVSPVSYMNTFLKLKINDGDLFNDSNFGN
FPGGQCTRENRIDPKNPELRFALCSNAKLIVSRAKSVTESALAIAKAVLTGSDPWDDI
KKAWENKKKEYHVPYSGKPGDDGFAFDVGFPVIYWKIIQDKDRICVSTKGFTGDVPVG
CKYMKEPFPKSMYNSFMDVADKDFIADPKETPTDPLALVSCSAAGGGCYQKAYNASKT
AVVMTSPLIECMRQMIARLLISKDVCSFDNVDQVVNLASRQDSALFQFQVGMYKIVTA
FLTLYVMFFGFKLLLAGEVPPKSDYINFILKMIFVTYFSIGINITPGNGSPYDRLDGM
IQWAFPFLLNGINGLASWVMNAAPSGLCKFNNLSYDGTVSYIALWDALDCRVAHYLGL
DILSTLLVENAYRSHDFLNFDFFSFSAPPYIYLLIPAIISGNMMLVSLALSYPLLVIS
VAAFMVNATIMCMISIVILGILAPLFVPMFLFTYTRNYFDNWVKLMISFLLQPMVVVT
FMITMFSVYDYGFYGKCQYKSKLIHNSIEDKIQGGIASNRDVLIFYINNDWDDTSQYP
DKDAVESCQNSLGYMLNNPITTAFNFTKDSISEIVNSKPGDTPTDKFLAKFQFLSGVV
LGPGMFFMSPKVLFEKIKNILLALVTACFTLYLMYNFSSQLAEFAADLTEGVALNNVA
IKPQAIFKVGMAALAAAGGATKGGDQIASRGGVGDLQAGQGGGVSDNIATSGGGMSND
NIAAIGGMSAPAVTTPTVSSSVATSSSNTVSSEAISDVVTTTAPPEAVSLPPASIRTS
ISTPAPQSNIDIESVGKIIRYNNHESKKEIDNTPPPKEIDNTPPRKKKVDNAAPQEKV
DSTSKGTGVIDYSFNLKEHGNPAGVKQIRENAEIRDKRVKVETAWNELVASGVGREQE
GGERSERRVNAEKVWDELVKSGVVTEKKDNSSNENS"
misc_feature 140937..142331
/locus_tag="A1C_00790"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 143101..145119
/locus_tag="A1C_00795"
/db_xref="GeneID:5645788"
CDS 143101..145119
/locus_tag="A1C_00795"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001492997.1"
/db_xref="GI:157825277"
/db_xref="GeneID:5645788"
/translation="MKTLKTLKIFIIVYIVSVNLTSFAGFGESCSSLPTTSDGYLETD
TAYGYIIRSIDMKDPRGNCNSVASSITFCFKNVEGSSSPCTIYNLNEGDSKKISELST
DNNPDLGANPILKNIVLTVKKWDNDLCLVMPTSRGPRPVACKSLSATPQPAPHNDENC
NIGKSCYTGANYSQSLINFSGLAVQCVSETLNKIFFAGNGCSSQDHNSRITHLAAFST
FQGYLKRIIGAALILYTMFFAFNMVLNKAYASTEKITLFVIKFLFVTYFSVGLGPLDF
SGGQPTKENGMLKYGLPLLTGAAPDFAQMIFNAVGSRGLCQFDHSKYKDGYKFYGLWD
AIDCRIGYYLGLDLLYNIDKNGVLGNSVGNGPGGNNTPIPNFDTDGKKDRPKDLSKAG
ALRFFTVMFGFLMAGNVIILAAGLVFSVIFLSILLYFITHYLVCMITIYVMTYISPVF
IAMALFTRTKSYFDGWFKVCISCALQPAVVAGFIALLITMYDSAIFKNCEFLRYDYEK
GDIRFSTFELRLPNSEADKCQESFGYKMLQYYAGEGWEEHLLILFPIKSIVRDVVSIL
AELLCVLVFSVIFYYFSKSIGRFAADLTNGPNMDAVTASPTKIVDLVKKGAAFLKDAD
IASQGKPSVGDKPDVGGKRKDGKQQGWDSESGAGGGLADLASGAGGGK"
misc_feature 143647..145047
/locus_tag="A1C_00795"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 145126..148056
/locus_tag="A1C_00800"
/db_xref="GeneID:5645497"
CDS 145126..148056
/locus_tag="A1C_00800"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001492998.1"
/db_xref="GI:157825278"
/db_xref="GeneID:5645497"
/translation="MQSNLLKVFGVLAIVATLVCFIFAVLGMIGAVKVGDGCYMRYAP
DGKGGSDSITGTITLNANANYVNTSKILPDGTTQLIPDPNHYGEWLNTQVLVEKSQPV
NLQVVGQVSLCLAYVPKDNLQFTESTRPGKSNLDDKGNMIPIPRITDANNPPLSLIMD
AKNNEWRNIAELYANDRVLVSVSPNFANTDATVEDAFKDDKVTKDCSQGKTAYESICG
KYSIYSGKYVNACELKQNYWQGNKHRETCYCFLGCIYPENVPPLVCEAANVSFHCCIG
FTCDSLPAWINHEGDMPEAYKDDGSFTFSWSNNSSNLFIDYAGLQCSNNANIPPNGKC
PDIVENRSPKDKDYIGGVNCTSGICQDGDFQKNRRFWYTADGKGGKGPTGLIYQMNDS
GSVSQALPSKLEFAEFVAETEQPHDYKDKDGKYLYKVIYNRPFNSNIEKSYLQYRLWS
PASQDASKNTGGYVLNIKQTKCYRENGNSFNDTFDDRGRVQYIIVKPSENPNTSGKTY
SPQGISVDSDGKYNFNANEAGYIWMKILNDPSNNLRDYKDSEGSYKVHFSTSLKVGSF
TIKVMNPLLQLFKTKVQGAATSIFKNMVCYKATDNASCTNFFTYIKAILILYVMTYGA
MFLLGFAKINQKELVIRIAKIGVVSGLMNGNTFEFFNNYLFDAITNFSDAIIANMSGY
SLFTSTNTISNPFMFLDAVMSKVFFSQTFIAQLLSLLSLGLSGIIYFIITFIAVGIVI
ITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMIEPVVMM
AGIIVLTQLFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWG
MDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRMVAKLTSAAGPSATDIGGRMSHDA
GQKALSPIGMDDKTRQGITSRAAARLKQRNKTLDQAEKNRKNTPKEGGEKTNEEPPKP
ETLK"
misc_feature 146509..147972
/locus_tag="A1C_00800"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 148265..150895
/locus_tag="A1C_00805"
/db_xref="GeneID:5645498"
CDS 148265..150895
/locus_tag="A1C_00805"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001492999.1"
/db_xref="GI:157825279"
/db_xref="GeneID:5645498"
/translation="MAIPAKADDAFSWMSTSFGGLKSLFGCLEVPKFTSFKDGNIGIS
LSTAGTWQSTGNTVEKGKLLKINWSTSGLTPEPRKYLVLYRIDPRFSTPQVFIKTYNY
SKLQFEALRFPRFVMDNNSATPGAIPPDKDLDALSFTKMSDSVKYFDYSDSNSRIKVK
AGDVVNISLVGKDNFFSPNTLDNILTQELDSSIFAASALYTQSNLGNFDNRIIYSSAK
EVCDLIDASRNPDKPSGCSGTGSATKYKSINSNEALVGKPMITGAVQNLMGLINSCPA
NAGINTSPACYYDQGRGMIIKVGGQVIKERDQSFVNSGSTQSSFIYYQATSGGTMDFT
SDWQVNNMFSNSVLMRDWSQNFSNYANFVDYINKNDWSANFLYFGRYSMIVEIGNGTN
SISPGDQQNISLEYFITSDGTLPDPSVRGTPVDYNFAADAPQDGYLWLRVVNPNSNIH
GVVSVNYANYTGTTWFSDIIYNGAIKPITDQFRTFSQHFYIKLINNSAVQNIAKAALT
LYVTIFGLMFVAGALKLTAIEVITRICKIAIVAFLIREESWRFFNTYFFSAFTNGIDF
FVTNVVGATSSRSNIFGFIDPIFDKYTNGRIWGLLFIELLQIHNGLAFIAIITIYSLI
TYFRAILEVIIGYVMAFIGLTVMISLAPFFIILMLFEKTKSLFDNWISTLLSYVVQPT
ILLIFFLLIDQVLSEQLLKVVVRACWDTLIPIKIGLDLTHLGIPINFSFTLPFLPGIP
FYVPDVPEISRSNLLTNNANTFLVLFTTALLFYSYCLMSYGLVSFVNIVVGMLTNVTP
ARISGNYQERSDPVGAVMKDIGSVTKPIKRVAMAPGRIFKDKIIDQNYKARKPEGGGE
FTHKFLAERNDVSKKEAERK"
misc_feature 149381..150814
/locus_tag="A1C_00805"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 151083..154547
/locus_tag="A1C_00810"
/db_xref="GeneID:5645499"
CDS 151083..154547
/locus_tag="A1C_00810"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_001493000.1"
/db_xref="GI:157825280"
/db_xref="GeneID:5645499"
/translation="MNKNIFITLLVSLLLLSGCTGDTCIDPDDFGFIKFNVSSRYNPE
EITSRDEGDQVVPWRDSAYKVNGYPLTVMVRPWSYILGDKNTSGQLSAWCPWYGQKNN
TTTLAAFCVKLQPCTFWDNARLDMCTPNPANQSDAMISNPPCIMTDGVGLYFLIAAKN
TDPNISPDSQRKPQGITQHLGELTSSVGYEFYSVSSTGQFLKAGGINYQYKGQEKSKY
AQSPLYFKIIDKFYNDNSGQYRLVIKSGVTDTRPDPLQFLTDLIKRVLFGKDGIIKKT
YQQIIDTPGYRMSVSAILTLYIMFTGFSFLIGNINLTHVELIVRILKVSIVSILLSTD
KAWTFFHDYLFVFFIDGVQQILQIINEAAATGPGSQSLLGLLIAPQTLSKLFSLLFVD
WLGFIYIILYLIALYFLFFLIFKATIIYLTALITIGMIIIMGPIFICFMLFNITRSLF
ENWLRQLISYALQPIILFAGIAFISMIIRTEIYSTLGFGVCKHDFPNLGPINEIFGSF
LEDIDPSLGNSIFYWWFPVPMKGGINNFHKAKILVPGDHIIVDDTCKNDHDKCKHCAA
YECIDERYIELPFLDLVKDAKRISNFINGKFVQLDGILLIFVSIYLLSKFNDTAISTA
QFISGTSGNLTDIQKVNQQSYEYAAKQMNRPLSYVAKMVGAPVTSRVNAMQEQASMFF
AEKFENMMMGRLEKQALGSSANKAVQNEVKRKYGIDFKDVKMNAITDYENGISGLLKN
LPKGNELKAKELSKMKFTQLRDKIAANKYGVKDYTALSKEQKTELDKSLKDANLRELA
SDANFTKDYQDAYKYAHQEMSGRGVGLFGKNIGVLRIWQEMEHRVDTKRKLKEEKRVG
IGEKIYAGYTGIKRGALTAIVGKDLRDAYEGNLTSAEWHDFEYNDPRLRTYSEKLKDN
DKAREREELKMHINKETLAAQADILSPEYLARLEKAGRQSDVEYYQELAYRKLMHDVH
GMLFEEGKPVMMGDRFMREKATDSQMRDMIDNAHRKHAEFIEGDRYIRRQEHYDIMHE
KAEGNLEQTYKELKDHFKRDQINIEEIPELIAQKIKDTEQGPEVDAKITEELNNFNAD
VKNYEYSTEVLNKIEDRKQAITDEVNAQIDQINKYRENAKMEKYVRPIVNEGRKLRKL
EDHLRNMN"
misc_feature 151533..152807
/locus_tag="A1C_00810"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 154665..154781
/locus_tag="A1C_00815"
/db_xref="GeneID:5645500"
CDS 154665..154781
/locus_tag="A1C_00815"
/codon_start=1
/transl_table=11
/product="antitoxin of toxin-antitoxin system VapB"
/protein_id="YP_001493001.1"
/db_xref="GI:157825281"
/db_xref="GeneID:5645500"
/translation="MTQEFRFSVKEVSVIPLGKGIVLQPLPNSWKDVFQEMA"
misc_feature <154674..>154766
/locus_tag="A1C_00815"
/note="Antidote-toxin recognition MazE; Region:
Antitoxin-MazE; cl00877"
/db_xref="CDD:212245"
gene 154859..155110
/locus_tag="A1C_00820"
/db_xref="GeneID:5645501"
CDS 154859..155110
/locus_tag="A1C_00820"
/note="COG1487 Predicted nucleic acid-binding protein,
contains PIN domain"
/codon_start=1
/transl_table=11
/product="toxin of toxin-antitoxin system"
/protein_id="YP_001493002.1"
/db_xref="GI:157825282"
/db_xref="GeneID:5645501"
/translation="MLDTNICVYAINKQPDSYHNNLALLAKNNTIAILSIVLAKFQYG
VSKSKKKEQNQNKFDVFLSRLEIIDFSMYFLLWRITYGT"
misc_feature 154859..>155068
/locus_tag="A1C_00820"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
gene 155369..156418
/locus_tag="A1C_00825"
/db_xref="GeneID:5645502"
CDS 155369..156418
/locus_tag="A1C_00825"
/EC_number="2.3.1.8"
/note="catalyzes the formation of acetyl phosphate from
acetyl-CoA and phosphate; can also act with other
short-chain acyl-CoAs"
/codon_start=1
/transl_table=11
/product="phosphate acetyltransferase"
/protein_id="YP_001493003.1"
/db_xref="GI:157825283"
/db_xref="GeneID:5645502"
/translation="MKKQHIINETFLDAILAEKLGTTYTHPREINDPDFDEAAQHFID
LLLRANGFKPVKTAVVHPIDKESLLGAVRAAQFNVIKPVLIGPQHKIESVAKVNNVDL
EDYQVINVKHSHEAAKKAVELAKKREVAAIMKGSLHTDELMSEVVHKENGLRTERRIS
HAFLMAVATFPKPFIITDAAINIRPTLEDKRDIVQNAIDLMHMIKKDKQVRVAVLSAV
ETVTSAIPTTLDAAALSKMADRGQITNAIVDGPLAFDNAISLFAAEAKGISSSVSGNA
DILVVPDLESGNMLAKQLKYLGHAVMAGIVLGARVPIILTSRADPMDMRVIACVLASF
IYNHTKAKLHSQSGR"
misc_feature 155465..156400
/locus_tag="A1C_00825"
/note="phosphate acetyltransferase; Provisional; Region:
PRK11890"
/db_xref="CDD:183361"
misc_feature 155477..156388
/locus_tag="A1C_00825"
/note="Phosphotransacetylase [Energy production and
conversion]; Region: Pta; COG0280"
/db_xref="CDD:30628"
gene 156420..157577
/locus_tag="A1C_00830"
/db_xref="GeneID:5645503"
CDS 156420..157577
/locus_tag="A1C_00830"
/note="COG0282 Acetate kinase"
/codon_start=1
/transl_table=11
/product="acetate kinase"
/protein_id="YP_001493004.1"
/db_xref="GI:157825284"
/db_xref="GeneID:5645503"
/translation="MKDVILIANAGSSSLKISIFEIQNKQVKDKIYNIFLEKNDNKIL
CYINKKQESATDIKDDAIEMMIDLFEDWWKKQENLNLIATGHRIVHGGKNFNKPVIVN
EKVSEDLRVLIPLNPLHQPYNLQVLDLFLQKYKEIVHIACFDTSFHFTNPPITKAFGL
PKKYYAKGIIRYGFHGLSYKYVSSHFKEMTKEDLPIKTIIAHLGSGSSLCAIKNGLSL
TSSMGFSVLDGVMMGTRTGNIDPGIVLYLIDHEKMTTKEITELLYKKSGLLGISGESS
DIRTLLASNSPDAKFAIDLFVYRIVLEIGKLTAALEGIDGLIFTAGVGQNSAVIREMI
SAKLSWLGIKIDDTKNQKNEHLISTESSKVKVFAVPTNEELIIAEEVIKFL"
misc_feature 156420..157568
/locus_tag="A1C_00830"
/note="acetate kinase; Region: ackA; TIGR00016"
/db_xref="CDD:161665"
misc_feature 156426..157574
/locus_tag="A1C_00830"
/note="Acetate kinase [Energy production and conversion];
Region: ackA; COG0282"
/db_xref="CDD:30630"
gene 157903..158067
/gene="trmD"
/locus_tag="A1C_00835"
/db_xref="GeneID:5645089"
CDS 157903..158067
/gene="trmD"
/locus_tag="A1C_00835"
/EC_number="2.1.1.31"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(1)-)-methyltransferase"
/protein_id="YP_001493005.1"
/db_xref="GI:157825285"
/db_xref="GeneID:5645089"
/translation="MRLLEKIKSHYIEAAQKAEFQKFQSDQAHKTNQQKAEAFRSGAT
AAAKKTKKRK"
gene 158144..158848
/gene="trmD"
/locus_tag="A1C_00840"
/db_xref="GeneID:5645090"
CDS 158144..158848
/gene="trmD"
/locus_tag="A1C_00840"
/note="methylates guanosine-37 in various tRNAs; uses
S-adenosyl-L-methionine to transfer methyl group to tRNA"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(1)-)-methyltransferase"
/protein_id="YP_001493006.1"
/db_xref="GI:157825286"
/db_xref="GeneID:5645090"
/translation="MSILHATILTVFPEMFPGTLGDSLAGQALKKNIWSYDVINIRDF
GLTKHKNVDDEAYGGGDGLIMRPDVLGNAIEHALSLNPNASIYYPSPRGRVFTQSFTK
EMLKNKNLIFLCGRYEGIDERVIEEYNVEEISVGDYILSGGEIPTLAILDCLIRLLPG
VLMNQNTLSSESFEEDGEFKGGLECSLYTRPKIWRGRAVPSVLLSGNHKLINEWKKEQ
SRMITKLRRPELLKDL"
misc_feature 158153..158845
/gene="trmD"
/locus_tag="A1C_00840"
/note="tRNA (guanine-N(1)-)-methyltransferase; Reviewed;
Region: trmD; PRK00026"
/db_xref="CDD:178803"
gene 158864..159280
/gene="rplS"
/locus_tag="A1C_00845"
/db_xref="GeneID:5645091"
CDS 158864..159280
/gene="rplS"
/locus_tag="A1C_00845"
/note="this protein is located at the 30S-50S ribosomal
subunit interface and may play a role in the structure and
function of the aminoacyl-tRNA binding site"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L19"
/protein_id="YP_001493007.1"
/db_xref="GI:157825287"
/db_xref="GeneID:5645091"
/translation="MNIIDHFEQENIAKLTANKQIPDFKAGDTVKVTVKVLDRSIEKD
GKEKLTERFQAYEGLVIAKRNRGITSSFLVRKISHGEGVERRFMTYSPIVHSINVVKY
GVVRRAKLYYLRNRSGKSARIKERHIHIAKTKTVKA"
misc_feature 158864..159241
/gene="rplS"
/locus_tag="A1C_00845"
/note="50S ribosomal protein L19; Provisional; Region:
rplS; PRK05338"
/db_xref="CDD:180025"
gene complement(159658..159894)
/locus_tag="A1C_00850"
/db_xref="GeneID:5645092"
CDS complement(159658..159894)
/locus_tag="A1C_00850"
/note="COG3750 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493008.1"
/db_xref="GI:157825288"
/db_xref="GeneID:5645092"
/translation="MSEVVVKEQLEQYISKIERLEQEKADLSQEVKDIFQDASAHGFD
VKAMKSILKLKKLDKDKLAEQDAMLELYRDTLGI"
misc_feature complement(159661..159894)
/locus_tag="A1C_00850"
/note="hypothetical protein; Provisional; Region:
PRK13694"
/db_xref="CDD:184250"
gene 160092..161018
/gene="secF"
/locus_tag="A1C_00855"
/db_xref="GeneID:5645093"
CDS 160092..161018
/gene="secF"
/locus_tag="A1C_00855"
/note="forms a complex with SecD and YajC; SecDFyajC
stimulates the proton motive force-driven protein
translocation; seems to modulate the cycling of SecA by
stabilizing its membrane-inserted state and appears to be
required for the release of mature proteins from the
extracytoplasmic side of the membrane; in some organisms,
such as Bacillus subtilis, SecD is fused to SecF"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_001493009.1"
/db_xref="GI:157825289"
/db_xref="GeneID:5645093"
/translation="MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKF
NFGIDFAGGIVIEVRLDQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRFGISSEE
NLMKNIELIKASLQSSFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRI
RENLRKYHKKNITEIINLSINETLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFF
GIIAGTYSSIFISAPILTMFANRKFNNKVIER"
misc_feature 160125..160991
/gene="secF"
/locus_tag="A1C_00855"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:183847"
misc_feature 160203..160289
/gene="secF"
/locus_tag="A1C_00855"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 160422..160988
/gene="secF"
/locus_tag="A1C_00855"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:111266"
gene 161250..162521
/locus_tag="A1C_00860"
/db_xref="GeneID:5645094"
CDS 161250..162521
/locus_tag="A1C_00860"
/note="part of NADH-ubiquinone oxidoreductase complex I;
shuttles electrons from NADH, via FMN and iron-sulfur
(Fe-S) centers, to quinones in the respiratory chain; NuoF
is part of the soluble NADH dehydrogenase fragment, which
represents the electron input part of NADH dehydrogenase"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit F"
/protein_id="YP_001493010.1"
/db_xref="GI:157825290"
/db_xref="GeneID:5645094"
/translation="MLKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFII
EEIKKSGLRGRGGAGFSTGMKWSFMPKNSEKPCYLVVNADESEPGTCKDRDILRFEPH
KLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCN
IYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVP
TILRRRASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGG
WDNLKAIIPGGSSVPLLPKSLCEVDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIAR
LSKFYMHESCGQCTPCREGTGWMWRVMIRLVKGNAKKSEIDELLNVTKEIEGHTICAL
GDAAAWPIQGLIRHFRSEIEDRIKSYSVAIS"
misc_feature 161250..162506
/locus_tag="A1C_00860"
/note="NADH dehydrogenase I subunit F; Provisional;
Region: PRK13596"
/db_xref="CDD:184170"
misc_feature 161970..162128
/locus_tag="A1C_00860"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature 162240..162371
/locus_tag="A1C_00860"
/note="NADH-ubiquinone oxidoreductase-F iron-sulfur
binding region; Region: NADH_4Fe-4S; smart00928"
/db_xref="CDD:197996"
gene 162646..163446
/locus_tag="A1C_00865"
/db_xref="GeneID:5645095"
CDS 162646..163446
/locus_tag="A1C_00865"
/note="COG0681 Signal peptidase I"
/codon_start=1
/transl_table=11
/product="Signal peptidase I"
/protein_id="YP_001493011.1"
/db_xref="GI:157825291"
/db_xref="GeneID:5645095"
/translation="MQTDNTKSNTNKTAKQEWWSCAFVICIALLIRILIMEPFTVPTG
SMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRIFAREPERGDIVVFRPPNDM
NVRYIKRLIGLPGDKIQLIDDVIYINDKKIERTEVGTYTSEDGIKYLKFKETLPNGRT
YFSYKLAPIFSVIYNDRYGNTDVFYVPEGKYFFLGDNRDQSNDSRVNLGFVPFENFIA
KAQFIWFSTKINWWDNDIGVMNLVLRLKPWIESVRLNRIFRNLYNTDE"
misc_feature 162709..163323
/locus_tag="A1C_00865"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature 162754..>162984
/locus_tag="A1C_00865"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(162778..162780,162967..162969)
/locus_tag="A1C_00865"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature 163105..163305
/locus_tag="A1C_00865"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature 163213..163215
/locus_tag="A1C_00865"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
gene 163446..164129
/gene="rnc"
/locus_tag="A1C_00870"
/db_xref="GeneID:5645325"
CDS 163446..164129
/gene="rnc"
/locus_tag="A1C_00870"
/EC_number="3.1.26.3"
/note="cytoplasmic enzyme involved in processing rRNA and
some mRNAs; substrates typically have dsRNA regions; forms
a homodimer; have N-terminal nuclease and C-terminal
RNA-binding domains; requires magnesium as preferred ion
for activity"
/codon_start=1
/transl_table=11
/product="ribonuclease III"
/protein_id="YP_001493012.1"
/db_xref="GI:157825292"
/db_xref="GeneID:5645325"
/translation="MQSFETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYER
LEFLGDAVLNLVVTEILFRNFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMT
YGEEVAGGRDNPNNIENAMEALIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPK
TALQEWAQASSHHLPIYRLIKREGAAHSSTFTVLVKVKDYEQTGTGHSIKEAEKNAAR
DLLHRLQDV"
misc_feature 163446..164123
/gene="rnc"
/locus_tag="A1C_00870"
/note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
/db_xref="CDD:178863"
misc_feature 163500..163895
/gene="rnc"
/locus_tag="A1C_00870"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(163572..163577,163584..163589,163596..163598,
163605..163610,163617..163622,163626..163634,
163662..163664,163830..163832,163857..163859)
/gene="rnc"
/locus_tag="A1C_00870"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature order(163572..163574,163581..163583,163593..163595,
163800..163802,163809..163811)
/gene="rnc"
/locus_tag="A1C_00870"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(163581..163583,163800..163802,163809..163811)
/gene="rnc"
/locus_tag="A1C_00870"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature 163917..164117
/gene="rnc"
/locus_tag="A1C_00870"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:28930"
misc_feature order(163917..163919,163935..163940,164064..164075,
164082..164084)
/gene="rnc"
/locus_tag="A1C_00870"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:28930"
gene 164122..165003
/gene="era"
/locus_tag="A1C_00875"
/db_xref="GeneID:5645326"
CDS 164122..165003
/gene="era"
/locus_tag="A1C_00875"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_001493013.1"
/db_xref="GI:157825293"
/db_xref="GeneID:5645326"
/translation="MYNQRTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSI
ITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDV
THDILDKLRSLNIVPIFLLNKIDIESKYLDDIKAFLIGNHPDSLFFPISALSGKNING
LLEYITGKAQIAPWLYAEDDITDLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWE
DLKDKSVKINQVIIVSRASYKTIILGKNGSKIREIGSKSRMQMERFFGFPVHLFLFVK
VHELWENHPDFYQYMKI"
misc_feature 164131..164616
/gene="era"
/locus_tag="A1C_00875"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature 164146..164994
/gene="era"
/locus_tag="A1C_00875"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature 164158..164181
/gene="era"
/locus_tag="A1C_00875"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature order(164164..164184,164224..164226,164236..164244,
164308..164310,164485..164490,164494..164496,
164572..164577)
/gene="era"
/locus_tag="A1C_00875"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature order(164203..164205,164209..164253)
/gene="era"
/locus_tag="A1C_00875"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature 164242..164244
/gene="era"
/locus_tag="A1C_00875"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature order(164296..164313,164371..164376)
/gene="era"
/locus_tag="A1C_00875"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature 164299..164310
/gene="era"
/locus_tag="A1C_00875"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature 164485..164496
/gene="era"
/locus_tag="A1C_00875"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature 164572..164580
/gene="era"
/locus_tag="A1C_00875"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature 164734..164964
/gene="era"
/locus_tag="A1C_00875"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
gene 165101..165574
/gene="ruvC"
/locus_tag="A1C_00880"
/db_xref="GeneID:5645327"
CDS 165101..165574
/gene="ruvC"
/locus_tag="A1C_00880"
/EC_number="3.1.22.4"
/note="endonuclease; resolves Holliday structures; forms a
complex of RuvABC; the junction binding protein RuvA forms
a hexameric ring along with the RuvB helicase and
catalyzes branch migration; RuvC then interacts with RuvAB
to resolve the Holliday junction by nicking DNA strands of
like polarity"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_001493014.1"
/db_xref="GI:157825294"
/db_xref="GeneID:5645327"
/translation="MIVLGIDPALGSLGWAVVARQLTKLKYLASGIIKTNSKDEIHNR
LACINSTLEKVILEYQPNMAAIEETFVNTNSVTSLKLGYARGAIMSLCGRYNLDIREF
KPNTVKKTVTGYGHAEKDQILHMIKLLLPGTSLITNSDEADAIAIAYTCHVMRVK"
misc_feature 165104..165553
/gene="ruvC"
/locus_tag="A1C_00880"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cd00529"
/db_xref="CDD:29627"
misc_feature order(165119..165121,165299..165301,165518..165520,
165527..165529)
/gene="ruvC"
/locus_tag="A1C_00880"
/note="active site"
/db_xref="CDD:29627"
misc_feature order(165131..165133,165200..165202,165317..165319,
165338..165340,165413..165415,165422..165424,
165455..165457)
/gene="ruvC"
/locus_tag="A1C_00880"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature order(165236..165238,165245..165247,165308..165310,
165323..165325,165332..165337,165344..165349,
165353..165358,165365..165367,165377..165382)
/gene="ruvC"
/locus_tag="A1C_00880"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene 165571..166266
/locus_tag="A1C_00885"
/db_xref="GeneID:5645328"
CDS 165571..166266
/locus_tag="A1C_00885"
/note="COG0565 rRNA methylase"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_001493015.1"
/db_xref="GI:157825295"
/db_xref="GeneID:5645328"
/translation="MNPVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQ
ARSNAVGAVNIIDNAKIYDNLEESVQDLEYLYATTCIKRAMNKDYVFSQNLPLDYPNS
EKVGIMFGRENNGLSNKEVALANKIITINTTEFSSLNIAQAVIIICYELFRNFKPRED
IHNIQKLATKEEIEHFLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEV
QTLQGIIKSLYTR"
misc_feature 165571..166263
/locus_tag="A1C_00885"
/note="rRNA methylase [Translation, ribosomal structure
and biogenesis]; Region: LasT; COG0565"
/db_xref="CDD:30911"
misc_feature 165571..>166023
/locus_tag="A1C_00885"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
cl00362"
/db_xref="CDD:212202"
gene complement(166641..166775)
/locus_tag="A1C_00890"
/db_xref="GeneID:5645329"
CDS complement(166641..166775)
/locus_tag="A1C_00890"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase"
/protein_id="YP_001493016.1"
/db_xref="GI:157825296"
/db_xref="GeneID:5645329"
/translation="MDIIENADTLLKIDCVRFESTKISRELYENILKEKKIIYFKNKP
"
gene complement(166951..168132)
/locus_tag="A1C_00895"
/db_xref="GeneID:5645330"
CDS complement(166951..168132)
/locus_tag="A1C_00895"
/note="COG3660 Predicted nucleoside-diphosphate-sugar
epimerase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493017.1"
/db_xref="GI:157825297"
/db_xref="GeneID:5645330"
/translation="MKIWVIADDRTGNTNQAIALAEKLTEEYTTIRLEYNCLAKLPNF
LLKYYPIHIKSELLQDILAKSPPDIIIAAGRRTAVLAFYLKQKLDLLHNVANKEEFIR
YTERSTAAYTLVREDASTGSTHKLPLEASGARGLFKDIKLIQIMQPNLLYNTFDAVIL
PYHDSSNSKNVIPWLDNGIQKKIKEDWIPRSIRGITIPINGAINNVTKKCAAANLELQ
KHYPNLKQFIAVIIGGNNKNFNFNEDEANLFSSLLNKIYTNQQIPLFISFSRRTPQAV
KSIIKNNMPASAIIYDPNEEVGYNPYIAMLANAQYIISTADSISMCSEAASSGKPLYI
FCPQNFNSSKHKIFVKQLVEQKIARIFDESVISLEAYDYKPLNEAERVAEIIKSLIKS
W"
misc_feature complement(166954..168132)
/locus_tag="A1C_00895"
/note="Predicted nucleoside-diphosphate-sugar epimerase
[Cell envelope biogenesis, outer membrane]; Region:
COG3660"
/db_xref="CDD:33458"
misc_feature complement(166975..168099)
/locus_tag="A1C_00895"
/note="Mitochondrial fission ELM1; Region: Mito_fiss_Elm1;
pfam06258"
/db_xref="CDD:191482"
gene complement(168129..169091)
/locus_tag="A1C_00900"
/db_xref="GeneID:5645331"
CDS complement(168129..169091)
/locus_tag="A1C_00900"
/note="COG0489 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="Mrp protein"
/protein_id="YP_001493018.1"
/db_xref="GI:157825298"
/db_xref="GeneID:5645331"
/translation="MADLHQKQIIDKLQHITFKDGTFLNNFISDIIIKDNNIGFSIDI
SGKNKLEAEEIRLKAINKLSEISEVNKISIVFTASKPIEQKIQKPKHIVENVKKIILV
ASGKGGVGKSTISALIAQQLSLEKYRVGIVDADIYGPSIPHIVGINKVPKTTDGRIIP
ITVKSIQVVSIGFFVKDNSAIIWRGPMASKTINQLLSSVTKWDNLDYLIIDMPPGTGD
IHLSLLENYHLDGVIIVTTPQKISEIDVIRSIDLYQKLNLPILGIIENMSYMFENNSG
WHLSQKYNIPLIAQIPIMPQIADACDKSLPLTDLLTLPLKEYLL"
misc_feature complement(168189..168947)
/locus_tag="A1C_00900"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Mrp;
COG0489"
/db_xref="CDD:30835"
misc_feature complement(168207..168797)
/locus_tag="A1C_00900"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
misc_feature complement(168756..168779)
/locus_tag="A1C_00900"
/note="Walker A motif; other site"
/db_xref="CDD:73300"
gene 169191..170228
/locus_tag="A1C_00905"
/db_xref="GeneID:5645172"
CDS 169191..170228
/locus_tag="A1C_00905"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="protease activity modulator HflK"
/protein_id="YP_001493019.1"
/db_xref="GI:157825299"
/db_xref="GeneID:5645172"
/translation="MLSKKYSSILKKSPWKDCDSNQDDNIFTRPRKNQFNFDKFQFQF
NFNVKTIILAVVAVIALWLASGIYEIKEGDEAAVIRFGRFVRKGYPGLNYHLPVPFEK
IIVEKVKQSRRIEIGYRTNNSVRSGGDNTKNIAGESIMLTGDENIVALNCDVMWHINN
LEDFIFNVQRPAETVKATVESAVREVIGNTPISCVLSDQKQEITYKIEKLAQKILDSY
NAGVMIEKVQLLKAEPPAEVIDSYRDVQTSKADKEKEINQAQAYNNKILPEARGAAAK
IIQEAEGYREEVISKAEGDSQRFNAIYKQYTVGRQVTRDRLYLEVVEEILGGSNKTII
NNALLPHMVIK"
misc_feature 169383..170168
/locus_tag="A1C_00905"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:48216"
misc_feature 169389..170195
/locus_tag="A1C_00905"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 170246..170395
/locus_tag="A1C_00910"
/db_xref="GeneID:5645173"
CDS 170246..170395
/locus_tag="A1C_00910"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493020.1"
/db_xref="GI:157825300"
/db_xref="GeneID:5645173"
/translation="MRAAVGLRGQSHEIIKFLRLPRRGFTPPRGDGANKNTTRNIKCN
KRFII"
gene 170371..171231
/locus_tag="A1C_00915"
/db_xref="GeneID:5645174"
CDS 170371..171231
/locus_tag="A1C_00915"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="membrane protease subunit
stomatin/prohibitin-like protein"
/protein_id="YP_001493021.1"
/db_xref="GI:157825301"
/db_xref="GeneID:5645174"
/translation="MQQKIYYIIFTIVFGMILIFSSLFSVDQRQSAVVFQFGEAVRTI
ENPGLNIKIPFIQNVEFFDKRLLDVEVEAKELTAADGKRVIVDAYAKFQINNPVMFYK
TVHDYQGVKIRLTRNLESSMRKVIGKISLSSLLSRERSNVMLNILNQVDGEAKSFGID
VVDVRILRADLPKENSAAIYRRMQTAREKEATQIRAEGQEESVRIRSKADKESKIILA
KAYRDAQIIKGDGDEKAAKIYNSAYSVDPEFYKFYRSLLVYKNSLKKEDTNFVISPDA
EVLKYLNLTK"
misc_feature 170392..171219
/locus_tag="A1C_00915"
/note="FtsH protease regulator HflC; Provisional; Region:
PRK11029"
/db_xref="CDD:182913"
misc_feature 170437..171159
/locus_tag="A1C_00915"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:48217"
gene 171236..172774
/locus_tag="A1C_00920"
/db_xref="GeneID:5645175"
CDS 171236..172774
/locus_tag="A1C_00920"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="serine protease"
/protein_id="YP_001493022.1"
/db_xref="GI:157825302"
/db_xref="GeneID:5645175"
/translation="MNLKIVLVIIILISSNVILAKENNKSLKLADQAENEFTAINSAP
LKVSEAARYSFADIVEPLIPAVVNISTIEYVNSKSENAEKDPLQETNPLDFINYFLEK
LNIPLNLEEIDQTPKIVPLGSGFIIEPNGLIVTNYHVIANVNKINIKLADNTELPAKL
IGSDTKTDLALLKIDSDEPLPFVEFGDSNDARVGDWVIAIGNPFGNLGGTVTSGIISS
KGRDIDIDTDNIVDNFIQTDAAINNGNSGGPMFNLDQKVIGVNTAIFSPLGTNIGIGF
AIPSNTAKPIIERLKKDGKVSRGRLGVTIQDLTEEISEGLGLKDTNGVLVAKVQEDGP
GDQAGIKTGDIIIEFGDIPVKNTKKLRVIIADTPINQEVKLKILRDKKVLELPIKITS
DNEEVTNDSTEETNKEEITNKEENSLSITKNNITFSNITEALRKKYTIPQDKTGIVIT
NIDAEESSFKIGDLITNINQESVDDISKLEELYENAKKSNKQNILLLIERCDTSVFMP
LSVV"
misc_feature 171395..172762
/locus_tag="A1C_00920"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature 171599..172015
/locus_tag="A1C_00920"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 172130..172399
/locus_tag="A1C_00920"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(172133..172144,172148..172150,172301..172306,
172313..172318)
/locus_tag="A1C_00920"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature 172508..172762
/locus_tag="A1C_00920"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(172508..172510,172514..172516,172658..172663,
172670..172675)
/locus_tag="A1C_00920"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene 172853..173596
/locus_tag="A1C_00925"
/db_xref="GeneID:5645176"
CDS 172853..173596
/locus_tag="A1C_00925"
/note="COG1054 Predicted sulfurtransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493023.1"
/db_xref="GI:157825303"
/db_xref="GeneID:5645176"
/translation="MSEKIAILSAYSFVNIEEPANLIPKLLLIGKRKYVRGTILLANE
GFNGSFSGSYENVNLVLEELIKLTGPKDVNVKINYSDVHPFQKLKVRLKKEIVAMNVE
GLNVDLFKGEYIEPKDWDEFITKQNVIVIDTRNDYEVEVGTFKSAISPNTKTFKQFPA
WVQKNQGLLKGKRIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDTQNKNN
LWQGACFVFDDRRAVADDLSPVAGHWLQR"
misc_feature 172853..173593
/locus_tag="A1C_00925"
/note="hypothetical protein; Validated; Region: PRK01415"
/db_xref="CDD:167229"
misc_feature 173183..173485
/locus_tag="A1C_00925"
/note="Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins; Region: RHOD_YceA; cd01518"
/db_xref="CDD:29081"
misc_feature 173384..173386
/locus_tag="A1C_00925"
/note="active site residue [active]"
/db_xref="CDD:29081"
gene 173782..174156
/locus_tag="A1C_00930"
/db_xref="GeneID:5645177"
CDS 173782..174156
/locus_tag="A1C_00930"
/note="COG2009 Succinate dehydrogenase/fumarate reductase,
cytochrome b subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase cytochrome b-556
subunit"
/protein_id="YP_001493024.1"
/db_xref="GI:157825304"
/db_xref="GeneID:5645177"
/translation="MTKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAV
SILVWWLILSKYDNNYLQFAKCCIIKICLVAVSYSWFYHLCNGIRHLFWDIGYGFSIK
AVNITGWCVVVGSLLLTMLLWV"
misc_feature 173815..174153
/locus_tag="A1C_00930"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase C (SdhC) subunit;
composed of bacterial SdhC and eukaryotic large cytochrome
b binding (CybL) proteins. SQR catalyzes the oxidation of
succinate to fumarate coupled to the...; Region:
SQR_TypeC_SdhC; cd03499"
/db_xref="CDD:48060"
misc_feature order(173815..173826,173839..173847,173851..173853,
173860..173862,173881..173883,174049..174051,
174058..174060,174064..174066)
/locus_tag="A1C_00930"
/note="Iron-sulfur protein interface; other site"
/db_xref="CDD:48060"
misc_feature order(173848..173850,173869..173874,173881..173883)
/locus_tag="A1C_00930"
/note="proximal quinone binding site [chemical binding];
other site"
/db_xref="CDD:48060"
misc_feature order(173881..173883,173914..173916,173923..173925,
173932..173937,173962..173964,173998..174000,
174061..174063,174145..174147)
/locus_tag="A1C_00930"
/note="SdhD (CybS) interface [polypeptide binding]; other
site"
/db_xref="CDD:48060"
misc_feature order(173881..173883,173899..173904,174028..174033)
/locus_tag="A1C_00930"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:48060"
gene 174317..174409
/locus_tag="A1C_00935"
/db_xref="GeneID:5645178"
CDS 174317..174409
/locus_tag="A1C_00935"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493025.1"
/db_xref="GI:157825305"
/db_xref="GeneID:5645178"
/translation="MIVIVRFYKVFGVIPAKAGMTPIQNMFREN"
gene 174409..174786
/locus_tag="A1C_00940"
/db_xref="GeneID:5645760"
CDS 174409..174786
/locus_tag="A1C_00940"
/note="COG2142 Succinate dehydrogenase, hydrophobic anchor
subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase hydrophobic membrane
anchor protein"
/protein_id="YP_001493026.1"
/db_xref="GI:157825306"
/db_xref="GeneID:5645760"
/translation="MVYDFKVEIVKAKNSGSAKSGSHRWLSQRITGIILALCSIWLIY
FMLTNKNNDINIIMWELKKPFNVVALLITVAISLYHSMLGMRVVIEDYISCHKLHNIL
IIIVQLFCIVTITTFVVAMFYIG"
misc_feature 174475..174774
/locus_tag="A1C_00940"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase D (SdhD) subunit-like;
composed of predominantly uncharacterized bacterial
proteins with similarity to the E. coli SdhD subunit. One
characterized protein is the respiratory...; Region:
SQR_TypeC_SdhD_like; cd03495"
/db_xref="CDD:48056"
misc_feature order(174493..174495,174679..174684,174745..174747,
174754..174756)
/locus_tag="A1C_00940"
/note="putative SdhC subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(174502..174504,174646..174648,174658..174660)
/locus_tag="A1C_00940"
/note="putative proximal heme binding site [chemical
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(174667..174669,174676..174681,174688..174690)
/locus_tag="A1C_00940"
/note="putative Iron-sulfur protein interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature 174682..174684
/locus_tag="A1C_00940"
/note="putative proximal quinone binding site; other site"
/db_xref="CDD:48056"
gene 174783..174938
/locus_tag="A1C_00945"
/db_xref="GeneID:5645761"
CDS 174783..174938
/locus_tag="A1C_00945"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493027.1"
/db_xref="GI:157825307"
/db_xref="GeneID:5645761"
/translation="MNYKVIYYGYNSNRKKVNSGMYSNASAVVAEALGLIDKFEKAQS
IKCDLLC"
gene 175024..175290
/locus_tag="A1C_00950"
/db_xref="GeneID:5645762"
CDS 175024..175290
/locus_tag="A1C_00950"
/codon_start=1
/transl_table=11
/product="toxin of toxin-antitoxin (TA) system ParE"
/protein_id="YP_001493028.1"
/db_xref="GI:157825308"
/db_xref="GeneID:5645762"
/translation="MSYNLTKIAENDLLQIKYCSAEVFWQEIARKYLIQIHNRCIEIC
NFPNIGINRPEIFKNIKSIIFNSNIILYFVIENEISILRMCIKI"
misc_feature 175024..175272
/locus_tag="A1C_00950"
/note="Plasmid stabilization system protein [General
function prediction only]; Region: ParE; COG3668"
/db_xref="CDD:33466"
gene 175325..177115
/gene="sdhA"
/locus_tag="A1C_00955"
/db_xref="GeneID:5645763"
CDS 175325..177115
/gene="sdhA"
/locus_tag="A1C_00955"
/EC_number="1.3.5.1"
/note="part of four member succinate dehydrogenase enzyme
complex that forms a trimeric complex (trimer of
tetramers); SdhA/B are the catalytic subcomplex and can
exhibit succinate dehydrogenase activity in the absence of
SdhC/D which are the membrane components and form
cytochrome b556; SdhC binds ubiquinone; oxidizes succinate
to fumarate while reducing ubiquinone to ubiquinol"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_001493029.1"
/db_xref="GI:157825309"
/db_xref="GeneID:5645763"
/translation="MNKAYNIIHHKFDVVVVGAGGAGLRSAFGMAQEGLDTACITKLF
PTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILE
LEHYGVPFSRTKEGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLK
HKVQFFVEYFAIDLLMEDGECRGVVAWNLDDGRLHCFRAHNVVLATGGYGRAYFSATS
AHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGCLITEGARGEGGYLVNVNGERF
MERYAPAAKDLASRDVVSRAMTIEIREGRGVGEHKDHVFLHLNHLSPEILHSRLPGIV
ETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGQVIIKDGKNHNSVVKGLMAIGEA
ACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASPHKPLKEESLEKIINRFDKI
RYNNGNILTADLRLKMQRTMQSHASVFRTQEVLDEGAGMISEIRSGYKDIKINDKSLI
WNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPGRNDEDWMKHTLSSIDA
AGKVVLDYKPVTLTTLTDEISTIPPAKRVY"
misc_feature 175325..177112
/gene="sdhA"
/locus_tag="A1C_00955"
/note="succinate dehydrogenase flavoprotein subunit;
Reviewed; Region: sdhA; PRK09078"
/db_xref="CDD:181641"
misc_feature 175442..176701
/gene="sdhA"
/locus_tag="A1C_00955"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 176711..177112
/gene="sdhA"
/locus_tag="A1C_00955"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene 177373..178029
/locus_tag="A1C_00960"
/db_xref="GeneID:5645764"
CDS 177373..178029
/locus_tag="A1C_00960"
/note="COG0765 ABC-type amino acid transport system,
permease component"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_001493030.1"
/db_xref="GI:157825310"
/db_xref="GeneID:5645764"
/translation="MFEYLIKFYPKILFIVEGTLVTLKYSIIAVILGLVIGMLLAICK
VNKNRALRLCANFYTSIFRGTPLLIQLTIIYFASPYIIGVKFSVFMAGAIAFSLNSGA
YVSEVIRAGINAVDKGQFEAAEALAIPKFLIMKDIILPQAVKNIFPSLVNELVNLIKE
SAIISMLGEMDLMRRAQIVSIETYNYFFPMSIAACCYYILVMLISFIAKIIEKKMIVN
"
misc_feature 177415..178014
/locus_tag="A1C_00960"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 177430..177990
/locus_tag="A1C_00960"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(177475..177480,177487..177492,177505..177507,
177535..177546,177550..177579,177586..177591,
177595..177597,177664..177669,177673..177675,
177679..177681,177688..177693,177697..177699,
177709..177714,177721..177723,177772..177774,
177814..177819,177826..177828,177847..177858,
177865..177870,177907..177912,177940..177945,
177952..177957,177961..177966,177973..177978,
177985..177990)
/locus_tag="A1C_00960"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(177553..177597,177847..177864)
/locus_tag="A1C_00960"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(177595..177597,177649..177651,177865..177867,
177901..177903,177910..177912,177940..177942)
/locus_tag="A1C_00960"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(177724..177762,177778..177783,177793..177795)
/locus_tag="A1C_00960"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 178187..178576
/gene="rpsL"
/locus_tag="A1C_00965"
/db_xref="GeneID:5645765"
CDS 178187..178576
/gene="rpsL"
/locus_tag="A1C_00965"
/note="interacts with and stabilizes bases of the 16S rRNA
that are involved in tRNA selection in the A site and with
the mRNA backbone; located at the interface of the 30S and
50S subunits, it traverses the body of the 30S subunit
contacting proteins on the other side; mutations in the
S12 gene confer streptomycin resistance"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_001493031.1"
/db_xref="GI:157825311"
/db_xref="GeneID:5645765"
/translation="MPTYNQLVRFGRKSKTRKSKSPALESNPFKSGVCLVVKTVTPKK
PNSALRKIATVRLSNKRTVNAYIPGEKHSVKEHDRVLVRGGQVPDLPGVKYHIVLGAY
DISGVKGRKQGRSRYGAPCKQIAVTKK"
misc_feature 178193..178516
/gene="rpsL"
/locus_tag="A1C_00965"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(178196..178201,178205..178210,178217..178222)
/gene="rpsL"
/locus_tag="A1C_00965"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 178196..178198
/gene="rpsL"
/locus_tag="A1C_00965"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(178220..178228,178262..178264,178268..178273,
178277..178279,178322..178327,178331..178339,
178358..178360,178382..178384,178391..178396,
178433..178438,178448..178453,178514..178516)
/gene="rpsL"
/locus_tag="A1C_00965"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(178313..178318,178448..178450)
/gene="rpsL"
/locus_tag="A1C_00965"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 178316..178321
/gene="rpsL"
/locus_tag="A1C_00965"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(178319..178336,178394..178420)
/gene="rpsL"
/locus_tag="A1C_00965"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 178603..179085
/locus_tag="A1C_00970"
/db_xref="GeneID:5645766"
CDS 178603..179085
/locus_tag="A1C_00970"
/note="binds directly to 16S rRNA where it nucleates
assembly of the head domain of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_001493032.1"
/db_xref="GI:157825312"
/db_xref="GeneID:5645766"
/translation="MSRRHAAEKRVILPDMKYNSILLSRFINNIMKKGKKALAEKIVY
SAFNKIEKKHRVDPYQTFNNAMHNVKPHLEVTSVRVGGANYQVPTHVDERRGYALASR
WIINAASKRSEKMMIDKLAEELFEASNNRGVAIKKKEDTHKMAEANKAFSHFSPKKMQ
"
misc_feature 178603..179064
/locus_tag="A1C_00970"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 179099..181198
/locus_tag="A1C_00975"
/db_xref="GeneID:5645702"
CDS 179099..181198
/locus_tag="A1C_00975"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_001493033.1"
/db_xref="GI:157825313"
/db_xref="GeneID:5645702"
/translation="MSKMNKLEHIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVH
DGGATMDWMEQEQERGITITSAATTCRWQDKIINIIDTPGHVDFTIEVERSLRVLDGA
VAVFDGVAGVEPQSETVWRQADKYNVPRMCFVNKMDRMGADFYRCVEMIKDRLGAKPL
VLQLPVGIEENFKGIIDLVKMKAVIWKDESLGAEYCEEDIPADMKDKAEEYRAKLLDM
VVELDDTIMEKYLSGEEVTEEEIKRLIRKGTISAAFYPVLCGSAFKNKGVQPLLDAVV
YFLPSPIDIGIVKGIEVSTGEEKDFPVSVIEPFAALAFKIMNDPFVGSLTFIRIYSGK
IASGITVINTVKNKKEKIGRMLLMHANNREDVKEASAGDIVALAGLKDTTTGDTLSDV
DKQVILERMEFPEPVIELAVEPKSTADQEKMGLALSRLAAEDPSFRVSMDHETGQTVI
KGMGELHLEIIIDRMRREFKVEANIGAPQVAYRETITKACEIDYTHKKQSGGAGQFAR
VKIIFEPLKEVKDLEDEDKNKTFVFASKIVGGAVPKEYIPGVEKGLNNIRETGVIAGY
PMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGDPKLLEPIMKVEVITPDEY
MGDIIGDLNSRRGQIQSMDPRGNAQVVTANVPLAEMFGYVNTLRSLSQGRAQFSMIFS
HYDQVPSQVADIIKAKK"
misc_feature 179099..181195
/locus_tag="A1C_00975"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 179132..179944
/locus_tag="A1C_00975"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 179147..179170
/locus_tag="A1C_00975"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(179150..179152,179156..179158,179168..179173,
179180..179182,179189..179194,179294..179299,
179351..179356,179423..179428,179534..179536,
179546..179548)
/locus_tag="A1C_00975"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(179156..179158,179162..179173,179501..179506,
179510..179512,179879..179887)
/locus_tag="A1C_00975"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 179237..179296
/locus_tag="A1C_00975"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 179282..179284
/locus_tag="A1C_00975"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 179339..179350
/locus_tag="A1C_00975"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 179345..179401
/locus_tag="A1C_00975"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 179501..179512
/locus_tag="A1C_00975"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 179879..179887
/locus_tag="A1C_00975"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 180023..180271
/locus_tag="A1C_00975"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 180542..180913
/locus_tag="A1C_00975"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 180929..181162
/locus_tag="A1C_00975"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 181307..181382
/locus_tag="A1C_t06895"
/db_xref="GeneID:5645703"
tRNA 181307..181382
/locus_tag="A1C_t06895"
/product="tRNA-Trp"
/db_xref="GeneID:5645703"
gene 181572..181778
/gene="secE"
/locus_tag="A1C_00980"
/db_xref="GeneID:5645704"
CDS 181572..181778
/gene="secE"
/locus_tag="A1C_00980"
/note="forms a complex with SecY and SecG; SecYEG forms a
putative protein-conducting channel to which secA binds
and translocates targeted polypeptides across the
cytoplasmic membrane, a process driven by ATP and a
proton-motive force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001493034.1"
/db_xref="GI:157825314"
/db_xref="GeneID:5645704"
/translation="MFKEYKIYKLCEQVKQEIYKVVWPTKKELVASTLVVVAAVFIFS
LICLVLDYSIHNIMQLLLNIGKLV"
misc_feature 181572..181754
/gene="secE"
/locus_tag="A1C_00980"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 181789..182367
/gene="nusG"
/locus_tag="A1C_00985"
/db_xref="GeneID:5645705"
CDS 181789..182367
/gene="nusG"
/locus_tag="A1C_00985"
/note="Modulates Rho-dependent transcription termination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="YP_001493035.1"
/db_xref="GI:157825315"
/db_xref="GeneID:5645705"
/translation="MTEQSIDNVLSSSERNVKQWYVVHTVSGAEKRIKEDLLRKIAKQ
KMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNITDKSWHLVKNISGVTG
FLGSKTTPKALTDSEIQNIFNNLEAEAKEAKNSKVYEVGEIVIVTDGPFETFTGMVEE
IDQEKNRLKVSVSIFGKATPIELNFNQVKKNN"
misc_feature 181825..182364
/gene="nusG"
/locus_tag="A1C_00985"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 181843..182157
/gene="nusG"
/locus_tag="A1C_00985"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(181852..181854,181954..181956,182014..182016,
182023..182025,182029..182031,182125..182127,
182149..182151)
/gene="nusG"
/locus_tag="A1C_00985"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 182203..182280
/gene="nusG"
/locus_tag="A1C_00985"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 182582..183019
/gene="rplK"
/locus_tag="A1C_00990"
/db_xref="GeneID:5645706"
CDS 182582..183019
/gene="rplK"
/locus_tag="A1C_00990"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001493036.1"
/db_xref="GI:157825316"
/db_xref="GeneID:5645706"
/translation="MSQKAIKGYINLIIPAGGATPAPPIGPALGQRKVNIKTFCDEFN
NSTKDMDKGVPLPTLITVYEDSSFSFKIKTPPASYFLKKYAKITKGSSATKKEAVVGK
VTMDDCREIAKLKMPDLNTKDIEAATKIICGSAASMGLEVVGN"
misc_feature 182591..183013
/gene="rplK"
/locus_tag="A1C_00990"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 182666..183007
/gene="rplK"
/locus_tag="A1C_00990"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(182672..182674,182807..182815,182825..182827,
182846..182848,182924..182926,182939..182947,
182957..182959,182966..182971,182978..182983,
182987..182995)
/gene="rplK"
/locus_tag="A1C_00990"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature 182672..182674
/gene="rplK"
/locus_tag="A1C_00990"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(182756..182758,182762..182773,182783..182785,
182789..182794,182927..182932,182939..182944)
/gene="rplK"
/locus_tag="A1C_00990"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(182864..182866,182876..182878)
/gene="rplK"
/locus_tag="A1C_00990"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 183025..183744
/gene="rplA"
/locus_tag="A1C_00995"
/db_xref="GeneID:5645707"
CDS 183025..183744
/gene="rplA"
/locus_tag="A1C_00995"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001493037.1"
/db_xref="GI:157825317"
/db_xref="GeneID:5645707"
/translation="MSNKKDITVKMSGGKKIREAREKVKPDTLYNLTNAVEQLKSASY
VKFDPTLEIVMKLGIDPRHSDQMVRGVVNLPAGTGKIVRVAVICKEEREEEAKSAGAD
LVGSTNIIDEIKSGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKN
AIKNAKSGQVEYRAEKSGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPSGLKGSYL
KAMYLSSTMGASVQIDLTSIA"
misc_feature 183118..183723
/gene="rplA"
/locus_tag="A1C_00995"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(183157..183165,183172..183174,183178..183180,
183184..183186,183190..183192,183553..183555,
183559..183561,183565..183567,183703..183708,
183712..183714)
/gene="rplA"
/locus_tag="A1C_00995"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 183846..184355
