LOCUS NC_010831 2736403 bp DNA circular CON 10-JUN-2013
DEFINITION Chlorobium phaeobacteroides BS1 chromosome, complete genome.
ACCESSION NC_010831
VERSION NC_010831.1 GI:189499000
DBLINK Project: 58131
BioProject: PRJNA58131
KEYWORDS .
SOURCE Chlorobium phaeobacteroides BS1
ORGANISM Chlorobium phaeobacteroides BS1
Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
Chlorobium/Pelodictyon group; Chlorobium.
REFERENCE 1 (bases 1 to 2736403)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z.,
Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chlorobium phaeobacteroides BS1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2736403)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2008) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2736403)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z.,
Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2008) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP001101.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634470
Source DNA and bacteria available from Donald A. Bryant
(dab14@psu.edu)
Contacts: Donald A. Bryant (dab14@psu.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by Pennsylvania State University
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2736403
/organism="Chlorobium phaeobacteroides BS1"
/mol_type="genomic DNA"
/strain="BS1"
/db_xref="taxon:331678"
gene 1..1476
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/db_xref="GeneID:6376197"
CDS 1..1476
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_001958471.1"
/db_xref="GI:189499001"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:6376197"
/translation="MPLQPSKELTAEQTTDATVTKGSAQTVWAACLDVLRNKLNNQAF
KTWFTPITPLLFSDNELTIEVPSQFFYEWIEENYSNQLKQALKETLGAEGKLMYSIVM
DKSQSQPVTIELPHQNIPKADSGDEICSDGHTSSDKAFVTRHRTKFESHLNPKYTFDT
LIRGDCNSLAFAASKSVSQNPGQNAFNPLVIYGGVGLGKTHMMQAVGNHVRESHRSEY
VLYVSSEKFAIDFVNAIQNGKIQEFSSFYRKMDVLIIDDIQFFAGKEKTQEEIFHIFN
TLHQSNKQIILSSDRPIKEIRGIEERLISRFNWGLSADIQPPDYETRKAIIQSKLEQS
GVTLDESVVEFIATNVTQNVREIEGCIVKLLASHSLFNQEIDLQFTKMTLKDIIRIQS
KKLSLETIEKAICTYFSITPNDLKGKSKKKEIAAGRQVAMYLSKELTGSSLKTIGLHF
GGRDHSTVIHGHNTIRNKVENSAETRGQIEELKKRIDIMSM"
misc_feature 73..264
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature 88..1365
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="chromosomal replication initiator protein DnaA;
Region: DnaA; TIGR00362"
/db_xref="CDD:232941"
misc_feature 547..933
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 577..600
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(580..603,766..768,868..870)
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 754..771
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 904..906
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1189..1458
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1258..1260,1282..1287,1306..1308,1324..1332,
1357..1371,1378..1380,1387..1392)
/gene="dnaA"
/locus_tag="Cphamn1_0001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1773..2897
/locus_tag="Cphamn1_0002"
/db_xref="GeneID:6373644"
CDS 1773..2897
/locus_tag="Cphamn1_0002"
/EC_number="2.7.7.7"
/note="KEGG: pvi:Cvib_0002 DNA polymerase III, beta
subunit;
TIGRFAM: DNA polymerase III, beta subunit;
PFAM: DNA polymerase III beta chain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_001958472.1"
/db_xref="GI:189499002"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:6373644"
/translation="MKFTTSIKHFQEAVNKAIQAIPNKVLDPRFENLHLNIDNRILTL
FATDGEISITATTDVDSSDKGDLGMRARTILDFLRSMYDTEVNFEIERQQMSEQGIVN
IATDKGRYTIPCSFESKAEKQEKTFDIEFDLTAGDLLNIIQKTTFACSIDGMRPAMMG
VLFEIEQNLLSAIATDGHRLVRFRKTCEVSLSEKQRIVIPARVLSILQKLVSEGNIRI
SIDSANRSIRFSTESLVLDAALIVEQYPNYEAVIPLENDKKLSIERASFYDSVKRVGR
FSNIGDIRFSISPSTMKLTAENINEGESAQEDLACSYDNEPIEIGFNSKFIEAALAHI
DDDSLIVELSTPTTAVILKPEKEKENENMMILVMPVRINN"
misc_feature 1773..2894
/locus_tag="Cphamn1_0002"
/note="DNA polymerase III subunit beta; Provisional;
Region: PRK14941"
/db_xref="CDD:184905"
misc_feature 1773..2885
/locus_tag="Cphamn1_0002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(1842..1844,1986..1988,2007..2009,2376..2378)
/locus_tag="Cphamn1_0002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(1989..1991,1998..2000,2091..2093,2097..2099,
2598..2600,2688..2693)
/locus_tag="Cphamn1_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(2295..2297,2301..2312,2739..2741,2874..2885)
/locus_tag="Cphamn1_0002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(2295..2297,2301..2306,2523..2525,2622..2624,
2661..2666,2748..2750,2874..2885)
/locus_tag="Cphamn1_0002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 2914..4005
/locus_tag="Cphamn1_0003"
/db_xref="GeneID:6373645"
CDS 2914..4005
/locus_tag="Cphamn1_0003"
/note="TIGRFAM: DNA replication and repair protein RecF;
PFAM: SMC domain protein;
KEGG: plt:Plut_0002 RecF protein"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein RecF"
/protein_id="YP_001958473.1"
/db_xref="GI:189499003"
/db_xref="InterPro:IPR001238"
/db_xref="InterPro:IPR003395"
/db_xref="GeneID:6373645"
/translation="MRLQEIQLVNFRKHKELVFAPSEAITVVYGPNGSGKTNILEAVH
YCTLARGLNRSLDRECLNFDAGYFLLQGTFADDRGIELSVKVSYEKNVEKKIFINSDE
LKKYSQLIGRIPCVTFSPMELSLVNGSPQERRRFMDNALSQTNKSYLDDLLQYRRVLQ
QRNTLLGAVNEKGMDRDSLEVWTEKLTQLACSIVSERLAFIERLFVYIEPVYEQLGLG
EVPGISYRSAAGRHANEIAPEELFSFMMQRFREIEHQEIFRKQSLAGPHRDDLVFRFN
DTDVKKYASQGQLRTFLIAVKLALHTLVSDTTGERPLFLLDDLFSELDGTRIEKILEQ
LEGAGQSIITATDRKDGSGVRSVSIEDLL"
misc_feature 2914..3963
/locus_tag="Cphamn1_0003"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:234608"
misc_feature 2920..>3456
/locus_tag="Cphamn1_0003"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 3001..3024
/locus_tag="Cphamn1_0003"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(3010..3015,3019..3027,3271..3273)
/locus_tag="Cphamn1_0003"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 3262..3273
/locus_tag="Cphamn1_0003"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature <3688..3966
/locus_tag="Cphamn1_0003"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 3763..3792
/locus_tag="Cphamn1_0003"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 3850..3867
/locus_tag="Cphamn1_0003"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 3874..3885
/locus_tag="Cphamn1_0003"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 3940..3960
/locus_tag="Cphamn1_0003"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 4109..4402
/locus_tag="Cphamn1_0004"
/db_xref="GeneID:6373646"
CDS 4109..4402
/locus_tag="Cphamn1_0004"
/note="KEGG: cte:CT2287 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958474.1"
/db_xref="GI:189499004"
/db_xref="GeneID:6373646"
/translation="MKSSRTPRKITDIVDDIYSIYGMNQAKEEHQALRVWNHIVGDTI
AKMTEVEKFVQGVLFVHVMNPSWRTELSFRKKNIISRLNKALGKNLVKDIVFK"
misc_feature 4133..4396
/locus_tag="Cphamn1_0004"
/note="Protein of unknown function (DUF721); Region:
DUF721; pfam05258"
/db_xref="CDD:218524"
gene 4548..5300
/locus_tag="Cphamn1_0005"
/db_xref="GeneID:6373647"
CDS 4548..5300
/locus_tag="Cphamn1_0005"
/note="PFAM: peptidase M50;
KEGG: acl:ACL_1148 membrane-associated metallopeptidase,
M50 family"
/codon_start=1
/transl_table=11
/product="peptidase M50"
/protein_id="YP_001958475.1"
/db_xref="GI:189499005"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR008915"
/db_xref="GeneID:6373647"
/translation="MVTAIFAFVCIFSLVVLVHELGHFLAARRVGVPVYEFSIGFPFS
PRIVTLFRHRETEFTLRLLPLGGFVSFSNEDDEEAEKLFGASRVSRALVMSGGSLFNL
VFAFLLFVPAFMAGEGVPLLSAASVSMQTIGTVASETIHLLFTLFTGSAGMENLSGPV
GIAVLAGQAASGGWVNLLFFTGFLSLSLGIMNMLPFPGLDGGQLAMLMIETVRNKPIG
ARAHQFINLAGIMLFIVLSLFVTWQDISRIIG"
sig_peptide 4548..4604
/locus_tag="Cphamn1_0005"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.660) with cleavage site probability 0.659 at
residue 19"
misc_feature 4560..>4838
/locus_tag="Cphamn1_0005"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature 4566..5279
/locus_tag="Cphamn1_0005"
/note="Peptidase family M50; Region: Peptidase_M50;
pfam02163"
/db_xref="CDD:216910"
misc_feature order(4602..4607,4614..4616)
/locus_tag="Cphamn1_0005"
/note="active site"
/db_xref="CDD:100084"
misc_feature <5115..5288
/locus_tag="Cphamn1_0005"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:245232"
misc_feature 5121..5132
/locus_tag="Cphamn1_0005"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene complement(5622..6899)
/locus_tag="Cphamn1_0006"
/db_xref="GeneID:6373648"
CDS complement(5622..6899)
/locus_tag="Cphamn1_0006"
/note="PFAM: beta-lactamase domain protein;
flavodoxin/nitric oxide synthase;
KEGG: pvi:Cvib_0005 beta-lactamase domain protein"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_001958476.1"
/db_xref="GI:189499006"
/db_xref="InterPro:IPR001279"
/db_xref="InterPro:IPR008254"
/db_xref="GeneID:6373648"
/translation="MRHSGYFYKVLINIEPCIMIDDKILPVTDDVTWIGVLDPGLVTF
DIVMETKYGTTYNSYFINAEKKAVVETTKERFWPTYLDKIKQVTDPSEIEYIIVDHTE
PDHSGNIKNLLSVAPDATVVGSANAIKFLNDLVGVEFKSLIVKDGDTLDLGNKTLRFI
NALNLHWPDAIYTWLEEDKVLFTCDSFGCHYCNEAMYDDLCGDFDDAFTYYFDAILKP
FSKYMLQAIDRIKDLDIQVICPGHGPILRSDWKKYVDLSKKYSQSAIALPNEKNILVA
YVSAYENTTLIAEKIAEGLRPACDFTVDVCDIENMHFSKIEEKIAHSSAIIVGSPTIN
QNIVSQIYQFFAAINPIRDKGKLAAAFGSYGWSGESIKIIESNFTNLKLKVFDQNLRI
KFKPDEKEFEECKAFGKAFAERLIEKNNIVCDM"
misc_feature complement(5661..6836)
/locus_tag="Cphamn1_0006"
/note="Uncharacterized flavoproteins [Energy production
and conversion]; Region: FpaA; COG0426"
/db_xref="CDD:223503"
misc_feature complement(6174..6731)
/locus_tag="Cphamn1_0006"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:214854"
misc_feature complement(5664..6083)
/locus_tag="Cphamn1_0006"
/note="Flavodoxin-like fold; Region: Flavodoxin_2;
cl00438"
/db_xref="CDD:241863"
gene complement(7022..9412)
/locus_tag="Cphamn1_0007"
/db_xref="GeneID:6373649"
CDS complement(7022..9412)
/locus_tag="Cphamn1_0007"
/note="PFAM: DNA polymerase B exonuclease; DNA polymerase
B region;
SMART: DNA-directed DNA polymerase B;
KEGG: cte:CT2284 DNA polymerase family B protein"
/codon_start=1
/transl_table=11
/product="DNA polymerase B region"
/protein_id="YP_001958477.1"
/db_xref="GI:189499007"
/db_xref="InterPro:IPR006133"
/db_xref="InterPro:IPR006134"
/db_xref="InterPro:IPR006172"
/db_xref="GeneID:6373649"
/translation="MSNNQQNNIVLNPLLFGKDEEEKIVGIHQLPDNKVRLYIRDENG
ISSRDEAFYPFFFLSEESLLDGFTPVNSEKFWLIKLQGGNFYRFLAIFKTQQNCRSAL
EYIASKSAVDSEEEDDSGFSSNLTYSRGDAVTQYLLQSGKTLFKGMVLEDLHRMQLDI
ETYYKPEKNTRSKVSIGSDPIIIISLSDNKGWEHSIHSRDISEKELLEKLISIIRLKD
PDVIEGHNIFSFDLPYIQRRCEILGVEFRIGRDGSIPRSYQSSIRFAERSIDYPFFDI
AGRHVVDTLFLVQNYDVAKRSMPGYGLKAAARYFGFASPDRTYVEYSDIADLWNNNPE
RLLNYALDDVRETQKLAAMLSGSNFYMTRMMPYTYAQTSRMGPAAKIEALFVRDYLKE
KHSLPKPETGQQHSGGFTEVFLKGILGPIVYADVESLYPSIMLFYDICPKSDERRIFP
EILSSLKELRFATKSKAKEEKEKGNKDLSDNYDAMQSSFKILINAMYGYLGYSAGIFN
DYEEADRVTTTGQEIARRMIKEFESRGCKVIEVDTDGILFVPPPHVQSQEDEIKLVKE
VSAVMPDGITIGYDGRYRKMISYLKKNYALLNYDGTIKLKGSSLISRSGEKFGRDFIR
KGFEKLLEEDVQGLHDLYVSFKEMIMNHSWSIEDFSRTESLKNTLEQYITDTSSGKRS
RSITYELALKHKLSVNKGDRITYYVAGSGLQSSHYEKGRLADDWDSSKPDENTQFYTK
RLDEFSQKFLPFFKPQDFSSIFSSDTLFSFSPEGIELIKEIRNKDTDSFDDNDIPF"
misc_feature complement(8357..8980)
/locus_tag="Cphamn1_0007"
/note="Uncharacterized bacterial subgroup of the DEDDy
3'-5' exonuclease domain of family-B DNA polymerases;
Region: DNA_polB_like2_exo; cd05785"
/db_xref="CDD:99828"
misc_feature complement(7775..8941)
/locus_tag="Cphamn1_0007"
/note="DNA polymerase type-B family; Region: POLBc;
smart00486"
/db_xref="CDD:214691"
misc_feature complement(order(8384..8386,8396..8398,8504..8509,
8720..8728,8735..8740,8927..8938))
/locus_tag="Cphamn1_0007"
/note="active site"
/db_xref="CDD:99828"
misc_feature complement(order(8384..8386,8396..8398,8720..8722,
8930..8932,8936..8938))
/locus_tag="Cphamn1_0007"
/note="catalytic site [active]"
/db_xref="CDD:99828"
misc_feature complement(order(8384..8386,8396..8398,8504..8509,
8723..8728,8735..8740,8927..8935))
/locus_tag="Cphamn1_0007"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99828"
misc_feature complement(7157..8206)
/locus_tag="Cphamn1_0007"
/note="DNA polymerase type-II B subfamily catalytic
domain. Bacteria contain five DNA polymerases (I, II, III,
IV and V). DNA polymerase II (Pol II) is a prototype for
the B-family of polymerases. The role of Pol II in a
variety of cellular activities, such as...; Region:
POLBc_Pol_II_B; cd05538"
/db_xref="CDD:99921"
misc_feature complement(order(7781..7783,7931..7933,7943..7945,
8033..8035,8123..8131,8138..8140))
/locus_tag="Cphamn1_0007"
/note="active site"
/db_xref="CDD:99921"
misc_feature complement(order(7781..7783,7787..7789))
/locus_tag="Cphamn1_0007"
/note="metal-binding site"
/db_xref="CDD:99921"
gene complement(9486..11357)
/locus_tag="Cphamn1_0008"
/db_xref="GeneID:6373650"
CDS complement(9486..11357)
/locus_tag="Cphamn1_0008"
/note="GidA; glucose-inhibited cell division protein A;
involved in the 5-carboxymethylaminomethyl modification
(mnm(5)s(2)U) of the wobble uridine base in some tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="YP_001958478.1"
/db_xref="GI:189499008"
/db_xref="InterPro:IPR002218"
/db_xref="InterPro:IPR004416"
/db_xref="GeneID:6373650"
/translation="MNIYDLIVAGAGHAGCEAALAGARMGLKCLLITSDFSAIARMSC
NPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADRTNYS
AYMRKIIEQETNIDLLQDSVIRIATNQGTCNGAIVSSGRTIEAKAVILSCGTFLNGLI
HIGMNHYPGGRTIAEPPVQGLTESLASLGFEHGRLKTGTPPRIDQRSVDYARVSVQPG
DRDPSPFSFSTESLAGRKQVECFLTATTENTHRILQEGFERSPLFSGKVQGVGPRYCP
SIEDKIHRFREKNSHHIFLEPEGFETNEMYVNGFSTSLPEDIQLKGLRSIPGLENVIM
MRPGYAIEYDYFYPFQLHPTLETKRIKNLYFAGQINGTSGYEEAAAQGIMAGINAALN
IRQKEPLILKRSEAYIGVLIDDLITKETNEPYRMFTSSAEHRIILRQDNADLRLMPFG
YACGLLSENTYRNLEIKRRNIASVKELISSIRVASDSINALLAEQGSPSISGSTRIAT
ILKRPKITLSSLVNAFPEVADQISEVTQDNTVLEQVEIDCKYEGYIQRERLMAEKIAR
LDSHRIPASFNYSALKGLSNEGKEKLSKVKPSTVGQASRILGVTPADISVLMVKIGR"
misc_feature complement(9489..11357)
/locus_tag="Cphamn1_0008"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:235362"
misc_feature complement(<11241..11348)
/locus_tag="Cphamn1_0008"
/note="Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism]; Region: GlpB; cl17730"
/db_xref="CDD:248284"
misc_feature complement(10122..>10433)
/locus_tag="Cphamn1_0008"
/note="tRNA (uracil-5-)-methyltransferase Gid; Reviewed;
Region: PRK05335"
/db_xref="CDD:235416"
misc_feature complement(9501..9713)
/locus_tag="Cphamn1_0008"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 12118..12492
/locus_tag="Cphamn1_0009"
/db_xref="GeneID:6373651"
CDS 12118..12492
/locus_tag="Cphamn1_0009"
/note="PFAM: cytochrome c class I;
KEGG: pvi:Cvib_0008 sulfide dehydrogenase
(flavocytochrome), cytochrome c subunit"
/codon_start=1
/transl_table=11
/product="cytochrome c class I"
/protein_id="YP_001958479.1"
/db_xref="GI:189499009"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR008169"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6373651"
/translation="MVKKITSWLSVGIISAAALVGCNSQPSGTQEPSQQSAAESEEVD
PRGQILALSCASCHGTDGKSVGIIPGFHGKSASYLKAALMEFKNDERYSTVMGRHAKG
YTDEEIVLIAEYFGSLSQQNSK"
sig_peptide 12118..12207
/locus_tag="Cphamn1_0009"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.985) with cleavage site probability 0.662 at
residue 30"
misc_feature 12124..12471
/locus_tag="Cphamn1_0009"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:245607"
gene 12507..13799
/locus_tag="Cphamn1_0010"
/db_xref="GeneID:6373652"
CDS 12507..13799
/locus_tag="Cphamn1_0010"
/note="PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; Flavocytochrome c sulphide dehydrogenase
flavin-binding;
KEGG: pvi:Cvib_0009 sulfide dehydrogenase
(flavocytochrome), flavoprotein subunit"
/codon_start=1
/transl_table=11
/product="Flavocytochrome c sulfide dehydrogenase"
/protein_id="YP_001958480.1"
/db_xref="GI:189499010"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR013027"
/db_xref="InterPro:IPR015323"
/db_xref="GeneID:6373652"
/translation="MSQKFTRRDFSKLVMAGAAGSTLSLFGGAKPLFANQKHVVVVGG
GFGGASAAKYIKKLDSSIAVTLVEPLTTYYTCPFSNWVLGGLKEMKDIAQTYDVLKNT
HGVEVIHDTATEIDAANHSVTLKGGKVLKYDRLVVSPGIDFDYDAIEGYSEEVANTVM
PHAYKAGPQTELLAKQLQEMKDGDNVIICPPGNPFRCPPGPYERASLVANYLKKNKPN
SKVIILDTKEKFSKQGLFTKGWERLYGDLIEWRAGSAGGKIVSVDPANMTVQTANGPV
KGGVINVIPPQKVGKIALDAGLTNESGWCPVNPITFESTIHPGIHVIGDASIAGAMPK
SGFAASSQGKVTAASIVRLMQGMVPAPPSLVNTCYSLVGPGYGISVAAVYKLTSDGIV
SIKGAGGLTPMDADDDQLSEEATYARGWYNNIAQDIWG"
sig_peptide 12507..12611
/locus_tag="Cphamn1_0010"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.693 at
residue 35"
misc_feature 12651..13712
/locus_tag="Cphamn1_0010"
/note="Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only]; Region: HcaD; COG0446"
/db_xref="CDD:223523"
misc_feature 13581..13796
/locus_tag="Cphamn1_0010"
/note="Flavocytochrome c sulphide dehydrogenase,
flavin-binding; Region: FCSD-flav_bind; pfam09242"
/db_xref="CDD:204176"
gene 14086..15903
/gene="secD"
/locus_tag="Cphamn1_0011"
/db_xref="GeneID:6373653"
CDS 14086..15903
/gene="secD"
/locus_tag="Cphamn1_0011"
/note="part of the preprotein secretory system; when
complexed with proteins SecF and YajC, SecDFyajC
stimulates the proton motive force-driven protein
translocation, and appears to be required for the release
of mature proteins from the extracytoplasmic side of the
membrane"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecD"
/protein_id="YP_001958481.1"
/db_xref="GI:189499011"
/db_xref="InterPro:IPR003335"
/db_xref="InterPro:IPR005791"
/db_xref="GeneID:6373653"
/translation="MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDS
LSFVRDHRESIEAAAEKSLKLGLDLRGGMYLVLEVDLIDLIEEKAWNKDDTFRRIIAD
VRSKTAGSNAQVIEVLVSEFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKE
IIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESL
LEALERINSSLAENEVSKENPDLPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPD
YSREYLTGLFQRESIQKLLPKDSEIRLSARSIEGSDGAMFYDVYLLKKTPELTGGVIT
EAKATFGASAVQPEVTMKMNSDGTAKWARITGANIGRRIAIVLDGAVYSAPVVESKIP
GGSSVINGIDGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSGLLSAAWG
LFLVAVFMVFYYRKAGFSTDIALVLNILFVLSVLAGFSAALSLPGIAGIVLTIGMAVD
ANVLIFERIREEIAQGKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYGIGPIQG
FALTLMIGIAASLFTALVVTKVIFDLLIDRNLMTAKSFG"
sig_peptide 14086..14151
/gene="secD"
/locus_tag="Cphamn1_0011"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.982) with cleavage site probability 0.796 at
residue 22"
misc_feature <15058..15873
/gene="secD"
/locus_tag="Cphamn1_0011"
/note="preprotein translocase subunit SecD; Reviewed;
Region: secD; PRK05812"
/db_xref="CDD:235615"
misc_feature 15352..15834
/gene="secD"
/locus_tag="Cphamn1_0011"
/note="protein-export membrane protein, SecD/SecF family;
Region: 2A0604s01; TIGR00916"
/db_xref="CDD:233183"
gene 15927..16853
/gene="secF"
/locus_tag="Cphamn1_0012"
/db_xref="GeneID:6373654"
CDS 15927..16853
/gene="secF"
/locus_tag="Cphamn1_0012"
/note="forms a complex with SecD and YajC; SecDFyajC
stimulates the proton motive force-driven protein
translocation; seems to modulate the cycling of SecA by
stabilizing its membrane-inserted state and appears to be
required for the release of mature proteins from the
extracytoplasmic side of the membrane; in some organisms,
such as Bacillus subtilis, SecD is fused to SecF"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_001958482.1"
/db_xref="GI:189499012"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR003335"
/db_xref="InterPro:IPR005665"
/db_xref="GeneID:6373654"
/translation="MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDF
KGGTEVVLRFEEEVTVGEVRSVLKEAGVEGAVKRYGADRSILLQTAFEGNLNDLKSLV
NNALDDRIADNPHEVLRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAV
ASVMAIFHDVFIVLGLFSIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIR
ENIRSGKSSEYTSTFNRSLNETLSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLG
IVIGTYSSLFIAAPLVLDWQKKTRRPIKLRGG"
sig_peptide 15927..16034
/gene="secF"
/locus_tag="Cphamn1_0012"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.803) with cleavage site probability 0.582 at
residue 36"
misc_feature 15942..16829
/gene="secF"
/locus_tag="Cphamn1_0012"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:237275"
misc_feature 16020..16106
/gene="secF"
/locus_tag="Cphamn1_0012"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:219463"
misc_feature 16272..16820
/gene="secF"
/locus_tag="Cphamn1_0012"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:216990"
gene 16858..17691
/locus_tag="Cphamn1_0013"
/db_xref="GeneID:6373655"
CDS 16858..17691
/locus_tag="Cphamn1_0013"
/note="KEGG: bvu:BVU_0426 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958483.1"
/db_xref="GI:189499013"
/db_xref="GeneID:6373655"
/translation="MKQLSFLVVVTLILSGCGNQHDDVVAKSGDLQLTRDELLASITY
SSQEDSLTASAIYIEDWKDLAALYQLALEKDLAGEAESQLLIEKATRQIIVQRFLDRE
MEQVEKNRGFAVDSSEVSAFYSAFPDVFVCSDTEYGVSRYYFSSAVTASRMKNALRQH
QGDEESLIKLIGSIEPRYARKNMDARGKGRRLRAHRQLHLENESVERALNSMAPGEIS
SVISLHDSLFVIMEMHDIVIKGERKSLLQAYGNIEDLLIVEKQKQYYSTVLEKARKKF
Q"
sig_peptide 16858..16920
/locus_tag="Cphamn1_0013"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.613) with cleavage site probability 0.596 at
residue 21"
gene 17725..19047
/locus_tag="Cphamn1_0014"
/db_xref="GeneID:6373656"
CDS 17725..19047
/locus_tag="Cphamn1_0014"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase; SurA domain;
KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans
isomerase"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_001958484.1"
/db_xref="GI:189499014"
/db_xref="InterPro:IPR000131"
/db_xref="InterPro:IPR000297"
/db_xref="InterPro:IPR015391"
/db_xref="GeneID:6373656"
/translation="MIMKNRFLRLVAVVFIMVAAGFQRAGAAVADRIVAVVGNEMIMQ
SQVDEQAMMARLQYTEAKNDPSLKAGILENLVTRKIVLTKARIDSIQVDESDIEKRTD
ERMRFLRSKFSSIEEMESTFSKSYAVIEKEIKDDIRDQQLINNLRRQKMMGVNVTYEE
VEDFYGANRDKLPVVPEAVEVSQVVMYPKVTAEAKAKARAAIEAMQQRLRSGENFAAL
AREYSQDPGSARLGGDLGYSRRGEFVKNYEKVAFGLEEGEISGIVETRFGYHIIQLLD
KEQDAVHTRHILIVFDRSTLDAPAAKAALEMIRSDIISGKSDFAEMAREYSDDPVSSK
YGGVIRNTETGETRFAVSSLRDQLKTVVRSFKKVGDISSVVRVAPESGAPFYAIFKLN
SREPAHKLDLSSDYARLEKLAIDEKQNRLFQEWINELQKEVYVRISDI"
sig_peptide 17725..17808
/locus_tag="Cphamn1_0014"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.865 at
residue 28"
misc_feature 17815..18165
/locus_tag="Cphamn1_0014"
/note="SurA N-terminal domain; Region: SurA_N; pfam09312"
/db_xref="CDD:150092"
misc_feature <18343..18552
/locus_tag="Cphamn1_0014"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
misc_feature 18580..18897
/locus_tag="Cphamn1_0014"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene complement(19036..20970)
/locus_tag="Cphamn1_0015"
/db_xref="GeneID:6373657"
CDS complement(19036..20970)
/locus_tag="Cphamn1_0015"
/EC_number="5.99.1.3"
/note="KEGG: plt:Plut_0010 DNA gyrase, B subunit;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase subunit B domain protein; ATP-binding
region ATPase domain protein; TOPRIM domain protein; DNA
topoisomerase type IIA subunit B region 2 domain protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_001958485.1"
/db_xref="GI:189499015"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:6373657"
/translation="MSEIQKNTSPQAYEATNIQILDGIEHVRKRPAMYIGDLHSRGLH
HLIYEIVDNSIDETLAGYNESIELSLNPDGSVTVTDNGRGIPVDIHPQKKKSALELVM
TLIGAGGKFDKGAYKVSGGLHGVGASVVNALSEWCEVEVYREGNIWFQRYHKGIPQRD
VEVIGESTKTGTKTTFMPDPDIFKITEFRKDIVVDRMRELAFLNNILKIVVKDIDGSE
ETFHYEGGIKEFVTFTDHNRISLLKEPVYISGERDSTVVEIALQYNDSYQENVFSYVN
NINTHEGGTHVTGFRKALTRTLNSYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAE
PQFEGQTKTKLGNSETQSIVESIVNEQLSDFAESNPGVLKTIIEKVKSAALSRDAARK
AKDLTRRKSALESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILP
LKGKILNVEKARLHKMLENEEIKTIILALGTSFGEEEFSVEKLRYGKIIIMTDADVDG
AHIRTLLLTFFFRYMRSLIEAGKVFIAQPPLYLIKSGKEQKYAWDDDERNGIVESIRK
KQKGRGNINIQRYKGLGEMNPEQLWSTTMDPEHRSLLQVSVENAMEADQVFSTLMGDK
VEPRRNFIEKNARYVRRLDV"
misc_feature complement(19039..20955)
/locus_tag="Cphamn1_0015"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:235542"
misc_feature complement(<20566..20844)
/locus_tag="Cphamn1_0015"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(order(20590..20601,20716..20721,20725..20727,
20731..20733,20737..20739,20803..20805,20812..20814,
20824..20826))
/locus_tag="Cphamn1_0015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(20812..20814)
/locus_tag="Cphamn1_0015"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(20593..20595,20599..20601,20719..20721,
20725..20727))
/locus_tag="Cphamn1_0015"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature complement(19783..20298)
/locus_tag="Cphamn1_0015"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature complement(20143..20145)
/locus_tag="Cphamn1_0015"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature complement(order(19789..19791,19801..19803,19813..19818,
19951..19953,19957..19962,19969..19971))
/locus_tag="Cphamn1_0015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(order(19945..19947,19951..19953))
/locus_tag="Cphamn1_0015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(19360..19704)
/locus_tag="Cphamn1_0015"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature complement(order(19450..19452,19456..19458,19462..19464,
19672..19674,19681..19686))
/locus_tag="Cphamn1_0015"
/note="active site"
/db_xref="CDD:173786"
misc_feature complement(order(19462..19464,19684..19686))
/locus_tag="Cphamn1_0015"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature complement(19072..19266)
/locus_tag="Cphamn1_0015"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(20997..21137)
/locus_tag="Cphamn1_0016"
/db_xref="GeneID:6373658"
CDS complement(20997..21137)
/locus_tag="Cphamn1_0016"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958486.1"
/db_xref="GI:189499016"
/db_xref="GeneID:6373658"
/translation="MHEVYSSSILFFFLPPVLDALLPGLPVSVGYEAIFCYLGKQNIY
TI"
gene complement(21181..21561)
/locus_tag="Cphamn1_0017"
/db_xref="GeneID:6373659"
CDS complement(21181..21561)
/locus_tag="Cphamn1_0017"
/note="PFAM: protein of unknown function UPF0102;
KEGG: pvi:Cvib_0014 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958487.1"
/db_xref="GI:189499017"
/db_xref="InterPro:IPR003509"
/db_xref="GeneID:6373659"
/translation="MSFIPHDLGRQGEHTAVTFLIEKGYRILQRNYRHRRNEIDIIAL
DRRTLCFIEVKTRSSASKGHPLEAVTPEKQKEIIRAATAYLSAYPSPEPDCRFDVIAI
IAHDFTNGRIREFKLEHITNAFMT"
misc_feature complement(21190..21561)
/locus_tag="Cphamn1_0017"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:237119"
gene complement(21575..22198)
/gene="rnhB"
/locus_tag="Cphamn1_0018"
/db_xref="GeneID:6373660"
CDS complement(21575..22198)
/gene="rnhB"
/locus_tag="Cphamn1_0018"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_001958488.1"
/db_xref="GI:189499018"
/db_xref="InterPro:IPR001352"
/db_xref="GeneID:6373660"
/translation="MLLSTEDYEEKFWHEHTCVCGIDEAGRGPLAGPVVAAAVMFPRY
FKPEGVLTGLNDSKTLRPKQRSALAEAIQSAAECFSISIIDHTTIDSVNIFNATMLAM
NAAAEKLEQLPGLLLIDGNRFVPSLPIPYLTIVKGDTKVVSIAAASILAKTCRDRIMN
EYHREYPEYGFAQHFGYPTQAHIAAIARYGRCPIHRTSFRVKQLGEK"
misc_feature complement(21590..22141)
/gene="rnhB"
/locus_tag="Cphamn1_0018"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature complement(order(21743..21745,21800..21802,21842..21844,
21902..21904,21911..21919,22121..22132))
/gene="rnhB"
/locus_tag="Cphamn1_0018"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature complement(order(21785..21787,21842..21844,22127..22132))
/gene="rnhB"
/locus_tag="Cphamn1_0018"
/note="active site"
/db_xref="CDD:187695"
gene 22353..24065
/locus_tag="Cphamn1_0019"
/db_xref="GeneID:6373661"
CDS 22353..24065
/locus_tag="Cphamn1_0019"
/note="TIGRFAM: ribonuclease, Rne/Rng family;
PFAM: RNA binding S1 domain protein;
KEGG: plt:Plut_0012 ribonuclease E and G"
/codon_start=1
/transl_table=11
/product="ribonuclease, Rne/Rng family"
/protein_id="YP_001958489.1"
/db_xref="GI:189499019"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004659"
/db_xref="GeneID:6373661"
/translation="MKKTVKKQLLMNKSGDEIQVALVEEGRLAELVIERPDSLRSIGD
IYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTTTEDYRALIEDDDDDDENGNGDT
DEEGKAGMKTQQEQKEDTRRPSPAGNGQKNGGSRSKGNGASAGKDGDGRQSYTQMIAG
KLKTNDSILVQVIKEPISNKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERA
RLKKLVRSMLPDGFGAIIRTVAELQEEELLKKDLEKLLVKWEQIEEKLKDAKPPQLIF
KEDTIISSVLRDSLTTDVTELVANSQSIHKETLNYIQWAAPEMEKNVFFYQGKLPLFE
GYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKKEQEENSLKTNLE
ASREVVRQLRLRDIGGIIVVDFIDMLDPKNSKKVYDSMKNELRQDRAKSNILPMSDFG
LMQITRERIRPSLMQRMGDQCPACGGSGIVQARCTTINQIERWLRKYALQKKMVFQQL
DLYVSPTVAEPLRDTDRNIEMKWFLQHLLFVRVKQDESLRSDDFRFYARKNSADLTAE
YGDL"
misc_feature 22458..>22616
/locus_tag="Cphamn1_0019"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:239900"
misc_feature <22812..22931
/locus_tag="Cphamn1_0019"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature 22917..23732
/locus_tag="Cphamn1_0019"
/note="Ribonuclease E/G family; Region: RNase_E_G;
pfam10150"
/db_xref="CDD:220602"
gene 24316..25173
/gene="dapD"
/locus_tag="Cphamn1_0020"
/db_xref="GeneID:6373662"
CDS 24316..25173
/gene="dapD"
/locus_tag="Cphamn1_0020"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_001958490.1"
/db_xref="GI:189499020"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:6373662"
/translation="MQLEEVRTRIEELAALSAPELQKHDDAREVFSAFKVLLNSGQAR
AAEKKDSSWQVNAWVKQGILLGMKLGILCESSIAFPEGNDWTFVDKDTYPVRRFVKED
GIRIVPGGSSVRDGAYLASSVVMMPPAYVNVGAYVDAGSMIDSHALVGSCAQVGRNVH
LSAAVQVGGVLEPIGAVPVIIEDDVMVGGNCGIYEGTIVRSRSVIGTGVILNGSTPVY
DLVNKSIIRKTPETPLTIPEGAVVVAGSRKIQGEFAAEHGLSIYTPLIVKYRDEKTDS
VTALESALR"
misc_feature 24322..25170
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:236996"
misc_feature 24628..25056
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(24631..24636,24643..24648,24697..24699,24703..24705,
24751..24759,24805..24807,24883..24885,24889..24891,
24943..24945,25042..25053)
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(24631..24633,24655..24657,24691..24693,24709..24711,
24745..24747,24766..24768,24793..24795,24799..24801,
24820..24822,24826..24831,24838..24840,24877..24885,
24898..24900,24931..24936)
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(24631..24633,24655..24657,24691..24693,24709..24711,
24745..24747,24766..24768,24826..24828)
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(24799..24804,24820..24822,24838..24840,24877..24885,
24898..24900,24931..24936)
/gene="dapD"
/locus_tag="Cphamn1_0020"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 25214..26905
/locus_tag="Cphamn1_0021"
/db_xref="GeneID:6373663"
CDS 25214..26905
/locus_tag="Cphamn1_0021"
/EC_number="3.4.21.102"
/note="KEGG: cte:CT2258 carboxyl-terminal protease;
TIGRFAM: carboxyl-terminal protease;
PFAM: PDZ/DHR/GLGF domain protein; peptidase S41"
/codon_start=1
/transl_table=11
/product="carboxyl-terminal protease"
/protein_id="YP_001958491.1"
/db_xref="GI:189499021"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR004447"
/db_xref="InterPro:IPR005151"
/db_xref="GeneID:6373663"
/translation="MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKN
IELLGEVYRNVSENYVDSIDTAEFMYAGIDGMLETLDPYTVFLDEKESDELGELTSGH
YAGIGVRISEIAGEVYVLSVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIK
GPAGSEVVLTVERYGKKSRVRARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDE
LKRAINELDAASRIRKRPMAGVILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRD
PESRISYETKRAPVVEKRPLAILINKNSASAAEIVAGAIQELDRGVIVGNRSFGKGLV
QSVITLPYDSKLKMTTSKYYTPSGRLIQQEHDWTGGPRKVLEREEKPADGMVFYTRNK
RKVYGGGGILPDIRLDGYIPGSYEAALRKDGMLFRFASTYRASHDRIPQAGIDRKSLM
RDFAGFLERESFIYKSKPEELLEEVRKSLAGNHKEAHPGIDSLVASLEKEMKLLAGKQ
KSSESKQVALALEQEILRHYDEEAALRSRIEDDPVVKKALEVLQDPGRYSTLLSP"
misc_feature 25340..>25480
/locus_tag="Cphamn1_0021"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:243070"
misc_feature 25379..26299
/locus_tag="Cphamn1_0021"
/note="C-terminal peptidase (prc); Region: prc; TIGR00225"
/db_xref="CDD:232883"
misc_feature 25520..25744
/locus_tag="Cphamn1_0021"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:238488"
misc_feature order(25526..25537,25541..25543,25676..25681,25688..25693)
/locus_tag="Cphamn1_0021"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:238488"
misc_feature 25799..26302
/locus_tag="Cphamn1_0021"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(26129..26131,26204..26206)
/locus_tag="Cphamn1_0021"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene complement(26895..27584)
/locus_tag="Cphamn1_0022"
/db_xref="GeneID:6373664"
CDS complement(26895..27584)
/locus_tag="Cphamn1_0022"
/note="KEGG: cte:CT2257 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958492.1"
/db_xref="GI:189499022"
/db_xref="GeneID:6373664"
/translation="MLLSLPNWLIHISSSLEWGIASLMMYRYGTMIGRQDVQRFGLFM
IPHWIGSWFVLAYHVSGDQVPVLLDLSETVNLFGSMALLYASLNILKTTRRKGSAKIL
AAAGIFLISGRPQSYMGEDIFDLILQISSLVYLSFLVSLAFIRKRDPEVFSRMTIAGF
WFVVVFISVTVSLMYVSSEIRGFPTLSHDDLLHGGAESLLTISNMMIIIGIHRQIKRF
EKGQIASSPMG"
misc_feature complement(27318..27581)
/locus_tag="Cphamn1_0022"
/note="Protein of unknown function (DUF2499); Region:
DUF2499; pfam10693"
/db_xref="CDD:220850"
misc_feature complement(26928..>27149)
/locus_tag="Cphamn1_0022"
/note="Protein of unknown function (DUF3593); Region:
DUF3593; pfam12159"
/db_xref="CDD:192948"
gene complement(27585..28724)
/locus_tag="Cphamn1_0023"
/db_xref="GeneID:6373665"
CDS complement(27585..28724)
/locus_tag="Cphamn1_0023"
/note="TIGRFAM: geranylgeranyl reductase;
PFAM: monooxygenase FAD-binding; FAD dependent
oxidoreductase;
KEGG: cte:CT2256 geranylgeranyl hydrogenase"
/codon_start=1
/transl_table=11
/product="geranylgeranyl reductase"
/protein_id="YP_001958493.1"
/db_xref="GI:189499023"
/db_xref="InterPro:IPR002938"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR010253"
/db_xref="InterPro:IPR011777"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:6373665"
/translation="MRFDVAVVGGGPSGAVAAAELAKAGISTALIERNLENVKPCGGA
IPLGLIEEFGIPEALVEKKLSRMSVRSPAGRMIFMEMPNGYVGMVRRERFDSYLRDRA
KRHGSEVIEARMKEISRSGDTYTITLSKEHPPVEASYIIGADGANSRTAEVLGFPQNE
LQVIAMQQRFHYSDTLKPYEDLVEIWFDGDVSPDFYGWIFPKTDHIAIGTGTEFRKHN
LRELQDRFVQKIGISEKPYLDEAAKIPMKPRKSFTQDNAILVGDAAGLVTPANGEGIF
FAMRSGKLGAEAMIDRIRNNKPLKIYEKTFRKLYAPIFFGLQTLQSVYYKNDRLRESF
VAICEDRDVQRITFDSYLYKKMVPAPWSVQMKIFMKNIYHLAKGS"
sig_peptide complement(28668..28724)
/locus_tag="Cphamn1_0023"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.935) with cleavage site probability 0.761 at
residue 19"
misc_feature complement(27594..28652)
/locus_tag="Cphamn1_0023"
/note="geranylgeranyl reductase; Region: BchP-ChlP;
TIGR02023"
/db_xref="CDD:233689"
gene complement(28826..30292)
/locus_tag="Cphamn1_0024"
/db_xref="GeneID:6373666"
CDS complement(28826..30292)
/locus_tag="Cphamn1_0024"
/note="Catalyzes a two-step reaction, first charging a
glycine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glycyl-tRNA synthetase"
/protein_id="YP_001958494.1"
/db_xref="GI:189499024"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR002315"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:6373666"
/translation="MGNADKRVQSVAQSPEKVMNKLVSLAKRRGFIYPSSEIYGGLSS
CFDYGPLGSEMKKNIKDLWWISMTRKHRNIVGIDASIMMNPTVWEASGHVSSFNDPMI
DDKTTKRRYRADHLIENHIEKLRRDAKEEDAHRVSSYYESASEAEDQNRAFYDIIIAE
EIKAPDTGSADWTEVRQFNLMFQCNMGALAESSGKVYLRPETAQGIFVNFHNVRESSR
MKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQVESFESWREERFNW
YIERLGITPEKLHWYKHDKLAHYADLAYDIKFEYPFGIEEIEGIHSRTDFDLKQHQEF
SGKNMEYIDQTTNERYIPYVVETSAGSDRLFLALLCDSYTEDVIDGEQRVMMRFAPKI
APVKAAILPLMKKGEMGEKAAKLRDELATDFMVQYDDAGSIGKRYRRQDEIGTPFCFT
VDHDSMEDHSVTVRYRDTAKQERIEISKVKEFLGAKLV"
misc_feature complement(28832..30247)
/locus_tag="Cphamn1_0024"
/note="glycyl-tRNA synthetase; Provisional; Region:
PRK04173"
/db_xref="CDD:235240"
misc_feature complement(<30038..30229)
/locus_tag="Cphamn1_0024"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it...; Region: class_II_aaRS-like_core;
cl00268"
/db_xref="CDD:241739"
misc_feature complement(30059..30073)
/locus_tag="Cphamn1_0024"
/note="motif 1; other site"
/db_xref="CDD:238391"
misc_feature complement(29186..>29755)
/locus_tag="Cphamn1_0024"
/note="Glycyl-tRNA synthetase (GlyRS)-like class II core
catalytic domain. GlyRS functions as a homodimer in
eukaryotes, archaea and some bacteria and as a
heterotetramer in the remainder of prokaryotes. It is
responsible for the attachment of glycine to the 3...;
Region: GlyRS-like_core; cd00774"
/db_xref="CDD:238397"
misc_feature complement(order(29204..29206,29213..29215,29219..29221,
29225..29227,29324..29326,29342..29347,29537..29539,
29543..29545,29549..29551,29558..29566,29588..29590,
29594..29596,29684..29686,29690..29692))
/locus_tag="Cphamn1_0024"
/note="active site"
/db_xref="CDD:238397"
misc_feature complement(29588..29599)
/locus_tag="Cphamn1_0024"
/note="motif 2; other site"
/db_xref="CDD:238397"
misc_feature complement(29204..29215)
/locus_tag="Cphamn1_0024"
/note="motif 3; other site"
/db_xref="CDD:238397"
misc_feature complement(28844..29191)
/locus_tag="Cphamn1_0024"
/note="GlyRS Glycyl-anticodon binding domain. GlyRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
GlyRS_anticodon; cd00858"
/db_xref="CDD:238435"
misc_feature complement(order(28901..28903,28907..28909,28937..28939,
28961..28963,28979..28981,29084..29089))
/locus_tag="Cphamn1_0024"
/note="anticodon binding site; other site"
/db_xref="CDD:238435"
gene complement(30477..30608)
/locus_tag="Cphamn1_0025"
/db_xref="GeneID:6373667"
CDS complement(30477..30608)
/locus_tag="Cphamn1_0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958495.1"
/db_xref="GI:189499025"
/db_xref="GeneID:6373667"
/translation="MDLYSNKYCDFEHLERQGSGSAPERRALAEPGLPDSGDHRDPA"
gene 30773..31360
/locus_tag="Cphamn1_0026"
/db_xref="GeneID:6373668"
CDS 30773..31360
/locus_tag="Cphamn1_0026"
/note="KEGG: pvi:Cvib_0850 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958496.1"
/db_xref="GI:189499026"
/db_xref="GeneID:6373668"
/translation="MTQIRNIIIAVALLTGLSSQAMAASTSGTTNVSVRVPEFIALHF
YSNITLNFVAPTAEVIDEGRNDVDAGFNGNTTGNGLDANSLMNASLELDGTKTSVKLN
NVWAVRGFSKSGNARVEVTVPSAKLQNGTSEITMSNVKVSDDAQSGSTITTKLNGISK
GRATTGNIDMDLDFSNTTRSGSHTGAQYTITATTI"
sig_peptide 30773..30844
/locus_tag="Cphamn1_0026"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.999 at
residue 24"
gene 31718..33085
/locus_tag="Cphamn1_0027"
/db_xref="GeneID:6373669"
CDS 31718..33085
/locus_tag="Cphamn1_0027"
/note="PFAM: aminotransferase class V;
KEGG: saq:Sare_2039 aminotransferase class V"
/codon_start=1
/transl_table=11
/product="class V aminotransferase"
/protein_id="YP_001958497.1"
/db_xref="GI:189499027"
/db_xref="InterPro:IPR000192"
/db_xref="GeneID:6373669"
/translation="MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKG
SMPIPVLKNYKKGLDRIAKDPRRVFLEKTEVTREKIAKGYGARADEIAISRNTTDAIS
QVLYGIDWRRDEEILCSTLEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVES
ARRGIVPGKTKVMFFSAPAQPNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLD
DTGIDFWGISGYKWQCGPGGTGILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRP
LDFDIGAALSHYGFPESADLRALGEACEIWDRAGRARIERYILWLADYAREKLVAVFG
EHALLQACKDEELKSGLVAFNPFPEKEQRRDLQLAHRFNARLSRKYGYRLGYGGIGLN
GFTRDPEPDAGRFYEGCVPNRNALTNEPEPEDIPFRFGTPVWINRKDIDRFIKACRKT
LDSVA"
misc_feature 31928..32782
/locus_tag="Cphamn1_0027"
/note="Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones]; Region: csdA; COG0520"
/db_xref="CDD:223594"
misc_feature 31937..32782
/locus_tag="Cphamn1_0027"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:241782"
misc_feature order(32006..32011,32018..32020,32246..32248,32330..32332,
32339..32341,32399..32401,32408..32410)
/locus_tag="Cphamn1_0027"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 32408..32410
/locus_tag="Cphamn1_0027"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(33469..33774)
/locus_tag="Cphamn1_0028"
/db_xref="GeneID:6373670"
CDS complement(33469..33774)
/locus_tag="Cphamn1_0028"
/note="PFAM: ATP-dependent Clp protease adaptor protein
ClpS;
KEGG: cte:CT2237 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease adaptor protein ClpS"
/protein_id="YP_001958498.1"
/db_xref="GI:189499028"
/db_xref="InterPro:IPR003769"
/db_xref="GeneID:6373670"
/translation="MLSFWQASHGGEESETSTQDTLSDTLDAYRVVLFNDEEHTFDEV
ILQIIKAIQCSRSKAEKHTWEVHTKGRSIVFAGPLPACLKVSAILEEINLKTEIQTG"
misc_feature complement(33481..33690)
/locus_tag="Cphamn1_0028"
/note="ATP-dependent Clp protease adaptor protein ClpS;
Region: ClpS; pfam02617"
/db_xref="CDD:217146"
gene complement(34128..35078)
/locus_tag="Cphamn1_0029"
/db_xref="GeneID:6373671"
CDS complement(34128..35078)
/locus_tag="Cphamn1_0029"
/EC_number="3.4.17.13"
/note="PFAM: peptidase U61 LD-carboxypeptidase A;
KEGG: cte:CT2236 muramoyltetrapeptide carboxypeptidase"
/codon_start=1
/transl_table=11
/product="Muramoyltetrapeptide carboxypeptidase"
/protein_id="YP_001958499.1"
/db_xref="GI:189499029"
/db_xref="InterPro:IPR003507"
/db_xref="GeneID:6373671"
/translation="MRTLIPKALRHGDTIGLISPSSPSPDHEKVGHAVSYLEKLGYRV
KPAEHFNSRTENRLELDRRKLSDLHEMFADTSVKAIFCLRGGSGATRLLQDLDYELVS
RNPKILAGYSDITALSIGLFAKTGLLTFSGPMLATELHNPSGYTEENFWKILESTSSV
HQIINHPDHPINVYREGSATGTLLAGNLTVLSCLVGTPYLPPLDGTLPIFEDINEEPY
RIDRLLSHFHNAGLLSSCSGILFGQFSKEIITFDTQHPLLDILRYYTEKTSPNVPVVA
GLSYGHIDDLLTLPVGATCTLNASHERISLTTSPAVCSDQ"
misc_feature complement(34191..35036)
/locus_tag="Cphamn1_0029"
/note="LD-Carboxypeptidase, a serine protease, includes
microcin C7 self immunity protein; Region: Peptidase_S66;
cd07025"
/db_xref="CDD:132882"
misc_feature complement(order(34287..34292,34401..34406,34413..34418,
34422..34427,34491..34496,34500..34505,34806..34811))
/locus_tag="Cphamn1_0029"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132882"
misc_feature complement(order(34233..34235,34446..34448,34743..34745))
/locus_tag="Cphamn1_0029"
/note="catalytic triad [active]"
/db_xref="CDD:132882"
gene complement(35162..35428)
/locus_tag="Cphamn1_0030"
/db_xref="GeneID:6373672"
CDS complement(35162..35428)
/locus_tag="Cphamn1_0030"
/note="PFAM: H+transporting two-sector ATPase
delta/epsilon subunit;
KEGG: plt:Plut_0020 ATP synthase F1, epsilon subunit"
/codon_start=1
/transl_table=11
/product="H+transporting two-sector ATPase delta/subunit
epsilon"
/protein_id="YP_001958500.1"
/db_xref="GI:189499030"
/db_xref="InterPro:IPR001469"
/db_xref="GeneID:6373672"
/translation="MAGADKTFDIEIVTPQAQFFAGEVTSILAPGRDGLFQVLKNHAP
LVSALKGGKVTLGLPDNSEKTFMIADGFFEMSDNKAILLAEDIS"
misc_feature complement(<35168..35407)
/locus_tag="Cphamn1_0030"
/note="mitochondrial ATP synthase delta subunit; Region:
F1-ATPase_delta; cd12152"
/db_xref="CDD:213395"
misc_feature complement(order(35174..35182,35186..35188,35204..35221,
35288..35302,35366..35368,35375..35377,35381..35389,
35396..35398))
/locus_tag="Cphamn1_0030"
/note="gamma subunit interface [polypeptide binding];
other site"
/db_xref="CDD:213395"
misc_feature complement(order(35171..35176,35216..35224,35228..35230,
35276..35278,35282..35287,35333..35335,35381..35383))
/locus_tag="Cphamn1_0030"
/note="epsilon subunit interface [polypeptide binding];
other site"
/db_xref="CDD:213395"
misc_feature complement(order(35258..35260,35300..35308,35312..35314,
35318..35320,35324..35329,35345..35347,35351..35353))
/locus_tag="Cphamn1_0030"
/note="LBP interface [polypeptide binding]; other site"
/db_xref="CDD:213395"
gene complement(35443..36831)
/locus_tag="Cphamn1_0031"
/db_xref="GeneID:6373673"
CDS complement(35443..36831)
/locus_tag="Cphamn1_0031"
/note="Produces ATP from ADP in the presence of a proton
gradient across the membrane. The beta chain is a
regulatory subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit beta"
/protein_id="YP_001958501.1"
/db_xref="GI:189499031"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR000793"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005722"
/db_xref="GeneID:6373673"
/translation="MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLET
QQHLGEERVRTISMDATDGLVRGMPVINTGKPIQVPVGPNVLGRMLNVVGDPIDGKGP
VKSEKSYSIHRPTPKFDVLSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGFSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGAR
ARVALTGLSIAEYFRDEENRDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGT
EMGELQDRIVSTNKGSVTSVQAIYVPADDLTDPAPATAFTHLDATTVLSRSIAELGIY
PAVDPLDSTSRILDPNIVGDEHYNTAQAVKSLLQRYKDLQDIIAILGMDELSDEDKLT
VSRARKIQRFLSQPFFVAEAFTGLEGKYVKLEDTIKGFNEIIDGKHDDLPESAFYLVG
TIEEAVEKAKTL"
misc_feature complement(35446..36831)
/locus_tag="Cphamn1_0031"
/note="F0F1 ATP synthase subunit beta; Validated; Region:
PRK09280"
/db_xref="CDD:236447"
misc_feature complement(36610..36816)
/locus_tag="Cphamn1_0031"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:217261"
misc_feature complement(35785..36606)
/locus_tag="Cphamn1_0031"
/note="F1 ATP synthase beta subunit, nucleotide-binding
domain. The F-ATPase is found in bacterial plasma
membranes, mitochondrial inner membranes and in
chloroplast thylakoid membranes. It has also been found in
the archaea Methanosarcina barkeri. It uses a...; Region:
F1-ATPase_beta; cd01133"
/db_xref="CDD:238553"
misc_feature complement(order(35797..35799,35803..35805,35809..35814,
35839..35844,35875..35883,35887..35889,35908..35910,
35920..35925,35932..35934,35983..35985,36004..36006,
36016..36018,36031..36036,36040..36048,36064..36066,
36076..36078,36085..36087,36178..36180,36193..36201,
36265..36267,36274..36282,36463..36465,36469..36471,
36475..36480,36484..36486,36535..36537))
/locus_tag="Cphamn1_0031"
/note="alpha subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:238553"
misc_feature complement(36358..36378)
/locus_tag="Cphamn1_0031"
/note="Walker A motif; other site"
/db_xref="CDD:238553"
misc_feature complement(order(35830..35835,36085..36087,36097..36099,
36271..36273,36280..36285,36355..36363,36370..36372))
/locus_tag="Cphamn1_0031"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238553"
misc_feature complement(36097..36111)
/locus_tag="Cphamn1_0031"
/note="Walker B motif; other site"
/db_xref="CDD:238553"
misc_feature complement(order(35812..35817,35833..35835,35839..35841))
/locus_tag="Cphamn1_0031"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:238553"
misc_feature complement(35446..35763)
/locus_tag="Cphamn1_0031"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:215848"
gene complement(36926..37001)
/locus_tag="Cphamn1_R0001"
/note="tRNA-Thr3"
/db_xref="GeneID:6373674"
tRNA complement(36926..37001)
/locus_tag="Cphamn1_R0001"
/product="tRNA-Thr"
/db_xref="GeneID:6373674"
gene 37167..37715
/locus_tag="Cphamn1_0032"
/db_xref="GeneID:6373675"
CDS 37167..37715
/locus_tag="Cphamn1_0032"
/note="PFAM: alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen; Redoxin domain protein;
KEGG: plt:Plut_0022 thiol:disulfide interchange protein,
thioredoxin family protein"
/codon_start=1
/transl_table=11
/product="redoxin domain-containing protein"
/protein_id="YP_001958502.1"
/db_xref="GI:189499032"
/db_xref="InterPro:IPR000866"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR011594"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:6373675"
/translation="MRFFKLCTVLSISLVIIACKTEPAETAKPQAATVEETQVVMAPE
FAGKTLEGADFSSQELSGKVYILNFFASWCPPCRAEVPDMIELQNEYEQKGFTFIGVT
VDEDLTKARQFVDDFGINFPVLVADQQMIDAYSDHVQGGLRSIPTSFVISADGSISSV
LVGAQSKMAFDGLIREVIGAGK"
sig_peptide 37167..37229
/locus_tag="Cphamn1_0032"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.677) with cleavage site probability 0.301 at
residue 21"
misc_feature 37296..37655
/locus_tag="Cphamn1_0032"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:239264"
misc_feature 37350..37637
/locus_tag="Cphamn1_0032"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature order(37386..37388,37395..37397)
/locus_tag="Cphamn1_0032"
/note="catalytic residues [active]"
/db_xref="CDD:239264"
gene 37806..39665
/locus_tag="Cphamn1_0033"
/db_xref="GeneID:6373676"
CDS 37806..39665
/locus_tag="Cphamn1_0033"
/EC_number="4.1.1.32"
/note="catalyzes the phosphorylation and decarboxylation
of oxaloacetate to form phosphoenolpyruvate using GTP"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxykinase"
/protein_id="YP_001958503.1"
/db_xref="GI:189499033"
/db_xref="InterPro:IPR008209"
/db_xref="InterPro:IPR008210"
/db_xref="GeneID:6373676"
/translation="MRIDPPDYVKNTKLIEWVRETAELCQPDSIIWCDGTQEEYDTLC
QEMVDSGTFTRLSDEKRPNSFLCRSDPSDVARVEDRTYICSLRRQDAGPTNNWVPPKE
MKATLKELYSGCMKGRTMYVIPFSMGPLGSHIAHIGVEITDSPYVVVNMRIMTRMGRK
VMDILADGRDFVHCLHSVGAPLEKGAQDVPWPCNDQKYIVHFPEERSIMSFGSGYGGN
ALLGKKCFALRIASSMARDEGWLAEHMLILCVESPDGEKTYVAAAFPSACGKTNFAML
IPPDSFEGWKVTTIGDDIAWIKPAEDGRLHAINPEYGFFGVAPGTSVKTNPNAMATLS
ANCIYTNVALTPEGDVWWEGMTDTPPESLIDWQGNAWTPDAGRPAAHPNARFTSPASQ
CPSIDPEWENPAGVPIDAFIFGGRRSNLVPLVYQSPNWYFGVYLAATMGSEKTAAAAG
KIGEVRRDPFAMLPFCGYHMGDYFTHWLHVGRLLQEPPRIFGVNWFRKDENGKFLWPG
FGENMRVLKWIVDRVHGRSSAVESPLGWMPKYESMEWDGLDEFTLDDFSKLMAVDRED
WKKELLSHEALFEKIYDKLPKEFSHIRELLLSTFWLSPEHWGLAQERYTGEHH"
misc_feature 37845..39593
/locus_tag="Cphamn1_0033"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_GTP;
cd00819"
/db_xref="CDD:238417"
misc_feature order(38031..38033,38448..38450,38454..38456,38472..38477,
38535..38537,38601..38621,38679..38684,38748..38750,
38754..38756,38781..38783,38958..38960,39321..39323,
39330..39332,39339..39341)
/locus_tag="Cphamn1_0033"
/note="active site"
/db_xref="CDD:238417"
misc_feature order(38031..38033,38448..38450,38454..38456,38472..38477,
38748..38750,38958..38960)
/locus_tag="Cphamn1_0033"
/note="substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:238417"
misc_feature order(38475..38477,38535..38537,38616..38618,38679..38684,
38748..38750)
/locus_tag="Cphamn1_0033"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238417"
misc_feature order(38604..38606,38610..38612,39051..39053,39288..39293,
39321..39323,39330..39332,39339..39341)
/locus_tag="Cphamn1_0033"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:238417"
gene 40080..40280
/locus_tag="Cphamn1_0034"
/db_xref="GeneID:6373677"
CDS 40080..40280
/locus_tag="Cphamn1_0034"
/note="KEGG: dau:Daud_0760 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958504.1"
/db_xref="GI:189499034"
/db_xref="GeneID:6373677"
/translation="MECKKEENLTRCNCTYEPCPRKGICCECIAYHKAKGQLPACLFP
DDAEKSWDRSIARFIEVNRKDR"
gene complement(40349..40564)
/locus_tag="Cphamn1_0035"
/db_xref="GeneID:6373678"
CDS complement(40349..40564)
/locus_tag="Cphamn1_0035"
/note="PFAM: protein of unknown function DUF1458;
KEGG: cte:CT2229 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958505.1"
/db_xref="GI:189499035"
/db_xref="InterPro:IPR009923"
/db_xref="GeneID:6373678"
/translation="MSTQHVYKKIELVGSSSKSIEDAVNNAVERAAETIRNIRWVEVV
ETRCHVEENRIAYWQVTVRIGFTLDAA"
misc_feature complement(40358..40552)
/locus_tag="Cphamn1_0035"
/note="Dodecin; Region: Dodecin; pfam07311"
/db_xref="CDD:203610"
gene complement(40588..40725)
/locus_tag="Cphamn1_0036"
/db_xref="GeneID:6373679"
CDS complement(40588..40725)
/locus_tag="Cphamn1_0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958506.1"
/db_xref="GI:189499036"
/db_xref="GeneID:6373679"
/translation="MQRPEVFPIDRPHIIMRFIPVPVVSMLSIYLLMIYDRICYRHVD
I"
gene 40839..41351
/locus_tag="Cphamn1_0037"
/db_xref="GeneID:6373680"
CDS 40839..41351
/locus_tag="Cphamn1_0037"
/note="KEGG: plt:Plut_0031 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958507.1"
/db_xref="GI:189499037"
/db_xref="GeneID:6373680"
/translation="MSEPQKKVALIASQGTLDWAYPPFILGSAAAAMDMEVVIFFTFY
GLPLLNKKIDAKVSPHGNPAMPMKMPFGSKDFQGINWPVPNFLSGNIPGFDSLATGLM
KETFKNKGVATIEELRELCIDCGVKFIACQMTMDVFGFTRDDFIDGVDFGGAAMFLEY
AADADIQLFI"
misc_feature 40848..41345
/locus_tag="Cphamn1_0037"
/note="DsrE/DsrF/DrsH-like family; Region: DrsE_2;
pfam13686"
/db_xref="CDD:205862"
gene 41434..42216
/locus_tag="Cphamn1_0038"
/db_xref="GeneID:6373681"
CDS 41434..42216
/locus_tag="Cphamn1_0038"
/note="PFAM: Cobyrinic acid ac-diamide synthase;
KEGG: chy:CHY_1834 CO dehydrogenase/acetyl-CoA synthase
complex, accessory protein CooC"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_001958508.1"
/db_xref="GI:189499038"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:6373681"
/translation="MKIAISGKGGVGKTTLSALMARELSEQGKRVLAIDADPNGNLAE
AVGYDAGRLGRIEPLIEKKALVEERTGAKPGSMGGYFVLNPRVDDLIERFSVEINGMR
LMVTGELKEALGGCYCPENALLRSFLRHLMVESEDWVVLDMEAGFEHLTRGTAESVSI
LLVVVEPGLRAMKTAEKITSLAKQLHIQQVGFIVNKVHSEGQIRRISERLGTESIWAV
IPFDFLAVEADLSGSSPFEACPAMLETVRELIEKLDKAQVSG"
misc_feature 41434..42198
/locus_tag="Cphamn1_0038"
/note="CO dehydrogenase maturation factor [Cell division
and chromosome partitioning]; Region: CooC; COG3640"
/db_xref="CDD:226166"
misc_feature 41437..41928
/locus_tag="Cphamn1_0038"
/note="The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible...; Region:
CooC; cd02034"
/db_xref="CDD:238991"
misc_feature 41452..41475
/locus_tag="Cphamn1_0038"
/note="P-loop; other site"
/db_xref="CDD:238991"
misc_feature <41830..42099
/locus_tag="Cphamn1_0038"
/note="The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the energy
from hydrolysis of NTP to transfer electron or ion;
Region: Fer4_NifH; cl17203"
/db_xref="CDD:247757"
gene 42408..42713
/locus_tag="Cphamn1_0039"
/db_xref="GeneID:6373682"
CDS 42408..42713
/locus_tag="Cphamn1_0039"
/note="KEGG: gbe:GbCGDNIH1_2299 ABC transporter permease
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958509.1"
/db_xref="GI:189499039"
/db_xref="GeneID:6373682"
/translation="MLKGFGDFSEAFSPLSAALALLEMARNGDIVHHAIPSLRRVLVS
LSLAVVFALPTGVLVGYFRQLEQITYLPFQFMRQNPQGCKIATISRRFEKIRFTRRE"
gene 42815..44347
/locus_tag="Cphamn1_0040"
/db_xref="GeneID:6373683"
CDS 42815..44347
/locus_tag="Cphamn1_0040"
/note="PFAM: sodium:neurotransmitter symporter;
KEGG: pvi:Cvib_1274 sodium:neurotransmitter symporter"
/codon_start=1
/transl_table=11
/product="sodium:neurotransmitter symporter"
/protein_id="YP_001958510.1"
/db_xref="GI:189499040"
/db_xref="InterPro:IPR000175"
/db_xref="GeneID:6373683"
/translation="MSSESAGRSTWKSRSGFILAAIGSAVGLGNIWRFSYLTYENGGG
AFLIPYLVALFTAGIPLLILEFGIGHERIGSAPLAFRKIGRRWEWLGWWPLMFTMFGI
VLYYAVVIAWCIDFIFYSINLSWGDDPEAFFFQSFLNLSSSPAEIGSIQTPILAGLLA
VWLITWGISVRGVSRGVELANRIFMPLLLILTLILVFWSVTLEGAMVGIAAYLQPDFT
KLADPMVWISAYGQIFFTLSLGFGIMIAYASYMPQNSNMTGSALITALANSGFSLLSG
FGVFAVLGFMSVSRNQPLDEVVRESIGLAFVAYPKAISLIGDAGPLFGMLFFLSLTVA
GISSSISIVEAFVSGAEDKFGINRKKLSTVLCFLGFVGGIIFTTNGGLFWLDIVDHFI
NNYGLVVAGLLECIVVGWFFNLDIIRKHLNKVSNMQLGTWWNWIIKLCLPLFLSVILL
NQLIRELFTAYGDYSWASLIGIGWSWIGITFLVSFILAVQPWKTQRHLEKGRGEELLP
PV"
misc_feature 42836..44278
/locus_tag="Cphamn1_0040"
/note="uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain; Region:
SLC6sbd_u1; cd10334"
/db_xref="CDD:212042"
misc_feature order(42881..42883,42890..42892,43814..43816,43823..43828)
/locus_tag="Cphamn1_0040"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212042"
misc_feature order(42884..42889,42893..42904,43130..43132,43517..43522,
43535..43537,43541..43543,43826..43828,43835..43840)
/locus_tag="Cphamn1_0040"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212042"
misc_feature order(42887..42889,42902..42904,43520..43522,43616..43618)
/locus_tag="Cphamn1_0040"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212042"
misc_feature order(42908..42913,43127..43129,43139..43141,43148..43150,
43718..43720,43730..43732)
/locus_tag="Cphamn1_0040"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212042"
gene 44542..45867
/locus_tag="Cphamn1_0041"
/db_xref="GeneID:6373684"
CDS 44542..45867
/locus_tag="Cphamn1_0041"
/note="PFAM: RNA methylase; DNA methylase N-4/N-6 domain
protein;
KEGG: cch:Cag_1099 DNA modification methylase-like"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_001958511.1"
/db_xref="GI:189499041"
/db_xref="InterPro:IPR000241"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002295"
/db_xref="InterPro:IPR002941"
/db_xref="GeneID:6373684"
/translation="MSITKCFKKSVLTTHHTIIQGDSRQMNLLSDRSIHLVITSPPYW
QLKDYGTESQIGFHESYESYINNLNLVWSECERALYPGCRLCVNIGDQFARSVYYGRY
KVIPIRTEIIRFCETIGFDYMGAVIWQKVTTTNTTGGASIMGSFSYPRNGILKLDYEF
ILIFKKLGDAPKPTKEQKERSAMTKEEWNTYFSGHWNFAGAKQDGHIAMFPEELPRRL
IKMFAFEGDTVLDPFMGSGTTNLAARNLGRNSVGYEINSEFVEISKQKLGVNQPDLVG
TKYDFQYDTVSGDFEIAIQQLPYRFQDPHKLDKKVDPRKLSFGSRIDKENGAQREELF
TVKEALSPEKLLLSNGLTIRLLGIKSDPVLKDKAVGYLNEKIKGKRIFLKYDRKKYDE
ENNLLCYLYLQNKTFVNAHLIRSGFVGIEMDFDYKYKGKFLTLLEKVNG"
misc_feature 44587..45357
/locus_tag="Cphamn1_0041"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:223931"
misc_feature 44641..45336
/locus_tag="Cphamn1_0041"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:216568"
misc_feature 45595..45855
/locus_tag="Cphamn1_0041"
/note="Staphylococcal nuclease homologues. SNase
homologues are found in bacteria, archaea, and eukaryotes.