/gene="rplJ"
/locus_tag="A1C_01000"
/db_xref="GeneID:5644713"
CDS 183846..184355
/gene="rplJ"
/locus_tag="A1C_01000"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001493038.1"
/db_xref="GI:157825318"
/db_xref="GeneID:5644713"
/translation="MLRSEKPVAVGDVVNIYKESPSIIITRYHGLTVSQVSSLRESLK
SREAGFKVVKNTLAKIAAKQTGLDSIANLFAGPTAIVYSKEPVEMAKLVVNFAKSNGN
LKIVGGIVDNRVLDEYSIKELSKLPSLNELRGKIVWLLQAPSTKVVGVLQAPSVSMAR
VLQAHASKN"
misc_feature 183849..184310
/gene="rplJ"
/locus_tag="A1C_01000"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(183861..183866,183873..183875,184005..184016,
184023..184025)
/gene="rplJ"
/locus_tag="A1C_01000"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(184104..184106,184173..184175,184182..184184,
184230..184232,184239..184244,184251..184256,
184260..184277,184281..184289,184296..184301,
184305..184310)
/gene="rplJ"
/locus_tag="A1C_01000"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 184545..184919
/gene="rplL"
/locus_tag="A1C_01005"
/db_xref="GeneID:5644714"
CDS 184545..184919
/gene="rplL"
/locus_tag="A1C_01005"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001493039.1"
/db_xref="GI:157825319"
/db_xref="GeneID:5644714"
/translation="MADLAKIEEQLSSLTLMQAAELVKMLEEKWCVSAAAPVAVAAAG
AAPAAEAVAEKTEFEIVLIAAGDKKVEVIKAVKDITGLGLIEAKKLVDEAPKLMKSNV
KKAEAEEIKGKLEAAGAKVELK"
misc_feature 184548..184913
/gene="rplL"
/locus_tag="A1C_01005"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(184548..184550,184587..184595,184602..184607,
184614..184616,184623..184625,184668..184670,
184677..184682,184686..184694,184710..184715,
184776..184778,184782..184787,184791..184793,
184797..184802,184842..184847,184851..184853,
184860..184862)
/gene="rplL"
/locus_tag="A1C_01005"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(184557..184559,184566..184568,184578..184580,
184617..184619,184632..184634)
/gene="rplL"
/locus_tag="A1C_01005"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(184599..184601,184608..184613,184623..184625,
184632..184634)
/gene="rplL"
/locus_tag="A1C_01005"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184749..184754,184761..184766,184773..184775,
184794..184799,184806..184808)
/gene="rplL"
/locus_tag="A1C_01005"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184752..184754,184764..184766,184773..184775,
184794..184799,184806..184808)
/gene="rplL"
/locus_tag="A1C_01005"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(184752..184754,184761..184766,184773..184775)
/gene="rplL"
/locus_tag="A1C_01005"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 185804..189925
/gene="rpoB"
/locus_tag="A1C_01010"
/db_xref="GeneID:5644715"
CDS 185804..189925
/gene="rpoB"
/locus_tag="A1C_01010"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001493040.1"
/db_xref="GI:157825320"
/db_xref="GeneID:5644715"
/translation="MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYE
KNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRS
LSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVV
VSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVLYFRIDRKRK
LYATTLLRAIGMSTEEIIKFYYNSVTYKLVKKKGWAVKFIPKHITAHRLTSDLVDADT
GNVLLKAGQKITPRLAQKYCAEGINNILVAHETLIGKYLSEDLRDPASDEVLAKIGEI
ITSDMLNVINDLKIKNVNVLVINPQSGPYIRNTLFADKNQDREAALCDIFRVLRPGEP
TNIEAAESLFYNLFFDSERYDLSEVGRIKMNSRLGLSISEEVTVLTIDDIKNIVRVLV
ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTVMPHD
LVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRD
VHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRKVKDGRVIDEVIYLS
AIEEGKYKIGQANSKVDRDGKLQGEFINCRVEGGNFVMVEPHEVDFIDVTPMQVVSVA
ASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDG
IVEQVDSNRIVIRTLEQKIDGSPSVYIYNLLKFQKSNHNTCINQKPLVQVGHYVKKND
IIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDIFTSIHIEEFEVI
ARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPITP
EEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQRAIAIEKQQIEK
LAKDRDDELEIIEHFVFSLLEKLLVGQVIINGLKQVKAGQTITTEMLKGLSKGQFWQL
TVEDANVMNEIEQIKIHYDEKKDALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKH
KLQPGDKMAGRHGNKGVVSRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETH
LGWASINLAQKISTLVKEYKNKNIGIEKIKKFLLELYGENINYILERSEEEIISFCNK
VGKGVYFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLL
KLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS"
misc_feature 185831..>188662
/gene="rpoB"
/locus_tag="A1C_01010"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:179007"
misc_feature 185906..>186511
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <186821..187216
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <187118..>187990
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature 188000..>188677
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:201307"
misc_feature <189005..189910
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(189056..189058,189062..189064,189137..189145,
189152..189154,189158..189163,189533..189556,
189560..189562)
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(189110..189112,189116..189118,189122..189124,
189188..189190,189194..189196,189203..189205,
189212..189214,189227..189229,189239..189241,
189449..189451,189530..189532,189554..189562,
189566..189568,189605..189607,189614..189622,
189626..189631,189692..189700,189710..189712,
189716..189721,189725..189727,189731..189748,
189752..189769,189779..189781,189848..189850,
189860..189862,189866..189868,189872..189877,
189881..189883,189887..189898,189902..189904,
189908..189910)
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(189134..189136,189536..189538)
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(189137..189139,189176..189178,189257..189262,
189425..189427,189518..189520,189569..189571)
/gene="rpoB"
/locus_tag="A1C_01010"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 190244..194362
/locus_tag="A1C_01015"
/db_xref="GeneID:5644716"
CDS 190244..194362
/locus_tag="A1C_01015"
/EC_number="2.7.7.6"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001493041.1"
/db_xref="GI:157825321"
/db_xref="GeneID:5644716"
/translation="MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETIN
YRTFKPEKDGLFCARIFGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMG
HIELAAPVAHIWFLKSLPSRISTLLDMTMRDVEKILYFENYVVIDPGLSILQKGELLT
EEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFAKLKHELYEELQTTSSEVKKKKIV
KRLKLVEDFLESENKPEWMIMDVLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRN
NRLKKLIESKAPDIIVRNEKRMLQEAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGK
QGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSKLELYGIAT
TIKAAKRMVEAEKPEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLH
PLVCAAFNADFDGDQMAVHIPLSIEAQLEARVFMMSTNNILSPANGRPIIVPDKDIVL
GLYYLTLAFDNEVGEGMMFSDLAEMEHALYNKFITIHTKIKYRRNQLNAEGKMVHVII
DTTYGRLMVGELLPSNPNIEFKFINKQLTKKDISLVIDLVYRHCGQKATVIFADQLMK
LGFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLITYGEKYNKVVD
AWSRCTDRVANDMMKEIATPRVSDEPNHQKINAIYMMAISGARGSFQQIKQLGGMRGL
MTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDTALKTASSGYLTRKLVDVA
QDCIITEKDCGTDKGIEVKSVIEGGEVIVPSSEKILGRTAAIDIFHPVTNALILNKGE
LINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATGTLVSEGEAIGVIAA
QSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYGAKVKIISRNVVINSEERKIVMSR
NCELLLLDNNGNEKARHKIPYGARLLVDDGDMVVKTQKLAEWDPYTIPIITEKSGKVL
FKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAEGAVITLSNGLE
ARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHA
VIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLID
GNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG
GTTLLAGEKIDRHEFEEINKKAIKNGLKPAAAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENI"
misc_feature 190289..191269
/locus_tag="A1C_01015"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 190298..192784
/locus_tag="A1C_01015"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 190946..191776
/locus_tag="A1C_01015"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 191708..192169
/locus_tag="A1C_01015"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 192254..192517
/locus_tag="A1C_01015"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 192947..>193051
/locus_tag="A1C_01015"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 192962..192964
/locus_tag="A1C_01015"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <193658..193852
/locus_tag="A1C_01015"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cl00162"
/db_xref="CDD:185805"
misc_feature <193859..194308
/locus_tag="A1C_01015"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(194150..194152,194195..194200)
/locus_tag="A1C_01015"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(194240..194242,194258..194260,194276..194278,
194285..194290,194300..194302)
/locus_tag="A1C_01015"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(194789..195817)
/locus_tag="A1C_01020"
/db_xref="GeneID:5644717"
CDS complement(194789..195817)
/locus_tag="A1C_01020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493042.1"
/db_xref="GI:157825322"
/db_xref="GeneID:5644717"
/translation="MEDVYSLTPHPMRYACLHYLQLLSLPISLAFYVTKLCFTANPVW
TWIGFDILYKKMDQAIAKKILHGLPDETAAGQNIPKIVEYVLKKYEENPTLIPLVEHT
FMQKFLAKIDKCIPAFSKIVNFWNAGGISYSDEIQTKRELINVIYKQIVSKAYEVGKK
GGKLEITDVKALFPEIDFEDKISTKSANLEIEKLEITDVKALFPEIDFEDKINTKSAN
LEIEKVEVNNEEHLVSEMYINQKHEEATVTTNANNGINPLLNLFMLKALRDEMCQEAL
QTCVERCIAEIQISKNQACRYEDSLARLQLCSDYNYDDNNTCILEQSVSYLGQTYEHL
APPMIACY"
gene 196090..197574
/locus_tag="A1C_01025"
/db_xref="GeneID:5644718"
CDS 196090..197574
/locus_tag="A1C_01025"
/EC_number="3.4.11.1"
/note="catalyzes the removal of N-terminal amino acids
preferably leucine from various peptides"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_001493043.1"
/db_xref="GI:157825323"
/db_xref="GeneID:5644718"
/translation="MNEESSINQGLVVFIDEQLKLDSNLIGLDQQHHGLIAKTIQNKL
QFTGKYGQINVIPSVIKSGEVKYLIIVGLGNEEKLTEAKIEELGGKILQHATVCKIST
IGLKLTNRISRFTSQTFASLVASGAFLASYRFDKYRTTLKEAEKFAVESIEIFTDNST
ETAKLFKVKKLIAEAVFFTRDICNEPSNIKTPQVYAERIVDILEPFGVDVDVIGEREM
KNLGMGALLGVGQGSQNESKLVVMEYKGGSKEAPIIALVGKGVIFDTGGISLKPSSNM
HLMRYDMGGSAAVAGAMIAVAGQKLPVNIVGVIGLVENMPSGNAQRPGDVVTTMSGQT
AEVLNTDAEGRLVLADAVWYAQEKFKPKYVIDVATLTGAITVALGSTYAGCFSNNDEL
ADKLIKVGKEVNEKLWRMPLHDEYDAMINSDIADMANIGNVPGAAGSCIAAHFIKRFI
KDGVYWAHLDIAGVANSNKASALGPKGAVGYGVRLLEKFIKEYI"
misc_feature 196117..197559
/locus_tag="A1C_01025"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature 196120..197568
/locus_tag="A1C_01025"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:179165"
misc_feature order(196213..196218,196258..196260,196288..196290,
196333..196335,196639..196641,196645..196653,
196783..196785,196789..196791,196876..196878,
196894..196896,196909..196911,196918..196920,
196927..196932,197026..197028,197032..197043,
197047..197049,197053..197067,197083..197085,
197089..197091,197101..197103,197212..197226,
197233..197235,197311..197316,197320..197322,
197335..197337,197341..197346,197359..197361,
197365..197367,197398..197403,197407..197409,
197515..197517)
/locus_tag="A1C_01025"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(196864..196866,196879..196881,196900..196902,
196933..196935,197110..197112,197116..197118,
197122..197124,197197..197199)
/locus_tag="A1C_01025"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(196864..196866,196879..196881,196933..196935,
197110..197112,197116..197118)
/locus_tag="A1C_01025"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 197755..198555
/locus_tag="A1C_01030"
/db_xref="GeneID:5644719"
CDS 197755..198555
/locus_tag="A1C_01030"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="chromosome partitioning protein"
/protein_id="YP_001493044.1"
/db_xref="GI:157825324"
/db_xref="GeneID:5644719"
/translation="MNTINKPYIFVIGNEKGGAGKTTCCMHLIIALLYQNYSVVSIDT
DSRQGSLTSYLKNRDLYNQQNPDKAVLVPKHFHISEGEIEEQTKNFEQVLKNNPDSDY
IVIDTPGSHTPLSSVAHSYADTIITPINDSFLDLDVIAIIDSNDEIISPSIYSQMIWE
QKMERASRDKISIDWVILRNRLSNLDALNKRRVWNVLSKLAKRINFKLVEGFSERVIY
RELFLQGLTLLDLKTAKYDRAFNSSHVLARQELRNFLAFLGIKDTFKA"
misc_feature 197776..198534
/locus_tag="A1C_01030"
/note="ATPase MipZ; Region: MipZ; pfam09140"
/db_xref="CDD:204149"
misc_feature 197779..198198
/locus_tag="A1C_01030"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 197800..197820
/locus_tag="A1C_01030"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature order(197818..197820,198070..198072)
/locus_tag="A1C_01030"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 198641..199075
/locus_tag="A1C_01035"
/db_xref="GeneID:5645716"
CDS 198641..199075
/locus_tag="A1C_01035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493045.1"
/db_xref="GI:157825325"
/db_xref="GeneID:5645716"
/translation="MPNIAENISKLPEEQEKVNKIVDQYKNLTPEEQKIVDRKLKLHF
TKEEREQDELKSRMHNIRSNLSNKDQEKLQAGSNSIGEIAKDVLSLVKGIINLVENVA
EIMKNPKKAIYEWIKGELNQVKPQQQNYPQLPSKPKAAAISR"
gene 199154..200962
/gene="aspS"
/locus_tag="A1C_01040"
/db_xref="GeneID:5645717"
CDS 199154..200962
/gene="aspS"
/locus_tag="A1C_01040"
/EC_number="6.1.1.12"
/note="catalyzes a two-step reaction, first charging an
aspartate molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; contains discriminating
and non-discriminating subtypes"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_001493046.1"
/db_xref="GI:157825326"
/db_xref="GeneID:5645717"
/translation="MHKYRTHNCSELQISDVGQEVKLSGWVHRRRDHGNLVFIDLRDH
YGIIQIVFTDQNPQLMEDASRLRYESVVTVRGTVVARSEDTINNTLPTGHVEVLAVEF
IVESAADTLPFVINTEKDAPEDSRLKHRFLDLRREKLHNNIILRSQIISHIRHLMMAR
GFTEFQTPILTASSPEGARDFLVPSRMHPGKFYALPQAPQQFKQLLMVSGFDRYFQIA
PCFRDEDARADRSPGEFYQLDLEMSFVTQEDVFSTIEPVMYDLFNKFTDKKVSATPFV
RIPYNESMLKYGSDKPDLRNTIIISDVTEIFRDSDFTIFRENIRKGSIVRAIPAPKAA
TMPRSFFDKMIEFAISEGAGGLGYIQFSETGETKGAVAKFLSTQQLDSLKATASISNG
DAVFFVSDKKEKAARLAGKVRIRLGEELDLLEKDCFKFCWITDFPFYELNEETGKIDF
SHNPFSMPQGGLEALENAKTTEALLELNAYQYDIVCNGIELSSGAIRNHKPDIMYKAF
SIAGYSEEEVNKRFGGMIRAFKFGAPPHGGIAPGIDRIVMLLAEATNIREVIAFPLNQ
QAEDLLMNAPSYVEDKALKELSIMLSPSARKNAKKE"
misc_feature 199157..200932
/gene="aspS"
/locus_tag="A1C_01040"
/note="aspartyl-tRNA synthetase; Validated; Region: aspS;
PRK00476"
/db_xref="CDD:179042"
misc_feature 199166..199570
/gene="aspS"
/locus_tag="A1C_01040"
/note="EcAspRS_like_N: N-terminal, anticodon recognition
domain of the type found in Escherichia coli aspartyl-tRNA
synthetase (AspRS), the human mitochondrial (mt) AspRS-2,
the discriminating (D) Thermus thermophilus AspRS-1, and
the nondiscriminating (ND)...; Region: EcAspRS_like_N;
cd04317"
/db_xref="CDD:58587"
misc_feature order(199166..199168,199175..199177,199229..199231,
199283..199285,199469..199471,199475..199480)
/gene="aspS"
/locus_tag="A1C_01040"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58587"
misc_feature order(199238..199240,199244..199252,199265..199267,
199298..199300,199352..199354,199394..199396,
199412..199414,199439..199441,199487..199489)
/gene="aspS"
/locus_tag="A1C_01040"
/note="anticodon binding site; other site"
/db_xref="CDD:58587"
misc_feature 199580..>200017
/gene="aspS"
/locus_tag="A1C_01040"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature order(199589..199597,199604..199606,199613..199618,
199625..199627,199634..199645,199649..199669,
199688..199690,199697..199711,199721..199732,
199775..199780,199787..199792,199808..199810,
199820..199822,199853..199855,199883..199885,
199898..199900)
/gene="aspS"
/locus_tag="A1C_01040"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73228"
misc_feature 199655..199669
/gene="aspS"
/locus_tag="A1C_01040"
/note="motif 1; other site"
/db_xref="CDD:73228"
misc_feature order(199679..199687,199745..199747,199751..199753,
199760..199762,199817..199819,199823..199825,
199838..199846,199856..199858,199862..199864)
/gene="aspS"
/locus_tag="A1C_01040"
/note="active site"
/db_xref="CDD:73228"
misc_feature 199814..199825
/gene="aspS"
/locus_tag="A1C_01040"
/note="motif 2; other site"
/db_xref="CDD:73228"
misc_feature 200096..200377
/gene="aspS"
/locus_tag="A1C_01040"
/note="GAD domain; Region: GAD; pfam02938"
/db_xref="CDD:145868"
misc_feature <200414..200854
/gene="aspS"
/locus_tag="A1C_01040"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature order(200621..200626,200636..200638,200765..200770,
200774..200779,200786..200788)
/gene="aspS"
/locus_tag="A1C_01040"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(200777..200779,200786..200788)
/gene="aspS"
/locus_tag="A1C_01040"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene complement(201228..203342)
/locus_tag="A1C_01045"
/db_xref="GeneID:5645718"
CDS complement(201228..203342)
/locus_tag="A1C_01045"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493047.1"
/db_xref="GI:157825327"
/db_xref="GeneID:5645718"
/translation="MYKEKTQQELLLQEQLFKALKTEGTELNAKISRACEAIASSAID
LSKDQSHTAASLYVNQIALADLDGRGLAKVTTIIKDAFPGDKYRKFREIIDAPLLQHL
VMEESIKRQVELENSRYNSDYKKFEEISNPNDPKKAIDAMLRDKKVAKQTEFEKKRKK
AAGVSAGYVAQDELGNTFILKHFYRTHAACEKIQDNNARQQAIDDRRDGMQELIGSTM
YQFLLHDRAPKEGLVKADEKHPDALYVRSKFFDNAVTLTEFSGLSDHTKVRSDDQNLK
KLKGFEKAIAACHMLGEADYHAGNLMVQDGKTITKIDHGRSFLAFHKDFGSMTQSTNR
MFSHPGVGYSAAIKKGNLSFSIDKYSESLNQMISQFDEQQMAAIVDQKIDELKQAGFD
PKNVALPTKINNFDDLRQYYKSSIKANLINMQEIAKGAEIVTKFTNVSPKFNNGGWLE
AFAHSPVKDPVLYAIYNNIKIEGINAKDWAYEHNYQIHTYIGLKQAVVKEQQWCKDLE
GKWTEKEVEVQKDTVEVKITDPVKSMREQDKSVGAKLESLIVAFTKQAITQHVTDKKV
TKFYDNIMKTLKKEKYLTEQDIEGIKKDLKYWDNIENTTNLLNAKSFKLNVKDTTYYK
VGNFCEKIGLSNIANYCMRQISPNNLSKIHDTQKLIAASIKIGNILQEKGNRGIKPKR
VEAIKVIAFSQLQAKSENHRQR"
gene complement(203364..204074)
/locus_tag="A1C_01050"
/db_xref="GeneID:5645719"
CDS complement(203364..204074)
/locus_tag="A1C_01050"
/note="COG0670 Integral membrane protein, interacts with
FtsH"
/codon_start=1
/transl_table=11
/product="integral membrane protein"
/protein_id="YP_001493048.1"
/db_xref="GI:157825328"
/db_xref="GeneID:5645719"
/translation="MIDYTKTLTATSKNKTFDEGLRKYMLKVYNYMALALLLTGITAI
TTISVEPIYNLMFQTGFGTVIMFAPLGIALYFFMGFGRMNLNTAQILFWVYAGLTGMS
LAYLALVYTGTSIARTFFICSSVFGAMSLYGYNTSRDLTSMGSFFAMGLMGLIIASLV
NLFLKSSAISFATSLIGIVVFMGLIAWDTQKIKSMYYMAGNDEVGQKFSIMAAFTLYL
DFINLFLYLMKFLGNRRD"
misc_feature complement(203379..204017)
/locus_tag="A1C_01050"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene complement(204120..204857)
/locus_tag="A1C_01055"
/db_xref="GeneID:5645720"
CDS complement(204120..204857)
/locus_tag="A1C_01055"
/EC_number="1.3.1.26"
/note="catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_001493049.1"
/db_xref="GI:157825329"
/db_xref="GeneID:5645720"
/translation="MINIGLSGSTGKMGKTILARIDKFKDCKISAKFNSTDDLDDLNN
FCKNSDVIIDFSTPEILEKLINYALKHNTKLVIGTTGLQPKHFKLLEKAAKTLPILYS
ANMSTGANLLSYLAKKATKILDDYDIEILETHHRNKKDSPSGTAIMLAETIAREKGLN
IVFNRGNRPRSEKEIGISSLRGGNVHSIHEISLLGDDEIITLKHEALNKNSFVIGAIK
SAIWLQDKSPALYSMQDIYNYSLQKQL"
misc_feature complement(204144..204857)
/locus_tag="A1C_01055"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(204543..204854)
/locus_tag="A1C_01055"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(204150..204536)
/locus_tag="A1C_01055"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(204876..205361)
/locus_tag="A1C_01060"
/db_xref="GeneID:5645721"
CDS complement(204876..205361)
/locus_tag="A1C_01060"
/note="COG1853 Conserved protein/domain typically
associated with flavoprotein oxygenases, DIM6/NTAB family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493050.1"
/db_xref="GI:157825330"
/db_xref="GeneID:5645721"
/translation="MAGTVTASQFKDAMSRFPKGVTIITTNCNNELFGFTASSFTSVS
LKPPLILFCINKNSFSINSFQKSDKFAVSILAENQIDISRHFAKSQPNKFTKIAYELG
NKTDCPLINGATCHIECNKYDSYDAGDHVIFIGEVINTTIKNDLKPLLYFHKLYARCI
C"
misc_feature complement(204894..205322)
/locus_tag="A1C_01060"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene complement(205346..206071)
/locus_tag="A1C_01065"
/db_xref="GeneID:5645722"
CDS complement(205346..206071)
/locus_tag="A1C_01065"
/note="COG0834 ABC-type amino acid transport/signal
transduction systems, periplasmic component/domain"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_001493051.1"
/db_xref="GI:157825331"
/db_xref="GeneID:5645722"
/translation="MKFLKIFLLSFLLVSCNKKETDKTLIVGTAADNPPYEFIQDGEI
VGIDIDIIKAISERLNKKVIIKNFDFNGLLAALVSENIDVAVAELSITPERAEYISFS
DHYATARFAIIYRTGDNIKNSKDLENKIVGVQLGSVLEKKAQDLSQTMNIKVHSLANH
LMLVEELKARVIDAIISEEFQGKKLKENNSNLESSPLEEFSSNFAIGMSKNSGLISEV
NEAIDSLKKDGTINKIMKKWLGQ"
misc_feature complement(205349..205999)
/locus_tag="A1C_01065"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(205355..205999)
/locus_tag="A1C_01065"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(205538..205540,205658..205660,
205787..205789,205862..205864,205973..205975))
/locus_tag="A1C_01065"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(205559..205561,205577..205579,
205589..205591))
/locus_tag="A1C_01065"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(205451..205468)
/locus_tag="A1C_01065"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(206276..207727)
/gene="gatB"
/locus_tag="A1C_01070"
/db_xref="GeneID:5645053"
CDS complement(206276..207727)
/gene="gatB"
/locus_tag="A1C_01070"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_001493052.1"
/db_xref="GI:157825332"
/db_xref="GeneID:5645053"
/translation="MAYIEGNTGKWEYVIGLEIHAQISSKSKLFSGSSTIFAASPNSQ
VSYVDAAMPGMLPVLNQHCVHQAIKTGLGLKAKINKYSVFDRKNYFYADLPQGYQISQ
FYYPIVQNGTMEIPTSTGDLKTIRINRLHLEQDAGKSMHDQSPHYSFIDLNRAGIGLM
EIVTEPDISSPYEAAEFVKKLRNLLRYIGSCDGDMEKGSMRCDANISVRRSGEPLGTR
CEIKNINSIRNIVKAIEFEAKRQVDLLESGEAIIQETRLFNADSGETRTMRFKEEALD
YRYFPDPDLLPLVISDKLIDELKANLPELPDQKIEKYTKEFGLSKYEAEVIVADESVA
DYFEKAVNECNPKMLTNWLTSELFGQLNKASIGINECKITPSDFAKLIKLIENGIISG
KIAKTVFEIMFATGKAPDKIVEEQGLVQVSDNNVLKTVIDEVIAENPELVEGYRSGKD
KLFGFFVGQVMKKTGGKANPTLLNQLLNEKLSS"
misc_feature complement(206285..207709)
/gene="gatB"
/locus_tag="A1C_01070"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature complement(206834..207694)
/gene="gatB"
/locus_tag="A1C_01070"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature complement(206285..206722)
/gene="gatB"
/locus_tag="A1C_01070"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene complement(207904..209382)
/gene="gatA"
/locus_tag="A1C_01075"
/db_xref="GeneID:5645054"
CDS complement(207904..209382)
/gene="gatA"
/locus_tag="A1C_01075"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_001493053.1"
/db_xref="GI:157825333"
/db_xref="GeneID:5645054"
/translation="MTELNKLTVADSIKGLKNKDFTSKELVNAHITQIEKHRNLNAYV
TETFDLALKQAEAADQNYAQNQPRTLEGIPFAAKDLFCTKGIRTTACSNILKNFVPNY
ESSVTQNIFDKGGVMLGKTNMDEFAMGSANITSCFGNVISPWKANDDNADLVPGGSSG
GSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAG
IFTRSVLDSSIMLEAMMGFDAKDSTSIKAEVPELQSAIGSSMKNIKIGVPLNLGEGGI
EPDVMKIWQDTIELLKNAGAEIVDIILPHAKYGVAVYYVIAPAEASSNLSRYDGVRYG
LRVERENMTLDEMYEMTRSAGFGEEVKRRIMIGTYVLSSNCMDAYYLKAQKVRRLVAN
DFNNAFEKVDAIVLPAAPTEAFKIAEKQNDPTIMYLNDLFTIPASLAGLPCASIPAGL
SARGLPLGMQIIGKQLDEYNVLKVASTIESGVKHIKFEPAGF"
misc_feature complement(207916..209382)
/gene="gatA"
/locus_tag="A1C_01075"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature complement(207946..209337)
/gene="gatA"
/locus_tag="A1C_01075"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene complement(209385..209687)
/gene="gatC"
/locus_tag="A1C_01080"
/db_xref="GeneID:5645055"
CDS complement(209385..209687)
/gene="gatC"
/locus_tag="A1C_01080"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma
proteins contain an N-terminal fusion to an unknown
domain"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
C"
/protein_id="YP_001493054.1"
/db_xref="GI:157825334"
/db_xref="GeneID:5645055"
/translation="MITKEEARKIAKLARLKFEKDTVEKFSTQLGTIMDMIDILNEID
CKDIEPLTSVSNMNARMREDAVTSSDLSNKLFDNVSGNSAQLAKEVKYFITPKVVE"
misc_feature complement(209388..209687)
/gene="gatC"
/locus_tag="A1C_01080"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit C;
Reviewed; Region: gatC; PRK00034"
/db_xref="CDD:178810"
gene complement(209843..209989)
/gene="frr"
/locus_tag="A1C_01085"
/db_xref="GeneID:5645056"
CDS complement(209843..209989)
/gene="frr"
/locus_tag="A1C_01085"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_001493055.1"
/db_xref="GI:157825335"
/db_xref="GeneID:5645056"
/translation="MEEVAYILEVPETICNINGYKLQDILKKQKKEVNGGFDNKIVLE
KIIN"
misc_feature complement(209870..>209986)
/gene="frr"
/locus_tag="A1C_01085"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain superfamily; Region: NTP-PPase;
cl16941"
/db_xref="CDD:212390"
gene complement(210244..210804)
/gene="frr"
/locus_tag="A1C_01090"
/db_xref="GeneID:5645057"
CDS complement(210244..210804)
/gene="frr"
/locus_tag="A1C_01090"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_001493056.1"
/db_xref="GI:157825336"
/db_xref="GeneID:5645057"
/translation="MDTETLKKILQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVE
AYGSKMLLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLP
IPALTEERRKELVKLAHKYGEDAKISLRNIRRDGNEELKKLEKDNIIAKDEHHNLSEQ
VQKLTDEYSSKVDSAIKQKEQDIMTV"
misc_feature complement(210247..210801)
/gene="frr"
/locus_tag="A1C_01090"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(210253..210789)
/gene="frr"
/locus_tag="A1C_01090"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature complement(order(210487..210498,210706..210717))
/gene="frr"
/locus_tag="A1C_01090"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene complement(211018..211755)
/gene="pyrH"
/locus_tag="A1C_01095"
/db_xref="GeneID:5645058"
CDS complement(211018..211755)
/gene="pyrH"
/locus_tag="A1C_01095"
/note="Catalyzes the phosphorylation of UMP to UDP"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_001493057.1"
/db_xref="GI:157825337"
/db_xref="GeneID:5645058"
/translation="MISNINALKYKKVLLKVSGEALMGDKQFGHEYEVIKKISSDIKE
VIDLGVEVAIVVGGGNIYRGINAALVGMDRASADYIGMLATVINALTLQNVMESLDIY
TRVLSAIPMMSVCEPYIRRKAKRHMEKKRVVIFAGGTGNPFCTTDSAAVLRAIEMNCD
MLLKATQVDGVYDADPKKNPDAKKYCTINYKDVITNNLQVMDTAAIAVARENKLPIRI
FSIKEQGNFARVIQDKGEYTTIEESVV"
misc_feature complement(211033..211725)
/gene="pyrH"
/locus_tag="A1C_01095"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:58620"
misc_feature complement(order(211231..211236,211240..211242,
211246..211248,211255..211260,211315..211320,
211579..211587,211696..211701,211708..211710))
/gene="pyrH"
/locus_tag="A1C_01095"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(211318..211326,211330..211335,
211339..211341,211510..211515,211522..211524,
211564..211569,211579..211587))
/gene="pyrH"
/locus_tag="A1C_01095"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(211120..211122,211288..211293,
211300..211302,211327..211335,211339..211341,
211363..211365,211381..211383,211390..211392,
211402..211404,211444..211446,211474..211476,
211495..211497,211516..211521,211543..211548))
/gene="pyrH"
/locus_tag="A1C_01095"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58620"
gene complement(211759..212076)
/locus_tag="A1C_01100"
/db_xref="GeneID:5645059"
CDS complement(211759..212076)
/locus_tag="A1C_01100"
/note="subunit E of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_001493058.1"
/db_xref="GI:157825338"
/db_xref="GeneID:5645059"
/translation="MLMLTKIKFILYFPWLLLEIWKSAFSVIKIIWQRKIEIEPIFEW
IDAEGLEEIGKVIYSNSITLTPGTVTLDINNNMLLVHALNKSSITDLQRDRMIKKIQN
NLK"
misc_feature complement(211768..212076)
/locus_tag="A1C_01100"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK06580"
/db_xref="CDD:180628"
gene complement(212060..213619)
/locus_tag="A1C_01105"
/db_xref="GeneID:5645138"
CDS complement(212060..213619)
/locus_tag="A1C_01105"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein B"
/protein_id="YP_001493059.1"
/db_xref="GI:157825339"
/db_xref="GeneID:5645138"
/translation="MSNDNLQPPALSKKQLFAFFGMVVGMFMSVLDIQIVASSLSVIA
AGLAASSDELSWVQTSYLIAEVIIIPITGFLARLLSTRVSYFIAALGFTVMSVLCALA
TNIESIIIFRALQGFFGGAMIPTVFSTVFIIFPASQRPTVTILIGLVVTVAPTLGPTL
GGYITEILSWHFMFVLNVIPGIFVCTVVFLYGDFDKPNYKLLKNFDFLGILLMALTLG
LLQYVLEEGNKKGWLEDNLILFLSIAVALGFILLIIRELTCINPILDLKTFLDKDFTF
GCLYSFVMGIGLYGAVYILPLFLFTIAGYNTLQIGATMMVTGGAQFLSAPLAGRMLGL
GVDLRLMLIIGLGGFALGCHLNSFLTPDSKFAAFVLPQVVRGLSLMFCFIPTNNVALG
NMPKERVGNASGLYNLTRNLGGAVGLAIISTILTNDTKIFMQYLSENISSTSIIALEY
LDSYTELLSGKALHPDTASYLLLANKLNNDAFVIAINNIFNMIGLLFVFIMLLIPFTS
NIKLTGNVNAH"
misc_feature complement(212099..213535)
/locus_tag="A1C_01105"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature complement(<213047..213529)
/locus_tag="A1C_01105"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(213158..213160,213176..213181,
213188..213193,213227..213229,213236..213241,
213248..213253,213260..213265,213401..213406,
213410..213415,213425..213427,213434..213439,
213446..213448,213497..213502,213506..213514,
213521..213523))
/locus_tag="A1C_01105"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(212339..>212815)
/locus_tag="A1C_01105"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 213859..214062
/locus_tag="A1C_01110"
/db_xref="GeneID:5645139"
CDS 213859..214062
/locus_tag="A1C_01110"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493060.1"
/db_xref="GI:157825340"
/db_xref="GeneID:5645139"
/translation="MQSPAQKVISFSEHKSDIERITKSIEEGWAIVKLVPNKDRFIGL
LEKISHAEDETIYIPPIKKIIVN"
misc_feature 213859..214059
/locus_tag="A1C_01110"
/note="Protein of unknown function (DUF2674); Region:
DUF2674; pfam10879"
/db_xref="CDD:151328"
gene 215437..215658
/locus_tag="A1C_01115"
/db_xref="GeneID:5645140"
CDS 215437..215658
/locus_tag="A1C_01115"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001493061.1"
/db_xref="GI:157825341"
/db_xref="GeneID:5645140"
/translation="MQEFAYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGE
TINDDLFLIDYTSIYNISAYSRELFSYSG"
misc_feature <215440..215559
/locus_tag="A1C_01115"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(215661..215813)
/locus_tag="A1C_01120"
/db_xref="GeneID:5645141"
CDS complement(215661..215813)
/locus_tag="A1C_01120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493062.1"
/db_xref="GI:157825342"
/db_xref="GeneID:5645141"
/translation="MTLVMIVNEEAFIKQSDVINLPKWEKSFYYIISVGHYENYDAAM
DCIIKN"
gene complement(216062..216137)
/locus_tag="A1C_t06897"
/db_xref="GeneID:5645142"
tRNA complement(216062..216137)
/locus_tag="A1C_t06897"
/product="tRNA-Thr"
/db_xref="GeneID:5645142"
gene complement(216379..218673)
/locus_tag="A1C_01125"
/db_xref="GeneID:5645143"
CDS complement(216379..218673)
/locus_tag="A1C_01125"
/note="COG4775 Outer membrane protein/protective antigen
OMA87"
/codon_start=1
/transl_table=11
/product="Outer membrane protein omp1"
/protein_id="YP_001493063.1"
/db_xref="GI:157825343"
/db_xref="GeneID:5645143"
/translation="MSSKLTILLLTIFYYHIALADSVIHKITIEGNHRVERSTIESYL
KLKVGETYNNSKEDEAIKRLYATSLFRNINMHITNEGNLIVGVTETPFISSVVFSGNS
KIKTHMLAKEIYTMSGESLSQAKIELDVKKILEIYKRSGRFATTVTPKIEHLENNRVK
VIFDIAEGPKTAIKYIYFSGNENYSDSELKSVILTKESRWFRFLESNDTYDPDRVEYD
QELLREFYQSVGFADFRVISASAELNNTKEYFTITYSIDEGEKYSFGNVTIDNKLPNI
NITSLNKIVTIKQGKVFNMKTVDDMAKKIGEYFTANGYHAVNVYPDIIKNANHTADIK
FIIEKADKVYINKINIINNLKTEDYVIRREFKTEEGDIINRSYIEKGERNLRNLDYFE
KVAISLAPTKAKDKYDVDVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVGTGKL
LNTGVQVSKNSTSYYGGITEPNFLDRDLSLGVNAFRNYTGRGASVLNTTDQNYKLNST
GVKISLGYEIKETLGHEIDYLIKRDILSAPSQSSSIFLNEQMGRFITSAIGHTITYDQ
TDSKIVPKNGYLISGTQEFAGVGGDNKYIKHEVDGKYYKSFIHNKLTLKLSAAGGDIA
GLGGKIVRISDRFNLGDYSLRGFASGGVGPREKNTNEGLGGERYYTFSTELNFPTPVP
EEFNLTGAVFMDLGSVWGVGLNKKQYKTPNGFYNDKSLRTSIGFGFIWVTRFAPIRMD
WGFPVKKKKYDDTQHFHLRFSTHL"
misc_feature complement(216385..218607)
/locus_tag="A1C_01125"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:200260"
misc_feature complement(<218476..218607)
/locus_tag="A1C_01125"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(218170..218403)
/locus_tag="A1C_01125"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(217897..218157)
/locus_tag="A1C_01125"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(217660..217890)
/locus_tag="A1C_01125"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(<217510..217611)
/locus_tag="A1C_01125"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; cl10520"
/db_xref="CDD:213120"
misc_feature complement(216382..217347)
/locus_tag="A1C_01125"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene complement(218955..220028)
/locus_tag="A1C_01130"
/db_xref="GeneID:5645194"
CDS complement(218955..220028)
/locus_tag="A1C_01130"
/note="COG0750 Predicted membrane-associated Zn-dependent
proteases 1"
/codon_start=1
/transl_table=11
/product="membrane-associated zinc metalloprotease"
/protein_id="YP_001493064.1"
/db_xref="GI:157825344"
/db_xref="GeneID:5645194"
/translation="MLSIIGFIITISILVFIHEFGHYCIARYFNVKVEDFSIGFGKEL
IGITDTKGVRWKICLIPLGGYVKIYGYDRSLVEQTKEVNEKVAFYAKSCLERFLIVAA
GPLINYLLAIIIFAGFYCYFGKTEIPPIISDVVALSPAERADLREGDKIVKVNNKSVK
DFVDVQKEILINGFSSSTLTIERKSEEFTVNIMPQEIIISPHEEKKVKKTLHIGIIAK
NEPIHTKIGILRGFWEAINTTIDMSALTLKAISQMIVGKRSLDEIGGPVAIAKESGKS
IAGGTQMYLLFIAMLSVNLGLLNLLPIPVLDGGHLIFIIYEAITDRLPNPQTKNILLQ
LGAAIIIFLIILSVFNDIQNLLS"
misc_feature complement(218961..219977)
/locus_tag="A1C_01130"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:31093"
misc_feature complement(<219675..219977)
/locus_tag="A1C_01130"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(order(219963..219965,219972..219977))
/locus_tag="A1C_01130"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(219447..219683)
/locus_tag="A1C_01130"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature complement(order(219519..219524,219531..219536,
219663..219665,219669..219680))
/locus_tag="A1C_01130"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature complement(218967..>219176)
/locus_tag="A1C_01130"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:209123"
misc_feature complement(219123..219134)
/locus_tag="A1C_01130"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene 220211..220681
/gene="nusB"
/locus_tag="A1C_01135"
/db_xref="GeneID:5645195"
CDS 220211..220681
/gene="nusB"
/locus_tag="A1C_01135"
/note="Regulates rRNA biosynthesis by transcriptional
antitermination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_001493065.1"
/db_xref="GI:157825345"
/db_xref="GeneID:5645195"
/translation="MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRN
DSSITNLTGNLKISLSISHFKILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRAL
LRAGIYELLFYPTTPAKVVINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS"
misc_feature 220229..220672
/gene="nusB"
/locus_tag="A1C_01135"
/note="transcription antitermination protein NusB;
Reviewed; Region: nusB; PRK00202"
/db_xref="CDD:178926"
misc_feature 220241..220249
/gene="nusB"
/locus_tag="A1C_01135"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29564"
gene 220678..221361
/locus_tag="A1C_01140"
/db_xref="GeneID:5645196"
CDS 220678..221361
/locus_tag="A1C_01140"
/note="COG0293 23S rRNA methylase"
/codon_start=1
/transl_table=11
/product="ribosomal RNA large subunit methyltransferase J"
/protein_id="YP_001493066.1"
/db_xref="GI:157825346"
/db_xref="GeneID:5645196"
/translation="MTNNLSGYRNKFVRVKTSKKRTVSSGNWLRRQLNDPYVAKARIE
GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLIKASDNSLNNKIISI
DLLEIEPIIGVEFLQKDFFEENTEELIIQVLDGKADIVMSDMASNTTGHKATDHIRTL
LLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKCEFKTVKHFKPSSSRSESTE
IYLVAINKK"
misc_feature 220747..221358
/locus_tag="A1C_01140"
/note="23S rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: FtsJ; COG0293"
/db_xref="CDD:30641"
misc_feature 220882..221238
/locus_tag="A1C_01140"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(220894..220914,220984..220989,221029..221037,
221104..221106)
/locus_tag="A1C_01140"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(221399..222481)
/locus_tag="A1C_01145"
/db_xref="GeneID:5645197"
CDS complement(221399..222481)
/locus_tag="A1C_01145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493067.1"
/db_xref="GI:157825347"
/db_xref="GeneID:5645197"
/translation="MVIPINKEADMSKYKNSKHISTKKLAYIGLDLAYKTDDLNTYNL
EASKVNAQLTDSGWEILTASCDYVNTAKYGYKAVAFINKETKEVHITSAGTKFNISDF
LDDLLIALHYLPTKLTPLQEFVNEVINKLGGLNKATEYIFNTSGHSLGAIYADLSLVE
IHSRNLPFNKSTTFDSPGSKPIIERAIKKNVFTEKVTTPIEELATHSKIYNAKHNLVN
ITNKHLGKTIMVLPSKTTELSQLEAWASYLYNFAKQKAIKYLGINGIVEGFEEIIAGI
SRHGLVNFSDLKQNITLTIDDWETETQKYAKHTLNFKKNLYNQIVETETGANLVEIYN
NFQSCSQEYAQEVKTTGDISNYHLVC"
gene 222602..222763
/locus_tag="A1C_01150"
/db_xref="GeneID:5645198"
CDS 222602..222763
/locus_tag="A1C_01150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493068.1"
/db_xref="GI:157825348"
/db_xref="GeneID:5645198"
/translation="MLTLLVRNLFVSNKPITYVSLIAKAKADYSFYTKLASGSFLAGI
GSFFHLVVG"
gene 222823..223554
/locus_tag="A1C_01155"
/db_xref="GeneID:5645199"
CDS 222823..223554
/locus_tag="A1C_01155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493069.1"
/db_xref="GI:157825349"
/db_xref="GeneID:5645199"
/translation="MDSNEQIKLFTKAHEATKSEEYLATSSLGSFVYGTAVDKNGVDQ
LTGKYIEGTNGKIISNAITRVPTLSLTEDGVGYKHNGGYEIVESTDRALYQEIPGVKG
QYTNKLVMDTSILSLHGCIIQQLIQNCYSSDDIEKALSLGTIEKRESYKNKKLAEYKP
NLTSTLWHGTEQAMKNKEVELSQEIQKYAAINEAYKALFNYHTSGTSEEQEEQFYSLD
YNNLNDDQTQILGDEGDEGYISDIA"
gene complement(223613..224053)
/locus_tag="A1C_01160"
/db_xref="GeneID:5645200"
CDS complement(223613..224053)
/locus_tag="A1C_01160"
/note="COG2867 Oligoketide cyclase/lipid transport
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493070.1"
/db_xref="GI:157825350"
/db_xref="GeneID:5645200"
/translation="MASFEQIKVLPYQLQKLFDLVWDVESYPKFLPWCSASRIISANN
QEVIAELVIQLKGFSEKYNSRVTSEITDDGIYLINTVAISGPFEYLTSTWQFVPCTAG
TELKFFIDFKMKSVILDKLIGTYFSKATEKMIIAFEKRAKEVIK"
misc_feature complement(223622..224032)
/locus_tag="A1C_01160"
/note="Coenzyme Q-binding protein COQ10p and similar
proteins; Region: COQ10p_like; cd07813"
/db_xref="CDD:176855"
misc_feature complement(order(223643..223645,223652..223660,
223664..223672,223676..223690,223721..223723,
223727..223729,223733..223735,223739..223741,
223766..223768,223772..223774,223778..223783,
223814..223816,223820..223822,223850..223852,
223856..223858,223862..223864,223895..223897,
223901..223903,223907..223909,223913..223915,
223943..223945,223988..223993,223997..224005,
224030..224032))
/locus_tag="A1C_01160"
/note="putative coenzyme Q binding site [chemical
binding]; other site"
/db_xref="CDD:176855"
gene complement(224058..224318)
/locus_tag="A1C_01165"
/db_xref="GeneID:5645615"
CDS complement(224058..224318)
/locus_tag="A1C_01165"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATPase and permease"
/protein_id="YP_001493071.1"
/db_xref="GI:157825351"
/db_xref="GeneID:5645615"
/translation="MTNEKYNNISEEDNLQLNSESFRQDEFKSKSTERTYVREYRLNS
KNSPVSSFVNDAVPKAKEIGGVKGLEPTRYDDWQHKGKVTDF"
misc_feature complement(224148..224276)
/locus_tag="A1C_01165"
/note="Rickettsial palindromic element RPE3 domain;
Region: RPE3; TIGR03775"
/db_xref="CDD:163487"
misc_feature complement(224061..>224153)
/locus_tag="A1C_01165"
/note="Uncharacterized conserved small protein [Function
unknown]; Region: COG5508"
/db_xref="CDD:35067"
misc_feature complement(224061..>224153)
/locus_tag="A1C_01165"
/note="Protein of unknown function (DUF1674); Region:
DUF1674; pfam07896"
/db_xref="CDD:203796"
gene 224328..225092
/locus_tag="A1C_01170"
/db_xref="GeneID:5645616"
CDS 224328..225092
/locus_tag="A1C_01170"
/note="in Escherichia coli RsmE methylates the N3 position
of the U1498 base in 16S rRNA; cells lacking this function
can grow, but are outcompeted by wild-type; SAM-dependent
m(3)U1498 methyltransferase"
/codon_start=1
/transl_table=11
/product="16S ribosomal RNA methyltransferase RsmE"
/protein_id="YP_001493072.1"
/db_xref="GI:157825352"
/db_xref="GeneID:5645616"
/translation="MRFNRIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRIFN
GTEGEFLAHITAIGKHNISVRLKEQLKKPYTESALTLAVAIIKQDKLMLAINMATQLG
ITKIIPLITSRCQFRTVNIERLTKCVIEATEQSERLIPPIIEKAITIQDCLKKHNNFM
LYANEHEKEENSILRISSLLDNNIAIIIGPEGGFTNDELELLASYKNTKSVSLGSNIL
RAETAVITAIVQVKLLGRNCEEQSDVVIQKNNKKML"
misc_feature 224337..225029
/locus_tag="A1C_01170"
/note="16S ribosomal RNA methyltransferase RsmE;
Provisional; Region: PRK11713"
/db_xref="CDD:183286"
misc_feature 224379..225011
/locus_tag="A1C_01170"
/note="RNA methyltransferase; Region: Methyltrans_RNA;
pfam04452"
/db_xref="CDD:203020"
gene complement(225716..225811)
/locus_tag="A1C_01180"
/db_xref="GeneID:5645617"
CDS complement(225716..225811)
/locus_tag="A1C_01180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493073.1"
/db_xref="GI:157825353"
/db_xref="GeneID:5645617"
/translation="MYINIGLITLIGLITKNSIMIVEFANQLREK"
misc_feature complement(225719..>225766)
/locus_tag="A1C_01180"
/note="The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region:
2A0602; TIGR00915"
/db_xref="CDD:162104"
gene 227750..227869
/locus_tag="A1C_01205"
/db_xref="GeneID:5645618"
CDS 227750..227869
/locus_tag="A1C_01205"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493074.1"
/db_xref="GI:157825354"
/db_xref="GeneID:5645618"
/translation="MIPPFCTFSIILPNSSGVDKEPSSVTIKLLLFVLIIPIG"
gene complement(228276..228395)
/locus_tag="A1C_01215"
/db_xref="GeneID:5645619"
CDS complement(228276..228395)
/locus_tag="A1C_01215"
/codon_start=1
/transl_table=11
/product="hydrophobe/amphiphile efflux-1 HAE1 family
protein"
/protein_id="YP_001493075.1"
/db_xref="GI:157825355"
/db_xref="GeneID:5645619"
/translation="MIFQCPLYNVEAHYACAGASYMKKEITTRIEKALKTVKT"
misc_feature complement(<228282..228380)
/locus_tag="A1C_01215"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:223911"
gene 228997..229329
/locus_tag="A1C_01220"
/db_xref="GeneID:5645620"
CDS 228997..229329
/locus_tag="A1C_01220"
/note="COG0776 Bacterial nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU"
/protein_id="YP_001493076.1"
/db_xref="GI:157825356"
/db_xref="GeneID:5645620"
/translation="MSTHNKSEPKKMNKTEFIAFMTDHAHNHKHASHKTLTKADAEKA
LNLVLDSVISAIRSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAG
RKMKEACN"
misc_feature 229033..229320
/locus_tag="A1C_01220"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(229033..229038,229045..229047,229054..229056,
229066..229068,229135..229137,229144..229149,
229156..229161,229171..229185,229192..229197,
229210..229212,229276..229281,229291..229293,
229297..229299,229318..229320)
/locus_tag="A1C_01220"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(229033..229041,229132..229134,229177..229179,
229183..229185,229189..229194,229201..229203,
229213..229215,229219..229224,229228..229230,
229237..229248,229276..229278,229288..229290,
229294..229296,229303..229305)
/locus_tag="A1C_01220"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 229385..230263
/locus_tag="A1C_01225"
/db_xref="GeneID:5645621"
CDS 229385..230263
/locus_tag="A1C_01225"
/EC_number="2.7.7.7"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the delta' subunit seems to
interact with the gamma subunit to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_001493077.1"
/db_xref="GI:157825357"
/db_xref="GeneID:5645621"
/translation="MILEKPAHATMLCKSRNDIEQFLTILQPLIIERLKFNLKHNKLY
HSWLIEAENIEQALKDLEDFVYSTLFKNSIPLENNPDYHFISRETSYTSNAKNISIEQ
IRKLQDFLSKTSAISGYKVVVIYAADLMNLNAANSCLKILEDAPKNSYIFLITSRAAS
IISTIRSRCFKVNIRSTLPHARNDLYLQFIQPIADNETLDFIHRFTNKDRELWLDFID
NLLLLMNRMLKKAANVNIELLDLENKIFNKLSNKHPSYLLQKFTGIKKLIYNTIDYDL
DLKTSYILVVNEFTSN"
misc_feature 229472..230260
/locus_tag="A1C_01225"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK06581"
/db_xref="CDD:180629"
gene 230546..231895
/locus_tag="A1C_01230"
/db_xref="GeneID:5644999"
CDS 230546..231895
/locus_tag="A1C_01230"
/note="COG0541 Signal recognition particle GTPase"
/codon_start=1
/transl_table=11
/product="Signal recognition particle protein"
/protein_id="YP_001493078.1"
/db_xref="GI:157825358"
/db_xref="GeneID:5644999"
/translation="MFKTLTQNLTKIFDKLASSGILTEAQIDNAMRDIRVALLESDVA
LPVIKDFIAEVKKNALGHEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPP
INFLMVGLQGSGKTTASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINS
LPIVQGEQPLDIVTRAIAEAKISAYDVVIYDTAGRTQIDQEMMEEALAIKNIVEPTET
LLVIDSMTGQDAVVTASNFNKKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSS
GEKLTDLEEFNAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDY
LQQMRSIKKMGGFGSILSMLPGSGKIMDQIDQSKLNSKIIEHQEAMILSMTLKERKNP
DIINASRRKRIAAGAGTTVQKVNILLKQYKQISEMMKKASKMNPKNLLRSGIGKLFS"
misc_feature 230546..231850
/locus_tag="A1C_01230"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:182793"
misc_feature 230570..230803
/locus_tag="A1C_01230"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:198031"
misc_feature 230858..231370
/locus_tag="A1C_01230"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature 230870..230893
/locus_tag="A1C_01230"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature order(230960..230962,231125..231127,231290..231292,
231299..231304)
/locus_tag="A1C_01230"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
misc_feature 231530..231829
/locus_tag="A1C_01230"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene 235282..236463
/locus_tag="A1C_01265"
/db_xref="GeneID:5645000"
CDS 235282..236463
/locus_tag="A1C_01265"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_001493079.1"
/db_xref="GI:157825359"
/db_xref="GeneID:5645000"
/translation="MPKFFKNMKVMADDLSIYIHWPFCLSKCPYCDFNSHVASTIDHN
QWIKSYETEIEYFKNIIQNKYIKSIFFGGGTPSLMNPVLVELIINKINNLAILDNRTE
ITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDALQAIKTIEQAN
GIFPRVSFDLIYARSGQKLKDWQEELKQAMQLANGHISLYQLTIEKGTPFYKLFNEGN
LIVPHSDAAAEMYEWTNHYLASKKYFRYEISNYALANQKCLHNLTYWHYNSCLGIGPG
AHSRIIEPSGSVAAIMMWHKPEKWLDSVKTKNVGIQTNAKLTHQEIIEEILMMGLRLS
KGINISTLEQKINAKLMDILDMNNLKHYQALDLIKLDKNIYLTDKGLMLHSYIVPRLI
I"
misc_feature 235291..236460
/locus_tag="A1C_01265"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK06582"
/db_xref="CDD:180630"
misc_feature 235351..235929
/locus_tag="A1C_01265"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(235351..235353,235357..235359,235363..235365,
235369..235377,235495..235497,235501..235506,
235597..235605,235672..235674,235792..235794,
235882..235887)
/locus_tag="A1C_01265"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 236230..236427
/locus_tag="A1C_01265"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(236630..236983)
/locus_tag="A1C_01270"
/db_xref="GeneID:5645001"
CDS complement(236630..236983)
/locus_tag="A1C_01270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493080.1"
/db_xref="GI:157825360"
/db_xref="GeneID:5645001"
/translation="MSYQDILIGCSNEFTVTRADSFSCKILSNNIPLLVEYATGYYSR
ITIDAIPETQRAAGFLNKIREIVDQESMQNYIYVTSGNIVVLSNKTVVHKRDSYSHKW
DGKDHYFIRIYSVKI"
misc_feature complement(236663..>236890)
/locus_tag="A1C_01270"
/note="Clavaminic acid synthetase (CAS) -like; CAS is a
trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
carrying out three reactions in the biosynthesis of
clavulanic acid, an inhibitor of class A serine
beta-lactamases. In general, Fe(II)-2OG oxygenases...;
Region: CAS_like; cl00184"
/db_xref="CDD:206884"
gene complement(237617..237829)
/locus_tag="A1C_01275"
/db_xref="GeneID:5645002"
CDS complement(237617..237829)
/locus_tag="A1C_01275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493081.1"
/db_xref="GI:157825361"
/db_xref="GeneID:5645002"
/translation="MIGILEYFHNNILKKWDYFIIEDTNSDHNNACYDVWRKTLDEKT
CIAKLENLNNKIIRLISWLKEKKIYI"
misc_feature complement(237620..>237826)
/locus_tag="A1C_01275"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(238225..239424)
/locus_tag="A1C_01280"
/db_xref="GeneID:5645003"
CDS complement(238225..239424)
/locus_tag="A1C_01280"
/note="COG1301 Na+/H+-dicarboxylate symporters"
/codon_start=1
/transl_table=11
/product="proton/sodium-glutamate symport protein"
/protein_id="YP_001493082.1"
/db_xref="GI:157825362"
/db_xref="GeneID:5645003"
/translation="MKLWQKVTLGLSLGIIFGIYLPQYVSYIKPIGDIFLRLIKMIIT
PLIFFSLVSGITSMNDTSALGRVGMKAVAAFLGTTFFATVFGLTVALVLKPGVGIHID
FTYSGMTNRTAFNIVDFFVNIVPENAVGAFANGDVLQVVFFAIFVGITLNKMKSIGGP
VTDLIHVMSKLILKMISFVIQLSPYGAFALTGWIVGMQGIEVMISLSKLVVAVVVAMT
FQYLVFGLLIYVFCRVSPIPFYKKSFEYQILAFSTSSSKATLATTMQVCRAKLGISES
STSFVLPIGASINMDGFAINLSLTTIFFAQMMGVTLAPHDYLVIILTSTLGSIGGAGI
PGASLIMLPMVLSSVHLPIEGVAIIAGIDRILDMLRTTINITGDATITMIIDNSENTL
DKEVYLS"
misc_feature complement(238228..239424)
/locus_tag="A1C_01280"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature complement(238261..239418)
/locus_tag="A1C_01280"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:201189"
gene complement(239448..239762)
/locus_tag="A1C_01285"
/db_xref="GeneID:5645004"
CDS complement(239448..239762)
/locus_tag="A1C_01285"
/note="COG1324 Uncharacterized protein involved in
tolerance to divalent cations"
/codon_start=1
/transl_table=11
/product="divalent cation tolerance protein"
/protein_id="YP_001493083.1"
/db_xref="GI:157825363"
/db_xref="GeneID:5645004"
/translation="MQDCCLILTTTNDLQIAEKIASVLLELNLAACIQIDDVKSYFRW
DSRITLATEYRLVIKTKSANYNKIENKILEIHNYELPQIIKISIAYGFQKYLEWIDQN
SK"
misc_feature complement(239451..239759)
/locus_tag="A1C_01285"
/note="Uncharacterized protein involved in tolerance to
divalent cations [Inorganic ion transport and metabolism];
Region: CutA; COG1324"
/db_xref="CDD:31515"
gene complement(239765..240208)
/locus_tag="A1C_01290"
/db_xref="GeneID:5645005"
CDS complement(239765..240208)
/locus_tag="A1C_01290"
/note="COG0720 6-pyruvoyl-tetrahydropterin synthase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493084.1"
/db_xref="GI:157825364"
/db_xref="GeneID:5645005"
/translation="MTIEKKYIIMIKCTRRIEFDAGHRIIGHQNKCQFLHGHRYVLEI
TIAAHETDKLGMIVDFGLIKDLAKKWIDEHFDHSLILHQDDKEMGQQIANCTGQKIYY
MQNNPTAENIATHLKNEILPKLFVGQNFFVASLKLYETPNCFVEV"
misc_feature complement(239768..240175)
/locus_tag="A1C_01290"
/note="6-pyruvoyl tetrahydropterin synthase; Region: PTPS;
pfam01242"
/db_xref="CDD:201680"
misc_feature complement(order(239774..239776,239792..239794,
240095..240097,240101..240103))
/locus_tag="A1C_01290"
/note="active site"
/db_xref="CDD:29764"
gene complement(240318..241520)
/locus_tag="A1C_01295"
/db_xref="GeneID:5645020"
CDS complement(240318..241520)
/locus_tag="A1C_01295"
/EC_number="2.3.1.61"
/note="component of 2-oxoglutarate dehydrogenase complex;
catalyzes the transfer of succinyl coenzyme A to form
succinyl CoA as part of the conversion of 2-oxoglutarate
to succinyl-CoA"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide succinyltransferase"
/protein_id="YP_001493085.1"
/db_xref="GI:157825365"
/db_xref="GeneID:5645020"
/translation="MSVKIIVPLLGESVTEATIAKWYKKEGDSVKTDELLLEIETEKV
TLEVNAPCNGTIGKISKTDGANVAVGEEIGDINEGAAVNTAGTHTESAKAQEVTQPTS
EKPVDRPAMVNNILAPSVQKLVTENKLDPNNIKGTGKDARITKSDVLETINTKSAATS
TTVNKTNEERVQRVRMSRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRNQYKEE
FEKKHDVKLGFMSFFVKATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVV
PVVRDADQMGFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPIIN
PPQSGILGLHKTEERAVVIDGKIEIHPMMYIALSYDHRIIDGKEGVSFLVKIKQLIEN
PEKLLLNL"
misc_feature complement(240321..241520)
/locus_tag="A1C_01295"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:180214"
misc_feature complement(241293..241514)
/locus_tag="A1C_01295"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature complement(order(241374..241376,241386..241403,
241422..241424))
/locus_tag="A1C_01295"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature complement(241392..241394)
/locus_tag="A1C_01295"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature complement(241071..241178)
/locus_tag="A1C_01295"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature complement(240327..240962)
/locus_tag="A1C_01295"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene complement(241658..244444)
/gene="sucA"
/locus_tag="A1C_01300"
/db_xref="GeneID:5645021"
CDS complement(241658..244444)
/gene="sucA"
/locus_tag="A1C_01300"
/EC_number="1.2.4.2"
/note="SucA; E1 component of the oxoglutarate
dehydrogenase complex which catalyzes the formation of
succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
reaction of 2-oxoglutarate with dihydrolipoamide
succinyltransferase-lipoate to form dihydrolipoamide
succinyltransferase-succinyldihydrolipoate and carbon
dioxide"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1 component"
/protein_id="YP_001493086.1"
/db_xref="GI:157825366"
/db_xref="GeneID:5645021"
/translation="MEEYLKKTGYLFAGNAVFVEELYRQYLANSASVDQTWQEFFAGI
KDNSAVLNKSTAKIIIPYEIKKEPLHNNLSSAVLSSLKAKEMINAYRKHAHYLANLDP
LGLELRKTKNDLKLNIETFGLDSSQLEENINITDEFVGTWNCKLSALVTKLDKVYTGS
IGVEFEQIENVEEKSWLYSQIENDITFSAEDNKTILNDLVEVEGFEQYLHTKFPGAKR
FSVEGGDAAIVAMSKAIDLSMNQGIEEIVIGMAHRGRLNTLTKVVGKPYKAVIAGFIN
SSVFPDELNVSGDVKYHLGYSSDRVIEDKKIHLSLAYNPSHLEAVNPIVAGKVRAKQD
ILLDTQRSKVKAILVHGDAAFCGQGVVAESLSMSQLTAYDIGGILHFVINNQLGFTAN
ATDTRASRYSTEFAKISAAPILHVNGDDIEAVLKATNIALEYRQKFSKDVVVEIICYR
KYGHNEGDEPMYTQGKMYNIIKSKPTPGNIYANELVKRGIIDNNYYAKLKEEFKTRLD
KEYEQAQSYKPEVHFLGGLWQGISRTSTQAAITGVEKKTLQDLGTKLCEIPKDFVVNP
KLVKLFEARKANLIADQPIDWATAEQLAFASLLASGTNIRLTGQDCGRGTFSHRHSVL
HNQSDDTTYIPLNNLSKEQAKYEVADSNLSEYAVLGFEYGYSLANPKNLVLWEAQFGD
FANGAQIIFDQFISSGETKWLRMSGLVVLLPHAFEGQGPEHSSARLERLLQLAAEDNM
YVTYPTTPASIFHLLRRQILGDTRKPLIVMSPKSLLRHKYAVSKLDELGDNTAFLPVL
DEVTKIDTNNITKVILCSGKVYYDLFEMRGNNSNIVIVRLEQLYPFEKKLVASLLKKY
NRTQEFVWCQEEPKNMGAWRYIASYLNDALKEAGINNEFKYVGREESASPAVGSLQVH
NKQQEKLLREALGM"
misc_feature complement(241664..244444)
/gene="sucA"
/locus_tag="A1C_01300"
/note="2-oxoglutarate dehydrogenase E1 component;
Reviewed; Region: sucA; PRK09404"
/db_xref="CDD:181824"
misc_feature complement(243041..243832)
/gene="sucA"
/locus_tag="A1C_01300"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:48179"
misc_feature complement(order(243284..243286,243290..243292,
243383..243394,243491..243493))
/gene="sucA"
/locus_tag="A1C_01300"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48179"
misc_feature complement(242108..242698)
/gene="sucA"
/locus_tag="A1C_01300"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:202390"
gene complement(244580..246067)
/locus_tag="A1C_01305"
/db_xref="GeneID:5645022"
CDS complement(244580..246067)
/locus_tag="A1C_01305"
/note="COG2317 Zn-dependent carboxypeptidase"
/codon_start=1
/transl_table=11
/product="thermostable carboxypeptidase"
/protein_id="YP_001493087.1"
/db_xref="GI:157825367"
/db_xref="GeneID:5645022"
/translation="MNNYTKLENEFATISHFNNILSILYWDVAVNMPIGSGESRTNEI
VTLTSIVHSMLKSPILKELLSKAKEESTNLDEWQNVNIREIERKITDANCIDEQLQKQ
LVAATTKAELVWREARKNNDYNLFKPHLQKVLDYMQEVAKVRADVFNCELYDSLIDMF
DPSRKSSEIKQIFSVLKKELPQLINKVLEKQKNAKELVKNIELAPEMQKRIGKRMMAI
MQFDLKKGRLDESTHPFCGGTPNDIRLTTRYDKDNFISGLMGIIHETGHALYEQNLPE
MYKGQPVGLAKGIAFHESQSLFMEMQVGRSREFTAFLAKLLRDDFALKSEEYSAENLY
RKITRVKPDVIRVDADELTYPMHVILRFEIEEMLINGDLNLDELPSFWDSKMQEYLGV
KPVNFSNGCLQDIHWSHGNFGYFPAYTNGAIIASMVMKKVKERHSNIKDNILKGDFSN
INNYLNKNFRNLGSLKNSADLLKAASGEEKINPEVYIRYLEEKYL"
misc_feature complement(244583..246067)
/locus_tag="A1C_01305"
/note="Zn-dependent carboxypeptidase [Amino acid transport
and metabolism]; Region: COG2317"
/db_xref="CDD:32471"
misc_feature complement(244583..246037)
/locus_tag="A1C_01305"
/note="Peptidase family M32 includes thermostable
carboxypeptidases TaqCP and PfuCP; Region: M32_Taq;
cd06460"
/db_xref="CDD:188998"
misc_feature complement(order(244814..244816,244823..244825,
244850..244852,245189..245191,245267..245269,
245276..245281))
/locus_tag="A1C_01305"
/note="active site"
/db_xref="CDD:188998"
misc_feature complement(order(245189..245191,245267..245269,
245279..245281))
/locus_tag="A1C_01305"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188998"
gene complement(246246..247886)
/locus_tag="A1C_01310"
/db_xref="GeneID:5645023"
CDS complement(246246..247886)
/locus_tag="A1C_01310"
/note="COG0497 ATPase involved in DNA repair"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecN"
/protein_id="YP_001493088.1"
/db_xref="GI:157825368"
/db_xref="GeneID:5645023"
/translation="MFHSLSVKHFILIDELEIEFNKGLCVITGETGAGKSILLDAILF
CLGYKTSNNIIKRGKDYAVVNIIFSLNEEIKNFLIQNLIEPEELLLVKCLQKAKGRKK
FFINNQVVNKAIMQQLATYLFELHGQNNNISLLEASTQRDILDSYGNFLDFRARLSKC
YQTWQNIKNEIAEITLKQNAIEQEIDYLSFATEELTKLNIQTGEEEKLTNLRKNLKNK
DKDLQLIKDILEQINNPEINTSINRAEKLLARQGNNEHFEAVATSLEEAYNNLEEARQ
ELSNLLDSFNYEEYNLEETEERLFLIKAISRKYNVPADELGVFLDKASEQLGILKNKI
ANSNELKAQEVLLQKQYYELASDLSAKRLIAAKRLEESLHQELKQLKMAKAIFEIKIE
AKKEPTASGNDDIVFKASTNPGTRAEAMNKIASGGELSRFMLALKTSLFDKMVKPAII
FDEIDVGISGEVADKVGERLKKLSSVTQVIVITHQPQIAGKADLHIKIEKTQLEKETK
VTVKTLNSAERQEELARMISGKTITEASLKAAKELLHL"
misc_feature complement(246249..247886)
/locus_tag="A1C_01310"
/note="ATPase involved in DNA repair [DNA replication,
recombination, and repair]; Region: RecN; COG0497"
/db_xref="CDD:30843"
misc_feature complement(<247449..247877)
/locus_tag="A1C_01310"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature complement(247779..247802)
/locus_tag="A1C_01310"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73000"
misc_feature complement(order(247476..247478,247776..247784,
247788..247793))
/locus_tag="A1C_01310"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73000"
misc_feature complement(247476..247487)
/locus_tag="A1C_01310"
/note="Q-loop/lid; other site"
/db_xref="CDD:73000"
misc_feature complement(246300..>246689)
/locus_tag="A1C_01310"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature complement(246588..246617)
/locus_tag="A1C_01310"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73000"
misc_feature complement(246528..246545)
/locus_tag="A1C_01310"
/note="Walker B; other site"
/db_xref="CDD:73000"
misc_feature complement(246510..246521)
/locus_tag="A1C_01310"
/note="D-loop; other site"
/db_xref="CDD:73000"
misc_feature complement(246429..246449)
/locus_tag="A1C_01310"
/note="H-loop/switch region; other site"
/db_xref="CDD:73000"
gene complement(248071..248814)
/locus_tag="A1C_01315"
/db_xref="GeneID:5645024"
CDS complement(248071..248814)
/locus_tag="A1C_01315"
/note="COG4105 DNA uptake lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493089.1"
/db_xref="GI:157825369"
/db_xref="GeneID:5645024"
/translation="MKLTKLLSTLLVIGLVFSGCKSKKTSDDIVVPIPTLYNEGVTLL
AKQKYKKAAEEFGRVFYQHPGNAMTPQAELMQAYSLFLAAQYEEAVDVLEMFINLHPA
NVDIAYAYYLKALSYYMLVSDVNHDQSRTSLAKDSFEDVIARFPNTKYAIDSSLKIDL
VNDHLAGKEMMVGRFYLKKQNPMAAINRFEEVIDNYQTTSHSVEALYRLVEIYMMLGL
PDEAQKYASVLGYNYPDSPWYSYAYKLVK"
misc_feature complement(248074..248802)
/locus_tag="A1C_01315"
/note="DNA uptake lipoprotein [General function prediction
only]; Region: ComL; COG4105"
/db_xref="CDD:33862"
misc_feature complement(248107..248205)
/locus_tag="A1C_01315"
/note="Tetratricopeptide repeat; Region: TPR_6; pfam13174"
/db_xref="CDD:205355"
gene complement(249082..249276)
/locus_tag="A1C_01320"
/db_xref="GeneID:5645025"
CDS complement(249082..249276)
/locus_tag="A1C_01320"
/note="COG4572 Putative cation transport regulator"
/codon_start=1
/transl_table=11
/product="cation transport regulator ChaB"
/protein_id="YP_001493090.1"
/db_xref="GI:157825370"
/db_xref="GeneID:5645025"
/translation="MPYNNNNDLPNSVKNHLPSHAKDIYREAFNHAFAQYKDADKKRG
NGSKEAVAHKLAWSTVEKIS"
misc_feature complement(<249094..249276)
/locus_tag="A1C_01320"
/note="ChaB; Region: ChaB; cl01887"
/db_xref="CDD:186488"
gene complement(249502..250617)
/locus_tag="A1C_01325"
/db_xref="GeneID:5645026"
CDS complement(249502..250617)
/locus_tag="A1C_01325"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_001493091.1"
/db_xref="GI:157825371"
/db_xref="GeneID:5645026"
/translation="MSQDYYKILGVSKTASQADLKKAYLKLAKQYHPDTTDDKDAEKK
FKEINRAYDVLKDEQKRAAYDRFGHDTFQNQQSRGGGGSHAGFHHDINDIFGDFFSDF
MGGGRRKPTSSKARGSDLKYDLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET
VTTCDACGGVGATRIQQGFFTIEQACHKCKGNGQIIKNPCKKCHGMGRCHKQRNLSVN
IPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAITPHDIYKVDGANLHCKLPISFVN
AALGGEIEVPVIEGRKVNLTIPAGTQNGDQLRLRSKGMPKMRSTIRGDMITHIHIEVP
KNLSKRQCELLEEFKKESISEKENDGSFFNKMKSLWS"
misc_feature complement(249505..250617)
/locus_tag="A1C_01325"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14300"
/db_xref="CDD:172788"
misc_feature complement(250447..250608)
/locus_tag="A1C_01325"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(250468..250473,250480..250485,
250492..250494,250516..250524))
/locus_tag="A1C_01325"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(<250183..250266)
/locus_tag="A1C_01325"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature complement(order(250192..250209,250252..250254))
/locus_tag="A1C_01325"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature complement(249997..250179)
/locus_tag="A1C_01325"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature complement(order(250009..250011,250018..250020,
250051..250053,250060..250062,250117..250119,
250126..250128,250168..250170,250177..250179))
/locus_tag="A1C_01325"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature complement(249607..>249987)
/locus_tag="A1C_01325"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature complement(order(249607..249621,249709..249720,
249781..249786,249793..249798))
/locus_tag="A1C_01325"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene complement(250806..252689)
/gene="dnaK"
/locus_tag="A1C_01330"
/db_xref="GeneID:5644876"
CDS complement(250806..252689)
/gene="dnaK"
/locus_tag="A1C_01330"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_001493092.1"
/db_xref="GI:157825372"
/db_xref="GeneID:5644876"
/translation="MGKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFAN
GEKLVGQSAKRQAVTNPSNTIYAVKRLIGRNFTDPMVKKDQDIVPYNIVKADNGDAWV
EADSNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIA
GLEVLRIINEPTAAALAYGFDKAASKTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGD
TFLGGEDFDTRILNHLIDVFKKESGIDLRNDPLALQRLKEAAEKAKKELSSAVTTDIN
LPYITADSTGPKHLNIKFTRAEFEKLVDDLIEKTVEPCITALKDAGLKASDIQEVVLV
GGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLS
LGIETLGGVFTRLIDRNTTIPTKKSQVFSTADDNQHAVTIRVFQGEREMAASNKLLGQ
FNLEGIPPAPRGVPQIEVTFDIDVNGIVHVSAKDKASGKEQKVTIQASGGLSDAEIEQ
MVKDAEQNAYEDKKRKELIEAKNAADSLVYSTEKSLTEYGDKLSSEDKGAAEEALSAL
KAVLESEDAALIKEKTERLTAASMKIGEAMYKAQSENQPAGENTANDDKVVDADFQDV
AKK"
misc_feature complement(250809..252689)
/gene="dnaK"
/locus_tag="A1C_01330"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature complement(251562..252689)
/gene="dnaK"
/locus_tag="A1C_01330"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(order(251685..251687,252105..252116,
252180..252182,252645..252647,252651..252653,
252657..252668))
/gene="dnaK"
/locus_tag="A1C_01330"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 252930..254423
/locus_tag="A1C_01335"
/db_xref="GeneID:5644877"
CDS 252930..254423
/locus_tag="A1C_01335"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="heat shock protease"
/protein_id="YP_001493093.1"
/db_xref="GI:157825373"
/db_xref="GeneID:5644877"
/translation="MILQEVKMKKLSILLKLVCIINLVFINNIVLASFEASSAIFEKA
KKAIVTIDTRIAVSAYDDTSSWTGTGFINDKNNGYIITNTHVVGGASIGTYFVTFYNG
EQAEAKLIYYDIWQDYAVLKVESKDIPASATQISFSNEISTLNQKVFVVGNMEAKGFS
FHTGYLSDLYNIEGLMPQCTYVINLNSTGGASGSPVLNDKIEAIGVLYGGGKTHSLAL
HGDYVARTLESLKNNKQPSRKHIGIISELYSLNKAVRHHNFPKEEMDKYINKFPDSRN
RVISVKAVLAGSPAEKSLKAGDIIWAVNDKELGGNLALFDREMDNFKGIAIKLTIFRD
GKKLEQAVDLYDVNNNKIAKMINFGGAVFFEADDYFSNKSGIPLKALSIASVQSGSSF
SSIPTFFTKDYKNVYRLQIFEMKDFALSNLDDLVKFLPAITKENFITVRFKNYQPYYA
NFGYNEIISSHDDMIADVTLDSIDTKPYILKYNTISHDWDMENIQLQ"
misc_feature 253041..253967
/locus_tag="A1C_01335"
/note="Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones]; Region: DegQ; COG0265"
/db_xref="CDD:30614"
misc_feature 253131..253547
/locus_tag="A1C_01335"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature <253770..253955
/locus_tag="A1C_01335"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene 254761..255252
/locus_tag="A1C_01340"
/db_xref="GeneID:5644878"
CDS 254761..255252
/locus_tag="A1C_01340"
/codon_start=1
/transl_table=11
/product="ankyrin repeat-containing protein"
/protein_id="YP_001493094.1"
/db_xref="GI:157825374"
/db_xref="GeneID:5644878"
/translation="MRKQTVPTLYTSDVSQYKTPRLNALDSEREMKPASVKTDIEALE
VLFKDKTKSGIKAFNSALKVYLDNNSNALLHEAVEQGKKDLVIEILKVNRDSIESTTP
QGLSVLHSVIAGVNNKYVIEILLQVKPTLVTPKDASGLTPSFYNTNQEIIAIYYNIMN
EML"
misc_feature <254959..255186
/locus_tag="A1C_01340"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cl02529"
/db_xref="CDD:207631"
gene complement(255508..255852)
/locus_tag="A1C_01345"
/db_xref="GeneID:5644879"
CDS complement(255508..255852)
/locus_tag="A1C_01345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493095.1"
/db_xref="GI:157825375"
/db_xref="GeneID:5644879"
/translation="MSLDKLVLGIAIEVKTAWTKIKSYHLFFPKKAQISLIKYNSTEN
IKALKADTDEAKIVKITKEDCEKSFELYEEKLIILAQKLSSQTSISYDDYDTITKYYV
GPLGQEIPVTEL"
gene 256028..256501
/locus_tag="A1C_01350"
/db_xref="GeneID:5644880"
CDS 256028..256501
/locus_tag="A1C_01350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493096.1"
/db_xref="GI:157825376"
/db_xref="GeneID:5644880"
/translation="MRSLFVVIIFFLMSSCNLKPVYSEKYSRNNDLEAIKVEPIRTIE
GAEFYHRLTSILPQKAKAKYLLKAELIATTMPATIEKNTNVLMEYINKLVRYKLIDIE
SQKVLIAEKFYQNTSYNALFTPYATNVEGDETGIDLAYQAAEEIRSRLILYFTRK"
gene 256509..257489
/gene="holA"
/locus_tag="A1C_01355"
/db_xref="GeneID:5644881"
CDS 256509..257489
/gene="holA"
/locus_tag="A1C_01355"
/note="required for the assembly and function of the DNAX
complex which are required for the assembly of the beta
subunit onto primed DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_001493097.1"
/db_xref="GI:157825377"
/db_xref="GeneID:5644881"
/translation="MKFYFSQIGRLFALIKAGKIRALLLYGPDKGYIEKICKHLVKSL
NMLQTCIEYADLNISSVEILLNSPNFFGQKELIKIRSIGNSLDNNLKTILSSDYINFP
VFIGEEITASGSIRKFFETEEYLAAVACYHDDEAKIERIILDKVEKTNKVISKEAITY
LKAHLKGDHDLICSEINKLIYFVHDAREITLNDVLKVISSEITANGSDLAMYFSKKDY
SNFLQELEILKKQNINEVLIIRALIRHYLNLYIVLLKVKNGVRLELAIKSLSPPIFYQ
YINDFTKIATSLSLTECLETLKLLQQAEVDYKLNPAGFDLLQKVIDVIPA"
misc_feature 256509..257486
/gene="holA"
/locus_tag="A1C_01355"
/note="DNA polymerase III subunit delta; Reviewed; Region:
holA; PRK06585"
/db_xref="CDD:180631"
gene 257689..258228
/locus_tag="A1C_01360"
/db_xref="GeneID:5644882"
CDS 257689..258228
/locus_tag="A1C_01360"
/note="COG2941 Ubiquinone biosynthesis protein COQ7"
/codon_start=1
/transl_table=11
/product="ubiquinone biosynthesis protein Coq7"
/protein_id="YP_001493098.1"
/db_xref="GI:157825378"
/db_xref="GeneID:5644882"
/translation="MPKPDFSDPDKQIHEIIRVNHAGEYGAKRICQGQLKYITSQNDH
TLIKEMLDHEEVHLNYFEKKLLEKEVRPTFLLFFWHHCGFLLGALSSLIGIKTAMLVT
ESVEEVIEKHYEQQINYLENKNVEQELLNNIIKFRLDEIKHKNIAIMNDSTEAIFAEI
TSKIVKIICHISIILSQKI"
misc_feature 257725..258168
/locus_tag="A1C_01360"
/note="Demethoxyubiquinone hydroxylase, ferritin-like
diiron-binding domain; Region: DMQH; cd01042"
/db_xref="CDD:153101"
misc_feature order(257758..257760,257848..257850,257857..257859,
258004..258006,258106..258108,258115..258117)
/locus_tag="A1C_01360"
/note="diiron binding motif [ion binding]; other site"
/db_xref="CDD:153101"
gene complement(258256..258414)
/locus_tag="A1C_01365"
/db_xref="GeneID:5644766"
CDS complement(258256..258414)
/locus_tag="A1C_01365"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493099.1"
/db_xref="GI:157825379"
/db_xref="GeneID:5644766"
/translation="MFNKNKDLLILKNTNAKNKEKFRKKFLFSSAFLIILLMFLYALL
KILEVKYF"
gene 258912..259748
/locus_tag="A1C_01370"
/db_xref="GeneID:5644767"
CDS 258912..259748
/locus_tag="A1C_01370"
/note="COG1845 Heme/copper-type cytochrome/quinol oxidase,
subunit 3"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit III"
/protein_id="YP_001493100.1"
/db_xref="GI:157825380"
/db_xref="GeneID:5644767"
/translation="MNPNSHPMTKSHLFHIVDPSPWPVLTSFALLLLVIGGVSFMHGY
KFDIYILSAGVISLCYCLYSWWRDVVKEGIIEHQHTSPVRKGLQIGMALFILTEIVFF
GVFFASFFKSSLSPVGILDGVWVVKQGIWPPPTIKTFDPFDIPFINTLILLLSGTTVT
WAHYALEEKNQKDCVTALALTILLGIFFTTMQAYEYYHAAFKFTDGIYASNFYLATGF
HGVHVIIGTIFLIVCYFRAKRGDFTTEGNGHLGFEFTAWYWHFVDVVWLFLFTFVYIF
GS"
misc_feature 258981..259739
/locus_tag="A1C_01370"
/note="Cytochrome c oxidase subunit III. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_III; cd01665"
/db_xref="CDD:29485"
misc_feature order(259101..259103,259110..259115,259122..259124,
259131..259139)
/locus_tag="A1C_01370"
/note="Subunit III/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(259104..259109,259116..259121,259128..259130,
259146..259148,259179..259184,259191..259193,
259596..259598,259617..259619,259659..259664)
/locus_tag="A1C_01370"
/note="Phospholipid binding site [chemical binding]; other
site"
/db_xref="CDD:29485"
misc_feature order(259155..259157,259164..259169,259200..259202,
259209..259211,259221..259226,259242..259244,
259527..259532,259539..259541,259551..259553)
/locus_tag="A1C_01370"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature 259311..259313
/locus_tag="A1C_01370"
/note="Subunit III/VIb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(259335..259343,259392..259394,259470..259472,
259500..259508,259521..259529)
/locus_tag="A1C_01370"
/note="Subunit III/VIa interface; other site"
/db_xref="CDD:29485"
misc_feature 259428..259430
/locus_tag="A1C_01370"
/note="Subunit III/Vb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
gene 259904..260263
/locus_tag="A1C_01375"
/db_xref="GeneID:5644768"
CDS 259904..260263
/locus_tag="A1C_01375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493101.1"
/db_xref="GI:157825381"
/db_xref="GeneID:5644768"
/translation="MNFPIRKLNEELVDYNLSLRILFTILSVAIIMVAFDSLGSSVGD
PVGDALCKLIKVFRGNTAKGIAVVGIIVLGIQTLRGKLQWEVALVVVTAIIILFKAPD
IVNMVSSDSNSSNCGVS"
misc_feature 259931..260212
/locus_tag="A1C_01375"
/note="Type IV secretory pathway, VirB2 components
(pilins) [Intracellular trafficking and secretion];
Region: VirB2; COG3838"
/db_xref="CDD:33630"
gene complement(260562..261182)
/locus_tag="A1C_01380"
/db_xref="GeneID:5644769"
CDS complement(260562..261182)
/locus_tag="A1C_01380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493102.1"
/db_xref="GI:157825382"
/db_xref="GeneID:5644769"
/translation="MYITCPNCQTRFIVTSNQIGINGRRVKCSKCSHSWYQKLDNNTA
TLNDFKDKVNTETIKNHYNANVPVILPYIPNKKKYNIFPILWTSFIIFGLVILLIDSF
EFLGNYDQLKIEEINLGKSRYIGGMKIFYKVSNQSDYLISDPIIKVRVMDSNHQALDE
YASITKLQTNIPAKQAIYLEMNIEGIPVTAKYIDIAIGNRLGLLFK"
misc_feature complement(261069..261182)
/locus_tag="A1C_01380"
/note="MJ0042 family finger-like domain; Region:
MJ0042_CXXC; TIGR02098"
/db_xref="CDD:131153"
gene 261266..262090
/gene="dapD"
/locus_tag="A1C_01385"
/db_xref="GeneID:5644770"
CDS 261266..262090
/gene="dapD"
/locus_tag="A1C_01385"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_001493103.1"
/db_xref="GI:157825383"
/db_xref="GeneID:5644770"
/translation="MSSLIKEIEEAWQIKGQLLQDSSKLIMLKKTLNDVIASLNQGAI
RVCEKKENSWEVNEWVKKAILLYFITTESQLYNNNYNSWYDKVAPKFSVDTDENIFKE
AAIRKVPGAVVRTGTYIAKNVVIMPSFINIGAYIDEGTMIDTWATIGSCAQIGKHCHI
SGGTGIGGVLEPLQAKPVIIEDNCFIGARSEIAEGVIVEEGAVISMGVFIGSSTKIIY
RDTGEIIYGRIPAYSVVVPGVLPAKEAGKPGLYCAVIIKQVDKTTRSKVSINDLLR"
misc_feature 261266..262087
/gene="dapD"
/locus_tag="A1C_01385"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature 261578..261988
/gene="dapD"
/locus_tag="A1C_01385"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(261581..261586,261593..261598,261644..261646,
261650..261652,261698..261706,261752..261754,
261830..261832,261836..261838,261890..261892,
261971..261982,261986..261988)
/gene="dapD"
/locus_tag="A1C_01385"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(261581..261583,261605..261607,261641..261643,
261656..261658,261692..261694,261713..261715,
261740..261742,261746..261748,261767..261769,
261773..261778,261785..261787,261824..261832,
261845..261847,261878..261883)
/gene="dapD"
/locus_tag="A1C_01385"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(261581..261583,261605..261607,261641..261643,
261656..261658,261692..261694,261713..261715,
261773..261775)
/gene="dapD"
/locus_tag="A1C_01385"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(261746..261751,261767..261769,261785..261787,
261824..261832,261845..261847,261878..261883)
/gene="dapD"
/locus_tag="A1C_01385"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene complement(262627..262734)
/locus_tag="A1C_01390"
/db_xref="GeneID:5644771"
CDS complement(262627..262734)
/locus_tag="A1C_01390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493104.1"
/db_xref="GI:157825384"
/db_xref="GeneID:5644771"
/translation="MYDKISDMLFNLGREDSAIIFYRNNNKLDSILEVL"
gene complement(262758..263039)
/locus_tag="A1C_01395"
/db_xref="GeneID:5644772"
CDS complement(262758..263039)
/locus_tag="A1C_01395"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493105.1"
/db_xref="GI:157825385"
/db_xref="GeneID:5644772"
/translation="MLSTTCSQSNKCYNSLIKICDLFVQNNYLSSIKNIKPESNQPVQ
YYQEAIKCLSKYPDKTVVMQTITSCHSKIGDILSEESDYNGALANYNAA"
gene complement(263531..263791)
/locus_tag="A1C_01400"
/db_xref="GeneID:5645622"
CDS complement(263531..263791)
/locus_tag="A1C_01400"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493106.1"
/db_xref="GI:157825386"
/db_xref="GeneID:5645622"
/translation="MTDKLKFIIVAKEETVKSPNIFNRIIKDFKKFFHLEEYKKLRGN
FTYVITQHHENIILMLQNSIDINKDILASSNIKFFYKPTSQD"
gene complement(263824..263982)
/locus_tag="A1C_01405"
/db_xref="GeneID:5645623"
CDS complement(263824..263982)
/locus_tag="A1C_01405"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493107.1"
/db_xref="GI:157825387"
/db_xref="GeneID:5645623"
/translation="MKNLPLINYLILKQRRKLIINMNQLYISPKNLKLQKKYFGNTQT
EYQIQFKS"
gene complement(264225..266579)
/locus_tag="A1C_01410"
/db_xref="GeneID:5645624"
CDS complement(264225..266579)
/locus_tag="A1C_01410"
/note="COG4953 Membrane
carboxypeptidase/penicillin-binding protein PbpC"
/codon_start=1
/transl_table=11
/product="bifunctional penicillin-binding protein 1C"
/protein_id="YP_001493108.1"
/db_xref="GI:157825388"
/db_xref="GeneID:5645624"
/translation="MTIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGEL
MRISLSKDDKYRIFTPIREIPASFIEAVLLYEDRHFYKHCGINPISLAKAFYYTYLQN
NRKIGGSTITMQIARLRYGINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYG
SNIEGITASSYIYFNRDLKDLNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWL
TTHPQDIIYNKLISLPIKFNQNKNLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIE
KQVQLYINNLKKYGINNASVILIDFTTMEVLASVGSGDFFNNDICGQINGTKSHRSPG
SALKPFVYALSFDQSLIHPLTLLKDTPTYYDHYKPENFDSRFTGGLSVRESLIRSRNV
PVIFLASKLKNPNFYEFLQQAKISGLQKPEHYGLSIVLGTAEITLEELTTLYAMLANF
GTYKPLRKMLSTSLHGEAQRGRGTLEQNNTNSTRLPRSEQMLATTMISPEASYLTLDI
IKDTTRPITYNNTKHNLPIYWKTGTSSSFRDALSIGIFSKYVLAVWVGDFKGQTHGTF
TGNISAAPLFFNIIESIAEPNKDKDLILSKINKLNITKVKVCADTGDIDNDMCPLKAE
SLFIKGKSPIKQSGIYRKMLIDLKTGMPACHFIQGQTEYKTVNLWPADMISVYQKAGI
HILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKDSDNITFSAISDNKTNNIFWF
VDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKIYIKE"
misc_feature complement(264228..266579)
/locus_tag="A1C_01410"
/note="Membrane carboxypeptidase/penicillin-binding
protein PbpC [Cell envelope biogenesis, outer membrane];
Region: PbpC; COG4953"
/db_xref="CDD:34561"
misc_feature complement(265992..266426)
/locus_tag="A1C_01410"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(264837..265700)
/locus_tag="A1C_01410"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature complement(264240..264500)
/locus_tag="A1C_01410"
/note="Penicillin-Binding Protein C-terminus Family;
Region: BiPBP_C; pfam06832"
/db_xref="CDD:203528"
gene 267090..267401
/locus_tag="A1C_01415"
/db_xref="GeneID:5645625"
CDS 267090..267401
/locus_tag="A1C_01415"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca8"
/protein_id="YP_001493109.1"
/db_xref="GI:157825389"
/db_xref="GeneID:5645625"
/translation="MTKNINSKLTKLFLLSCANAAIMTAMPINEDITIADILTKNASY
TALTGQAQCEGIKNLVANVNFKTVLEPDRRVLQEIVIRDFDTHNTNLGDILLLEQKKM
P"
gene 267472..267561
/locus_tag="A1C_01420"
/db_xref="GeneID:5645626"
CDS 267472..267561
/locus_tag="A1C_01420"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493110.1"
/db_xref="GI:157825390"
/db_xref="GeneID:5645626"
/translation="MPAHEPAARNLEVGAWFNKPKTAIEENEI"
gene 267826..268143
/locus_tag="A1C_01425"
/db_xref="GeneID:5645627"
CDS 267826..268143
/locus_tag="A1C_01425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493111.1"
/db_xref="GI:157825391"
/db_xref="GeneID:5645627"
/translation="MKDQELNQGARAIVANEDLFANLLNDEEQKAIGLDWVFKNVHES
MQKLITKEKVKTATLLALEKIAPVIDRIEFINTKSEILVEGLLNNQGKDIVNKFNDLS
FSD"
gene 268272..268595
/locus_tag="A1C_01430"
/db_xref="GeneID:5645628"
CDS 268272..268595
/locus_tag="A1C_01430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493112.1"
/db_xref="GI:157825392"
/db_xref="GeneID:5645628"
/translation="MNFYNILAVTKANLMDSTTDLALTRISENEITDQIQKAFSKVLS
SEQDRNANRITTLYDKKVIWTLVSSINSKNLLKKFDELKNQNRIADLDGIKYAIDKLK
KSENN"
gene 268704..268790
/locus_tag="A1C_01435"
/db_xref="GeneID:5645737"
CDS 268704..268790
/locus_tag="A1C_01435"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493113.1"
/db_xref="GI:157825393"
/db_xref="GeneID:5645737"
/translation="MWIARAEAVVAHNNGRQTAAAEQMRLKA"
gene 268854..268961
/locus_tag="A1C_01440"
/db_xref="GeneID:5645738"
CDS 268854..268961
/locus_tag="A1C_01440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493114.1"
/db_xref="GI:157825394"
/db_xref="GeneID:5645738"
/translation="MVDNGNCDEETLGRITKEVARVLDHEYQGDKMHFL"
gene 269047..269262
/locus_tag="A1C_01445"
/db_xref="GeneID:5645739"
CDS 269047..269262
/locus_tag="A1C_01445"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca8"
/protein_id="YP_001493115.1"
/db_xref="GI:157825395"
/db_xref="GeneID:5645739"
/translation="MFSSAAGDEDERVSDHDILVASTIAIGTYKNNNYSVAILLSYNH
LMNGGITLTPNLGIRYGCFERRHLPRK"
misc_feature <269059..>269226
/locus_tag="A1C_01445"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl01155"
/db_xref="CDD:213103"
gene 269373..269534
/locus_tag="A1C_01450"
/db_xref="GeneID:5645740"
CDS 269373..269534
/locus_tag="A1C_01450"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca8"
/protein_id="YP_001493116.1"
/db_xref="GI:157825396"
/db_xref="GeneID:5645740"
/translation="MPALQASVEYYFNNKSKTLNAKVQLQDKEINETIALLKQPKVFY
LVWYCCVDT"
gene complement(269709..270155)
/locus_tag="A1C_01455"
/db_xref="GeneID:5645741"
CDS complement(269709..270155)
/locus_tag="A1C_01455"
/note="COG0589 Universal stress protein UspA and related
nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="universal stress protein UspA"
/protein_id="YP_001493117.1"
/db_xref="GI:157825397"
/db_xref="GeneID:5645741"
/translation="MSENTIFKNILIPIDLNDKKSIKGILSKALMLATHFQAKLHFMY
VIPEFGTKMFEDYLPQNWRTEKKAKYRTQIKELIKQYIPDEIETDYYIASGAVYDEII
KHSNEIKADLIIISAVRLQLKDYMLGPNASKIVRHSDISVLVVRDE"
misc_feature complement(269721..270131)
/locus_tag="A1C_01455"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(269763..269774,269799..269804,
269808..269813,270021..270023,270111..270119))
/locus_tag="A1C_01455"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene complement(270165..271106)
/locus_tag="A1C_01460"
/db_xref="GeneID:5645742"
CDS complement(270165..271106)
/locus_tag="A1C_01460"
/note="COG2358 TRAP-type uncharacterized transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493118.1"
/db_xref="GI:157825398"
/db_xref="GeneID:5645742"
/translation="MNNFRLATIISLFLICSNIYAAPKVIKIGTGSILKGYYAIGLDL
CKTITNDTKNNEHIKCEVIATNGSIENLKLLQQGKIDLALVQANIAVEAYEGIGYYHD
QEKMQNLRQVLNLHDEFFTVIVKDEDKIKVFADIDGKKITNGPAFASSNITYDAIRSL
YKFSKEPEELHINYEDSIDKFCNKEIDAIIMMVGHSNHLVNLIANKCEVDFVSVENDK
IAELIKQNRAFHKAILHKGLYPGITDDQTTVKVSAILVTRDEANRDILDKFIGAFHRN
VANFKLSNYLLNNLDLHYFADTKNFVLPKHASVRNKN"
misc_feature complement(270168..271106)
/locus_tag="A1C_01460"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:32505"
misc_feature complement(270264..271091)
/locus_tag="A1C_01460"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene complement(271111..272181)
/locus_tag="A1C_01465"
/db_xref="GeneID:5645743"
CDS complement(271111..272181)
/locus_tag="A1C_01465"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493119.1"
/db_xref="GI:157825399"
/db_xref="GeneID:5645743"
/translation="MIRKILLFVFLAFTTVWFSTAYTIKNNVVSLIKNSGSDNRKISY
NAIKFSGYPFNWKITITDPKVKFIDHVNSKEFTCKNIVLNIAFSTKRAALNFGPFIKE
VDNYGDKTFTYNIRSDDDINGIGKFNKPLYKISKDDNLKEILKSIQLNNKALSIFKDN
QKVFKINDLAFLIKKQHLASEESISLFLNMNYYSEKDILNFKNANLDIAASVKFAEDE
EDAAILQNFNIERFIFTCDNDYKVNLNGALQFFANKLPKGKLYFELENYNSIVDKLLP
NNIIFSKQIIKTIIAKAINQTSNEQLNTDQNDANSAYNNIEKAKFDIEFSDKGINIGS
INLLELKLGKHKEAQNTENNPN"
gene complement(272194..272532)
/locus_tag="A1C_01470"
/db_xref="GeneID:5644927"
CDS complement(272194..272532)
/locus_tag="A1C_01470"
/note="COG0633 Ferredoxin"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_001493120.1"
/db_xref="GI:157825400"
/db_xref="GeneID:5644927"
/translation="MSGKIKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEG
SLACATCHVILEDEFYNKLKKPTEAEEDMLDLAFGLTDTSRLGCQIILTEALDGIKVR
LPSATRNIKL"
misc_feature complement(272245..272514)
/locus_tag="A1C_01470"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(272269..272274,272380..272391,
272398..272400,272407..272409,272416..272421))
/locus_tag="A1C_01470"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(272269..272271,272380..272382,
272389..272391,272407..272409))
/locus_tag="A1C_01470"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(272594..274381)
/gene="hscA"
/locus_tag="A1C_01475"
/db_xref="GeneID:5644928"
CDS complement(272594..274381)
/gene="hscA"
/locus_tag="A1C_01475"
/note="involved in the maturation of iron-sulfur
cluster-containing proteins"
/codon_start=1
/transl_table=11
/product="chaperone protein HscA"
/protein_id="YP_001493121.1"
/db_xref="GI:157825401"
/db_xref="GeneID:5644928"
/translation="MQIIEIREPEQTDFKQKQQIAVGIDFGTTNSLIAIATDRKVKVI
KSIDDKEITPTTIDFTSNNFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDV
NSNELKLNFANRRIRICEIAAEVFIYLKNQAEEQLKTHITKAVITVPAHFNDAARGEV
MLAAKIAGFEVLRLIAEPTAAAYAYGLNNNQKGCYLVYDLGGGTFDVSILNIQEGIFQ
VIATSGDNMLGGDDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNNDNIS
INRQILEQLILPLVEYTINIAQECLAQAGNPNIDGVILVGGVTRIPLIKDELYKAFKV
DILSDIDPDKAVVWGAALQADNLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTP
IPIAVVKEFTTYADNQTGIQFHILQGEREMAVDCRSLARFELKGLPPMKAGNIRAEVT
FAIDADGILSVSAYEKISNTSHTIEVKPNHGIDNTEIDIMLENAYKNAQIDYTTRLLQ
EAIIEAEALISSIEGAMAELTTLLSESEISVINSLLDNIKAAAKARDRILINNSIKEF
KSKINKSMDTNLNIIINGVLKGKNINQIQ"
misc_feature complement(272597..274381)
/gene="hscA"
/locus_tag="A1C_01475"
/note="chaperone protein HscA; Provisional; Region: hscA;
PRK01433"
/db_xref="CDD:167230"
misc_feature complement(273317..274324)
/gene="hscA"
/locus_tag="A1C_01475"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(order(273434..273436,273776..273787,
273851..273853,274286..274288,274292..274294,
274298..274309))
/gene="hscA"
/locus_tag="A1C_01475"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(274372..274872)
/gene="hscB"
/locus_tag="A1C_01480"
/db_xref="GeneID:5644929"
CDS complement(274372..274872)
/gene="hscB"
/locus_tag="A1C_01480"
/note="J-type co-chaperone that regulates the ATPase and
peptide-binding activity of Hsc66 chaperone; may function
in biogenesis of iron-sulfur proteins"
/codon_start=1
/transl_table=11
/product="co-chaperone HscB"
/protein_id="YP_001493122.1"
/db_xref="GI:157825402"
/db_xref="GeneID:5644929"
/translation="MQNYFQLLGLPQDYDIDLKILEKQYFAMQVKYHPDKAKTLQEKE
HNLITAAELNNAYSTLKNALKRAEYMLLLQNINLNDEKTRSVLSPLELSIFWNEMEII
ENTTLFSDLEKIKDKYELMQKQEIDSLKQAFKEQNLSDATIKTSKLKYIGTLLHKLQK
KIKSCK"
misc_feature complement(274375..274872)
/gene="hscB"
/locus_tag="A1C_01480"
/note="co-chaperone HscB; Provisional; Region: hscB;
PRK01356"
/db_xref="CDD:167217"
misc_feature complement(274687..274866)
/gene="hscB"
/locus_tag="A1C_01480"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(274708..274713,274720..274725,
274741..274743,274768..274776))
/gene="hscB"
/locus_tag="A1C_01480"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature complement(274384..274587)
/gene="hscB"
/locus_tag="A1C_01480"
/note="HSCB C-terminal oligomerisation domain; Region:
HSCB_C; pfam07743"
/db_xref="CDD:203753"
gene 275014..275595
/gene="rnhB"
/locus_tag="A1C_01485"
/db_xref="GeneID:5644930"
CDS 275014..275595
/gene="rnhB"
/locus_tag="A1C_01485"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_001493123.1"
/db_xref="GI:157825403"
/db_xref="GeneID:5644930"
/translation="MEVDLLHFEKKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNANI
IHGIKDSKKLSKKKRALLYEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANL
NVKPEIVLVDGNMQFSDERFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQY
LWHKNSGYGTKEHLEAINKYGLSPYHRKSFKCC"
misc_feature 275065..275586
/gene="rnhB"
/locus_tag="A1C_01485"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(275074..275085,275272..275280,275287..275289,
275347..275349,275383..275385,275440..275442)
/gene="rnhB"
/locus_tag="A1C_01485"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(275074..275079,275347..275349,275398..275400)
/gene="rnhB"
/locus_tag="A1C_01485"
/note="active site"
/db_xref="CDD:187695"
gene complement(275759..277744)
/locus_tag="A1C_01490"
/db_xref="GeneID:5644931"
CDS complement(275759..277744)
/locus_tag="A1C_01490"
/note="The UvrABC repair system catalyzes the recognition
and processing of DNA lesions. The beta-hairpin of the
Uvr-B subunit is inserted between the strands, where it
probes for the presence of a lesion"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_001493124.1"
/db_xref="GI:157825404"
/db_xref="GeneID:5644931"
/translation="MNHFSLISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGK
TFTMANIIERTNRPTLIMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIA
RTDTFIEKDSSINEHIDLMRHSATRSLLERRDVIVVASVSCIYGLGSPDLYYQMTVNL
EPGKSYPRDKLLNDLINLQYKRNDMGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFSN
ELEYIHEFDPLTGEKLAKLDKAIVFGHSHFVMPQDTVNNAISGIEEELQKRLEFLKSQ
NKLLETQRLNQRTQYDLEMLTETGSCKGVENYSRFFTGRNAGEPPPTLFEYLPKDALL
FVDESHVSVPQIKAMYNSDRARKEVLVEHGFRLPSALDNRPLKFEEWEKFRPQTVFVS
ATPGPFELEETGGTVVELIIRPTGLLDPECIIKPATKQVEDLISEIQATVAKGLRVLV
TTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLERIEILQDLRQGTIDILVGINLLREG
LDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYADKMTKSIDKALSE
TLRRRQIQQEYNEKHGIIPKTINRAIHALATLERVDSKCDTKQAHTLFDNTAKLKANI
NKLNKEMLKAASNLEFEQAAKLRDQLKTLEAAARELS"
misc_feature complement(275762..277744)
/locus_tag="A1C_01490"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature complement(<277430..277651)
/locus_tag="A1C_01490"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(277610..277624)
/locus_tag="A1C_01490"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(276089..276484)
/locus_tag="A1C_01490"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(276233..276241,276314..276319,
276377..276388))
/locus_tag="A1C_01490"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(276116..276118,276125..276127,
276137..276139,276215..276217))
/locus_tag="A1C_01490"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(275966..276094)
/locus_tag="A1C_01490"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature complement(275780..>275857)
/locus_tag="A1C_01490"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 277815..278108
/locus_tag="A1C_01495"
/db_xref="GeneID:5644932"
CDS 277815..278108
/locus_tag="A1C_01495"
/note="COG0695 Glutaredoxin and related proteins"
/codon_start=1
/transl_table=11
/product="glutaredoxin"
/protein_id="YP_001493125.1"
/db_xref="GI:157825405"
/db_xref="GeneID:5644932"
/translation="MNKAILHTIIIYTLVSCPYCIKAKALLDEQNIAYEEIEVSNLTQ
AEKEKFIKKSGGKGTVPQIFIDNMHVGGCDDLFDLEKEGRLDKLLEGQPKKSI"
misc_feature 277836..278063
/locus_tag="A1C_01495"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(277854..277856,277863..277871,277980..277982,
277989..277994)
/locus_tag="A1C_01495"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(277863..277865,277872..277874)
/locus_tag="A1C_01495"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 280551..283247
/locus_tag="A1C_01525"
/db_xref="GeneID:5644933"
CDS 280551..283247
/locus_tag="A1C_01525"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_001493126.1"
/db_xref="GI:157825406"
/db_xref="GeneID:5644933"
/translation="MTDKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKP
VHRRIIYSMHEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLP
LVDGQGNFGSMDGDAAAAMRYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVL
PAMFPNLLVNGSGGIAVGMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDF
PTGSMILGISGIRSAYLTGRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEK
IAEMVKEKRIEGISDLRDESNKNGVRIFIELKKDVVAEVVLNQIYACTQLQTSFGVIM
LALKDGLPKVMNLKEVIAAFVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDE
IIRIIKAANDTNAAKQELMARSWEALKILPLVKLVDDKAMLNEQDKCSFTELQAKAIL
EMRLQRLTAMEKNKLEEELKNLATEITEYINILGSRTRLLEILKEELIKVKEEFATPR
LTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDE
DITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKGRPMVNILPLKENEHITN
IMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSSGKIAIRLDDDDKLIDVKPC
KEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSVISMTVLKGINSTK
EDRDAYFTVPWAKRLEIAKGEEFNLEELGVTLTADSILKMANSEEFILTVTENGFGKR
SSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKIDDELMLITNSGKLIRCKLESVR
ITGRNTSGVILFKLDDGEKVVSVSLIAETSESAEDSELEEDG"
misc_feature 280569..283196
/locus_tag="A1C_01525"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 280641..282014
/locus_tag="A1C_01525"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(280641..280724,280737..280886,280890..280946,
280950..281021,281028..281030)
/locus_tag="A1C_01525"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 280917..280919
/locus_tag="A1C_01525"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(281712..281720,281727..281738,281769..281774,
281889..281939)
/locus_tag="A1C_01525"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 282294..282431
/locus_tag="A1C_01525"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 282465..282599
/locus_tag="A1C_01525"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 282606..282752
/locus_tag="A1C_01525"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 282903..283049
/locus_tag="A1C_01525"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 283056..283196
/locus_tag="A1C_01525"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene complement(283783..284058)
/locus_tag="A1C_01530"
/db_xref="GeneID:5645573"
CDS complement(283783..284058)
/locus_tag="A1C_01530"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493127.1"
/db_xref="GI:157825407"
/db_xref="GeneID:5645573"
/translation="MTYESRIKLDPHTSNNIKKTIRVASLVSITTDLKSKPKIIKGRN
NPIIDLIDRLIEYNNLVTSKLISGLNNMIAMIIAIKISGILRNIKLT"
gene 284970..285086
/gene="def"
/locus_tag="A1C_01545"
/db_xref="GeneID:5645574"
CDS 284970..285086
/gene="def"
/locus_tag="A1C_01545"
/EC_number="3.5.1.88"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_001493128.1"
/db_xref="GI:157825408"
/db_xref="GeneID:5645574"
/translation="MQQIKLFVFLDIFKRKLIRTQEPNISFAFKVIAELPII"
gene 285238..285420
/locus_tag="A1C_01550"
/db_xref="GeneID:5645575"
CDS 285238..285420
/locus_tag="A1C_01550"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493129.1"
/db_xref="GI:157825409"
/db_xref="GeneID:5645575"
/translation="MTWLLIAIGLTVLVLIIGVVSMAIGGKFDKKFSSKFMTFRVFFQ
AVSIFLLIIIYFYKAN"
gene complement(285477..285662)
/locus_tag="A1C_01555"
/db_xref="GeneID:5645576"
CDS complement(285477..285662)
/locus_tag="A1C_01555"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493130.1"
/db_xref="GI:157825410"
/db_xref="GeneID:5645576"
/translation="MHLGDIEEIAEQLEKHCSNQYNEKISLLKLEKLIRDLKDFEDED
GKVEEVTLEEILDKCEE"
misc_feature complement(285495..285662)
/locus_tag="A1C_01555"
/note="Iron-sulphur cluster assembly; Region:
Fe-S_assembly; cl01123"
/db_xref="CDD:174541"
gene 285876..286403
/gene="def"
/locus_tag="A1C_01560"
/db_xref="GeneID:5645577"
CDS 285876..286403
/gene="def"
/locus_tag="A1C_01560"
/note="cleaves off formyl group from N-terminal methionine
residues of newly synthesized proteins; binds iron(2+)"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_001493131.1"
/db_xref="GI:157825411"
/db_xref="GeneID:5645577"
/translation="MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDG
AGLAAVQVGVLKRILVIDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISV
PGQRIEVARPESIKIRYLDYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKR
DVVLRKLKKLKNNIV"
misc_feature 285891..286325
/gene="def"
/locus_tag="A1C_01560"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature order(286005..286013,286026..286028,286167..286175,
286296..286301,286308..286310)
/gene="def"
/locus_tag="A1C_01560"
/note="active site"
/db_xref="CDD:29602"
misc_feature order(286011..286013,286026..286028,286173..286175,
286299..286301)
/gene="def"
/locus_tag="A1C_01560"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature order(286170..286172,286296..286298,286308..286310)
/gene="def"
/locus_tag="A1C_01560"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 286415..287311
/gene="fmt"
/locus_tag="A1C_01565"
/db_xref="GeneID:5645578"
CDS 286415..287311
/gene="fmt"
/locus_tag="A1C_01565"
/EC_number="2.1.2.9"
/note="modifies the free amino group of the aminoacyl
moiety of methionyl-tRNA(fMet) which is important in
translation initiation; inactivation of this gene in
Escherichia coli severely impairs growth"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_001493132.1"
/db_xref="GI:157825412"
/db_xref="GeneID:5645578"
/translation="MGTPEFAVPALKKLIMHHEVKVVFTQQPKAKGRGLDLVKSPIHQ
LAFEHQIPVYTPSTLRNDDIVNLINKINADIIVVIAYGFILPKAILEDKKYGCLNIHP
SDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDTGIDTGDILMKEDFYLERRTTLEELHN
KCANLGAALLIRTLANIDNIVPIKQSSEGVTYANKLTKEEGKINWHESAYKIDCKIRG
MNPWPGAYFSYNDKVIKILEAEYLNTNHHVTAGTVISDKLEIACGSGILQVKKLQQES
KKALNVEEFLRGTNILKATILK"
misc_feature 286415..287308
/gene="fmt"
/locus_tag="A1C_01565"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature 286415..287002
/gene="fmt"
/locus_tag="A1C_01565"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(286418..286420,286430..286435,286646..286669,
286682..286684,286709..286720,286742..286744,
286802..286804,286808..286813,286820..286825)
/gene="fmt"
/locus_tag="A1C_01565"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(286421..286426,286430..286432,286490..286492,
286502..286504,286508..286519,286649..286660,
286709..286711,286715..286720,286742..286750,
286997..286999)
/gene="fmt"
/locus_tag="A1C_01565"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(286646..286648,286655..286657,286661..286669,
286682..286684,286709..286711,286808..286813,
286820..286825)
/gene="fmt"
/locus_tag="A1C_01565"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(286709..286711,286715..286717,286823..286825)
/gene="fmt"
/locus_tag="A1C_01565"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 287009..287260
/gene="fmt"
/locus_tag="A1C_01565"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(287078..287080,287111..287113,287117..287119,
287231..287233,287237..287239,287243..287248,
287252..287254)
/gene="fmt"
/locus_tag="A1C_01565"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 287428..287529
/locus_tag="A1C_01570"
/db_xref="GeneID:5645579"
CDS 287428..287529
/locus_tag="A1C_01570"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493133.1"
/db_xref="GI:157825413"
/db_xref="GeneID:5645579"
/translation="MINIVDDEVEDQTKLFTETQFLVQKLRTVKISI"
gene 287754..287915
/locus_tag="A1C_01575"
/db_xref="GeneID:5645256"
CDS 287754..287915
/locus_tag="A1C_01575"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493134.1"
/db_xref="GI:157825414"
/db_xref="GeneID:5645256"
/translation="MKAVNHVLQKGRFFFEDLGGTAETKFRTANLNKKPTNHILKRGS
NNFEPPHKK"
gene 288151..290928
/locus_tag="A1C_r01"
/db_xref="GeneID:5696491"
rRNA 288151..290928
/locus_tag="A1C_r01"
/product="23S ribosomal RNA"
/db_xref="GeneID:5696491"
gene 291173..291290
/locus_tag="A1C_r06953"
/db_xref="GeneID:5645257"
rRNA 291173..291290
/locus_tag="A1C_r06953"
/product="5S ribosomal RNA"
/db_xref="GeneID:5645257"
gene complement(292449..293501)
/locus_tag="A1C_01580"
/db_xref="GeneID:5645258"
CDS complement(292449..293501)
/locus_tag="A1C_01580"
/note="COG1485 Predicted ATPase"
/codon_start=1
/transl_table=11
/product="putative ATPase n2B"
/protein_id="YP_001493135.1"
/db_xref="GI:157825415"
/db_xref="GeneID:5645258"
/translation="MIKSYTSLILDSKQAALLEALKQLASELNKPKSLFKFFNQNNLK
SGIYLYGPVGSGKTMLMNSFFEELATSKIITHYQNFMQEVHKSMHKLQIENQKDIILK
IAKDCAKQTRVLGIDEFEIKDITDAMIIGRLFNALIKQNIFIFITSNTSPNNLYKDGL
QRESFVPFIKIINNTFYVKYLDNHHDYRFDKALGVKGERIIYPLTLEHQNKLEKIITE
ISDNKLVAQNIQVLGREISFQKVYKRILVTDYNELFTRDLSYIDYVNICQNFNVVIVK
NVHTIDANDTNTAVRFINFIDNAYFYKILLFMSLEDKPSKIYQGSARAAEFKRTISRL
NGMNSESYLLNNDFKH"
misc_feature complement(292467..293414)
/locus_tag="A1C_01580"
/note="Predicted ATPase [General function prediction
only]; Region: COG1485"
/db_xref="CDD:31674"
misc_feature complement(293046..293408)
/locus_tag="A1C_01580"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(293328..293351)
/locus_tag="A1C_01580"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(293058..293060,293151..293153,
293325..293348))
/locus_tag="A1C_01580"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(293148..293165)
/locus_tag="A1C_01580"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(293718..294833)
/locus_tag="A1C_01585"
/db_xref="GeneID:5645259"
CDS complement(293718..294833)
/locus_tag="A1C_01585"
/note="COG0809
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
(queuine synthetase)"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_001493136.1"
/db_xref="GI:157825416"
/db_xref="GeneID:5645259"
/translation="MKLSAFDFNLPSELIAQSPSSERDNSDLLIAAMPPIKTKFYNII
DYLKEGDLLVLNNSKVIKAKLHLWKNVTINLNQKLSDDSWSAFAKPTRKLHVNDEFYF
DNHKVIITEKLVMGEIKVKFDLDNISVFEFLDKYGEMPLPVYIRRSHSLYHTTSTLCH
TRENGYSEKLDAFFRRNDIKDKDNDIVYDNERYQTIYSQIEGSVAAPTAGLHFTNDIL
DKLKTKGIHTAFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITPETAEIINKAKQERR
RIIAVGTTTLRTVESFCNNGIIKAGSFETDIFITPGFKFQTADMLLTNFHFPKSTLFM
LICAFAGFKEMHELYKYAIKEKMRFFSYGDATLLYRK"
misc_feature complement(293721..294833)
/locus_tag="A1C_01585"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region:
PRK01424"
/db_xref="CDD:134556"
misc_feature complement(293727..294833)
/locus_tag="A1C_01585"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
gene 295270..295749
/locus_tag="A1C_01590"
/db_xref="GeneID:5645260"
CDS 295270..295749
/locus_tag="A1C_01590"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493137.1"
/db_xref="GI:157825417"
/db_xref="GeneID:5645260"
/translation="MEAGYLDMVAFLLENGSDLHLQGMENFLLFRATVVLNRNVVMVA
KLLAYGANMEDTIFERLTYLSKDLWIQTLQDKQHKIDMIKVFLQYGANPDVVYSNGQM
IKDIEAVYEPMRALLTFEAAFRRNDDKGIKVIDKKDLAAFIQWKSEIWPVIKDISKD"
misc_feature 295273..295572
/locus_tag="A1C_01590"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cl02529"
/db_xref="CDD:207631"
misc_feature 295273..295557
/locus_tag="A1C_01590"
/note="Ankyrin repeats (3 copies); Region: Ank_2;
pfam12796"
/db_xref="CDD:205076"
gene 295792..296037
/locus_tag="A1C_01595"
/db_xref="GeneID:5645261"
CDS 295792..296037
/locus_tag="A1C_01595"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493138.1"
/db_xref="GI:157825418"
/db_xref="GeneID:5645261"
/translation="MKLGWDDSIEQLLIKLREKIAQLAPSLKFQCFVKIADIIKGNVE
CHITFDYELTYNNALDLLKKWVSSSSNRRSIGTTDLV"
gene complement(296235..298004)
/locus_tag="A1C_01600"
/db_xref="GeneID:5645432"
CDS complement(296235..298004)
/locus_tag="A1C_01600"
/note="COG1132 ABC-type multidrug transport system, ATPase
and permease components"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATP-binding protein"
/protein_id="YP_001493139.1"
/db_xref="GI:157825419"
/db_xref="GeneID:5645432"
/translation="MIKYPTLSKSTFSLGIYFLKFDNVKITLLTVICILLGMIPAIDS
ILLQKIIDLIESFSDENANNLLSSMIYWAVFYALWWESINIAYRSYDYLYLKTIPVIK
GKILNELYNYTQYHSHKFFQDNLAGHISNRITETARSFEMIISIFGEKILRKLAIIVF
AFIALYSVHYVFATIFILWITVFVGLSVLFSDRINKYSLNYARSQSFVAGSIVDAISN
INAVRMFTAHKFERQHLETRVENTVADEQTMQFFMFKLRYALGTSCSIMILIMIYYLS
KLRSELSISIGDCVLVLTLCINVADDIWDLTQEIGDMFEQVGAFNQGLSLMAPHIITD
IENATPLDIKEGVIEFRNVTFNYNHNNNLFYNKSVLIPSKQKVGLVGFSGSGKTTFIS
LLTRLHDIEEGMILIDNQNIKNVTQDSLRKAISLIPQEPVLFHRTILENIRYGKKEAT
LEEVIIAAKAAHIHDVINNLQDGYDTMCGERGNNLSGGQRQRIIIARAILKNAPILIL
DEATSSLDSETESLIQESTDYLMQNKTVIVIAHRLSTLLNMDRILVFDKGSIIDDGSH
AELLKNSKLYQKLWKSQVKGLIM"
misc_feature complement(296256..297953)
/locus_tag="A1C_01600"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(297120..297905)
/locus_tag="A1C_01600"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(296256..296963)
/locus_tag="A1C_01600"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(296841..296864)
/locus_tag="A1C_01600"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(296382..296384,296475..296480,
296718..296720,296838..296846,296850..296855))
/locus_tag="A1C_01600"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(296718..296729)
/locus_tag="A1C_01600"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(296523..296552)
/locus_tag="A1C_01600"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(296475..296492)
/locus_tag="A1C_01600"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(296457..296468)
/locus_tag="A1C_01600"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(296376..296396)
/locus_tag="A1C_01600"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 298188..298469
/locus_tag="A1C_01605"
/db_xref="GeneID:5645433"
CDS 298188..298469
/locus_tag="A1C_01605"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493140.1"
/db_xref="GI:157825420"
/db_xref="GeneID:5645433"
/translation="MQEKEVSSNFLEEQELEEKYKEDDSPFFDVKYICQASLLITDSI
RKGYDVAQLSNGDINVTEVRIVNVHYSWNSEKGKFVKTNQIEFNSSKGG"
misc_feature 298188..298466
/locus_tag="A1C_01605"
/note="Protein of unknown function (DUF2671); Region:
DUF2671; pfam10877"
/db_xref="CDD:151326"
gene 298679..300034
/locus_tag="A1C_01610"
/db_xref="GeneID:5645434"
CDS 298679..300034
/locus_tag="A1C_01610"
/note="COG1271 Cytochrome bd-type quinol oxidase, subunit
1"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit I"
/protein_id="YP_001493141.1"
/db_xref="GI:157825421"
/db_xref="GeneID:5645434"
/translation="MEFDQVLLSRIQFAFTISFHIIFPAFTIGLASFLAVLEGLWLKT
KKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVF
TAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTLISAFWILAASSWMHTPAGFEL
RGDGFFFPLNWLEIIFNPSFPYRFFHMITAAYLTTSFIIGGVASFYLLNNRYKEHAKI
MLFMSVLMALIVAPIQIFIGDLHGLNTLKYQPVKVSAMEGIWNTEKGAAFNLIGFPDM
AEEKTKYAVEIPYASSLILTHNLDGEVKGLKEWTKEDRPPVTVVFFSFRVMIGIGFLM
VFTGIAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILK
TVDAVSPVLGEYVFISLMAFVVVYVIIFGAGIYYIMHLIKQGIEVIDNKETYGGMYNQ
L"
misc_feature 298700..299986
/locus_tag="A1C_01610"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:201906"
gene 300129..301148
/locus_tag="A1C_01615"
/db_xref="GeneID:5645435"
CDS 300129..301148
/locus_tag="A1C_01615"
/note="COG1294 Cytochrome bd-type quinol oxidase, subunit
2"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit II"
/protein_id="YP_001493142.1"
/db_xref="GI:157825422"
/db_xref="GeneID:5645435"
/translation="MLNFAPYIDLPLVLGGLIATAICLYVLLDGFDLGVGILFPFAPT
DDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPMAYSLLMPALYIPIILMLLGLIFR
GVAFEFRFKANIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIKIEGRAFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKKTQDWAYKSALYILVYVALFMGLVSLCV
PFLNNHINYRWFSVPNIYYLSIVPIVTALIFIKLIKAVKQKKEVKPFVYTILLFLLGY
LGLAISIWPYIVPYKVTLETAAAAPESQSLLLLGAGIFLPVILSYTFYCYYIFRGKSS
HHPIY"
misc_feature 300153..301118
/locus_tag="A1C_01615"
/note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
pfam02322"
/db_xref="CDD:190279"
misc_feature 300177..301142
/locus_tag="A1C_01615"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene 301395..302270
/locus_tag="A1C_01620"
/db_xref="GeneID:5645436"
CDS 301395..302270
/locus_tag="A1C_01620"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="beta 1,4 glucosyltransferase"
/protein_id="YP_001493143.1"
/db_xref="GI:157825423"
/db_xref="GeneID:5645436"
/translation="MEKISAFIITKNEAARIARAINSVKNITDEVIVVDNESTDDTVN
IAQKLGAKVIVKPWLGYVGQKSFAESLCVNDWVLNIDADEELSKELQDEIEYIFASHN
QDCYLAYQIKLLIMHRNDQKPRMLAPFNKCTRLYNKKFASFANTVNSTTHDSVVFNKD
VDFAGKIYLLNKAAYHYSGTSIEQLVTKAHFYSSEQAKDLVKQGKKLSNFRLTTEMIW
WFFKAFFIRRYFVFGFDGFVDSIIFAFARFLRLAKLRESSLKSNNVIASDYRYDCMDT
KSSLEGVKRRGNPEQ"
misc_feature 301395..302183
/locus_tag="A1C_01620"
/note="Predicted glycosyltransferases [General function
prediction only]; Region: COG1216"
/db_xref="CDD:31409"
misc_feature 301401..302114
/locus_tag="A1C_01620"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature order(301635..301637,301641..301643)
/locus_tag="A1C_01620"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene 302409..303647
/locus_tag="A1C_01625"
/db_xref="GeneID:5645437"
CDS 302409..303647
/locus_tag="A1C_01625"
/note="COG0612 Predicted Zn-dependent peptidases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493144.1"
/db_xref="GI:157825424"
/db_xref="GeneID:5645437"
/translation="MKENFNVSKLKNGLTILTYNMPYVNSVAINLIAKVGARYENAEE
EGISHFLEHMAFKGTKTRTAKQIAEEFDSIGGHFNAYTGHENTVYYVRVLSENCDKAV
NILADIIQNSIFADEEIAKEYQVIMQEIAHHQDNPDDLVYEKFYNKVYRDQPLGKLIL
GTTKTIAAFTQEHFLTFIGKHYNAENLYLSIAGNIDHDKIVIIAEQLFSSLKQGVKSS
FIPAKYIGGNGFIHKELEQTSLVLGFEGTSYINLEKLYQTHLLSIIFGGGMSSRLFQT
IREKLGLAYAVGSYNSAYFDSGVFTIYASTAHDKLELLYREIKNEIIKMTETVSAEEI
IRAKTQLRSNLQMAQEKNAYKSEEIGKNYSVFGKYISPEEIMEIITNIKTDDIINTAN
KIFSGTTTSAIIGPNGLREV"
misc_feature 302409..303632
/locus_tag="A1C_01625"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 302454..302897
/locus_tag="A1C_01625"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature 302910..303431
/locus_tag="A1C_01625"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 303728..304438
/locus_tag="A1C_01630"
/db_xref="GeneID:5645438"
CDS 303728..304438
/locus_tag="A1C_01630"
/EC_number="6.3.2.6"
/note="catalyzes the formation of
(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
carboxamido)succinate from
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
L-aspartate in purine biosynthesis; SAICAR synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_001493145.1"
/db_xref="GI:157825425"
/db_xref="GeneID:5645438"
/translation="MKTQIYKGSSKILYSAEEDFLLIMAFSDNGILESGEIIEVSGKG
VLNNNISSFLMDKLEMIGIENHFIEKINMREQLIQYVEVFPVQVIISSVACGRFVKEF
GMDEGYVFDKPIIDFKVRSREFKYPIVNEYQILNFSWLTLDEIKAVKEQALRIYAFLS
GLFMGVGIRLVECKLEFGRVLNGEESIIMLTDEISPDNCRLWHIHSNEKLGFELLENK
PNKAFESYQLIADRLKEK"
misc_feature 303728..304435
/locus_tag="A1C_01630"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature 303740..304432
/locus_tag="A1C_01630"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature order(303740..303745,303749..303754,303758..303760,
303764..303769,303791..303793,303797..303799,
303923..303925,303962..303964,303968..303970,
303974..303976,304085..304087,304253..304255,
304298..304303)
/locus_tag="A1C_01630"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature order(303743..303745,303749..303760,303764..303766,
303791..303793,303827..303829,303926..303928,
303959..303970,303974..303976,303986..303988,
303992..303994,303998..304000,304010..304018,
304079..304081,304085..304087,304103..304105,
304241..304249,304253..304255,304301..304303,
304316..304327)
/locus_tag="A1C_01630"
/note="active site"
/db_xref="CDD:133470"
misc_feature order(303827..303829,303986..303988,303992..303994,
303998..304000,304010..304018,304079..304081,
304103..304105,304241..304249,304316..304327)
/locus_tag="A1C_01630"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene 304742..306343
/locus_tag="A1C_01635"
/db_xref="GeneID:5645658"
CDS 304742..306343
/locus_tag="A1C_01635"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493146.1"
/db_xref="GI:157825426"
/db_xref="GeneID:5645658"
/translation="MKIRFIIISFISLILVGWGYAAYKFEHQSKENIISILDEYGEYI
AYDSIKVNKYRFSVTLNKVMLRPIDFYFDEIVIRHIPFLNITKIDSYGNNVKITTAQD
EKNIFYSPDHHTTIWFRKSLFNREPGYWKLSLSDNKSTLYSSLDAEKLAESDISNSII
TNTKTSDNLNLLILDRKNTVSFISENYRRSLYDKIFEFFGDKIANDSDTASFEYGLTK
LDILNLPIAYNSKLKLKYSDELVALGKLLIQNFLLNQKQEENMHSVIFMQMLGELVKG
RPFLFFCDIERKGKVESNSYKLNIDKDKIFDFALNIKYTVEPSETYEKTAVEVLGSYF
SNGLNKRAELDNNFKLTSPITQEDGEKVMGVFAKINNSEFNLKGEFDPEAKKLSGKTN
LVMDDFNFAIDIDMPHLDNPLMLESVIKLSDPNVFINNFVHYTDNAVIPVLNKIEDSK
AFALKLGKQSSVIKQYGFRAIEAFSKNSELKDGESLVVDVKSKDAVLTFNDRAIDQIL
SDARVLEFMNAMVMIDQERKQLVGK"
gene 306467..308374
/gene="thrS"
/locus_tag="A1C_01640"
/db_xref="GeneID:5645659"
CDS 306467..308374
/gene="thrS"
/locus_tag="A1C_01640"
/EC_number="6.1.1.3"
/note="catalyzes a two-step reaction, first charging a
threonine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; catalyzes the formation
of threonyl-tRNA(Thr) from threonine and tRNA(Thr)"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_001493147.1"
/db_xref="GI:157825427"
/db_xref="GeneID:5645659"
/translation="MINISFPDGSVRQFENDITAYEVANAISMSLAKAAMVAEINGEL
KDLSTVIENDCKLRILTAKDSECLEIIRHDAAHIIAEAAKELFPDIQVTIGPAIENGF
FYDFAKDKPFTPDDVAMIEARMHEIVKRNEQITRELWNRDKAIEFFKSIGEHYKAEII
ASIPAGEQITLYRQGNFIDLCRGPHAPSTGFVKHFKLMKVAGAYWRGDSRNEMLQRIY
GTAWATKEQLDNYLLMLEEAEKRDHRKLGKELDLFHFQEEAQGMVFWHDKGWSIYNTI
EQYIRKKIRKNGYTEVKTPVLVDKSLWEASGHWEKFRDDMFALDTDDKTLALKPMNCP
CHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCTEEQI
TDETVSFCKLLTEVYKDFGFTNISVKFSDRPEVRAGSNGTWDKAENALKEAVEKAGFT
YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLPERLDASYIAASGEKKRPVM
LHRAILGSLERFIGILIEEYAGCFPLWLAPIQVAIATITSDLNDYALEVQKALIDNGV
RTDINISPDKINYKIREFYNQKIPMIAVIGKQEQENKQVTIRRLRTTEQEVLSLEQLI
TLIKEENEKYL"
misc_feature 306467..308368
/gene="thrS"
/locus_tag="A1C_01640"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:179011"
misc_feature 306470..306652
/gene="thrS"
/locus_tag="A1C_01640"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature 306971..307117
/gene="thrS"
/locus_tag="A1C_01640"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature 307187..308080
/gene="thrS"
/locus_tag="A1C_01640"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:29816"
misc_feature order(307196..307198,307235..307237,307388..307390,
307400..307402,307409..307414,307454..307456,
307550..307552,307556..307558,307562..307570,
307583..307591,307598..307600,307604..307606,
307889..307891,307898..307903,307913..307915,
308009..308014,308021..308023)
/gene="thrS"
/locus_tag="A1C_01640"
/note="active site"
/db_xref="CDD:29816"
misc_feature order(307208..307210,307226..307228,307232..307240,
307244..307246,307250..307252,307256..307261,
307265..307267,307274..307276,307319..307324,
307334..307339,307343..307345,307349..307357,
307361..307363,307415..307423,307427..307438,
307442..307444,307478..307483,307490..307498,
307502..307510,307547..307549,307553..307555,
307562..307564,307592..307597,307676..307678,
307802..307810,307955..307957,307961..307963)
/gene="thrS"
/locus_tag="A1C_01640"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29816"
misc_feature 307334..307357
/gene="thrS"
/locus_tag="A1C_01640"
/note="motif 1; other site"
/db_xref="CDD:29816"
misc_feature 307547..307558
/gene="thrS"
/locus_tag="A1C_01640"
/note="motif 2; other site"
/db_xref="CDD:29816"
misc_feature 308009..308023
/gene="thrS"
/locus_tag="A1C_01640"
/note="motif 3; other site"
/db_xref="CDD:29816"
misc_feature 308078..308350
/gene="thrS"
/locus_tag="A1C_01640"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:29800"
misc_feature order(308102..308107,308210..308212,308228..308230,
308252..308254,308282..308284,308288..308290)
/gene="thrS"
/locus_tag="A1C_01640"
/note="anticodon binding site; other site"
/db_xref="CDD:29800"
gene 308762..308878
/locus_tag="A1C_01645"
/db_xref="GeneID:5645660"
CDS 308762..308878
/locus_tag="A1C_01645"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATPase and permease"
/protein_id="YP_001493148.1"
/db_xref="GI:157825428"
/db_xref="GeneID:5645660"
/translation="MHIQLLLDLFTQNAKITFAQSYKPVMVFIAAQAILDLA"
gene complement(308967..309164)
/locus_tag="A1C_01650"
/db_xref="GeneID:5645661"
CDS complement(308967..309164)
/locus_tag="A1C_01650"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493149.1"
/db_xref="GI:157825429"
/db_xref="GeneID:5645661"
/translation="MGVIISYKITAYYISETIIDIETNIENAKFLYLYPISWSKSYKE
QLVLRTDEVRYPPLYIINDKD"
misc_feature complement(<308970..>309080)
/locus_tag="A1C_01650"
/note="Zn-ribbon-containing, possibly nucleic-acid-binding
protein (DUF2310); Region: DUF2310; cl02380"
/db_xref="CDD:154884"
gene complement(309568..309975)
/locus_tag="A1C_01655"
/db_xref="GeneID:5645662"
CDS complement(309568..309975)
/locus_tag="A1C_01655"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493150.1"
/db_xref="GI:157825430"
/db_xref="GeneID:5645662"
/translation="MSNSNTHILIAICCLALLFLMYKKIAARKKTILPAEGGNIDNSP
NVALNSQKPENKKLTLQERIELSWKFLYDITEVILNKFSKEDVMQVNKCGQVLFENGV
RYEHVVDLALPQVKSHTQAVEQEPSKGKKALGV"
misc_feature complement(309658..309918)
/locus_tag="A1C_01655"
/note="Protein of unknown function (DUF2660); Region:
DUF2660; pfam10859"
/db_xref="CDD:151308"
gene complement(310589..310714)
/locus_tag="A1C_01660"
/db_xref="GeneID:5645663"
CDS complement(310589..310714)
/locus_tag="A1C_01660"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493151.1"
/db_xref="GI:157825431"
/db_xref="GeneID:5645663"
/translation="MQMLRIFIQISDILEKVNNLMDSEKLLPKIIKLHNDIKEIR"
gene complement(310788..311063)
/locus_tag="A1C_01665"
/db_xref="GeneID:5645664"
CDS complement(310788..311063)
/locus_tag="A1C_01665"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493152.1"
/db_xref="GI:157825432"
/db_xref="GeneID:5645664"
/translation="MNVKDLEDHLFYILQNSLNELSHTENIDVEKIEKFFNRTIQESL
TTLSAVLEKAYQEHLKTKDIFVFDGIIVEKCLNVLAQVLKFQEERIR"
gene 311388..312752
/locus_tag="A1C_01670"
/db_xref="GeneID:5644970"
CDS 311388..312752
/locus_tag="A1C_01670"
/note="COG1538 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="TolC family type I secretion outer membrane
protein"
/protein_id="YP_001493153.1"
/db_xref="GI:157825433"
/db_xref="GeneID:5644970"
/translation="MRKLATFIITLLLTGSATAVDLQEALTAGYKNNEELKAARIKFL
NAIEQFPQAFSGFMPSAGLQINRQNSKTKYNRKYTDKLGLTTRQTDSNQGALTIEQSL
FSGGSSVAALKAAQSGFRASRGEYYAGEQKILLNLITAYLDCFESKEKYDISESRVRT
NIQQVNTVEEKLRLGEATAIDIATARAGLAAAETNKLAAYADFQGKKANFIRVFGIEA
TDLTMPNLPDKLPASLDELTRKAAKFNPDIDSARHNVISAKALEMVQKGKLLPQVSVK
LQSGRTDYNPQDPAVQNINNKSYTTILSVNIPIYPDGGAQYSRIRSAKNQTRSSAVQL
DSAIKQTQAGVVSVWEGFEAAKSRIVAANQGVDAAQISYDGTVQEEIVGSKTILDVLD
AEQKLYEAKITRVDAYKNSVLAAYQMKLLTGELTAQSLKLKVKYFSPEEEFKTIKKKM
FIGF"
misc_feature 311451..312698
/locus_tag="A1C_01670"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and secretion];
Region: TolC; COG1538"
/db_xref="CDD:31727"
gene 312754..313152
/locus_tag="A1C_01675"
/db_xref="GeneID:5644971"
CDS 312754..313152
/locus_tag="A1C_01675"
/note="COG3827 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493154.1"
/db_xref="GI:157825434"
/db_xref="GeneID:5644971"
/translation="MSKENNKKQDMSVEDILKSIKGVINKHKNHIYENDSEDEDILEL
TEIVNQDEEEKLISPKSAEAVGDIFKNFTDTIKDKNLDNNISSKNALEELVTKMLKPE
LKAWLNKNLPVLVKELVEIEIKKLVQNSKR"
misc_feature <312754..313149
/locus_tag="A1C_01675"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3827"
/db_xref="CDD:33620"
gene 313215..315029
/locus_tag="A1C_01680"
/db_xref="GeneID:5644972"
CDS 313215..315029
/locus_tag="A1C_01680"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="ankyrin repeat-containing protein"
/protein_id="YP_001493155.1"
/db_xref="GI:157825435"
/db_xref="GeneID:5644972"
/translation="MLNKSCKILFFINLLLVVVQSYASPPPLPTSLPAAEVDTKDKDV
SSNSDISFFDKFKQFFSKSKKKNIHTKQPNEQTKAAPQEEPKLASHEHTEDDVSKPFI
DVGNTALPSAIASYEHENGVNLAFHDIQESSETEASKPFIDVGNTALPSAIASYEHEN
GVNLAFHDIQESSETEASKPFIDVGNTALPSAIASYEVHEEEVASNEHKDTNLSSNII
TPNVPRPIVSMPPAQAGSYVVPPHRPVQIYKPTNLLSVHRPIPLNTPPDAYKEAESVA
PQSIPNMPAVSPPVIQDITTPSTMPTTVPSAVPSNVPAHRVMPTNQPSTQPITQTSPN
TPVTTPSKVVPKIDSSAEINNSQETFVAVSDVQKKQDWNTPLIPVVVVKPNQPQTLEK
QVNSQTTHNQEKSPPVSSQNVTIQKQDNKVNNETSVSTIKFVKDETQMLLLPDDDIVL
GKLTEQATLEQMDMYGYIALFQKKEEWIASAKRRKVVESFIKYDSYINKKQDIYSNLS
YCKAVDNAFRAVDSNNLFGLRALLDVYPILQEKSRSGETLLTAAIYNDNYYLAKFLVI
RGVQIATLNDECQYPLDIALAQANTNIACMLIKAKGYN"
misc_feature 314769..>315014
/locus_tag="A1C_01680"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
misc_feature 314853..315008
/locus_tag="A1C_01680"
/note="Ankyrin repeats (many copies); Region: Ank_4;
pfam13637"
/db_xref="CDD:205814"
gene 315190..317178
/locus_tag="A1C_01685"
/db_xref="GeneID:5644973"
CDS 315190..317178
/locus_tag="A1C_01685"
/note="decatenates newly replicated chromosomal DNA and
relaxes positive and negative DNA supercoiling"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit B"
/protein_id="YP_001493156.1"
/db_xref="GI:157825436"
/db_xref="GeneID:5644973"
/translation="MNDLLSFNKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGG
TDSNAMHHLVSEVLDNAMDEALAGFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPD
KSALEVILTTLHSGGKFSNNVYHTAGGLHGVGISVVNALSKHLEIKVYKQGKLYSQSY
SQGKKLTDLICEESYKRLRGTSINFTPDPEIFSEKLHFNPKKIYELARSKAYLYRGVT
IEWECEVEVLSDIPKKALINFPNGLKDYLSSKITLDNLIIPEIFSGNVESTPDGIKLE
WAICWQNNDNSAFIQSYCNTVTTPQGGTHEQGLKSAILRGLKAYGEMIGNKKAANLTI
EDILETACVVLSIFIAEPSFQGQTKEKLVSNGVSKPVENIIKDHFDHFLSSDKALATN
LLEHVIAIAEFRISKKNEKNISRKNATQKLRLPGKLADCTRTSPEGTELFIVEGDSAG
GSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAIQDLEIALACGSLKNYKKENL
RYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQSNKTYYA
GDEEEKAKLMGKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLNVTLEDFQ
NVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELDI"
misc_feature 315244..317157
/locus_tag="A1C_01685"
/note="DNA topoisomerase IV, B subunit, proteobacterial;
Region: parE_Gneg; TIGR01055"
/db_xref="CDD:130127"
misc_feature 315337..315636
/locus_tag="A1C_01685"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(315355..315357,315367..315369,315376..315378,
315442..315444,315448..315450,315454..315456,
315460..315465,315583..315594)
/locus_tag="A1C_01685"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 315367..315369
/locus_tag="A1C_01685"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(315454..315456,315460..315462,315583..315585,
315589..315591)
/locus_tag="A1C_01685"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 315910..316428
/locus_tag="A1C_01685"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 316072..316074
/locus_tag="A1C_01685"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(316240..316242,316249..316254,316258..316260,
316393..316398,316408..316410,316420..316422)
/locus_tag="A1C_01685"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(316258..316260,316264..316266)
/locus_tag="A1C_01685"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 316504..316845
/locus_tag="A1C_01685"
/note="Topoisomerase-primase domain. This is a nucleotidyl
transferase/hydrolase domain found in type IA, type IIA
and type IIB topoisomerases, bacterial DnaG-type primases,
small primase-like proteins from bacteria and archaea, OLD
family nucleases from...; Region: TOPRIM; cl00718"
/db_xref="CDD:207177"
misc_feature order(316522..316527,316534..316536,316741..316743,
316747..316749,316753..316755)
/locus_tag="A1C_01685"
/note="active site"
/db_xref="CDD:173773"
misc_feature order(316522..316524,316741..316743)
/locus_tag="A1C_01685"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173773"
misc_feature 316936..317127
/locus_tag="A1C_01685"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 317290..318639
/locus_tag="A1C_01690"
/db_xref="GeneID:5644974"
CDS 317290..318639
/locus_tag="A1C_01690"
/note="COG0793 Periplasmic protease"
/codon_start=1
/transl_table=11
/product="tail-specific protease"
/protein_id="YP_001493157.1"
/db_xref="GI:157825437"
/db_xref="GeneID:5644974"
/translation="MLLRLIITLFFIINSICTFAEAEKETENKISNQEAYKQFQDVFE
RIEKDYVQVPDRQKMIDEAINGMLSSLDPHSSYYTDEDLEDIFTFTKGEFGGIGVEIM
YDSGAIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPNKAIKEMRGMPGTKVKL
LIIKEEEAKPQELELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAVVKKLK
TESKDNLKGIILDLRNNAGGILDQAIAVSDYFIDSGVIVTTKGRTTSSNSETKANEFS
LKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTRSFGKGSVQALTQINSRAAV
KLTISKYYTPSGRSIQAEGIEPDILIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEK
NKDSKKETKAKNNKQEENELSELYKKDYQFARAYDVITGLILNKKLAAKEQVKQEDK"
misc_feature 317344..318447
/locus_tag="A1C_01690"
/note="Periplasmic protease [Cell envelope biogenesis,
outer membrane]; Region: Prc; COG0793"
/db_xref="CDD:31136"
misc_feature 317389..>317526
/locus_tag="A1C_01690"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 317569..317826
/locus_tag="A1C_01690"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(317575..317586,317590..317592,317725..317730,
317737..317742)
/locus_tag="A1C_01690"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <317869..318372
/locus_tag="A1C_01690"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(318169..318171,318244..318246)
/locus_tag="A1C_01690"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene 318835..320328
/locus_tag="A1C_01695"
/db_xref="GeneID:5644975"
CDS 318835..320328
/locus_tag="A1C_01695"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase sensor protein"
/protein_id="YP_001493158.1"
/db_xref="GI:157825438"
/db_xref="GeneID:5644975"
/translation="MNHNKYIVRLSFIILFLNIVINMMFYRYFMIKEMIVKQVALEHT
KIVELYTDNIWNTHQNVISKLHKFDYLKLLQDQDFINFAKITAQWFTNLNINISLYDL
KGNKFITSNMLHMYSVDNYKDDSLVEIFTAKIDKIFLKSFTSKAPLHDAFDGITSHIL
LPRVVIENESDLTVEEASFVTSYIPVIDNNLDFPVDAVFEINTNITSQWQNITALEQK
VFITFIIIFIIFCTIIISNTNYARQIIEEQFETNRNLKAQIVKVEQTSSSNTKFFANI
SHELRTPLNAIIGFSEILMSERDAEKSKNYIKDINDAGKHLLSMINDILDLSKASADK
LKVDSIDLDLNKLISSSLALVKPRADQAEVALMSRLPKEHVVIKADPKRLKQVFLNLL
SNAVKFTNSGGSVAITLEKDELAKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSR
KYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFTYDGSIEI"
misc_feature 319642..319821
/locus_tag="A1C_01695"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(319648..319650,319660..319662,319672..319674,
319681..319683,319693..319695,319702..319704,
319750..319752,319762..319764,319771..319773,
319783..319785,319792..319794,319804..319806)
/locus_tag="A1C_01695"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 319666..319668
/locus_tag="A1C_01695"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 319984..320301
/locus_tag="A1C_01695"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(320002..320004,320014..320016,320023..320025,
320098..320100,320104..320106,320110..320112,
320116..320121,320200..320211,320257..320259,
320263..320265,320278..320283,320287..320289)
/locus_tag="A1C_01695"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 320014..320016
/locus_tag="A1C_01695"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(320110..320112,320116..320118,320200..320202,
320206..320208)
/locus_tag="A1C_01695"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 320547..321284
/locus_tag="A1C_01700"
/db_xref="GeneID:5644976"
CDS 320547..321284
/locus_tag="A1C_01700"
/note="COG1729 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493159.1"
/db_xref="GI:157825439"
/db_xref="GeneID:5644976"
/translation="MKFIVLLFTFLFSMFSFGESEPIKGKPLKYVVNNDFENRLDEQE
QEIRRLIGKVEVLQHKIDLLTQNSNIPNQEENTEILEAGDSKKQDVFDIALLKDIPDN
VPKKPIAINKDIAPDKQAYDLALAAYKDNKLTEAKDKFKNFIQKYPNSLLISNAYFWY
GECFFKHKDYNGAAVNYLKGYKESPKGAKSSDGLLKLAIALGELKKTQEACNILDKLD
KDFPTNRTAASKKMAGDAKIKFGCKNK"
misc_feature 320610..321260
/locus_tag="A1C_01700"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1729"
/db_xref="CDD:31915"
misc_feature 320907..320996
/locus_tag="A1C_01700"
/note="Tetratricopeptide repeat; Region: TPR_6; pfam13174"
/db_xref="CDD:205355"
gene 321297..321959
/locus_tag="A1C_01705"
/db_xref="GeneID:5645359"
CDS 321297..321959
/locus_tag="A1C_01705"
/note="COG1038 Pyruvate carboxylase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493160.1"
/db_xref="GI:157825440"
/db_xref="GeneID:5645359"
/translation="MTDILDEVLSDHNEEKRLIFFKKLLPIIIIISMIVITIMVVINN
NKDTRIKNNQKNGDILVKTVGLETTKDNKELAFNTLENLVTISNTKIKEIASLEQVAI
KISEKKYSEAKDLLDKIIVNKEYSEISTAYARIAWCGLVIDDQNLDIQDKEKLTKYLN
YFDDKKKPFWATATIIKAMWDIKNNMKPQAAKNLKNLLTSDNVSDLIKDQAKALLVNL
SK"
misc_feature 321297..321956
/locus_tag="A1C_01705"
/note="Protein of unknown function (DUF2659); Region:
DUF2659; pfam10858"
/db_xref="CDD:151307"
gene 321982..323226
/locus_tag="A1C_01710"
/db_xref="GeneID:5645360"
CDS 321982..323226
/locus_tag="A1C_01710"
/note="COG1520 FOG: WD40-like repeat"
/codon_start=1
/transl_table=11
/product="WD-40 repeat-containing protein"
/protein_id="YP_001493161.1"
/db_xref="GI:157825441"
/db_xref="GeneID:5645360"
/translation="MTKKIALLLLPFILISCSGLGPKRVKNIVELTPKLAIHTNDPIY
LDSNANIHTFNANMLKNKQYSFARSKTITEPIFIGDMIYALDIRSNVSAFSIEKNKII
WSYNLSRHKKDNYIGGGILHHNRKLYVTYGSRMLVVLDAKSGYEIIRRELPDIMRTKP
IVLDDNTILVQTISNQTIALNAETLKTVWEHESIAEVLSASYFMTPIVHHDNVIVTYN
SGQVLALNIKNGEVRWNFEFANLNDYTAIPNFDESSILCTPVHDNMNLYIATGLGKLI
KLNIATGSVIWQVNAEDIQSMSLIGNSLFVTNNARQIAAFNPETGKVKFVADLNDGQD
PKKLKSATFLVPFVGVDNNNKRSLNVISVKGVLYSFDFDNNGLNMIPHIVKIIKNIRY
YGLMADNNLYFSTDRKIIFGSK"
misc_feature 322108..323199
/locus_tag="A1C_01710"
/note="Beta-barrel assembly machinery (Bam) complex
component B and related proteins; Region: BamB_YfgL;
cd10276"
/db_xref="CDD:199834"
misc_feature order(322144..322152,322159..322161,322258..322260,
322264..322266,322273..322281,322288..322290,
322393..322395,322399..322401,322408..322416,
322423..322425,322516..322518,322522..322524,
322531..322539,322546..322548,322651..322653,
322657..322659,322666..322674,322681..322683,
322810..322812,322816..322818,322825..322833,
322840..322842,322924..322926,322930..322932,
322939..322947,322954..322956,323059..323061,
323065..323067,323074..323082,323089..323091,
323188..323190,323194..323196)
/locus_tag="A1C_01710"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199834"
misc_feature 322243..322959
/locus_tag="A1C_01710"
/note="PQQ-like domain; Region: PQQ_2; pfam13360"
/db_xref="CDD:205539"
gene 323320..323787
/gene="rplM"
/locus_tag="A1C_01715"
/db_xref="GeneID:5645361"
CDS 323320..323787
/gene="rplM"
/locus_tag="A1C_01715"
/note="in Escherichia coli this protein is one of the
earliest assembly proteins in the large subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_001493162.1"
/db_xref="GI:157825442"
/db_xref="GeneID:5645361"
/translation="MKTYSAKPSEIEKKWWVIDAKNIVLGRLASRVANMLRGKHKPSF
TPHLDCGDNIIIINAEHVKLTGKKANPRDGKIYYRYTGFPGGIKDTTAGKILSGKHPE
RVIKMAVKRMITRNALGAKQMSNLYVYANSDHPHMAQQPTVYDFAGQNPKNKK"
misc_feature 323362..323715
/gene="rplM"
/locus_tag="A1C_01715"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:88313"
misc_feature order(323389..323391,323395..323400,323407..323409,
323416..323418,323428..323430,323512..323514,
323518..323520,323614..323619,323635..323643,
323647..323655,323659..323667,323671..323673,
323677..323679,323689..323691,323698..323703)
/gene="rplM"
/locus_tag="A1C_01715"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88313"
misc_feature 323617..323619
/gene="rplM"
/locus_tag="A1C_01715"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:88313"
gene 323794..324279
/gene="rpsI"
/locus_tag="A1C_01720"
/db_xref="GeneID:5645362"
CDS 323794..324279
/gene="rpsI"
/locus_tag="A1C_01720"
/note="forms a direct contact with the tRNA during
translation"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_001493163.1"
/db_xref="GI:157825443"
/db_xref="GeneID:5645362"
/translation="MTELKIKTAKVEKHLAKEPLKPVLKTPTQKIDSSGKFYATGKRK
NAVARVWIKVGKGKIVVNKKTIDQYFPSETYVKTILRPFVLTNTIDQYDVICTVRGGG
VSGQKGAILHGISKALDKSVPDFHTILRKGGLLTRDSRVVERKKYGQRKARKKTQFSK
R"
misc_feature 323899..324276
/gene="rpsI"
/locus_tag="A1C_01720"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene 324501..324577
/locus_tag="A1C_t06899"
/db_xref="GeneID:5645363"
tRNA 324501..324577
/locus_tag="A1C_t06899"
/product="tRNA-Met"
/db_xref="GeneID:5645363"
gene 324904..325011
/locus_tag="A1C_01725"
/db_xref="GeneID:5645364"
CDS 324904..325011
/locus_tag="A1C_01725"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493164.1"
/db_xref="GI:157825444"
/db_xref="GeneID:5645364"
/translation="MVKKVDCYKAPEAILTIAAAKALKAVQAEIKKDSY"
gene 325345..325476
/locus_tag="A1C_01730"
/db_xref="GeneID:5644963"
CDS 325345..325476
/locus_tag="A1C_01730"
/note="COG2154 Pterin-4a-carbinolamine dehydratase"
/codon_start=1
/transl_table=11
/product="putative pterin-4-alpha-carbinolamine
dehydratase (PHS)"
/protein_id="YP_001493165.1"
/db_xref="GI:157825445"
/db_xref="GeneID:5644963"
/translation="MNEVWNLYKKYKFLMEFANKITEIAEQEAHHPDFTISWGASTV"
misc_feature <325366..>325473
/locus_tag="A1C_01730"
/note="PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also known
as DCoH (dimerization cofactor of hepatocyte nuclear
factor-1), is both a transcription activator and a
metabolic enzyme. DCoH stimulates gene expression by...;
Region: PCD_DCoH; cl00942"
/db_xref="CDD:193982"
misc_feature order(325375..325377,325387..325389,325399..325401,
325420..325422,325435..325458)
/locus_tag="A1C_01730"
/note="DCoH dimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:48348"
misc_feature order(325375..325377,325387..325389,325435..325437,
325444..325446)
/locus_tag="A1C_01730"
/note="aromatic arch; other site"
/db_xref="CDD:48348"
misc_feature order(325378..325383,325399..325404,325411..325413,
325420..325425)
/locus_tag="A1C_01730"
/note="DCoH /HNF-1 dimer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48348"
misc_feature order(325378..325380,325399..325404,325411..325413,
325423..325425)
/locus_tag="A1C_01730"
/note="DCoH tetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48348"
misc_feature 325429..325437
/locus_tag="A1C_01730"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48348"
gene 325911..326312
/locus_tag="A1C_01735"
/db_xref="GeneID:5644964"
CDS 325911..326312
/locus_tag="A1C_01735"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493166.1"
/db_xref="GI:157825446"
/db_xref="GeneID:5644964"
/translation="MVRELKFAFEDIKSWFLMPEAQIDTVNWDTITTNHCLSNLIINL
FHIREVKDFISNITISNLANAFTTHIIGDNNYNLIQHDSTYYMIESSYDKDISLLSRG
TNECAVFTLGNDTDTSLFSAINELIEGDRDV"
gene complement(326651..327136)
/locus_tag="A1C_01740"
/db_xref="GeneID:5644965"
CDS complement(326651..327136)
/locus_tag="A1C_01740"
/note="hydrolyzes diadenosine polyphosphate"
/codon_start=1
/transl_table=11
/product="dinucleoside polyphosphate hydrolase"
/protein_id="YP_001493167.1"
/db_xref="GI:157825447"
/db_xref="GeneID:5644965"
/translation="MRNSSKKHLDLPYRLGVGMMILNADNHIFVGKRIDTKLSAWQMP
QGGIVPGETPSIAAMREMLEEIGSDKGYIIAESKCWYSYDVPSLLIPKLWNGNFRGQK
QRWFLIRFTGNNEDININTSNPEFDQWRWASLDELLSIIIPFKRKLYQAVVKEFKSLI
Q"
misc_feature complement(326669..327103)
/locus_tag="A1C_01740"
/note="Diadenosine tetraphosphate (Ap4A) hydrolase is a
member of the Nudix hydrolase superfamily. Members of this
family are well represented in a variety of prokaryotic
and eukaryotic organisms. Phylogenetic analysis reveals
two distinct subgroups where plant...; Region:
Ap4A_hydrolase_plant_like; cd03671"
/db_xref="CDD:72891"
misc_feature complement(order(326702..326707,326711..326713,
326834..326836,326858..326863,326870..326872,
326882..326884,326888..326890,326942..326947,
326954..326956,326999..327004,327011..327013,
327029..327031,327038..327040,327089..327091))
/locus_tag="A1C_01740"
/note="putative active site [active]"
/db_xref="CDD:72891"
misc_feature complement(order(326702..326707,326711..326713,
326834..326836,326858..326863,326870..326872,
326882..326884,326888..326890,326999..327004,
327011..327013,327029..327031,327038..327040,
327089..327091))
/locus_tag="A1C_01740"
/note="Ap4A binding site [chemical binding]; other site"
/db_xref="CDD:72891"
misc_feature complement(326936..327001)
/locus_tag="A1C_01740"
/note="nudix motif; other site"
/db_xref="CDD:72891"
misc_feature complement(order(326942..326947,326954..326956))
/locus_tag="A1C_01740"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72891"
gene complement(327160..328512)
/gene="pleD"
/locus_tag="A1C_01745"
/db_xref="GeneID:5644966"
CDS complement(327160..328512)
/gene="pleD"
/locus_tag="A1C_01745"
/note="involved in swarmer-to-stalked cell differentiation
in Caulobacter crescentus; catalyzes the condensation of
two GTP molecules to form the secondary messenger cyclic
di-GMP (c-di-GMP); upon phosphorylation of domain D1 the
protein dimerizes; presumably this allows the two
GTP-bound GGDEF (diguanylate cyclase) domains to catalyze
the condensation reaction; allosterically inhibited by
c-di-GMP"
/codon_start=1
/transl_table=11
/product="response regulator PleD"
/protein_id="YP_001493168.1"
/db_xref="GI:157825448"
/db_xref="GeneID:5644966"
/translation="MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKE
KIDTVLLDVMMPEMDGFEVCKTIKTNPETTHVPVVMVTALSDVDDRVKGLEAGADEFL
TKPINDTALFVRLKSLSRMKSLIDELKLRNSTNALLGVTNIEMHDTFADKKILLINDD
VIQAKNIKQMLLKITQNVKVISNSDELDIINEYTPDLVIISSTLENEDPLRISVILRG
KEEIRGVVIILQIDEDGMPLVVKGIELGVNDYFVYPIEESELLARIRTQLRRKQYQDN
LHNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANNESIKLYLLMCDIDNFKHVN
DTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERIRV
KIEYMDFHIEDQIEPLQKTISIGVTEYKKAESIESFIERADKAMYEAKTTGRNKVVKL
"
misc_feature complement(327163..328512)
/gene="pleD"
/locus_tag="A1C_01745"
/note="response regulator PleD; Reviewed; Region: pleD;
PRK09581"
/db_xref="CDD:181966"
misc_feature complement(328159..328500)
/gene="pleD"
/locus_tag="A1C_01745"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(328198..328203,328210..328212,
328267..328269,328333..328335,328357..328359,
328486..328491))
/gene="pleD"
/locus_tag="A1C_01745"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(328357..328359)
/gene="pleD"
/locus_tag="A1C_01745"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(328333..328341,328345..328350))
/gene="pleD"
/locus_tag="A1C_01745"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(328195..328203)
/gene="pleD"
/locus_tag="A1C_01745"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(327709..328050)
/gene="pleD"
/locus_tag="A1C_01745"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(327751..327756,327763..327765,
327820..327822,327886..327888,327910..327912,
328036..328041))
/gene="pleD"
/locus_tag="A1C_01745"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(327910..327912)
/gene="pleD"
/locus_tag="A1C_01745"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(327886..327894,327898..327903))
/gene="pleD"
/locus_tag="A1C_01745"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(327748..327756)
/gene="pleD"
/locus_tag="A1C_01745"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(327169..327642)
/gene="pleD"
/locus_tag="A1C_01745"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(327406..327408,327535..327537))
/gene="pleD"
/locus_tag="A1C_01745"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(327403..327414,327418..327420,
327484..327486,327496..327498,327508..327513,
327520..327522))
/gene="pleD"
/locus_tag="A1C_01745"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(327346..327348,327430..327432))
/gene="pleD"
/locus_tag="A1C_01745"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 328588..329154
/locus_tag="A1C_01750"
/db_xref="GeneID:5644967"
CDS 328588..329154
/locus_tag="A1C_01750"
/note="Involved in peptide bond synthesis; alters the
affinity of the ribosome for aminoacyl-tRNA"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_001493169.1"
/db_xref="GI:157825449"
/db_xref="GeneID:5644967"
/translation="MKISANSIRTGNILVCNNDLWVVSKTPEHTQPGKGGAYVQVEMK
NLKTGIKRNDRFSSSDYLEKAELEQKDYQFLYFEGNDLILMDTKHFDQINVPKGILEE
KLPFLTENMIVKVEFYNEKPLNIELPPTVILEISETDPVIKGATATASYKPAVLENGI
KVKVPQYLAIGEKIVVKTDDITYVERAK"
misc_feature 328591..329151
/locus_tag="A1C_01750"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:179058"
misc_feature 328597..328773
/locus_tag="A1C_01750"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 328789..328971
/locus_tag="A1C_01750"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:88435"
misc_feature order(328858..328860,328933..328935,328948..328953)
/locus_tag="A1C_01750"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88435"
misc_feature 328978..329145
/locus_tag="A1C_01750"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:88469"
misc_feature order(329065..329067,329116..329118,329131..329136)
/locus_tag="A1C_01750"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88469"
gene 329164..329910
/locus_tag="A1C_01755"
/db_xref="GeneID:5644968"
CDS 329164..329910
/locus_tag="A1C_01755"
/note="COG0483 Archaeal fructose-1,6-bisphosphatase and
related enzymes of inositol monophosphatase family"
/codon_start=1
/transl_table=11
/product="extragenic suppressor protein SuhB"
/protein_id="YP_001493170.1"
/db_xref="GI:157825450"
/db_xref="GeneID:5644968"
/translation="MQPITNLLIHALRKAVKFLHRDFLELEMLQRNSIRNEEFCNRSY
LRLKTLLCEKLQKHTQYLFFPEDQFDLNNNYESVFLINPIDSTNNFARSIPFFAISVT
YLKRNQEVLTPTSTVIYFPALNEIYYAEKGKGAWIEKNNLNSNYQGLRLRVSDNADLK
NCLAIIEDVNHDDLEAIEVDNIRSFGSPCYGVTLVASGKADLICVSVLNITLYYAFEL
LIKEAGGIIIDASDKFVSSNRYIANKLKKY"
misc_feature 329176..329889
/locus_tag="A1C_01755"
/note="Inositol-monophosphatase-like domains. This family
of phosphatases is dependent on bivalent metal ions such
as Mg++, and many members are inhibited by Li+ (which is
thought to displace a bivalent ion in the active site).