They contain no disufide bonds; Region: SNc; cl00140"
/db_xref="CDD:241633"
misc_feature order(45598..45600,45715..45720,45724..45726)
/locus_tag="Cphamn1_0041"
/note="Catalytic site; other site"
/db_xref="CDD:238102"
gene 45860..46306
/locus_tag="Cphamn1_0042"
/db_xref="GeneID:6373685"
CDS 45860..46306
/locus_tag="Cphamn1_0042"
/note="KEGG: sat:SYN_02435 hypothetical cytosolic protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958512.1"
/db_xref="GI:189499042"
/db_xref="GeneID:6373685"
/translation="MAKEWILNSAMNRFQLNFKRNVGPTSESIRKCAPKTLDEWRKYY
FANVKPEEHIVELGKRLYVKITEVIQSEVAEITEEDCIKYMKQLVIDRTFLGYETEIQ
TVYGQLEGLLDVKIQPAPDKWDRLYNVDFFVKVGDSYIGLQIKPIS"
misc_feature 45869..46282
/locus_tag="Cphamn1_0042"
/note="MjaI restriction endonuclease; Region: RE_MjaI;
pfam09568"
/db_xref="CDD:220294"
gene complement(46330..47856)
/locus_tag="Cphamn1_0043"
/db_xref="GeneID:6373686"
CDS complement(46330..47856)
/locus_tag="Cphamn1_0043"
/note="PFAM: transposase IS4 family protein;
KEGG: plt:Plut_0436 transposase-like"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_001958513.1"
/db_xref="GI:189499043"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:6373686"
/translation="MRGDLKIRKVRTASGATAVQVVQNKGTGRSFLKHIGSAHDEHEL
ELLLDEARKFVEAHCRQPSLFSDTDTPSTPSLFKTVLDKSSAVGVTHQFARNALLACA
RKCGLGSLPELYLDLALMRIIEPTSKLRSLDLLESYFHVSYAKRTLYRLFPKLLGYQE
EIETAAIQTARRELQEQFSLVLYDVTTLYFESFKEYDFQRPGFSKDNKPQQPQIVIGL
ITTRSDFPVMHEAFEGNTFEGKTMLKVIHRFQERVGETKPIIVADAGMLSKDNILKLE
NEGYRYIVGARMASTAVSFIDQVYKALPRTDKALHRFSYKSAVKNATMICEFSESRYK
KDKREFDKQVKRALTLLEKDEPGRRAKFVKKTKTTDKPYIFDTNLQAKAEKLLGIKGY
VTNIPEKELSSRAVIDYYHDLWNVEQAFRMSKSDLQARPIFHHTEDAIRAHMLVCFMA
LMMGKLLEIKMGRSLRQIREKIWAVHEIHLCYERTGEVCVMQMGTSEFTNKIQRFLEL
"
misc_feature complement(46474..47541)
/locus_tag="Cphamn1_0043"
/note="Transposase [DNA replication, recombination, and
repair]; Region: COG5421"
/db_xref="CDD:227708"
gene complement(48067..48372)
/locus_tag="Cphamn1_0044"
/db_xref="GeneID:6373687"
CDS complement(48067..48372)
/locus_tag="Cphamn1_0044"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958514.1"
/db_xref="GI:189499044"
/db_xref="GeneID:6373687"
/translation="MGIVGLQVGMGDRHRRLTVLSKKNIAINYQCKKHVNFLHKHYHT
NFTAMISLVMRTASRLLGASIYLFPVSIATLDCARNPLVLNVHIGLCARSALLSNRS"
gene 48597..48860
/locus_tag="Cphamn1_0045"
/db_xref="GeneID:6373688"
CDS 48597..48860
/locus_tag="Cphamn1_0045"
/note="KEGG: amr:AM1_6172 transposase, IS5 family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958515.1"
/db_xref="GI:189499045"
/db_xref="GeneID:6373688"
/translation="MAVEGKFGQGKRRYDLNRVMGRLAESRQTVVSIIFLVMNLEQLL
TVHFLRLLERFISALEFSVGVPFSNAAKRHGDICLHVELFSNP"
misc_feature <48600..48719
/locus_tag="Cphamn1_0045"
/note="Transposase DDE domain; Region: DDE_Tnp_1_2;
pfam13586"
/db_xref="CDD:222244"
gene 48910..49908
/locus_tag="Cphamn1_0046"
/db_xref="GeneID:6373689"
CDS 48910..49908
/locus_tag="Cphamn1_0046"
/note="PFAM: CHAP domain containing protein;
KEGG: ssp:SSP0609 secretory antigen precursor"
/codon_start=1
/transl_table=11
/product="CHAP domain-containing protein"
/protein_id="YP_001958516.1"
/db_xref="GI:189499046"
/db_xref="InterPro:IPR007921"
/db_xref="GeneID:6373689"
/translation="MLYDFISLARNRPIYRYIFLIFSRSWVLVIPLGVLLYSAKANGF
DKGYCTWYAAEQFNENSPAPGVNWRGHAGNWLVNADSSGWLISVDPYDAEAGSLIVWI
DSNNNTGVQGYGHVAVVDSVDLEEKKISVSEMNWGPLDPNSSPQEAKTVNFDLVTTKL
LSLNELNRAGRVSKYEFKGYIFPRLKNFRINDLLNAKYGEIVLVDGEYKKGDPWSDSN
YINVWVHKNKQDDYFVAFGDLDGDGKRDAVVTTYENYGGSGSFLSINVFINKKGRPHF
IGAVKLGQKSIKSLKVIGKMIRAVYLKHGPNDPMCCPTILEDKEYEVIGEKIISLY"
misc_feature 49018..49320
/locus_tag="Cphamn1_0046"
/note="CHAP domain; Region: CHAP; cl17642"
/db_xref="CDD:248196"
misc_feature <49048..49320
/locus_tag="Cphamn1_0046"
/note="Surface antigen [General function prediction only];
Region: COG3942"
/db_xref="CDD:226451"
gene 49910..50374
/locus_tag="Cphamn1_0047"
/db_xref="GeneID:6373690"
CDS 49910..50374
/locus_tag="Cphamn1_0047"
/note="KEGG: gfo:GFO_2191 TonB-dependent outer membrane
receptor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958517.1"
/db_xref="GI:189499047"
/db_xref="GeneID:6373690"
/translation="MICVGFLIISSIVMREKYMERKCVFMILLSVVAFLSSCEKKIEG
VIVDPFGKGVENAEVEILGSTFKSKANSKGEFGVDYVPGEIIVRFTKKGFTSHQVSLN
IRQKYSYPLDTLVMYPMPKDRRLYYMGKDGLIPLTLMKGVSEKRNNYGWTTT"
misc_feature 50033..>50209
/locus_tag="Cphamn1_0047"
/note="Carboxypeptidase regulatory-like domain; Region:
CarboxypepD_reg; pfam13620"
/db_xref="CDD:222268"
gene 50473..50577
/locus_tag="Cphamn1_0048"
/db_xref="GeneID:6373691"
CDS 50473..50577
/locus_tag="Cphamn1_0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958518.1"
/db_xref="GI:189499048"
/db_xref="GeneID:6373691"
/translation="MFIAFTITEYYHQKLHIARISPIEVIKIAASKDL"
gene complement(50574..52027)
/locus_tag="Cphamn1_0049"
/pseudo
/db_xref="GeneID:6373692"
gene 52230..52928
/locus_tag="Cphamn1_0050"
/db_xref="GeneID:6373693"
CDS 52230..52928
/locus_tag="Cphamn1_0050"
/note="PFAM: cytochrome c class I;
KEGG: cte:CT0075 cytochrome c-555"
/codon_start=1
/transl_table=11
/product="cytochrome c class I"
/protein_id="YP_001958519.1"
/db_xref="GI:189499049"
/db_xref="InterPro:IPR002323"
/db_xref="InterPro:IPR003088"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6373693"
/translation="MAFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFV
KLNNQNVFEDFTVHFPSERKYRYNGMTKDQVERIGEEQLIIRTIDLKPGMYAWVEYSI
TLGMGLMTGKEQNLTMIKVDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCA
DCHAEGVLNSPRVGDIGEWENRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERF
ANAVAYMVYQSTEK"
misc_feature 52506..52904
/locus_tag="Cphamn1_0050"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:224921"
misc_feature <52674..52916
/locus_tag="Cphamn1_0050"
/note="Cytochrome c5 [Energy production and conversion];
Region: CycB; COG3245"
/db_xref="CDD:225784"
gene complement(53329..53571)
/locus_tag="Cphamn1_0051"
/db_xref="GeneID:6373694"
CDS complement(53329..53571)
/locus_tag="Cphamn1_0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958520.1"
/db_xref="GI:189499050"
/db_xref="GeneID:6373694"
/translation="MLRNAWYTLLQNRWYSLAQNKWYSMLQKTHNEDWKPYVLKPRSS
FIETIAPFFRRHGINYPTSSIDAQVRQQQIGKPLRL"
gene 53645..55210
/locus_tag="Cphamn1_0052"
/db_xref="GeneID:6373695"
CDS 53645..55210
/locus_tag="Cphamn1_0052"
/note="PFAM: Integrase catalytic region;
KEGG: plt:Plut_1830 transposase subunit"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_001958521.1"
/db_xref="GI:189499051"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6373695"
/translation="MANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVE
RFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTR
QRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYD
PVAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNM
AQVVTKPSRYEPVFTELVEQWALHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAM
RNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEHLAPLPPKHFVYKH
QAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFV
RNGYSTIKEHMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSY
DACIGLLRLAKGFGRKRLENACSLALQGSRVTYRIVKTILENNRDKLVLPTEEQAPML
PFHENIRGKHFYN"
misc_feature 53669..53794
/locus_tag="Cphamn1_0052"
/note="Homeodomain-like domain; Region: HTH_23; pfam13384"
/db_xref="CDD:222091"
misc_feature <53921..54448
/locus_tag="Cphamn1_0052"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature 54071..54439
/locus_tag="Cphamn1_0052"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 55228..55968
/locus_tag="Cphamn1_0053"
/db_xref="GeneID:6373696"
CDS 55228..55968
/locus_tag="Cphamn1_0053"
/note="PFAM: IstB domain protein ATP-binding protein;
SMART: AAA ATPase;
KEGG: plt:Plut_1831 ATPase"
/codon_start=1
/transl_table=11
/product="IstB domain-containing protein ATP-binding
protein"
/protein_id="YP_001958522.1"
/db_xref="GI:189499052"
/db_xref="InterPro:IPR002611"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6373696"
/translation="MNTQLTLDQLRRMRLHGMAEAYDALLTLPVQEQPTADLMIGQLV
EAERIYRKEQTTRRYLQQSKIRYPALLEQIHCNTARNLSQQQLLSLADGRFIERGENV
LITGATGCGKSYLASALGRQACSLGYSTLYLSMNRMMEQLTQVKLDGTYLKWLNKLEK
TRLLIIDDFGLQPLDQPTRLALLQILEDRYGKQAAIFTAQLPVAEWHDVIAEPTIADS
ILDRLLSNAHRIELKGPSLRRQKQEKNM"
misc_feature 55228..55965
/locus_tag="Cphamn1_0053"
/note="DNA replication protein [DNA replication,
recombination, and repair]; Region: DnaC; COG1484"
/db_xref="CDD:224401"
misc_feature 55477..>55794
/locus_tag="Cphamn1_0053"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 55543..55566
/locus_tag="Cphamn1_0053"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(55546..55569,55726..55728)
/locus_tag="Cphamn1_0053"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 55714..55731
/locus_tag="Cphamn1_0053"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(56069..56590)
/locus_tag="Cphamn1_0054"
/db_xref="GeneID:6373697"
CDS complement(56069..56590)
/locus_tag="Cphamn1_0054"
/note="KEGG: sco:SCO3294 transferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958523.1"
/db_xref="GI:189499053"
/db_xref="GeneID:6373697"
/translation="MIESADELLRRDKRPPILYLRSFEDEDKEMTLGRAIRQSIFGGV
VGGGQAPYWFEQEDISVYMNWVGPYITIARPGERKIVGAARKTVNEDQWKAVVSDFIH
RTSFIILRAAVSSGLRWEIEEIVKRFDPTRLLVITATISADYRSFCQKVSSVLPEPLP
HKIPSIRLVAFNE"
gene complement(56795..57031)
/locus_tag="Cphamn1_0055"
/db_xref="GeneID:6373698"
CDS complement(56795..57031)
/locus_tag="Cphamn1_0055"
/note="KEGG: dar:Daro_1853 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958524.1"
/db_xref="GI:189499054"
/db_xref="GeneID:6373698"
/translation="MKKPALHLSYFGYGSTSRIPIPHSGLDSSYGERKELAAEPGFPA
DKMGDSAQMNMWLHKEVMKKLAENGGNIPAELLD"
misc_feature complement(56813..>56959)
/locus_tag="Cphamn1_0055"
/note="Domain of unknown function (DUF3597); Region:
DUF3597; pfam12200"
/db_xref="CDD:221459"
gene complement(57126..57470)
/locus_tag="Cphamn1_0056"
/db_xref="GeneID:6373699"
CDS complement(57126..57470)
/locus_tag="Cphamn1_0056"
/note="KEGG: syn:slr1767 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958525.1"
/db_xref="GI:189499055"
/db_xref="GeneID:6373699"
/translation="MTLWIDAHISPSIAAWINHNFANIDAKSVSALNLQYSTDKEIFA
AARKANAIIMSKDSDFLKLIDQFGAPSAFIWITCGNTSNQKMRDVLSSSLEKALDLIS
SGEPIVEISDKA"
misc_feature complement(57135..57470)
/locus_tag="Cphamn1_0056"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4634"
/db_xref="CDD:226981"
gene complement(57467..57691)
/locus_tag="Cphamn1_0057"
/db_xref="GeneID:6373700"
CDS complement(57467..57691)
/locus_tag="Cphamn1_0057"
/note="PFAM: protein of unknown function DUF433;
KEGG: ava:Ava_3038 protein of unknown function DUF433"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958526.1"
/db_xref="GI:189499056"
/db_xref="InterPro:IPR007367"
/db_xref="GeneID:6373700"
/translation="MNEWSKRITVNAEQCGGRPCIRGLRIRVIDILDLLAAGLSYDEV
IEELPDIEKEDIVAALKYASSKLDHPVIAA"
misc_feature complement(57470..57691)
/locus_tag="Cphamn1_0057"
/note="Protein of unknown function (DUF433); Region:
DUF433; cl01030"
/db_xref="CDD:242261"
gene complement(57715..58161)
/locus_tag="Cphamn1_0058"
/db_xref="GeneID:6373701"
CDS complement(57715..58161)
/locus_tag="Cphamn1_0058"
/note="PFAM: PilT protein domain protein;
KEGG: rpa:RPA1992 possible NtrR protein"
/codon_start=1
/transl_table=11
/product="PilT protein domain-containing protein"
/protein_id="YP_001958527.1"
/db_xref="GI:189499057"
/db_xref="InterPro:IPR002716"
/db_xref="GeneID:6373701"
/translation="MPLYMLDTNIAGHVIKGDIPAIREKLASVPMQHVLISSVTQAEL
LYGLAKRSYPKGLSARVHEFLIRVDILPWNHEVVTVYGDLRARCEASGISLSPLDMMI
ASHAKAADAVLVTRDRAFSRVPDGLRIETGKEIEAIMYVHFFHYFE"
misc_feature complement(57769..58149)
/locus_tag="Cphamn1_0058"
/note="PIN domain of ribonucleases (toxins), VapC and
FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus
horikoshii protein PH0500, and other similar bacterial and
archaeal homologs; Region: PIN_VapC-FitB; cd09881"
/db_xref="CDD:189051"
misc_feature complement(order(57802..57804,57856..57861,57865..57870,
57874..57876,57895..57897,57904..57909,57916..57921,
57925..57927,57940..57948,57952..57954,57976..57978,
57985..57987,58021..58029,58033..58041,58045..58050,
58060..58062,58081..58083,58090..58092,58114..58122,
58126..58131,58138..58146))
/locus_tag="Cphamn1_0058"
/note="oligomeric interface; other site"
/db_xref="CDD:189051"
misc_feature complement(order(57811..57813,57865..57867,58033..58035,
58141..58143))
/locus_tag="Cphamn1_0058"
/note="putative active site [active]"
/db_xref="CDD:189051"
misc_feature complement(order(57862..57864,57868..57873,57904..57909,
57913..57921,57925..57930,57943..57945,57970..57972,
57979..57984,58024..58029,58033..58038,58045..58050))
/locus_tag="Cphamn1_0058"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:189051"
gene complement(58170..58367)
/locus_tag="Cphamn1_0059"
/pseudo
/db_xref="GeneID:6373702"
gene complement(58520..59842)
/locus_tag="Cphamn1_0060"
/db_xref="GeneID:6373703"
CDS complement(58520..59842)
/locus_tag="Cphamn1_0060"
/note="PFAM: amidohydrolase; Amidohydrolase 3;
KEGG: mba:Mbar_A1661 hypothetical protein"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_001958528.1"
/db_xref="GI:189499058"
/db_xref="InterPro:IPR006680"
/db_xref="InterPro:IPR013108"
/db_xref="GeneID:6373703"
/translation="MGLSVNLFETNMISFTNTPSEAARSNIVITNVRIFDGESEELRE
GMNVLVEKNVIKKIQAASLPCTQNDTVIDGKGHVLMPGMINSHFHMIGAMSAQMLFSN
PTKDYRAFWLARGLQETLMQGITTIRDAGGNDWGVVRAAEEGMFNAPRIFASGALISQ
TSGHFDFRHTHIPPDSGQLSGGVTSLLDGISYIADGVDAVRKAARECLRQGAKQIKIA
SGGGIISKADPIHTLQYSAEEVRAAVEVAESWGTYVASHAYTAESAIRDIENGVMSIE
HASIMNDHAVSLGVEKEVWWSPQTVVFLHPPEGWGEAERKKLAPVAEGLEKTFELFRQ
YNAKVLFGTDCFGNMDDQHLEFVYRSRFFPPFEILRHATSNGGKALRMCGKLYPYSGD
LGVIREGAMADMLIVKNNPLEDATILSNYEEQLLLIMKDGCLYKNLLG"
misc_feature complement(58532..59779)
/locus_tag="Cphamn1_0060"
/note="Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism]; Region: HutI; COG1228"
/db_xref="CDD:224149"
misc_feature complement(<59573..59758)
/locus_tag="Cphamn1_0060"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:241750"
misc_feature complement(58589..59638)
/locus_tag="Cphamn1_0060"
/note="Metallo-dependent hydrolases, subgroup A is part of
the superfamily of metallo-dependent hydrolases, a large
group of proteins that show conservation in their
3-dimensional fold (TIM barrel) and in details of their
active site. The vast majority of the...; Region:
Met_dep_hydrolase_A; cd01299"
/db_xref="CDD:238624"
misc_feature complement(order(58811..58813,59012..59014,59072..59074,
59576..59578,59582..59584))
/locus_tag="Cphamn1_0060"
/note="active site"
/db_xref="CDD:238624"
gene complement(59817..59924)
/locus_tag="Cphamn1_0061"
/db_xref="GeneID:6373704"
CDS complement(59817..59924)
/locus_tag="Cphamn1_0061"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958529.1"
/db_xref="GI:189499059"
/db_xref="GeneID:6373704"
/translation="MLNFLTANISPDGLRDLNAEKSHVLKPYGIVGQLI"
gene 59989..60303
/locus_tag="Cphamn1_0062"
/db_xref="GeneID:6373705"
CDS 59989..60303
/locus_tag="Cphamn1_0062"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958530.1"
/db_xref="GI:189499060"
/db_xref="GeneID:6373705"
/translation="MEVSYMKGLASHHGPESCLDRQQWDGEALTGENTGVLMSSENTT
NRRLTLYYGGESNIVHPEKARNGRLRWSQRTAACVEIHYTEIGRPGKPLGQRQKTEGK
CQ"
gene 60300..61817
/locus_tag="Cphamn1_0063"
/pseudo
/db_xref="GeneID:6373706"
gene complement(61934..63109)
/locus_tag="Cphamn1_0064"
/db_xref="GeneID:6373707"
CDS complement(61934..63109)
/locus_tag="Cphamn1_0064"
/note="KEGG: aeh:Mlg_2346 ATPase (AAA+ superfamily)-like
protein"
/codon_start=1
/transl_table=11
/product="ATPase (AAA+ superfamily)-like protein"
/protein_id="YP_001958531.1"
/db_xref="GI:189499061"
/db_xref="GeneID:6373707"
/translation="MIPRSLTATLQRLAGSFPVVTITGPRQSGKTTLSRAVFPDKPYV
SLEDPAERSFAEEDPKGFLSRFDNGAVFDEAQRWPDLFSYLQGMVDEDRKPGKFIVTG
SQQFGLLAGVTQSLAGRVGITRLLPFSLGELSATYLQRLSIDRFMTTGCYPALHTEKV
KPEDWFASYVATYVERDVRQILHVQDLSSFQRFLRLCAGRNGQLLNLSTLAGETGVSH
TTARKWISVLESSYIVHLLPPYHKNFGKRLIKSPKLYFIDVGLACWLLGIRSAGLLSV
HPLRGALFESLIVSEFLKSRYNAGKPADLYFWRDNKGVECDLLFEKETRLQPIEIKSG
KTVTSDYILAGKKASRFSVENALQPWLIYGGDESYERSGVQAVGWRNIPDWVTRHDN"
misc_feature complement(62714..63064)
/locus_tag="Cphamn1_0064"
/note="AAA domain; Region: AAA_14; pfam13173"
/db_xref="CDD:221955"
misc_feature complement(62108..62590)
/locus_tag="Cphamn1_0064"
/note="Domain of unknown function (DUF4143); Region:
DUF4143; pfam13635"
/db_xref="CDD:222275"
gene complement(63214..63380)
/locus_tag="Cphamn1_0065"
/pseudo
/db_xref="GeneID:6373708"
gene 63383..63544
/locus_tag="Cphamn1_0066"
/pseudo
/db_xref="GeneID:6373709"
gene 63629..64796
/locus_tag="Cphamn1_0067"
/pseudo
/db_xref="GeneID:6373710"
gene 64936..65535
/locus_tag="Cphamn1_0068"
/db_xref="GeneID:6373711"
CDS 64936..65535
/locus_tag="Cphamn1_0068"
/note="TIGRFAM: nucleotidyltransferase substrate binding
protein, HI0074 family;
PFAM: Nucleotidyltransferase substrate binding protein
HI0074;
KEGG: cau:Caur_2869 nucleotidyltransferase substrate
binding protein, HI0074 family"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase substrate binding
protein"
/protein_id="YP_001958532.1"
/db_xref="GI:189499062"
/db_xref="InterPro:IPR010235"
/db_xref="GeneID:6373711"
/translation="MAEDPFQLEKSEQACALLLSLILVSDFVVQIASLKFNLYHFRNT
VFGQFFLAKIRRYSMNSQDIRWVQRYKHLIQAYDQLDRAVDLAQQRSLSELEEQGLIQ
SFEYTHELAWNTLKDFLANKGVQPLYGSKDTTRAAFKHRLIEDGNIWMEMIKSRYLTS
HTYNREIAEEIALAIRQHYHAAFRKLLETLEPLSREKPE"
misc_feature 65137..65508
/locus_tag="Cphamn1_0068"
/note="Nucleotidyltransferase substrate binding protein
like; Region: NTase_sub_bind; pfam08780"
/db_xref="CDD:220014"
gene 65532..65858
/locus_tag="Cphamn1_0069"
/db_xref="GeneID:6373712"
CDS 65532..65858
/locus_tag="Cphamn1_0069"
/note="PFAM: DNA polymerase beta domain protein region;
KEGG: cau:Caur_2868 DNA polymerase beta domain protein
region"
/codon_start=1
/transl_table=11
/product="DNA polymerase beta domain-containing protein"
/protein_id="YP_001958533.1"
/db_xref="GI:189499063"
/db_xref="InterPro:IPR002934"
/db_xref="GeneID:6373712"
/translation="MKYGLKNSTIAKIRSVLARYRQVEKAILYGSRAKGNYTTGSDID
LTLLGGHDLDLKVLYRIMDEIDDLLLPYTIDISLLHTIKDQDVLDHIKRFGTVFYEKT
PESHVA"
misc_feature 65550..65831
/locus_tag="Cphamn1_0069"
/note="Nucleotidyltransferase (NT) domain of
Staphylococcus aureus kanamycin nucleotidyltransferase,
and similar proteins; Region: NT_KNTase_like; cd05403"
/db_xref="CDD:143393"
misc_feature order(65616..65624,65631..65633,65652..65657,65661..65663,
65748..65750,65754..65756)
/locus_tag="Cphamn1_0069"
/note="active site"
/db_xref="CDD:143393"
misc_feature order(65616..65624,65631..65633,65652..65657,65661..65663)
/locus_tag="Cphamn1_0069"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143393"
misc_feature order(65655..65657,65661..65663,65754..65756)
/locus_tag="Cphamn1_0069"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143393"
misc_feature order(65748..65750,65754..65756)
/locus_tag="Cphamn1_0069"
/note="antibiotic binding site [chemical binding]; other
site"
/db_xref="CDD:143393"
gene complement(65972..66376)
/locus_tag="Cphamn1_0070"
/db_xref="GeneID:6373713"
CDS complement(65972..66376)
/locus_tag="Cphamn1_0070"
/note="KEGG: lch:Lcho_4189 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958534.1"
/db_xref="GI:189499064"
/db_xref="GeneID:6373713"
/translation="MGIFNNILGKLGFGKKEEEATPPATAEKAAPAPTEPAAPAAAAP
TPISEVDVVAKLEELAASHSEKLNWKTSIVDLMKLLGLDSSYAERKELAAELGCPANK
MGDSAQMNMWLHKEVMKKLAENGGNIPAELLD"
misc_feature complement(65990..>66238)
/locus_tag="Cphamn1_0070"
/note="Domain of unknown function (DUF3597); Region:
DUF3597; pfam12200"
/db_xref="CDD:221459"
gene 66567..67145
/locus_tag="Cphamn1_0071"
/db_xref="GeneID:6373714"
CDS 66567..67145
/locus_tag="Cphamn1_0071"
/note="PFAM: ErfK/YbiS/YcfS/YnhG family protein;
KEGG: sus:Acid_6997 ErfK/YbiS/YcfS/YnhG"
/codon_start=1
/transl_table=11
/product="ErfK/YbiS/YcfS/YnhG family protein"
/protein_id="YP_001958535.1"
/db_xref="GI:189499065"
/db_xref="InterPro:IPR005490"
/db_xref="GeneID:6373714"
/translation="MKETRSHSLSVPFLIANATVLMMVWQQLSAVPPSAKIESDGYGS
SIGLDKGVTADSLVAQKGERLLHLYSGGAAVKSYRIALGFNPVGAKLRQGDGKTPEGR
YSISERNPQSSYHLSLRISYPDTKDRNRAGKAGVSPGGDIFIHGWPDSIVRKHASPPA
GDWTQGCIAVTNDEIEELWKAVPVGTPVIIYP"
sig_peptide 66567..66659
/locus_tag="Cphamn1_0071"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.660) with cleavage site probability 0.497 at
residue 31"
misc_feature 66756..67136
/locus_tag="Cphamn1_0071"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:217702"
gene complement(67205..69229)
/locus_tag="Cphamn1_0072"
/db_xref="GeneID:6373715"
CDS complement(67205..69229)
/locus_tag="Cphamn1_0072"
/note="KEGG: pvi:Cvib_1453 ATP-dependent DNA helicase
RecQ;
TIGRFAM: ATP-dependent DNA helicase, RecQ family;
ATP-dependent DNA helicase RecQ;
PFAM: helicase domain protein; HRDC domain protein;
DEAD/DEAH box helicase domain protein; Helicase
superfamily 1 and 2 ATP-binding;
SMART: DEAD-like helicases"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecQ"
/protein_id="YP_001958536.1"
/db_xref="GI:189499066"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002121"
/db_xref="InterPro:IPR004589"
/db_xref="InterPro:IPR006293"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:6373715"
/translation="MSTRTAHDNFSRFLYEKKSFFQNNATWFSEQIKDKDRYRMLQTV
PGNHFDRKKSMTNEPRQPVPDKALFDTLHKVFGFHSFRPNQENIVRAILDGRDVFAVM
PTGGGKSLCYQLPAVLLSGTCVVISPLIALMKDQVDGARANGIRAAYLNSSLSPEEQA
SVQQELLSDSLDLLYVAPERFRLEHFQKLLGEVNISMAVVDEAHCISEWGHDFRPDYL
LLSALVQLFPGVPVAAFTATATLKVQQDILHKLSLRDPLLVRASFDRSNLFYDIRFKE
NANAQLVSILKSNPGQAGIIYRTSRKSVNETAALLKAKGFRALPYHAGLSDEERQRNQ
EAFIRDEADIIVATIAFGMGIDKSNIRLVIHADLPKSIESYYQETGRAGRDGEPARCT
LLFSQSDIPKIRFFIDTIVDETERGKALSSLQKVISFVSTSVCRRKTLLDYFDETYPH
DNCKSCDICLGTREVVDSTVEAQMLLSAIARTEERFGATHIVDIVTGSKNQKIRDFGH
DRLKTYGVGKGRSKKFWRQLIDELLAQKVIAKSEGLYPALYLLEKAVPLLKGEEKLEI
VRIQEPKKAKTSKAAEEGSWDHNLFDLLRSLRKEIADEQNIPPYIVFSDRSLRDMATV
HPVTGEAMLSVSGVGEVKLERYGRRFLQLIGRYREEHPESASAHKKHSSP"
misc_feature complement(67259..69028)
/locus_tag="Cphamn1_0072"
/note="ATP-dependent DNA helicase RecQ; Region: recQ;
TIGR01389"
/db_xref="CDD:130456"
misc_feature complement(<68894..68998)
/locus_tag="Cphamn1_0072"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cl17251"
/db_xref="CDD:247805"
misc_feature complement(68516..68944)
/locus_tag="Cphamn1_0072"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature complement(68903..68917)
/locus_tag="Cphamn1_0072"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature complement(68618..68629)
/locus_tag="Cphamn1_0072"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature complement(68048..68431)
/locus_tag="Cphamn1_0072"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature complement(order(68180..68188,68261..68266,68324..68335))
/locus_tag="Cphamn1_0072"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(68078..68080,68087..68089,68099..68101,
68162..68164))
/locus_tag="Cphamn1_0072"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
misc_feature complement(67556..67831)
/locus_tag="Cphamn1_0072"
/note="This DNA-binding domain is found in the RecQ
helicase among others and has a helix-turn-helix
structure; Region: RQC; smart00956"
/db_xref="CDD:214936"
misc_feature complement(67268..67471)
/locus_tag="Cphamn1_0072"
/note="HRDC domain; Region: HRDC; pfam00570"
/db_xref="CDD:201312"
gene 69330..70388
/locus_tag="Cphamn1_0073"
/db_xref="GeneID:6373716"
CDS 69330..70388
/locus_tag="Cphamn1_0073"
/note="PFAM: Radical SAM domain protein;
KEGG: cch:Cag_1591 hypothetical protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001958537.1"
/db_xref="GI:189499067"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6373716"
/translation="METKISLHKRMSSLAEAPEQVRVLEKTDCGIERFQSKLAGTGDA
PLCAEAITVLQVNTGYRCNLFCRHCHVDAAPDRKEMMSRETMRDCLEAISKSSAIRTL
DITGGAPEMNPELPWFIREARKRMPDGDIFVRTNLVILVSGEKYSHFPELFRENRVKL
IASLPCYTQENVDAQRGEGVFHRSIEALKTLNAIGYGKEGSGLEMNLVYNPGGPSLPG
EQQALEVDYKNRLLETFGIDFSHLYTITNMPISRFLETLLDEGRFCEYMNLLVENFSP
QAVKNLMCRSTVSVGWDGVLYDCDFNQMLQTSLLSPSPGHISEFDEKLLRRRKIAVGQ
HCYGCSAGAGSSCQGSLL"
misc_feature 69462..70340
/locus_tag="Cphamn1_0073"
/note="radical SAM/Cys-rich domain protein; Region:
rSAM_SeCys; TIGR04167"
/db_xref="CDD:234488"
misc_feature 69495..70139
/locus_tag="Cphamn1_0073"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(69513..69515,69519..69521,69525..69527,69531..69539,
69642..69644,69648..69653,69729..69737,69816..69818,
69951..69953,70050..70055)
/locus_tag="Cphamn1_0073"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 69975..70340
/locus_tag="Cphamn1_0073"
/note="Protein of unknown function (DUF3641); Region:
DUF3641; pfam12345"
/db_xref="CDD:221540"
gene 70536..72833
/locus_tag="Cphamn1_0074"
/db_xref="GeneID:6373717"
CDS 70536..72833
/locus_tag="Cphamn1_0074"
/EC_number="1.6.99.5"
/note="subunit A of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved with K+"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit A"
/protein_id="YP_001958538.1"
/db_xref="GI:189499068"
/db_xref="InterPro:IPR001516"
/db_xref="InterPro:IPR001750"
/db_xref="InterPro:IPR002114"
/db_xref="InterPro:IPR003916"
/db_xref="InterPro:IPR003918"
/db_xref="GeneID:6373717"
/translation="MLILLVIGFLASAIAPLLYKRFRENFGWIAVVFPLFMFFGFLSK
YPTIAAGEVLRESVPWVPSLGINFSFVLDGLSMTFALIITLIGAAVFLYAGAYMKAYV
QTGRFYVYIGIFMTSMLGLVLSDNMLLMFVFWELTSISSFLLIGFTHHKEASRKSALQ
ALLVTGGGGLALLVGIIMLYRVTGSFEISSFYDMNGVITAHSLYPAIVVLLLIGAFTK
SAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLIARMNHEIGGTPVWQDTVLIAG
ASTMLFTALLSFRQTDLKKLLAYSTLSVLGTLVMLLGIGSELAIKAFFIYIIAHSLYK
GTLFLVAGTLDHATGTRDVTKLGGLRKLMPVTAFTAGLASFSMMGVIPLVGFIGKETV
YKAILGLEYWGGFLIVAALFANAFVVMITLLVGFKPFWGAMLPTPKQPEEAPLKMLIG
PALLAVLGLLFGLFPDFFIATMLEQSAQSILSEKLSLKISIWEGFNLVLLLSFVTLLL
GGLVYLIRGRVADRMKHVSLPAVIKPSAWYDGAMAGLLSFATLQTRIVQNGYLRNYII
VILVTALSLASFAFYQAVEELIITPDFSITFYEGALAFIILVSTFLLITSRSRLKSIV
ALGALGFSIGIIFVIYGAPDLALTTFAIETLNVILFVLVLYRLPRFLKLSRSSNRVRD
SLIATCVGVFMTLTVLFATSFELSSELKRYFAEASVPYGKGHNVVNVILVDFRAIDTL
GEITVLAVAALGVFALLKLKPQGRE"
misc_feature 70566..72827
/locus_tag="Cphamn1_0074"
/note="putative monovalent cation/H+ antiporter subunit A;
Reviewed; Region: PRK12647"
/db_xref="CDD:237156"
misc_feature 70710..70874
/locus_tag="Cphamn1_0074"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature 70905..71711
/locus_tag="Cphamn1_0074"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
misc_feature 72381..72767
/locus_tag="Cphamn1_0074"
/note="Multisubunit Na+/H+ antiporter, MnhB subunit
[Inorganic ion transport and metabolism]; Region: MnhB;
COG2111"
/db_xref="CDD:225022"
gene 72836..73252
/locus_tag="Cphamn1_0075"
/db_xref="GeneID:6373718"
CDS 72836..73252
/locus_tag="Cphamn1_0075"
/note="subunit B of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit B"
/protein_id="YP_001958539.1"
/db_xref="GI:189499069"
/db_xref="InterPro:IPR007182"
/db_xref="GeneID:6373718"
/translation="MYSVILATASRYLLILLLMFSVFLLLRGHNEPGGGFTGGLVAAA
AYALYFIANGIDAARTIVRFDPLRIMAAGLLIAIASTFPSLVAGNPFMTGVWINTGIP
LIGKVGSPLLFDLGVYFLVLGIALTIIFSLAEEDRL"
misc_feature 72836..73246
/locus_tag="Cphamn1_0075"
/note="putative monovalent cation/H+ antiporter subunit B;
Reviewed; Region: PRK12509"
/db_xref="CDD:237122"
gene 73249..73614
/locus_tag="Cphamn1_0076"
/db_xref="GeneID:6373719"
CDS 73249..73614
/locus_tag="Cphamn1_0076"
/note="subunit C of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit C"
/protein_id="YP_001958540.1"
/db_xref="GI:189499070"
/db_xref="InterPro:IPR001133"
/db_xref="InterPro:IPR006672"
/db_xref="GeneID:6373719"
/translation="MTFLLAVIIGVLYAAGTYLILRRSMVKVIFGLIFLGHAANLMIF
TVGRLTKGAPAFVPEGMEGFTEPFADPLPQALILTAIVIGFGVQAFTIVLFKRTYQTV
GTEDLDKMKSTDQLPGEEL"
misc_feature 73249..73599
/locus_tag="Cphamn1_0076"
/note="putative monovalent cation/H+ antiporter subunit C;
Reviewed; Region: PRK12659"