Substrates include fructose-1; Region: IMPase_like;
cd01637"
/db_xref="CDD:30135"
misc_feature order(329293..329295,329359..329364,329407..329424,
329794..329799)
/locus_tag="A1C_01755"
/note="active site"
/db_xref="CDD:30135"
gene 330151..330474
/locus_tag="A1C_01760"
/db_xref="GeneID:5644969"
CDS 330151..330474
/locus_tag="A1C_01760"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493171.1"
/db_xref="GI:157825451"
/db_xref="GeneID:5644969"
/translation="MAHYKEFEFDCDFGGQRAKFKFYIGTPQEGHHPLQFQAKWLSDE
RGGTIPDEIMKAISQLNDLAKKNSVPLPDLCVYALGSAQEAQAIPQEEDEDESENYED
EAEQA"
misc_feature 330160..330405
/locus_tag="A1C_01760"
/note="Domain of unknown function (DUF2610); Region:
DUF2610; pfam11020"
/db_xref="CDD:204583"
gene 330554..331249
/locus_tag="A1C_01765"
/db_xref="GeneID:5645608"
CDS 330554..331249
/locus_tag="A1C_01765"
/EC_number="4.1.1.65"
/note="catalyzes the decarboxylaton of
phospatidyl-L-sering to phosphatidylethanolamine"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_001493172.1"
/db_xref="GI:157825452"
/db_xref="GeneID:5645608"
/translation="MRQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGFIAT
AWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEALPPQELGLGDVEMIRVSIFLNIF
NVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDKGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADF
GRKKIAEFKFERR"
misc_feature 330581..331210
/locus_tag="A1C_01765"
/note="phosphatidylserine decarboxylase; Provisional;
Region: PRK05305"
/db_xref="CDD:180005"
gene 331415..332182
/locus_tag="A1C_01770"
/db_xref="GeneID:5645609"
CDS 331415..332182
/locus_tag="A1C_01770"
/note="COG1183 Phosphatidylserine synthase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--serine
O-phosphatidyltransferase"
/protein_id="YP_001493173.1"
/db_xref="GI:157825453"
/db_xref="GeneID:5645609"
/translation="MLKIRKSIITKPVPLIKLIPNFITLLGLVTGMSSLKFALDSRWE
LAVYCIIVAAIVDGVDGRIARMLNAASPFGAELDSLCDFANFGIAPAYLIYLWSFQQY
EYKVFSSAVMLLFIVCMALRLARFNVGIYQPKQDRTTEYFFTGVPAPCGALLALTPVM
IDFEIGTLLNINTRTHTITINIYLAIIAFLIASRLPTISTKNLSIKPEYLSLAMILIA
IAIINLIIYPWYSLPLIAVIYILSIPICYFFKHRGYW"
misc_feature 331439..332179
/locus_tag="A1C_01770"
/note="Phosphatidylserine synthase [Lipid metabolism];
Region: PssA; COG1183"
/db_xref="CDD:31376"
misc_feature 331484..>331876
/locus_tag="A1C_01770"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 332191..333243
/locus_tag="A1C_01775"
/db_xref="GeneID:5645610"
CDS 332191..333243
/locus_tag="A1C_01775"
/note="COG1566 Multidrug resistance efflux pump"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein A"
/protein_id="YP_001493174.1"
/db_xref="GI:157825454"
/db_xref="GeneID:5645610"
/translation="MPSILQQAIDKYTRHPFTKYVTIIALIIFIYLGYRIYVWANTQS
TDNAYIDADISNVSAEVSGVVTKLFVTDNTKVNKGDLIAEIDDRDYKAKLAALEASIE
ACIKNIEIIEQKTSIGQIRLEQAAEKLKLTKISFDIVSTDFTRVQELNKAKFASSKTL
NDSKNAYQKAKTDYKQAQLDLDISKQHLQLLELEKAVEQEKLKELTENKKVTLRSLQN
TKLIAMVPGIFGNSSLEVGNYIVPGRVLFSIVQDDTMYIQANFKETQIKKFKSGMKVK
IEFDALPKKIIDGKIRNIAPATGSKFSLIPPDNATGNFTKIVQRVPVLIDFESPNANL
VPGMSAMVSIRTDQKT"
misc_feature 332257..333240
/locus_tag="A1C_01775"
/note="Multidrug resistance efflux pump [Defense
mechanisms]; Region: EmrA; COG1566"
/db_xref="CDD:31754"
misc_feature 332356..332496
/locus_tag="A1C_01775"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 332848..333201
/locus_tag="A1C_01775"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 333441..333518
/locus_tag="A1C_01780"
/db_xref="GeneID:5645611"
CDS 333441..333518
/locus_tag="A1C_01780"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493175.1"
/db_xref="GI:157825455"
/db_xref="GeneID:5645611"
/translation="MHNLTTEEYDAYIRAKLIEDAAAIA"
gene complement(333681..333884)
/locus_tag="A1C_01785"
/db_xref="GeneID:5645612"
CDS complement(333681..333884)
/locus_tag="A1C_01785"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493176.1"
/db_xref="GI:157825456"
/db_xref="GeneID:5645612"
/translation="MKINSILKVAIGASSIAQKALNSISDKSCGIIEDKIIKGNYVTR
EEFEKLQTLVKKLKKELTELSGK"
gene complement(333881..334123)
/locus_tag="A1C_01790"
/db_xref="GeneID:5645613"
CDS complement(333881..334123)
/locus_tag="A1C_01790"
/note="COG0271 Stress-induced morphogen (activity
unknown)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493177.1"
/db_xref="GI:157825457"
/db_xref="GeneID:5645613"
/translation="MSRIERIQERLSVLKPHFQEIIDESYKHASHYDGIHSHIKIRIA
AETLYGKSLIISHRTINNLLADEFNSGLHALSIEVI"
misc_feature complement(333884..334111)
/locus_tag="A1C_01790"
/note="Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms]; Region: BolA; COG0271"
/db_xref="CDD:30620"
gene 334178..335395
/locus_tag="A1C_01795"
/db_xref="GeneID:5645614"
CDS 334178..335395
/locus_tag="A1C_01795"
/note="COG1022 Long-chain acyl-CoA synthetases
(AMP-forming)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493178.1"
/db_xref="GI:157825458"
/db_xref="GeneID:5645614"
/translation="MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEH
DKHFIIEALDQIIEDVSKELDIFSQFKKIKKDRILFILNTTDSNLIKNFARKLYLFSQ
LYINEQKPAIYIHCYIASIKFPKVSNNAKEIEKTLNMLLSQNNHYYYREYNSTAHDLE
NIRKSNLQLNLLRQALAKNTMRFAYQPIIDRNTMKVHYYECLLRIPYENGVYISVGPI
IPIAENKGLIFVIDQIVLEMTINKLASNPNLMLAVNISNIGTSDEALWEIAENLLKAH
NVRDRLIIEITETSFNENYDKITLFINKLRKYGCKFALDDFGSGFTSFKQLQSLPIDI
IKIDGKYVRSITSDIQSRYFVERLIKISEDLGIATVAEFVENGEIAKFLIDLKVGGLQ
GNFYSEAKFDRAE"
misc_feature 334709..335374
/locus_tag="A1C_01795"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 335513..336949
/gene="murC"
/locus_tag="A1C_01800"
/db_xref="GeneID:5645117"
CDS 335513..336949
/gene="murC"
/locus_tag="A1C_01800"
/EC_number="6.3.2.8"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_001493179.1"
/db_xref="GI:157825459"
/db_xref="GeneID:5645117"
/translation="MLLLELKKTNQTLETIHFLGIGGVGMSGIAEILHNLGYKVQGSD
LVENYNTKRLESYGIKIFLGHAKQHITNVSYVVISSAINSNNPEIKEALERKIPIIRR
AEMLAELMRLKCSVAVSGSHGKTTTTSLMACLFEAAGLCPTVINGGIINNKSTNAYLG
SSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYKDFETLIGAFKSFITNLPFYG
FAVCCIDHTIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKINIPNV
LGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAE
YNNAVVIDDYAHHPEEIKATLATARNIADKQNGKVIAIFQPHRYSRMQHLFDDFMRCF
NDADMIYITDIYAAGEEPIEGVTGQNLVDKITKNKHHDQANFLAELEDVVGVIIDNAA
SGDMIIIMGAGNISSFANELDERLSSRT"
misc_feature 335531..336946
/gene="murC"
/locus_tag="A1C_01800"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:179018"
misc_feature 335555..335851
/gene="murC"
/locus_tag="A1C_01800"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 335870..336397
/gene="murC"
/locus_tag="A1C_01800"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 336485..336754
/gene="murC"
/locus_tag="A1C_01800"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 336996..337883
/gene="murB"
/locus_tag="A1C_01805"
/db_xref="GeneID:5645118"
CDS 336996..337883
/gene="murB"
/locus_tag="A1C_01805"
/EC_number="1.1.1.158"
/note="catalyzes the reduction of UDP-N-acetylglucosamine
enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_001493180.1"
/db_xref="GI:157825460"
/db_xref="GeneID:5645118"
/translation="MLILPTVKGEYQKDYNLKHLTWFKVGGDAEIFFKPLDSEDLASF
LIQNRQKLPITTFGAGSNIIIRDGGIEGVVIKLGQNFSNIEFIDNHLIVGSSCLNYNL
AKFCQANDISGFEFLVGIPGTIGGGVAMNAGAYGSEFKDIIVRIEAIDFAGNFRTFTN
AESGFKYRGNNLPKDLIILKAVFKVNKGDSENILLRMNEINNTRSLTQPIKERTGGST
FANPEGLKSWELIDKAGLRGYRIGGASMSELHCNFMINNGDATSKDLEDLGDFVRQKV
FEDSGVELKWEIKIIGKYV"
misc_feature 336996..337877
/gene="murB"
/locus_tag="A1C_01805"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK13905"
/db_xref="CDD:184385"
misc_feature 337080..337472
/gene="murB"
/locus_tag="A1C_01805"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 337563..337871
/gene="murB"
/locus_tag="A1C_01805"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 338040..339002
/gene="ddl"
/locus_tag="A1C_01810"
/db_xref="GeneID:5645119"
CDS 338040..339002
/gene="ddl"
/locus_tag="A1C_01810"
/EC_number="6.3.2.4"
/note="D-alanine--D-alanine ligase; DdlA; DdlB;
cytoplasmic; catalyzes the formation of D-alanyl-D-alanine
from two D-alanines in peptidoglycan synthesis; there are
two forms of this enzyme in Escherichia coli"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="YP_001493181.1"
/db_xref="GI:157825461"
/db_xref="GeneID:5645119"
/translation="MQYQTHWIEHSVVKILSTTGKNHIALVAGGMSAEREVSLVSSEG
VQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHGTYGEDGCLPGLLNIMRIPY
THSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNINTDPMKRPYVIKPLTQGS
SIGVEVIFEEDDFNFADYDFPYGDQVVIERYIKGREFQVAVLNSKALGALEIKLIKNR
FYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNCKGPARAEFILEEQTNK
LYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTASFES"
misc_feature 338091..338999
/gene="ddl"
/locus_tag="A1C_01810"
/note="D-alanine--D-alanine ligase; Reviewed; Region: ddl;
PRK01372"
/db_xref="CDD:179288"
misc_feature 338106..338354
/gene="ddl"
/locus_tag="A1C_01810"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature 338412..338981
/gene="ddl"
/locus_tag="A1C_01810"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene 339592..339801
/locus_tag="A1C_01815"
/db_xref="GeneID:5645120"
CDS 339592..339801
/locus_tag="A1C_01815"
/note="COG1589 Cell division septal protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsQ"
/protein_id="YP_001493182.1"
/db_xref="GI:157825462"
/db_xref="GeneID:5645120"
/translation="MNKALVAIRVGDRRWDLNLKGNISIKLPEKEFEEALKYVDALNK
ANKLFNQNYKALDLRDKHKYYIEKY"
misc_feature <339610..339768
/locus_tag="A1C_01815"
/note="Cell division protein FtsQ; Region: FtsQ;
pfam03799"
/db_xref="CDD:202772"
gene 339950..341185
/locus_tag="A1C_01820"
/db_xref="GeneID:5645121"
CDS 339950..341185
/locus_tag="A1C_01820"
/note="COG0849 Actin-like ATPase involved in cell
division"
/codon_start=1
/transl_table=11
/product="cell division protein FtsA"
/protein_id="YP_001493183.1"
/db_xref="GI:157825463"
/db_xref="GeneID:5645121"
/translation="MKEKISNFVTLDFGSSKIAVIAAYISKKGEIKVASQNLHHSKGI
KSGVISDLKNAETSIVSAIYALEKDCGKNIKKVILSLSGADTKSYYINYTIKVNGQTV
TQQDIKKLLQKALLEFKVKNQEIIHYFPLEFTLDNNSVENPIGMYGRELSCELHIIAA
SSNMLSNIVQCFAKCHVEVTNITLAIYASAISCLTNDEKNLGSLIIDMGDKTTSFGIF
FAGKLIYTGHVNVGSFHISSDIAKVFGIDLVTAEKLKILYGNAMIPLFEKDSIINMDD
FQVETHYNLNTAVTIYTLAEVIMARVEEILSMVKAEYDKATKGHVEVFRVVITGGGSQ
LRGLKELSNKIFEKQSRIGKPEIIAGFTEDYNPAMHSATIGMLKIHAIKQQKEFAHIR
LDANSSFFKKAFDWFKENV"
misc_feature 339968..341086
/locus_tag="A1C_01820"
/note="cell division protein FtsA; Region: ftsA;
TIGR01174"
/db_xref="CDD:162236"
misc_feature 339971..340528
/locus_tag="A1C_01820"
/note="Cell division protein FtsA; Region: FtsA;
smart00842"
/db_xref="CDD:197910"
misc_feature 340559..340987
/locus_tag="A1C_01820"
/note="Cell division protein FtsA; Region: FtsA;
pfam14450"
/db_xref="CDD:206616"
gene complement(341116..341310)
/locus_tag="A1C_01825"
/db_xref="GeneID:5645122"
CDS complement(341116..341310)
/locus_tag="A1C_01825"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493184.1"
/db_xref="GI:157825464"
/db_xref="GeneID:5645122"
/translation="MFRTESETRTQLKKAGFQILEMIYDSQGIFPRIAARKNNNRIQT
FSLNQSKAFLKKLLFASSLI"
gene complement(341543..341710)
/locus_tag="A1C_01830"
/db_xref="GeneID:5645123"
CDS complement(341543..341710)
/locus_tag="A1C_01830"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493185.1"
/db_xref="GI:157825465"
/db_xref="GeneID:5645123"
/translation="MRYYVRFAYIRLQQNKGIGIDLDVSSLELAQENANKHYLAHVNL
WQQDAWNLDLH"
gene complement(342230..342556)
/locus_tag="A1C_01835"
/db_xref="GeneID:5645201"
CDS complement(342230..342556)
/locus_tag="A1C_01835"
/note="COG1585 Membrane protein implicated in regulation
of membrane protease activity"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493186.1"
/db_xref="GI:157825466"
/db_xref="GeneID:5645201"
/translation="MINNYLTEIWLIIGIICVVVEFFAVPNIGFLFFGLGALSKTLVV
YNYPLVSLTNQITFFGILSLIWFCILYYPLKKYVYNKTDRTENYSNMIDKMVEVCNST
VSSDTI"
misc_feature complement(<342269..342532)
/locus_tag="A1C_01835"
/note="Membrane protein implicated in regulation of
membrane protease activity [Posttranslational
modification, protein turnover, chaperones / Intracellular
trafficking and secretion]; Region: COG1585"
/db_xref="CDD:31773"
gene complement(342546..343073)
/locus_tag="A1C_01840"
/db_xref="GeneID:5645202"
CDS complement(342546..343073)
/locus_tag="A1C_01840"
/note="COG3474 Cytochrome c2"
/codon_start=1
/transl_table=11
/product="cytochrome c"
/protein_id="YP_001493187.1"
/db_xref="GI:157825467"
/db_xref="GeneID:5645202"
/translation="MSGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSV
AVQASSDNQDTTALEQAPINIPQLMKTANANNGREIAKKCLMCHSLDKDGPNKLGPHL
WDVAGRPKGSIADYKYSPALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRD
IADVILFLKTYVHDK"
misc_feature complement(342549..342959)
/locus_tag="A1C_01840"
/note="Cytochrome c2 [Energy production and conversion];
Region: COG3474"
/db_xref="CDD:33277"
gene 343187..344257
/locus_tag="A1C_01845"
/db_xref="GeneID:5645203"
CDS 343187..344257
/locus_tag="A1C_01845"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493188.1"
/db_xref="GI:157825468"
/db_xref="GeneID:5645203"
/translation="MSDSKKSRARRIFNQLKSYWTSFRQSKIGKILFSNSLSYVVSVA
SIAIAASGLFTPISPIIIAVAVVSGVSVGIKAINETLNVHGLHKLHKENNLLVHNRNA
KSQQDYILSLEPSLKDILKNELYTPQIAGKDCTQDKYELNVNKLKSTGRIFGNNLGGA
ANLAVYIIKGASGNVLDILKATCYGVVTTASLMIDGLTEKEKREIKEIFKLNINEEYK
KQDTPIYENLETLEHYTKNQVLQTLALRKLITDKNYWSMNKDQKIQKFREIRGNFEIK
RNGLEEFFKENKITMDNRKESYVKDIKNVMNPFYDKPSKAEVCSPLTKAMDKDKVNNA
EIKRTKRENLKRMQKRKRNLTI"
gene complement(344266..345132)
/gene="lpxC"
/locus_tag="A1C_01850"
/db_xref="GeneID:5645204"
CDS complement(344266..345132)
/gene="lpxC"
/locus_tag="A1C_01850"
/note="zinc-dependent; catalyzes the deacetylation of
UDP-(3-O-acyl)-N-acetylglucosamine to
UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second
step of lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="YP_001493189.1"
/db_xref="GI:157825469"
/db_xref="GeneID:5645204"
/translation="MQQSTLLKPVSCYGIGVHSGKRTQLTMEPAKENTGIIFISTDIS
SEKNYIEASYFNVSDTLLSTTISNEHKVQISTIEHLMAALWGCSIDNAIIKVDGPEVP
IMDGSSKPFVFMIECAGKKLQNAPKKYLKILKDIKVVHKDCELYCTPSDHMTVDLTID
FSSKAIGRQNLSFRDQESFTKNIADARTFGFIRDVDYLKSKGLAQGASFENAIGIDEQ
DKILNPNGLRYEDEFVRHKLLDLFGDLYTSGTSVVSSIKGYKTSHALNNELLHRIFSD
TTSYKFVTSNEL"
misc_feature complement(344272..345132)
/gene="lpxC"
/locus_tag="A1C_01850"
/note="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed; Region: lpxC; PRK13186"
/db_xref="CDD:183882"
misc_feature complement(344299..345132)
/gene="lpxC"
/locus_tag="A1C_01850"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene complement(345385..346533)
/locus_tag="A1C_01855"
/db_xref="GeneID:5645205"
CDS complement(345385..346533)
/locus_tag="A1C_01855"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493190.1"
/db_xref="GI:157825470"
/db_xref="GeneID:5645205"
/translation="MTLKNDYKTIFCSLLGILIFSCINAINFYNFKIFLLINKNLCGE
QINHINQTKFIGSIIAGFALTQLINKLSNKKIILLSLSLLMICTINLIILNNYTLIKI
NFILINFGTFSYFTSITLDIIESSKEKKYFFLACIMLLWAGGNLMVDLFNPFIKPTNN
TIVICALLYCINILTEFLHYNPTSHKLNLNSKFSSLIKNVELQLLTGFVVAYVTLDIL
WYYEAFALKKELALVNLRLILKYIFLAICFSIVPICYILSKVNKYLANLSLTIILLVC
FMLLPLHGTSKNLNILYIILIGSCLGSIYICNILILIDKFRDYELRTALFSYFSMCSI
GTYAGALSSHVPYGTINGSDFLFSVFAVVGSFVAYHFWYFIKYKLYRF"
gene 346962..349034
/locus_tag="A1C_01860"
/db_xref="GeneID:5645206"
CDS 346962..349034
/locus_tag="A1C_01860"
/note="COG1530 Ribonucleases G and E"
/codon_start=1
/transl_table=11
/product="ribonuclease E"
/protein_id="YP_001493191.1"
/db_xref="GI:157825471"
/db_xref="GeneID:5645206"
/translation="MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIY
LAKVTRIEPSLQAVFIEYGMEKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNI
TVEDDKEKPAVIYDSFVDSEEIDLKTIEDLVESKFQSELNLEAADDIEIIQSGTTESN
IPQYKQYKVQEVIRKTQILLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGLQNGI
SRKISNGEERKRLKDILNKIVSGDKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKI
RKSTIKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVVIQGQEAYEDASRFMQDLLPSEL
AKLKEHKNKIPIFTKFQVEEQLVKLYQPVVTLPSGGYIVINPTEALISIDVNSGKSTS
EKNIEETALKTNLEAAKEVAKQVKLRDLSGLIVVDFIDMSEAKNRKIIERSFKEFLSR
DRARIQTGNISQFGLLEFSRQRLRSSFLETNSAICSHCNGKGVIRASDANAMLILRTI
ENEIFEERIDVINVFTNIVSVLYLLNNKRAEIKFIEEKYNIKLNFYSDPNATSDSYSI
EKVKLLKQNNNNVNPVKPVIQNHSADYTEEEPKTEQLRKNKHKWKTANNSNNVANEVK
DKSLEAAESVEHTVSVVEELKVVESNAGLEEAQVAPKKIKRRYRNKKSNKTCPPNIAE
DTEQNVES"
misc_feature 347067..>347201
/locus_tag="A1C_01860"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(347106..347108,347136..347138,347166..347168,
347172..347174)
/locus_tag="A1C_01860"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature <347451..347573
/locus_tag="A1C_01860"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature 347559..348383
/locus_tag="A1C_01860"
/note="Ribonuclease E/G family; Region: RNase_E_G;
pfam10150"
/db_xref="CDD:150783"
gene 349210..350166
/locus_tag="A1C_01865"
/db_xref="GeneID:5645207"
CDS 349210..350166
/locus_tag="A1C_01865"
/note="COG1612 Uncharacterized protein required for
cytochrome oxidase assembly"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase assembly protein"
/protein_id="YP_001493192.1"
/db_xref="GI:157825472"
/db_xref="GeneID:5645207"
/translation="MVVIGGITRLTGAGLSIVEWRPVTGILPPFSFESWQAEFAKYKA
FPEYNSVNYGMTLSEFKCIYLLEFIHRLLGRMTVLIYIVPLIYFYFKDVIKNCDMLPY
IIALLLFCVQGFMGWYMVKSGLLNSPSVSHFRLAFHLIIAVIIYHILFYQLIKNRCDI
LLIPSQTDLKLPLIFSGIAITVIYVQIFLGALVAGLDAGLIYNSFPLMGDHCIPMEIK
DNFFNLANLHDPVFIQFIHRLGSYSVFLVVVVLVICLLTIEHPKLNKIAYFLMIALLM
QISTGIITLLYSVPIIIASIHQLFAIILLSIIIWCYFLINSS"
misc_feature 349210..350154
/locus_tag="A1C_01865"
/note="Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification, protein
turnover, chaperones]; Region: CtaA; COG1612"
/db_xref="CDD:31800"
misc_feature 349210..350139
/locus_tag="A1C_01865"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; cl15852"
/db_xref="CDD:210252"
gene 350364..351275
/locus_tag="A1C_01870"
/db_xref="GeneID:5645033"
CDS 350364..351275
/locus_tag="A1C_01870"
/note="COG0564 Pseudouridylate synthases, 23S
RNA-specific"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
C"
/protein_id="YP_001493193.1"
/db_xref="GI:157825473"
/db_xref="GeneID:5645033"
/translation="MNIDVNTPISSRLDKYLKRLYPLLTQGVIEKALRQKQITVNAQK
AEASLRVNAGDKIFIKDKFNLPVKSPEKLVFTDAEIKLAQKITIDYLIYEDDNLIAIN
KPAGLATQGGSKINLSIDSALKYLNYKGADFKLVHRLDKETSGLLLIAKNYLSSVKLH
DAFKEKLIVKTYCAITYGKPIKNVGEVRSNIEKSKGSTPKITDIDSENAKLAITYYKL
LKSLDNNLFLIEFTPVTGRMHQLRLHSKLLGCPIVGDNKYGNKEIMPYSKYMFLHSNN
MCLSEKIFGQEIKLEAKLPFYFTIRLT"
misc_feature 350397..351251
/locus_tag="A1C_01870"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 350397..350588
/locus_tag="A1C_01870"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(350397..350399,350433..350438,350442..350447,
350451..350456,350463..350468,350472..350474,
350493..350498,350499..350513,350517..350519)
/locus_tag="A1C_01870"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 350655..351185
/locus_tag="A1C_01870"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(350772..350783,351087..351089)
/locus_tag="A1C_01870"
/note="active site"
/db_xref="CDD:211346"
gene 351424..352617
/locus_tag="A1C_01875"
/db_xref="GeneID:5645034"
CDS 351424..352617
/locus_tag="A1C_01875"
/note="COG1680 Beta-lactamase class C and other penicillin
binding proteins"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 4*"
/protein_id="YP_001493194.1"
/db_xref="GI:157825474"
/db_xref="GeneID:5645034"
/translation="MEVMIRRYFVLLLFLITNSIGCFADIQQRINAAEKEYMSNRFLN
AVFMFADDYKPLFTGAKGIFALNGEQLKANEMMPIASATKPFTAAGILKLQEQELLNI
NDKIYKYLDPDMWGGKVPDWAYKISIHNLLTHSSGIAEYFSFVKLDLNMPQKEIHKKI
LQFVSSKPLEISIGTKFKYSNTNFVILGMIIEKVAKKDLGDFFYDEFFKPLGMKSTSF
ASYSDAARIQKNVVSANYPVRYFLTPNNSNKPIFTPVIAEFLAVPCGDGGIISTPNDL
VKWYRALNEGTILSKKSYKLMTTKYFLAKDTEGRKSYMGYGIFLTDLDSKHLMIHYTG
KALGIQSEAGYVLPDNLYFAILSNTMIKIPEEEKDKIDMKNPLNQLGIIYFRDAIIEA
AIKND"
misc_feature 351487..352578
/locus_tag="A1C_01875"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature 351511..352530
/locus_tag="A1C_01875"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene 352631..353464
/locus_tag="A1C_01880"
/db_xref="GeneID:5645035"
CDS 352631..353464
/locus_tag="A1C_01880"
/note="COG0708 Exonuclease III"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III"
/protein_id="YP_001493195.1"
/db_xref="GI:157825475"
/db_xref="GeneID:5645035"
/translation="MKIVTWNINSLRLRIDLLRKLVYEHQPDIILLQETKVSDSLFPL
EVIKNIGYEHVIYSGQKSYNGVAIISKFPLNNVFSLELYNSDKRHIAAIVNDIEIHNF
YVPAGGDIPDIDANLKFKHKLEYVRLMQEWLTTNRTRNDKIIIVGDLNIAPHEHDVWS
SKQLRNVISHTDIERSLLVELQNSLSFIDSSRYFVPLDEKFYTWWSYRNIDWKKSNRG
RRLDHIWVSNNLKDALFSMHLLSEARDWLQPSDHVPYFVTLDVIPVEAGIQKQMSSSG
S"
misc_feature 352631..353407
/locus_tag="A1C_01880"
/note="Escherichia coli exonuclease III (ExoIII) and
Neisseria meningitides NExo-like subfamily of the ExoIII
family purinic/apyrimidinic (AP) endonucleases; Region:
ExoIII-like_AP-endo; cd09086"
/db_xref="CDD:197320"
misc_feature order(352649..352651,352730..352732,352937..352939,
352946..352948,353072..353074,353078..353080,
353384..353386)
/locus_tag="A1C_01880"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197320"
misc_feature order(352649..352651,352730..352732,352937..352939,
353072..353074,353078..353080,353294..353296,
353381..353386)
/locus_tag="A1C_01880"
/note="putative catalytic site [active]"
/db_xref="CDD:197320"
misc_feature order(352655..352660,352664..352672,352730..352732,
352811..352816,352937..352939,352946..352948,
352952..352954,352982..352984,353072..353074,
353078..353080,353240..353242,353249..353254,
353285..353287,353291..353296,353372..353377,
353384..353386)
/locus_tag="A1C_01880"
/note="active site"
/db_xref="CDD:197320"
misc_feature order(352655..352657,352730..352732,353381..353386)
/locus_tag="A1C_01880"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197320"
misc_feature order(352655..352660,352664..352672,352811..352816,
352937..352939,352946..352948,352952..352954,
352982..352984,353249..353254,353372..353377)
/locus_tag="A1C_01880"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:197320"
misc_feature order(352937..352939,352946..352948,353072..353074,
353078..353080,353240..353242,353285..353287,
353291..353293,353384..353386)
/locus_tag="A1C_01880"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197320"
misc_feature order(352937..352939,353072..353074,353078..353080,
353384..353386)
/locus_tag="A1C_01880"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197320"
gene 353506..354486
/locus_tag="A1C_01885"
/db_xref="GeneID:5645036"
CDS 353506..354486
/locus_tag="A1C_01885"
/note="COG1071 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
alpha subunit"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase e1 component subunit
alpha"
/protein_id="YP_001493196.1"
/db_xref="GI:157825476"
/db_xref="GeneID:5645036"
/translation="MDIKLGKYKPIKEEYLRAFKEVLLVRRFEEKCGQLYGVGEIGGF
CHLYIGQEAGIVAVNMVRQKGDSMITSYRDHAHIILAGTEPKDVLAELMGRATGCSKG
KGGSMHLFDVPRKFYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQV
YEALNMAALWGLPVVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIKGCQLDGMDFE
EMYNGFKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEKYKERDPLVII
RKTILDNKYATEADLKEIEQSVKEIVKEAVEFSENSPLPDESELYTNVYV"
misc_feature 353539..354483
/locus_tag="A1C_01885"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:188297"
misc_feature 353557..354429
/locus_tag="A1C_01885"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:48163"
misc_feature order(353629..353631,353785..353787,353866..353871,
353962..353964,353968..353979,353986..353988,
353998..354000,354010..354012,354055..354066,
354106..354108,354121..354123,354274..354276)
/locus_tag="A1C_01885"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(353719..353724,353866..353868,353872..353874,
353956..353967,354046..354048,354052..354054,
354253..354255)
/locus_tag="A1C_01885"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48163"
misc_feature order(353851..353853,353857..353859,353863..353865,
353878..353880,353887..353892,353899..353904,
353908..353913,353920..353922,353977..353982,
353998..354003,354010..354012)
/locus_tag="A1C_01885"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(354238..354258,354262..354264,354265..354291,
354313..354321)
/locus_tag="A1C_01885"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:48163"
gene 354594..355574
/locus_tag="A1C_01890"
/db_xref="GeneID:5645037"
CDS 354594..355574
/locus_tag="A1C_01890"
/EC_number="1.2.4.1"
/note="catalyzes the oxidative decarboxylation of pyruvate
with concomitant acetylation of a lipoic acid-containing
dihydrolipoamide acyltransferase within the complex. The
pyruvate dehydrogenase complex catalyzes the overall
conversion of pyruvate to acetyl-CoA and CO(2); it
contains multiple copies of three enzymatic components:
pyruvate dehydrogenase (E1), dihydrolipoamide
acetyltransferase (E2) and lipoamide dehydrogenase"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_001493197.1"
/db_xref="GI:157825477"
/db_xref="GeneID:5645037"
/translation="MQITVREALRDAMREEMIRDDKVFVMGEEVAEYQGAYKVTQGLL
EQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHY
MSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYGAEDHKGLMLTA
IRDNNPVVFLENEILYGHSFYVPETIEPIPYGQAKILKEGSSVTIVTFSIQVKLALDA
ANVLHGDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVVVEEGWFFAGVGASIASIVM
KEAFDYLDAPIEIVSGKDVPLPYAINLEKLALPSESDVIEAVKKVCYYSV"
misc_feature 354594..355571
/locus_tag="A1C_01890"
/note="pyruvate dehydrogenase subunit beta; Validated;
Region: PRK09212"
/db_xref="CDD:169719"
misc_feature 354612..355112
/locus_tag="A1C_01890"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(354654..354656,354660..354662,354678..354680,
354744..354746,354753..354755,354759..354776,
354783..354788,354792..354800,354855..354857,
354864..354869,354894..354899,354963..354965,
354972..354974,355017..355022,355083..355088)
/locus_tag="A1C_01890"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(354675..354677,354762..354764,354768..354770,
354846..354848,354855..354857)
/locus_tag="A1C_01890"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(354678..354680,354753..354755,354759..354770,
354852..354857,354861..354863,354876..354878,
354888..354890,354897..354899,354963..354965,
354969..354974,354996..354998,355002..355007,
355011..355013)
/locus_tag="A1C_01890"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 355167..355538
/locus_tag="A1C_01890"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(355762..357591)
/locus_tag="A1C_01895"
/db_xref="GeneID:5645038"
CDS complement(355762..357591)
/locus_tag="A1C_01895"
/note="COG1217 Predicted membrane GTPase involved in
stress response"
/codon_start=1
/transl_table=11
/product="GTP-binding protein TypA"
/protein_id="YP_001493198.1"
/db_xref="GI:157825478"
/db_xref="GeneID:5645038"
/translation="MTPIRNIAIIAHVDHGKTTLVDNMLKQSGTFRANQAVAERAMDS
NDLERERGITILAKCTALMWNDIRINIVDTPGHADFGGEVERILSMVDGVVLLVDASE
GPMPQTKFVLSKALKLNLKPIVVINKIDRDDQRIKEVIEEVFELFVALEANNDQLDFP
IVYASGRAGRASLNFDDKINPLDNLADDLAPLFDLIVTHVPTPAADDKAPFSMLITTR
EYNSFFGRVLTGRVQNGTVKINQNIKVLNRENKVLETGRITKILAFRGLERIAIDEAI
AGDIIAVAGVENANVADTICSPEVTEAVPSLPIDPPTLSMTFSVNDSPLAGSEGTKVT
SSLIGARLMREIESNVALKVTEAAEKNAFQVAGRGELQLGILIETMRREGFELSISRP
EVLFQTDGKGNKQEPMEEIQVDVDDDYVGVVVKSLALRKADMTDMRPSGGGKSRVTFI
GPSRGLIGYHSQFLTETRGTGIMNRIFHGYANYKGAIAGRRNGVLISNGDGAAVAYAL
WNLEERGKMFINPSDKVYRGMIIGEHNRENDLEVNPLKARQLSNVRASGKDEAIRLTP
PMLLTLEQAISYIQDDERVEVTPKSIRLRKALLDPNDRKRAAK"
misc_feature complement(356983..357585)
/locus_tag="A1C_01895"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature complement(355774..357582)
/locus_tag="A1C_01895"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature complement(357538..357561)
/locus_tag="A1C_01895"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature complement(order(357166..357168,357178..357180,
357286..357291,357358..357363,357415..357420,
357514..357519,357526..357528,357535..357540,
357550..357552,357556..357558))
/locus_tag="A1C_01895"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature complement(order(357091..357099,357202..357204,
357208..357213,357535..357552))
/locus_tag="A1C_01895"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature complement(357418..357453)
/locus_tag="A1C_01895"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature complement(357430..357432)
/locus_tag="A1C_01895"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature complement(357364..357375)
/locus_tag="A1C_01895"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature complement(357313..357369)
/locus_tag="A1C_01895"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature complement(357202..357213)
/locus_tag="A1C_01895"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature complement(357091..357099)
/locus_tag="A1C_01895"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature complement(356701..356961)
/locus_tag="A1C_01895"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature complement(356140..356376)
/locus_tag="A1C_01895"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 357791..357955
/locus_tag="A1C_01900"
/db_xref="GeneID:5645039"
CDS 357791..357955
/locus_tag="A1C_01900"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493199.1"
/db_xref="GI:157825479"
/db_xref="GeneID:5645039"
/translation="MGHSHNYIGERLGGLIARNIQNRFFSAYEDRAKEIARLEPKFII
ELMEKLLDSD"
gene 357948..358127
/locus_tag="A1C_01905"
/db_xref="GeneID:5645151"
CDS 357948..358127
/locus_tag="A1C_01905"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493200.1"
/db_xref="GI:157825480"
/db_xref="GeneID:5645151"
/translation="MINLGANNEEQLVSLFKNMILSGHKIAIASFNDYHHAVKYALET
LLGQEDAAKIYIKSA"
gene 358096..358377
/locus_tag="A1C_01910"
/db_xref="GeneID:5645152"
CDS 358096..358377
/locus_tag="A1C_01910"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493201.1"
/db_xref="GI:157825481"
/db_xref="GeneID:5645152"
/translation="MQQKFISNQLDLLIIFKKYKFCTKKEYIRKITNNTGVTNTKNVF
FMDDDIKYVNAAKYYGITEVLVENKGKEHIHKAFNFLYEFNEQHEIYVE"
gene 358789..359295
/locus_tag="A1C_01915"
/db_xref="GeneID:5645153"
CDS 358789..359295
/locus_tag="A1C_01915"
/note="COG2825 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493202.1"
/db_xref="GI:157825482"
/db_xref="GeneID:5645153"
/translation="MITEAQNVPIKEDNFKVRVAVADVQSILEGSIAIKDLRNKIEKL
NNKIQEDIAAKEAEFKPLEEKLLNERSNLSETEFEHKVNEFNAKVSHVRKEIQIKKTK
LEQAHAEAMSIVHETTITIISELAEKYNLNLVIPSAQVLYAKNNLNITSEVTFMLNER
LKEVMINY"
misc_feature 358843..359262
/locus_tag="A1C_01915"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:198003"
gene 359376..360827
/locus_tag="A1C_01920"
/db_xref="GeneID:5645154"
CDS 359376..360827
/locus_tag="A1C_01920"
/EC_number="1.1.1.41"
/note="catalyzes the formation of 2-oxoglutarate from
isocitrate"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase"
/protein_id="YP_001493203.1"
/db_xref="GI:157825483"
/db_xref="GeneID:5645154"
/translation="MAEFTPITIAYGDGIGPEIMEAVLYILRKAEARIRLETIEVGEK
LYKKHYTAGISEESWESIQRTGIILKAPITTPQGGGYKSLNVTIRKTLQLFANIRPSV
SFHPFTRTLHPNLNLTIIRENEEDLYAGIEYRQTHNIYESIKLISHTGCEKIIRYAFE
YAVKNNRKKVTCLSKDNIMKFSDGVFHKVFNEIAKEYPQISNEHYIIDIGTARLSTKP
EIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGQHYAMFEAVHGSAPNIAGKDIA
NPSGLLNAAIMMLVHIGQGDIATLIENAWKKTIEDGVHTADIYNQQNSSKKVGTKEFA
EEVTKRLGKIPTKLPRADYPLIAEKQESNIDYKIDTKEVKKLVGTDIFVNINVSSAHD
IADTVNKLELGNVELKTISSKGLKLWPRDTRFETVSDHWCCRFMNKDGTEIKHLDITR
LLEALSKANIDFIKVENLFEFDGVAGYSLAQGE"
misc_feature 359376..360824
/locus_tag="A1C_01920"
/note="isocitrate dehydrogenase; Validated; Region:
PRK09222"
/db_xref="CDD:181708"
misc_feature 359391..360407
/locus_tag="A1C_01920"
/note="Isocitrate/isopropylmalate dehydrogenase [Amino
acid transport and metabolism]; Region: LeuB; COG0473"
/db_xref="CDD:30821"
gene 360985..361329
/locus_tag="A1C_01925"
/db_xref="GeneID:5645155"
CDS 360985..361329
/locus_tag="A1C_01925"
/note="subunit G of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved
specifically with K+ transport"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
G"
/protein_id="YP_001493204.1"
/db_xref="GI:157825484"
/db_xref="GeneID:5645155"
/translation="MILYYIGILLVMIGLFAIFSGIIGFFRFPDFYTKLHAASVIESF
GVPVCLIGFACIESDIVNSGKLILAALLIFLLNPVATHALGKASLLSMSFLRKQESRK
KFKKTGFPLSLE"
misc_feature 360985..361278
/locus_tag="A1C_01925"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12674"
/db_xref="CDD:183672"
gene 361364..362410
/locus_tag="A1C_01930"
/db_xref="GeneID:5645156"
CDS 361364..362410
/locus_tag="A1C_01930"
/note="subunit B of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
B"
/protein_id="YP_001493205.1"
/db_xref="GI:157825485"
/db_xref="GeneID:5645156"
/translation="MKTALNFDLGNYLLNLIAFLLILISIKIIFAKDLLNSVIATSIF
SLLISVSYLMMDAPDVAMTEAAIGSCLSTCVYLNLLRKLPSDLKNIERTNVIATSLIC
LLFVVILTYIGLELPSYGDDNAPLHIYSSKYYIENTSRDIGIPSLVAAILASYRGYDT
LCETSVILIAGIAVLLVSSQEGVIPWLDHGISGHGMKYRILRSSRVMTNPIIKYITSF
IIPYIILYSIYIQLNGESSPGGGFQAGVIFASSLIAYDLVYGHRKLSRYFPPNVLICI
AVLGVAIYAIVGTISLFFNDNYLNYDSLTNFINDQLLAHHIAIVIVEIGIGLTVAAIM
YLIYNVFNCILDEL"
misc_feature 361370..362392
/locus_tag="A1C_01930"
/note="putative monovalent cation/H+ antiporter subunit B;
Reviewed; Region: PRK12507"
/db_xref="CDD:183562"
misc_feature 361370..361630
/locus_tag="A1C_01930"
/note="Predicted subunit of the Multisubunit Na+/H+
antiporter [Inorganic ion transport and metabolism];
Region: COG1563"
/db_xref="CDD:31751"
misc_feature 361982..362386
/locus_tag="A1C_01930"
/note="Domain of unknown function (DUF4040); Region:
DUF4040; cl00676"
/db_xref="CDD:207161"
gene 362533..363171
/locus_tag="A1C_01935"
/db_xref="GeneID:5645157"
CDS 362533..363171
/locus_tag="A1C_01935"
/codon_start=1
/transl_table=11
/product="Heme exporter protein B"
/protein_id="YP_001493206.1"
/db_xref="GI:157825486"
/db_xref="GeneID:5645157"
/translation="MFLLIKREFIVQNRINNIIKYIVIFCLFCIISTVLINSEKDINK
FGLIFSVICLLISLIGFSAVIFKYDLEDGSLELLLSIVSYEKIILAKFCAIFISSTVG
LLFVLPIIYVFFDQTLLEIIFFFISVWIMLVLSSSLVVLSGSVQCYFRKNANFVGTFV
MPLLMPNIIMTGLILQDNNLQLIFIMIGINLVFLPISFFLSAYLIKNIYNIT"
gene 363248..363706
/locus_tag="A1C_01940"
/db_xref="GeneID:5645110"
CDS 363248..363706
/locus_tag="A1C_01940"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493207.1"
/db_xref="GI:157825487"
/db_xref="GeneID:5645110"
/translation="MWYALRRLIAANPMGFFLWSIITKWYLIISVASLITLYYTVLGL
KKIGFIDYFTETTVEILDTTKAVAQNCTTKLGPNWNYLVSFWNCLSNPVEYKHEEGTG
AKVLENEINKLTPRQADSAADAERPIINPYEELENPNNLNNTQSGSNNNR"
misc_feature 363248..363625
/locus_tag="A1C_01940"
/note="Protein of unknown function (DUF2670); Region:
DUF2670; pfam10875"
/db_xref="CDD:151324"
gene 363728..364261
/locus_tag="A1C_01945"
/db_xref="GeneID:5645111"
CDS 363728..364261
/locus_tag="A1C_01945"
/note="COG0723 Rieske Fe-S protein"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase, iron-sulfur
subunit"
/protein_id="YP_001493208.1"
/db_xref="GI:157825488"
/db_xref="GeneID:5645111"
/translation="MSDTEDNTNKQTTRRDFMVLTASSVAAVGAVCTLWPLMDSLNPS
ADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETD
EARVKAGHDNWLVTIGICTHLGCVPLADQGEYDGWFCPCHGSQYDSSGRVRRGPAPLN
LAVPPYSFISDKKIRIG"
misc_feature 363737..363859
/locus_tag="A1C_01945"
/note="Ubiquitinol-cytochrome C reductase Fe-S subunit TAT
signal; Region: UCR_Fe-S_N; pfam10399"
/db_xref="CDD:150981"
misc_feature 363764..364258
/locus_tag="A1C_01945"
/note="ubiquinol-cytochrome c reductase, iron-sulfur
subunit; Region: Rieske_proteo; TIGR01416"
/db_xref="CDD:188138"
misc_feature 363881..364258
/locus_tag="A1C_01945"
/note="Iron-sulfur protein (ISP) component of the bc(1)
complex family, Rieske domain; The Rieske domain is a
[2Fe-2S] cluster binding domain involved in electron
transfer. The bc(1) complex is a multisubunit enzyme found
in many different organisms including...; Region:
Rieske_cytochrome_bc1; cd03470"
/db_xref="CDD:58540"
misc_feature order(364085..364087,364091..364096,364142..364144,
364151..364153,364157..364159)
/locus_tag="A1C_01945"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58540"
gene 364268..365611
/locus_tag="A1C_01950"
/db_xref="GeneID:5645112"
CDS 364268..365611
/locus_tag="A1C_01950"
/note="COG1290 Cytochrome b subunit of the bc complex"
/codon_start=1
/transl_table=11
/product="cytochrome b"
/protein_id="YP_001493209.1"
/db_xref="GI:157825489"
/db_xref="GeneID:5645112"
/translation="MNEDITPKKPNATRVLSKLAYRGAFEGNTEHGTAGYKSVREDVS
AGLTHKLPIAVEFGKNSIVEWIDYRLPIFSFLKHFSHYQTPKNLSYLWNLGSIAGIAL
VIQIITGVVLAMHYTPHVDHAFDSVERIMRNVNYGWLLRYTHAVGASMFFAAVYLHIA
RGLYYGSYKAPRELIWHIGIIIFLTMMATAFMGYVLPWGQMSYWGATVITNLFSAIPL
IGKSIVTWLWGGFSVDNPTLNRFFSLHYLLPFIMVALVMLHLVALHQHGSNNPKGIDV
KSPKDTIPFHPYYTVKDFVGFGVYFIIFAYFIFYEPNYLGHPDNYVPANPLVTPAHIV
PEWYFLPFYAILRAVPSKLGGVLLMFGSIFVLFLLPWLDISKIRSSNYRPIYRIAFWI
FIADCLLLGYLGRQPAEEPYITISRFAACYYFVHFLVALPLIGRYEKPLPLPEGL"
misc_feature 364307..364444
/locus_tag="A1C_01950"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature 364475..365074
/locus_tag="A1C_01950"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature order(364499..364504,364553..364555,364562..364564,
365045..365047,365069..365071)
/locus_tag="A1C_01950"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature order(364502..364507,364517..364525,364541..364546,
364553..364558,364565..364567,364637..364639,
364682..364684,364691..364696,364703..364708,
364712..364717,364721..364726,364733..364735,
364754..364771,364781..364786,364793..364798,
364805..364807,364814..364819,364847..364849,
364859..364879,364889..364894,364916..364918,
365072..365074)
/locus_tag="A1C_01950"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature order(364505..364510,364514..364516,364523..364525,
364586..364588,364598..364600,364607..364612,
364637..364642,364649..364654,364661..364675,
364679..364687,364694..364696,364778..364780,
365057..365062)
/locus_tag="A1C_01950"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature 364517..365554
/locus_tag="A1C_01950"
/note="cytochrome b; Provisional; Region: CYTB; MTH00156"
/db_xref="CDD:177213"
misc_feature order(364541..364543,364550..364555,364559..364564,
364718..364720,364730..364732,364739..364744,
364748..364750,364790..364795,364802..364807,
364811..364816,365033..365035,365042..365047,
365054..365056,365069..365074)
/locus_tag="A1C_01950"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(364571..364573,364580..364585,364592..364597,
364601..364606,364613..364615,364646..364648,
364688..364690,364697..364702,364709..364711,
364832..364837,364844..364849,364853..364858,
365000..365005,365012..365014)
/locus_tag="A1C_01950"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(364817..364819,364826..364831,364838..364843,
364880..364882,364889..364894,364904..364906,
364988..364990,364997..364999)
/locus_tag="A1C_01950"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature 365081..365524
/locus_tag="A1C_01950"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature order(365081..365089,365093..365119,365126..365134,
365138..365143,365150..365152,365159..365164,
365171..365173,365180..365185,365192..365197,
365201..365203,365219..365221,365228..365233,
365393..365398,365408..365410,365414..365416)
/locus_tag="A1C_01950"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature order(365081..365086,365099..365101,365108..365116,
365120..365122,365132..365134,365141..365146,
365153..365158,365165..365167,365177..365182,
365186..365194,365201..365203,365216..365218,
365222..365227,365231..365245,365249..365257,
365264..365266,365270..365281,365324..365326,
365354..365356,365363..365368,365372..365380,
365384..365386)
/locus_tag="A1C_01950"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature order(365120..365122,365144..365146)
/locus_tag="A1C_01950"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature order(365264..365266,365270..365275,365282..365284,
365291..365296,365342..365344)
/locus_tag="A1C_01950"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene 365813..366568
/locus_tag="A1C_01955"
/db_xref="GeneID:5645113"
CDS 365813..366568
/locus_tag="A1C_01955"
/note="COG2857 Cytochrome c1"
/codon_start=1
/transl_table=11
/product="cytochrome c1, heme protein"
/protein_id="YP_001493210.1"
/db_xref="GI:157825490"
/db_xref="GeneID:5645113"
/translation="MQTKLLISIIILLTSCLSLANEEALHPKKMQWSFDGVFGTVNRA
AAQRGFQVYKEVCSICHGLNNLYYRNLKDIGFSDDEIKEIAKGYTIKDGPNDDGEMFD
RHALPSDRFVPPYPNEQAARAANNGAHPPDLSLIIKARHDGANYIYSLLTGYTEPPAD
FKLMQGAHYNPYFPSEQIAMPPPLRDGQVTYIDGTNASVEQMSHDVAVFLQWAAEPEM
EHRKSMGLKVMMFLVVFTIFFYIAKNRIWSNLK"
misc_feature 365906..366562
/locus_tag="A1C_01955"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene 366881..367054
/locus_tag="A1C_01960"
/db_xref="GeneID:5645114"
CDS 366881..367054
/locus_tag="A1C_01960"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493211.1"
/db_xref="GI:157825491"
/db_xref="GeneID:5645114"
/translation="MITLLAVITGFISSIIPEILKMYKDINDKKHEINILDRQITNNK
LNQSKTCTELPIS"
gene 367381..367872
/locus_tag="A1C_01965"
/db_xref="GeneID:5645115"
CDS 367381..367872
/locus_tag="A1C_01965"
/note="COG0071 Molecular chaperone (small heat shock
protein)"
/codon_start=1
/transl_table=11
/product="heat shock protein"
/protein_id="YP_001493212.1"
/db_xref="GI:157825492"
/db_xref="GeneID:5645115"
/translation="MLKYIPAIGAVILSSNIAIANKNYDSSSAMPLRQVADLIDNHIT
NIDHLFKNRLPFYESNSIKSNLITKDKQYIIIMEVPGFDKSQIKVKVNGNRLFITGNI
EAKNKTDYSDNYMNKNFNYVISLYEDVDQKNISSNLKNGILTIILPRTEIKEQEAREI
PIN"
misc_feature 367465..367869
/locus_tag="A1C_01965"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature 367573..367827
/locus_tag="A1C_01965"
/note="Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins (Hsps).