/db_xref="CDD:183659"
gene 73626..75128
/locus_tag="Cphamn1_0077"
/db_xref="GeneID:6373720"
CDS 73626..75128
/locus_tag="Cphamn1_0077"
/EC_number="1.6.99.5"
/note="PFAM: NADH/Ubiquinone/plastoquinone (complex I);
KEGG: pvi:Cvib_1260 NADH dehydrogenase (quinone)"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase (quinone)"
/protein_id="YP_001958541.1"
/db_xref="GI:189499071"
/db_xref="InterPro:IPR001750"
/db_xref="InterPro:IPR003916"
/db_xref="InterPro:IPR003918"
/db_xref="GeneID:6373720"
/translation="MLPILLPLCTAVVMIFFRRLVVLHRFLNVAGTALMLGVSLVMLG
NVQSGGILSLQIGGWQAPFGISLVADMLSSIMVVATALIGFTTALYSLGTIDKDKEHF
FYHPLLQLLLMGINGAFLTEDIFNLYVWFEVMLISSFVLLVLGGKPEQLEGAMKYVTL
NLLSSSIFLAAVGILYGIAGTLNMADLAVRIPMLGHKDLLSVVAVLFMITFGIKAAIF
PLFFWLPASYHTPPVAVSAIFAGLLTKVGVYAIMRMFTTVLIHEEAALIHQLLLVLSA
FTMVVGVLGAVAQYDMRKLLSFHIISQIGYMIFALAIQSPLAIAGALFYIVHNIVAKT
NLFYISGLVNRLKGSWDLRRIGGVYRFYPMLGVLFLVPALGLAGIPPLSGFWAKFVVI
KAGIDSEHYLLVGIALFVSMLTLYSMIKIWNEAFWKDDPRGEGSVEDEGYLLISSMKK
VAMVVPIVILGSVTVVFGFWFEPFFVIVQSAAVELLDQGNYIQAVLGERP"
misc_feature 73629..75125
/locus_tag="Cphamn1_0077"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK12663"
/db_xref="CDD:237163"
misc_feature 73992..74801
/locus_tag="Cphamn1_0077"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 75125..75598
/locus_tag="Cphamn1_0078"
/db_xref="GeneID:6373721"
CDS 75125..75598
/locus_tag="Cphamn1_0078"
/note="subunit E of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="monovalent cation/H+ antiporter subunit E"
/protein_id="YP_001958542.1"
/db_xref="GI:189499072"
/db_xref="InterPro:IPR002758"
/db_xref="GeneID:6373721"
/translation="MNLFLFNILLAIAWMLLVGEVSAGTFTGGMIVGYLILWLSRFAW
GDTKYFRKIPLVIMFVLYFLKELIKANLKVAFDIVTPKDYMEPGIIAVPLDVQSDIEI
TLFANLVTLTPGTLSLDVSPDRKILYVHALYVTDADGFRRELKNGLEKRLIGVMR"
misc_feature 75125..75595
/locus_tag="Cphamn1_0078"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK12651"
/db_xref="CDD:237159"
sig_peptide 75125..75196
/locus_tag="Cphamn1_0078"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.983) with cleavage site probability 0.977 at
residue 24"
gene 75595..75870
/locus_tag="Cphamn1_0079"
/db_xref="GeneID:6373722"
CDS 75595..75870
/locus_tag="Cphamn1_0079"
/note="PFAM: multiple resistance and pH regulation protein
F;
KEGG: pvi:Cvib_1262 multiple resistance and pH regulation
protein F"
/codon_start=1
/transl_table=11
/product="multiple resistance and pH regulation protein F"
/protein_id="YP_001958543.1"
/db_xref="GI:189499073"
/db_xref="InterPro:IPR007208"
/db_xref="GeneID:6373722"
/translation="MSFIEWAVQASVFIIGLSILIIFLRLVIGPGIEDRIVALDLLSA
NAIAFIAVYSIQKNTTTFLDVGIIVALLAFLGTVAFGYYLGRRQKHD"
misc_feature <75673..75855
/locus_tag="Cphamn1_0079"
/note="putative monovalent cation/H+ antiporter subunit F;
Reviewed; Region: PRK12599"
/db_xref="CDD:237148"
gene 75863..76192
/locus_tag="Cphamn1_0080"
/db_xref="GeneID:6373723"
CDS 75863..76192
/locus_tag="Cphamn1_0080"
/note="TIGRFAM: monovalent cation/proton antiporter,
MnhG/PhaG subunit;
PFAM: Na+/H+ antiporter subunit;
KEGG: pvi:Cvib_1263 monovalent cation/proton antiporter,
MnhG/PhaG subunit"
/codon_start=1
/transl_table=11
/product="monovalent cation/proton antiporter subunit
MnhG/PhaG"
/protein_id="YP_001958544.1"
/db_xref="GI:189499074"
/db_xref="InterPro:IPR005133"
/db_xref="GeneID:6373723"
/translation="MIEILSGIFLLLGTLFILLSAIGILKMPDLYTRMSATTKASTLG
IGLVLIGTGIYWQDFGIASRAVAIIVFLFLTAPVAAHIIGRAAYFNKVPLWEKTKTDE
LGERRDT"
misc_feature <75923..76156
/locus_tag="Cphamn1_0080"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12674"
/db_xref="CDD:237169"
gene 76319..76807
/locus_tag="Cphamn1_0081"
/db_xref="GeneID:6373724"
CDS 76319..76807
/locus_tag="Cphamn1_0081"
/note="KEGG: pvi:Cvib_0746 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958545.1"
/db_xref="GI:189499075"
/db_xref="GeneID:6373724"
/translation="MAGKKSLLKEMKNTFFLHPVAAHFSNGLIPVAVLYLLLTLPFSD
PFFERTVEHLIIIVLFAVPVSFFSGIHDWTKNYKRAKAPVFLKKIKLSIVLFLLVVTT
VALRLSFPDIMFQNDWLHWVYIVLLLATLPVVTLLGHYGGKLAGAAKQASRRKQGLLN
KF"
gene 76920..77174
/locus_tag="Cphamn1_0082"
/db_xref="GeneID:6373725"
CDS 76920..77174
/locus_tag="Cphamn1_0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958546.1"
/db_xref="GI:189499076"
/db_xref="GeneID:6373725"
/translation="MQCIKGKLPSTSATMVSLSIFVMNLQKLLEVQFLRQIGSLLLLS
AAKMAEYGSLGLLKFVWRDIMSQKSGSAETGLFAHYSIAV"
gene complement(77291..77512)
/locus_tag="Cphamn1_0083"
/db_xref="GeneID:6373726"
CDS complement(77291..77512)
/locus_tag="Cphamn1_0083"
/note="PFAM: protein of unknown function nitrogen
fixation"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958547.1"
/db_xref="GI:189499077"
/db_xref="InterPro:IPR012903"
/db_xref="GeneID:6373726"
/translation="MSLDDARLFIDRVRSDDDFSTRLSQTETIENRLRIARVEGFEFT
IEEFENALVYYGGELMNPRLARLIHSDTG"
misc_feature complement(77366..77512)
/locus_tag="Cphamn1_0083"
/note="Nitrogen fixation protein of unknown function;
Region: Nif11; pfam07862"
/db_xref="CDD:219612"
gene complement(77519..77857)
/locus_tag="Cphamn1_0084"
/db_xref="GeneID:6373727"
CDS complement(77519..77857)
/locus_tag="Cphamn1_0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958548.1"
/db_xref="GI:189499078"
/db_xref="GeneID:6373727"
/translation="MANTEKKGGFFSRFKKDSTIEPPEKPPEAAPAKQTKPTASAPSP
AKTAPAEDISEQTRSDVLEPVDTAASIEAFFKTMLSLSVEHLKMADNTIKAATENLDK
LTDSLKGKQQ"
misc_feature complement(<77525..77671)
/locus_tag="Cphamn1_0084"
/note="xylose isomerase; Region: xylose_isom_A; TIGR02630"
/db_xref="CDD:233956"
gene 78018..78611
/locus_tag="Cphamn1_0085"
/db_xref="GeneID:6373728"
CDS 78018..78611
/locus_tag="Cphamn1_0085"
/note="PFAM: NAD(P)H dehydrogenase (quinone);
KEGG: gvi:glr1342 probable NADP(H) oxidoreductase"
/codon_start=1
/transl_table=11
/product="NAD(P)H dehydrogenase (quinone)"
/protein_id="YP_001958549.1"
/db_xref="GI:189499079"
/db_xref="InterPro:IPR003680"
/db_xref="GeneID:6373728"
/translation="MVLRKILIVFAHPALEKSRVNSKLIEEVGAIEGVTFHDLYELYP
DMDINVKAEQELLKEHDLVLFQYPFILFGMPALLKEWMDLVLVHGWAFGRNGNALKGK
WACHIVTTGGSKASYSREGYNRHTMKELLVPLEQIARLCGMRYLPPYVIHGTNVMKQK
SIDEHAKHYQAMLRMLADESFDPASRDAQEYLNERFS"
misc_feature 78030..78539
/locus_tag="Cphamn1_0085"
/note="Flavodoxin-like fold; Region: Flavodoxin_2;
cl00438"
/db_xref="CDD:241863"
gene 78632..80533
/locus_tag="Cphamn1_0086"
/db_xref="GeneID:6373729"
CDS 78632..80533
/locus_tag="Cphamn1_0086"
/note="TIGRFAM: potassium efflux system protein;
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger;
KEGG: gvi:glr1343 glutathione-regulated potassium efflux
system protein KefC homolog"
/codon_start=1
/transl_table=11
/product="potassium efflux system protein"
/protein_id="YP_001958550.1"
/db_xref="GI:189499080"
/db_xref="InterPro:IPR003148"
/db_xref="InterPro:IPR004771"
/db_xref="InterPro:IPR006036"
/db_xref="InterPro:IPR006153"
/db_xref="GeneID:6373729"
/translation="MHEGGFFFQAFVYLTAAVVSVPVAKKLGLGSVLGYLIAGIIIGP
FVLGLIGEEGQNVMQFAEFGIIMMLFLIGLELKPSMIWKLKGSIFGMGGAQVFTTALI
VMAIAIMFGLQWKTSLALGLVLALSSTAIVLQTLHEKGLMKTDGGQNSFSVLLFQDIA
IIPILAMLPLLATGHAAVHEAHGEGATQAFQAWMDGLPIWGQTIAVLGVVAGIILAGR
YLVNPAFRLIALTRLREMFTAAALLLVIGITVLMGMVGLSPALGAFIAGVVLAQSEYR
HELETNIEPFKGLLLGLFFISVGASIDFLVIASNPLVILELVAALIILKFLILAAIGR
VFRMSFDNILLFALALAEGGEFAFVLFSFGLNNGVFEASLVNPLIAVVALSMAMTPML
VLLNEKLIQPRFGTKEMPEKVPDRIDKRSRVIVAGFGRVGSVVGRFMQANDEEATYLD
ADPDNVELLRKMGLQVFYGDASRSGLLEAAGAAEAELLVIAEDNTEKVVEIARTARKY
FPHLEIIARASGWDDSYELIDMGVSKIYLDTLDSALRIGGDALSRLGHRKYHVRRAMN
TFRRHEENHVYELAEMRHDKKELIRATKQRIEDLEQLMMDEREELHKDKNLGWDTSGH
TNDEHLMRS"
misc_feature 78632..80488
/locus_tag="Cphamn1_0086"
/note="glutathione-regulated potassium-efflux system
protein KefC; Provisional; Region: PRK03562"
/db_xref="CDD:235131"
misc_feature 78671..79540
/locus_tag="Cphamn1_0086"
/note="transporter, monovalent cation:proton antiporter-2
(CPA2) family; Region: 2a37; TIGR00932"
/db_xref="CDD:233195"
misc_feature <79976..80236
/locus_tag="Cphamn1_0086"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
gene complement(80701..82158)
/locus_tag="Cphamn1_0087"
/db_xref="GeneID:6373730"
CDS complement(80701..82158)
/locus_tag="Cphamn1_0087"
/note="PFAM: cation transporter;
KEGG: dps:DP0723 trk system potassium uptake protein
(TrkH)"
/codon_start=1
/transl_table=11
/product="cation transporter"
/protein_id="YP_001958551.1"
/db_xref="GI:189499081"
/db_xref="InterPro:IPR003445"
/db_xref="GeneID:6373730"
/translation="MNFPAISHVLGALLMFIGSTMLLPLACALIYNDGDALSLLISMG
VTVSIGFPFWWSFRKYRDLTLKDGLFIVTFGWILVSSVSALPFMLHGTIPSFTDAFFE
MMSGYTTTGATILDDIESVPHGLLFWRSTTHLIGGMGFIMVTIIILPLLGIGGMQLYK
AEADPGQVITGEKFLPRVKQTAVWLWGIYLALILIQSLLLWIGGMPVFDSLCHAFGTV
STSGYSTKNSSIGYYDSAWIDWITIIFMFLGGMAFMMHYHILKKDWEPVRNNTEIRWY
IGFVVFISLLATLILWATGSYSGFFDSIRHATFQVVSILTTTGFTTADYELWPQSAQM
LLMIACFIGACAGSTTSGIKVVHYEIICKYLYANGRKFLQPLAVVPIKINQKNVASSV
VTLAVSYFILNIFMIFVGSAIMTLIDDMDFFSSMSAVISALFNIGPAFGEVGPTHTFS
HVSTAGKWFLSFNMLTGRLEMFTVMVMFYPSFWKK"
misc_feature complement(80704..82158)
/locus_tag="Cphamn1_0087"
/note="Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism]; Region: TrkG;
COG0168"
/db_xref="CDD:223246"
sig_peptide complement(82078..82158)
/locus_tag="Cphamn1_0087"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.926) with cleavage site probability 0.595 at
residue 27"
misc_feature complement(80755..81915)
/locus_tag="Cphamn1_0087"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:233196"
gene complement(82189..83577)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/db_xref="GeneID:6373731"
CDS complement(82189..83577)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="involved in potassium uptake; found to be
peripherally associated with the inner membrane in
Escherichia coli; contains an NAD-binding domain"
/codon_start=1
/transl_table=11
/product="potassium transporter peripheral membrane
protein"
/protein_id="YP_001958552.1"
/db_xref="GI:189499082"
/db_xref="InterPro:IPR003148"
/db_xref="InterPro:IPR006036"
/db_xref="InterPro:IPR006037"
/db_xref="GeneID:6373731"
/translation="MSVTNILVIGLGGVGLHVAQRLVHDGYGVTVIESSPQLINSVND
KIDAKIIEGNAMELACWKRAKAETMDLMIAVTNEDSVNMIASIIADRFGIPRKIARVR
SPEYGYENSFLNKSDFKIDLVIHPEELVAQEMARLVMRASANDVVDIGEGEMKVVAMR
VSQDSPVVNKTLKEIALLHNDFQFKIVAVARGIATIIPGDDDTILTNDQIFIMLNGKN
LSRLMNLMNVREQSIHKVMIVGGGMVGARVAKLLGKTVKITLIENDKEHAEELASSLN
NTDVLLGDGTDVNVMVLGGLMEMDSFIATTGNNETNIISCLLAKHIMNRTNVDANATV
GKTIALVKKEDYLVLASTIGLDVALNKKISAADEIMKFIRMGELFSLAHLHGVDAEVI
ELAASPRSQITKKPLKKMRTMLQDKQILIAGVVRDGLCELTDEHTVIEPNDLAVVVSA
TKSLKDARELFN"
misc_feature complement(82192..83529)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="potassium transporter peripheral membrane
component; Reviewed; Region: trkA; PRK09496"
/db_xref="CDD:236541"
misc_feature complement(83200..83529)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(82897..83112)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
misc_feature complement(82498..82872)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:216949"
misc_feature complement(82192..82407)
/gene="trkA"
/locus_tag="Cphamn1_0088"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:216867"
gene complement(83730..84500)
/locus_tag="Cphamn1_0089"
/db_xref="GeneID:6373732"
CDS complement(83730..84500)
/locus_tag="Cphamn1_0089"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958553.1"
/db_xref="GI:189499083"
/db_xref="GeneID:6373732"
/translation="MKIPGKSFLIAALLLACILFPFQRKVTAKTYYHVTLKAFLDPHD
VSAVEWAWVTLVAIPKNEAYPEEAALAESYGGSLRGSVLAFVRAAAWRSEHRYTIEKR
CKDRPAEMKISWNESWNDSVYAMGGLDNPNNPDELHFGFTTRPIFLQNKRWFDPMSRS
YAALGPVRLEGEAAEEIRGNFILRPVNYRDALKHYNFCGKQWVEQYRSEFNHFHLHEE
FYDDDNEIFNQTIGKKHIVYQVLRTSSRIHPNWKQQRM"
sig_peptide complement(84414..84500)
/locus_tag="Cphamn1_0089"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.954 at
residue 29"
gene 84605..85177
/locus_tag="Cphamn1_0090"
/db_xref="GeneID:6373733"
CDS 84605..85177
/locus_tag="Cphamn1_0090"
/EC_number="1.8.4.11"
/note="TIGRFAM: methionine-R-sulfoxide reductase;
PFAM: Methionine sulfoxide reductase B;
KEGG: cte:CT0103 PilB-related protein"
/codon_start=1
/transl_table=11
/product="methionine-R-sulfoxide reductase"
/protein_id="YP_001958554.1"
/db_xref="GI:189499084"
/db_xref="InterPro:IPR002579"
/db_xref="GeneID:6373733"
/translation="MHSTVRCLKAPQAVLFLLLMLPALLAGCGGATFPENEKDDSMIS
KQEKPGNPYYSRTDTTTLDLPDSVWAKVLTKEVYRVARQKETEQAFSGKFLDFEGRGS
YFCAACGNALFRSDAKFADTCGWPSFFEPVREKSIFYQPDTSHGLVRTEVICGRCGAH
LGHVFDDGPPPTGKRFCMNSIVLDFEPDGE"
sig_peptide 84605..84697
/locus_tag="Cphamn1_0090"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.850) with cleavage site probability 0.465 at
residue 31"
misc_feature 84797..85174
/locus_tag="Cphamn1_0090"
/note="Conserved domain frequently associated with peptide
methionine sulfoxide reductase [Posttranslational
modification, protein turnover, chaperones]; Region:
COG0229; cl15841"
/db_xref="CDD:247098"
misc_feature 84800..85168
/locus_tag="Cphamn1_0090"
/note="SelR domain; Region: SelR; pfam01641"
/db_xref="CDD:201899"
gene complement(85202..86410)
/locus_tag="Cphamn1_0091"
/db_xref="GeneID:6373734"
CDS complement(85202..86410)
/locus_tag="Cphamn1_0091"
/EC_number="3.6.3.16"
/note="KEGG: cte:CT0116 ArsA ATPase family protein;
TIGRFAM: arsenite-activated ATPase ArsA;
PFAM: Anion-transporting ATPase"
/codon_start=1
/transl_table=11
/product="arsenite-activated ATPase ArsA"
/protein_id="YP_001958555.1"
/db_xref="GI:189499085"
/db_xref="InterPro:IPR003348"
/db_xref="InterPro:IPR008162"
/db_xref="GeneID:6373734"
/translation="MRNIVYTGKGGVGKTTIAAATALKAATMGYKTLVISTDPAHSLG
DSFDRELGSSPVAIADNLYGQEVSVYGDLSLNWEIVREHFAHLMEVQGIKGIYVEEMG
VLPGMEELFSLSYIKKYNESDDYDLLVVDCAPTGETLRLLSIPETFGWMLKLMRNMEK
YVVKPLIRPISKRVGKLHDVVPEEDVYNQVDHLFSSVEGIIDLLSDGSKTTVRLVMNP
EKMVLKETMRALTYLNLYGITVDQIVVNRVLLDEVDGKFLSEWKEIQKKYLDQIDRTF
SPIPIIQVPFFRQEVVGLDMLEKVGEIVYRDSDPLDILYREEHVNIKKQDEGHYIMKL
RAPFIFDNNMEANIVQVGELMTVRIGNYQKGVILPAFLAGLRVSSANYKEKWLVVEFK
KKEKDATKSE"
misc_feature complement(85496..86329)
/locus_tag="Cphamn1_0091"
/note="Anion-transporting ATPase; Region: ArsA_ATPase;
pfam02374"
/db_xref="CDD:217004"
misc_feature complement(85559..86329)
/locus_tag="Cphamn1_0091"
/note="ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular concentration
of oxyanion produces...; Region: ArsA; cd02035"
/db_xref="CDD:238992"
misc_feature complement(order(85997..86020,86291..86299))
/locus_tag="Cphamn1_0091"
/note="DTAP/Switch II; other site"
/db_xref="CDD:238992"
misc_feature complement(86291..86299)
/locus_tag="Cphamn1_0091"
/note="Switch I; other site"
/db_xref="CDD:238992"
gene complement(86514..86696)
/locus_tag="Cphamn1_0092"
/db_xref="GeneID:6373735"
CDS complement(86514..86696)
/locus_tag="Cphamn1_0092"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958556.1"
/db_xref="GI:189499086"
/db_xref="GeneID:6373735"
/translation="MTRKSDFMDKIFEQMNTRDAQIDKLRVQIEETSTDLKEEYHKTL
NKLKEQKTPFNSMIAS"
gene complement(86755..87069)
/locus_tag="Cphamn1_0093"
/db_xref="GeneID:6373736"
CDS complement(86755..87069)
/locus_tag="Cphamn1_0093"
/note="KEGG: cte:CT0121 potassium channel protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958557.1"
/db_xref="GI:189499087"
/db_xref="GeneID:6373736"
/translation="MLPYASFQVNGTHIGNHKRIVACYCNLNESSPLQGKTFREADRY
NNCQVNVVSYKLPAGERHSTPKPSEVMQKDGTRIAIGHLPPIPTFQSKKLIATCFVLC
SR"
gene complement(87304..87507)
/locus_tag="Cphamn1_0094"
/db_xref="GeneID:6373737"
CDS complement(87304..87507)
/locus_tag="Cphamn1_0094"
/note="PFAM: Ion transport 2 domain protein;
KEGG: cte:CT0121 potassium channel protein"
/codon_start=1
/transl_table=11
/product="Ion transport 2 domain-containing protein"
/protein_id="YP_001958558.1"
/db_xref="GI:189499088"
/db_xref="InterPro:IPR013099"
/db_xref="GeneID:6373737"
/translation="MAGYMISEGMTPVDALYMTIITLSTVGFNQVQTLSEAGRLFALA
LIIGGISLFFFTLTYVERLLSML"
misc_feature complement(87328..>87489)
/locus_tag="Cphamn1_0094"
/note="Ion channel; Region: Ion_trans_2; pfam07885"
/db_xref="CDD:219619"
gene complement(87607..88209)
/locus_tag="Cphamn1_0095"
/db_xref="GeneID:6373738"
CDS complement(87607..88209)
/locus_tag="Cphamn1_0095"
/note="KEGG: pvi:Cvib_0135 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958559.1"
/db_xref="GI:189499089"
/db_xref="GeneID:6373738"
/translation="MEAHGHTKGEYLFHADLEKTSTYLADQKKVMAFNPFCEHVEATD
IENIYKWHFQVTDPRDNPFQVIFYVQQHDELLVSLPDDYPYESEISLPDEIVQKYTTG
KKIRWEPYKMTYNVNDPDNYIFEGKVNAEMTLFEHHENQTTVNFLMDVDITFELYPIF
RIFPEKIITTMTNAGMSMIMQISANQMFQSILSDFRSIHR"
gene complement(88279..89352)
/gene="prfA"
/locus_tag="Cphamn1_0096"
/db_xref="GeneID:6373739"
CDS complement(88279..89352)
/gene="prfA"
/locus_tag="Cphamn1_0096"
/note="recognizes the termination signals UAG and UAA
during protein translation a specificity which is
dependent on amino acid residues residing in loops of the
L-shaped tRNA-like molecule of RF1; this protein is
similar to release factor 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 1"
/protein_id="YP_001958560.1"
/db_xref="GI:189499090"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR004373"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:6373739"
/translation="MLEKLEALKDKYLRLEEQLSDPEIIADQKRFRKLNKEYSDLKEI
VQGYDRYKSNKVQIEEVRKMLKQETDPEMKSLALVELEELQELQPELDQQLKLLLLPK
EEADSRNVIIEIRAGTGGDEAALFATDLLRMYQKFAERKGWKCDMMEFNEASIPGACK
EAILSISGHDVYATMKFESGVHRVQRVPETETQGRIHTSAASVAVLPEAEDVDIEIRK
DDLQLDTFRSGGKGGQNVNKVETAVRITHTPSGIVVACQEERSQLQNRERAMKMLRAK
LYDQQLAEKNRERADLRRSMVTTGDRSAKIRTYNFPQSRVTDHRIGYTSHALPQILEG
NLDDIIEALKLHDQTARLQAEAI"
misc_feature complement(88285..89352)
/gene="prfA"
/locus_tag="Cphamn1_0096"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:234801"
misc_feature complement(88819..89166)
/gene="prfA"
/locus_tag="Cphamn1_0096"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:217573"
misc_feature complement(88393..88734)
/gene="prfA"
/locus_tag="Cphamn1_0096"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene complement(89382..90743)
/locus_tag="Cphamn1_0097"
/db_xref="GeneID:6373740"
CDS complement(89382..90743)
/locus_tag="Cphamn1_0097"
/note="TIGRFAM: membrane-associated zinc metalloprotease;
PFAM: peptidase M50;
KEGG: cte:CT0124 membrane-associated zinc metalloprotease"
/codon_start=1
/transl_table=11
/product="membrane-associated zinc metalloprotease"
/protein_id="YP_001958561.1"
/db_xref="GI:189499091"
/db_xref="InterPro:IPR004387"
/db_xref="InterPro:IPR006025"
/db_xref="InterPro:IPR008915"
/db_xref="GeneID:6373740"
/translation="MDFISTTFYFILAIFVLVTAHELGHFLTAKLFGMRVDKFYIGFD
FYNLRFWKKKIGETEYGIGVFPLGGYVKIAGMVDESLDTDFQKSEPEPWEFRAKPVWQ
RLIVLAGGVTMNMILAAAIFIGMAAVFGESRTSAVNPAYVEDGSVYASMGMQTGDRFL
AVNGKPVGFWEEVLSPRNFAGNTLSYTIARDGERKNLQAPPDILTRINDNKALGIRPL
MEPVIDQVLEDEPADKAGLKSGALITAINETPVYDWTEVVTLISDNPGKTINVTWKYL
ENPSGSTVDVSKIRELGQQTISEVTPAATGKIGISLLQTLTIDHRRLNPIEATVYGLE
QTWNMTVTTVNGFGKIISGKEDFRKSLGGPIKIAKIANQSAEQGLGSFLYFMALLSIS
LAFINILPVPALDGGQFLLNAIEGIIGREIPFELKMRIQQVGMALLLTLFLFIIINDI
INP"
misc_feature complement(<90369..90722)
/locus_tag="Cphamn1_0097"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(89436..90713)
/locus_tag="Cphamn1_0097"
/note="RIP metalloprotease RseP; Region: TIGR00054"
/db_xref="CDD:232801"
misc_feature complement(order(90669..90671,90678..90683))
/locus_tag="Cphamn1_0097"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(90141..>90320)
/locus_tag="Cphamn1_0097"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:238489"
misc_feature complement(89883..90107)
/locus_tag="Cphamn1_0097"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:238489"
misc_feature complement(order(89958..89963,89970..89975,90102..90104))
/locus_tag="Cphamn1_0097"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:238489"
misc_feature complement(89436..>89600)
/locus_tag="Cphamn1_0097"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:245232"
misc_feature complement(89544..89555)
/locus_tag="Cphamn1_0097"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene complement(90804..91952)
/locus_tag="Cphamn1_0098"
/db_xref="GeneID:6373741"
CDS complement(90804..91952)
/locus_tag="Cphamn1_0098"
/EC_number="1.1.1.267"
/note="catalyzes the NADP-dependent rearrangement and
reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to
2-C-methyl-D-erythritol 4-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_001958562.1"
/db_xref="GI:189499092"
/db_xref="InterPro:IPR003821"
/db_xref="InterPro:IPR013512"
/db_xref="InterPro:IPR013644"
/db_xref="GeneID:6373741"
/translation="MKSLSILGSTGSIGLSTLDVVRQHPEKFNVTGLAEGHDINLLAE
QIKEFRPDIVSVRDKASAGLLREQLGSEKPEILWGIEGAAAVGAAEGSEMVVSAIVGA
AGLVPTVSAIKAGKDIALANKETLVVAGQLVSDLVKEHKVTLLPVDSEHSAIFQSLSG
HRKEDIERIILTASGGPFRHTSAEDLRHVGPEKALKHPQWTMGAKITIDSATLMNKGL
EVIEAHWLFDMPADKIGVVVHPQSIIHSMVEYIDGCVMAQLGAPDMRAPIAYALAWPE
RCESGIKKLDLTQIGTLTFEQPDMERFPALRLAFDALKAGQTFPAVLNAANEIAVAAF
LDKKIGFTDIPAIADRTMQAHDPYTPSGLDEYLAADRWARDTAKTMTN"
misc_feature complement(90813..91898)
/locus_tag="Cphamn1_0098"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:235472"
misc_feature complement(91563..91898)
/locus_tag="Cphamn1_0098"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:217176"
misc_feature complement(91272..91523)
/locus_tag="Cphamn1_0098"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature complement(90822..91175)
/locus_tag="Cphamn1_0098"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:222027"
gene 92129..92205
/locus_tag="Cphamn1_R0002"
/note="tRNA-Val1"
/db_xref="GeneID:6373742"
tRNA 92129..92205
/locus_tag="Cphamn1_R0002"
/product="tRNA-Val"
/db_xref="GeneID:6373742"
gene complement(92311..92685)
/locus_tag="Cphamn1_0099"
/db_xref="GeneID:6373743"
CDS complement(92311..92685)
/locus_tag="Cphamn1_0099"
/note="PFAM: acylphosphatase;
KEGG: cte:CT0126 acylphosphatase"
/codon_start=1
/transl_table=11
/product="acylphosphatase"
/protein_id="YP_001958563.1"
/db_xref="GI:189499093"
/db_xref="InterPro:IPR001792"
/db_xref="GeneID:6373743"
/translation="MRRKTEARKESGSSLGPVKSEHLFHRMHDFRNYMEKRVLATVYG
LVQGVGFRMFVKRRASQTGLKGTVRNMPNGTVEIDAQGPEGLVNELLKNVRTGPPASK
VSALDVVPQPPDHTMKGFRIMQ"
misc_feature complement(92320..92586)
/locus_tag="Cphamn1_0099"
/note="Acylphosphatase; Region: Acylphosphatase;
pfam00708"
/db_xref="CDD:216072"
gene complement(92669..94729)
/locus_tag="Cphamn1_0100"
/db_xref="GeneID:6373744"
CDS complement(92669..94729)
/locus_tag="Cphamn1_0100"
/EC_number="3.6.4.3"
/note="KEGG: pvi:Cvib_0139 ATP-dependent metalloprotease
FtsH;
TIGRFAM: ATP-dependent metalloprotease FtsH;
PFAM: peptidase M41; AAA ATPase central domain protein;
peptidase M41 FtsH extracellular; ATPase associated with
various cellular activities AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="ATP-dependent metalloprotease FtsH"
/protein_id="YP_001958564.1"
/db_xref="GI:189499094"
/db_xref="InterPro:IPR000642"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR003960"
/db_xref="InterPro:IPR005936"
/db_xref="InterPro:IPR011546"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:6373744"
/translation="MPNNLFKPQNPYKNDPENNDKKPKFSLLYYVVIVLLLIGLQLAF
FWSGSSEEIPYSEFRSYIEENKIESVKIAPERIYVNLKPGVIPSVAKNGDGSLSAEPT
EVYVTPVVDDGLIELLESKGISYQGIPGNTWIGELLQWILPFALLIGIYFFVFRRLGG
PGSQFMNISKNKAALYENLDEHTRITFKDVAGLDEAKAEVMEVVGFLKDPKKYTKLGG
KLPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDLFREA
KEKAPCIIFIDEIDAVGRSRGKGAMMGANDERENTLNQLLVEMDGFATDKGVILMAAT
NRPDVLDNALLRPGRFDRQIMVDKPDLKGRVDTFKVHTKKLSLSPDVNVKVLASQTPG
FAGAEIANAANEAALLASRRGKQSIEMKDFEDAIERVVAGLEKKNKVINPKEKKVVAY
HESGHAIISWMMAENDAVQKISIVPRGMSALGYTMNLPLEDRYLMTKHELYSRICGLL
GGRIAEEIIFDEISTGAQNDLEKITEIAYNMVVVYGMSKKLGNISYYESNNPYYGGPG
VDKKYSEHTARLIDEEVHQLIDQAQQQVREILTENHDKLEMLAQELLKNEVLHYCKIE
EILGRRPGASDDDAMSEECGKKAADRETGPDSNGKTPVDEEELKNLEAAVEKIRQSKN
AEEN"
misc_feature complement(94343..94603)
/locus_tag="Cphamn1_0100"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:219052"
misc_feature complement(92846..94336)
/locus_tag="Cphamn1_0100"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:233327"
misc_feature complement(93656..>94027)
/locus_tag="Cphamn1_0100"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(93866..93883)
/locus_tag="Cphamn1_0100"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(93683..93685)
/locus_tag="Cphamn1_0100"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(92852..93475)
/locus_tag="Cphamn1_0100"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:216502"
gene 95138..95962
/locus_tag="Cphamn1_0101"
/db_xref="GeneID:6373745"
CDS 95138..95962
/locus_tag="Cphamn1_0101"
/note="TIGRFAM: orotidine 5'-phosphate decarboxylase;
PFAM: Orotidine 5'-phosphate decarboxylase;
KEGG: cte:CT0129 orotidine-5'-phosphate decarboxylase"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_001958565.1"
/db_xref="GI:189499095"
/db_xref="InterPro:IPR001754"
/db_xref="InterPro:IPR011995"
/db_xref="GeneID:6373745"
/translation="MNAARNKVNDRISTTKSLLCVGLDSDQNRIPELYRSMERPVLEF
NRSVIKATKEHAVAYKINTAFYEARGLEGIQDMQDTLDLLPPDCLSIADAKRADIGNT
SRKYAQAFFEHWDFDALTVAPYMGFDSLEPFFAYDQKLIFVLCLTSNSGSADFEEKQL
QSGETLYESVLARVQEWDRNGNAGVVIGATKSSQLRDLRRAAPGLFFLIPGVGAQGGS
LRDSATLGVDENLQGALINVSRGIIYPDGNFDSVDVFEDSVSRKAEALHDEMLKIF"
misc_feature 95192..95869
/locus_tag="Cphamn1_0101"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:240076"
misc_feature order(95201..95203,95207..95209,95315..95317,95321..95323,
95414..95416,95420..95422,95576..95581,95765..95767,
95852..95857)
/locus_tag="Cphamn1_0101"
/note="active site"
/db_xref="CDD:240076"
misc_feature order(95321..95323,95327..95332,95417..95422,95426..95431,
95438..95443,95450..95455,95501..95509,95540..95542,
95576..95578,95633..95635,95855..95857)
/locus_tag="Cphamn1_0101"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240076"
gene 96005..97852
/locus_tag="Cphamn1_0102"
/db_xref="GeneID:6373746"
CDS 96005..97852
/locus_tag="Cphamn1_0102"
/note="Catalyzes the first step in hexosamine metabolism,
converting fructose-6P into glucosamine-6P using glutamine
as a nitrogen source"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="YP_001958566.1"
/db_xref="GI:189499096"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR005855"
/db_xref="GeneID:6373746"
/translation="MCGIVGYIGHRDAAGLLLNGLRRLEYRGYDSAGIAVLNGGLKMF
KQKGSVDELRRSLHDAGNPLNGATIGIGHTRWATHGDPSDRNAHPHVSSDGRIALIHN
GIIENYPAIKKELISKGVHFSSDTDSEVLVHLIESIWSDNPGMALEAAVRSALYHVEG
AYGLCVISEREPDSIVVARKGSPLVIGIGEGEYYIASDAAPIVEHTKKVVYLADGEMA
VVTRNDGFAIKTIENIAREKHVSELEFELAEIEKGGFEHFMLKEIFEQPKVLQDVMRG
RVRLDEGQVRLGGIEDYLDRLKLSSRVIICACGTSWHAGLIGEYLIEEFARIPVEVDY
ASEFRYRNPVITRDDVVIVISQSGETADTLAALRLAREKGALVMGICNVVGSTIARET
LCGIYTHAGPEVGVASTKAFTAQVTVLYLLALTLGKGRTMSRNELKLYLKELNGIPEK
VERILKQNDLILEIAKNYKDAGNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAE
MKHGPIALIDQDMPVIFIATRDNSYAKVLSNIEEVRSRKGKVIAIANHGDDEIGRLAD
HVIYIPPASAPVTPLLSVIPLQLLSYHIATLRGCNVDRPRNLAKSVTVE"
misc_feature 96005..97849
/locus_tag="Cphamn1_0102"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:234729"
misc_feature 96008..96664
/locus_tag="Cphamn1_0102"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:238366"
misc_feature order(96008..96010,96083..96085,96227..96232,96236..96241,
96266..96268,96308..96313,96383..96388)
/locus_tag="Cphamn1_0102"
/note="glutaminase active site [active]"
/db_xref="CDD:238366"
misc_feature 96908..97285
/locus_tag="Cphamn1_0102"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:240141"
misc_feature order(96926..96931,96959..96964,96971..96976,96995..96997,
97001..97003,97013..97015,97022..97024,97088..97090)
/locus_tag="Cphamn1_0102"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240141"
misc_feature order(96932..96937,97067..97075)
/locus_tag="Cphamn1_0102"
/note="active site"
/db_xref="CDD:240141"
misc_feature 97379..97843
/locus_tag="Cphamn1_0102"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:240142"
misc_feature order(97442..97444,97484..97486,97496..97498,97502..97504,
97508..97510,97514..97516,97526..97528,97532..97540,
97544..97555,97604..97609,97619..97621,97625..97630,
97820..97825,97838..97840)
/locus_tag="Cphamn1_0102"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240142"
misc_feature order(97478..97480,97487..97489)
/locus_tag="Cphamn1_0102"
/note="active site"
/db_xref="CDD:240142"
gene 98083..99021
/locus_tag="Cphamn1_0103"
/db_xref="GeneID:6373747"
CDS 98083..99021
/locus_tag="Cphamn1_0103"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase; Male sterility
domain; domain of unknown function DUF1731;
KEGG: cte:CT0131 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958567.1"
/db_xref="GI:189499097"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR010099"
/db_xref="InterPro:IPR013120"
/db_xref="InterPro:IPR013549"
/db_xref="GeneID:6373747"
/translation="MEDHIVITGATGVIGSELAHQLIAEGEQVVVFSRSPNSASSKVP
GAAAYAAWNYDNSDGEWTRYISGAKAVIHLAGKPLLDTRWTEEHKVECYNSRVVGTKN
LVKAIQGADIKPKSLISASAIGYYGSYENCGDSPDLDEAAAEGEDFLAKICIDWEKEA
ENVPEGVRLVLLRTGIVLSTKGGMLQQMLLPFNLFLGGPVGSGKQCISWIHVDDEVAI
IRKAVEESSYKGPINLVAPHPVSMKEFAGDLGSVLSRPSLIPVPKFALQILMGEGAEY
ASKGGKVVPGFLKEQNYRFTHPSLREALADLVEHNK"
misc_feature 98092..99006
/locus_tag="Cphamn1_0103"
/note="atypical (a) SDRs, subgroup 8; Region: SDR_a8;
cd05242"
/db_xref="CDD:187553"
misc_feature 98095..98994
/locus_tag="Cphamn1_0103"
/note="TIGR01777 family protein; Region: yfcH"
/db_xref="CDD:233570"
misc_feature order(98107..98109,98113..98124,98179..98187,98302..98310,
98365..98367,98440..98448,98527..98529,98539..98541,
98602..98613)
/locus_tag="Cphamn1_0103"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187553"
misc_feature order(98368..98370,98443..98445,98527..98529,98539..98541)
/locus_tag="Cphamn1_0103"
/note="putative active site [active]"
/db_xref="CDD:187553"
gene 99095..99589
/locus_tag="Cphamn1_0104"
/db_xref="GeneID:6373748"
CDS 99095..99589
/locus_tag="Cphamn1_0104"
/note="PFAM: Ferritin Dps family protein;
KEGG: pvi:Cvib_1194 ferritin, Dps family protein"
/codon_start=1
/transl_table=11
/product="ferritin Dps family protein"
/protein_id="YP_001958568.1"
/db_xref="GI:189499098"
/db_xref="InterPro:IPR008331"
/db_xref="InterPro:IPR009040"
/db_xref="InterPro:IPR014035"
/db_xref="GeneID:6373748"
/translation="MGTRGREIVGEHIDRVLELLNKAFADEWLAYYQYWIGAKIVEGP
MKDAVIAELLQHAADELRHADLVSGRIIQLGGVPLTSPKKWFDWTNCGYDEPENPFVE
KILEQNISGEQCAISTYNSIIEEIGMKDPVTYNIAVQILEDEVEHEEDLQSLLEDLGV
IINK"
misc_feature 99122..99559
/locus_tag="Cphamn1_0104"
/note="DPS-like protein, ferritin-like diiron-binding
domain; Region: DPSL; cd01052"
/db_xref="CDD:153111"
misc_feature 99143..99568
/locus_tag="Cphamn1_0104"
/note="Ferritin-like domain; Region: Ferritin; pfam00210"
/db_xref="CDD:215791"
misc_feature order(99173..99175,99272..99274,99281..99283,99428..99430,
99524..99526,99533..99535)
/locus_tag="Cphamn1_0104"
/note="diiron binding motif [ion binding]; other site"
/db_xref="CDD:153111"
gene 99653..99838
/locus_tag="Cphamn1_0105"
/db_xref="GeneID:6373749"
CDS 99653..99838
/locus_tag="Cphamn1_0105"
/note="KEGG: vco:VC0395_0417 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958569.1"
/db_xref="GI:189499099"
/db_xref="GeneID:6373749"
/translation="MLIWGIDLQAALVILSSMFAVVGVGLFAGWSILSNITASFVIFF
SAPCKIGDTIRIVDGVW"
sig_peptide 99653..99739
/locus_tag="Cphamn1_0105"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.773) with cleavage site probability 0.734 at
residue 29"
misc_feature 99662..>99820
/locus_tag="Cphamn1_0105"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene complement(99949..100221)
/locus_tag="Cphamn1_0106"
/db_xref="GeneID:6373750"
CDS complement(99949..100221)
/locus_tag="Cphamn1_0106"
/note="PFAM: RNP-1 like RNA-binding protein;
KEGG: cte:CT0132 RNA-binding protein"
/codon_start=1
/transl_table=11
/product="RNP-1 like RNA-binding protein"
/protein_id="YP_001958570.1"
/db_xref="GI:189499100"
/db_xref="InterPro:IPR000504"
/db_xref="GeneID:6373750"
/translation="MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGF
GFVEMPNDDEAQNAIDSLHDSDLNGRSIKVNQARPREERPPRRDNY"
misc_feature complement(99991..100218)
/locus_tag="Cphamn1_0106"
/note="RNA recognition motif in Helicobacter pylori HP0827
protein and similar proteins; Region: RRM_HP0827_like;
cd12399"
/db_xref="CDD:240845"
gene 100610..101944
/locus_tag="Cphamn1_0107"
/db_xref="GeneID:6373751"
CDS 100610..101944
/locus_tag="Cphamn1_0107"
/note="TIGRFAM: ammonium transporter;
PFAM: Rh family protein/ammonium transporter;
KEGG: plt:Plut_0089 ammonium transporter"
/codon_start=1
/transl_table=11
/product="ammonium transporter"
/protein_id="YP_001958571.1"
/db_xref="GI:189499101"
/db_xref="InterPro:IPR001905"
/db_xref="InterPro:IPR010256"
/db_xref="GeneID:6373751"
/translation="MVMGKKLISTGLLLLLFMIVADTVWASDGVTDSGTTAWMLTATT
LVLLMVPGLAMFYGGLVRTKNVLGTMMHSFAAMVVIGVLWPFLGYALSFGPSVLGGLV
GWNPDYVLLRGIDDSILDSGIPEYVFAMFQGKFAIIAPALIAGAFAERVSFRGYVVFI
ALWSLVVYSPICHWVWAEDGFLFNMGPAGAIDFAGGTVVHISSGISALVAALFLGSRR
GYPKNVMHPNNLVMTMIGAGLLWVGWFGFNAGSAVASDLDTGRALTVTQIAAAAGAGA
WMIIESLLYKKITTLGVVSGILAGLVAITPAAGVVQPGGAMVIGILASVFCFLAIQVK
NRAGYDDSLDAFGIHGIGGIVGALALTFFIREAWMADAAVAAGGSWTVWQQFGVQAAA
VVITIVYAAIVTIILLVIIEKTIGFRLKETDEMTGLDQSLHGEHGYGLINLN"
sig_peptide 100610..100690
/locus_tag="Cphamn1_0107"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.996) with cleavage site probability 0.766 at
residue 27"
misc_feature 100760..101923
/locus_tag="Cphamn1_0107"
/note="Ammonia permease [Inorganic ion transport and
metabolism]; Region: AmtB; COG0004"
/db_xref="CDD:223083"
gene 101956..102297
/locus_tag="Cphamn1_0108"
/db_xref="GeneID:6373752"
CDS 101956..102297
/locus_tag="Cphamn1_0108"
/note="PFAM: nitrogen regulatory protein P-II;
KEGG: cte:CT0134 P-II family protein"
/codon_start=1
/transl_table=11
/product="nitrogen regulatory protein P-II"
/protein_id="YP_001958572.1"
/db_xref="GI:189499102"
/db_xref="InterPro:IPR002187"
/db_xref="GeneID:6373752"
/translation="MKLITAIIQEDKLDTVREALIQSDISRISVSRISGHGRQEDIDI
YRGRKIVPNLIPKIRIEIALNDAFVEPAIQTIVESARHGSGEVGDGKIFVTPLEECIR
IRTDERGGTAI"
misc_feature 101965..102270
/locus_tag="Cphamn1_0108"
/note="Nitrogen regulatory protein P-II; Region: P-II;
pfam00543"
/db_xref="CDD:201295"
misc_feature 101965..102270
/locus_tag="Cphamn1_0108"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene 102503..103429
/locus_tag="Cphamn1_0109"
/db_xref="GeneID:6373753"
CDS 102503..103429
/locus_tag="Cphamn1_0109"
/note="PFAM: peptidase C1A papain;
KEGG: pvi:Cvib_0165 peptidase C1A, papain"
/codon_start=1
/transl_table=11
/product="peptidase C1A papain"
/protein_id="YP_001958573.1"
/db_xref="GI:189499103"
/db_xref="InterPro:IPR000668"
/db_xref="GeneID:6373753"
/translation="MIPKHVCLQLCGSTQSFGTGWLSPMPDLRDYTVDTPEIVDMTKK
LKLRQSEKALKSAVPYSVDLRGWCSEVENQGKIGSCTAHAAMGVVEYLQRRAFDEHID
GSRLFVYKATRNLMHATGDTGAWLRNTMGALVLCGVPHEQYWEYTDVDPDYDKEPTGF
VYAVADNFEALRYFCHDPQSGNMDKRAVLESVKRFLAAGIPSMFGFFGFPSFNSSDDK
GCIPFPCGNEKAEWGHAIVAVGFDDKKEIINTSCKKSKTKGALLIRNSWGTDWGDNGY
GWLPYEYILQGLAVDFWSLLSMDMVDTKQFGL"
misc_feature 102683..103381
/locus_tag="Cphamn1_0109"
/note="C1 Peptidase family (MEROPS database nomenclature),
also referred to as the papain family; composed of two
subfamilies of cysteine peptidases (CPs), C1A (papain) and
C1B (bleomycin hydrolase). Papain-like enzymes are mostly
endopeptidases with some...; Region: Peptidase_C1;
cd02619"
/db_xref="CDD:239110"
misc_feature order(102722..102724,102740..102742,103202..103204,
103295..103297)
/locus_tag="Cphamn1_0109"
/note="active site"
/db_xref="CDD:239110"
gene complement(103590..104132)
/locus_tag="Cphamn1_0110"
/db_xref="GeneID:6373754"
CDS complement(103590..104132)
/locus_tag="Cphamn1_0110"
/note="PFAM: TPR repeat-containing protein;
Tetratricopeptide TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein;
KEGG: plt:Plut_0092 TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958574.1"
/db_xref="GI:189499104"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="GeneID:6373754"
/translation="MHNIFLTLLTTLLFLVFTWSPVHAETPKQSYEKGYERHMKSRHL
DAAKYYTKAINGNPSYVQAYQMRAAAYHSLKDYERALQDYTRVIELGEKYFRPVAYFN
RGVVNYDSGRYKAAITDYRWAVSYDNKMALAYLHRGIAKGRIGDKRGQVRDFLYAARY
GDFEVKQWLEQHAPHVLERQ"
sig_peptide complement(104058..104132)
/locus_tag="Cphamn1_0110"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 25"
misc_feature complement(103752..104042)
/locus_tag="Cphamn1_0110"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature complement(order(103803..103808,103815..103820,
103827..103832,103914..103919,103926..103931,
103935..103940,104025..104030,104037..104042))
/locus_tag="Cphamn1_0110"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature complement(103863..104042)
/locus_tag="Cphamn1_0110"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
misc_feature complement(order(103764..103766,103773..103775,
103785..103787,103821..103823,103872..103874,
103881..103883,103893..103895,103929..103931,
103974..103976,103983..103985,103995..103997,
104031..104033))
/locus_tag="Cphamn1_0110"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature complement(103752..103949)
/locus_tag="Cphamn1_0110"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:222112"
gene 104238..104975
/locus_tag="Cphamn1_0111"
/db_xref="GeneID:6373755"
CDS 104238..104975
/locus_tag="Cphamn1_0111"
/note="PFAM: chromosome segregation and condensation
protein ScpA;
KEGG: cte:CT0136 segregation and condensation protein A"
/codon_start=1
/transl_table=11
/product="chromosome segregation and condensation protein
ScpA"
/protein_id="YP_001958575.1"
/db_xref="GI:189499105"
/db_xref="InterPro:IPR003768"
/db_xref="GeneID:6373755"
/translation="MFRISLDEFEGPLDLLLFFIKRDELDIYNIPISRITKDFIGYLE
AMQSLNLEVAAEFIYMASLLMSIKARMLLPNETSEEGDASEFDPRTELVERLMEYKRI
KEGAEKMRSLEETRSAMFARGYYESFEPEVIDELDEPVNRSTLYHLIMTYKSVMENMP
KVHVQNVDEAPVTVDEQSALILSKLRETIQISFRTILKEVGEPLVLVVTFLAVLELCR
RQKIVVIVKDGYDDFWMSSRQHPSSGA"
misc_feature 104247..104912
/locus_tag="Cphamn1_0111"
/note="ScpA/B protein; Region: ScpA_ScpB; cl00598"
/db_xref="CDD:241970"
gene 105006..105782
/locus_tag="Cphamn1_0112"
/db_xref="GeneID:6373756"
CDS 105006..105782
/locus_tag="Cphamn1_0112"
/note="PFAM: Methionine biosynthesis MetW protein;
Methyltransferase type 11; Methyltransferase type 12;
KEGG: mtp:Mthe_1530 methyltransferase type 11"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_001958576.1"
/db_xref="GI:189499106"
/db_xref="InterPro:IPR010743"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6373756"
/translation="MAHEFDGKKYEQASSHQKEWGMGLIAELDLKGNERVLDLGCGDG
ALAAWIAEMLPDGNVVGIDASQGMIDVALQKTKDNLCFVLMDIDDLDFIEEFDVVFSN
ATLHWVKDHRKLLHNVSRALRSCGRVRFNFAGDGNCQSFFNVIQEATAHERFEESFAG
FEWPWYMPSVDEYAVLAEHSGLKNIRVWGGNADRYFPDRETMVKWIDQPSLVPLLPFL
PEQERALFRDYVVKRMIEETLQEDGTCFETFRRINLEAEK"
misc_feature 105075..105779
/locus_tag="Cphamn1_0112"
/note="Trans-aconitate methyltransferase [General function
prediction only]; Region: Tam; COG4106"
/db_xref="CDD:226591"
misc_feature 105108..105389
/locus_tag="Cphamn1_0112"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(105120..105140,105192..105197,105252..105260,
105309..105311)
/locus_tag="Cphamn1_0112"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 105896..106162
/locus_tag="Cphamn1_0113"
/pseudo
/db_xref="GeneID:6373757"
gene 106362..107282
/locus_tag="Cphamn1_0114"
/db_xref="GeneID:6373758"
CDS 106362..107282
/locus_tag="Cphamn1_0114"
/note="KEGG: mgi:Mflv_4523 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958577.1"
/db_xref="GI:189499107"
/db_xref="GeneID:6373758"
/translation="MRFFESLRIDFSAKVKWRMLCDRNPLFVTMQDKYSVRAFARSRG
VKTAELLFVTDRPETIPFDELPPRYLIKANHGCRWNILCYDSRFYQFKDGRDLVNQDG
SFLNTHSAARYEISKAEVIGLCREWLSRDYSRNEWAYRQIRPKIVIEELLESKDEKSL
KDYRLYTFHGVVKAINVGSPVFRNNGENVFFDADWNEIVLTKYSEARPDPLPEMPAGF
GEMIQAAQNLCESIDFARVDLYDTSKGVILGEITIYPGGGRKLTPCPRFNTWLGDQWR
IGTSDSIAAFILMVAFTLRSYAKRLIQVRT"
misc_feature 106398..107189
/locus_tag="Cphamn1_0114"
/note="TupA-like ATPgrasp; Region: ATPgrasp_TupA;
pfam14305"
/db_xref="CDD:206473"
gene 107282..108520
/locus_tag="Cphamn1_0115"
/db_xref="GeneID:6373759"
CDS 107282..108520
/locus_tag="Cphamn1_0115"
/note="KEGG: bcl:ABC1230 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958578.1"
/db_xref="GI:189499108"
/db_xref="GeneID:6373759"
/translation="MRSNRKRITIKAISRRLPRSFRSLYTSLRFCLKWFRTLRVEFRV
LEGQEPGSRSPLSILCAAGEKDRNYLAGLAFGEDYRERFLCRAWLWNANRVSGKNDGR
YAMMFVKIHKSQRWILGSGNRFSIPDWVIGEVALPVDSGSMTAEKVKSDTRRIRTNGL
EYEVTRDIKRFDDFYHNMYLPHILRVHGRSAFVTPYELMRKRLEHCDLLLVMKQGEPI
SGCMISYFEAVPRMKSLGVRDGDPEYLKFGATGALYYFSLLYLEGKGFPWIGLGGSRA
FLHDGVLRYKRKWAQKLVDSSPDIFEFRILADSNATRSFLRSNPFIFKKRGSLYAAVF
VDRERPLDPKELGRIGKEYLYPGLSKLYVYVFQQNLPEYPNTVSEELSDRLVIQSAEK
VMGGHYNSKMVTDLNILLNA"
gene 108630..108984
/locus_tag="Cphamn1_0116"
/pseudo
/db_xref="GeneID:6373760"
gene 109124..110071
/locus_tag="Cphamn1_0117"
/db_xref="GeneID:6373761"
CDS 109124..110071
/locus_tag="Cphamn1_0117"
/note="PFAM: DNA methylase N-4/N-6 domain protein;
KEGG: mbn:Mboo_2337 DNA methylase N-4/N-6 domain protein"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_001958579.1"
/db_xref="GI:189499109"
/db_xref="InterPro:IPR001091"
/db_xref="InterPro:IPR002295"
/db_xref="InterPro:IPR002941"
/db_xref="GeneID:6373761"
/translation="MPLSVSTLENPQTDIPRIAKDRQLISKIEAGVQQIETNHRLVTG
DARKLGFIEDESVHLVVTSPPYWTLKKYRDYENQLGDVADYEEFLTELDKVWEHCYRV
LVPGGRLICVVGDVCLSRRKNDGRHTVVPLHASIQEHCRKMGFDNLSPIIWHKIANAS
YEANGNGGGFLGKPYEPNAVIKNDIEYILMERKPGGYRKPSVATRVLSVISDENHRQW
FQSIWTGLTGASTRTHPAPYPEGLVERLIRMFSFVGDTVLDPFMGTGTTTVAAAKWGR
NSIGVEIDPHYYAMAEKRIRQATASLFSTAEIVTQAKSV"
misc_feature 109226..110026
/locus_tag="Cphamn1_0117"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:223931"
misc_feature <109241..109462
/locus_tag="Cphamn1_0117"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature <109817..110008
/locus_tag="Cphamn1_0117"
/note="DNA methylase; Region: N6_N4_Mtase; cl17433"
/db_xref="CDD:247987"
gene 110074..110799
/locus_tag="Cphamn1_0118"
/db_xref="GeneID:6373762"
CDS 110074..110799
/locus_tag="Cphamn1_0118"
/EC_number="3.1.21.4"
/note="PFAM: restriction endonuclease XhoI;
KEGG: dvu:DVUA0020 type II restriction endonuclease"
/codon_start=1
/transl_table=11
/product="type II site-specific deoxyribonuclease"
/protein_id="YP_001958580.1"
/db_xref="GI:189499110"
/db_xref="InterPro:IPR007636"
/db_xref="REBASE:CphBORF117P"
/db_xref="GeneID:6373762"
/translation="MDLNTRVAKAVRHFWKVRTRQHKKQGSSTGKKDAGNRSAVTGGK
HLDGFIKLLTELLAEAGLPDSAIHVKSTTLPGYFRPTKNWDLLVVVDRILLASIELKA
HIGPSFGNNFNNRVEEALGNSTDLLTAYREGKFKPSQKPWLGWLMLLEDAPKSTTPVR
VDEPHFEVFPEFKEASYAKRYGLFCERLMRERLYDGACLIMSDKAGGLKGKFTEPNSE
FSFTMFATSLTAHALAYARLRKL"
misc_feature 110158..110724
/locus_tag="Cphamn1_0118"
/note="Restriction endonuclease XhoI; Region: XhoI;
pfam04555"
/db_xref="CDD:146947"
gene 110847..112156
/locus_tag="Cphamn1_0119"
/pseudo
/db_xref="GeneID:6373763"
gene 112153..112728
/locus_tag="Cphamn1_0120"
/db_xref="GeneID:6373764"
CDS 112153..112728
/locus_tag="Cphamn1_0120"
/note="KEGG: swo:Swol_0159 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958581.1"
/db_xref="GI:189499111"
/db_xref="GeneID:6373764"
/translation="MKITFDIPWTRYALIAELAKRLDGVNPQFGKTVLEKLVFFLQEI
YGIKCGYDFELYSYGPFDSQLLGDLDLVEHWGGVTVLRVNNSFGGYRIQPSEKVDSIV
GKAKEFIEDQKTEKALDDLVSNYGAMTARDLELRATTVYVERGLRKKGEYRSKEKICS
LVSQIKPKFDFQEIEQAVLELKKRSHIEFTD"
misc_feature 112252..112554
/locus_tag="Cphamn1_0120"
/note="Protein of unknown function (DUF4065); Region:
DUF4065; cl01445"
/db_xref="CDD:242508"
gene 112854..114128
/locus_tag="Cphamn1_0121"
/db_xref="GeneID:6373765"
CDS 112854..114128
/locus_tag="Cphamn1_0121"
/note="PFAM: conserved hypothetical protein;
KEGG: plt:Plut_0094 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958582.1"
/db_xref="GI:189499112"
/db_xref="InterPro:IPR008323"
/db_xref="GeneID:6373765"
/translation="MPEIRPFKGLRYDPETAGDMGSIICPPYDIIPPSMQQELYDSSA
YNAVRLELPKEDDPYGAAAERLAQWMREGALMQDDEPALYPYFQTYTDPEGNTYTRKG
FFCALRLHEFSEKKVLPHERTLSGPKKDRLNLFKRTQTNISSIFGLYADDQMQADKLI
EEYAVSHEPVVDAAFQGVRNRLWKITDPDITGKVQQVLLERQVYIADGHHRYETGVNY
RNLRAEENPSHTGEEPYNFILVYLANIFDRGLIIFPLHRMVHSLDTFNADALFDALGA
NFSITPLSGRDELKRYLDGETSNHAYGVVTSTGVWGIRLKTPPETLLGDAVPAPLLQL
SVVVLHELILQRVLGITPEAMRSQTNLVYIEDDREVFENVSNGKMQVGFVVKPTTVEQ
VRDISQAGEVMPQKSTYFYPKIMTGLVMHRLK"
misc_feature 112860..114125
/locus_tag="Cphamn1_0121"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG4198"
/db_xref="CDD:226661"
misc_feature 112860..114122
/locus_tag="Cphamn1_0121"
/note="Protein of unknown function (DUF1015); Region:
DUF1015; pfam06245"
/db_xref="CDD:218953"
gene 114364..114840
/locus_tag="Cphamn1_0122"
/db_xref="GeneID:6373766"
CDS 114364..114840
/locus_tag="Cphamn1_0122"
/note="PFAM: protein of unknown function UPF0079;
KEGG: cte:CT0138 nucleotide-binding protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958583.1"
/db_xref="GI:189499113"
/db_xref="InterPro:IPR003442"
/db_xref="GeneID:6373766"
/translation="MFVFFDFLLLNFDFLPMKEFYSRSVEETREYARQFAAGLQPGDV
VFLCGNLGAGKTEFMRGIAQVFKCDDQLSSPSFSIFNIYNGSLRGEPVKLQHFDLYRI
ETPEELDVLGFGEYIDGQTISVVEWGEKFPDELPGNAKKVFIEAVGEDERRIVLER"
misc_feature 114415..114837
/locus_tag="Cphamn1_0122"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:223873"
gene 115029..115655
/locus_tag="Cphamn1_0123"
/db_xref="GeneID:6373767"
CDS 115029..115655
/locus_tag="Cphamn1_0123"
/note="PFAM: peptidase M22 glycoprotease;
KEGG: plt:Plut_0096 protease"
/codon_start=1
/transl_table=11
/product="peptidase M22 glycoprotease"
/protein_id="YP_001958584.1"
/db_xref="GI:189499114"
/db_xref="InterPro:IPR000905"
/db_xref="GeneID:6373767"
/translation="MAAVGHVGVVEETVHQWQRTAESIIPLADRVLAAAEMVMSDIDF
LALSRGPGSFTALRIGMATAKGMAYGLGRPLVTVSTMEAFAASACEKVGSRFLVPVIP
ARKGEWYYAVYRANGKGPEEVEKTAFVHVDTLREILERYRGRCAVVAKDIGQLEEVCR
SAGVDAVKADFFTAVSLIPIAEKTYMAGEVPSLEMVTPDYLQQFRSNR"
misc_feature 115077..115634
/locus_tag="Cphamn1_0123"
/note="tRNA threonylcarbamoyl adenosine modification
protein YeaZ; Region: T6A_YeaZ; TIGR03725"
/db_xref="CDD:234332"
misc_feature 115089..>115382
/locus_tag="Cphamn1_0123"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:216132"
gene 115935..116366
/locus_tag="Cphamn1_0124"
/db_xref="GeneID:6373768"
CDS 115935..116366
/locus_tag="Cphamn1_0124"
/note="TIGRFAM: iojap-like protein;
PFAM: Iojap-related protein;
KEGG: pvi:Cvib_0171 iojap-like protein"
/codon_start=1
/transl_table=11
/product="iojap family protein"
/protein_id="YP_001958585.1"
/db_xref="GI:189499115"
/db_xref="InterPro:IPR004394"
/db_xref="GeneID:6373768"
/translation="MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVIL
DVRDVSAVTDFFVIATADSERKAKAAYEHIVDELKHEDERPLHIEGGDTLHWVLIDYF
DVVVHIFMPEERAFYDLESLWGDAPKQTLKVEGDRVVADGG"
misc_feature 116007..116303
/locus_tag="Cphamn1_0124"
/note="iojap-like ribosome-associated protein; Region:
iojap_ybeB; TIGR00090"
/db_xref="CDD:161702"
gene 116456..118942
/locus_tag="Cphamn1_0125"
/db_xref="GeneID:6373769"
CDS 116456..118942
/locus_tag="Cphamn1_0125"
/EC_number="5.99.1.3"
/note="KEGG: cch:Cag_0088 DNA gyrase, subunit A;
TIGRFAM: DNA gyrase, A subunit;
PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase
repeat beta-propeller"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_001958586.1"
/db_xref="GI:189499116"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005743"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:6373769"
/translation="MQRDKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHR
RVLFGMHELGLQAGKGYKKSARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLID
GQGNFGSVDGDSPAAMRYTEVRMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSA
MPNMLVNGASGIAVGMATNIPPQNLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTA
GIIYGYEGVKQAYHTGRGKVVIRARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIV
ELIHLKKIEGIADIRDESDRDGMRLVIELKRDAVAKVVLNHLYKHTPMQDTFGVILLA
LVDGVPKVLNLKEMMEAYLKHRNEIVLRRTTYELAAAEKKAHILEGLKICLDNLDEVI
STIRESPNAGVAQEKLMEKFGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIE
ELRFILANPEKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITIT
HETFIKRFPVSGYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWL
KVYEIPEAGRAARGRSLANIMELQPGEKIKAYINVKTFDDPLFIIMATAKGSIKKTEI
EAFSRPRRNGIAAITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPMGRTA
MGVKGISLDEGETCISMVTSKRPDTSLLAVTDNGFGKRSKVEDYRLTRRGAKGVITLK
AHEKVGHLVGLLDVNDSDDLIIITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTI
SATARVPKSVDEEENEALSGPEDQIELFDS"
misc_feature 116459..118876
/locus_tag="Cphamn1_0125"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:235502"
misc_feature 116537..117874
/locus_tag="Cphamn1_0125"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes...;
Region: TOP4c; cd00187"
/db_xref="CDD:238111"
misc_feature order(116537..116620,116633..116782,116786..116842,
116846..116917,116924..116926)
/locus_tag="Cphamn1_0125"
/note="CAP-like domain; other site"
/db_xref="CDD:238111"
misc_feature 116813..116815
/locus_tag="Cphamn1_0125"
/note="active site"
/db_xref="CDD:238111"
misc_feature order(117611..117619,117626..117637,117668..117673,
117713..117763)
/locus_tag="Cphamn1_0125"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:238111"
misc_feature 117959..118102
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 118109..118261
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 118280..118414
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 118421..118564
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 118577..118720
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
misc_feature 118727..118870
/locus_tag="Cphamn1_0125"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:217832"
gene 118969..119202
/locus_tag="Cphamn1_0126"
/db_xref="GeneID:6373770"
CDS 118969..119202
/locus_tag="Cphamn1_0126"
/note="SMART: zinc finger CDGSH-type domain protein;
KEGG: plt:Plut_0099 Zn-finger, CDGSH type"
/codon_start=1
/transl_table=11
/product="zinc finger CDGSH-type domain-containing
protein"
/protein_id="YP_001958587.1"
/db_xref="GI:189499117"
/db_xref="InterPro:IPR006622"
/db_xref="GeneID:6373770"
/translation="MEKRNKPYIQHEEPGLKKYCACSLSRNLPYCDGSHHGTGMHSYK
VEIETAKTVAICGCGSSKNKPFCDGSHELLQET"
misc_feature 118978..119073
/locus_tag="Cphamn1_0126"
/note="Iron-binding zinc finger CDGSH type; Region:
zf-CDGSH; pfam09360"
/db_xref="CDD:220203"
misc_feature 119080..119184
/locus_tag="Cphamn1_0126"
/note="Iron-binding zinc finger CDGSH type; Region:
zf-CDGSH; pfam09360"
/db_xref="CDD:220203"
gene 119235..120932
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/db_xref="GeneID:6373771"
CDS 119235..120932
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/EC_number="6.3.4.2"
/note="CTP synthase; cytidine triphosphate synthetase;
catalyzes the ATP-dependent amination of UTP to CTP with
either L-glutamine or ammonia as the source of nitrogen;
in Escherichia coli this enzyme forms a homotetramer"
/codon_start=1
/transl_table=11
/product="CTP synthetase"
/protein_id="YP_001958588.1"
/db_xref="GI:189499118"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR004468"
/db_xref="InterPro:IPR012998"
/db_xref="InterPro:IPR017456"
/db_xref="GeneID:6373771"
/translation="MARPKNVKHIFVTGGVVSSLGKGILSASLGLLLKSRGLRVAIQK
YDPYINVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFLDEPTSQASNLTMGRVYKA
VIDKERQGEYLGGTVQVVPHVIDEIKAKMNELAKNANLDVLITEIGGTIGDIESLPFL
EAMRQLKLDLGTKNLLNIHLTLVPYIKAACEMKTKPTQHSVKMLLETGIQPDILVCRS
EKPLSREIKNKVGHFCNLHEADVIGLSDCETIYGVPIMLLDEQLDKRVLKKLGIKKFQ
DPELSYWTEFCDKVKHPEDGEVTIAVCGKYTEYPDAYKSILESFVHAGAVNNVKVTVR
FIRSEDAEESGCDIATAMKDVHGLLVAPGFGDRGIEGKISFIRYARENNIPFLGICLG
MQCATIEFARNVCGLSEANSTEFSKRCRQPVIDLMEHQKKVKEKGGTMRLGSYPCILK
EDTIANKAYGKFLINERHRHRYEFNNEYRELLEQNGMLFSGTSPNGDLVEIIEISGHP
WFVGVQFHPEYKSRVRSAHPLFVGFVAAAKAFAFGDRQLSFEPDTLPLGEPERTLEG"
misc_feature 119250..120821
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:235437"
misc_feature 119256..120020
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:239387"
misc_feature order(119286..119288,119295..119306,119364..119366,
119370..119378,119454..119456,119460..119462,
119469..119474,119670..119672,119676..119678)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="Catalytic site [active]"
/db_xref="CDD:239387"
misc_feature order(119289..119303,119364..119366,119679..119681,
119811..119819,119919..119921)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="active site"
/db_xref="CDD:239387"
misc_feature order(119364..119378,119676..119681,119697..119699,
119811..119819,119919..119921)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:239387"
misc_feature 120126..120821
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature order(120315..120329,120402..120407,120414..120416,
120474..120476,120639..120650,120780..120782,
120786..120788)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="active site"
/db_xref="CDD:153217"
misc_feature order(120321..120323,120405..120407)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature order(120402..120404,120780..120782,120786..120788)
/gene="pyrG"
/locus_tag="Cphamn1_0127"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 121460..122954
/locus_tag="Cphamn1_R0003"
/db_xref="GeneID:6373772"
rRNA 121460..122954
/locus_tag="Cphamn1_R0003"
/product="16S ribosomal RNA"
/db_xref="GeneID:6373772"
gene 123121..123197
/locus_tag="Cphamn1_R0004"
/note="tRNA-Ile1"
/db_xref="GeneID:6373773"
tRNA 123121..123197
/locus_tag="Cphamn1_R0004"
/product="tRNA-Ile"
/db_xref="GeneID:6373773"
gene 123233..123305
/locus_tag="Cphamn1_R0005"
/note="tRNA-Ala1"
/db_xref="GeneID:6373774"
tRNA 123233..123305
/locus_tag="Cphamn1_R0005"
/product="tRNA-Ala"
/db_xref="GeneID:6373774"
gene 123458..126375
/locus_tag="Cphamn1_R0006"
/db_xref="GeneID:6373775"
rRNA 123458..126375
/locus_tag="Cphamn1_R0006"
/product="23S ribosomal RNA"
/db_xref="GeneID:6373775"
gene 126479..126587
/locus_tag="Cphamn1_R0007"
/db_xref="GeneID:6373776"
rRNA 126479..126587
/locus_tag="Cphamn1_R0007"
/product="5S ribosomal RNA"
/db_xref="GeneID:6373776"
gene 126804..127823
/locus_tag="Cphamn1_0128"
/db_xref="GeneID:6373777"
CDS 126804..127823
/locus_tag="Cphamn1_0128"
/note="PFAM: ferrochelatase;
KEGG: pvi:Cvib_1664 ferrochelatase"
/codon_start=1
/transl_table=11
/product="ferrochelatase"
/protein_id="YP_001958589.1"
/db_xref="GI:189499119"
/db_xref="InterPro:IPR001015"
/db_xref="GeneID:6373777"
/translation="MLSITQSHPLSAFRQSIMHKRIAVILAAHGEAETAGFFDNFSMT
RHTLAHAGEVMNLPVPLQLMISVAGGLKNMVKFKKKNYRSPQNRITRKQAALLAEKLA
GQAEAIRYDVHASFFVTPPFVEQIVEQVRDCDMLLLIPMAPIDNRLMSGSLEILAERY
LPPRVPSRPQVISGFWNDPGLLNVYLDHLFMHAAPVPGSALVLAFHGTLEKDQRGNEP
EFQTGSKEIATMASALRKAVCNDPRNGYERVEVAYLNHDVGGTWSSPSLQDMLKSLHR
ESIASIELFSCGYFSDGTETMLNAREHVVESGIRKAAIIPCLNDSEPFADYLAAKVRD
AVTGA"
misc_feature 126864..127811
/locus_tag="Cphamn1_0128"
/note="Ferrochelatase; Region: Ferrochelatase; pfam00762"
/db_xref="CDD:216106"
misc_feature 126867..127337
/locus_tag="Cphamn1_0128"
/note="Ferrochelatase, N-terminal domain: Ferrochelatase
(protoheme ferrolyase or HemH) is the terminal enzyme of
the heme biosynthetic pathway. It catalyzes the insertion
of ferrous iron into the protoporphyrin IX ring yielding
protoheme. This enzyme is...; Region: Ferrochelatase_N;
cd03411"
/db_xref="CDD:239504"
misc_feature order(126885..126887,127029..127031,127041..127043,
127068..127070,127080..127082,127224..127226,
127233..127244,127323..127325,127329..127331)
/locus_tag="Cphamn1_0128"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:239504"
misc_feature order(126888..126890,126924..126926,126936..126944,
127245..127250)
/locus_tag="Cphamn1_0128"
/note="active site"
/db_xref="CDD:239504"
misc_feature 127350..127760
/locus_tag="Cphamn1_0128"
/note="Ferrochelatase, C-terminal domain: Ferrochelatase
(protoheme ferrolyase or HemH) is the terminal enzyme of