sHsps are small stress induced proteins with monomeric
masses between 12 -43 kDa, whose common feature is the
Alpha-crystallin domain (ACD). sHsps are generally...;
Region: ACD_sHsps-like; cd06464"
/db_xref="CDD:107221"
misc_feature order(367573..367587,367606..367608,367612..367614,
367618..367623,367741..367743,367801..367806)
/locus_tag="A1C_01965"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107221"
gene complement(368895..369752)
/gene="prfB"
/locus_tag="A1C_01970"
/db_xref="GeneID:5645116"
CDS complement(368895..369752)
/gene="prfB"
/locus_tag="A1C_01970"
/note="recognizes the termination signals UGA and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF2; in some organisms
control of PrfB protein levels is maintained through a +1
ribosomal frameshifting mechanism; this protein is similar
to release factor 1"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_001493213.1"
/db_xref="GI:157825493"
/db_xref="GeneID:5645116"
/translation="MAASENDLETLSQIEQDLKNLSILAAKFETECLFSGEADGNNCF
LEINAGAGGTESHDWASIMMRMYLRFAERLGFKTEIINMLNGEEVGIKSCTIRIIGKR
AYGWFKTEAGVHRLVRISPFNAAGKRMTSFASSWVYPAIDDNIAITIEDKDLRIDTFR
ASGAGGQHVNTTDSAVRITHIPTGTVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKR
TDSVNEQNAAKTDSSWGYQIRSYILHPYQMVKDLRTDYETSDTKGVLDGDLEEFVSAN
LAMNAGGKS"
misc_feature complement(369423..369752)
/gene="prfB"
/locus_tag="A1C_01970"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:202648"
misc_feature complement(368910..369626)
/gene="prfB"
/locus_tag="A1C_01970"
/note="Protein chain release factor B [Translation,
ribosomal structure and biogenesis]; Region: PrfB;
COG1186"
/db_xref="CDD:31379"
misc_feature complement(368994..369332)
/gene="prfB"
/locus_tag="A1C_01970"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 370172..371974
/locus_tag="A1C_01975"
/db_xref="GeneID:5645531"
CDS 370172..371974
/locus_tag="A1C_01975"
/note="binds to the ribosome on the universally-conserved
alpha-sarcin loop"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_001493214.1"
/db_xref="GI:157825494"
/db_xref="GeneID:5645531"
/translation="MKNQKYIRNFSIIAHIDHGKSTLADRLIEHCGGLQAREMRTQVL
DSMDIEKERGITIKAQTVRLVYKAKDGNTYYLNLMDTPGHVDFAYEVSRSLAACEGSL
LVVDSTQGVEAQTLANVYQAIEHDHEIVPVLNKIDLPASEPEQVKQQIEDIIGIDASE
AVLISAKSGIGIDLVLEAIVNKLHPPKESSTDILKALLVDSWYDPYLGVVILVRIIDG
TLRKNMRIKMMATNSVYTVENVGFFTPKKHISDVLYAGEIGFVTASIKQVADCKVGDT
ITDEKKPCEQALPGFKPNLPVVFCGLYPTDSSEFEHLKDSLAKLRLNDASFEYEMESS
SALGVGFRCGFLGLLHLEIIQERLSREFDLDLITTAPSVVYKIHMRYGESLEIHNPAD
LPDLQKIESMEEPWIKATIMVPDEFLGAVLSLCTEKRGVQLDHSYIANRAKIVYKLPL
NEIVYDFYDRLKSCSKGYASFEWQIDVYEPSELVKLGILVNGEVIDALSTIVHRSRAE
QRGKVLCVRLKDLIPRQQIDIAIQASIGSRIIARETIKALRKDVLSKCYGGDISRKRK
LLEKQKAGKKRMRQYGNIEIPQSAFIAALKIGDE"
misc_feature 370172..371971
/locus_tag="A1C_01975"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 370193..370729
/locus_tag="A1C_01975"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 370211..370234
/locus_tag="A1C_01975"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(370214..370216,370220..370222,370232..370237,
370244..370246,370253..370258,370349..370354,
370421..370426,370493..370498,370604..370606,
370616..370618)
/locus_tag="A1C_01975"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(370220..370237,370571..370576,370580..370582,
370664..370672)
/locus_tag="A1C_01975"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 370316..370351
/locus_tag="A1C_01975"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 370337..370339
/locus_tag="A1C_01975"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 370409..370420
/locus_tag="A1C_01975"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 370415..370471
/locus_tag="A1C_01975"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 370571..370582
/locus_tag="A1C_01975"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 370664..370672
/locus_tag="A1C_01975"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 370751..371008
/locus_tag="A1C_01975"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 371381..371617
/locus_tag="A1C_01975"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 371639..371962
/locus_tag="A1C_01975"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 372215..372289
/locus_tag="A1C_t06901"
/db_xref="GeneID:5645532"
tRNA 372215..372289
/locus_tag="A1C_t06901"
/product="tRNA-Asn"
/db_xref="GeneID:5645532"
gene 372474..372656
/locus_tag="A1C_01980"
/db_xref="GeneID:5645533"
CDS 372474..372656
/locus_tag="A1C_01980"
/codon_start=1
/transl_table=11
/product="putative phage-like protein"
/protein_id="YP_001493215.1"
/db_xref="GI:157825495"
/db_xref="GeneID:5645533"
/translation="MPVDTLLFGNFADLIIGQCGVLDVLVDHYALGTSGGIRIKLMQD
TDIAIIHTESFAVAQR"
misc_feature <372474..372650
/locus_tag="A1C_01980"
/note="Phage capsid family; Region: Phage_capsid;
pfam05065"
/db_xref="CDD:147312"
gene complement(372781..372936)
/locus_tag="A1C_01985"
/db_xref="GeneID:5645534"
CDS complement(372781..372936)
/locus_tag="A1C_01985"
/note="COG3093 Plasmid maintenance system antidote
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493216.1"
/db_xref="GI:157825496"
/db_xref="GeneID:5645534"
/translation="MYKEFIIDYEKAQTSLNLARDIDVPPSRIHAIVHGKRTITADIA
LRLRQYF"
misc_feature complement(<372784..>372885)
/locus_tag="A1C_01985"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
gene 373019..373216
/locus_tag="A1C_01990"
/db_xref="GeneID:5645535"
CDS 373019..373216
/locus_tag="A1C_01990"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001493217.1"
/db_xref="GI:157825497"
/db_xref="GeneID:5645535"
/translation="MQEFTYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGE
TINDDLFLIDYTSIYNISAYS"
misc_feature <373022..373141
/locus_tag="A1C_01990"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(373251..374351)
/locus_tag="A1C_01995"
/db_xref="GeneID:5645536"
CDS complement(373251..374351)
/locus_tag="A1C_01995"
/note="COG0772 Bacterial cell division membrane protein"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein RodA"
/protein_id="YP_001493218.1"
/db_xref="GI:157825498"
/db_xref="GeneID:5645536"
/translation="MNKNYLEQLQKLPLTLILLIILICCISFIVLYSAANSHLQPWAY
KQIINFCIFLPLAIIIALLDLRIIFRLSYIFYFCVLALLVAVELFGSTAMGGKRWIDI
GIVKLQPSEPIKIAVVLMLARYFHSLTIDDLRKFHKVIIPIIGVLIPAFLIIREPDLG
TGMIVLIVAAVIFFAAGFRIKYFIIIALAALISLPIAWNMMYDYQKKRVMVFLDPEHD
PRGASYNIIQSKIAIGSGGLFGRGLNHGSQSHLNFLPEHQTDFIFATFAEEFGFIGGI
FLLVLYFALITISLLIAANCREIFSKLMVIGINSILFSHVFINIAMVMGLLPVVGVPL
PFISYGGTMIASILIGFGLVMNAQVHGHTTLN"
misc_feature complement(373272..374258)
/locus_tag="A1C_01995"
/note="rod shape-determining protein RodA; Region:
rodA_shape; TIGR02210"
/db_xref="CDD:211724"
gene complement(374457..376511)
/locus_tag="A1C_02000"
/db_xref="GeneID:5645651"
CDS complement(374457..376511)
/locus_tag="A1C_02000"
/note="COG1770 Protease II"
/codon_start=1
/transl_table=11
/product="protease II"
/protein_id="YP_001493219.1"
/db_xref="GI:157825499"
/db_xref="GeneID:5645651"
/translation="MKPPIANKQNYSFKAHGQTINDYYQWLRDPKWPNVADSKILDYL
KAENKYTENFFSDLQKDKEKIFEELRGRVKLDDESVYIKKKDYYYYHRVVWNKNYPIY
CRKHNSMEAEEEVILDVNLLASNSGFTDVAKIAMSPDQTLISYSVDFTGNEQYNIKIY
NLKEQKYLPDEVQDVAPTVIWHEQLNGFFYITINENQRWDKIMFHRLGEDITQDKLIF
EVKNPLHFISCKKSASHEYIFINSGDHNENEIYVISMQDDSFTPKLVRAAENKIFYDI
EHNGDYFYIKTNYKAKNFHAVKLPINNFENTSWDDIYIKEEQDKYLKSFDVTNNYLIL
NYRDQGLPLIKIKQFNNLQEKIIHFHDESFQANSFSTNFEEDDIRVDYSSLAIPNTTY
SYDFDNNALVILKTQEIPSGFNTKEYKVERIFADNEDVKVPITLFYKKSLFKKDGSNP
LYLMGYGAYGISMPVNFSNMAVTLANRGFIYAVVHIRGGDDLGHDWYESAKFLTKKRT
FEDFIACSRALIKEKYTSNNNIVIMGCSAGGMLIGYVLNEKPEIYRAAVAHVPFVDVL
STMLDERLPLTLLEYNEWGNPKEKEYFEYIKSYSPYDNVKVQDYPAIFITCGISDPRV
GYWEPAKWVAKLRDLKTDNNPLLLKTNMDTGHKGSVGRFDYLKEITDELVFIFKIFDV
KV"
misc_feature complement(374463..376511)
/locus_tag="A1C_02000"
/note="Protease II [Amino acid transport and metabolism];
Region: PtrB; COG1770"
/db_xref="CDD:31956"
misc_feature complement(374463..375116)
/locus_tag="A1C_02000"
/note="Prolyl oligopeptidase family; Region: Peptidase_S9;
pfam00326"
/db_xref="CDD:201156"
gene complement(376543..378075)
/locus_tag="A1C_02005"
/db_xref="GeneID:5645652"
CDS complement(376543..378075)
/locus_tag="A1C_02005"
/note="subunit D of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; contains an oxidoreductase domain; catalyzes the
transfer of electrons from NADH to ubiquinone"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
D"
/protein_id="YP_001493220.1"
/db_xref="GI:157825500"
/db_xref="GeneID:5645652"
/translation="MFIQNTRFTFPITNFELMFDFNPQNQLIALAFLIVTAILNLYTI
SQNRKFETLIGSLYCLSSIICVFAADFISMIISLEFMTVFACIIVFCNQLKIKPARQY
FLTHLFSSGLILIGMTLLIQTTGNIAFTSLTESVNNFELPAIFILAGCVINASIIFVN
GWVVNCYTAASSSGVVYLISFTTKVTLIIILKLFSGLEILKFFGILMIIYGLVFSLIE
KNLKRLICYLTVSQLGFILAAISINSPNIAYLITSFIFIHILYNGLFALYFTYIEDEY
SIKNYQDLQNTQINLILLGGFVVSILIYTSILPINSSYIKDGIANLLETNNIIIFSKI
ATCTVLFGLLMESLYNLSYRDQVDGSRKKINNDNKYLWITRSSRGITPITYLSSCIIT
LSVCLFYPVQISHTANFKLVILAISILLALIFRQIPRISTENINLDLYQYIEKMIYFS
IDKYKYTTDSNEDGEKYLNFKVIWNNISSKIPAWHNQQTAIFIVLFLLIGLILTLCHT
MA"
misc_feature complement(376606..378072)
/locus_tag="A1C_02005"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK06588"
/db_xref="CDD:168619"
misc_feature complement(377107..377868)
/locus_tag="A1C_02005"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene complement(378077..378271)
/locus_tag="A1C_02010"
/db_xref="GeneID:5645653"
CDS complement(378077..378271)
/locus_tag="A1C_02010"
/codon_start=1
/transl_table=11
/product="toxin of toxin-antitoxin system VapC"
/protein_id="YP_001493221.1"
/db_xref="GI:157825501"
/db_xref="GeneID:5645653"
/translation="MKTEEARIYAKIIDNLRKEKITIDTNDMIIDTTAITHCYPLFTL
NVKDFKKVQGIEVLTVSSKD"
misc_feature complement(378095..>378262)
/locus_tag="A1C_02010"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
misc_feature complement(order(378137..378139,378191..378193))
/locus_tag="A1C_02010"
/note="putative active site [active]"
/db_xref="CDD:189022"
gene complement(378813..380276)
/locus_tag="A1C_02015"
/db_xref="GeneID:5645654"
CDS complement(378813..380276)
/locus_tag="A1C_02015"
/note="subunit D of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; contains an oxidoreductase domain; catalyzes the
transfer of electrons from NADH to ubiquinone"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
D"
/protein_id="YP_001493222.1"
/db_xref="GI:157825502"
/db_xref="GeneID:5645654"
/translation="MITQFTTPSLLILSTLLVCALNLTSPYATKKDSFIRNFLLIIIA
IFFFGNILIIDLLFLQGIRAGFEFNIFGNYSIGFHLEPSGLIFLSLIGFLWICAVLYT
PKYLAVNNIEHSSRFLFFFNLTILIGVLIALSSNLFTMFICYELLTISTAFLIGHTRN
KIILSGLYKYIKILMIYATILFLPAVIIIYTKTGNGDFASGSLIENYFSKNQSIILLL
MFIFGIAKTAIFPVHSWLPAAMVAHYPVSSLLHAVIVVKTGLFCVYKILLYIFGLSYL
QTIFAEFNWLIFIPIVSIFYSSLKALGTDNIKKILAYSTMNQLSLALLSAFMLTPKAL
GAAILHLVSHSFTKICLFYSMGSIYSLKKTDQVQNLHGTSKELPLISFVILISSLSII
GIPIFSGFISKFSILLAASEQNQIIVMIVVIASSILSSIYLLKILSSIYKPSLVESSV
TKQLPYSMQISIIICCCAVTLFYFIQILIREFLAYIT"
misc_feature complement(378816..380276)
/locus_tag="A1C_02015"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK06589"
/db_xref="CDD:180632"
misc_feature complement(379152..379877)
/locus_tag="A1C_02015"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 380191..380295
/locus_tag="A1C_02020"
/db_xref="GeneID:5645655"
CDS 380191..380295
/locus_tag="A1C_02020"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
D"
/protein_id="YP_001493223.1"
/db_xref="GI:157825503"
/db_xref="GeneID:5645655"
/translation="MAYGLVKFNAQTSKVDRIKRLGVVNCVIMFFLVT"
gene complement(380497..381597)
/locus_tag="A1C_02025"
/db_xref="GeneID:5645656"
CDS complement(380497..381597)
/locus_tag="A1C_02025"
/note="subunit D of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; contains an oxidoreductase domain; catalyzes the
transfer of electrons from NADH to ubiquinone"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
D"
/protein_id="YP_001493224.1"
/db_xref="GI:157825504"
/db_xref="GeneID:5645656"
/translation="MGGWTSKVGIEYRLNSLNQAIIIYLNLVLLFFLVCCHKITNRTI
LKYINNNRKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKS
LIGAFDYLIMGSISATLILIAIGFLLSITGSLNMYDVAAYLQEHTNSRIITIAIGFFL
TGAILKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKFTYIIIGYETIKT
SITNFIKPIALATLIIAPYFAYRAEGFKNIIIYSCFTQIGYVFLLYVTECGIIILPSL
LLADSINKIALFLIDAYNESYKKNSHKVLTIIIIICSCGLPISPLFFIKINILELLFR
QKLLLDFVLILLSSVGSLFYHYKMVKVTFWKN"
misc_feature complement(380500..381597)
/locus_tag="A1C_02025"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK06591"
/db_xref="CDD:180634"
misc_feature complement(380602..381378)
/locus_tag="A1C_02025"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 381653..381796
/locus_tag="A1C_02030"
/db_xref="GeneID:5645657"
CDS 381653..381796
/locus_tag="A1C_02030"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
C"
/protein_id="YP_001493225.1"
/db_xref="GI:157825505"
/db_xref="GeneID:5645657"
/translation="MLDKMQIVVITRAKVIKRKDIIESKAPNKGNNICMIGKWLAMII
YQN"
gene complement(381780..382115)
/locus_tag="A1C_02035"
/db_xref="GeneID:5645403"
CDS complement(381780..382115)
/locus_tag="A1C_02035"
/note="subunit C of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
C"
/protein_id="YP_001493226.1"
/db_xref="GI:157825506"
/db_xref="GeneID:5645403"
/translation="MSHLIYFLTLILLTSGLFIMLTSRNYIHKIIGLGIFQSSVLVFY
LSIGKIKTGGVPILQDGLTTYNSPLPHVLMLTAIVVGFATLSVALSLIYQIYKHFGTI
SDNEINFDK"
misc_feature complement(381783..382115)
/locus_tag="A1C_02035"
/note="putative monovalent cation/H+ antiporter subunit C;
Reviewed; Region: PRK07375"
/db_xref="CDD:180951"
gene complement(382294..383046)
/locus_tag="A1C_02040"
/db_xref="GeneID:5645404"
CDS complement(382294..383046)
/locus_tag="A1C_02040"
/note="COG3504 Type IV secretory pathway, VirB9
components"
/codon_start=1
/transl_table=11
/product="VirB9 protein"
/protein_id="YP_001493227.1"
/db_xref="GI:157825507"
/db_xref="GeneID:5645404"
/translation="MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFK
FTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAGHRIFIKPMEPDATTNMTLITNK
RTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKY
NFNYYISGNEEIAPVKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDN
PNMVILEQVFPKLAIRKGKKITCVFNQSFKAY"
misc_feature complement(382309..382578)
/locus_tag="A1C_02040"
/note="VirB9/CagX/TrbG, a component of the type IV
secretion system; Region: VirB9_CagX_TrbG; cd06911"
/db_xref="CDD:132874"
misc_feature complement(order(382318..382338,382351..382353,
382513..382530,382543..382563))
/locus_tag="A1C_02040"
/note="VirB7 interaction site; other site"
/db_xref="CDD:132874"
gene complement(383048..383746)
/locus_tag="A1C_02045"
/db_xref="GeneID:5645405"
CDS complement(383048..383746)
/locus_tag="A1C_02045"
/note="COG3736 Type IV secretory pathway, component VirB8"
/codon_start=1
/transl_table=11
/product="VirB8 protein"
/protein_id="YP_001493228.1"
/db_xref="GI:157825508"
/db_xref="GeneID:5645405"
/translation="MDPLTNAIQEYIKSGEYFIDARKWYNFKYILPLSHRSLLILICT
LFTLLLILICININILLPINKKVSYLIKDDAEKHATVTNTKHSTLANPYISVANIMLQ
NYVKQREEYNYDILKEQFTFIKNASTSIVYMQFANFMNIDNSLSPVIRYQKLYRRSIN
VLSINNINDTEAVVTFESLAQNSTGEILENMVWEARIGFIMDSISASTSPDMPFNFTV
TSYKLKLLRNKNQK"
misc_feature complement(383051..383746)
/locus_tag="A1C_02045"
/note="Type IV secretory pathway, component VirB8
[Intracellular trafficking and secretion]; Region: VirB8;
COG3736"
/db_xref="CDD:33531"
gene 384210..384389
/locus_tag="A1C_02050"
/db_xref="GeneID:5645406"
CDS 384210..384389
/locus_tag="A1C_02050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493229.1"
/db_xref="GI:157825509"
/db_xref="GeneID:5645406"
/translation="MLKSLKFLLVLTMLAQLLSCTPSAPYEIKSPCVSADIDDGSSLS
VNPCIRRPVNSVNMA"
misc_feature 384210..384377
/locus_tag="A1C_02050"
/note="Protein of unknown function (DUF2706); Region:
DUF2706; pfam10913"
/db_xref="CDD:151360"
gene 384440..385171
/locus_tag="A1C_02055"
/db_xref="GeneID:5645407"
CDS 384440..385171
/locus_tag="A1C_02055"
/note="COG3736 Type IV secretory pathway, component VirB8"
/codon_start=1
/transl_table=11
/product="VirB8 protein"
/protein_id="YP_001493230.1"
/db_xref="GI:157825510"
/db_xref="GeneID:5645407"
/translation="MNNIFGFFKSSNNSKSGSGDTQNQESIKSANPLKITQNWYEERS
DKLMVQRNLLIILVILLTIFMVVATLVIAFVVKSKQFDPFVIQLNSNTGHASVVEPIS
SPVLTADESLTRYFIKKYITARETYNPVDFTTIARTIIRLFSTSGVYYNYLGYIRNKD
FDPTIKYKEDNTTFLVIKSWSKIAADKYIVRFSVNETSGSQLVYNKIAVVSYAYVPMQ
LTDSELDINPVGFQVNGYRVDDDNS"
misc_feature 384506..385168
/locus_tag="A1C_02055"
/note="Type IV secretory pathway, component VirB8
[Intracellular trafficking and secretion]; Region: VirB8;
COG3736"
/db_xref="CDD:33531"
gene 385158..385634
/locus_tag="A1C_02060"
/db_xref="GeneID:5645408"
CDS 385158..385634
/locus_tag="A1C_02060"
/note="COG3504 Type IV secretory pathway, VirB9
components"
/codon_start=1
/transl_table=11
/product="VirB9 protein precursor"
/protein_id="YP_001493231.1"
/db_xref="GI:157825511"
/db_xref="GeneID:5645408"
/translation="MTIVRFYFLVFVLLSGFTVQRECTLVDDPCNNSSNNYIDDLSIT
KDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITPLANRLFI
KPLEKDIRTNMTIITNKRTYEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF"
misc_feature 385164..>385631
/locus_tag="A1C_02060"
/note="Type IV secretory pathway, VirB9 components
[Intracellular trafficking and secretion]; Region: VirB9;
COG3504"
/db_xref="CDD:33307"
gene 385779..387233
/locus_tag="A1C_02065"
/db_xref="GeneID:5645409"
CDS 385779..387233
/locus_tag="A1C_02065"
/note="COG2948 Type IV secretory pathway, VirB10
components"
/codon_start=1
/transl_table=11
/product="virB10 protein"
/protein_id="YP_001493232.1"
/db_xref="GI:157825512"
/db_xref="GeneID:5645409"
/translation="MAEEQNNNDNNNSGSLSGADAPEVQRELSKVSVGFNKSIAIVVV
ICGIFIYIFYTLFFATTKEEIPETQVPTNIVKPVTDVDDNIPEIPKLPDPPKLETPTA
PPPPPPPVVEVPPVLPPTTPVEGKTDKTLPLPPVSLPSTSGTLVESDAEKKRREAKRK
SAIVLVAGVEPKKTPEQITAEATFKDRGDMSLVLGRGKLIDAVLETAINSDLGGEIRA
IISRDVFSEQDKVILIPKGSKIFGKYATSTSSDSYGRVSVIWDRIDLTNGYTIEFDSP
AVDNLGRPGLQGRVDNKYKEQFANAVLQSGFNIGLAKVLDRLVPPPIDSQAAATNTAT
ATQLLNTTQTIASNTAMDANTRIVTICTNILAAITDKTSTAYTTMTQACTTAQNASSA
NTAEQRLQTLVQAVNTAASSLLTTTSIASTPTQAQQASTQAFADVTNVVQNMITQQQF
KPTTTVNQGTPVRIYVNKDYKFPKAVLLKSKVMQ"
misc_feature 385845..>386051
/locus_tag="A1C_02065"
/note="Bacterial conjugation TrbI-like protein; Region:
TrbI; cl04242"
/db_xref="CDD:194809"
misc_feature <386265..386891
/locus_tag="A1C_02065"
/note="Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion]; Region: VirB10;
COG2948"
/db_xref="CDD:32771"
gene 387230..388234
/locus_tag="A1C_02070"
/db_xref="GeneID:5645559"
CDS 387230..388234
/locus_tag="A1C_02070"
/note="COG0630 Type IV secretory pathway, VirB11
components, and related ATPases involved in archaeal
flagella biosynthesis"
/codon_start=1
/transl_table=11
/product="type IV secretion system ATPase VirB11"
/protein_id="YP_001493233.1"
/db_xref="GI:157825513"
/db_xref="GeneID:5645559"
/translation="MNEEFAALETFLLPFKNLFAEDGINEIMVNKPGEVWVEKKGDIY
SKQIPELDSEHLLSLGRLVAQSTEQMISEEKPLLSATLPNGYRIQIVFPPACEIGQII
YSIRKPSGMTLTLDEYAKMGVFDDTATESLVDEDVVMLNNFLAEKKIKEFIRYAVVSK
KNIIISGGTSTGKTTFTNTALTEIPARERLITVEDAREVVLSSHPNRVHLLASKGGQG
RANVTTQDLIEACLRLRPDRIIVGELRGKEAFSFLRAINTGHPGSISTLHADSPAMAI
EQLKLMVMQADLGMPPEEVKKYILTVVDIVVQLKRGSDGKRYVSEVYYKNNKNAEGMV
"
misc_feature 387230..388225
/locus_tag="A1C_02070"
/note="type IV secretion system ATPase VirB11;
Provisional; Region: PRK13900"
/db_xref="CDD:184381"
misc_feature 387674..388201
/locus_tag="A1C_02070"
/note="Type IV secretory pathway component VirB11, and
related ATPases. The homohexamer, VirB11 is one of eleven
Vir proteins, which are required for T-pilus biogenesis
and virulence in the transfer of T-DNA from the Ti
(tumor-inducing) plasmid of bacterial to...; Region:
VirB11-like_ATPase; cd01130"
/db_xref="CDD:29996"
misc_feature order(387728..387733,387743..387751)
/locus_tag="A1C_02070"
/note="Walker A motif; other site"
/db_xref="CDD:29996"
misc_feature order(387734..387739,387794..387796,387818..387820,
387842..387853,387857..387862,387926..387934,
387938..387940,387977..387979,387989..387991,
387998..388003,388031..388039,388049..388051,
388058..388060,388160..388162)
/locus_tag="A1C_02070"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29996"
misc_feature order(387737..387754,388175..388177)
/locus_tag="A1C_02070"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29996"
misc_feature 387941..387958
/locus_tag="A1C_02070"
/note="Walker B motif; other site"
/db_xref="CDD:29996"
gene 388397..390172
/locus_tag="A1C_02075"
/db_xref="GeneID:5645560"
CDS 388397..390172
/locus_tag="A1C_02075"
/note="COG3505 Type IV secretory pathway, VirD4
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB8"
/protein_id="YP_001493234.1"
/db_xref="GI:157825514"
/db_xref="GeneID:5645560"
/translation="MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGA
LGGDINAINIAYKWAYWLINVWGQLKIADYNYLKLKLLASLLGPAIVVIIFYIKNFAR
IKSLQFFEQPEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGIT
HCYNPIDWVSTKPGQMVDDVQKISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKS
FGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKADKERSGVISTMNSSL
ELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSR
KMPNLKEEPYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYED
AGMNSFLSNATYRITFAANNYETANLISQLVGNKTVEQRSFSKPLFFDLNISTRTQNV
SQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPTFVPTQV
PFDPRANNNEASEETEITTAPENNE"
misc_feature 388400..390169
/locus_tag="A1C_02075"
/note="type IV secretion system component VirD4;
Provisional; Region: PRK13897"
/db_xref="CDD:184380"
misc_feature 388859..389968
/locus_tag="A1C_02075"
/note="The TraG/TraD/VirD4 family are bacterial
conjugation proteins involved in type IV secretion. These
proteins aid the transfer of DNA from the plasmid into the
host bacterial chromosome. They contain an ATP binding
domain. VirD4 is involved in DNA transfer...; Region:
TraG_VirD4; cd01126"
/db_xref="CDD:29992"
misc_feature 388874..388897
/locus_tag="A1C_02075"
/note="Walker A motif; other site"
/db_xref="CDD:29992"
misc_feature order(388880..388897,388946..388948,388952..388957,
389621..389626)
/locus_tag="A1C_02075"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29992"
misc_feature 389609..389623
/locus_tag="A1C_02075"
/note="Walker B motif; other site"
/db_xref="CDD:29992"
gene 390182..391594
/locus_tag="A1C_02080"
/db_xref="GeneID:5645561"
CDS 390182..391594
/locus_tag="A1C_02080"
/note="COG0248 Exopolyphosphatase"
/codon_start=1
/transl_table=11
/product="guanosine pentaphosphate phosphohydrolase"
/protein_id="YP_001493235.1"
/db_xref="GI:157825515"
/db_xref="GeneID:5645561"
/translation="MRSAIIDIGSNALRAVVYESDELGAPEIFNYKFRNYLTNLLNLD
NLDVKHQTYLSLQYLIHVFTKLSVTNIRCVATAILRGHPKADEFKAIIRKRFNIDIEI
ISGEREAYLTAAGLISGISDAFGIVADLGGGSLELAQIGNKKVGKLKSLPLGTKIIAS
SNFGDVGLITKMLEEEFGAAHHPNLYLIGGALRLMSRIYMESINYPLKNLHNFEINRV
EFELYLEKLSQIDKLKLSYYEQKAINYNAVLVIKAMIKVFSPEKIIISNYGLKEGVRF
DSLPSHETEKDIIYERVKRLVKFDRNICNIEKYIKAVQYLLINSDATTLIIIELAIML
AQYNKNIDKTLRANFVSEFILSSDIPFSHRQRLMLGIALTVTYTAKTDMQINKIAKKM
ISKSDYYNSHIIGYYIKIAREIDGPEFQEPSFSIKLKDDKFLQINASNILPKQVFEKV
CERLKDISAARKNISYNFSD"
misc_feature 390182..391591
/locus_tag="A1C_02080"
/note="Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism];
Region: GppA; COG0248"
/db_xref="CDD:30597"
misc_feature 390227..391027
/locus_tag="A1C_02080"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 393376..393597
/locus_tag="A1C_02105"
/db_xref="GeneID:5645562"
CDS 393376..393597
/locus_tag="A1C_02105"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493236.1"
/db_xref="GI:157825516"
/db_xref="GeneID:5645562"
/translation="MSILGMSLNIPVNEIYTAAVCQMVVEVNLNNLNTNFNPQFVDGN
TIEVINYGNITVSNSGTHNIGVLYELIKK"
gene 393606..393824
/locus_tag="A1C_02110"
/db_xref="GeneID:5645563"
CDS 393606..393824
/locus_tag="A1C_02110"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493237.1"
/db_xref="GI:157825517"
/db_xref="GeneID:5645563"
/translation="MVGSGRTDLAINLTIGSMSSVVKGLNITRFDNATNINIILNGSA
VDGNIPTVNDYSALPQVSFMQMGGWDSV"
gene 393836..394366
/locus_tag="A1C_02115"
/db_xref="GeneID:5645564"
CDS 393836..394366
/locus_tag="A1C_02115"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493238.1"
/db_xref="GI:157825518"
/db_xref="GeneID:5645564"
/translation="MNINAPMTLNRTFYTSVFSETINVNDDVIITQPTKASGAGNMNF
NIAVDKSLTLSAPNSIQDGTGAWRVSFTFTGANSVLNIDGTNTTIRWAITNGANGTLN
VNAGVTTATDSTVTPLQKTNITDNTTFNIDSVNSNMNLLNNRTSIAFKGASSELDLIN
TGNADKQFTLYSNLNP"
gene 394596..394814
/locus_tag="A1C_02120"
/db_xref="GeneID:5645565"
CDS 394596..394814
/locus_tag="A1C_02120"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493239.1"
/db_xref="GI:157825519"
/db_xref="GeneID:5645565"
/translation="MDGEVIYNQPGTLNVSGDNPIIGKVNFQNVDDILKVSIGSNQVF
GANIDNINNADNNGSVIISQGGSNIAQL"
gene 394811..394873
/locus_tag="A1C_02125"
/db_xref="GeneID:5645694"
CDS 394811..394873
/locus_tag="A1C_02125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493240.1"
/db_xref="GI:157825520"
/db_xref="GeneID:5645694"
/translation="MTIQAGNVTGTIGTNEKSLK"
gene 395226..395540
/locus_tag="A1C_02130"
/db_xref="GeneID:5645695"
CDS 395226..395540
/locus_tag="A1C_02130"
/codon_start=1
/transl_table=11
/product="protein transport protein sec7 (sec7)"
/protein_id="YP_001493241.1"
/db_xref="GI:157825521"
/db_xref="GeneID:5645695"
/translation="MVGITAIKRMKEEKIKQQQAEAANQASQNTPTMSSGTIPVPPPM
PGSGIPVPPPPPSIPNIVKKEAQDIGKQIPQEGDKHKEGLVKAMEAQRKKIEKQNSGR
GM"
gene 395825..396022
/locus_tag="A1C_02135"
/db_xref="GeneID:5645696"
CDS 395825..396022
/locus_tag="A1C_02135"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001493242.1"
/db_xref="GI:157825522"
/db_xref="GeneID:5645696"
/translation="MQEFAYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGE
TINDDLFLIDYTSIYNISAYS"
misc_feature <395828..395947
/locus_tag="A1C_02135"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene 396033..396242
/locus_tag="A1C_02140"
/db_xref="GeneID:5645697"
CDS 396033..396242
/locus_tag="A1C_02140"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493243.1"
/db_xref="GI:157825523"
/db_xref="GeneID:5645697"
/translation="MNGNVHYEEDGTLAPEGIIGDIDFKGTNGTFNVDEGRAIDGVVP
STGGIGGILNFQGNGTVSKSIGTDA"
gene 396274..396501
/locus_tag="A1C_02145"
/db_xref="GeneID:5645698"
CDS 396274..396501
/locus_tag="A1C_02145"
/codon_start=1
/transl_table=11
/product="cell surface antigen-like protein Sca7"
/protein_id="YP_001493244.1"
/db_xref="GI:157825524"
/db_xref="GeneID:5645698"
/translation="MIQQNVSLANDVFVGGVNFTNGGKLQLSKSLSAKNVDFGAKCGT
LEFNGNDRYIVQCYYSKRANLYIKRFQYLNG"
gene 396501..397385
/locus_tag="A1C_02150"
/db_xref="GeneID:5645699"
CDS 396501..397385
/locus_tag="A1C_02150"
/codon_start=1
/transl_table=11
/product="cell surface antigen Sca3"
/protein_id="YP_001493245.1"
/db_xref="GI:157825525"
/db_xref="GeneID:5645699"
/translation="MGASVGTLKTINIGDANTWQSFLIEVSNANLALITSSNSSINFG
NANSQLTAPIDQTITFANNFKGGGIVILNGNGHNLIIDGIKGVTLGTAGKELAELNIK
GDVTITNNLDIHNSNKLNIQKGAYCPDQSLTFAKIAEINIVEVAGAVSYALDAVNDDF
KLNTGGMKFIHADSVLNLNNSAKAYDHTINLTGPLYSGHDKFGIIKLTTGDKNLIIDN
NGNDDNTLGMEWHRLKGLDFVSTGNDTINLQAGIDVESIVLEIHAITFNKVNANIRFE
DDTIYTATGNIKGDVIDF"
gene complement(397382..397600)
/locus_tag="A1C_02155"
/db_xref="GeneID:5645700"
CDS complement(397382..397600)
/locus_tag="A1C_02155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493246.1"
/db_xref="GI:157825526"
/db_xref="GeneID:5645700"
/translation="MQNKKYSKFSGKNPLTYNDTLTLPAFNIFILVLNLVISHAHSKF
NSPFISPVLITLLSIFTLSAILIKPALP"
gene 398228..398338
/locus_tag="A1C_02160"
/db_xref="GeneID:5645701"
CDS 398228..398338
/locus_tag="A1C_02160"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001493247.1"
/db_xref="GI:157825527"
/db_xref="GeneID:5645701"
/translation="MGSYEKLKENPWLAVLQILMKYINEPNLFDKWQEIS"
gene 398406..398684
/locus_tag="A1C_02165"
/db_xref="GeneID:5645238"
CDS 398406..398684
/locus_tag="A1C_02165"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001493248.1"
/db_xref="GI:157825528"
/db_xref="GeneID:5645238"
/translation="MTQIDQTDKIELENILKSCLNPKVEEEMIGSIAHHWLQEGMEQG
IQIQKAQDMEMVKAEKITLAKKMLSIKEPINKIIDFTGLTKREIEKLK"
gene complement(400901..401062)
/locus_tag="A1C_02180"
/db_xref="GeneID:5645239"
CDS complement(400901..401062)
/locus_tag="A1C_02180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493249.1"
/db_xref="GI:157825529"
/db_xref="GeneID:5645239"
/translation="MIPGSGEFVYNTEVQYKTQASFYSGVISHEAINSHYHYNIADSL
CSLNQLQNT"
gene complement(401064..401297)
/locus_tag="A1C_02185"
/db_xref="GeneID:5645240"
CDS complement(401064..401297)
/locus_tag="A1C_02185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493250.1"
/db_xref="GI:157825530"
/db_xref="GeneID:5645240"
/translation="MRLYKSSETQSPNPLIENYLSSDKTPALRSLSYIVFEELLLEDC
SNIIPNFSFEATRKPNIYLPNNYTKLENLISTN"
gene complement(401496..401744)
/locus_tag="A1C_02190"
/db_xref="GeneID:5645241"
CDS complement(401496..401744)
/locus_tag="A1C_02190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493251.1"
/db_xref="GI:157825531"
/db_xref="GeneID:5645241"
/translation="MFRSFFSSLCGVIGNALDGGIFSSVGRFAGKMLGEYLDQLNHAP
IEYDNIKNFKESFKYVTANYGAAIPLIFGTARVNEKII"
gene 401964..402851
/locus_tag="A1C_02195"
/db_xref="GeneID:5645242"
CDS 401964..402851
/locus_tag="A1C_02195"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493252.1"
/db_xref="GI:157825532"
/db_xref="GeneID:5645242"
/translation="MIFKKSLFIFLLFITSLVKAEIIEVDNLDKIKQDFKDNYNKNYV
PQDLLVVTVLDKFLFKSLVPIGEQIDKDIYLTLTPLVRNINKNPKAIYIDQLILTNDS
YKKELQESDFPNFVNEMSNSKIPIIAVNHGFTGNFNNIPKFEIWFADYLKKNFDIDFS
NSFPNNNYVIFNNLDSFSNTYPVFYKGILTNNNISEAEMMLNFLIYMGFMPKAFIIIS
SNIELLKSMEFQLNSYSSNILFIGYYYNNNNTPKNKDAAYYTKIITDLIPQINKIKRN
NPTLKTNKIKDKNPYDKNQ"
misc_feature 402027..402830
/locus_tag="A1C_02195"
/note="Protein of unknown function (DUF2608); Region:
DUF2608; pfam11019"
/db_xref="CDD:151466"
gene 402835..403680
/locus_tag="A1C_02200"
/db_xref="GeneID:5645243"
CDS 402835..403680
/locus_tag="A1C_02200"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493253.1"
/db_xref="GI:157825533"
/db_xref="GeneID:5645243"
/translation="MIKINKVLLSLLCLVISCVSYGQIIPTYSVDSVTMKNLLPKIDA
DTLVLINIDNTIITPKSKLFRYQDNSYINFTKYLYSLAADNASVNKTIAKLIVQRQMI
LVESKWVDLINKMKQQGATVLGIQEITAPYNLIENYEGWLYTVLYGLNINFTNKVNDK
DVFRFNPSDAGAPIFYLGIIFTGNINKVKTLIEFLKIIPKQPTKIVIFANNKKDLENM
DSYLSMVDIGYYGIEYLGWQMLPGSPDNRIAELQQSTFLNTGQWLEDDVASEMLNIPD
SKLHK"
misc_feature 402904..403653
/locus_tag="A1C_02200"
/note="Protein of unknown function (DUF2608); Region:
DUF2608; pfam11019"
/db_xref="CDD:151466"
gene 403977..404756
/locus_tag="A1C_02205"
/db_xref="GeneID:5645244"
CDS 403977..404756
/locus_tag="A1C_02205"
/note="COG1218 3'-Phosphoadenosine 5'-phosphosulfate
(PAPS) 3'-phosphatase"
/codon_start=1
/transl_table=11
/product="cysQ protein"
/protein_id="YP_001493254.1"
/db_xref="GI:157825534"
/db_xref="GeneID:5645244"
/translation="MNNNLIAALKDLIINTGKVALDIKKAGILTDIKSDGSVVTNADK
EISKIIYQTLRSLTSQIAIVCEEQPLPILSSDTFWLIDPIDGTRSYVDGKSTYTVNIG
LIENGFPTIGLIYHPETAKLYYTDVNGRLKIEQNSKEIFVNHEPKHEELNAVIGFYNS
NKATKEFLSKYSFGQINEIGSSIKLCLIAEGAADIYPQFSQTMEWDIAAGHALIKAGG
GNILDTHGQEITYGKENFANPNFFACGKYWLEKYPACNTLA"
misc_feature 403989..404705
/locus_tag="A1C_02205"
/note="CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate
(PAPS) 3'-phosphatase, is a bacterial member of the
inositol monophosphatase family. It has been proposed that
CysQ helps control intracellular levels of PAPS, which is
an intermediate in cysteine...; Region: CysQ; cd01638"
/db_xref="CDD:30136"
misc_feature order(404103..404105,404172..404177,404220..404237,
404241..404243,404442..404444,404451..404453,
404526..404528,404562..404564,404589..404594)
/locus_tag="A1C_02205"
/note="active site"
/db_xref="CDD:30136"
gene complement(404869..407529)
/locus_tag="A1C_02210"
/db_xref="GeneID:5644692"
CDS complement(404869..407529)
/locus_tag="A1C_02210"
/note="This protein performs the mismatch recognition step
during the DNA repair process"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutS"
/protein_id="YP_001493255.1"
/db_xref="GI:157825535"
/db_xref="GeneID:5644692"
/translation="MNIQEFKQKYNYDVATKMMQQYLDIKFAHLDCLLLFRMGDFYEM
FYDDAILASNVLGIALTKRGKNGEEEIAMCGVPYHALEHYLTKLIEANYKVAICDQLE
TPEDAKNRGGYKAVVTRDVTRIITPGTIIEENLIASAEPNYLASLVIPQNKETASICY
VDLSTSEIFVVNVPEAEILNELARLKPREILVSENLRSSNLADSIFKQLNFRITYQVD
SCFAINKCKKIILDFYKMKDIKGIGEISSSQICVIGSILEYLSLTQKQNIPHLPIPRI
INFHSYMTIDFSTRHNLAIVINSQGSSNGSLLNTINHTVTKQGGRLLYNFLSSPLTNI
AKINHRLNITEFFYSNLEIVQRIRELLKKTSDIERCLTRITMNRSSGCDLLSIKYTLE
AATIIKGVFFDAYGFNLPDFIEKIIKPLAGDAELYHLIDESIRADVPNNLNDGGIIKH
EYHPKVAQLHDLINNRKLHIEKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI
LDPKFIHRQTTVNNVRYTTTELQKLESELVNAKTLVISLEKALYADICSQVIKKAAYL
RMLASSLSVLDVFCNFAYIADEYDYVKPELTDDLSFDIVKGRHPVVEKVLQRESKSFV
YNDCHLSELKRIWLITGPNMAGKSTFLRQNAIIAIIAQIGSFVPAKSAKIGVVDKIFS
RIGAADDLIKGQSTFMAEMLETSAILAQSTKNSLIILDEVGRGTSTYDGVSIAWSVLE
YIHDKLKCRCLFATHYHELTVMNNFLPALQNYTIAIEESGKDILFLHNIISGAADRSY
GIHVAALAGLPASVINRAEQILLKFEKTSTGKGKNILSTESNNLRLFNLEHNQTTIRS
KLEEQFRTIDPDQLSPKAALELIYELKKLA"
misc_feature complement(404872..407505)
/locus_tag="A1C_02210"
/note="DNA mismatch repair protein MutS; Provisional;
Region: PRK05399"
/db_xref="CDD:180056"
misc_feature complement(407128..407484)
/locus_tag="A1C_02210"
/note="MutS domain I; Region: MutS_I; pfam01624"
/db_xref="CDD:144998"
misc_feature complement(406714..407106)
/locus_tag="A1C_02210"
/note="MutS domain II; Region: MutS_II; pfam05188"
/db_xref="CDD:147397"
misc_feature complement(405904..406179)
/locus_tag="A1C_02210"
/note="MutS family domain IV; Region: MutS_IV; pfam05190"
/db_xref="CDD:203196"
misc_feature complement(405070..405723)
/locus_tag="A1C_02210"
/note="MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired and
unpaired bases embedded in duplex DNA and activating endo-
and exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal...; Region: ABC_MutS1;
cd03284"
/db_xref="CDD:73043"
misc_feature complement(405586..405609)
/locus_tag="A1C_02210"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73043"
misc_feature complement(order(405265..405267,405367..405372,
405475..405477,405583..405591,405595..405600))
/locus_tag="A1C_02210"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73043"
misc_feature complement(405475..405486)
/locus_tag="A1C_02210"
/note="Q-loop/lid; other site"
/db_xref="CDD:73043"
misc_feature complement(405421..405462)
/locus_tag="A1C_02210"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73043"
misc_feature complement(405367..405384)
/locus_tag="A1C_02210"
/note="Walker B; other site"
/db_xref="CDD:73043"
misc_feature complement(405349..405360)
/locus_tag="A1C_02210"
/note="D-loop; other site"
/db_xref="CDD:73043"
misc_feature complement(405259..405279)
/locus_tag="A1C_02210"
/note="H-loop/switch region; other site"
/db_xref="CDD:73043"
gene 408062..408226
/locus_tag="A1C_02215"
/db_xref="GeneID:5644693"
CDS 408062..408226
/locus_tag="A1C_02215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493256.1"
/db_xref="GI:157825536"
/db_xref="GeneID:5644693"
/translation="MWVLEKGYKYSKGHIISLLKAIFSTVEFSFENQQVLWLSVLEYE
NYKTYFSDIL"
gene complement(409553..409987)
/locus_tag="A1C_02230"
/db_xref="GeneID:5644694"
CDS complement(409553..409987)
/locus_tag="A1C_02230"
/EC_number="5.3.1.6"
/note="catalyzes the interconversion of ribose 5-phosphate
to ribulose 5-phosphate; enzyme from E. coli shows allose
6-phosphate isomerase activity"
/codon_start=1
/transl_table=11
/product="ribose-5-phosphate isomerase B"
/protein_id="YP_001493257.1"
/db_xref="GI:157825537"
/db_xref="GeneID:5644694"
/translation="MQTYNIVIASDHSGYELKSEIINYLEQKSLKVCDCGTNNTQTVD
YPDYAKKVVDIIIEKSAPIGILISDTGIGMSIAANRSSEIRAALCNNMLTAENAKAHN
DANILILGAKTIDHKIVFDIIDKFLTTKFEGGRHNVRLLKIK"
misc_feature complement(409556..409972)
/locus_tag="A1C_02230"
/note="Ribose/Galactose Isomerase; Region: LacAB_rpiB;
cl00485"
/db_xref="CDD:212226"
gene 410030..410707
/locus_tag="A1C_02235"
/db_xref="GeneID:5644695"
CDS 410030..410707
/locus_tag="A1C_02235"
/note="COG0739 Membrane proteins related to
metalloendopeptidases"
/codon_start=1
/transl_table=11
/product="metalloendopeptidase-like membrane protein"
/protein_id="YP_001493258.1"
/db_xref="GI:157825538"
/db_xref="GeneID:5644695"
/translation="MSDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYK
VGDVTANNNSTALEHDEGLIVQRTMEDDTVSEKVSGILEEPKAKIIECYNDDIEIPIS
RNEYEEEIEQSNFVKPLNGVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNK
QFGNLVIVKLDKDDLEVAYASLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVD
PSKYIEF"
misc_feature 410417..410686
/locus_tag="A1C_02235"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 411429..411554
/locus_tag="A1C_02250"
/db_xref="GeneID:5644696"
CDS 411429..411554
/locus_tag="A1C_02250"
/note="COG2161 Antitoxin of toxin-antitoxin stability
system"
/codon_start=1
/transl_table=11
/product="antitoxin of toxin-antitoxin stability system"
/protein_id="YP_001493259.1"
/db_xref="GI:157825539"
/db_xref="GeneID:5644696"
/translation="MHHLVTNEKSKYINKLIDEVTLYHQPTLIKRNNAVLISEED"
misc_feature <411471..411551
/locus_tag="A1C_02250"
/note="Antitoxin Phd_YefM, type II toxin-antitoxin system;
Region: PhdYeFM_antitox; cl09153"
/db_xref="CDD:208990"
gene 411695..411853
/locus_tag="A1C_02255"
/db_xref="GeneID:5644697"
CDS 411695..411853
/locus_tag="A1C_02255"
/note="COG4115 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="toxin of toxin-antitoxin system"
/protein_id="YP_001493260.1"
/db_xref="GI:157825540"
/db_xref="GeneID:5644697"
/translation="MKKDFKKIIKSNHKELCLQFLDLIAQNPFQTPPPYKKLLGVHLG
IYSRRITT"
misc_feature 411698..>411847
/locus_tag="A1C_02255"
/note="Plasmid stabilisation system protein; Region:
Plasmid_stabil; cl11422"
/db_xref="CDD:212315"
gene 411948..412832
/gene="thyX"
/locus_tag="A1C_02260"
/db_xref="GeneID:5644698"
CDS 411948..412832
/gene="thyX"
/locus_tag="A1C_02260"
/EC_number="2.1.1.148"
/note="flavin dependent thymidylate synthase; ThyX;
thymidylate synthase complementing protein; catalyzes the
formation of dTMP and tetrahydrofolate from dUMP and
methylenetetrahydrofolate; the enzyme from Mycobacterium
tuberculosis forms homotetramers; uses FAD as a cofactor"
/codon_start=1
/transl_table=11
/product="FAD-dependent thymidylate synthase"
/protein_id="YP_001493261.1"
/db_xref="GI:157825541"
/db_xref="GeneID:5644698"
/translation="MHNTTKRVTVPALEEILYEPIKVLDHGFIRVIDYMGDDSAIVQA
ARVSYGKGTKQLNQDKGLINYLLRHYHTTPFEMCDIKFHIKLPIFIARQWVRHRTASV
NEYSARYSILGNEFYLPEPANIASQSVVNKQCRECDSLPKEVAEKVLAILEEDARQCY
VHYKELMNADEDGNMIDENTTGIARELARMNLTLNYYTEWYWKINLHNLLHFLRLRAD
THAQYEIRVYAEKMLEIVKAWVPFTYEAFEEYRLRGANISRKGLCVIKRMINGEQVTH
KSSGMTKREWEELMKIFC"
misc_feature 412008..412712
/gene="thyX"
/locus_tag="A1C_02260"
/note="FAD-dependent thymidylate synthase; Reviewed;
Region: thyX; PRK00847"
/db_xref="CDD:179142"
gene 412988..414322
/gene="tolB"
/locus_tag="A1C_02265"
/db_xref="GeneID:5645460"
CDS 412988..414322
/gene="tolB"
/locus_tag="A1C_02265"
/note="forms dimers; may be involved in cell envelope
integrity; interacts with outer membrane proteins and with
the C-terminal domain of inner membrane protein TolA"
/codon_start=1
/transl_table=11
/product="translocation protein TolB"
/protein_id="YP_001493262.1"
/db_xref="GI:157825542"
/db_xref="GeneID:5645460"
/translation="MRNIIYFILLLLFSFKGYALETINIEHGQAAPTPIAVNKFNIDS
SADYVLGNDVVKVISNDLKLSGVFCPISSASFIEERTGIEYKPLFAAWRQINASLLVN
GEIKKLESGKLKISFILWDTLLEKQLAGEILEVPENLWRRAAHKIADKIYEKITGDAG
YFDTKIVYVSESTSLPKIKRIALMDYDGANNKYLTNGRSLVLTPRFARSADKIFYVSY
ATKRRALVYEKDLKTGKESVVGDFSGISFAPRFSPDGRKAVMSIAKNGSTHIYEIDLA
TKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSDGSDVQRISFGGGSY
TAPSWSPRGDYIAFTKIIRGAEGKTFNIGIMKAYPQDDENRERIITSGYLVESPCWSP
NGRVIMFAKGWPSGAKAPGKNKIFAIDLTGHNEREIITPEDASDPEWSGVLN"
misc_feature 413039..414319
/gene="tolB"
/locus_tag="A1C_02265"
/note="translocation protein TolB; Provisional; Region:
tolB; PRK05137"
/db_xref="CDD:179945"
misc_feature 413051..413353
/gene="tolB"
/locus_tag="A1C_02265"
/note="TolB amino-terminal domain; Region: TolB_N;
pfam04052"
/db_xref="CDD:202869"
misc_feature 413825..413935
/gene="tolB"
/locus_tag="A1C_02265"
/note="WD40-like Beta Propeller Repeat; Region: PD40;
pfam07676"
/db_xref="CDD:203719"
misc_feature 413957..>414034
/gene="tolB"
/locus_tag="A1C_02265"
/note="WD40-like Beta Propeller Repeat; Region: PD40;
pfam07676"
/db_xref="CDD:203719"
gene complement(414458..415339)
/locus_tag="A1C_02270"
/db_xref="GeneID:5645461"
CDS complement(414458..415339)
/locus_tag="A1C_02270"
/note="binds with the catalytic core of RNA polymerase to
produce the holoenzyme; this sigma factor is responsible
for the expression of heat shock promoters"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-32"
/protein_id="YP_001493263.1"
/db_xref="GI:157825543"
/db_xref="GeneID:5645461"
/translation="MTNNINALAISSESGFYNYLQKINNIPSLTQEEEFLLAKSYLEE
NDLQAAHKLVTSHLKLVAKIASGYRTYGIPITELVSEGNIGLMQAVKKFNPELGFRLS
TYAMWWIKAAIQEYILKSWSLVKMGTTAAQKKLFFSLNKVKHKITNLYSRAITTDDFA
KIADELGVSVNEVSEMNTRISGPDLSLNNSINSDDAASGELIELLPETRPTPEAMAIN
KQNFTSKRKLLANAMKILNDRELRILTERKLTDTPTTLDILSNEYNISKERIRQIENT
AFEKIKKFILNHSREVA"
misc_feature complement(414473..415339)
/locus_tag="A1C_02270"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:180635"
misc_feature complement(414977..415183)
/locus_tag="A1C_02270"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(414494..414664)
/locus_tag="A1C_02270"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(414506..414508,414512..414517,
414521..414529,414533..414538,414542..414544,
414572..414577,414599..414601,414629..414631))
/locus_tag="A1C_02270"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 415425..415970
/locus_tag="A1C_02275"
/db_xref="GeneID:5645462"
CDS 415425..415970
/locus_tag="A1C_02275"
/note="involved in the insertion of copper into subunit I
of cytochrome C oxidase"
/codon_start=1
/transl_table=11
/product="cytochrome C oxidase assembly protein"
/protein_id="YP_001493264.1"
/db_xref="GI:157825544"
/db_xref="GeneID:5645462"
/translation="MSKKSNKNLAFSLLGLIMSMVLLSFASVPIYNLFCKVTGYGGTT
AKETVSVYSKVKGTKPIIIEFDANVDKDLPWRFIPRQQRVQIVPGQNTLVFYEMENLS
NNDIIGTSVYNVTPNKAGKYFIKIHCFCFEEQLLKAGEKVLMPVTFYIDKAFELDPEM
QDIKVLTLSYSFFKVRELYTR"
misc_feature 415425..415955
/locus_tag="A1C_02275"
/note="cytochrome C oxidase assembly protein; Provisional;
Region: PRK05089"
/db_xref="CDD:179930"
gene complement(416183..417160)
/locus_tag="A1C_02280"
/db_xref="GeneID:5645463"
CDS complement(416183..417160)
/locus_tag="A1C_02280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493265.1"
/db_xref="GI:157825545"
/db_xref="GeneID:5645463"
/translation="MLFKILYKTIITLALIYFLLIILEYAHQGFINDLSLQKVDLSIH
NSIKEPIYLVSYADGPEYIYRNQNVTTHYAINKGIDFILNYKKKHIPQVFIEKNQKIF
NELAGAGLWIWKPYIILKTMQKAPEGAIIVYLDSAFVIKKHISSLTNLLGDNDILLVH
DRDRKNGSFIKGETFALMDCLTEECRNDDHIWSAVIVVRNTKLSRSFIEKWLKNCEDI
RILSGKDYNIHPNYDEYKWHHSDQSVLSLIYHKNPQSVKVIEYAETAPLLSWFHRKYS
NSSPLKPWYSIYGIDPIIHFNTNGKVLPSTALINTPPIVRLRKWVIEHQ"
gene 417410..418507
/gene="mnmA"
/locus_tag="A1C_02285"
/db_xref="GeneID:5645464"
CDS 417410..418507
/gene="mnmA"
/locus_tag="A1C_02285"
/EC_number="2.1.1.61"
/note="catalyzes a sulfuration reaction to synthesize
2-thiouridine at the U34 position of tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA-specific 2-thiouridylase MnmA"
/protein_id="YP_001493266.1"
/db_xref="GI:157825546"
/db_xref="GeneID:5645464"
/translation="MINLGDKHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYD
HGMAVGKKNACCAGQDIYDAKMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETP
LPCVQCNNSVKFRDLIKTARELGASQLATGHYVRKVSGDNGVELHTGLDPAKDQSYFL
FTTTKEQLEYLSFPLGWFTKDETRKLASKFGLEVAYKPDSQDICFVPDGNYKSVINTI
RPNASESGKIIHINGFALGEHSGIINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVG
PEAALHVQEFIIKDVNWLADEIKDNKKLEVAVKIRSTRPPRLAAISKLGDDKMKIRFL
SAEKAVAPGQACVIYAGERVLGGGWITRDIR"
misc_feature 417437..418489
/gene="mnmA"
/locus_tag="A1C_02285"
/note="tRNA methyl transferase. This family represents
tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
which is involved in the biosynthesis of the modified
nucleoside 5-methylaminomethyl-2-thiouridine present in
the wobble position of some tRNAs; Region: tRNA_Me_trans;
cd01998"
/db_xref="CDD:30185"
misc_feature 417437..418489
/gene="mnmA"
/locus_tag="A1C_02285"
/note="tRNA methyl transferase; Region: tRNA_Me_trans;
pfam03054"
/db_xref="CDD:202518"
misc_feature order(417449..417457,417461..417472,417524..417526,
417530..417532)
/gene="mnmA"
/locus_tag="A1C_02285"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30185"
gene 418585..419976
/locus_tag="A1C_02290"
/db_xref="GeneID:5645465"
CDS 418585..419976
/locus_tag="A1C_02290"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="cationic amino acid transporter-1"
/protein_id="YP_001493267.1"
/db_xref="GI:157825547"
/db_xref="GeneID:5645465"
/translation="MSFLRKKSFESVKEIGSSSGLSKTLGALDLILLGLGAMIGTGVF
VVTGIIAAKYSGPAVMLSYAIAGITCIFVALVYTELAAMLPTSGSIYTYSYVAFGEVF
AWMIGSVIILELGVAAGIVAAGWSGYVQGILAAGGINLPKELTTVPTNGGIINLPAFL
ISVFIGFILYLGTKDSKRLNAILVFIKMVAIFVFILAAAPHFDVTNWSNFMPFGFSNV
LVGASILFLAFTGFGTIATAAEECKNPKRDIMIGIIGSLVLTTIVYVTMAGLVTGIAH
FDQLNNDQPLAYALTINNSKIGSAIVATGAVCGMMTVLMMNIYGTSRIFYAIARDGLL
PKSFAKLHPKYDSPYITIIIFASLSAILGGFCSTELLTQFTSMGALIDYITVTIIVVL
FRVKLPDAQRPFKCPLVFIIVPFILIACAYLLFIQIYDGEFNILMAGRALIYWFITIF
ILYIIRSFFMTKE"
misc_feature 418711..419916
/locus_tag="A1C_02290"
/note="amino acid transporter; Region: 2A0306; TIGR00909"
/db_xref="CDD:129987"
misc_feature 418744..419772
/locus_tag="A1C_02290"
/note="Spore germination protein; Region: Spore_permease;
cl15802"
/db_xref="CDD:210202"
gene 420129..421376
/gene="hisS"
/locus_tag="A1C_02295"
/db_xref="GeneID:5645466"
CDS 420129..421376
/gene="hisS"
/locus_tag="A1C_02295"
/EC_number="6.1.1.21"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_001493268.1"
/db_xref="GI:157825548"
/db_xref="GeneID:5645466"
/translation="MTEKLQPLRGIKDLLPDDYKVHDYIISKARDVGVLYGYKQMSTP
ILEYTKVFNRSMGESSDVISKEIYSFLDKSNESVALRPEFTAGIIRSFISNGLQHKLP
LKLFSTGPVFRYDRPQAGRQRQFHQLNYEYIGAKGAITDAETLKLAIDILKALAIEQD
TLLELNSLGCSESRSAYKQKLVEYLSDFKDQLSEESKIRMIKNPMRILDSKSEIDQKI
VAYAPILSEYYTDESKEYFDELIKYLDILGVKYSINPRLVRGLDYYCHTAFEFTTNKL
GSQSTILAGGRYDGLSRIMGNNDDVPAIGFAAGIERIALMREYDISEVKPVFVLPIGD
NNITYALEIVDKLRAQNIATIVEPLGKIAKRMQRVLNENAKFIIFIGDEEQENNSIKL
KDLEKQEEYIVDFAKAFELLKKY"
misc_feature 420138..421370
/gene="hisS"
/locus_tag="A1C_02295"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:178812"
misc_feature 420180..421082
/gene="hisS"
/locus_tag="A1C_02295"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(420195..420197,420231..420233,420246..420266,
420336..420341,420375..420377,420381..420383,
420396..420401,420408..420413,420495..420500,
420519..420521,420543..420545,420555..420557,
420564..420566,420984..420986,421041..421046)
/gene="hisS"