the heme biosynthetic pathway. It catalyzes the insertion
of ferrous iron into the protoporphyrin IX ring yielding
protoheme. This enzyme is...; Region: Ferrochelatase_C;
cd00419"
/db_xref="CDD:238240"
misc_feature order(127419..127421,127434..127436,127587..127589,
127686..127688)
/locus_tag="Cphamn1_0128"
/note="active site"
/db_xref="CDD:238240"
misc_feature order(127464..127472,127479..127481,127491..127493,
127665..127667,127671..127679,127683..127685,
127695..127697,127758..127760)
/locus_tag="Cphamn1_0128"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:238240"
gene 127976..128683
/locus_tag="Cphamn1_0129"
/db_xref="GeneID:6373778"
CDS 127976..128683
/locus_tag="Cphamn1_0129"
/note="PFAM: PHP domain protein;
SMART: phosphoesterase PHP domain protein;
KEGG: pvi:Cvib_1006 PHP C-terminal domain protein"
/codon_start=1
/transl_table=11
/product="PHP domain-containing protein"
/protein_id="YP_001958590.1"
/db_xref="GI:189499120"
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="GeneID:6373778"
/translation="MQQWLYCDFHIHTTWSDGKYSLDDVVGLYGEAGFDVIAITDHVL
DSESIRRSAKPVSELLVMDGDDFGAYQESLWKAARNAWESYGMLLIPGVELTNNTDRY
HILALDIKEYISPDLSVEEIVACVRRQQGISVACHPYIRNHSGDDPSFYLWENHERLA
TQFDAWEVANRDDLFNVVGLKKFNYIASSDFHEERHLHSWKTLLQCEKNVESVKDAIR
KNDRVSLFLYRGGKIKE"
misc_feature 127985..128665
/locus_tag="Cphamn1_0129"
/note="Polymerase and Histidinol Phosphatase domain;
Region: PHP; cl17102"
/db_xref="CDD:214263"
misc_feature 127994..128521
/locus_tag="Cphamn1_0129"
/note="PHP domain; Region: PHP; pfam02811"
/db_xref="CDD:217238"
misc_feature order(128003..128005,128009..128011,128099..128101,
128255..128257,128543..128545,128549..128551)
/locus_tag="Cphamn1_0129"
/note="active site"
/db_xref="CDD:213985"
gene 128719..128859
/locus_tag="Cphamn1_0130"
/pseudo
/db_xref="GeneID:6373779"
gene complement(128959..129735)
/locus_tag="Cphamn1_0131"
/db_xref="GeneID:6373780"
CDS complement(128959..129735)
/locus_tag="Cphamn1_0131"
/note="PFAM: DNA topoisomerase type IA zn finger domain
protein;
KEGG: gur:Gura_2103 DNA topoisomerase, type IA, zn finger
domain protein"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase type IA zn finger
domain-containing protein"
/protein_id="YP_001958591.1"
/db_xref="GI:189499121"
/db_xref="InterPro:IPR013498"
/db_xref="GeneID:6373780"
/translation="MSETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRT
VDQMVQASRSGRQNIAEGSSAAATSSQTELRLINVARASLEELLLDYEDFLRHRRLTQ
WTPDCPEARAVRDVPKRFRQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANT
LICLINQANYLLDRQIATLEIAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHI
PPCPQCGKPMVLRTAQAGKNAGRQFWGCTAYPDCRGVVNV"
misc_feature complement(129130..129276)
/locus_tag="Cphamn1_0131"
/note="four helix bundle suffix domain; Region:
4helix_suffix; TIGR04258"
/db_xref="CDD:211981"
misc_feature complement(<128977..129075)
/locus_tag="Cphamn1_0131"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene complement(129953..130171)
/locus_tag="Cphamn1_0132"
/db_xref="GeneID:6373781"
CDS complement(129953..130171)
/locus_tag="Cphamn1_0132"
/note="KEGG: bmu:Bmul_2660 catalase/peroxidase HPI"
/codon_start=1
/transl_table=11
/product="Catalase (peroxidase I)-like protein"
/protein_id="YP_001958592.1"
/db_xref="GI:189499122"
/db_xref="GeneID:6373781"
/translation="MSKNPDIASSASGLKTSKLKWTATRVDLIFGSNARLRAIAEVYG
SDNAQEKFVHDFVAAWNKVMNLDRFELG"
misc_feature complement(129968..>130129)
/locus_tag="Cphamn1_0132"
/note="Heme-dependent peroxidases similar to plant
peroxidases; Region: plant_peroxidase_like; cl00196"
/db_xref="CDD:241676"
gene 130286..130501
/locus_tag="Cphamn1_0133"
/db_xref="GeneID:6373782"
CDS 130286..130501
/locus_tag="Cphamn1_0133"
/note="TIGRFAM: addiction module component, TIGR02574
family;
PFAM: addiction module component CHP02574 family protein;
KEGG: cch:Cag_1129 hypothetical protein"
/codon_start=1
/transl_table=11
/product="addiction module protein"
/protein_id="YP_001958593.1"
/db_xref="GI:189499123"
/db_xref="InterPro:IPR013406"
/db_xref="GeneID:6373782"
/translation="MTIQEIEKKSLALNALDKIHLIEKLLSSLDKPDPEIEKAWIKEA
EERFAAYEKGELKAVPLEKVLKNIKRK"
misc_feature 130319..130480
/locus_tag="Cphamn1_0133"
/note="Putative addiction module component; Region:
Unstab_antitox; pfam09720"
/db_xref="CDD:220360"
gene 130851..132374
/locus_tag="Cphamn1_0134"
/db_xref="GeneID:6373783"
CDS 130851..132374
/locus_tag="Cphamn1_0134"
/note="PFAM: Integrase catalytic region;
KEGG: gur:Gura_0559 integrase, catalytic region"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_001958594.1"
/db_xref="GI:189499124"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6373783"
/translation="MKAIREIARLHLDKELSMRAIAASCKQSVSTVQGYVKKIEAVGL
DYSSLASLSDSELQERLRPAGKTCKASRPEPDIARLIAEIKKSKGKVTRQFLHEEYLA
QYPDGYKKTRFYELLREWEAQDKATMRMTHTPGEKMFIDFSGDKPSWIDPTTGEVFQP
ELYVAVLGGSSYTFACAVPSQKAEDFAMATVKALEFFGGCPQILVIDNLKSGVTHACY
YDPDINPTFADLARHYSVAVLPARVRKPKDKGKVESGVLQVQRRILAPLRNRQFFSLE
ELNGAIADELEKLNNRPMRQYGKSRRELFMELEKHRLASLPQTRFSIGYWSKAKVHID
YHVSVDKSFYSVPYTLIGKPVDIKRTAHQVTVYHDGEVVARHIRTLKRGQYITDPHHM
PYEHRFYKEWSPERIRSWGAKIGPNTARLLERIMQQRRTPEHGFRSCLGILRLARMFT
PERLERASRKALEQNMTTYKSIKSMLDNGLDAVTLFEEQEPSPTISHQNIRGGGYYA"
misc_feature 130938..131762
/locus_tag="Cphamn1_0134"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature 131250..131612
/locus_tag="Cphamn1_0134"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature <131823..132368
/locus_tag="Cphamn1_0134"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
gene 132367..133104
/locus_tag="Cphamn1_0135"
/db_xref="GeneID:6373784"
CDS 132367..133104
/locus_tag="Cphamn1_0135"
/note="PFAM: IstB domain protein ATP-binding protein;
KEGG: gur:Gura_0558 IstB domain protein ATP-binding
protein"
/codon_start=1
/transl_table=11
/product="IstB domain-containing protein ATP-binding
protein"
/protein_id="YP_001958595.1"
/db_xref="GI:189499125"
/db_xref="InterPro:IPR002611"
/db_xref="GeneID:6373784"
/translation="MLEQVKEQLVVMKLHGMAEALDTQIRTPLAADMDFSERLQLLVE
QEKSFRESRKLTLLLRKARLRYPDACLEELHVSPKRGICKATVMDLARNEWIKNHRNL
IITGPTGAGKTWLACAFGVAACRAGISTAYVRLSRLLHDLNIGRADGSYRKLLERLAR
IQLLIIDDWGMSPLNDAGKRDILEIMEDRHNVQSTLISTQYPVSQWHQLINDPTLADA
ICDRLIHNAYQLPLKGESMRKMLAKME"
misc_feature 132367..133083
/locus_tag="Cphamn1_0135"
/note="DNA replication protein [DNA replication,
recombination, and repair]; Region: DnaC; COG1484"
/db_xref="CDD:224401"
misc_feature 132649..132972
/locus_tag="Cphamn1_0135"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 132682..132705
/locus_tag="Cphamn1_0135"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(132685..132708,132865..132867,132964..132966)
/locus_tag="Cphamn1_0135"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 132853..132870
/locus_tag="Cphamn1_0135"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 133215..133412
/locus_tag="Cphamn1_0136"
/db_xref="GeneID:6373785"
CDS 133215..133412
/locus_tag="Cphamn1_0136"
/note="KEGG: cch:Cag_1130 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958596.1"
/db_xref="GI:189499126"
/db_xref="GeneID:6373785"
/translation="MREVEQAKKNILTFPLAWSSVGKEQRKYVLPRFPYLIIYKVYCD
RVVVAAFAHQHRLPENYINRK"
gene 133613..133822
/locus_tag="Cphamn1_0137"
/db_xref="GeneID:6373786"
CDS 133613..133822
/locus_tag="Cphamn1_0137"
/note="KEGG: plt:Plut_1918 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958597.1"
/db_xref="GI:189499127"
/db_xref="GeneID:6373786"
/translation="MRGVHERVHKHRKKLRKEGMRPIQIWVPDTSLSGFAEECKRQSQ
QVEHDPQEKELLEFLDEASDHEGWE"
misc_feature 133622..133816
/locus_tag="Cphamn1_0137"
/note="Protein of unknown function (DUF3018); Region:
DUF3018; pfam11455"
/db_xref="CDD:151894"
gene 133822..134046
/locus_tag="Cphamn1_0138"
/db_xref="GeneID:6373787"
CDS 133822..134046
/locus_tag="Cphamn1_0138"
/note="KEGG: ppd:Ppro_0140 transposase, IS4 family
protein"
/codon_start=1
/transl_table=11
/product="transposase, IS4 family protein"
/protein_id="YP_001958598.1"
/db_xref="GI:189499128"
/db_xref="GeneID:6373787"
/translation="MKNAVKTQIWIVISVYVLIALAKKKLNLDITLYTFLQILSVSVF
EQLNILQLVTNSAGTNHGTFTCKQLNLFDL"
gene complement(134054..135076)
/locus_tag="Cphamn1_0139"
/db_xref="GeneID:6373788"
CDS complement(134054..135076)
/locus_tag="Cphamn1_0139"
/note="KEGG: tva:TVAG_110290 viral A-type inclusion
protein, Pfam: XLF HSBP1 Baculo_PEP_C Ribosomal_LX EzrA
Syntaxin Syntaxin-6_N TSC22 Rad50_zn_hook Spectrin
Laminin_I Prefoldin THOC7 TBPIP Seryl_tRNA_N DUF593 DUF148
TACC PspA_IM30 Rab5-bind M Myosin_tail_1 Troponin Filament
Tektin Tup_N Phage_GP20 GBP_C DUF827 MAP65_ASE1
Alpha-2-MRAP_C Fez1 BRE1 Prefoldin_2 FlgM
Ribosomal_L30_N Laminin_II Microtub_assoc PROSITE:
GLN_RICH GLU_RICH LYS_RICH"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958599.1"
/db_xref="GI:189499129"
/db_xref="GeneID:6373788"
/translation="MEFMELVVLLVIIGFFALAIYNGKITLFIVTGLFLAMFIFLKIY
EKVKAQEAERKDAERTREWKRKADEEAERARELKRKADEEARIKKHKEEQERLFNNMI
TLGNKSLSVFEEIPEHIRTAEEYLNQAEIDLKERAFAPFWDSIEYATTSLGHFDEGVK
QINNNLSQYTELIKKYDNIPPQFPLARKSADKLSIANSASGRMKVIVRSAQCDFHFAT
IYEQRKTNQILVAGFTNLAQALNRIEWQISKSMANLAKSVDIMSSTLNDSMDHLADSV
DSMSSTLNYSMNETHSRLDDMAQSVDHHHNELLKIKNDQVAREKRALKMLDNIQHHRK
PSIFDQ"
misc_feature complement(134939..>135052)
/locus_tag="Cphamn1_0139"
/note="Phospholipid methyltransferase; Region: PEMT;
cl17370"
/db_xref="CDD:247924"
gene 135289..135645
/locus_tag="Cphamn1_0140"
/db_xref="GeneID:6373789"
CDS 135289..135645
/locus_tag="Cphamn1_0140"
/note="KEGG: plt:Plut_0979 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958600.1"
/db_xref="GI:189499130"
/db_xref="GeneID:6373789"
/translation="MQFVFGLMDFDLVAKGCDKCYFMLKGVKIMSKTKGVKLDDTTQQ
RLAALARIRDRSPHWLMCKAIETFLDREERYEQEKREDMERWERYQLTGDAVPHEKAA
EWIENLAQGKVTACPK"
misc_feature 135376..135612
/locus_tag="Cphamn1_0140"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG3905"
/db_xref="CDD:226420"
gene 135633..135923
/locus_tag="Cphamn1_0141"
/db_xref="GeneID:6373790"
CDS 135633..135923
/locus_tag="Cphamn1_0141"
/note="PFAM: plasmid stabilization system;
KEGG: plt:Plut_0980 protein of the plasmid stabilization
system"
/codon_start=1
/transl_table=11
/product="plasmid stabilization system"
/protein_id="YP_001958601.1"
/db_xref="GI:189499131"
/db_xref="InterPro:IPR007712"
/db_xref="GeneID:6373790"
/translation="MSQIKWLLEALADVERLHAFLHEKSPDAAARAAKVILDGAGLLK
SIPEIGRPMDDNTGRRELVISFGAGAFVLRYMWDKHDTVVIIRVWHSKENRP"
misc_feature 135642..135914
/locus_tag="Cphamn1_0141"
/note="Plasmid stabilisation system protein; Region:
Plasmid_stabil; pfam05016"
/db_xref="CDD:218385"
gene complement(136014..136337)
/locus_tag="Cphamn1_0142"
/db_xref="GeneID:6373791"
CDS complement(136014..136337)
/locus_tag="Cphamn1_0142"
/note="PFAM: protein of unknown function DUF45;
KEGG: ava:Ava_1155 metal-dependent hydrolase-like"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958602.1"
/db_xref="GI:189499132"
/db_xref="InterPro:IPR002725"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:6373791"
/translation="MTAENPKIRFKQRVREWAEKLDVRVVWLGVRPMKNKWASCSTEG
RLNFNVELLDMDERVWDYVIVHELLHFFVPNHGILCKSLMRAHLGEYEPYEAELKKTV
RKRSR"
misc_feature complement(136038..>136319)
/locus_tag="Cphamn1_0142"
/note="Protein of unknown function DUF45; Region: DUF45;
cl00636"
/db_xref="CDD:241996"
gene 136462..136749
/locus_tag="Cphamn1_0143"
/pseudo
/db_xref="GeneID:6373792"
gene complement(136740..136863)
/locus_tag="Cphamn1_0144"
/pseudo
/db_xref="GeneID:6373793"
gene complement(137055..137675)
/locus_tag="Cphamn1_0145"
/db_xref="GeneID:6373794"
CDS complement(137055..137675)
/locus_tag="Cphamn1_0145"
/note="KEGG: bmn:BMA10247_1541 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958603.1"
/db_xref="GI:189499133"
/db_xref="GeneID:6373794"
/translation="MALNEVLMIVAIILAPVIAVQVQKWLEIFREERGRRLRIFKTLM
ATRAANVSPEHVQALNMIDLEFQGKRYKSVTDAWKTYLDHLASFPKDSEEAIQQQWVD
KRIDRLTTLLMEMGKCLGYEFDEVHVKKGVYAPEAHGQLENENMLIRRGLLRLLYGDS
ALKMDLESIPVSQDEASEQKAIRKALLNVLIGEKAISIRGDLKRDN"
gene complement(138836..140233)
/locus_tag="Cphamn1_0146"
/db_xref="GeneID:6373795"
CDS complement(138836..140233)
/locus_tag="Cphamn1_0146"
/note="KEGG: plt:Plut_1857 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958604.1"
/db_xref="GI:189499134"
/db_xref="GeneID:6373795"
/translation="MAKDKTIQGKKEQQICAILPSDDQLTGRAGLSVFALYLRNIGLF
PIIDRLFGTVRKNGKGLAVTEMFVQILSFFMDGTSRHLNWFDHLAADDAYAGLLGTGR
LASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEK
RHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHGNTVNEMLVHMVRKIRNAY
REEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVET
DSKSWMYTEFMSRQKKWKKERRTIFSTLWEEDGQYLLQGICRDSVIITNMGMGEKIDE
QLTKVGRGDLLDAGKLLGLYHERGTDELTNRALKTFGHEQLPFKRFTANSAWYYLMVL
GNNLFEAFKEDVTEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKF
DQLYEKCRVGLPRLE"
misc_feature complement(139064..>139927)
/locus_tag="Cphamn1_0146"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:222326"
gene complement(140559..141300)
/locus_tag="Cphamn1_0147"
/pseudo
/db_xref="GeneID:6373796"
gene complement(141318..142880)
/locus_tag="Cphamn1_0148"
/db_xref="GeneID:6373797"
CDS complement(141318..142880)
/locus_tag="Cphamn1_0148"
/note="PFAM: Integrase catalytic region;
KEGG: plt:Plut_1830 transposase subunit"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_001958605.1"
/db_xref="GI:189499135"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:6373797"
/translation="MANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVER
FKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTRQ
RLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDP
VAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMA
QVVTKPSRYEPVFTELVEQWALHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMR
NECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEHLAPLPPKHFVYKHQ
AKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVR
NGYSTIKEHMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYD
ACIGLLRLAKGFGRKRLENACSLALQGSRVTYRIVKTILENNRDKLVLPTEEQAPMLP
FHENIRGKHFYN"
misc_feature complement(142734..142862)
/locus_tag="Cphamn1_0148"
/note="Homeodomain-like domain; Region: HTH_23; pfam13384"
/db_xref="CDD:222091"
misc_feature complement(142080..>142607)
/locus_tag="Cphamn1_0148"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature complement(142089..142457)
/locus_tag="Cphamn1_0148"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene complement(142952..143452)
/locus_tag="Cphamn1_0149"
/db_xref="GeneID:6373798"
CDS complement(142952..143452)
/locus_tag="Cphamn1_0149"
/note="KEGG: cch:Cag_1372 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958606.1"
/db_xref="GI:189499136"
/db_xref="GeneID:6373798"
/translation="MLVDVDRIIKSHGQLNHQGMGRRGLGHITRSGVLMLCAAWELYL
EELAVECARIFIKRIDSPGQLPLPVQKEISKVVRDSKHELKPLELAGNGWATILQNHV
GQSVSILNTPKSNNLDPLFKRLLGVEKLSSFWSKGEFSGAYCTTYSGLNCTTCSGAMC
TRHSGA"
gene 143831..144963
/locus_tag="Cphamn1_0150"
/pseudo
/db_xref="GeneID:6373799"
gene complement(144942..145241)
/locus_tag="Cphamn1_0151"
/db_xref="GeneID:6373800"
CDS complement(144942..145241)
/locus_tag="Cphamn1_0151"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958607.1"
/db_xref="GI:189499137"
/db_xref="GeneID:6373800"
/translation="MEKIINNLSSPAWWVTAMFAGIAASLLAAYAKPLLDKLGNKVSR
SLRIRNQAKKKAFDDHVSSLRGKVEKQKLEAIEVNHYRLRGIYFLLVSCQTQNDG"
sig_peptide complement(145146..145241)
/locus_tag="Cphamn1_0151"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.996) with cleavage site probability 0.868 at
residue 32"
gene complement(145580..147778)
/locus_tag="Cphamn1_0152"
/db_xref="GeneID:6373801"
CDS complement(145580..147778)
/locus_tag="Cphamn1_0152"
/note="TIGRFAM: catalase/peroxidase HPI;
PFAM: Haem peroxidase;
KEGG: ppd:Ppro_1387 catalase/peroxidase HPI"
/codon_start=1
/transl_table=11
/product="catalase/peroxidase HPI"
/protein_id="YP_001958608.1"
/db_xref="GI:189499138"
/db_xref="InterPro:IPR000763"
/db_xref="InterPro:IPR002016"
/db_xref="GeneID:6373801"
/translation="MSEHSRCPVTGRTAGNPVAGGGIANRDWWPNQLHLDMLHQHSSL
SNPMEEAFKYKEEFGKLDLKAVKKDLYTLMTDSQEWWPADYGHYGGLFIRMTWHSAGT
YRTGDGRGGGGTGNQRFAPLNSWPDNANLDKARRLLWPIKQKYGKKLSWADLMILAGN
YALESMGFKTFGFGGGRVDIWEPEEDIYWGKEVEWLDNKRYSGERDLENPLAAVQMGL
IYVNPEGPDGKPDPVAAGKDIRETFGRMAMNDEETVALVAGGHTFGKCHGVGDPKLVG
PEPEAADIEEQGLGWKSGYGSGKGDETMTSGLEGAWTPDPIHWDMGYLGMLFKYEWEL
TKSPAGAWQWKPTDVAEEDLAPAAHDPSKRVPTMMTTADLAMRMDPIYGPISRRYYEH
PDQFADAFARAWFKLTHRDMGPKSRYLGTEVPEEDLIWQDPVPAVDHELIGDREIAEL
KKRLLASGLSIPELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPEQLKIV
LQKLEEIRQEFNDAQSGGKRVSLADLIVLGGCAGVEEAARKAGTDVTIPFTPGRTDAS
QEQTDTESFAVLEPLADGFRNYMKKKYSVSAEEMLVDRSQLLTLTAPEMTVLVGGLRV
LNVNFGQSPHGVFTTLPETLTNDFFVNLLDMGTEWKPLSKEHDTFEGRDRKTGEPRWT
ATRVDLIFGSNSRLRAIAEVYGSDNAQEKFVHDFVAAWNKVMNLDRFELG"
misc_feature complement(145586..147775)
/locus_tag="Cphamn1_0152"
/note="catalase/hydroperoxidase HPI(I); Provisional;
Region: PRK15061"
/db_xref="CDD:237891"
misc_feature complement(146495..147721)
/locus_tag="Cphamn1_0152"
/note="N-terminal catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_1;
cd00649"
/db_xref="CDD:173824"
misc_feature complement(order(146912..146920,146924..146929,
146939..146941,146945..146947,147194..147202,
147215..147220,147224..147226,147230..147238,
147326..147328,147338..147343,147350..147352,
147362..147364,147371..147373,147407..147412,
147416..147427,147539..147541,147662..147664,
147677..147679,147683..147685,147692..147700,
147704..147721))
/locus_tag="Cphamn1_0152"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(order(146567..146569,146579..146581,
146663..146665,146669..146671,146843..146845,
146861..146866,146978..146992,146996..147001,
147008..147013,147050..147052,147110..147112,
147116..147118,147488..147490,147497..147502,
147506..147511))
/locus_tag="Cphamn1_0152"
/note="active site"
/db_xref="CDD:173824"
misc_feature complement(order(146567..146569,146579..146581,
146663..146665,146669..146671,146843..146845,
146861..146866,146978..146992,146996..147001,
147008..147013,147050..147052,147110..147112,
147116..147118,147488..147490,147497..147502,
147506..147511))
/locus_tag="Cphamn1_0152"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(145595..146485)
/locus_tag="Cphamn1_0152"
/note="C-terminal non-catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_2;
cd08200"
/db_xref="CDD:173828"
gene complement(148049..148468)
/locus_tag="Cphamn1_0153"
/db_xref="GeneID:6373802"
CDS complement(148049..148468)
/locus_tag="Cphamn1_0153"
/note="PFAM: ferric-uptake regulator;
KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins"
/codon_start=1
/transl_table=11
/product="Fur family ferric uptake regulator"
/protein_id="YP_001958609.1"
/db_xref="GI:189499139"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:6373802"
/translation="MKQEHPKKPYRNSRQRTRLLEIMRATDSHPTAACLYDQLKPEFP
ALSLGTVYRNLALLVDQGLVRKIDAGSTFDRFEAKTEPHYHLICSKCGKIADFEEQIF
ANLNDVISRSTDFAIESHRIDFYGICPLCKKENRNRS"
misc_feature complement(148085..148429)
/locus_tag="Cphamn1_0153"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(148181..148183,148214..148216,
148220..148222,148238..148240,148382..148384))
/locus_tag="Cphamn1_0153"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(148286..148330)
/locus_tag="Cphamn1_0153"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(148109..148111,148160..148162,
148217..148219,148223..148225))
/locus_tag="Cphamn1_0153"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(148088..148114,148118..148126,
148151..148156,148202..148210))
/locus_tag="Cphamn1_0153"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(148085..148087,148196..148198,
148205..148207))
/locus_tag="Cphamn1_0153"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 149109..150603
/locus_tag="Cphamn1_R0008"
/db_xref="GeneID:6373803"
rRNA 149109..150603
/locus_tag="Cphamn1_R0008"
/product="16S ribosomal RNA"
/db_xref="GeneID:6373803"
gene 150770..150846
/locus_tag="Cphamn1_R0009"
/note="tRNA-Ile2"
/db_xref="GeneID:6373804"
tRNA 150770..150846
/locus_tag="Cphamn1_R0009"
/product="tRNA-Ile"
/db_xref="GeneID:6373804"
gene 150882..150954
/locus_tag="Cphamn1_R0010"
/note="tRNA-Ala2"
/db_xref="GeneID:6373805"
tRNA 150882..150954
/locus_tag="Cphamn1_R0010"
/product="tRNA-Ala"
/db_xref="GeneID:6373805"
gene 151107..154024
/locus_tag="Cphamn1_R0011"
/db_xref="GeneID:6373806"
rRNA 151107..154024
/locus_tag="Cphamn1_R0011"
/product="23S ribosomal RNA"
/db_xref="GeneID:6373806"
gene 154128..154236
/locus_tag="Cphamn1_R0012"
/db_xref="GeneID:6373807"
rRNA 154128..154236
/locus_tag="Cphamn1_R0012"
/product="5S ribosomal RNA"
/db_xref="GeneID:6373807"
gene 154492..155637
/locus_tag="Cphamn1_0154"
/db_xref="GeneID:6373808"
CDS 154492..155637
/locus_tag="Cphamn1_0154"
/note="KEGG: noc:Noc_1786 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958610.1"
/db_xref="GI:189499140"
/db_xref="GeneID:6373808"
/translation="MNARVSDYPAVIFSSVEPPCLSLYQKTHRHHPENQQDPIRFRNL
VKRLEESLSKTYAKREIELLLKPFYDLADDHRFWNHTLDGLAVLGASNMFKTYRLQED
VRDIAVVSDTFYTKPLVRIFKSSERYQLLAVSRKSVRLFEGTKVSLDEVELHESIPKT
LIDALGEDVTPPHQTVASYGGTRGPAMHHGHGGKKPEEKIDAERFFRIIDKGVLAHYS
NHEHLPLVLAALPENQGLFRQISQNPWLVEKGLDLNPDAMQSSDLKAKARDVFEEYNR
LRLQALIELYGDAFASGLGSGDLEEVAVAAASGRISMLFIDNDYHMPACLDRSTGKFE
PDDPDNPVSGDLLDDIGELVLQKGGDVHVVQPESMPTRTGIAAVFRF"
gene 155665..156312
/locus_tag="Cphamn1_0155"
/db_xref="GeneID:6373809"
CDS 155665..156312
/locus_tag="Cphamn1_0155"
/note="PFAM: multiple antibiotic resistance (MarC)-related
protein;
KEGG: ppr:PBPRB0594 hypothetical protein"
/codon_start=1
/transl_table=11
/product="multiple antibiotic resistance (MarC)-like
protein"
/protein_id="YP_001958611.1"
/db_xref="GI:189499141"
/db_xref="InterPro:IPR002771"
/db_xref="GeneID:6373809"
/translation="MHELLSHTLVMVGGYFAIMNPLANTAIFTAVTAGMDDRGIKKTA
LSAVVTALCIVLCFILLGRIIFDFFGITLPALRVAGGIMVFFIGFDMMHGRTSAAHAP
AGGGASGTPGQNLGISPLGIPILAGPGTIAVSMSYSATGNGLDIAVNALVFSVMCLIT
YVFFLLGEKVEQKLGREGLKVITQIMGLILSVIGVQIGIEGIFGAISLFQQHHAV"
misc_feature 155710..156282
/locus_tag="Cphamn1_0155"
/note="MarC family integral membrane protein; Region:
MarC; pfam01914"
/db_xref="CDD:216782"
gene 156346..156696
/locus_tag="Cphamn1_0156"
/db_xref="GeneID:6373810"
CDS 156346..156696
/locus_tag="Cphamn1_0156"
/note="KEGG: pgi:PG0423 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958612.1"
/db_xref="GI:189499142"
/db_xref="GeneID:6373810"
/translation="MMFPFLQRLLVFAFLVLLSCGDSPQSVAKNFTENLAKGRISEAK
KYATEPTGEMLEFASKIGAMPVNPDFTFVFVEKTVEGDKATVVYRESVDGPDERINLV
RIDGKWMVHLQPVK"
sig_peptide 156346..156432
/locus_tag="Cphamn1_0156"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.986) with cleavage site probability 0.965 at
residue 29"
misc_feature 156400..156675
/locus_tag="Cphamn1_0156"
/note="Lumazine-binding domain; Region: Lumazine_bd;
pfam12870"
/db_xref="CDD:221820"
gene 156719..157303
/locus_tag="Cphamn1_0157"
/db_xref="GeneID:6373811"
CDS 156719..157303
/locus_tag="Cphamn1_0157"
/note="PFAM: protein of unknown function DUF1105;
KEGG: pgi:PG0424 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958613.1"
/db_xref="GI:189499143"
/db_xref="InterPro:IPR010529"
/db_xref="GeneID:6373811"
/translation="MLFCLFLLTVIPVQTIEKTRFNTTHPLDERRLENGDIILRYGKG
LWSQFFRDVSRRDKRFSHAGIVVREEGAFYVIHAAAAELTGVGKVTCDPLGAFLEASS
DYAVYRLAVSGPVRQKIAHNARNYLGVSFDTSFDLSEQERLYCTEMVMQAVNKATGFV
VIRPTAASGIAVVAPDNCYEHRLVRSVIAGPGES"
misc_feature 156809..157279
/locus_tag="Cphamn1_0157"
/note="Orthopoxvirus protein of unknown function (DUF830);
Region: DUF830; pfam05708"
/db_xref="CDD:218710"
gene 157348..157773
/locus_tag="Cphamn1_0158"
/db_xref="GeneID:6373812"
CDS 157348..157773
/locus_tag="Cphamn1_0158"
/note="PFAM: thioesterase superfamily protein;
KEGG: cte:CT2140 hypothetical protein"
/codon_start=1
/transl_table=11
/product="thioesterase superfamily protein"
/protein_id="YP_001958614.1"
/db_xref="GI:189499144"
/db_xref="InterPro:IPR006683"
/db_xref="GeneID:6373812"
/translation="MQDYAYTLPMSVRDYECDMQGIVNNSVYQNYLEHARHEYLKSVG
MDFKMYAQEGINLVVVRAELDYKYPLESGDGFIVGLNMVRESKLKFAFYQDIFREKDK
KLILKAKIIGTALNQLGRPEIPEKLDTFLHNDASAFTTK"
misc_feature 157363..157644
/locus_tag="Cphamn1_0158"
/note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation pathway
in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT
forms a homotetramer with four active sites; Region: 4HBT;
cd00586"
/db_xref="CDD:238329"
misc_feature order(157444..157446,157516..157518,157522..157524,
157603..157614)
/locus_tag="Cphamn1_0158"
/note="active site"
/db_xref="CDD:238329"
gene 157783..158307
/locus_tag="Cphamn1_0159"
/db_xref="GeneID:6373813"
CDS 157783..158307
/locus_tag="Cphamn1_0159"
/note="KEGG: cte:CT2138 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958615.1"
/db_xref="GI:189499145"
/db_xref="GeneID:6373813"
/translation="MKPLKQVAQAYMALSEGEKRLKEEAFEEAVAEYRKAMDVTRTIP
EEEVFDHDGFDALCHAGLSGAFAKLGRYDECLLSADNALHYFNRRGELHQDEGKLWIA
AVVNRAVGLAGTGRSSDALKAFRMADEMVAERKGEIDDKERLQKMIADNIAMLQTSMP
EDTAKRKAWWEFWS"
misc_feature 157786..158211
/locus_tag="Cphamn1_0159"
/note="Domain of Unknown Function (DUF3856); Region:
DUF3856; pfam12968"
/db_xref="CDD:193441"
gene 158308..159345
/locus_tag="Cphamn1_0160"
/db_xref="GeneID:6373814"
CDS 158308..159345
/locus_tag="Cphamn1_0160"
/note="PFAM: glycosyl transferase family 9;
KEGG: plt:Plut_0112 heptosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001958616.1"
/db_xref="GI:189499146"
/db_xref="InterPro:IPR002201"
/db_xref="GeneID:6373814"
/translation="MALRPEKNQEIGKILVIRLSSIGDIVLTTPVLRRLRAAYPDAVI
DYCIKPPFASLLNASPYLNTVYTTASPPDGHYDMVVDLQNNLRSRKILKNISCDAVCR
YHKMNWKKLLLVRTGLNLFRAPDSVVERYMASIPWNGKGCDGMGCELWLSEDDRGFAA
SFNAGDEYRLAVCFGANHLTKRYPPLRFASIIELLGRRHRLQFFLLGGTEDVRHAEEI
IAALSSGTASSVVNLAGKTSLTRSAAVLESCDAVLSNDTGLMHVASSFGKQLFVLFGS
SVAEFGFLPYNAPYSLFEVRNLSCRPCSHIGRDRCPKGHFRCMMDISETSVSEKISDY
FKKENLKRDSL"
misc_feature 158344..159306
/locus_tag="Cphamn1_0160"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature 158344..159300
/locus_tag="Cphamn1_0160"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature order(158821..158826,158923..158925,159031..159036,
159070..159072,159079..159084,159091..159093)
/locus_tag="Cphamn1_0160"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 159342..160112
/locus_tag="Cphamn1_0161"
/db_xref="GeneID:6373815"
CDS 159342..160112
/locus_tag="Cphamn1_0161"
/EC_number="3.1.11.2"
/note="KEGG: cte:CT2136 AP (apurinic or apyrimidinic)
endonuclease, Xth family;
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease
III Xth;
PFAM: Endonuclease/exonuclease/phosphatase"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III Xth"
/protein_id="YP_001958617.1"
/db_xref="GI:189499147"
/db_xref="InterPro:IPR000097"
/db_xref="InterPro:IPR004808"
/db_xref="InterPro:IPR005135"
/db_xref="GeneID:6373815"
/translation="MRIASWNINGIRARRDSLLGWIDRKKPDILVLEELKAQEKDIPE
EIVAMQGYKKYWNGSAFRKGYSGVGLLLKEGLCGECRLEIPEFDCENRTVVLHGSNLS
VIGTYVPRGDGDAHYAVKLGYLSDLGTYILELLREGRQVIHTGDINVAHTDLDVHHSQ
NKPGIVGLRPEERAAIDRHLEIGLHDIMRERFPDKKDMFTWWPYWKGARERNLGWRID
CFYLSKGLIGDVVDVRIDSAEKSSDHAPVILDIRSCAL"
misc_feature 159342..160097
/locus_tag="Cphamn1_0161"
/note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily; Region: EEP; cl00490"
/db_xref="CDD:241900"
misc_feature order(159360..159362,159441..159443,159660..159662,
159777..159779,159783..159785,159993..159995,
160068..160073)
/locus_tag="Cphamn1_0161"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature order(159441..159443,160068..160070)
/locus_tag="Cphamn1_0161"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature order(159660..159662,159783..159785,160071..160073)
/locus_tag="Cphamn1_0161"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
gene 160326..160730
/gene="rpsF"
/locus_tag="Cphamn1_0162"
/db_xref="GeneID:6373816"
CDS 160326..160730
/gene="rpsF"
/locus_tag="Cphamn1_0162"