/locus_tag="A1C_02295"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 420240..420266
/gene="hisS"
/locus_tag="A1C_02295"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(420375..420377,420381..420383,420465..420467,
420471..420473,420492..420494,420501..420503,
420507..420509,420519..420521,420903..420905,
420909..420911,420915..420920,420969..420971,
420984..420986,421044..421046,421053..421055,
421062..421064)
/gene="hisS"
/locus_tag="A1C_02295"
/note="active site"
/db_xref="CDD:73226"
misc_feature 420462..420476
/gene="hisS"
/locus_tag="A1C_02295"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(421041..421055,421062..421064)
/gene="hisS"
/locus_tag="A1C_02295"
/note="motif 3; other site"
/db_xref="CDD:73226"
misc_feature 421101..421367
/gene="hisS"
/locus_tag="A1C_02295"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:29799"
misc_feature order(421122..421127,421227..421229,421245..421247,
421269..421271,421299..421301,421305..421307)
/gene="hisS"
/locus_tag="A1C_02295"
/note="anticodon binding site; other site"
/db_xref="CDD:29799"
gene 421440..421802
/locus_tag="A1C_02300"
/db_xref="GeneID:5645601"
CDS 421440..421802
/locus_tag="A1C_02300"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001493269.1"
/db_xref="GI:157825549"
/db_xref="GeneID:5645601"
/translation="MIIINDLAMSYGTRRLFTDVNLYIKNNKRYGLVGANGAGKTTFF
KVLTKEGEPAFGDINIPKNSKVGCLKQDQFLYENTKIIDTVIAVNNELWKALQEKEAI
LKRQECSDEDWYKPGELE"
misc_feature 421443..>421652
/locus_tag="A1C_02300"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene 421888..422103
/locus_tag="A1C_02305"
/db_xref="GeneID:5645602"
CDS 421888..422103
/locus_tag="A1C_02305"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001493270.1"
/db_xref="GI:157825550"
/db_xref="GeneID:5645602"
/translation="MNRFLRCHSIIDWLKKQSEKATENTIRNTLGQVLFRSDEVNKNI
LNLSGVECTRLLLAKMMLEKSNILVLK"
misc_feature <421945..>422097
/locus_tag="A1C_02305"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 422014..422025
/locus_tag="A1C_02305"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 422026..422055
/locus_tag="A1C_02305"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 422086..422097
/locus_tag="A1C_02305"
/note="Walker B; other site"
/db_xref="CDD:72971"
gene 423131..423856
/locus_tag="A1C_02310"
/db_xref="GeneID:5645603"
CDS 423131..423856
/locus_tag="A1C_02310"
/note="COG0811 Biopolymer transport proteins"
/codon_start=1
/transl_table=11
/product="TolQ protein"
/protein_id="YP_001493271.1"
/db_xref="GI:157825551"
/db_xref="GeneID:5645603"
/translation="MSADTNISDSLEIVTQDHLSLFALINSSDIIGKSVMLMLLITSI
WSWAIILDKIFKLAQVQRRMKDFENVFWSGGVLEQLYDSIKRSVNNPLALIFVSAMDE
CKSLSTKGLSDALKNNHKERITGAMYLAQNREVEKLEKNLSFLATVGSSAPFVGLFGT
VWGIMHSFQSIATSKNTSLAVVAPGIAEALLATAIGLFAAIPAVIFYNYLISRITLIN
NKIEDFSSELNSILSKAIDQEKI"
misc_feature 423188..423832
/locus_tag="A1C_02310"
/note="TolQ protein; Region: tolQ; TIGR02796"
/db_xref="CDD:131843"
gene 423856..424287
/locus_tag="A1C_02315"
/db_xref="GeneID:5645604"
CDS 423856..424287
/locus_tag="A1C_02315"
/note="COG0848 Biopolymer transport protein"
/codon_start=1
/transl_table=11
/product="TolR protein"
/protein_id="YP_001493272.1"
/db_xref="GI:157825552"
/db_xref="GeneID:5645604"
/translation="MAMKLAGTNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLV
SGVNVDLPETNSSPISGQDEPLVVTISNKGEIYLLETPIERTHLTDKLSNITKEKKDA
RIFVRGDRNVSYGQVVEIVAKIHAAGFSRVALISNIKNNEK"
misc_feature 423868..424278
/locus_tag="A1C_02315"
/note="Biopolymer transport protein [Intracellular
trafficking and secretion]; Region: ExbD; COG0848"
/db_xref="CDD:31189"
gene 424277..425257
/locus_tag="A1C_02320"
/db_xref="GeneID:5645605"
CDS 424277..425257
/locus_tag="A1C_02320"
/codon_start=1
/transl_table=11
/product="periplasmic protein TonB"
/protein_id="YP_001493273.1"
/db_xref="GI:157825553"
/db_xref="GeneID:5645605"
/translation="MKSNQNRDNFTVFLSFSIVLHLLLLYCLLFGMPSLFEKLSEEKT
ITFEMLSVSDRPNIITQTKQKEAPIENEDATKSEQRKPKEEPQDSPKAEKAKEPDAKT
IEEKPKIEEKKPIEEPKHEEAKEALLEKKDEVKEEKPKEEEKKQTYEKKKTEEHKEEV
VVNKLEETAKEVKKKEPKTDELDSLLKNLEQSSEGDNVKSNKHKRSKKADNAKEAKGV
DTDGLPLSESETSLIKRQIERHWSNVPAGVRGNNKVKVIISITLDKAGNVEHAKVKEK
ICPNITASVCEALADNAIRAVWQASPIENLDPARFNHWKEINVSFDPSKL"
gene complement(425757..426134)
/locus_tag="A1C_02325"
/db_xref="GeneID:5645606"
CDS complement(425757..426134)
/locus_tag="A1C_02325"
/note="COG1266 Predicted metal-dependent membrane
protease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493274.1"
/db_xref="GI:157825554"
/db_xref="GeneID:5645606"
/translation="MTIFSMYPNFDKIIPALIIFSVSDLYILEKQEHTNAIKYTSRSL
LLCIVIIMVLSLISSYALFEPKISSILTILAINNFFFVCIAEEVFFQEFLQRTLQNLL
RKPQILAVIIASLIFRSYIFNAD"
misc_feature complement(<425784..425933)
/locus_tag="A1C_02325"
/note="CAAX protease self-immunity; Region: Abi; cl00558"
/db_xref="CDD:241946"
gene 426823..427317
/locus_tag="A1C_02330"
/db_xref="GeneID:5645607"
CDS 426823..427317
/locus_tag="A1C_02330"
/note="COG0317 Guanosine polyphosphate
pyrophosphohydrolases/synthetases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493275.1"
/db_xref="GI:157825555"
/db_xref="GeneID:5645607"
/translation="MVAEFVAKEAPKLFTFRMLQAALLHDTIEDTELTEEMISNIFDE
EVAMHVEGLTRIKACGKISSAKSLILLIKQKRYDTALIKLFDRIHNLQTLEAKSPEKA
HKIIKETLKSFLVLSEILEIPSVSELIYTECYKNNLKFNINSTLNKIINFDSFPFSQN
KLLP"
misc_feature 426874..>427314
/locus_tag="A1C_02330"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature <426874..427170
/locus_tag="A1C_02330"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
gene complement(427268..428641)
/locus_tag="A1C_02335"
/db_xref="GeneID:5645216"
CDS complement(427268..428641)
/locus_tag="A1C_02335"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter"
/protein_id="YP_001493276.1"
/db_xref="GI:157825556"
/db_xref="GeneID:5645216"
/translation="MTFNQKSVAYLESELYMSVMLGYEKEQRSLNKEQKQAVGLLSIG
TFLEYFDLMLYVHMAVLLNNLFFPEYDQFTFSLLTAFSFCSTYLLRPIGALMFGYIGD
HFGRKIVVVLTTLLMAITCVIIGSMPTYAQIGITASWTLTICRIIQGMSATAEARGAE
LYLTENSSPPIQYPLVAIITVFSAVGTTVALGIASIFTNHNIYQHEPSWRIAFFVGAT
IAFVGTIARTSLKEAEAFSNKKNKLKLRLQENNITLEEIDKDIIDQQVPNATSIWYFF
IQCARPPCFYFVYIYCADILKREFGFTPYQIINQNFWVSIIDLLGIIGLAFLSYKIHP
LKILKVKLYLFFTSLIFFPIMLNYNPTPLYIFIFQCLAALFVFDHVPAAPIFYKYFPV
FKRFTYTSMLSAIAKLFTYIITSFGLVYLTNYLGYWGLFLIFIPVGTAFFMGVTYFEK
MEKNQNL"
misc_feature complement(427298..428530)
/locus_tag="A1C_02335"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(427337..428512)
/locus_tag="A1C_02335"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature complement(order(427409..427411,427421..427426,
427433..427438,427445..427450,427481..427483,
427490..427495,427511..427513,427520..427525,
427532..427534,427676..427678,427688..427690,
427697..427699,427709..427711,427721..427723,
427763..427765,427772..427777,427784..427789,
427802..427804,428081..428083,428099..428104,
428111..428116,428150..428152,428159..428164,
428171..428176,428183..428188,428348..428353,
428357..428362,428372..428374,428381..428386,
428393..428395,428462..428467,428471..428479,
428486..428488))
/locus_tag="A1C_02335"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(428725..430260)
/locus_tag="A1C_02340"
/db_xref="GeneID:5645217"
CDS complement(428725..430260)
/locus_tag="A1C_02340"
/note="COG0845 Membrane-fusion protein"
/codon_start=1
/transl_table=11
/product="alkaline protease secretion protein AprE"
/protein_id="YP_001493277.1"
/db_xref="GI:157825557"
/db_xref="GeneID:5645217"
/translation="MQDLKHNKPQITPEQLKQLLSLREDALNLKGHNSKRMTLINTTL
KKTSHAIEFLLVKLDRFVNFITKKTDKDRNNVAQAARSPILFGIYVIIFLVLIGGLWS
ALAPLDSGAVAVGIVIPSTNKKTIQHNEGGIINAIYVKQGDKVKEGDKLIELEETRIK
SEHENVLGQYRNFLATENRLIAERDHLEQIEFSDFLMHDINLPEVAKIIHTQENLFRS
RKEVYNSEKDALYQNIAQLEKKIEGLEAKKVAALKTAEVYQDRLKALRTLKEKGFVQK
AALLDQEAKVAASKSDVATTEAEIAGIRHAITETQIKIINQQNKYTERTLTELREAQV
QTASLKEKYNSLTDSLNRVIIRSPVDGIVNNLKYHTIGGVISHGQPIMEISPINDPLI
IEAKVSQKNIDSVHEGLVAKIRFSAFKSRTTPTFTGKVVSISPDIVQDERQHPGQQQD
NYYVARIEIDMDAFDKVAKVKNLELHPGMQAEVQIVTGTRTLLRYLLDPITDTAFKAF
REK"
misc_feature complement(428728..430020)
/locus_tag="A1C_02340"
/note="type I secretion membrane fusion protein, HlyD
family; Region: type_I_hlyD; TIGR01843"
/db_xref="CDD:130902"
misc_feature complement(<429772..429867)
/locus_tag="A1C_02340"
/note="Biotinyl_lipoyl_domains are present in
biotin-dependent carboxylases/decarboxylases, the
dihydrolipoyl acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine cleavage
system (GCS). These domains transport CO2, acyl; Region:
Biotinyl_lipoyl_domains; cl11404"
/db_xref="CDD:213122"
misc_feature complement(428827..429201)
/locus_tag="A1C_02340"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(430457..432235)
/locus_tag="A1C_02345"
/db_xref="GeneID:5645218"
CDS complement(430457..432235)
/locus_tag="A1C_02345"
/note="COG4618 ABC-type protease/lipase transport system,
ATPase and permease components"
/codon_start=1
/transl_table=11
/product="alkaline protease secretion ATP-binding protein
AprD"
/protein_id="YP_001493278.1"
/db_xref="GI:157825558"
/db_xref="GeneID:5645218"
/translation="MIIYNITNMDNKNNNLNKKNPLVIALGECRTAFWIVFWFAFVIN
LLMLITPLYSLQVLDRVLGSGNLQTLLFLSIIIAYIYFVYGLLQIARSFTLIKVGEWL
DRIVAPVIFASSISAAATRANMGSSQLLRDFQAVKTFLTSTGINTLFDAPWSIIYIAV
IFSIHPYIGLITVFGAIIIVSTAFFNAAATNKTLGEATEFSIKGMIQADIANRNAEAI
EAMGMMKNVTKNWHKFNILALDKQSVASYRNGVISNFSRFIRNIMQMSVTGVGAYIVV
KSHSADMTPGNMIMSSIIVGRALAPFDNAIELWKSMSGAIKSYKNINNLFNTYASRDE
AMPIPHVEGHLTVENIYYAHPIPKHLPQPPVPKYILKGVSFAIHPGEVLAIIGPSATG
KSTLAKIIVGVWKESSGSVRLDNAEIYRWNREDFGKHVGYLPQGIELFSGSIKQNIAR
MAEDADPQKVIEAAKIAGAHEMILRFPDGYDSDIGPAGSNLSGGQRQRIGLARAFYGN
PKLIILDEPNANLDEAGEVALASALKQAKLKGIAVLVISHRPSVLSIVDKILILQDGA
VAVYGTGEEIQKHFKTLKSGTIHINN"
misc_feature complement(430496..432160)
/locus_tag="A1C_02345"
/note="type I secretion system ABC transporter, PrtD
family; Region: type_I_sec_PrtD; TIGR01842"
/db_xref="CDD:200134"
misc_feature complement(430535..431203)
/locus_tag="A1C_02345"
/note="This family represents the ABC component of the
protease secretion system PrtD, a 60-kDa integral membrane
protein sharing 37% identity with HlyB, the ABC component
of the alpha-hemolysin secretion pathway, in the
C-terminal domain. They export...; Region:
ABCC_Protease_Secretion; cd03246"
/db_xref="CDD:73005"
misc_feature complement(431054..431077)
/locus_tag="A1C_02345"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73005"
misc_feature complement(order(430592..430594,430688..430693,
430931..430933,431051..431059,431063..431068))
/locus_tag="A1C_02345"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73005"
misc_feature complement(430931..430942)
/locus_tag="A1C_02345"
/note="Q-loop/lid; other site"
/db_xref="CDD:73005"
misc_feature complement(430736..430765)
/locus_tag="A1C_02345"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73005"
misc_feature complement(430688..430705)
/locus_tag="A1C_02345"
/note="Walker B; other site"
/db_xref="CDD:73005"
misc_feature complement(430670..430681)
/locus_tag="A1C_02345"
/note="D-loop; other site"
/db_xref="CDD:73005"
misc_feature complement(430586..430606)
/locus_tag="A1C_02345"
/note="H-loop/switch region; other site"
/db_xref="CDD:73005"
gene complement(432222..433238)
/locus_tag="A1C_02350"
/db_xref="GeneID:5645219"
CDS complement(432222..433238)
/locus_tag="A1C_02350"
/EC_number="1.2.1.11"
/note="catalyzes the formation of 4-aspartyl phosphate
from aspartate 4-semialdehyde"
/codon_start=1
/transl_table=11
/product="aspartate-semialdehyde dehydrogenase"
/protein_id="YP_001493279.1"
/db_xref="GI:157825559"
/db_xref="GeneID:5645219"
/translation="MIKKYNIAVIGATGNVGRETLNILAERNCPINKIHAIASDNSIG
RKISYGEKILQISSLTNLNFDDIDIAFFCAGSKVSKKFIPQATSSNCVVIDKSSLFRI
DDQVPLIVPEVNLSTLKDFTAKNIIANPNCIAIPLAVVLKPLDNEIKIKRVVISTYQS
VSGAGKAGMDELYEQTKSKYVFGENHPKKFPKQIAFNLFPHIGDLNKDGYTSEEAKIA
FELNKIIGNHFKASVTSVRVPVFIGHSISVNIEFNNKMDANIAEEILQEADGIVTISN
NNDIAYISPVEVVGEDAVYVSRIRNDVSKPNTINLWITCDNLRKGAALNSVQIAEALI
NDYL"
misc_feature complement(432237..433229)
/locus_tag="A1C_02350"
/note="aspartate-semialdehyde dehydrogenase; Provisional;
Region: PRK14874"
/db_xref="CDD:184874"
misc_feature complement(432879..433223)
/locus_tag="A1C_02350"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:197927"
misc_feature complement(432279..432818)
/locus_tag="A1C_02350"
/note="Semialdehyde dehydrogenase, dimerisation domain;
Region: Semialdhyde_dhC; pfam02774"
/db_xref="CDD:202385"
gene complement(433231..433593)
/locus_tag="A1C_02355"
/db_xref="GeneID:5645220"
CDS complement(433231..433593)
/locus_tag="A1C_02355"
/note="COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase
and other HIT family hydrolases"
/codon_start=1
/transl_table=11
/product="protein kinase C inhibitor 1"
/protein_id="YP_001493280.1"
/db_xref="GI:157825560"
/db_xref="GeneID:5645220"
/translation="MYNKENVFAKIINKNLPAEIIYEDEQMLAFKDIAPVAPVHIIVI
PKNEYIDYADFISKAQIDEIKHFFAKIADIANEVGLDKDGYRLITNKGEKSGQTVLHF
HFHIIGGEKLIGLINKND"
misc_feature complement(433267..433581)
/locus_tag="A1C_02355"
/note="HIT family: HIT (Histidine triad) proteins, named
for a motif related to the sequence HxHxH/Qxx (x, a
hydrophobic amino acid), are a superfamily of nucleotide
hydrolases and transferases, which act on the
alpha-phosphate of ribonucleotides. On the basis...;
Region: HIT_like; cl00228"
/db_xref="CDD:206916"
misc_feature complement(order(433279..433281,433285..433287,
433297..433299,433324..433326,433468..433470,
433474..433476,433498..433500,433504..433506))
/locus_tag="A1C_02355"
/note="nucleotide binding site/active site [active]"
/db_xref="CDD:29586"
misc_feature complement(order(433273..433281,433285..433287,
433291..433293))
/locus_tag="A1C_02355"
/note="HIT family signature motif; other site"
/db_xref="CDD:29586"
misc_feature complement(433285..433287)
/locus_tag="A1C_02355"
/note="catalytic residue [active]"
/db_xref="CDD:29586"
gene complement(433818..434051)
/locus_tag="A1C_02360"
/db_xref="GeneID:5645221"
CDS complement(433818..434051)
/locus_tag="A1C_02360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493281.1"
/db_xref="GI:157825561"
/db_xref="GeneID:5645221"
/translation="MWLVVAITVIANVIVTVINIEAFKCILQIVLILGFGFFTSDIGE
NYLTRNNYRLEYIIIANSSIEAEVKFLERSVFI"
gene 434562..435110
/locus_tag="A1C_02365"
/db_xref="GeneID:5645222"
CDS 434562..435110
/locus_tag="A1C_02365"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease peptidase subunit"
/protein_id="YP_001493282.1"
/db_xref="GI:157825562"
/db_xref="GeneID:5645222"
/translation="MSDNLALHGTTILCLKKNEEIIIAADGQVSHGNTVLKSTARKLR
TIANNKIIAGFAGSTADGLALFEKLEVKIEQHKHNLLRSAVELAKDWRNDKYLRRLEA
MMIVGDRSHILILTGNGDVVEPENNVAAIGSGGLFALSAARALMSYENNLTAEEIALK
SMNIAADLCVFSNHNIIMEKVV"
misc_feature 434589..435104
/locus_tag="A1C_02365"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature order(434589..434591,434637..434639,434643..434645,
434685..434687,434958..434960)
/locus_tag="A1C_02365"
/note="active site"
/db_xref="CDD:48442"
misc_feature order(434658..434666,434835..434837,434916..434918,
434928..434930,434967..434972,434979..434981,
435003..435005,435039..435041,435051..435053,
435060..435065,435069..435071)
/locus_tag="A1C_02365"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 435107..436459
/gene="hslU"
/locus_tag="A1C_02370"
/db_xref="GeneID:5645789"
CDS 435107..436459
/gene="hslU"
/locus_tag="A1C_02370"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit HslU"
/protein_id="YP_001493283.1"
/db_xref="GI:157825563"
/db_xref="GeneID:5645789"
/translation="MKATKTTYQKDHMGLTPSQIVNELNRFIVGQEKAKKAVAIALRN
RCRRKRVEGNLRNEIVPKNILMIGSTGVGKTEIARRLAKLTYSPFYKIEATKFTEVGY
VGRDVESIIRDLVEIAVNTEKTLAKTEVDINAREQAIERILDSLVGKTSSSETREKFK
EKILNGELDDTEIEISVADTTPVGGGSFEIPGMPGASMGVLNLGDVIGRALGGSKTKT
KKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLAENDGIVFIDEIDKIASTGSSGAKN
AEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFIASGAFHIAKPSDLLPELQGRLP
IRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVYIAFTDSAIEKIADYAITVNL
EVEDIGARRLHTILENLLEDISFEASEMKGRKITIDDKFVENQLSKIITNLDLAKFVL
"
misc_feature 435143..436456
/gene="hslU"
/locus_tag="A1C_02370"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature 435191..>435475
/gene="hslU"
/locus_tag="A1C_02370"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 435308..435331
/gene="hslU"
/locus_tag="A1C_02370"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 435311..435334
/gene="hslU"
/locus_tag="A1C_02370"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 435662..436114
/gene="hslU"
/locus_tag="A1C_02370"
/note="AAA domain (Cdc48 subfamily); Region: AAA_2;
pfam07724"
/db_xref="CDD:203740"
misc_feature 436130..436390
/gene="hslU"
/locus_tag="A1C_02370"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 436652..436720
/gene="lpxB"
/locus_tag="A1C_02375"
/db_xref="GeneID:5645790"
CDS 436652..436720
/gene="lpxB"
/locus_tag="A1C_02375"
/EC_number="2.4.1.182"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_001493284.1"
/db_xref="GI:157825564"
/db_xref="GeneID:5645790"
/translation="MKAGMIKQAMQQTIAFVGITDK"
gene 436733..437908
/gene="lpxB"
/locus_tag="A1C_02380"
/db_xref="GeneID:5645791"
CDS 436733..437908
/gene="lpxB"
/locus_tag="A1C_02380"
/note="catalyzes the formation of lipid A disaccharide
from UDP-2,3-diacylglucosamine and
2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is
a precursor of lipid A that anchors LPS to the OM"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_001493285.1"
/db_xref="GI:157825565"
/db_xref="GeneID:5645791"
/translation="MTKVYFIAGETSGDFIGGRIIQNLKSNKGVEFTGIGGKCMEEAG
NFKSLFPITCINLMGFVEILPHIFNLKKLIDKTVQDIINSQADLLITIDSPGFTYRVA
KQLRKLLPKLKMIHIVAPSVWAYKDGRAVKYAKIYDCLFALLPFEPPYFTKVGLDCRY
IGHPIMEQEFYSDKIALREEFKIDKNERVLCVTLGSRQGEIRKHLPVFISSIEEIFKS
CNNLKVIFTLANPAHEAIIKPFLEDVQFHYLFSSARLKAYAVADAALAKSGTNTLEIV
ASGTPMVVAYQVNLISFFIIRLLIKIKYVTLINIIAGSEIIPEFIQFNCRASLISNTL
QELLFNSKKAYKQVIESQKILQTLGLKSNRSPSYIAAEIIKQEFLESKIKLLKENST"
misc_feature 436733..437869
/gene="lpxB"
/locus_tag="A1C_02380"
/note="lipid-A-disaccharide synthase; Reviewed; Region:
lpxB; PRK00025"
/db_xref="CDD:178802"
misc_feature 436733..437698
/gene="lpxB"
/locus_tag="A1C_02380"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:184498"
gene complement(437888..438169)
/locus_tag="A1C_02385"
/db_xref="GeneID:5645792"
CDS complement(437888..438169)
/locus_tag="A1C_02385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493286.1"
/db_xref="GI:157825566"
/db_xref="GeneID:5645792"
/translation="MIQDHNSDLKHEEHTERLKALQNKLGNLSGFLTTMRSDNNEEYK
KISNDLEILMKQINTIRKNMEIYFVIILILMFIVIQKMLWTTGSSTILF"
gene 438485..439534
/locus_tag="A1C_02390"
/db_xref="GeneID:5645793"
CDS 438485..439534
/locus_tag="A1C_02390"
/note="COG1559 Predicted periplasmic solute-binding
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493287.1"
/db_xref="GI:157825567"
/db_xref="GeneID:5645793"
/translation="MVTIFLSLIKIIVIMLINLLKTKLFLVIVSLTIFITMLNFSIFY
IFVPGNLTQNITITIEPKLSVNQIVTKLYSNGVIKYPRIFKVIAKIYSIKRPLKSGEY
VFTRNISPLQTLRILASGKSIIHKIIVPEGTVVSEVIKKINEESRLLGEIKGIIPEGF
LMPSTYFFSYGDQKEQIIDQMRNLMSANLDKVMQNLSPNSPLKTRLDVLTLASIIEKE
AGSNAEKPIIAAVFINRLKKNMKLQADPTTIYALTEGKFKLARALTKKDLLQELPYNT
YYIKGLPPGPISCPSLKSLEAVVKPAKTDALFFVVDGKGGHNFSNNLNDHNRFVETYR
KSLIKMPEPEIDLDK"
misc_feature 438647..439483
/locus_tag="A1C_02390"
/note="YceG-like family; Region: YceG; pfam02618"
/db_xref="CDD:202312"
misc_feature 438773..439474
/locus_tag="A1C_02390"
/note="proteins similar to Escherichia coli yceG; Region:
yceG_like; cd08010"
/db_xref="CDD:153433"
misc_feature order(438773..438775,438779..438796,438821..438823,
438833..438835,438854..438859,438866..438868,
439211..439213,439217..439219,439277..439279,
439286..439288,439427..439432,439451..439453,
439460..439465,439472..439474)
/locus_tag="A1C_02390"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153433"
gene 439581..439886
/gene="cyaY"
/locus_tag="A1C_02395"
/db_xref="GeneID:5645794"
CDS 439581..439886
/gene="cyaY"
/locus_tag="A1C_02395"
/note="defects in the mitochondrial frataxin protein cause
Friedreich ataxis which is an autosomal recessive
neurodegenerative disease; based on phylogenomic
distribution this protein may have a role in iron-sulfur
cluster protein assembly"
/codon_start=1
/transl_table=11
/product="frataxin-like protein"
/protein_id="YP_001493288.1"
/db_xref="GI:157825568"
/db_xref="GeneID:5645794"
/translation="MNNTEFSKIADITIAYITDTIEEQDKEASIDVDLQGDILNLDTD
KGIYVINKQSAAKEIWLSSPVSGPCHFFYEQGKWKNRVGLELMAILTEELDIDFNNV"
misc_feature 439581..439883
/gene="cyaY"
/locus_tag="A1C_02395"
/note="frataxin-like protein; Provisional; Region: cyaY;
PRK01379"
/db_xref="CDD:134546"
misc_feature order(439587..439589,439611..439616,439623..439625,
439635..439637,439644..439649,439665..439667,
439671..439673)
/gene="cyaY"
/locus_tag="A1C_02395"
/note="putative iron binding site [ion binding]; other
site"
/db_xref="CDD:29607"
gene 440370..440480
/locus_tag="A1C_02410"
/db_xref="GeneID:5645795"
CDS 440370..440480
/locus_tag="A1C_02410"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493289.1"
/db_xref="GI:157825569"
/db_xref="GeneID:5645795"
/translation="MKFSEELNASFLVFIDDSAKYVEDVRDYCKKNNIGF"
misc_feature <440373..440477
/locus_tag="A1C_02410"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene 440495..440623
/locus_tag="A1C_02415"
/db_xref="GeneID:5645144"
CDS 440495..440623
/locus_tag="A1C_02415"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493290.1"
/db_xref="GI:157825570"
/db_xref="GeneID:5645144"
/translation="MLKNLIGEPDPKLTKFQESYLIENAKLLEDEEAYKLIVRNNY"
gene 440670..440873
/locus_tag="A1C_02420"
/db_xref="GeneID:5645145"
CDS 440670..440873
/locus_tag="A1C_02420"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493291.1"
/db_xref="GI:157825571"
/db_xref="GeneID:5645145"
/translation="MRGAVKPTVSPSSLDHGGPKIIKILIILVFLTGSCGHATGDDVG
ETAPCNNATQKWHQESYNNLNNL"
gene 441000..441077
/locus_tag="A1C_02425"
/db_xref="GeneID:5645146"
CDS 441000..441077
/locus_tag="A1C_02425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493292.1"
/db_xref="GI:157825572"
/db_xref="GeneID:5645146"
/translation="MAVSAIKVETEIIGDISGAVILDLP"
gene 441362..441742
/locus_tag="A1C_02430"
/db_xref="GeneID:5645147"
CDS 441362..441742
/locus_tag="A1C_02430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493293.1"
/db_xref="GI:157825573"
/db_xref="GeneID:5645147"
/translation="MATEHAINVIVNGASAVCSIQDVISDVSTNYSFIATFAQATVAS
LATFAYYNPPVIIGVCALGAIAISPYDSIKRAENTIKAGRAVGYVACEIVECLMAGAS
GIVLLIADNIYGDTAELAGVLILI"
gene complement(441926..443269)
/gene="gltX"
/locus_tag="A1C_02435"
/db_xref="GeneID:5645148"
CDS complement(441926..443269)
/gene="gltX"
/locus_tag="A1C_02435"
/EC_number="6.1.1.17"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_001493294.1"
/db_xref="GI:157825574"
/db_xref="GeneID:5645148"
/translation="MTKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDD
TDLERSKQEYKDAIKDDLKFLNLHWDQTFNQLSRLSRYDEIKNLLLDKKRLYACYETP
DELELKRKFQLSKGLPPMYDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMI
KGEIQYDGKALSDPIVIRADGSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMF
EALNNTPTTFGHLSLIINKDEKISKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQ
ILPYKSMEKLINQFEISSFSKSPTIYQPKDLERLNHKLLISLDFDEVKDHLKEIDAEY
IDENFWLSIRPNLQKLRDVKDWWEICHHTPNVESLNLDQEYLKQAAELLPQGAITKDS
WSIWTKEITNITGRKGKELFLPLRLALTGRESGPEIADVLPLISREEIVKRLTSA"
misc_feature complement(441935..443266)
/gene="gltX"
/locus_tag="A1C_02435"
/note="glutamyl-tRNA synthetase; Provisional; Region:
PRK12558"
/db_xref="CDD:183594"
misc_feature complement(<442991..443263)
/gene="gltX"
/locus_tag="A1C_02435"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(443210..443221)
/gene="gltX"
/locus_tag="A1C_02435"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature complement(442325..>442732)
/gene="gltX"
/locus_tag="A1C_02435"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(442535..442546)
/gene="gltX"
/locus_tag="A1C_02435"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(442535..442546)
/gene="gltX"
/locus_tag="A1C_02435"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene complement(443524..445854)
/locus_tag="A1C_02440"
/db_xref="GeneID:5645149"
CDS complement(443524..445854)
/locus_tag="A1C_02440"
/EC_number="5.99.1.2"
/note="catalyzes the ATP-dependent breakage of
single-stranded DNA followed by passage and rejoining,
maintains net negative superhelicity"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="YP_001493295.1"
/db_xref="GI:157825575"
/db_xref="GeneID:5645149"
/translation="MKLVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLP
DENFAMKYDISDKASKYVDAIVKDAKKADSVYLATDPDREGESISWHVAEVIKEKNKV
KSDDFFKRVAFNEITKKAIIHAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRK
LPGCKSAGRVQSVALRLICEREDKIERFKSEEYWDISIKIQSSNNELFTAQLTHVNDQ
KLEKFSIINAKDAKDLTEKLKSQKFHVDKIEKKQQKRAPQPPFITSSLQQEAARKLGF
SAKKTMQIAQKLYEGVDIGKETIGLITYMRTDGVTLSNDAIADIRKLIDTSYGNKYLP
SSPRIYKSKVKNAQEAHEAIRPTNITYTPDNLKELLEKDYYKLYELIWKRTVACQMEN
VIMDLVVASLASENKEYLAKATGSTITFDGFYKIYRESVDDEDEEENKMLPPLKEQES
LKTKEIIPNQHFTEPPPRYSEASLVKKLEELGIGRPSTYASILSVLQDRKYVTLEKKR
FIPEELGRLVTVFLVGFFRKYVEYDFTAGLENELDEIAAGKLEWKAALNNFWSGFNNN
IKSVNEQKITEIISYVQKALDYHLFGENKESKVCPSCKTGELSLKLGKFGAFLACSNY
PECTFRKSIVSGNDNNENEAELSAIPNGNKILGTDKDGIEIYLKKGPYGPYIQHGEQE
GKVKPKRSPIPAILNQNDITLEIALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYM
SKFISIPKKYDFLNLSLDDAMKLIEDNNAKLETTQG"
misc_feature complement(443824..445854)
/locus_tag="A1C_02440"
/note="DNA topoisomerase I; Validated; Region: PRK06599"
/db_xref="CDD:180637"
misc_feature complement(445471..445854)
/locus_tag="A1C_02440"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature complement(order(445603..445605,445609..445611,
445615..445617,445822..445824,445831..445836))
/locus_tag="A1C_02440"
/note="active site"
/db_xref="CDD:173783"
misc_feature complement(order(445573..445578,445582..445587,
445606..445608,445612..445614,445813..445815))
/locus_tag="A1C_02440"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature complement(order(445609..445611,445615..445617))
/locus_tag="A1C_02440"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature complement(445606..445608)
/locus_tag="A1C_02440"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature complement(444163..445458)
/locus_tag="A1C_02440"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:73184"
misc_feature complement(order(445300..445362,445375..445458))
/locus_tag="A1C_02440"
/note="domain I; other site"
/db_xref="CDD:73184"
misc_feature complement(order(444358..444363,444373..444375,
444379..444384,444391..444396,444937..444939,
444985..444987,444997..444999,445393..445395,
445405..445407,445417..445419,445426..445431))
/locus_tag="A1C_02440"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:73184"
misc_feature complement(order(444286..444288,445315..445317,
445327..445329))
/locus_tag="A1C_02440"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73184"
misc_feature complement(order(444463..444495,444574..444621,
444628..444636,444640..444684,445087..445134,
445267..445287))
/locus_tag="A1C_02440"
/note="domain II; other site"
/db_xref="CDD:73184"
misc_feature complement(order(444685..444714,444718..444750,
444781..444807,444871..444957,444982..445062,
445066..445086))
/locus_tag="A1C_02440"
/note="domain III; other site"
/db_xref="CDD:73184"
misc_feature complement(order(444328..444330,444394..444396,
444400..444402,444706..444708,444721..444723,
444730..444732,444802..444804,445033..445041,
445051..445053))
/locus_tag="A1C_02440"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73184"
misc_feature complement(order(444802..444804,444937..444939,
444943..444945))
/locus_tag="A1C_02440"
/note="catalytic site [active]"
/db_xref="CDD:73184"
misc_feature complement(order(444163..444270,444286..444330,
444340..444462))
/locus_tag="A1C_02440"
/note="domain IV; other site"
/db_xref="CDD:73184"
misc_feature complement(443956..444057)
/locus_tag="A1C_02440"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature complement(443695..443853)
/locus_tag="A1C_02440"
/note="Topoisomerase C-terminal repeat; Region:
Toprim_C_rpt; pfam13368"
/db_xref="CDD:205547"
gene complement(445978..446172)
/locus_tag="A1C_02445"
/db_xref="GeneID:5645150"
CDS complement(445978..446172)
/locus_tag="A1C_02445"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493296.1"
/db_xref="GI:157825576"
/db_xref="GeneID:5645150"
/translation="MIREGAYLVESVDDIVANLPQYEKFMKKDYGLFKDFVELGTVNT
RYVKGAYCYIGITISSTDRF"
gene complement(446634..446957)
/locus_tag="A1C_02450"
/db_xref="GeneID:5645410"
CDS complement(446634..446957)
/locus_tag="A1C_02450"
/codon_start=1
/transl_table=11
/product="putative DNA processing protein DprA"
/protein_id="YP_001493297.1"
/db_xref="GI:157825577"
/db_xref="GeneID:5645410"
/translation="MLKKLFSAPKISYDIETINILRLIRSDNIGPKTFCSLIQLFGDA
GTAIDNAPDFSLQGGQSKQIKIFNKSDAAKEMDLLKKNDTKIITYNAPEYSKSLLEIY
DLQSY"
misc_feature complement(<446649..446921)
/locus_tag="A1C_02450"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:31101"
gene complement(447151..447753)
/locus_tag="A1C_02455"
/db_xref="GeneID:5645411"
CDS complement(447151..447753)
/locus_tag="A1C_02455"
/note="COG0450 Peroxiredoxin"
/codon_start=1
/transl_table=11
/product="thioredoxin peroxidase 1"
/protein_id="YP_001493298.1"
/db_xref="GI:157825578"
/db_xref="GeneID:5645411"
/translation="MSVFVGKTAPDFTAKAIMPNNNIDEKFKLSDYAAGDNIVLFFYP
LDFTFVCPSEIIAFHNKLGEFTERRTKVVAVSVDSHFSHLAWKNTPHNKGGLGQVQFP
MVSDIKKDISSKYNVLNEDCFALRGTFLIDKDFIVRHMLVNDLPIGRDINYTLKVIDA
LTHHQKHGEVCPAGWHKGEEAITPSHEGIAHYLSSHAEKL"
misc_feature complement(447187..447753)
/locus_tag="A1C_02455"
/note="Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones]; Region: AhpC; COG0450"
/db_xref="CDD:30799"
misc_feature complement(447220..447741)
/locus_tag="A1C_02455"
/note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells through
its peroxidase activity by reducing hydrogen peroxide,
peroxynitrite, and organic hydroperoxides; Region:
PRX_Typ2cys; cd03015"
/db_xref="CDD:48564"
misc_feature complement(order(447232..447243,447286..447288,
447307..447312,447322..447330,447334..447342,
447379..447381,447406..447408,447595..447597,
447604..447609,447739..447741))
/locus_tag="A1C_02455"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48564"
misc_feature complement(order(447391..447393,447427..447429,
447433..447435,447508..447513,447613..447615))
/locus_tag="A1C_02455"
/note="decamer (pentamer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:48564"
misc_feature complement(order(447376..447378,447601..447603,
447610..447612))
/locus_tag="A1C_02455"
/note="catalytic triad [active]"
/db_xref="CDD:48564"
misc_feature complement(order(447241..447243,447601..447603))
/locus_tag="A1C_02455"
/note="peroxidatic and resolving cysteines [active]"
/db_xref="CDD:48564"
gene complement(447835..448770)
/locus_tag="A1C_02460"
/db_xref="GeneID:5645412"
CDS complement(447835..448770)
/locus_tag="A1C_02460"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="membrane protease subunit
stomatin/prohibitin-like protein"
/protein_id="YP_001493299.1"
/db_xref="GI:157825579"
/db_xref="GeneID:5645412"
/translation="MEYALLIFSIIAILVIIQMVKVVPQQQAWVVEKLGKFDKVLQPG
LNLLIPVIQRVAYKHTLKEEAIDVTAQTAISNDNVTLSIDGVLYVKIIDPIAASYGVN
NPYYAITQLAQTTMRSEIGKLPLDRTFEERETLNVAIVTAINQAAINWGIQCMRYEIK
DIQPPQTILKAMELQVAAERQKRAQILESEGNRQAKINHAEGEKAQIVLNSEASYTDQ
VNRAKGEAEAIGLVATATANSIEIVAAVVQKAGGSDAVALKIAEQYISAFGNLAKDTN
TVILPANLSEPGSFITGALTIFNQLKASSEKKIDK"
misc_feature complement(447895..448719)
/locus_tag="A1C_02460"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:30678"
misc_feature complement(448072..448704)
/locus_tag="A1C_02460"
/note="Band_7_stomatin_like: A subgroup of the band 7
domain of flotillin (reggie) like proteins similar to
stomatin and podicin (two lipid raft-associated integral
membrane proteins). Individual proteins of this band 7
domain family may cluster to form...; Region:
Band_7_stomatin_like; cd03403"
/db_xref="CDD:48215"
gene complement(449549..451117)
/locus_tag="A1C_02465"
/db_xref="GeneID:5645413"
CDS complement(449549..451117)
/locus_tag="A1C_02465"
/note="COG2194 Predicted membrane-associated,
metal-dependent hydrolase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493300.1"
/db_xref="GI:157825580"
/db_xref="GeneID:5645413"
/translation="MLKTIQKHIDIKLIKLSAVLAFVYCLLFNTAILIYKFDYYKAII
FKGILELSKDCCYIYIFSFITFFGLSVHRLVLKAGVGFLFMTSAIASYYIYFFKINPT
KQVIGSFFSTDLNEVYELTSIKLVIWIIFCLFTCFYILKSFAAENSKSCVTKLLSAAC
LLIFVYNIITPSFKILKNYFPIQYLHNSYLNFAGTFGDKNYAYIDISKQYNFIDNSDA
DIIGVLVIGESARFDHFGINGYERDTTPYLKTTPNLTSFKAKSSSNLTYLSVPSLLSR
YPASQIEKTRQENSFLSILTNLGFHTTWIGTQTLMRSFANFDLSNIYNDINFTIVPGG
SALFSLNDHDEKILPFIKEIITNSEKQFLVVHTSGSHWNYNARYPKEFEYFTPTCPIK
VKGDASDCDKLELVNSYDNSILYTDFFLSNLIDLLKDKNAFLLYVSDHGESLGENGYY
GHGGPLLAEQITVPLIVWVSDDFQTKYPKSVSSIKNYANTEISHDYVFHSILDCLNID
SDIIDKNLSICKSS"
misc_feature complement(449552..451114)
/locus_tag="A1C_02465"
/note="Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only]; Region:
COG2194"
/db_xref="CDD:32377"
misc_feature complement(<450596..450946)
/locus_tag="A1C_02465"
/note="Domain of unknown function (DUF1705); Region:
DUF1705; pfam08019"
/db_xref="CDD:149223"
misc_feature complement(449582..450451)
/locus_tag="A1C_02465"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene 451193..451657
/locus_tag="A1C_02470"
/db_xref="GeneID:5645414"
CDS 451193..451657
/locus_tag="A1C_02470"
/note="similar to RuvC resolvase with substantial
differences; NMR structural information suggests this
protein is monomeric; unknown cellular function"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase-like protein"
/protein_id="YP_001493301.1"
/db_xref="GI:157825581"
/db_xref="GeneID:5645414"
/translation="MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPL
NTITEINKKIVITSLLSIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTKSIN
LPIYLQDERLTTKAANNFLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI"
misc_feature 451247..451642
/locus_tag="A1C_02470"
/note="Uncharacterized protein family (UPF0081); Region:
UPF0081; pfam03652"
/db_xref="CDD:202719"
gene 451872..452057
/locus_tag="A1C_02475"
/db_xref="GeneID:5645415"
CDS 451872..452057
/locus_tag="A1C_02475"
/note="COG3093 Plasmid maintenance system antidote
protein"
/codon_start=1
/transl_table=11
/product="plasmid maintenance system antidote protein"
/protein_id="YP_001493302.1"
/db_xref="GI:157825582"
/db_xref="GeneID:5645415"
/translation="MTNKLPPISPEQILLEEFMEPMGISQSKLASDIDVPVTRINNMI
KHHRSILADTALRLSKN"
misc_feature 451887..>452051
/locus_tag="A1C_02475"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
misc_feature order(451917..451919,451929..451931,452004..452006)
/locus_tag="A1C_02475"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(451926..451928,452001..452003)
/locus_tag="A1C_02475"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(451947..451952,451983..451985,451992..451994,
452004..452009)
/locus_tag="A1C_02475"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 452296..453150
/locus_tag="A1C_02480"
/db_xref="GeneID:5645416"
CDS 452296..453150
/locus_tag="A1C_02480"
/note="COG1091 dTDP-4-dehydrorhamnose reductase"
/codon_start=1
/transl_table=11
/product="dTDP-4-dehydrorhamnose reductase"
/protein_id="YP_001493303.1"
/db_xref="GI:157825583"
/db_xref="GeneID:5645416"
/translation="MKILILGVTGMLGNSIFRFLSREKKFDVYATARNNSARFYFSKD
LSNQLITNVDVENHDSLVEVFYKVKPDIVINCIGIVKQLADANDPLKALPINSLLPHR
LANLCKLANSRLIHISTDCVFSGKKGNYKESDFPDCDDLYGRSKFLGEVDYPHAITLR
TSIIGHELAGNRSLIDWFLSAEGQIKGFEKAIYSGFPTVELARIIMDFVLPNKELHGL
YHVASKPINKLELLRLVAEIYNKAIDIIPSDELVIDRSMDGTRFNEVTGYNPPQWSEL
VKRMYEFG"
misc_feature 452296..453144
/locus_tag="A1C_02480"
/note="dTDP-4-dehydrorhamnose reductase [Cell envelope
biogenesis, outer membrane]; Region: RfbD; COG1091"
/db_xref="CDD:31288"
misc_feature 452299..453129
/locus_tag="A1C_02480"
/note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase and
related proteins, extended (e) SDRs; Region:
dTDP_HR_like_SDR_e; cd05254"
/db_xref="CDD:187564"
misc_feature order(452314..452316,452320..452331,452389..452394,
452452..452463,452521..452529,452533..452535,
452578..452580,452644..452652,452719..452721,
452731..452733,452776..452787)
/locus_tag="A1C_02480"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187564"
misc_feature order(452581..452583,452650..452652,452719..452721,
452731..452733)
/locus_tag="A1C_02480"
/note="active site"
/db_xref="CDD:187564"
misc_feature order(452650..452652,452719..452721,452782..452784,
452827..452829,452854..452856,452872..452874)
/locus_tag="A1C_02480"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187564"
gene 453327..454352
/locus_tag="A1C_02485"
/db_xref="GeneID:5645868"
CDS 453327..454352
/locus_tag="A1C_02485"
/note="COG1086 Predicted nucleoside-diphosphate sugar
epimerases"
/codon_start=1
/transl_table=11
/product="CapD protein"
/protein_id="YP_001493304.1"
/db_xref="GI:157825584"
/db_xref="GeneID:5645868"
/translation="MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEK
KQEDMRIALSNPKLKFYIGDVRNYKSIDEAMRGVDYVFHAAALKQVPTCEFYPMEAIN
TNVLGAENVLSAAINNKVAKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFE
HGRQGDIFVQKSPASTIEILAKALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKA
DDLGGYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLNLEEVKKLLLTLDYI
QEELKNA"
misc_feature 453327..454331
/locus_tag="A1C_02485"
/note="UDP-N-acetylglucosamine
4,6-dehydratase/5-epimerase; Region: FnlA; TIGR04130"
/db_xref="CDD:200381"
misc_feature 453336..454151
/locus_tag="A1C_02485"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature order(453357..453359,453363..453374,453444..453449,
453513..453521,453576..453584,453588..453590,
453633..453635,453702..453704,453750..453752,
453828..453839,453846..453851)
/locus_tag="A1C_02485"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature order(453447..453449,453453..453455,453465..453467,
453477..453479,453507..453518,453525..453527,
453534..453536,453582..453593,453600..453602,
453612..453614,453621..453623,453630..453632,
453849..453854,453867..453869)
/locus_tag="A1C_02485"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(453588..453590,453708..453716,453738..453740,
453831..453836,453852..453860,453867..453872,
453903..453911,453921..453923,453927..453929,
454029..454031,454098..454100,454107..454109)
/locus_tag="A1C_02485"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(453636..453638,453708..453710,453738..453740,
453750..453752)
/locus_tag="A1C_02485"
/note="active site"
/db_xref="CDD:187548"
misc_feature 454188..454331
/locus_tag="A1C_02485"
/note="Polysaccharide biosynthesis protein C-terminal;
Region: Polysacc_syn_2C; pfam08485"
/db_xref="CDD:149510"
gene 454345..455604
/locus_tag="A1C_02490"
/db_xref="GeneID:5645869"
CDS 454345..455604
/locus_tag="A1C_02490"
/note="COG0381 UDP-N-acetylglucosamine 2-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine 2-epimerase"
/protein_id="YP_001493305.1"
/db_xref="GI:157825585"
/db_xref="GeneID:5645869"
/translation="MLKVMTIVGTRPELIKLCCVISEFDKYTNHILVHTGQNYAYELN
QVFFDDMGIRKPDYFLEVAADNTAKSIGLIIEQVDAVLEKEKPDAVLFYGDTNSCLSA
IAAKRRKIPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITLTEHARRYLISEGLPP
ELIFKSGSHMPEVLDRFMPKILKSDILDTLSLQAKQYFLISSHREENVDVKNNLQELL
SSLQTLIKEYNFPVIFSTHPRTKKRLEDLGGGKELGDKIRFLPAFSFTDYVKLQMNAF
CILSDSGTITEEASILNLPALNIREAHERPEGMDAGTLIMSGFNAARVLQSVKSITAE
HENNKDTEEIYSNDLENCNVKRGTSTHSLYLIGGHASSPKFCRDNSSKQKSIVSDYAA
AGLVSKKILRIVLSYVDYVNRTVWFKK"
misc_feature 454345..455601
/locus_tag="A1C_02490"
/note="UDP-N-acetylglucosamine 2-epimerase [Cell envelope
biogenesis, outer membrane]; Region: WecB; COG0381"
/db_xref="CDD:30730"
misc_feature 454351..455343
/locus_tag="A1C_02490"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature order(454375..454377,455131..455133,455137..455139,
455146..455148,455194..455196,455206..455208)
/locus_tag="A1C_02490"
/note="active site"
/db_xref="CDD:99962"
misc_feature order(454546..454548,454552..454557,454579..454581,
454660..454665,454669..454671,454675..454677,
454726..454728,454738..454740,454807..454809)
/locus_tag="A1C_02490"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 455633..456907
/locus_tag="A1C_02495"
/db_xref="GeneID:5645870"
CDS 455633..456907
/locus_tag="A1C_02495"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493306.1"
/db_xref="GI:157825586"
/db_xref="GeneID:5645870"
/translation="MKFFKLIKLNLVFLSVFLLITLISSCCYSKENSYKKIVFLVSTE
TFGGKGVYAMYNEMKKIGHDVKIVIVPHPHPNIQGGIDTEFISKFDIQDVIYPCGKYA
SYSNVNTKCEISELKKYQPDFIFTQNPYENFQGYISEPFTAANLYKSFRGTKTKIMYI
VYGPHIFHQKNIDDDKLSSFIETVFVDSESTKDIFMSNYKFPKDRVIVSGYQPYYEVR
HYNINEKPNSETILWLPRWELSFKNRDLYEGGSTFLNYHYFFYNYALQHPDIHFIIRP
HVTLFTYAVGKNYLSQSDMDNILSRFNSLKNVTVSAHAFRSLLDDIMVSDIVISDGTS
SLAEVVVADKPIIYLSNGWNNEFNSNALSKELKKYMYFAYEPQDIINYIEFIKQNHYL
PYHENSSGRNQFKKMLDPVENPAAFIAEYLLK"
gene 456926..457111
/locus_tag="A1C_02500"
/db_xref="GeneID:5645871"
CDS 456926..457111
/locus_tag="A1C_02500"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493307.1"
/db_xref="GI:157825587"
/db_xref="GeneID:5645871"
/translation="MLEEIYNDGERLMPGEIHDVLEVMRHKSSYKFFKKIIEADILNS
PLMPNQKIKILDICCGI"
gene 457124..457387
/locus_tag="A1C_02505"
/db_xref="GeneID:5645872"
CDS 457124..457387
/locus_tag="A1C_02505"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493308.1"
/db_xref="GI:157825588"
/db_xref="GeneID:5645872"
/translation="MLSGVLGVEIIAIDISKESIIYAEQNCGASNIKYIKSDLISLIK
KSEEYDDIVSRHALEHIEDGLNLALNLKYKNRLIVNVHFNEPE"
gene 458015..459829
/locus_tag="A1C_02510"
/db_xref="GeneID:5645873"
CDS 458015..459829
/locus_tag="A1C_02510"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_001493309.1"
/db_xref="GI:157825589"
/db_xref="GeneID:5645873"
/translation="MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENI
EIVVVNDGSKDNGKTENVALSYGDKIRYFYKENGGCGSALNYGIKNMNGEYFSWLSHD
DIYYPNKIEHQVNILNKLDNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLL
PLLRGLIHGCSLLMPAKYFHEIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSR
FHSEQGSKKISNHNEECNVLWSSFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYK
KACDLANTMAKQVLHDTKVSVIIPVYNRINWAIEAIESVLIQTHKNFEILIIDDGSTD
DISELIARCKKDKRIRYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQ
LQFMEENNCIFSHTSYQKIDEKAKYIESVHSGCFSGNVFPQVIQTCPIAMPTVMGTWT
LFQENLFPENIRSGEDCCLWISIASKNSIGGIDKELSKVRISGGTNTFMDPNKYSVGL
INITSYVLNDRYLSKFSPFTINLLLAAVTQLRLLENKNKYYKKSNISSSNNNYVMQKI
RTYCFVTKILILLTITSIRQEGIRATISRIRRWLRKHI"
misc_feature 458054..>458347
/locus_tag="A1C_02510"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature 458063..458641
/locus_tag="A1C_02510"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature order(458075..458077,458081..458083,458159..458161,
458312..458314,458318..458320)
/locus_tag="A1C_02510"
/note="active site"
/db_xref="CDD:132997"
misc_feature 458903..>459214
/locus_tag="A1C_02510"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cd00761"
/db_xref="CDD:132997"
misc_feature order(458912..458914,458918..458920,458996..458998,
459149..459151,459155..459157)
/locus_tag="A1C_02510"
/note="active site"
/db_xref="CDD:132997"
gene complement(460889..461656)
/locus_tag="A1C_02525"
/db_xref="GeneID:5645874"
CDS complement(460889..461656)
/locus_tag="A1C_02525"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493310.1"
/db_xref="GI:157825590"
/db_xref="GeneID:5645874"
/translation="MYSKINKVHDFKEVIQAIEQADNTSLVLFDVDGVIVMDSDESRL
THDYRKALMEDIEKRLTKKECELLLSVILKEKKARFVNSDILEIFALLKAKNIPAMGL
TKLPTGKFGVIEDMIEWRVRELTELKVNFQEFSPSEDEIIIEDFNAGYGKPTLKDGII
YTAEYDKGSVLEYVLRKTNYYPQSIIFIDDIEENLLSLQETCKKLKINYQGFEFTGSA
IIPEPDLDAQLEKMRFEILEKEYKWLTDEELKKHTLS"
misc_feature complement(460901..461644)
/locus_tag="A1C_02525"
/note="Protein of unknown function (DUF2608); Region:
DUF2608; pfam11019"
/db_xref="CDD:151466"
misc_feature complement(461072..461578)
/locus_tag="A1C_02525"
/note="Haloacid dehalogenase-like hydrolase; Region:
HAD_2; pfam13419"
/db_xref="CDD:205597"
gene complement(461926..462687)
/locus_tag="A1C_02530"
/db_xref="GeneID:5644649"
CDS complement(461926..462687)
/locus_tag="A1C_02530"
/note="COG0596 Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493311.1"
/db_xref="GI:157825591"
/db_xref="GeneID:5644649"
/translation="MHKLYNKTQDKFIVYDNYKIINTNIPSVIFLHGLMSSMQSTKAI
YLIDYCKKNNYNFIVFDNFGHGNASEQFEDQTISDWLEGVSLILDKLIDKEAILVGSS
MGGWLALLTALKFPDKIKGLVCVAPAPDFTENIWQNISLDDQNKIQKEGILEVNSKNC
EHKYPMSYKLIEDAKKHLLLTKKQIDINIPVHLIHGMLDEDVPYNVSVKLLEKITSKQ
IVMKLIKDGHHNLSREKDLKIMTNSLEEIISDVTK"
misc_feature complement(461983..462606)
/locus_tag="A1C_02530"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
misc_feature complement(<462229..>462477)
/locus_tag="A1C_02530"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 462720..463892
/locus_tag="A1C_02535"
/db_xref="GeneID:5644650"
CDS 462720..463892
/locus_tag="A1C_02535"
/note="COG0438 Glycosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_001493312.1"
/db_xref="GI:157825592"
/db_xref="GeneID:5644650"
/translation="MPSSKSSKRYNKYTVLQVVPALVSGGVERGTIEVAKYLKMLGHT
PIIISAGGTLVKELDKEDILHIEMNSNSKNPFVILNNVKLIAEIIKKYNVDIVHTRSR
APAWSSYLATKWTNAKFLTTFHGVYNIPNSFKKYYNSIMLKGKRVIAVSNFVKQHLLA
HYNIDADKIVVIERGVNCDYFDPANLTPEKLKKCRDKYDAPSNVPIILMPSRMTSWKG
HLVLVEALSKLKHRDFYCLMVGDISRHPNFTNRVKELIATLKLQNKIQIFGNDSDIIN
LYGISDIIVSASIEPEAFGRTIIEGQAMKKLVIATNIGGAVETINNNITGFHVEPNNA
EALVQKIDYCLSILGTDTARKIQEAARHTVINNFSLDLMLRKNLEVYKEIFNNSHN"
misc_feature 462750..463883
/locus_tag="A1C_02535"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature 462765..463838
/locus_tag="A1C_02535"
/note="This family is most closely related to the GT1
family of glycosyltransferases. WavL in Vibrio cholerae
has been shown to be involved in the biosynthesis of the
lipopolysaccharide core; Region: GT1_WavL_like; cd03819"
/db_xref="CDD:99989"
misc_feature order(462795..462797,463347..463355,463539..463541,
463620..463622)
/locus_tag="A1C_02535"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99989"
gene complement(463954..464151)
/locus_tag="A1C_02540"
/db_xref="GeneID:5644651"
CDS complement(463954..464151)
/locus_tag="A1C_02540"
/note="COG1132 ABC-type multidrug transport system, ATPase
and permease components"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001493313.1"
/db_xref="GI:157825593"
/db_xref="GeneID:5644651"
/translation="MSNTKILISDEVCANLDKISIENAQQALKEFLPENLMFIVHHDG
KSHDYNNFDDQYINLEDLMLK"
misc_feature complement(464023..>464151)
/locus_tag="A1C_02540"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(464119..464136)
/locus_tag="A1C_02540"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(464101..464112)
/locus_tag="A1C_02540"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(464023..464034,464035..464037))
/locus_tag="A1C_02540"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(464313..464627)
/locus_tag="A1C_02545"
/db_xref="GeneID:5644652"
CDS complement(464313..464627)
/locus_tag="A1C_02545"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493314.1"
/db_xref="GI:157825594"
/db_xref="GeneID:5644652"
/translation="MVYYDTNDELVVSDYNLIIGERTILSFEKLVLKLGVHYLLAAPS
GKGKTTFVKSLVTCIADPCHSVGEISIPTHYQNPKIIFIDQNSYISVQSTLFEVITSG
LD"
misc_feature complement(<464331..464609)
/locus_tag="A1C_02545"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(464481..464504)
/locus_tag="A1C_02545"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(464373..464375,464478..464486,
464490..464495))
/locus_tag="A1C_02545"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(464373..464384)
/locus_tag="A1C_02545"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
gene complement(464790..465086)
/locus_tag="A1C_02550"
/db_xref="GeneID:5644653"
CDS complement(464790..465086)
/locus_tag="A1C_02550"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493315.1"
/db_xref="GI:157825595"
/db_xref="GeneID:5644653"
/translation="MSLTILYQLDIAYRKEAGKINENKASIVSNISYNTSNILLTDSA
QFVHNQYAKQLKANKEISKKMLFLDRTKNTRITILDISEKCIKSLYYIDKVKNG"
gene complement(465117..465290)
/locus_tag="A1C_02555"
/db_xref="GeneID:5644654"
CDS complement(465117..465290)
/locus_tag="A1C_02555"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_001493316.1"
/db_xref="GI:157825596"
/db_xref="GeneID:5644654"
/translation="MEQKALELLLNEEYKSKILGLKDTEAITNNLFIDIHNTFTIGIL
PLKKLYSLWHRKI"
gene complement(465760..466026)
/gene="rpsD"
/locus_tag="A1C_02560"
/db_xref="GeneID:5644655"
CDS complement(465760..466026)
/gene="rpsD"
/locus_tag="A1C_02560"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="YP_001493317.1"
/db_xref="GI:157825597"
/db_xref="GeneID:5644655"
/translation="MLLYHSSASGHPEKSISTENFNKNNAASNFSKKLAYGMHLIISS
ITGFIVNGTKGSRLFVSATLADELLITERDFRNIILLLLHLKEV"
gene complement(466268..466885)
/gene="rpsD"
/locus_tag="A1C_02565"
/db_xref="GeneID:5645165"
CDS complement(466268..466885)
/gene="rpsD"
/locus_tag="A1C_02565"
/note="primary rRNA binding protein; nucleates 30S
assembly; involved in translational accuracy with proteins
S5 and S12; interacts with protein S5; involved in
autogeneously regulating ribosomal proteins by binding to
pseudoknot structures in the polycistronic mRNA; interacts
with transcription complex and functions similar to
protein NusA in antitermination"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="YP_001493318.1"
/db_xref="GI:157825598"
/db_xref="GeneID:5645165"
/translation="MTKIVRSKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGQNAMIK
TSDYGLHLKAKQRLKCHYGRVTEKQFRNLFVLAQKMKGNTGENFIGLLESRLDTVVYR
MNIAPTIFAARQLVSHGHIKLNGKKADIASIRLKEGDVIAIKESVKQIPLIQESVSKQ
GQTTPGYLSFDVHSLTGKYLRVPALSDVPYPFEAEVHLVIELYSR"
misc_feature complement(466271..466885)
/gene="rpsD"
/locus_tag="A1C_02565"
/note="30S ribosomal protein S4; Validated; Region: rpsD;
PRK05327"
/db_xref="CDD:180018"
misc_feature complement(466607..466867)
/gene="rpsD"
/locus_tag="A1C_02565"
/note="Ribosomal protein S4/S9 N-terminal domain; Region:
Ribosomal_S4; pfam00163"
/db_xref="CDD:201048"
misc_feature complement(466421..466603)
/gene="rpsD"
/locus_tag="A1C_02565"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(466478..466480,466484..466507,
466526..466528,466532..466537,466544..466549,
466553..466558,466562..466567,466601..466603))
/gene="rpsD"
/locus_tag="A1C_02565"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 467004..467921
/locus_tag="A1C_02570"
/db_xref="GeneID:5645166"
CDS 467004..467921
/locus_tag="A1C_02570"
/note="converts protoheme IX and farnesyl diphosphate to
heme O"
/codon_start=1
/transl_table=11
/product="protoheme IX farnesyltransferase"
/protein_id="YP_001493319.1"
/db_xref="GI:157825599"
/db_xref="GeneID:5645166"
/translation="MSSLVTQIDLDKINHSQSTVKDYILLMKPRVMSLVMFTGFVGMW
LAPYSVHPFIAVIVLACISLGAGSAGAINMWYDRDIDSLMKRTQKRPLVRGAIEPDEA
LSFGLITGFFAVFFMALCVNLLASFLLLFTIFYYICIYTIWLKRRSIQNIVIGGVSGA
LPPVIGYAAVSNTISLESIILFLIIFIWTPPHSWALALFCNDDYKNCKVPMMPTVKGI
LYTKEQILIYSILLFLVSLMPFFIGMNNFIYLIIAGMLGLVFLYYSGSLFYDTPDNKQ
AKRLFAYSIFYLFFIFLLLSSTSTISNIS"
misc_feature 467046..467840
/locus_tag="A1C_02570"
/note="protoheme IX farnesyltransferase; Provisional;
Region: PRK04375"
/db_xref="CDD:179840"
gene complement(468248..468667)
/locus_tag="A1C_02575"
/db_xref="GeneID:5645167"
CDS complement(468248..468667)
/locus_tag="A1C_02575"
/note="COG1533 DNA repair photolyase"
/codon_start=1
/transl_table=11
/product="putative lyase"
/protein_id="YP_001493320.1"
/db_xref="GI:157825600"
/db_xref="GeneID:5645167"
/translation="MLKIFNFFKEHPRAKATFATKYVNPKLLNFNPDGKIRIRFSLMP
ARISAILEPKTSPIIQRVKALNIFIEACYEVHLNFAPIIAYEGWLIEYEKLFEDLDPY
INNQYKPFIKAEYIFTYNDKQHERNIAENRLENEALI"
misc_feature complement(468281..>468658)
/locus_tag="A1C_02575"
/note="spore photoproduct lyase; Region: photo_TT_lyase;
cl15393"
/db_xref="CDD:212376"
gene complement(468719..468847)
/locus_tag="A1C_02580"
/db_xref="GeneID:5645168"
CDS complement(468719..468847)
/locus_tag="A1C_02580"
/codon_start=1
/transl_table=11
/product="putative lyase"
/protein_id="YP_001493321.1"
/db_xref="GI:157825601"
/db_xref="GeneID:5645168"
/translation="MRHNYDTLYINENIDQILDILDKHIANLPTKISNQTDSKYWT"
misc_feature complement(<468722..>468811)
/locus_tag="A1C_02580"
/note="spore photoproduct lyase; Region: photo_TT_lyase;
cl15393"
/db_xref="CDD:212376"
gene 469091..469471
/locus_tag="A1C_02585"
/db_xref="GeneID:5645169"
CDS 469091..469471
/locus_tag="A1C_02585"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493322.1"
/db_xref="GI:157825602"
/db_xref="GeneID:5645169"
/translation="MAKPSYLNFDNKNYKWNNDIDDRKYQESYRVDKGEQGVLMCQPY
KNEILPYLKFKTPEIAKESSEKIYEIFLKSLEDNDFIGADMASKYLQIGFTRSRRYAN
YKGGQNMTKNMIIRNYKEEWDPKQ"
misc_feature 469130..>469411
/locus_tag="A1C_02585"
/note="Domain of unknown function (DUF4385); Region:
DUF4385; pfam14328"
/db_xref="CDD:206496"
gene 469453..469566
/locus_tag="A1C_02590"
/db_xref="GeneID:5645170"
CDS 469453..469566
/locus_tag="A1C_02590"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493323.1"
/db_xref="GI:157825603"
/db_xref="GeneID:5645170"
/translation="MGPKTVKSADIFFNKWQEVEDNKKYKKMKIEWKKQYW"
gene 470014..470157
/locus_tag="A1C_02595"
/db_xref="GeneID:5645171"
CDS 470014..470157
/locus_tag="A1C_02595"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493324.1"
/db_xref="GI:157825604"
/db_xref="GeneID:5645171"
/translation="MKKANYDEEAAKITEAIQDFPKNIPNLLLDTEAIIEVYQLRYGL
KCE"
gene complement(470445..472937)
/locus_tag="A1C_02600"
/db_xref="GeneID:5645644"
CDS complement(470445..472937)
/locus_tag="A1C_02600"
/note="COG2982 Uncharacterized protein involved in outer
membrane biogenesis"
/codon_start=1
/transl_table=11
/product="outer membrane assembly protein"
/protein_id="YP_001493325.1"
/db_xref="GI:157825605"
/db_xref="GeneID:5645644"
/translation="MPKNLKYSLIIFTSIILLLVVMPFFIPLDNYKGVIIDKVKEVTN
RDLTINGNIKLSLLPNPAISLSEIKLSSINGTKDPHLVSVESAKASLRLFPLFRGAIE
VASIELQKPIINLEVLNNGQKNWLFDTSNNKPKKNHFSYAESTNTKSELELPILISHF
KIIDGKVIYIEKNSEKILNDINLETKIKSLKGPIDFTLALSALQQQINIDGNIEELRP
IIPLSANINLASEKIKIEGNFDSENNSFIGKANIKGNTKTLAMPAYLQNDYELTTAIT
ADNKNVTIKDARLNYTNIELLANANYDIERNNLKSNIIVNPGNIITELSSNLDKTNII
LQADSLKPILDALKLKIDKLPPIINQKLMLTSNVISNSQTIKLQNISLSVANSNLTGD
IELKNLAQDITISHNLKINNFESFMSLMGVSNLSKIGVLQLNGEVQKVKDTFHINNKI
SAFNTNISIKGAINLAAQKPNFNLNLYSPLVNLDKILASHSPTPVLNQTSNHANQNIA
TAKNNSPWSNNPINLGFLNEIEGQLSANIDKLTNDSLIINNLKAKLNIIGGQLNITSV
NASIYGGELSSTGYVSSGKEQDAAIKIDFKNACLKSLTPQSGKIKITDGRLSFKADLT
ARGNSIYTYVNNLNGQFNVNSDNGKISGFDLNRIADAVGNAKNTEGVLRLINSSFNGG
STSFKNLIASGNITQGKLNLNECSLDASPAKAKANGQINLPQYMMDISASVTIADLPP
IAVKLYGFINNPQHKLDIQALQTYLVNNVFNSVIKDLKSGEKKPENIIKDALGLSKKK
DTNAEEQSSSQHENKQADPVNKLLHKGLKKLF"
misc_feature complement(470529..472880)
/locus_tag="A1C_02600"
/note="Uncharacterized protein involved in outer membrane
biogenesis [Cell envelope biogenesis, outer membrane];
Region: AsmA; COG2982"
/db_xref="CDD:32801"
misc_feature complement(470736..471266)
/locus_tag="A1C_02600"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:205680"
gene 473317..473514
/locus_tag="A1C_02605"
/db_xref="GeneID:5645645"
CDS 473317..473514
/locus_tag="A1C_02605"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_001493326.1"
/db_xref="GI:157825606"
/db_xref="GeneID:5645645"
/translation="MVSIAHSLELKGIEKGRQKGVKICEMKLAEMAKRMFRKNNPLDE
IIEFTGFTKKSIKELQKQRQK"
misc_feature <473317..473493
/locus_tag="A1C_02605"
/note="conserved hypothetical protein (putative
transposase or invertase); Region: T_den_put_tspse;
TIGR01784"
/db_xref="CDD:130844"
gene complement(473536..474033)
/gene="rimM"
/locus_tag="A1C_02610"
/db_xref="GeneID:5645646"
CDS complement(473536..474033)
/gene="rimM"
/locus_tag="A1C_02610"
/note="Essential for efficient processing of 16S rRNA"
/codon_start=1
/transl_table=11
/product="16S rRNA-processing protein RimM"
/protein_id="YP_001493327.1"
/db_xref="GI:157825607"
/db_xref="GeneID:5645646"
/translation="MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNES
REDIHIQLISQNAKGELICRFNDITTRNEAENLKGYKIFCLRASLPEPAEDEFYIADL
NHLPVLDPNHKEIGKIKNILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLN
YQRGV"
misc_feature complement(473557..474033)
/gene="rimM"
/locus_tag="A1C_02610"
/note="16S rRNA-processing protein RimM; Provisional;
Region: rimM; PRK00122"
/db_xref="CDD:178881"
misc_feature complement(473773..474009)
/gene="rimM"
/locus_tag="A1C_02610"
/note="RimM N-terminal domain; Region: RimM; pfam01782"
/db_xref="CDD:201971"
misc_feature complement(473551..473754)
/gene="rimM"
/locus_tag="A1C_02610"
/note="PRC-barrel domain; Region: PRC; pfam05239"
/db_xref="CDD:203221"
gene 476738..476980
/locus_tag="A1C_02625"
/db_xref="GeneID:5645647"
CDS 476738..476980
/locus_tag="A1C_02625"
/EC_number="3.1.11.6"
/note="catalyzes the bidirectional exonucleolytic cleavage
of DNA"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII small subunit"
/protein_id="YP_001493328.1"
/db_xref="GI:157825608"
/db_xref="GeneID:5645647"
/translation="MTNTKTLEENISFESALKELEEIVKKIDNGQESLEMAVNSFERG
ILLKNHCEKKLKEARLKIEKITKLADSTVVLEETEV"
misc_feature 476741..476977
/locus_tag="A1C_02625"
/note="exodeoxyribonuclease VII small subunit;
Provisional; Region: PRK00977"
/db_xref="CDD:179195"
gene 477518..477718
/locus_tag="A1C_02630"
/db_xref="GeneID:5645648"
CDS 477518..477718
/locus_tag="A1C_02630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493329.1"
/db_xref="GI:157825609"
/db_xref="GeneID:5645648"
/translation="MYAVSNGFVLIYLLGNLNKVQEVVAAESIVLMRIADNVGWFPYE
IRHAIYLDIKNYIKDVMHVNGN"
misc_feature 477518..>477700
/locus_tag="A1C_02630"
/note="Protein of unknown function (DUF4239); Region:
DUF4239; pfam14023"
/db_xref="CDD:206193"
gene complement(478114..478488)
/locus_tag="A1C_02635"
/db_xref="GeneID:5645649"
CDS complement(478114..478488)
/locus_tag="A1C_02635"
/note="COG2094 3-methyladenine DNA glycosylase"
/codon_start=1
/transl_table=11
/product="3-methyladenine DNA glycosylase"
/protein_id="YP_001493330.1"
/db_xref="GI:157825610"
/db_xref="GeneID:5645649"
/translation="MYYCLNFVTETECFHAATLIRGVHVISHNDLYTADTSKVGSQIN
GEPAQRIIIREHRRIPQFDVPNLEVSKVYLNGPGKLCKYLGINISHNKCDLINNNEFF
VSDIGLKLPYSTTTRIGITRHG"
misc_feature complement(478123..>478488)
/locus_tag="A1C_02635"
/note="Carboxy-terminal domain of Formyltransferase and
similar domains; Region: FMT_C_like; cl14785"
/db_xref="CDD:209896"
gene complement(479020..479268)
/locus_tag="A1C_02640"
/db_xref="GeneID:5645650"
CDS complement(479020..479268)
/locus_tag="A1C_02640"
/note="COG0759 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493331.1"
/db_xref="GI:157825611"
/db_xref="GeneID:5645650"
/translation="MSKILLLIVKFYQYFISPLLGNNCRFHPSCSEYAKEAITIYGST
KGLWITFKRIIKCQPFCNGGYDNVPISIKNYKSLNKKI"
misc_feature complement(479023..479268)
/locus_tag="A1C_02640"
/note="hypothetical protein; Provisional; Region:
PRK14388"
/db_xref="CDD:172864"
gene complement(479261..479764)
/locus_tag="A1C_02645"
/db_xref="GeneID:5644977"
CDS complement(479261..479764)
/locus_tag="A1C_02645"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit E"
/protein_id="YP_001493332.1"
/db_xref="GI:157825612"
/db_xref="GeneID:5644977"
/translation="MNTKITNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQ
NGGWLPVPAIEYVANMLEMPYMRAYEVATFYTMFNLKRVGKYHIHVCTTTPCWLRGSD
DIMKICKKKLGIKLKETTEDQKFTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKL
IDRLQNE"
misc_feature complement(479270..479713)
/locus_tag="A1C_02645"
/note="Respiratory-chain NADH dehydrogenase 24 Kd subunit;
Region: Complex1_24kDa; pfam01257"
/db_xref="CDD:144740"
misc_feature complement(479273..479512)
/locus_tag="A1C_02645"
/note="TRX-like [2Fe-2S] Ferredoxin (Fd) family,
NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily;
Nuo, also called respiratory chain Complex 1, is the entry
point for electrons into the respiratory chains of
bacteria and the mitochondria of eukaryotes; Region:
TRX_Fd_NuoE; cd03064"
/db_xref="CDD:48613"
misc_feature complement(order(479372..479380,479498..479500,
479504..479506))
/locus_tag="A1C_02645"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48613"
misc_feature complement(order(479357..479359,479369..479371,
479477..479479,479492..479494))
/locus_tag="A1C_02645"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:48613"
gene complement(479801..480985)
/locus_tag="A1C_02650"
/db_xref="GeneID:5644978"
CDS complement(479801..480985)
/locus_tag="A1C_02650"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit D"
/protein_id="YP_001493333.1"
/db_xref="GI:157825613"
/db_xref="GeneID:5644978"
/translation="MDTMTNNTKTITLNLGPQHPATHGVLRLILEMDGEIVNNADPHI
GLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIR
VLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNYFRP
GGVAEDLPDGLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWG
FSGPMLRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIK
QCIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAP
KGEFGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEI
DR"
misc_feature complement(479804..480961)
/locus_tag="A1C_02650"
/note="NADH dehydrogenase subunit D; Validated; Region:
PRK06075"
/db_xref="CDD:180385"
misc_feature complement(479804..480616)
/locus_tag="A1C_02650"
/note="Respiratory-chain NADH dehydrogenase, 49 Kd
subunit; Region: Complex1_49kDa; pfam00346"
/db_xref="CDD:144077"
gene complement(481064..481210)
/locus_tag="A1C_02655"
/db_xref="GeneID:5644979"
CDS complement(481064..481210)
/locus_tag="A1C_02655"
/note="COG2827 Predicted endonuclease containing a URI
domain"
/codon_start=1
/transl_table=11
/product="endo/excinuclease amino terminal
domain-containing protein"
/protein_id="YP_001493334.1"
/db_xref="GI:157825614"
/db_xref="GeneID:5644979"
/translation="MLVFYEIHETMDSAITREKQIKSDSRATKLNLIEQMNVNWKDLY
NEII"
misc_feature complement(481082..>481207)
/locus_tag="A1C_02655"
/note="GIY-YIG nuclease domain superfamily; Region:
GIY-YIG_SF; cl15257"
/db_xref="CDD:210056"
misc_feature complement(481157..481159)
/locus_tag="A1C_02655"
/note="catalytic site [active]"
/db_xref="CDD:198380"
misc_feature complement(481157..481159)
/locus_tag="A1C_02655"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198380"
gene complement(481210..481332)
/locus_tag="A1C_02660"
/db_xref="GeneID:5644980"
CDS complement(481210..481332)
/locus_tag="A1C_02660"
/EC_number="1.6.5.3"
/note="COG2827 Predicted endonuclease containing a URI
domain"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit C"
/protein_id="YP_001493335.1"
/db_xref="GI:157825615"
/db_xref="GeneID:5644980"
/translation="MYIANKRNGTIDVGVTSNIIKRIYEHKNNTTNGVSKNTIV"
misc_feature complement(<481225..481329)
/locus_tag="A1C_02660"
/note="GIY-YIG nuclease domain superfamily; Region:
GIY-YIG_SF; cl15257"
/db_xref="CDD:210056"
misc_feature complement(order(481255..481257,481267..481269,
481291..481293,481297..481299,481327..481329))
/locus_tag="A1C_02660"
/note="active site"
/db_xref="CDD:198380"
misc_feature complement(order(481291..481299,481327..481329))
/locus_tag="A1C_02660"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198380"
misc_feature complement(481267..481269)
/locus_tag="A1C_02660"
/note="catalytic site [active]"
/db_xref="CDD:198380"
gene complement(481414..482037)
/locus_tag="A1C_02665"
/db_xref="GeneID:5644981"
CDS complement(481414..482037)
/locus_tag="A1C_02665"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit C"
/protein_id="YP_001493336.1"
/db_xref="GI:157825616"
/db_xref="GeneID:5644981"
/translation="MTLDKFIEKLADKSSILITPVMVKDYLAYKVELNFLLPFLKALK
ESAELRFTVLTDLFGADFPKRDKRFEVVYNLLSLKLNKRLIIKVYISEEETIPSAMNI
FSTACWYEREVYDMYGVNFDGNDDKRRILTDYEFDGHPLRKDFPLTGYTQVKYDEQLK
QVAYEPVNCDIEYREFDFSSHWHSQTYVLPGDEKAAYVIPKKTEAQK"
misc_feature complement(481453..482037)
/locus_tag="A1C_02665"
/note="NADH dehydrogenase subunit C; Provisional; Region:
PRK06074"
/db_xref="CDD:180384"
misc_feature complement(481591..481959)
/locus_tag="A1C_02665"
/note="NADH (or F420H2) dehydrogenase, subunit C; Region:
NuoC_fam; TIGR01961"
/db_xref="CDD:200146"
gene complement(482015..482539)
/locus_tag="A1C_02670"
/db_xref="GeneID:5644982"
CDS complement(482015..482539)
/locus_tag="A1C_02670"
/EC_number="1.6.5.3"
/note="The point of entry for the majority of electrons
that traverse the respiratory chain eventually resulting
in the reduction of oxygen"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit B"
/protein_id="YP_001493337.1"
/db_xref="GI:157825617"
/db_xref="GeneID:5644982"
/translation="MQHSFYQEDELLNNEISNRGFLLTKIDDIIGWARAHSLWPMTFG
LACCAVEMMQAASSRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAV
PKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKI
KRTTGFKYDARQIH"
misc_feature complement(482021..482503)
/locus_tag="A1C_02670"
/note="NADH dehydrogenase subunit B; Validated; Region:
PRK06411"
/db_xref="CDD:180557"
misc_feature complement(482051..482482)
/locus_tag="A1C_02670"
/note="NADH-quinone oxidoreductase, B subunit; Region:
nuoB_fam; TIGR01957"
/db_xref="CDD:162625"
gene complement(482542..482913)
/locus_tag="A1C_02675"
/db_xref="GeneID:5644983"
CDS complement(482542..482913)
/locus_tag="A1C_02675"
/EC_number="1.6.5.3"
/note="Catalyzes the transfer of electrons from NADH to
quinone"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit A"
/protein_id="YP_001493338.1"
/db_xref="GI:157825618"
/db_xref="GeneID:5644983"
/translation="MLQNSELLQEYLPIAVFFGIAVLVSGLIMILPNLLSTKHYNKDK
LEPYECGFKPFSDARSKFDIRFYLVAILFIIFDIEIAFLVPWAISLNMIGKIGFFSMI
FFLFVLTIGFIYEWKKGALDW"
misc_feature complement(482545..482901)
/locus_tag="A1C_02675"
/note="NADH:ubiquinone oxidoreductase subunit A;
Validated; Region: PRK06602"
/db_xref="CDD:180638"
gene complement(483013..484239)
/locus_tag="A1C_02680"
/db_xref="GeneID:5645249"
CDS complement(483013..484239)
/locus_tag="A1C_02680"
/note="COG3307 Lipid A core - O-antigen ligase and related
enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493339.1"
/db_xref="GI:157825619"
/db_xref="GeneID:5645249"
/translation="MINYLTATLIFLIPSLGMVAGLSVAATVTIFLLMLFLRGINSHY
EQLKGAWPPHKAGLLRLLRQSLQFFLAMTIKTELLFVAWCFISCLFGIHPINSLVTFA
QVFILLFLGFIVSHSAPFRNRLQFKKALILGILTAILLFFIEYSSHGFLTRMSKTSFG
LYMLDRGCALLSITSWVAIIILLSSCKRRNALMLYILVLYLLSISDSLASFVGFSISG
VIFILARVIKPIFFKLIAISLITGTLLFPVIAKQIEPQDLSKKYLATQPSAAHRLFIW
HFVANKIIEKPILGYGFASSKHIKVNNSAMINHNGEKWHPLPLHPHNNILQITLELGT
IGLILFLCLVYKYLKQISNIENNNFKAISYACFINYYIIGMISYNIWQIWWISSGILV
PVLMKLLVKPDIVVDN"
misc_feature complement(483070..484008)
/locus_tag="A1C_02680"
/note="Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane]; Region: RfaL;
COG3307"
/db_xref="CDD:33116"
misc_feature complement(483271..483615)
/locus_tag="A1C_02680"
/note="O-Antigen ligase; Region: Wzy_C; cl04850"
/db_xref="CDD:208260"
gene complement(484236..484718)
/locus_tag="A1C_02685"
/db_xref="GeneID:5645250"
CDS complement(484236..484718)
/locus_tag="A1C_02685"
/note="COG4765 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493340.1"
/db_xref="GI:157825620"
/db_xref="GeneID:5645250"
/translation="MKLLRIVFIAIICAYSSVFAENLESVTTTEDIENDVFIPLDENH
PILNPNDNINDSSEFKNYTNGKIIALNKITATSEEINFKVGEEKYFGNIKIKLHKCIK
NLDPYNEDNYLLMTITEYTIDEDPNLLFQGWMTSSSISLSTFEHPIYEIFVKDCFELK
"
misc_feature complement(484245..484718)
/locus_tag="A1C_02685"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4765"
/db_xref="CDD:34378"
gene 484894..485184
/locus_tag="A1C_02690"
/db_xref="GeneID:5645251"
CDS 484894..485184
/locus_tag="A1C_02690"
/note="COG5410 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493341.1"
/db_xref="GI:157825621"
/db_xref="GeneID:5645251"
/translation="MLHSKEFLNSILRQDFHSFIIKVFNTINQGAEYYPSKHIRIITD
YLNAVQSCDINRLIINIPPRSLKSICVSVAWPAYRFGVNPPKGLLLPAILKY"
misc_feature 484894..>485160
/locus_tag="A1C_02690"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5410"
/db_xref="CDD:34969"
gene 485337..485435
/locus_tag="A1C_02695"
/db_xref="GeneID:5645252"
CDS 485337..485435
/locus_tag="A1C_02695"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493342.1"
/db_xref="GI:157825622"
/db_xref="GeneID:5645252"
/translation="MATGDGGDILIIDDPHNHIQIHFYKISKQVID"
gene 485768..485920
/locus_tag="A1C_02700"
/db_xref="GeneID:5645253"
CDS 485768..485920
/locus_tag="A1C_02700"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493343.1"
/db_xref="GI:157825623"
/db_xref="GeneID:5645253"
/translation="MEDISFYATLLEKFDYFMQRWDTAIKISEDSDYSVCTIFGIFEQ
KYYLVS"
misc_feature 485768..>485917
/locus_tag="A1C_02700"
/note="Phage-related terminase [General function
prediction only]; Region: COG5362; cl02216"
/db_xref="CDD:141379"
gene 486454..486528
/locus_tag="A1C_t06903"
/db_xref="GeneID:5645254"
tRNA 486454..486528
/locus_tag="A1C_t06903"
/product="tRNA-Cys"
/db_xref="GeneID:5645254"
gene 486550..487470
/gene="xerD"
/locus_tag="A1C_02705"
/db_xref="GeneID:5645255"
CDS 486550..487470
/gene="xerD"
/locus_tag="A1C_02705"
/note="site-specific tyrosine recombinase which cuts and
rejoins DNA molecules; binds cooperatively to specific DNA
consensus sites; forms a heterotetrameric complex with
XerC; XerCD exhibit similar sequences; essential to
convert chromosome dimers to monomers during cell division
and functions during plasmid segregation; XerD
specifically exchanges the bottom strands; cell division
protein FtsK may regulate the XerCD complex; enzyme from
Streptococcus group has unusual active site motifs"
/codon_start=1
/transl_table=11
/product="site-specific tyrosine recombinase XerD"
/protein_id="YP_001493344.1"
/db_xref="GI:157825624"
/db_xref="GeneID:5645255"
/translation="MEFISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSAL
NITTANVRDWIEYLANNDLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQ
NKLPEILSIDQIKSLLEYCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTN
KTSKGEVRKIFSVLGKGNKERVIVINEQAVISIAKYLAIRDIFVNKAKPKNLIYLFPS
SALTGYMTRQNFAILLKSAALYANLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLG
HSDISTTQIYTHLQTHHLKKALLHHPLNTN"
misc_feature 486550..487407
/gene="xerD"
/locus_tag="A1C_02705"
/note="site-specific tyrosine recombinase XerD; Reviewed;
Region: xerD; PRK00283"
/db_xref="CDD:178959"
misc_feature 486559..487407
/gene="xerD"
/locus_tag="A1C_02705"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature order(486982..486987,487075..487077,487294..487302,
487405..487407)
/gene="xerD"
/locus_tag="A1C_02705"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
misc_feature order(486982..486984,487075..487077,487300..487302,
487309..487311,487378..487380,487405..487407)
/gene="xerD"
/locus_tag="A1C_02705"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature order(486982..486984,487300..487302,487309..487311,
487378..487380,487405..487407)
/gene="xerD"
/locus_tag="A1C_02705"
/note="active site"
/db_xref="CDD:29495"
gene 487553..488614
/locus_tag="A1C_02710"
/db_xref="GeneID:5645518"
CDS 487553..488614
/locus_tag="A1C_02710"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493345.1"
/db_xref="GI:157825625"
/db_xref="GeneID:5645518"
/translation="MKLKEMMLACISNPVEIEGQYPRFAQKKELGLNVCSGLGKINLE
REELCDEASRSLVNLVIQAIDNKNFDLGILQKMQQAFSIASKQKQRKAFISFLDKELN
QEQLHKLSQAIMENANELMPDDDPNFVCRTSNNKVFQEILLLEAKGNNFSVEVDRKGT
LKINFPSKLLELYKLLVDNFYLKNFEKEELQKKLYHELFPDCQIPFEELIKKEELQKK
LYHELFPDCQIPFEELIEEVSFFENFMQCLKEFYIKNSLAQSIMFLLVSEYIRESGVS
EELLELEVFKKLFEEKMSLYGTSDDFKLSVVQHVLNDKNGVYISNLTSSNILELVTHT
QPDCEIVSIEILGESKSPV"
gene 488726..489889
/locus_tag="A1C_02715"
/db_xref="GeneID:5645519"
CDS 488726..489889
/locus_tag="A1C_02715"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493346.1"
/db_xref="GI:157825626"
/db_xref="GeneID:5645519"
/translation="MATKNKKTTMSTETKNLANLVIKEIGNENFNFDVLQKMQEAFRT
ASKQKQREAFISVLDKKLNKEQLHKLNQAIMENANELMPDNDPNFVCRTSNNKVFQEI
LLLEAKRSGMEAKFNDKGELQSLDVKDITHEILDHYRVLQEKFYHKRNSKDLIDSRIA
QSINFLLYAPLFRESEIYIKLGLKAAEIEREIQDPNGKYVKQLVDAKIGTNINLNTKE
NLDNKTNEEKETKISSIIEKAITKLEKDKKVSIEYKKRKDIKRHLSKSLEGASDYILT
FKKNDLVDIIYQELDKRQTWWSKIANYIGIKSYSISKENLEKIGRVINSEIKNSHTHL
NGEVQAQLKQISKELNRLNNPVLTSEVKKVHAESKKLPVPAKPEHLKKRAHGL"
STS 489235..490564
/standard_name="ha2747"
/db_xref="UniSTS:515592"
gene complement(490076..490858)
/locus_tag="A1C_02720"
/db_xref="GeneID:5645520"
CDS complement(490076..490858)
/locus_tag="A1C_02720"
/EC_number="1.3.1.10"
/note="Catalyzes a key regulatory step in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="enoyl-(acyl carrier protein) reductase"
/protein_id="YP_001493347.1"
/db_xref="GI:157825627"
/db_xref="GeneID:5645520"
/translation="MTTGLLQGKKGLITGIANNMSISWAIAQLTKKHGAELWFTYQSE
VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKAKWYSFDFLLHGMAFADKNEL
KGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPNYNVM
GISKAALEASVKYLANDLGKNNIRVNAISAGPIKTLASSAIGDFSTMLKSHATNAPLK
RNTTQEDVGGAAVYLFSNLSQGVTGEIHYVDCGYNIMGSHKL"
misc_feature complement(490091..490852)
/locus_tag="A1C_02720"
/note="Enoyl-[acyl-carrier-protein]; Region: FabI;
COG0623"
/db_xref="CDD:30968"
misc_feature complement(490091..490837)
/locus_tag="A1C_02720"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature complement(order(490265..490276,490280..490291,
490367..490369,490388..490390,490418..490426,
490499..490501,490571..490582,490658..490666,
490733..490735,490793..490798,490808..490816))
/locus_tag="A1C_02720"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature complement(order(490091..490102,490106..490144,
490148..490150,490163..490165,490172..490177,
490184..490186,490202..490213,490229..490231,
490238..490240,490319..490324,490328..490345,
490349..490354,490361..490366,490373..490378,
490385..490390,490394..490405,490409..490414,
490460..490462,490469..490471,490481..490483,
490490..490495,490502..490507,490514..490519,
490526..490546,490640..490642,490649..490660,
490763..490765))
/locus_tag="A1C_02720"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(490325..490333,490337..490345,
490349..490354,490361..490366,490373..490378,
490385..490390,490397..490405,490409..490414,
490460..490462,490469..490474,490481..490483,
490490..490495,490502..490507,490514..490519,
490526..490546,490649..490660))
/locus_tag="A1C_02720"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(490247..490249,490256..490258,
490265..490270,490367..490369,490379..490381,
490388..490390,490418..490420,490568..490570,
490574..490576))
/locus_tag="A1C_02720"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(490367..490369,490379..490381,
490418..490420,490496..490498))
/locus_tag="A1C_02720"
/note="active site"
/db_xref="CDD:187630"
gene 490941..492431
/gene="lnt"
/locus_tag="A1C_02725"
/db_xref="GeneID:5645521"
CDS 490941..492431
/gene="lnt"
/locus_tag="A1C_02725"
/note="Transfers the fatty acyl group on membrane
lipoproteins"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_001493348.1"
/db_xref="GI:157825628"
/db_xref="GeneID:5645521"
/translation="MYKSKIICLLLGMLSGLVFAPTFFIPALLTLSYLCYIVQKSKNW
KEAVKFGYVFGFGHFLSGIYWVSIGVSVYIADFWWAIPFALFGLPIVLAFFISASCML
SFFAKNNKYYQFIFCLCWVLFEWIRSWIFTGLPWNLIGYAFSFSDILIQPLSIIGIYG
LSFIVIYISTSAYPLFSKQFTQLKILVSSSVIILTIIVIHGAVRLSNNPTNFTDLKVR
LVQPSIPQTEKWNEEEFWHNLMLHINLSENAEPTDLIIWSEAALVVPDDIPQVKSELL
KMLNATNAILITGGISDNKKQGDEFELYSAMYALDKNDHKLFEYHKSHLVPFGEYMPL
KKILPFKKLTHGLIDYKEGDGGFVYLEKYNLKIKPLICYESIFPDFVRTNNEIADVII
NITNDAWYGKSSGPYQHFHISRNRAVESGLPMIRVANNGISAIVDPFGRTINKLNLNE
INYTQGLIPKKLTSPTIFSQFGNSTILLFIVFILFINYLLASILDN"
misc_feature 490941..492359
/gene="lnt"
/locus_tag="A1C_02725"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
lnt; PRK00302"
/db_xref="CDD:178970"
misc_feature 491583..492359
/gene="lnt"
/locus_tag="A1C_02725"
/note="Apolipoprotein N-acyl transferase (class 9
nitrilases); Region: ALP_N-acyl_transferase; cd07571"
/db_xref="CDD:143595"
misc_feature order(491715..491717,491904..491906,491916..491918,
491928..491930,492054..492059,492063..492068,
492126..492128)
/gene="lnt"
/locus_tag="A1C_02725"
/note="putative active site [active]"
/db_xref="CDD:143595"
misc_feature order(491715..491717,491904..491906,492054..492056)
/gene="lnt"
/locus_tag="A1C_02725"
/note="catalytic triad [active]"
/db_xref="CDD:143595"
misc_feature order(491907..491918,491925..491927,491946..491954,
492057..492059,492063..492077,492084..492089,
492171..492176,492180..492188,492192..492197,
492231..492236)
/gene="lnt"
/locus_tag="A1C_02725"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143595"
gene 494104..495021
/locus_tag="A1C_02730"
/db_xref="GeneID:5645522"
CDS 494104..495021
/locus_tag="A1C_02730"
/note="COG2984 ABC-type uncharacterized transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493349.1"
/db_xref="GI:157825629"
/db_xref="GeneID:5645522"
/translation="MFISSIFQKFFSFLCVLFITAAIYADQKKVAIIVPLEHAAMTEI
ILGIKESLKDIDAEIIVKNAHADSNILFAIIKQIRDQDIDVIIPIGTTASQTVISHIT
NKPIVCAAAMINSKNLPLVTGVNDEIKITDTLIKLPFLQNITLIYSSSEKVIPEVEML
KLYAGKNNISLHTVMIQNLNDMPVAVKNAPENTQSFIILKDHLIVSGMNIIKQEAFKR
RIPIIASDEGSVISGATIAVGVQEKQIGVEAGLMAKKILQGIEPQDIPFVDMQDLTLF
INLKSFVKQDILTKENLSVLPLTKKELTE"
misc_feature 494188..494997
/locus_tag="A1C_02730"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene 495026..495859
/locus_tag="A1C_02735"
/db_xref="GeneID:5645523"
CDS 495026..495859
/locus_tag="A1C_02735"
/note="COG4120 ABC-type uncharacterized transport system,
permease component"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_001493350.1"
/db_xref="GI:157825630"
/db_xref="GeneID:5645523"
/translation="MNILVTALEQSLIMLPLILGMYISYRILTLTDLTVDGTYVLGAA
VFARTISLGLFPALIFAVISGGIIGSIVSFMQKNNRINGLISGILANFMLYSMNLQIM
QRPNISVLGMPTLLSILDLDNWLIPLITINCLIISAVIILLKGKLGLFLRAFGFNKDL
LINLGKPAELYRMLGLSISNCLAALTGTLSAQINGFADINMGFGVALVGIGAIVIGRH
ILINANNFNAFKEIFSCFVGILFYFIALSLLLQIGIDPINLKLILGIVLFISLSTVSK
Q"
misc_feature 495056..495838
/locus_tag="A1C_02735"
/note="Transmembrane subunit (TM) of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which are involved in the uptake of
branched-chain amino acids (AAs), as well as TMs of
transporters involved in the uptake of...; Region:
TM_PBP1_branched-chain-AA_like; cd06574"
/db_xref="CDD:119320"
misc_feature 495500..495556
/locus_tag="A1C_02735"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119320"
gene 495976..496719
/locus_tag="A1C_02740"
/db_xref="GeneID:5645730"
CDS 495976..496719
/locus_tag="A1C_02740"
/note="COG1101 ABC-type uncharacterized transport system,
ATPase component"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_001493351.1"
/db_xref="GI:157825631"
/db_xref="GeneID:5645730"
/translation="MKPYLYAENIEFKVRERTESIIAETTLNIAKEEFIVILGHNGSG
KSTLAKILAGYLKPTSGKVFLDQIRIDKIPKAQKARTLVTLTQKAEERLFTELTLEEN
IIIWESRFPSNERLSFSEVLELTGAPQRFLPLLSQPLGKFSGGEKQIILLAFSIVHPP
KILFLDEHTANLDPKASLEVMKKTAEIIEQHKITSVMITHNLEDAVNYGKRLIVLDSG
KVVLDYLKPPGFSLKELREILQFNINIDG"
misc_feature 495976..496716
/locus_tag="A1C_02740"
/note="ABC-type uncharacterized transport system, ATPase
component [General function prediction only]; Region:
PhnK; COG1101"
/db_xref="CDD:31298"
misc_feature 495994..496638
/locus_tag="A1C_02740"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature 496090..496113
/locus_tag="A1C_02740"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature order(496099..496104,496108..496116,496234..496236,
496471..496476,496573..496575)
/locus_tag="A1C_02740"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature 496225..496236
/locus_tag="A1C_02740"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature 496399..496428
/locus_tag="A1C_02740"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature 496459..496476
/locus_tag="A1C_02740"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature 496483..496494
/locus_tag="A1C_02740"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature 496561..496581
/locus_tag="A1C_02740"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(496721..497020)
/locus_tag="A1C_02745"
/db_xref="GeneID:5645731"
CDS complement(496721..497020)
/locus_tag="A1C_02745"
/codon_start=1
/transl_table=11
/product="transposase IS982"
/protein_id="YP_001493352.1"
/db_xref="GI:157825632"
/db_xref="GeneID:5645731"
/translation="MVSHLILFAIWMTAQPYTVNLNHFILMIKLKLSVMIPDILINIA
KMGRSSVDWFVRFKLHMIINDKGEIIAVKIINGNVDDIIAFEAMVIKKVSNVIWH"
misc_feature complement(<496778..496894)
/locus_tag="A1C_02745"
/note="DDE superfamily endonuclease; Region: DDE_4;
cl15789"
/db_xref="CDD:211471"
gene complement(497779..498294)
/locus_tag="A1C_02750"
/db_xref="GeneID:5645732"
CDS complement(497779..498294)
/locus_tag="A1C_02750"
/note="COG1495 Disulfide bond formation protein DsbB"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493353.1"
/db_xref="GI:157825633"
/db_xref="GeneID:5645732"
/translation="MPFTTIINYIRKDSYKVLHLGLIAISIIALATAYIAEYIFHYTP
CPLCVYERFPYLTLIKICLTALIIRQLSKYTLIFIFLTILSSCILSTYHSFVERGIVQ
PSALCSSMIRIPKGLSIQHIKQMLYSQPITSCTKPAITICGISMTEYNLLLNIGLLIC
LLLVWFYPKKS"
misc_feature complement(497848..498186)
/locus_tag="A1C_02750"
/note="Disulfide bond formation protein DsbB; Region:
DsbB; pfam02600"
/db_xref="CDD:202302"
gene 498497..500086
/gene="lysK"
/locus_tag="A1C_02755"
/db_xref="GeneID:5645733"
CDS 498497..500086
/gene="lysK"
/locus_tag="A1C_02755"
/EC_number="6.1.1.6"
/note="class I; LysRS1; catalyzes a two-step reaction,
first charging a lysine molecule by linking its carboxyl
group to the alpha-phosphate of ATP, followed by transfer
of the aminoacyl-adenylate to its tRNA; in Methanosarcina
barkeri this enzyme charges both tRNA molecules for lysine
that exist in this organism (but the tRNALysUUU very
poorly) and in the presence of LysRS2 can charge tRNAPyl
with lysine"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_001493354.1"
/db_xref="GI:157825634"
/db_xref="GeneID:5645733"
/translation="MSEIWEDAIKSNAWPFVEAKKILDSLNGKTPEKGYLLFETGYGP
SGLPHIGTFGENARIVMVQKAFEQLSDIPTKLICFSDDMDGLRKVPSNIPHPEMVAGY
MDMPLTSIPDPFGECESYGHYMNAKLRSFLDKFGFKYEFYSSTNCYKAGMFDEMLIRV
LEQYDKIMELMLPTFREERKATYSPFMPVCLKTGKVLQVPIEKWDAKVGTVTYKDEAG
NYIEVPVTGGHCKLQWKPDFGMRWAALKVDYEMYGKDHLANARLYSEICRILGGKPPV
QLCYELFLDENGEKISKSKGNSISVDDWLKYAPVESMALFMYQNPTRAKRLFFDVIPK
NVDEYITFNQKYHLEEDRAKRFANPVYHIHHGNVPKIETFGITYVLLLNLTSVCNPSD
KTVLWGFISKYEPKATPNTSPYLDHLAEFAIRYYNDFIKAHKSYLAPSEKHNVILRDI
LDMLSDISDQTEAEGIQKAIYDIGMRAGYENLRDYFKDLYQILLGQSEGPRLGTFIKL
YGVQETKKLVAGKLTMLSRKK"
misc_feature 498518..500065
/gene="lysK"
/locus_tag="A1C_02755"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysK;
PRK00750"
/db_xref="CDD:179109"
misc_feature 498530..499588
/gene="lysK"
/locus_tag="A1C_02755"
/note="catalytic core domain of class I lysyl tRNA
synthetase; Region: LysRS_core_class_I; cd00674"
/db_xref="CDD:173900"
misc_feature order(498617..498619,498623..498625,498641..498643,
498650..498652,498659..498661,498737..498739,
498755..498757,499196..499198,499208..499210,
499262..499264,499334..499336,499370..499372)
/gene="lysK"
/locus_tag="A1C_02755"
/note="active site"
/db_xref="CDD:173900"
misc_feature 498641..498652
/gene="lysK"
/locus_tag="A1C_02755"
/note="HIGH motif; other site"
/db_xref="CDD:173900"
misc_feature 499364..499378
/gene="lysK"
/locus_tag="A1C_02755"
/note="KMSKS motif; other site"
/db_xref="CDD:173900"
gene 500147..501079
/locus_tag="A1C_02760"
/db_xref="GeneID:5645734"
CDS 500147..501079
/locus_tag="A1C_02760"
/note="COG0679 Predicted permeases"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="YP_001493355.1"
/db_xref="GI:157825635"
/db_xref="GeneID:5645734"
/translation="MNEIFCSTLPIFLITLLGSIIKNKWLTSEEFWRGIEKLSYFVLF
PAMLFNYVSTADLSVASIIKLVVALVISTILVSIGLIIYQKKYNIDTVQFTSMFQGSI
RYNSYIFFGVSSPLLGPSGLSIVAVISSYMIIFTNILSVMIFAYYIPNKSVTNTIRTN
FVLMMKLIVRNPLIIASLVGFVFNYSNLALHLVLKKTLDSLSNAALAIGMLNVGSGLN
FTIRQELLHNVVFTSFIKLVAFPLVSVIVLWLMSIEGIDRSVGILYSCLPCASTAYVL
SRQLDGDPDSMASIITLTTFFSVVTISIIMHVMG"
misc_feature 500147..501076
/locus_tag="A1C_02760"
/note="Predicted permeases [General function prediction
only]; Region: COG0679"
/db_xref="CDD:31023"
gene 501203..503506
/locus_tag="A1C_02765"
/db_xref="GeneID:5645735"
CDS 501203..503506
/locus_tag="A1C_02765"
/EC_number="1.1.1.40"
/note="NADP-dependent; catalyzes the oxidative
decarboxylation of malate to form pyruvate; decarboxylates
oxaloacetate"
/codon_start=1
/transl_table=11
/product="malic enzyme"
/protein_id="YP_001493356.1"
/db_xref="GI:157825636"
/db_xref="GeneID:5645735"
/translation="MDEMNRINYAEALEYHEKDKPGKIAITATKSLVTQQDLSLAYSP
GVAAPCLEIAKNLEDVYKYTARGNLVAVISNGTAVLGLGNLGAAASKPVMEGKAVLFK
KFADIDAIDLEVNTEDPEEFINAVKYLSYSFGGINLEDIKAPECFIIEEKLKSLMDIP
VFHDDQHGTAIITAAGLINAAYLTNRKLEDLKIVVNGAGAAAIACIDLLIALGADKSK
IILCDTKGVVYKGRLEGMNKWKELYASDTKFRTLAESLNNADVFIGLSVKGVVTKEMV
KRMANNPIIFAMANPDPEITPEDIKFVRDDAIIATGRSDYNNQINNVMGFPYIFRGAL
DVRATTINMEMKIAAAKAIADLARRPVPEEVSKAYSGRKMVFCKEYIIPVPFDPRLIT
VVAAAVAVAAIESGVAKVKDLSIGKYRKELGSRLNPTANYMNFLAEKIHNAPLKRIVF
AEGEEEEVISAALMMRDEKYGHPIIIGRVERIEATLKKIGQYVSLDGIQIMNASLTDS
LEKYIDYLYKRLQRKGYLYRDCAKLVETDKDIFAACIVACGDGDALLTGVTKSYIDSL
ENIMKVISPKHNRRILGYSIMIAKDNNIIISDNCITAYPNSLELAQIATQTAEIAKNM
GITPRVAFLSCSSFGNASKATTARICEAVNILDNFSKDKKELSGMKVDFEYDGEMSVK
VALDGDLRKLYKFCRLSGSANILIMPGLNSASISTELLQEFSSNSFIGPITNGFEKPV
QILQATATANEILKIATFACVEAIKEV"
misc_feature 501218..503497
/locus_tag="A1C_02765"
/note="bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed; Region:
PRK07232"
/db_xref="CDD:180898"
misc_feature 501263..501664
/locus_tag="A1C_02765"
/note="Malic enzyme, N-terminal domain; Region: malic;
pfam00390"
/db_xref="CDD:201200"
misc_feature 501698..502378
/locus_tag="A1C_02765"
/note="NAD(P) binding domain of malic enzyme (ME),
subgroup 2; Region: NAD_bind_2_malic_enz; cd05311"
/db_xref="CDD:133453"
misc_feature order(501794..501805,501869..501874,501995..502000,
502010..502012,502064..502072,502136..502138,
502160..502162,502166..502168)
/locus_tag="A1C_02765"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:133453"
misc_feature 502529..503482
/locus_tag="A1C_02765"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 503767..505716
/locus_tag="A1C_02770"
/db_xref="GeneID:5645736"
CDS 503767..505716
/locus_tag="A1C_02770"
/note="COG5307 SEC7 domain proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493357.1"
/db_xref="GI:157825637"
/db_xref="GeneID:5645736"
/translation="MDKMDSLVQNEVIKLFNDKPKSGIVRIKQWCADNNKDFAKETAQ
FFYEEKSNLNLEFVGDYLGTDGIDNKTVLESFTKQLNFKEKDYLESLRGFLQSFKLPG
EAQKIDRLVESFGTNYYEQNLNGEIKSKDAAYILAYQTIMLNTDLHNPSIVKPKKMTF
EQLKNNLKGTNESQNFNDTFLKKMYDGIKAKPFVLNFVDSSPGYEIYNISSQNDQTFK
KLNKFLEEKSTIQDVFSKLQNNNLTAEFKNPKTLLNKFTGYEGSVIVKDEKGGKATIQ
VYKPSVFSRWFLGEKSKIIIQPLSEEGKQPSEQSLTLASQITASFETKVTSVKATYDY
LKEDLKSRYENISNPKQELERASSIAELHKNIKEITEIVQQTNQQIPEKPLASKEIFE
DLTQAEIGIKPVEILIKSSYQQVKKPKFNSFIEELAWKSAQRKQNVDTPINQNKEPKI
QTDNHAKVLEELKQKQKALEDKKKGLEEKKSNSNITREERWKIVAELESINNQFQAIE
KEYNIINSASDREKKFDNKNNPSSPTKGAPTAADLQQQGALAAIKRMKEEKIKQQQAE
AANQASQITPTMSSGTIPVPPPMPGSGIPVPPPPPSIPNIVKKEAQDIGKQIPQEGDK
HKEGLVKAMEAQRKKIEKQNSGRGM"
misc_feature 503785..504345
/locus_tag="A1C_02770"
/note="Sec7 domain; Domain named after the S. cerevisiae
SEC7 gene product. The Sec7 domain is the central domain
of the guanine-nucleotide-exchange factors (GEFs) of the
ADP-ribosylation factor family of small GTPases (ARFs) .
It carries the exchange factor...; Region: Sec7; cd00171"
/db_xref="CDD:29116"
misc_feature order(504058..504081,504169..504210)
/locus_tag="A1C_02770"
/note="active site/putative ARF binding site [active]"
/db_xref="CDD:29116"
gene 506001..506198
/locus_tag="A1C_02775"
/db_xref="GeneID:5644883"
CDS 506001..506198
/locus_tag="A1C_02775"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_001493358.1"
/db_xref="GI:157825638"
/db_xref="GeneID:5644883"
/translation="MQEFAYLRKQYWGNHFWARGYMAVNLGNITDEMIQQYIDEQEGE
TINDDLFLIDYTSIYNISAYS"
misc_feature <506004..506123
/locus_tag="A1C_02775"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(506229..506444)
/locus_tag="A1C_02780"
/db_xref="GeneID:5644884"
CDS complement(506229..506444)
/locus_tag="A1C_02780"
/note="COG4374 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493359.1"
/db_xref="GI:157825639"
/db_xref="GeneID:5644884"
/translation="MAELDQKLNISFIQSKKMIAASINKIVALDFDQAIEIGCLEKET
EQFGLSLGDRASISSKINYRISYIYCR"
misc_feature complement(<506271..>506435)
/locus_tag="A1C_02780"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
gene complement(506437..506568)
/locus_tag="A1C_02785"
/db_xref="GeneID:5644885"
CDS complement(506437..506568)
/locus_tag="A1C_02785"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493360.1"
/db_xref="GI:157825640"
/db_xref="GeneID:5644885"
/translation="MNKYILDSSALLALFNSDTGSDKIEELLPLSIYVYSKYSRSNG"
misc_feature complement(<506473..506568)
/locus_tag="A1C_02785"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:209904"
gene complement(506561..506857)
/locus_tag="A1C_02790"
/db_xref="GeneID:5644886"
CDS complement(506561..506857)
/locus_tag="A1C_02790"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493361.1"
/db_xref="GI:157825641"
/db_xref="GeneID:5644886"
/translation="MYYFFGIYSIFTNFKNMHLEYNVTISENGKINIPAKIGDQLHLS
SRDQLMLILGQELTLIPLKNKIKELQALVKSKNKDNISLVDSIMESRSKEFNNE"
misc_feature complement(506669..506791)
/locus_tag="A1C_02790"
/note="Antidote-toxin recognition MazE; Region:
Antitoxin-MazE; cl00877"
/db_xref="CDD:212245"
gene 506954..508285
/locus_tag="A1C_02795"
/db_xref="GeneID:5644887"
CDS 506954..508285
/locus_tag="A1C_02795"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter"
/protein_id="YP_001493362.1"
/db_xref="GI:157825642"
/db_xref="GeneID:5644887"
/translation="MSNSAFLVAFFTTIIRYYDYALFGLSASILAQNFLPDIEQDKQL
LGFFAILSAAVIVRPLGSLIFGFIGDKYGRIKSIKISMFMSSISTGLIAITPSFEMIG
IFATVILTLCRMFFLASLAGEVDGIKIYVAEKTGDNRKNLNIGIVSCCSQIGALLAAI
AYYYVSNSSIWYLWRLNFFIGTIFGLFAILIRNFFKESREFLYYKSTIELNLERLRPD
EFKEEYAERTKVREHRRIPQNSLVLSFLNDARQIIKDNTLSFIIALLINGAIGGVYHF
LVIFLGVLLTKIAFVNHPEIRFMNIALTTTYGISAVFAGLLADKINPLKQITLTVFAS
IIVALGMQIMLYKQTFNMLCPVILIGLAAFYAVPLQVIVQSLFKTNIKMRLYSLSHSF
GGIILSSTTPFFSMLLWQNFKSLSLTLSLFIFLLIILMSTVLVLRKMLSLH"
misc_feature 506969..>507538
/locus_tag="A1C_02795"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 506990..508177
/locus_tag="A1C_02795"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(507011..507013,507020..507028,507032..507037,
507104..507106,507113..507118,507125..507127,
507137..507142,507146..507151,507287..507292,
507299..507304,507311..507316,507347..507349,
507383..507388,507395..507400,507416..507418)
/locus_tag="A1C_02795"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature 507575..507700
/locus_tag="A1C_02795"
/note="Rickettsial palindromic element RPE3 domain;
Region: RPE3; TIGR03775"
/db_xref="CDD:163487"
gene complement(508784..509023)
/locus_tag="A1C_02800"
/db_xref="GeneID:5644888"
CDS complement(508784..509023)
/locus_tag="A1C_02800"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493363.1"
/db_xref="GI:157825643"
/db_xref="GeneID:5644888"
/translation="MSNQPKSSLKYLQEQKKQTVEKQHENTQSDYITPKKNFEFENRA
EEIKENSTKNLINKFEKGCDSKITRYWTSPAAWDK"
gene complement(509120..509302)
/locus_tag="A1C_02805"
/db_xref="GeneID:5644889"
CDS complement(509120..509302)
/locus_tag="A1C_02805"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001493364.1"
/db_xref="GI:157825644"
/db_xref="GeneID:5644889"
/translation="MVLTSQKDERMNDILDKLQKISTNCSKISNSDDKFHKKIKESFV
EINTTLKNIIEYKDQK"
gene complement(511645..512589)
/locus_tag="A1C_02825"
/db_xref="GeneID:5644635"
CDS complement(511645..512589)
/locus_tag="A1C_02825"
/EC_number="1.1.1.37"
/note="Catalyzes the reversible oxidation of malate to
oxaloacetate"
/codon_start=1
/transl_table=11
/product="malate dehydrogenase"
/protein_id="YP_001493365.1"
/db_xref="GI:157825645"
/db_xref="GeneID:5644635"
/translation="MKKNPKISLIGSGNIGGTLAHLISLRELGDIVLFDVAEGVPQGK
ALDLMQASTIAGSDIKITGTNDYKDIEGSDAIIITAGLPRKPGMSRDDLISINTGIMK
NVAENVKKYAPDAFVIVITNPLDVMVYVMLKASGLPHNQVIGMAGVLDSSRFNLFLAE
EFKVSVSNVNSTVLGGHGDAMVPLARYSTISGIPIPDLIKMGLSSNENIEKIIDRTRN
GGGDIVALLKTGSAYYAPAASAIEMLEAYLKDKRQMLTCAAYLQGEYGVHDLYVGVPI
IIGKEGVIKVVELQLTKEEKTLFDKSVEGVKTLIETIQ"
misc_feature complement(511651..512583)
/locus_tag="A1C_02825"
/note="malate dehydrogenase; Reviewed; Region: PRK06223"
/db_xref="CDD:180477"
misc_feature complement(511657..512571)
/locus_tag="A1C_02825"
/note="L-lactate dehydrogenase-like malate dehydrogenase
proteins; Region: LDH-like_MDH; cd01339"
/db_xref="CDD:133424"
misc_feature complement(order(512059..512061,512143..512145,
512155..512157,512224..512226,512230..512232,
512290..512292,512344..512355,512482..512487,
512545..512553))
/locus_tag="A1C_02825"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133424"
misc_feature complement(order(511864..511866,511873..511878,
511885..511893,511912..511914,512119..512121,
512125..512127,512131..512136,512416..512424,
512428..512430,512440..512445,512449..512454,
512461..512463,512470..512475,512515..512517,
512524..512526,512539..512541))
/locus_tag="A1C_02825"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133424"
misc_feature complement(order(511723..511725,511750..511752,
511828..511839,511843..511845,512011..512019,
512023..512025,512074..512076,512080..512082,
512086..512088,512101..512103,512416..512418,
512422..512424))
/locus_tag="A1C_02825"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:133424"
misc_feature complement(order(511894..511896,511930..511932,
512059..512061,512131..512133,512224..512226,
512320..512322))
/locus_tag="A1C_02825"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133424"
gene complement(513830..515353)
/locus_tag="A1C_02830"
/db_xref="GeneID:5644636"
CDS complement(513830..515353)
/locus_tag="A1C_02830"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