/note="binds cooperatively with S18 to the S15-16S
complex, allowing platform assembly to continue with S11
and S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_001958618.1"
/db_xref="GI:189499148"
/db_xref="InterPro:IPR000529"
/db_xref="GeneID:6373816"
/translation="MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVL
EVGRRTMAYPIGKQTIGSYAHIEFRGEPSGLAAIETAFRYNENILRFLIVHLSTPLLE
MRKRVEKYSVVIGSPEDQSEEDQQEESVAAKK"
misc_feature 160338..160658
/gene="rpsF"
/locus_tag="Cphamn1_0162"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 160798..161280
/locus_tag="Cphamn1_0163"
/db_xref="GeneID:6373817"
CDS 160798..161280
/locus_tag="Cphamn1_0163"
/note="TIGRFAM: single-strand binding protein;
PFAM: single-strand binding protein/Primosomal replication
protein n;
KEGG: pvi:Cvib_0182 single-strand binding protein"
/codon_start=1
/transl_table=11
/product="single-strand binding protein"
/protein_id="YP_001958619.1"
/db_xref="GI:189499149"
/db_xref="InterPro:IPR000424"
/db_xref="InterPro:IPR011344"
/db_xref="GeneID:6373817"
/translation="MAELKMPEINSVVIAGNLTKDPVFRQTNSGGTPVVNFSIACNRR
FRDSNHQWQEDVCYVGVVAWNKLAESCRDNLKRSAAVLVDGELQSRTWKAQDGSSRTV
VEIKARRIQFLNKRKKHEDEDGISGFVEDDSHSENGMEHNSRGDGAGHVYEYKYLSSE
"
misc_feature 160822..>161178
/locus_tag="Cphamn1_0163"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:223702"
misc_feature 160831..161136
/locus_tag="Cphamn1_0163"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:239942"
misc_feature order(160831..160842,160918..160926,160966..160968,
160972..160974,161035..161037,161062..161064,
161095..161097,161104..161106)
/locus_tag="Cphamn1_0163"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239942"
misc_feature order(160846..160854,160870..160872,160903..160905,
160924..160929,160960..160965,160969..160971,
160975..160977,160981..160983,160987..160989,
161026..161031,161053..161055,161059..161061,
161065..161070,161107..161109,161113..161115)
/locus_tag="Cphamn1_0163"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:239942"
misc_feature order(161035..161037,161041..161043,161047..161049,
161128..161130)
/locus_tag="Cphamn1_0163"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239942"
gene 161314..161577
/gene="rpsR"
/locus_tag="Cphamn1_0164"
/db_xref="GeneID:6373818"
CDS 161314..161577
/gene="rpsR"
/locus_tag="Cphamn1_0164"
/note="binds as a heterodimer with protein S6 to the
central domain of the 16S rRNA; helps stabilize the
platform of the 30S subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_001958620.1"
/db_xref="GI:189499150"
/db_xref="InterPro:IPR001648"
/db_xref="GeneID:6373818"
/translation="MKQRRTNTSMNKSISNALVSKKKVSKNQVVFFDYRDERKLKRFI
NDQGKIIPRRITGLSAKEQNLLTHSVKWARFLSIIPYVADEYK"
misc_feature <161404..161565
/gene="rpsR"
/locus_tag="Cphamn1_0164"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 161627..162073
/gene="rplI"
/locus_tag="Cphamn1_0165"
/db_xref="GeneID:6373819"
CDS 161627..162073
/gene="rplI"
/locus_tag="Cphamn1_0165"
/note="in Escherichia coli this protein is wrapped around
the base of the L1 stalk"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_001958621.1"
/db_xref="GI:189499151"
/db_xref="InterPro:IPR000244"
/db_xref="GeneID:6373819"
/translation="MKVILRKDISTLGDAGEVVDVKNGYANNYLIPQGIALRATEGTL
KALETERKQQARKIEQQRIAAREVADKVQQLNLKVLAKAGESGKLFGTVTSGDIAEAL
SNEGVSVDRRKISLESPIKTLGAYEVGVKLFMDVSATLKITVEAES"
misc_feature 161627..162067
/gene="rplI"
/locus_tag="Cphamn1_0165"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:234659"
misc_feature 161627..161770
/gene="rplI"
/locus_tag="Cphamn1_0165"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 161816..162067
/gene="rplI"
/locus_tag="Cphamn1_0165"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene 162233..162478
/locus_tag="Cphamn1_0166"
/db_xref="GeneID:6373820"
CDS 162233..162478
/locus_tag="Cphamn1_0166"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958622.1"
/db_xref="GI:189499152"
/db_xref="GeneID:6373820"
/translation="MTNKDTLLLKAKQEAGDCPHDHKCLEGKQGHLCKVIAEYGEKVL
FVQNTTQKNITAYCNSFADECLCTCPVRYCLFKESGQ"
gene 162619..163011
/locus_tag="Cphamn1_0167"
/db_xref="GeneID:6373821"
CDS 162619..163011
/locus_tag="Cphamn1_0167"
/note="KEGG: pvi:Cvib_0185 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958623.1"
/db_xref="GI:189499153"
/db_xref="GeneID:6373821"
/translation="MRQALFQEKYPIYTLEIDKTETSLTSVDEIIFALHNRIDEHPLV
AYIGIFDHYAHTRSLKEGVVSDRILAAKNILFCFGKELPNPLVLSVRPRSIGVAELEN
SFVITFLEAPNPVANDAMESWALSLRDR"
gene complement(163100..164128)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/db_xref="GeneID:6373822"
CDS complement(163100..164128)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_001958624.1"
/db_xref="GI:189499154"
/db_xref="InterPro:IPR002319"
/db_xref="InterPro:IPR004529"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:6373822"
/translation="MKNRIEAIKQQIDAFELNSADKLEAFRLQFLVRKGSIAELFNQL
KELSPVDRPEYGQRLNKLKKFAESTYEEAEKKLDVLASGKGKQHRDLTLPGRRQYTGS
EHPVQQVLGDMKQIFKAMGFTIATGPELELDSYNFDKLNFPSNHPARDMQDTFFITKN
GKDDDLLLRTHTSPVQIRVMLDEKPPIRVICPGKVYRNEAISARSYCVFHQLEGLYID
KRVSFADLKATIYSFAKQMFGSDVQLRFRPSFFPFTEPSAEVDVTCYLCGGKGCRVCK
QSGWLEILGCGMVHPNVLRNCSIDPDEYSGFAFGMGVDRTALLRYKIDDIRLLFENDV
RMLEQFSR"
misc_feature complement(163109..164128)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:234780"
misc_feature complement(163898..164077)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature complement(163124..163819)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:238277"
misc_feature complement(order(163127..163135,163139..163141,
163256..163261,163352..163354,163358..163366,
163385..163387,163445..163450,163454..163462,
163511..163513,163535..163537,163541..163543,
163547..163549,163553..163555,163565..163573,
163592..163594,163652..163669,163679..163681,
163694..163696,163745..163753,163757..163762,
163775..163777,163796..163801,163808..163810,
163817..163819))
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238277"
misc_feature complement(163745..163765)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="motif 1; other site"
/db_xref="CDD:238277"
misc_feature complement(order(163151..163153,163184..163186,
163193..163204,163268..163285,163367..163372,
163376..163378,163490..163492,163496..163498,
163502..163504,163511..163519,163532..163534,
163538..163540,163601..163603,163610..163612,
163616..163618,163673..163681))
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="active site"
/db_xref="CDD:238277"
misc_feature complement(163532..163543)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="motif 2; other site"
/db_xref="CDD:238277"
misc_feature complement(163184..163201)
/gene="pheS"
/locus_tag="Cphamn1_0168"
/note="motif 3; other site"
/db_xref="CDD:238277"
gene complement(164152..164499)
/gene="rplT"
/locus_tag="Cphamn1_0169"
/db_xref="GeneID:6373823"
CDS complement(164152..164499)
/gene="rplT"
/locus_tag="Cphamn1_0169"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_001958625.1"
/db_xref="GI:189499155"
/db_xref="InterPro:IPR005812"
/db_xref="InterPro:IPR005813"
/db_xref="GeneID:6373823"
/translation="MPRATNSVASRARRKRILKKAKGYWGSRGTILTVAKHAVDKAEQ
YAYRDRRVKKRTFRSLWIMRINAAARENGTSYSRLMEAMNKKSIDINRKALAEIAVKD
PAAFSQIVKSAMG"
misc_feature complement(164167..164433)
/gene="rplT"
/locus_tag="Cphamn1_0169"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature complement(order(164218..164226,164248..164250,
164257..164262,164269..164274,164290..164292,
164302..164304,164311..164319,164323..164367,
164374..164379,164389..164394,164401..164412,
164416..164433))
/gene="rplT"
/locus_tag="Cphamn1_0169"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature complement(order(164173..164178,164194..164199,
164215..164217,164224..164235,164350..164352,
164359..164364,164368..164373,164380..164382,
164392..164394))
/gene="rplT"
/locus_tag="Cphamn1_0169"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature complement(order(164200..164202,164209..164211,
164218..164220,164290..164292,164296..164301,
164308..164310,164317..164322,164329..164331))
/gene="rplT"
/locus_tag="Cphamn1_0169"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene complement(164534..164728)
/gene="rpmI"
/locus_tag="Cphamn1_0170"
/db_xref="GeneID:6373824"
CDS complement(164534..164728)
/gene="rpmI"
/locus_tag="Cphamn1_0170"
/note="PFAM: ribosomal protein L35;
KEGG: cte:CT2128 50S ribosomal protein L35"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_001958626.1"
/db_xref="GI:189499156"
/db_xref="InterPro:IPR001706"
/db_xref="GeneID:6373824"
/translation="MPKMKSHRGACKRFKKTASGRVKREKMYGSHNLEKKNRKRTRRI
HQSTLVDKTQEKQIKRMILA"
misc_feature complement(164543..164728)
/gene="rpmI"
/locus_tag="Cphamn1_0170"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:234676"
gene complement(164758..165366)
/gene="infC"
/locus_tag="Cphamn1_0171"
/db_xref="GeneID:6373825"
CDS complement(164758..165366)
/gene="infC"
/locus_tag="Cphamn1_0171"
/note="IF-3 has several functions that are required and
promote translation initiation including; preventing
association of 70S by binding to 30S; monitoring
codon-anticodon interactions by promoting disassociation
of fMet-tRNA(fMet) from initiation complexes formed on
leaderless mRNAs or incorrectly bound noninitiatior tRNAs
and complexes with noncanonical start sites; stimulates
codon-anticodon interactions at P-site; involved in moving
mRNA to the P-site; and in recycling subunits"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_001958627.1"
/db_xref="GI:189499157"
/db_xref="InterPro:IPR001288"
/db_xref="GeneID:6373825"
/translation="MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAI
KMAEQEGLDLIEVQPTATPPVCKMDNYGKLQYKLDKNDRDRKKKSKPTSLKELRFHPN
TDKHDFDFKAAHLEEFLRKGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNRE
GSPKFEGKKLFVYFEPDKKKIEVHERMLAKMKKEQQNKEAEN"
misc_feature complement(164827..165354)
/gene="infC"
/locus_tag="Cphamn1_0171"
/note="translation initiation factor IF-3; Reviewed;
Region: infC; PRK00028"
/db_xref="CDD:234582"
misc_feature complement(165139..165324)
/gene="infC"
/locus_tag="Cphamn1_0171"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature complement(164836..165096)
/gene="infC"
/locus_tag="Cphamn1_0171"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene complement(165416..167395)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/db_xref="GeneID:6373826"
CDS complement(165416..167395)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="catalyzes a two-step reaction, first charging a
threonine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; catalyzes the formation
of threonyl-tRNA(Thr) from threonine and tRNA(Thr)"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_001958628.1"
/db_xref="GI:189499158"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR002320"
/db_xref="InterPro:IPR004095"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR012947"
/db_xref="GeneID:6373826"
/translation="MSENIDVQATVTVTFPDGRNMSIPSGSSGYDIAQSIGHSLAREA
LAIRINGELADLGTAVTDDATVEIITFDHPGATGKHIFWHSASHIMAQAIEELFPGTK
FGAGPAVEQGFYYDIASEHRFNEEDLQKIEQQMLDISKRSIDIRREEMPREKAIAFFS
ESRKDPYKVEILQDTLKEADSVSIYHQGAFADLCSGPHLPNTSKLKAVKLTNISASFW
RGDSSRESMQRIYGIAFPSAKLLKQHLARLEEAKKRDHRKLGAELELFMLSQDVGSGL
PIWLPKGAIIRSELEAFLKEEQRKRGYVPVYTPHIGNIDLYKRSGHYPYYSDSQFPPL
TYKDDLGREEQYLLKPMNCPHHHLIYSSQLRSYRDLPIRMAEFGTVYRHEQSGELNGL
IRARGFTQDDSHIYCRPDQLVDEICAAIDLTKFVFTTLGFDDIEVRLSLHDPENQGKY
GGTEEVWKQAEKDVREAADRMEINYVIGIGEASFYGPKIDFIVRDALGRKWQLGTVQV
DYVMPERFDLSYIGSDGKPHRPVIIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQVA
VLPITEEVHAYAERVHQMLIDNGIRADLDIRSEKIGKKIREAEVGKIPYMVIIGQKEA
DSEEISLRRHRKGDQGSLTLQALKDMLVKEVRNKS"
misc_feature complement(165419..167365)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:234752"
misc_feature complement(167183..167365)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature complement(166703..166852)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; pfam07973"
/db_xref="CDD:219676"
misc_feature complement(165710..166633)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:238394"
misc_feature complement(order(165767..165769,165776..165781,
165875..165877,165887..165892,165899..165901,
166196..166198,166202..166204,166211..166219,
166232..166240,166244..166246,166250..166252,
166346..166348,166406..166411,166418..166420,
166430..166432,166583..166585,166622..166624))
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="active site"
/db_xref="CDD:238394"
misc_feature complement(order(165827..165829,165833..165835,
165980..165988,166124..166126,166205..166210,
166238..166240,166247..166249,166253..166255,
166292..166300,166304..166312,166319..166324,
166358..166360,166364..166366,166385..166393,
166397..166405,166457..166459,166463..166471,
166475..166477,166481..166486,166496..166501,
166544..166546,166553..166555,166559..166564,
166568..166570,166574..166576,166580..166588,
166592..166594,166610..166612))
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238394"
misc_feature complement(166463..166486)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="motif 1; other site"
/db_xref="CDD:238394"
misc_feature complement(166244..166255)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="motif 2; other site"
/db_xref="CDD:238394"
misc_feature complement(165767..165781)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="motif 3; other site"
/db_xref="CDD:238394"
misc_feature complement(165440..165712)
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:238437"
misc_feature complement(order(165500..165502,165506..165508,
165536..165538,165560..165562,165578..165580,
165683..165688))
/gene="thrS"
/locus_tag="Cphamn1_0172"
/note="anticodon binding site; other site"
/db_xref="CDD:238437"
gene complement(167680..169089)
/locus_tag="Cphamn1_0173"
/db_xref="GeneID:6373827"
CDS complement(167680..169089)
/locus_tag="Cphamn1_0173"
/note="TIGRFAM: chlorophyllide reductase subunit Z;
PFAM: oxidoreductase/nitrogenase component 1; protein of
unknown function DUF1197;
KEGG: plt:Plut_0124 chlorophyllide reductase subunit Z"
/codon_start=1
/transl_table=11
/product="chlorophyllide reductase subunit Z"
/protein_id="YP_001958629.1"
/db_xref="GI:189499159"
/db_xref="InterPro:IPR000510"
/db_xref="InterPro:IPR009586"
/db_xref="InterPro:IPR010244"
/db_xref="GeneID:6373827"
/translation="MTKTIRDESTAGAYWGAVNTFCALRDVHVIADAPVGCYNLAGVA
VMDYTDAIPYLENFTPTSLTEKEIASSGSSESVINVIEKLGKTEKQFILVSSAESEMI
GSDHEKMLQLKYPDIRYFASHSLGENEWEGRDRALDWLYQTFDDKKPAEVVPGTVSII
GPTYGCFNSPSDLAELKRLITGCGATLRHVYPFESKLHDISHLKNSDVIITMYREFGQ
TLSKKLGRPVLEAPFGLAETEQFISSLGRLTGNKEKADSFLKQEKSSTLQPIWDLWRG
PQAEWFPTIRFGIAADRTYAEGIKKFLGDEMGMQCLFSHDSAETDNSSLREELATAQP
QFMFGRIVDKIYLAELDAKTRFIPAGFPGPIVRRALGTPFMGHSGAVYLIQEIVNALY
ETLFTFLPITPKTAQVEEPSRNISWTQEANTVLDAIIAKTPFISQISLGRELKKKAEA
LAAKQGKDTVTPDLLQMLK"
misc_feature complement(167860..169083)
/locus_tag="Cphamn1_0173"
/note="The nitrogenase enzyme system catalyzes the
ATP-dependent reduction of dinitrogen to ammonia. This
group contains both alpha and beta subunits of component 1
of the three known genetically distinct types of
nitrogenase systems: a molybdenum-dependent; Region:
Oxidoreductase_nitrogenase; cl02775"
/db_xref="CDD:243174"
misc_feature complement(167695..169080)
/locus_tag="Cphamn1_0173"
/note="chlorophyllide reductase subunit Z; Region: BchZ;
TIGR02014"
/db_xref="CDD:131069"
gene complement(169183..170934)
/locus_tag="Cphamn1_0174"
/db_xref="GeneID:6373828"
CDS complement(169183..170934)
/locus_tag="Cphamn1_0174"
/note="PFAM: glycoside hydrolase family 3 domain protein;
KEGG: cte:CT2124 beta-N-acetylglucosaminidase"
/codon_start=1
/transl_table=11
/product="glycoside hydrolase family 3"
/protein_id="YP_001958630.1"
/db_xref="GI:189499160"
/db_xref="InterPro:IPR001764"
/db_xref="GeneID:6373828"
/translation="MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFRE
KDKWVEKQLSEMTLSDKIGQMLIAHSPAKFRSTDDSYYKKLSLLVSQGKVGGIMFLKG
NTNDAAVLANRFQFIAPRPLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKM
AGVIAQEAKALGIYHSYGPSVDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSN
GIIATAKHFPGHGDVTVDSHINLPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLA
IPAYTGSMTPATLSWRIVTKLLRKELGFDGLIITDALNMKALYQSYTLEDISLRAVEA
GNDLLLFSPDPERTHTTLLNAVRRGKLSEKQINKSVRRILLAKRWLGLDKNRLVNLNS
IHGQMNLKSHRELAENIADNAITVIRDKHQALPVRQENKNNILHIVLENKRYSLSGES
FSDKLYRAFQAKTIRLDHNSSARDYLDAADKAKRASTIIVSTYVEVLSGTKSLAVSKG
QEEFISTLVRDLPSKRSCIMISFGTPYLINQFPDIPAFICTYSSSELSEDSAVRLLQG
KIKPTGKLPISLTENRR"
sig_peptide complement(170851..170934)
/locus_tag="Cphamn1_0174"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.999 at
residue 28"
misc_feature complement(169642..170769)
/locus_tag="Cphamn1_0174"
/note="Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism]; Region: BglX; COG1472"
/db_xref="CDD:224389"
misc_feature complement(169813..170766)
/locus_tag="Cphamn1_0174"
/note="Glycosyl hydrolase family 3 N terminal domain;
Region: Glyco_hydro_3; pfam00933"
/db_xref="CDD:216204"
gene complement(171024..171542)
/locus_tag="Cphamn1_0175"
/db_xref="GeneID:6373829"
CDS complement(171024..171542)
/locus_tag="Cphamn1_0175"
/note="PFAM: HNH endonuclease;
SMART: HNH nuclease;
KEGG: pvi:Cvib_0193 HNH endonuclease"
/codon_start=1
/transl_table=11
/product="HNH endonuclease"
/protein_id="YP_001958631.1"
/db_xref="GI:189499161"
/db_xref="InterPro:IPR002711"
/db_xref="InterPro:IPR003615"
/db_xref="GeneID:6373829"
/translation="MSLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPER
FVCTVSESFPLPSIVRLNVFVRVPYKHIMLTRKNIFRRDNFQCQYCGTCGTPLTIDHM
TPRSQGGEDSWENLVTACGPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVS
EDWKPYLFMASS"
misc_feature complement(171099..171500)
/locus_tag="Cphamn1_0175"
/note="Restriction endonuclease [Defense mechanisms];
Region: McrA; COG1403"
/db_xref="CDD:224321"
misc_feature complement(171159..171326)
/locus_tag="Cphamn1_0175"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:238038"
misc_feature complement(order(171159..171161,171171..171173,
171180..171185,171195..171200,171231..171233,
171237..171245,171249..171251))
/locus_tag="Cphamn1_0175"
/note="active site"
/db_xref="CDD:238038"
gene complement(171776..173238)
/locus_tag="Cphamn1_0176"
/pseudo
/db_xref="GeneID:6373830"
gene complement(173499..174314)
/locus_tag="Cphamn1_0177"
/db_xref="GeneID:6373831"
CDS complement(173499..174314)
/locus_tag="Cphamn1_0177"
/EC_number="3.1.26.3"
/note="PFAM: ribonuclease III; double-stranded RNA binding
domain protein;
KEGG: cte:CT2119 ribonuclease III"
/codon_start=1
/transl_table=11
/product="Ribonuclease III"
/protein_id="YP_001958632.1"
/db_xref="GI:189499162"
/db_xref="InterPro:IPR000999"
/db_xref="InterPro:IPR001159"
/db_xref="InterPro:IPR011907"
/db_xref="GeneID:6373831"
/translation="MEKLWQKLSSLAFNRPQSHEQSETGPTTDRNAPPIPQNTSTWLE
DILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVFPE
SDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALI
GALYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVS
EEGAEHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALEELEARKRSESD"
misc_feature complement(173559..174188)
/locus_tag="Cphamn1_0177"
/note="ribonuclease III, bacterial; Region: RNaseIII;
TIGR02191"
/db_xref="CDD:233772"
misc_feature complement(173760..174152)
/locus_tag="Cphamn1_0177"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:238333"
misc_feature complement(order(173796..173798,173823..173825,
173991..173993,174021..174029,174033..174038,
174045..174050,174057..174059,174066..174071,
174078..174083))
/locus_tag="Cphamn1_0177"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature complement(order(173844..173846,173853..173855,
174060..174062,174072..174074,174081..174083))
/locus_tag="Cphamn1_0177"
/note="active site"
/db_xref="CDD:238333"
misc_feature complement(order(173844..173846,173853..173855,
174072..174074))
/locus_tag="Cphamn1_0177"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature complement(173559..173732)
/locus_tag="Cphamn1_0177"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:238007"
misc_feature complement(order(173562..173564,173571..173582,
173709..173714,173730..173732))
/locus_tag="Cphamn1_0177"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:238007"
gene complement(174339..175583)
/locus_tag="Cphamn1_0178"
/db_xref="GeneID:6373832"
CDS complement(174339..175583)
/locus_tag="Cphamn1_0178"
/note="TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase
2;
PFAM: Beta-ketoacyl synthase;
KEGG: plt:Plut_0129 3-oxoacyl-(acyl-carrier-protein)
synthase II"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-(acyl-carrier-protein) synthase 2"
/protein_id="YP_001958633.1"
/db_xref="GI:189499163"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR017568"
/db_xref="GeneID:6373832"
/translation="MGQERKRIVVTGIGVLSPVGLSKEELKASLYQGKSGAAPITYFD
TNGFSTRFACELKGFKAEDYMDTKSSSRMDPFSQYAVIAAEQALKDSCLDLSSIDPAR
IGVVHGSGTGGMTIHDAQMRVFLERGPRRISPFFIPMLIPDIAAGQISMRNKLMGPNY
ATASACATSLHAIIDAWMLLQLDMADYMVCGGSEAAITPMSVGGFNAARALSTRNDDP
ETASRPYDRDRDGFVMGEGAGSLILETLESAQSRGAKIYGELAGVGASADAHHLTAPH
PEGAGALNAMKSALAQAGITPEAIDYVNTHGTATPLGDLAELKALSKLFGDHAKKISI
SSTKSMTGHLLGAAGVVESIACLLALESQVVPPTINIENLDPEVDLDVTPNTPTERKI
DYVLNNGFGFGGHNATLIFKKI"
misc_feature complement(174348..175568)
/locus_tag="Cphamn1_0178"
/note="beta-ketoacyl-acyl-carrier-protein synthase II;
Region: fabF; TIGR03150"
/db_xref="CDD:200247"
misc_feature complement(174351..175568)
/locus_tag="Cphamn1_0178"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:238430"
misc_feature complement(order(174369..174371,174375..174377,
174732..174734,174774..174788,174960..174965,
174972..174977,175038..175040,175047..175052,
175059..175061,175095..175103,175107..175109,
175113..175115,175131..175133,175143..175145,
175155..175157,175173..175175,175209..175214,
175218..175220,175230..175235,175254..175256))
/locus_tag="Cphamn1_0178"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238430"
misc_feature complement(order(174555..174557,174666..174668,
175086..175088))
/locus_tag="Cphamn1_0178"
/note="active site"
/db_xref="CDD:238430"
gene complement(175632..175868)
/gene="acpP"
/locus_tag="Cphamn1_0179"
/db_xref="GeneID:6373833"
CDS complement(175632..175868)
/gene="acpP"
/locus_tag="Cphamn1_0179"
/note="carries the fatty acid chain in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="acyl carrier protein"
/protein_id="YP_001958634.1"
/db_xref="GI:189499164"
/db_xref="InterPro:IPR003231"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR006163"
/db_xref="GeneID:6373833"
/translation="MSAEIKDKVYDIIVSKMGVNKDQIKPESKFADDLGADSLDTVEL
IMDLENEFDVQIPDEDAEKISTVQQAIDYIVNNK"
misc_feature complement(175635..175862)
/gene="acpP"
/locus_tag="Cphamn1_0179"
/note="acyl carrier protein; Provisional; Region: acpP;
PRK00982"
/db_xref="CDD:179197"
gene complement(175963..176700)
/locus_tag="Cphamn1_0180"
/db_xref="GeneID:6373834"
CDS complement(175963..176700)
/locus_tag="Cphamn1_0180"
/note="TIGRFAM: 3-oxoacyl-(acyl-carrier-protein)
reductase;
PFAM: short-chain dehydrogenase/reductase SDR; KR domain
protein;
KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein)
reductase"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-(acyl-carrier-protein) reductase"
/protein_id="YP_001958635.1"
/db_xref="GI:189499165"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR011284"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:6373834"
/translation="MFKGKTAVITGAARGIGQAIAVNLASKGANIVICDLQTEWLEET
AEAIKKTGGKVTCKELDVTNHDTASAVFQEIASETGSIDILINNAGITRDGLLMRMSE
ADWDAVLAVNLKGTFNCTKAVSRTMMKQRSGAIVNIASIIGIMGNAGQANYGASKAGV
IAFTKSVAKELASRNIRVNAVAPGFITSKMTDALSDDVRDAMLEAIPLKQFGTPENVA
DVVSFLASDQAAYITGEVVNISGGMVM"
sig_peptide complement(176635..176700)
/locus_tag="Cphamn1_0180"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.804) with cleavage site probability 0.792 at
residue 22"
misc_feature complement(175969..176688)
/locus_tag="Cphamn1_0180"
/note="beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs; Region:
BKR_SDR_c; cd05333"
/db_xref="CDD:187594"
misc_feature complement(175969..176682)
/locus_tag="Cphamn1_0180"
/note="3-oxoacyl-(acyl-carrier-protein) reductase; Region:
3oxo_ACP_reduc; TIGR01830"
/db_xref="CDD:233590"
misc_feature complement(order(176131..176139,176143..176145,
176149..176154,176230..176232,176242..176244,
176281..176289,176368..176370,176428..176439,
176515..176523,176593..176598,176653..176664,
176668..176670))
/locus_tag="Cphamn1_0180"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187594"
misc_feature complement(order(175969..175971,175975..176013,
176020..176022,176032..176037,176041..176046,
176053..176055,176062..176073,176077..176085,
176146..176148,176182..176187,176191..176208,
176212..176217,176224..176229,176236..176241,
176248..176271,176317..176319,176326..176331,
176338..176343,176347..176352,176359..176364,
176374..176376,176383..176388,176395..176403,
176407..176418,176494..176496,176620..176622,
176632..176634))
/locus_tag="Cphamn1_0180"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(176191..176196,176200..176208,
176212..176217,176224..176229,176236..176241,
176248..176274,176317..176319,176326..176331,
176338..176340,176347..176352,176359..176364,
176374..176376,176383..176388,176395..176397,
176401..176403,176407..176415))
/locus_tag="Cphamn1_0180"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187594"
misc_feature complement(order(176230..176232,176242..176244,
176281..176283,176365..176367))
/locus_tag="Cphamn1_0180"
/note="active site"
/db_xref="CDD:187594"
gene complement(176731..177642)
/locus_tag="Cphamn1_0181"
/db_xref="GeneID:6373835"
CDS complement(176731..177642)
/locus_tag="Cphamn1_0181"
/note="TIGRFAM: malonyl CoA-acyl carrier protein
transacylase;
PFAM: Acyl transferase;
KEGG: cte:CT2115 malonyl CoA-acyl carrier protein
transacylase"
/codon_start=1
/transl_table=11
/product="malonyl CoA-acyl carrier protein transacylase"
/protein_id="YP_001958636.1"
/db_xref="GI:189499166"
/db_xref="InterPro:IPR004410"
/db_xref="InterPro:IPR014043"
/db_xref="GeneID:6373835"
/translation="MKAFVFPGQGSQYCGMAKEIYDRYPEARSLMDRADEILGYSITD
IMFNGSEDDLRQTRYTQPAIFLHSIAVAKLLGDNQAGMTAGHSLGEYTALCYADAMSF
DDAIHIVAKRGELMQNAGTINPGTMAAVIGMKDTDLENLLAEAETEGIVQAANFNSPG
QVVISGDIDAVRKAVELAPSKGARMAKELVVSGAFHSPLMKPAEEELKASLDAITIND
ARIPVCMNVVAQPVRRKEEIRNNLVLQLTSSVKWQQSVEAMIAEGVTSFVETGPQKVL
QGLIKRIDRSVTIDGVDTADQIAQTLS"
misc_feature complement(176749..177642)
/locus_tag="Cphamn1_0181"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:223408"
misc_feature complement(176788..177642)
/locus_tag="Cphamn1_0181"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:232839"
gene complement(177678..178664)
/locus_tag="Cphamn1_0182"
/db_xref="GeneID:6373836"
CDS complement(177678..178664)
/locus_tag="Cphamn1_0182"
/EC_number="2.3.1.41"
/note="FabH; beta-ketoacyl-acyl carrier protein synthase
III; catalyzes the condensation of acetyl-CoA with
malonyl-ACP to initiate cycles of fatty acid elongation;
differs from 3-oxoacyl-(acyl carrier protein) synthase I
and II in that it utilizes CoA thioesters as primers
rather than acyl-ACPs"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_001958637.1"
/db_xref="GI:189499167"
/db_xref="InterPro:IPR004655"
/db_xref="InterPro:IPR013747"
/db_xref="InterPro:IPR013751"
/db_xref="GeneID:6373836"
/translation="MKAVITSTAKYLPESILSNKDLEKILDTNDEWIRSRTGIGERRI
LKDPDKATSYLCTGVAQRILEKRGITADELDLIIVATMTPDMVFPSTACLVQKNIQAM
NAWAFDLSGACSGFLYALNTGAQFIAAGTHKKVLVIGGEKMSSIMDYTDRTTSVLFGD
GAAGVLLEPGQDEKHGLIDARLYSDGRGGDNLCMPAGGSLRPATHETIDAKLHYLQQD
GPQVFKAAVVAMAEVAAEVMERNRLTSDDIDFLIPHQANNRIIQATAERMHLDQKKVA
KNIEHYGNTSAATIPICLAELDEAGKLHTGSNLILVSFGAGYTWGSIYLKWQ"
misc_feature complement(177681..178664)
/locus_tag="Cphamn1_0182"
/note="3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed; Region: PRK09352"
/db_xref="CDD:236475"
misc_feature complement(177690..178661)
/locus_tag="Cphamn1_0182"
/note="Ketoacyl-acyl carrier protein synthase III (KASIII)
initiates the elongation in type II fatty acid synthase
systems. It is found in bacteria and plants. Elongation of
fatty acids in the type II systems occurs by Claisen
condensation of malonyl-acyl...; Region: KAS_III; cd00830"
/db_xref="CDD:238426"
misc_feature complement(order(177714..177716,178083..178088,
178104..178121,178230..178232,178287..178292,
178299..178304,178311..178313,178335..178355,
178377..178379,178386..178388,178413..178415,
178419..178421))
/locus_tag="Cphamn1_0182"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238426"
misc_feature complement(order(177813..177815,177903..177905,
178326..178328))
/locus_tag="Cphamn1_0182"
/note="active site"
/db_xref="CDD:238426"
misc_feature complement(177894..177896)
/locus_tag="Cphamn1_0182"
/note="CoA binding pocket [chemical binding]; other site"
/db_xref="CDD:238426"
gene complement(178762..179787)
/locus_tag="Cphamn1_0183"
/db_xref="GeneID:6373837"
CDS complement(178762..179787)
/locus_tag="Cphamn1_0183"
/note="involved in acylation of glycerol-3-phosphate to
form 1-acyl-glycerol-3 phosphate for use in phospholipid
biosynthesis; functions with PlsY"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate acyltransferase PlsX"
/protein_id="YP_001958638.1"
/db_xref="GI:189499168"
/db_xref="InterPro:IPR003664"
/db_xref="GeneID:6373837"
/translation="MLTIAVDAMGGDNAPQCVVEGTIQTLRETDNRLEILLIGQEEKV
QPLLDAHDTQGLNLRFMHAPEVITMTDVPAIAVKTKQNSSLVRGLLLCKEKKADGFIS
AGNTGALMAASLFILGRLPGVLRPTIAAYFPRLAPGLTNVVDVGANVDCKAENLVQFA
EMLTIYQRDAADMEKPLTGLLNIGEEDNKGPEVLKQTYRLLKEADRKNKINFAGNIEG
NDILSSKVSIIVCDGLVGNTLLKFGESIPEFLSSIFKPSLKELVVSGKLDPEAAELTG
SAFKKMFKPFDVERFGGVPFLGVDGISIVGHGRSSAKAIMNMIYMAEHMIEKKVNQHI
AEALAVT"
misc_feature complement(178771..179787)
/locus_tag="Cphamn1_0183"
/note="putative phosphate acyltransferase; Provisional;
Region: PRK05331"
/db_xref="CDD:235414"
gene complement(179811..180002)
/gene="rpmF"
/locus_tag="Cphamn1_0184"
/db_xref="GeneID:6373838"
CDS complement(179811..180002)
/gene="rpmF"
/locus_tag="Cphamn1_0184"
/note="some L32 proteins have zinc finger motifs
consisting of CXXC while others do not"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L32"
/protein_id="YP_001958639.1"
/db_xref="GI:189499169"
/db_xref="InterPro:IPR002677"
/db_xref="GeneID:6373838"
/translation="MATPKAKVSKSRRDKRRAQFTARSKAAETVTCPNCGEPTLPHRA
CRHCGHYRGRAVTKKSSNS"
misc_feature complement(179826..180002)
/gene="rpmF"
/locus_tag="Cphamn1_0184"
/note="50S ribosomal protein L32; Reviewed; Region: rpmF;
PRK12286"
/db_xref="CDD:237038"
gene complement(180035..180559)
/locus_tag="Cphamn1_0185"
/db_xref="GeneID:6373839"
CDS complement(180035..180559)
/locus_tag="Cphamn1_0185"
/note="PFAM: protein of unknown function DUF177;
KEGG: cte:CT2111 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958640.1"
/db_xref="GI:189499170"
/db_xref="InterPro:IPR003772"
/db_xref="GeneID:6373839"
/translation="MVTEKGVIGIRIAGLSEGLHEYDFACKASDFKNPELAEPAFCNE
IRVRIAAVRTEREMTVDIETKTVAEFSCDRCLEPLKKELTGKYRILFAFSDTGALSEK
SDENYRALDRNAVTVDLTEDVRETLLLSKPMKVVCADKSACTLYQENSPLNADHESET
ASPWKESLEKLKGK"
misc_feature complement(180044..180382)
/locus_tag="Cphamn1_0185"
/note="Uncharacterized ACR, COG1399; Region: DUF177;
pfam02620"
/db_xref="CDD:217148"
gene 180745..180819
/locus_tag="Cphamn1_R0013"
/note="tRNA-Asn1"
/db_xref="GeneID:6373840"
tRNA 180745..180819
/locus_tag="Cphamn1_R0013"
/product="tRNA-Asn"
/db_xref="GeneID:6373840"
gene complement(181291..182052)
/locus_tag="Cphamn1_0186"
/db_xref="GeneID:6373841"
CDS complement(181291..182052)
/locus_tag="Cphamn1_0186"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958641.1"
/db_xref="GI:189499171"
/db_xref="GeneID:6373841"
/translation="MYEDAQEIFGYLPIRRDTSENDYINHLWQSFLLLEKADRRGDKD
ENGFAVEDKSLFMGRSFAVMPFHLLFMLAIQYKVLRIYKEQKEKYELALTTKNPRNGE
KDILAPESPLAIAFLGESEIVDFLKIAGLSADDARSIKKSIVRYRNDKIAHAKGYIEQ
DIETKITEYFGWLETLQTVYRQMNQNVADLWLSEVEIGDDMEQFLEIHFLDSCFSPRD
FGDIIGTLLEAEQLDFDQWSQVVNKGLEMVRLMKK"
gene complement(182055..182651)
/locus_tag="Cphamn1_0187"
/db_xref="GeneID:6373842"
CDS complement(182055..182651)
/locus_tag="Cphamn1_0187"
/note="KEGG: bte:BTH_I2738 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958642.1"
/db_xref="GI:189499172"
/db_xref="GeneID:6373842"
/translation="MNEIIYILINEAMPGYVKIGRTTNLEQRIRSLDTTSVPLPFECF
YACTVRDANFVEKQLHDAFLDYRVRSSREFFELSPDRVVAALKLAEIENVTPKRDYVE
SKEDQQALNQARTRRAVFNFRMANIPVGAELSYVHDENIKAKVIDNKLIELNGEVTSL
SASAQKLLGYPYQVQGTVYWMFEGETLDERRRRLESEE"
misc_feature complement(182388..182642)
/locus_tag="Cphamn1_0187"
/note="T5orf172 domain; Region: T5orf172; pfam10544"
/db_xref="CDD:220802"
gene complement(182767..185094)
/locus_tag="Cphamn1_0188"
/db_xref="GeneID:6373843"
CDS complement(182767..185094)
/locus_tag="Cphamn1_0188"
/note="PFAM: restriction modification system DNA
specificity domain; RNA methylase; N-6 DNA methylase;
KEGG: mgi:Mflv_0805 N-6 DNA methylase"
/codon_start=1
/transl_table=11
/product="N-6 DNA methylase"
/protein_id="YP_001958643.1"
/db_xref="GI:189499173"
/db_xref="InterPro:IPR000055"
/db_xref="InterPro:IPR000241"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR003356"
/db_xref="GeneID:6373843"
/translation="MNTDTKRHIDSARQVLVGVVPNPTSQIDQITNALIYKFMDDMDQ
AAIKAGGSPSFFVDDLENYAWTRLMDQRIGNQERMNLYSEALIKFSQAKQLPELFRGI
FKSAFLPYRSPETLGLFLKEIDYFDYSHPEELGNAYEYLLSIMSSQGDAGQFRTPRHI
IDFIVDVVNPTKADKVLDPACGTGGFLVSSYKHILEQHDGKDDPKKKEKPLTPDERKK
LMTNFEGYDIDPTMVRIAQVNMYLHQFKNPKIFQYDSLSSEERWNDKFDVILANPPFM
SPKGGIKPHSKFSIPSSRSEVLFVDYIMNHLRPKGRAGIIVPEGIIFQSGTAHKQLRK
NLVEDGLYAVVSLPSGVFAPYSGVKTSILLFNNELAKTSTEILFVKIEQDGFDLGATK
RPISKNDLPTALDILNKWNTGEKVENKLAVYVEKSKIAENGDYNLSGDRYRVATDYTN
AKWPMVELVEVAEILKGSAITKKDTKHGNIPVIAGGQEPAYYHNKSNREGDVITVSAS
GAYAGFVNYFTIPIFASDCSTIQTKDENIVSTRYLFSILKAKQEDIYEFQQGGGQPHV
YPKDLKTIKIPLPPLEIQEQIVAELDGYAGIIAGAKQIAQNWKPKIEIDPEWEKVKLG
EISDRVTKGTTPTTNGFQFQESGINFIKIESIDDGGYFIREKLAHINQECNESLKRSQ
LKENDILFSIAGALGRVASIESSILPANTNQALAIISPKKELDSKYLEQVLRSDLIQN
QIFGLKVGVAQSNLSLAQVSDFEIPLPSLEIKNKS"
misc_feature complement(183769..184695)
/locus_tag="Cphamn1_0188"
/note="N-6 DNA Methylase; Region: N6_Mtase; pfam02384"
/db_xref="CDD:217008"
misc_feature complement(184159..184572)
/locus_tag="Cphamn1_0188"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(184279..184281,184330..184338,
184411..184416,184540..184560))
/locus_tag="Cphamn1_0188"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature complement(183319..183741)
/locus_tag="Cphamn1_0188"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:216490"
misc_feature complement(182773..183699)
/locus_tag="Cphamn1_0188"
/note="Restriction endonuclease S subunits [Defense
mechanisms]; Region: HsdS; COG0732"
/db_xref="CDD:223804"
misc_feature complement(182773..183246)
/locus_tag="Cphamn1_0188"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:216490"
gene complement(185098..187651)
/locus_tag="Cphamn1_0189"
/pseudo
/db_xref="GeneID:6373844"
gene complement(187656..187865)
/locus_tag="Cphamn1_0190"
/db_xref="GeneID:6373845"
CDS complement(187656..187865)
/locus_tag="Cphamn1_0190"
/note="PFAM: helix-turn-helix domain protein;
KEGG: ckl:CKL_2012 hypothetical protein"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_001958644.1"
/db_xref="GI:189499174"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:6373845"
/translation="MSNEKSIISGNIKKYRNKLGISQDVLSKRADLAFHTIAKIEAGA
TPNPTIDTVKKIADALGVSLDVLMK"
misc_feature complement(<187659..187847)
/locus_tag="Cphamn1_0190"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature complement(187665..187835)
/locus_tag="Cphamn1_0190"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(187740..187742,187815..187817,
187827..187829))
/locus_tag="Cphamn1_0190"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature complement(order(187743..187745,187818..187820))
/locus_tag="Cphamn1_0190"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature complement(order(187737..187742,187752..187754,
187761..187763,187794..187799))
/locus_tag="Cphamn1_0190"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 187930..188553
/locus_tag="Cphamn1_0191"
/db_xref="GeneID:6373846"
CDS 187930..188553
/locus_tag="Cphamn1_0191"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958645.1"
/db_xref="GI:189499175"
/db_xref="InterPro:IPR016160"
/db_xref="GeneID:6373846"
/translation="MEFLAFSQTKLGSSLALPANGLGGSRATSFLVAHFALQNTASNP
AEKNRAPLSSGINSAEKQKGKKEGGWGEGIFALLLLRIERFRFSLIKRKPKQKIFHLL
LKEKNAREKIKKCREKFSVLFCRSGAEASGNAPHYYSGFSLKKVRISFRVRSKSKKQE
YRKCCCFFDFISEIASFACRSFHQKKQVLCRERIRFYISFLLAILSG"
gene 188593..189657
/locus_tag="Cphamn1_0192"
/db_xref="GeneID:6373847"
CDS 188593..189657
/locus_tag="Cphamn1_0192"
/note="PFAM: protein of unknown function DUF306 Meta and
HslJ;
KEGG: yen:YE3259 lipoprotein involved with copper
homeostasis and adhesion"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958646.1"
/db_xref="GI:189499176"
/db_xref="InterPro:IPR005184"
/db_xref="GeneID:6373847"
/translation="MRYATAVLSIVLLFAMAGCQGNYTKPDVPPSAGVYGKNITYAGA
IPCAECTLQKLTVTLFDDGTFRLKRVSVGVQGGGTKVEYDLGRWNRKSGRLVLNNGEK
WPLQFRYISGNEIRLLDQRGNEIVSNLDYSLRKTSFVDFLSGPLTMNGMFLYMADAYT
FRECRTGKNYPLVFATPNSSIEKQYLALRSGPGKPLLAKLSGRFSIRRPEPGAASREH
IIVQDFKRFLPRGTCRNPGSPAAALYGIYWKVTAISGSSDLLKVSGKVPNLVLSTYGN
SVKGYTGCNSLMGSYKHSGSGLSFSKLSTTRMACPGSSGQIEKAFLAALRKTTGWKIS
GKTLELFDSRKRLLMRLKAG"
sig_peptide 188593..188658
/locus_tag="Cphamn1_0192"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.948) with cleavage site probability 0.481 at
residue 22"
misc_feature 188608..189300
/locus_tag="Cphamn1_0192"
/note="lipoprotein involved with copper homeostasis and
adhesion; Provisional; Region: PRK10523"
/db_xref="CDD:236708"
misc_feature 188713..188973
/locus_tag="Cphamn1_0192"
/note="NlpE N-terminal domain; Region: NlpE; pfam04170"
/db_xref="CDD:190894"
misc_feature 189316..189618
/locus_tag="Cphamn1_0192"
/note="META domain; Region: META; pfam03724"
/db_xref="CDD:217695"
gene 190041..191720
/locus_tag="Cphamn1_0193"
/db_xref="GeneID:6373848"
CDS 190041..191720
/locus_tag="Cphamn1_0193"
/note="TIGRFAM: 2-isopropylmalate synthase;
PFAM: pyruvate carboxyltransferase; LeuA allosteric
(dimerisation) domain;
KEGG: cte:CT2107 2-isopropylmalate synthase"
/codon_start=1
/transl_table=11
/product="2-isopropylmalate synthase"
/protein_id="YP_001958647.1"
/db_xref="GI:189499177"
/db_xref="InterPro:IPR000891"
/db_xref="InterPro:IPR002034"
/db_xref="InterPro:IPR005668"
/db_xref="InterPro:IPR013709"
/db_xref="GeneID:6373848"
/translation="MATMNYAKYEAYPAVDIEGRTWPDKRITKAPHWCSIDLRDGNQA
LPVPMSVEEKVEMFRLLVDIGFKEIEVGFPSAAAVEFQFVRRLIEENLIPEDVTIQVL
TQAREHLIRKTFDALEGVGNAIVHLYNSTSTVQRDVVFRMGRDEIKRIAMDGTRLVRE
LKEASGNEGIRFQYSPESFTGTEVDYALEVTHAVMDEWGASENDPIIINLPSTVEMST
PNIFADRIEWFCRNIRERKAVIISVHTHNDRGTAVAAAELAVMAGADRVEGALFGNGE
RCGNLDIVTMALNLCTQGVDPELDFTNLAHISDVYRKNTRMSIHPRQPYSGELVYTAF
SGSHQDAINKGMKAIRASGNNCWNVPYLPIDPRDVGCSYKAIVRINSQSGKGGVAYIM
ENDFGYEIPKWMQPHFGSAVQSKVDTTGRELLPEEIRELFHEEYIRMHDPYLMKKCTI
KWEDQDPERDDEVSTTLSCILQHNDTERSFTANGNGPVDAFVRGMMQQTGLVFSVDEY
AEHSIGHTADAKALAYIRIKEEGGRESIGAGIDSNISLASIKAVLSAVNRL"
misc_feature 190041..191717
/locus_tag="Cphamn1_0193"
/note="2-isopropylmalate synthase; Validated; Region:
PRK03739"
/db_xref="CDD:235154"
misc_feature 190128..190973
/locus_tag="Cphamn1_0193"
/note="Mycobacterium tuberculosis LeuA3 and related
proteins, N-terminal catalytic TIM barrel domain; Region:
DRE_TIM_LeuA; cd07942"
/db_xref="CDD:163680"
misc_feature order(190155..190160,190248..190250,190569..190571,
190671..190673,190677..190679,190770..190772,
190776..190778)
/locus_tag="Cphamn1_0193"
/note="active site"
/db_xref="CDD:163680"
misc_feature order(190155..190160,190248..190250)
/locus_tag="Cphamn1_0193"
/note="catalytic residues [active]"
/db_xref="CDD:163680"
misc_feature order(190158..190160,190770..190772,190776..190778)
/locus_tag="Cphamn1_0193"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163680"
misc_feature 191304..191717
/locus_tag="Cphamn1_0193"
/note="LeuA allosteric (dimerisation) domain; Region:
LeuA_dimer; smart00917"
/db_xref="CDD:214910"
gene 192015..192473
/locus_tag="Cphamn1_0194"
/db_xref="GeneID:6373849"
CDS 192015..192473
/locus_tag="Cphamn1_0194"
/note="PFAM: ferric-uptake regulator;
KEGG: gur:Gura_0045 ferric uptake regulator, Fur family"
/codon_start=1
/transl_table=11
/product="Fur family ferric uptake regulator"
/protein_id="YP_001958648.1"
/db_xref="GI:189499178"
/db_xref="InterPro:IPR002481"
/db_xref="GeneID:6373849"
/translation="MEEHLEKLRASGRKVTPRRKAIIQLFLQEQGDLSPQDVQEALSG
TTGQFGLPGIYRNLEILTTCGILFRVVTYGGERRYALCKAGHGEGHHHHIVCIACRKV
GKVSDCLYKDGMMVEGFRLVSHIVQLNGLCESCAREKNDLSALQELRQQG"
misc_feature 192063..192410
/locus_tag="Cphamn1_0194"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(192108..192110,192252..192254,192285..192287,
192291..192293,192324..192326)
/locus_tag="Cphamn1_0194"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 192162..192206
/locus_tag="Cphamn1_0194"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(192282..192284,192288..192290,192384..192386)
/locus_tag="Cphamn1_0194"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(192297..192305,192339..192344,192369..192377,
192381..192407)
/locus_tag="Cphamn1_0194"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(192300..192302,192309..192311,192408..192410)
/locus_tag="Cphamn1_0194"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 192470..193348
/locus_tag="Cphamn1_0195"
/db_xref="GeneID:6373850"
CDS 192470..193348
/locus_tag="Cphamn1_0195"
/note="PFAM: periplasmic solute binding protein;
KEGG: cte:CT2106 adhesion protein"
/codon_start=1
/transl_table=11
/product="periplasmic solute binding protein"
/protein_id="YP_001958649.1"
/db_xref="GI:189499179"
/db_xref="InterPro:IPR006127"
/db_xref="InterPro:IPR006128"
/db_xref="InterPro:IPR006129"
/db_xref="GeneID:6373850"
/translation="MILLFSLCYSSLFAAAPSSDAVTGAAENIRVVTSIEPLSFFVKR
VGGDRVHVAVMVPPGANPHSYEPRPAQMAETAKAHLFVKAGSGIEFELAWMNKLIALR
STMTVCNASQDVGLREMSERNHGHTHEHSRSDPHFWLSPDNAILIARNVERSLVALDP
VHADEYAENLRKLEAQLISLKREITRKLSGIKNRSFMVFHPAWGYYAAAFNLKQIAAE
EEGKELTPKKMQSVIRQARAEGVRVVFVSPTFSTLQAETIAREIGGVTRPVDPLSGEY
IANLRQATGAFVESMR"
sig_peptide 192470..192535
/locus_tag="Cphamn1_0195"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.970 at
residue 22"
misc_feature 192551..193333
/locus_tag="Cphamn1_0195"
/note="Metal binding protein ZntC. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding...; Region:
ZntC; cd01018"
/db_xref="CDD:238500"
misc_feature 192560..193342
/locus_tag="Cphamn1_0195"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:216419"
misc_feature order(192656..192658,192875..192877,193067..193069,
193277..193279)
/locus_tag="Cphamn1_0195"
/note="putative metal binding residues [ion binding];
other site"
/db_xref="CDD:238500"
gene 193345..194076
/locus_tag="Cphamn1_0196"
/db_xref="GeneID:6373851"
CDS 193345..194076
/locus_tag="Cphamn1_0196"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: cte:CT2105 ABC transporter, ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001958650.1"
/db_xref="GI:189499180"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:6373851"
/translation="MNREIVAIDNLSVIINGAKILDKLSLSVVEGEFLGVVGPNGGGK
TTLLKVILGLLPPASGTVRIFGKSPRLSRKRIGYVPQRLFFDRDFPVTVNDTVLMGRL
SSRGLFARYGKEDTMMVEQALETVGMAGLKKHLVGELSGGEIQRMLLARAMVGQPELL
LLDEPTASIDPEMKTTIYDLLDRLHASVTLIMVSHDTGAISRHVSRTVCLSCGMVTHG
PGEITREELSGMYRYPVNVVKHKHP"
misc_feature 193345..194064
/locus_tag="Cphamn1_0196"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:224046"
misc_feature 193366..193998
/locus_tag="Cphamn1_0196"
/note="ATP-binding cassette domain of the metal-type
transporters; Region: ABC_Metallic_Cations; cd03235"
/db_xref="CDD:213202"
gene 194114..194923
/locus_tag="Cphamn1_0197"
/db_xref="GeneID:6373852"
CDS 194114..194923
/locus_tag="Cphamn1_0197"
/note="PFAM: ABC-3 protein;
KEGG: plt:Plut_0141 ABC 3 transport family protein"
/codon_start=1
/transl_table=11
/product="ABC-3 protein"
/protein_id="YP_001958651.1"
/db_xref="GI:189499181"
/db_xref="InterPro:IPR001626"
/db_xref="GeneID:6373852"
/translation="MVEILQYEFMQNAVAAALLASLACGIIGTYVVVKKIGFISGGIA
HAAFGGIGIAYYLGVNPLLGLLPFSLFSALGIGLLSKKANVGEDTAIGAFWATGMATG
VLFIGLTPGYAPNLFSFLFGNILTVPVPDLQMIAFLDVVIVAVVFALFKEFLAVSFDE
EYAEASGVNAFILYLILLCLIALTVVVLVRVVGIVMVIALLTIPSAIARYFSRSIVLM
MLISCSLCVLFTLSGLWFSYVFDTASGAMIIFVAALSFMVVSGVKTRMAGA"
misc_feature 194114..194908
/locus_tag="Cphamn1_0197"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:224033"
misc_feature <194354..194890
/locus_tag="Cphamn1_0197"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(194372..194374,194378..194383,194390..194395,
194402..194407,194414..194416,194423..194428,
194462..194467,194474..194476,194705..194707,
194849..194851,194858..194863,194870..194872,
194879..194884)
/locus_tag="Cphamn1_0197"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(194504..194506,194681..194683,194693..194695,
194825..194827,194840..194842)
/locus_tag="Cphamn1_0197"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature order(194552..194557,194561..194569,194573..194578,
194582..194599,194603..194611,194735..194737,
194756..194758)
/locus_tag="Cphamn1_0197"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
gene 195035..196372
/locus_tag="Cphamn1_0198"
/db_xref="GeneID:6373853"
CDS 195035..196372
/locus_tag="Cphamn1_0198"
/note="KEGG: plt:Plut_1311 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958652.1"
/db_xref="GI:189499182"
/db_xref="GeneID:6373853"
/translation="MKYPDRSLTILDEKEQGFALPIQEYSIPDIDISLQPIRSFKDLF
RLKALTRVIRSPIVKNIFSARVINLRSIESLKNARRSLEDVYNRDYETNIIYIDDLHS
INVDLSYEIRELKKDTYYLEHGEDDFIDYISRLYNMFDQHVIKGLNFLDSLQFNCFVT
DRDGTTNNYCGHYRSSIQPVYNAVFLSRFASLCTENPIFITSAPLKNFGILDVSVNSD
NVFIYAASKGREFLDFDLVEHRAYIDPVKQARLDQLNLRIGELEHKHEFEKFFYVGSG
LQLKFGQLTIARQDVKCSIPEDESMELLRSVSDIVRELDPDGSVFRVNDTGRDIEIIL
TVDGENGVKDFDKGDGLKYIDSRLGLDLGRGPHLVCGDTASDIPMLKTVLEYTDDVYA
IFVTRDAELAKKVVSICPNTLIVPSPDILLTILGINALTRKRQKGRKAPGIFI"
gene 196515..196739
/locus_tag="Cphamn1_0199"
/db_xref="GeneID:6373854"
CDS 196515..196739
/locus_tag="Cphamn1_0199"
/note="KEGG: plt:Plut_2041 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958653.1"
/db_xref="GI:189499183"
/db_xref="GeneID:6373854"
/translation="MKPIVYFIGAGISILLSIYIFIFGTAANHHLIAVFIGLWAPTII
GIGIFNTLLGIHDEMCCAHRRIEDRQAKDE"
gene 196786..197172
/locus_tag="Cphamn1_0200"
/db_xref="GeneID:6373855"
CDS 196786..197172
/locus_tag="Cphamn1_0200"
/note="may be involved in chromosome condensation;
overexpression in Escherichia coli protects against
decondensation by camphor; overexpressing the protein
results in an increase in supercoiling"
/codon_start=1
/transl_table=11
/product="camphor resistance protein CrcB"
/protein_id="YP_001958654.1"
/db_xref="GI:189499184"
/db_xref="InterPro:IPR003691"
/db_xref="GeneID:6373855"
/translation="MPERYAALLLVGAGGFVGATARFLVALVLPFIGTGFPFGTLAVN
LAGCFLIGFISQLSVSSSLVSPELRLLLATGFCGGFTTFSSYMYEIMSLLRDGEIFYS
TLYLLGSIVGGILCLYFGMQLAKLWA"
sig_peptide 196786..196866
/locus_tag="Cphamn1_0200"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.864) with cleavage site probability 0.497 at
residue 27"
misc_feature 196843..197169
/locus_tag="Cphamn1_0200"
/note="camphor resistance protein CrcB; Provisional;
Region: PRK14202"
/db_xref="CDD:172690"
gene 197348..197689
/locus_tag="Cphamn1_0201"
/db_xref="GeneID:6373856"
CDS 197348..197689
/locus_tag="Cphamn1_0201"
/note="PFAM: protein of unknown function DUF190;
KEGG: cte:CT2101 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958655.1"
/db_xref="GI:189499185"
/db_xref="InterPro:IPR003793"
/db_xref="GeneID:6373856"
/translation="MEFENRQLLRIYVSEQAKYHHRPFYEVVIARAKEFGIPGATVFK
GILSYGMSGQVHTAKILELSQNLPMVIEIMDDQERIAGFLLSIEALAEESGTHVHLAL
EEVLSAVIRSE"
misc_feature 197348..>197599
/locus_tag="Cphamn1_0201"
/note="PII-like signaling protein [Signal transduction
mechanisms]; Region: COG1993"
/db_xref="CDD:224904"
gene complement(197802..199097)
/locus_tag="Cphamn1_0202"
/db_xref="GeneID:6373857"
CDS complement(197802..199097)
/locus_tag="Cphamn1_0202"
/note="Converts (S)-4-amino-5-oxopentanoate to
5-aminolevulinate during the porphyrin biosynthesis
pathway"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_001958656.1"
/db_xref="GI:189499186"
/db_xref="InterPro:IPR004639"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:6373857"
/translation="MPQLTRSAELFEKAKQFIPGGVNSPVRAFKSVGGTPIFMAKGQG
AYMTDVDGNTYLDYVGSWGPFILGSMHPRITAAIENTLTKIGTSFGTPIEMEIEIAEL
LTQIVPSIEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSG
ALTLGAPDSPGVTKGTANDTLNAKYNDIESVRVLVKENKDSIAAIIIEPVAGNTGVIP
AKTDFLQALRDLCTEEGIVLIFDEVMCGFRVALGGAQERYGITPDLTTMGKIIGGGLP
VGAFGGKREIMQRVAPIGDVYQAGTLSGNPLALTAGLETLKILRDDNPYPELERKAAF
LEEGFRDNMNKLGLSYVQNRVGSMACLFFTETPVENYDTAITCDLKKYGKYYHSMLDQ
GIYLAPSQFEAMFTSAVMTDEDLEKTVKANYVALQAAEA"
misc_feature complement(197811..199088)
/locus_tag="Cphamn1_0202"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:234607"
misc_feature complement(197835..199070)
/locus_tag="Cphamn1_0202"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(order(198291..198293,198366..198371,
198375..198377,198474..198476,198651..198653,
198657..198662,198738..198746))
/locus_tag="Cphamn1_0202"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(198291..198293,198366..198368,
198375..198377,198474..198476,198657..198662,
198738..198743))
/locus_tag="Cphamn1_0202"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(198291..198293)
/locus_tag="Cphamn1_0202"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(199271..200056)
/locus_tag="Cphamn1_0203"
/db_xref="GeneID:6373858"
CDS complement(199271..200056)
/locus_tag="Cphamn1_0203"
/note="TIGRFAM: DNA repair protein RecO;
PFAM: Recombination protein O RecO;
KEGG: pvi:Cvib_1680 DNA repair protein RecO"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_001958657.1"
/db_xref="GI:189499187"
/db_xref="InterPro:IPR003717"
/db_xref="GeneID:6373858"
/translation="MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKS
RLSGLFCTGSLLEVVLYNRSNRDLQLVSEARIIRSPMTAEPSMERFSAIYRLIEILKI
STGNEEKNIRLFNALERTLEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGK
SILPMLQEGSADDLCLTYDPGGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSI
DEIDIPADNSRLLCDILQNYCSLHNNYNPSSKNRRIISRILYE"
misc_feature complement(199343..200056)
/locus_tag="Cphamn1_0203"
/note="DNA repair protein RecO; Reviewed; Region: recO;
PRK00085"
/db_xref="CDD:234622"
misc_feature complement(199817..200053)
/locus_tag="Cphamn1_0203"
/note="Recombination protein O N terminal; Region: RecO_N;
pfam11967"
/db_xref="CDD:221346"
misc_feature complement(199331..199801)
/locus_tag="Cphamn1_0203"
/note="Recombination protein O C terminal; Region: RecO_C;
pfam02565"
/db_xref="CDD:217107"
gene 200186..200431
/locus_tag="Cphamn1_0204"
/db_xref="GeneID:6373859"
CDS 200186..200431
/locus_tag="Cphamn1_0204"
/note="TIGRFAM: regulatory protein, FmdB family;
PFAM: regulatory protein FmdB;
KEGG: plt:Plut_2036 hypothetical protein"
/codon_start=1
/transl_table=11
/product="FmdB family regulatory protein"
/protein_id="YP_001958658.1"
/db_xref="GI:189499188"
/db_xref="InterPro:IPR013429"
/db_xref="GeneID:6373859"
/translation="MPTYQYRCKQCGHEMEAFQKMSDDALTTCPECKTEELERVISAE
GGFVLKGSGFYNTDYKPKSSCEDSSSACASGKCPLAK"
misc_feature 200186..200344
/locus_tag="Cphamn1_0204"
/note="putative regulatory protein, FmdB family; Region:
CxxC_CxxC_SSSS; TIGR02605"
/db_xref="CDD:213729"
gene complement(200511..201440)
/locus_tag="Cphamn1_0205"
/db_xref="GeneID:6373860"
CDS complement(200511..201440)
/locus_tag="Cphamn1_0205"
/note="KEGG: cte:CT2096 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958659.1"
/db_xref="GI:189499189"
/db_xref="GeneID:6373860"
/translation="MMKGITILVRILLLLILFQAYDALSGLNHNTACAEKMKIILQQA
DRLQGGEKRSPTGNIEPVRSVSGNVVFIHENMLLNCDKATEFLESSIVELEGNIFMTD
RELEIYCDKALYYTKTGIAKLSGNVHGRLLENNLTARSKRALIDNPGNQLWLFDDAAA
WQAERQLTGDTILVQLKEIGEKKKAESVKISGNAFFAARDTLDTTRQLYNQISGKTIF
IKLSEEEKVTGIEVDSQARSLYHAYDNQESPAGVNYSSGNTILMSFREGALNRIAVNG
NVEGKQYPNKLRGSSSINLPGFRLRYNDRPEFR"
misc_feature complement(<201021..201335)
/locus_tag="Cphamn1_0205"
/note="OstA-like protein; Region: OstA_2; pfam13100"
/db_xref="CDD:205281"
gene 201499..202605
/locus_tag="Cphamn1_0206"
/db_xref="GeneID:6373861"
CDS 201499..202605
/locus_tag="Cphamn1_0206"
/EC_number="5.1.3.14"
/note="PFAM: UDP-N-acetylglucosamine 2-epimerase;
KEGG: cte:CT2095 UDP-N-acetylglucosamine 2-epimerase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine 2-epimerase"
/protein_id="YP_001958660.1"
/db_xref="GI:189499190"
/db_xref="InterPro:IPR003331"
/db_xref="GeneID:6373861"
/translation="MKKILLAAGDRQGLLKVLPLYNALQEYNGFEPVLAAGVPLPEGE
QSGENLADLFGIADKVIPVETSGDTPVGRTASAMKAFESLLLAEQPDLAVVGGDDDVA
LAAALAAAKLSLPVATVGAGMRDYNRRSPAEINRKLIDSVSDILFVSEHSGEYNLINE
GFDEERVFFVGEVAIDSLAAVISRANDSAVVDDSGVETKKYVLVLLDRAAALDDLEIL
KKIERLVIVLAGKQQVLMLLDPEVAAVLKQHEMEPAFTMVSGVRVRPSTGYVELLRLV
KDASFILTDSSAVQTESTVMKVPCLTMLDETPSPATIEIGTNILVGDREEDILQSIDE
AARGEIGKHARIPEKWDGTASQRIVDVLEKLLSV"
misc_feature 201505..202587
/locus_tag="Cphamn1_0206"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature order(201529..201531,202297..202299,202303..202305,
202312..202314,202360..202362,202372..202374)
/locus_tag="Cphamn1_0206"
/note="active site"
/db_xref="CDD:99962"
misc_feature 201562..202587
/locus_tag="Cphamn1_0206"
/note="UDP-N-acetylglucosamine 2-epimerase; Region:
Epimerase_2; pfam02350"
/db_xref="CDD:216986"
misc_feature order(201712..201714,201718..201723,201742..201744,
201826..201831,201835..201837,201841..201843,
201892..201894,201904..201906,201973..201975)
/locus_tag="Cphamn1_0206"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 202667..203389
/locus_tag="Cphamn1_0207"
/db_xref="GeneID:6373862"
CDS 202667..203389
/locus_tag="Cphamn1_0207"
/note="KEGG: mba:Mbar_A3002 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958661.1"
/db_xref="GI:189499191"
/db_xref="GeneID:6373862"
/translation="MRLKEIVPWGRSFREYRDMFLLTDDDLQKTILGCGDGPAAFNAE
LTQAGGTVVSVDPVYRFTVDQIRSRVGEVYPEIMSEVLKNPDDYLWDSIRDVRHLAQV
RMDAMEQFFDDCEQGKKAGRYINASLPQLPFKDSAFDLALCSHYLFLYSDHVSLEQHI
SSMKELCRVAYEVRIYPLVTLAGKRSPHLDPVVSELRNDGFEVSFHKAKYRFQRGAEE
MVVVRRIGLEQRRTCTSYPAIV"
misc_feature <203018..203173
/locus_tag="Cphamn1_0207"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl17173"
/db_xref="CDD:247727"
gene 203498..204499
/locus_tag="Cphamn1_0208"
/db_xref="GeneID:6373863"
CDS 203498..204499
/locus_tag="Cphamn1_0208"
/note="PFAM: Radical SAM domain protein;
KEGG: dol:Dole_3188 radical SAM domain protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001958662.1"
/db_xref="GI:189499192"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6373863"
/translation="MRVEELLKKRRSGGVLSREELVFLLGLPLDSAETYMIMAEANRL
SKEHSDGKAEVHAQFALNLAPCSCDCLFCSFAKINDVFHEATELSVEQAVSYARQFEV
DGANAVFMMSTAGYPFERFIEVAGEIRRNLNPETTLVANVGDQTLKNAKRLKDAGFAG
VYHALRLREGTDSTLSPEKRKESIRNFQEAGLEVGTCVEPVGPEHTNEELAEMIAFTA
SFDPSFSGAARRIPIPGTAMAKRGVISELRMAQIVAVTRLGMPDSVMGNCTHEPCTLG
AIAGANLFWAEVGANPRDIEEKTEEGRGGTVSDCRSIFRESNWDVLDGPSRFYNRKR"
misc_feature 203693..204217
/locus_tag="Cphamn1_0208"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(203693..203695,203699..203701,203705..203707,
203711..203719,203834..203836,203840..203845,
203912..203920,203987..203989,204092..204094,
204182..204187)
/locus_tag="Cphamn1_0208"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 203693..204145
/locus_tag="Cphamn1_0208"
/note="Radical SAM superfamily; Region: Radical_SAM;
pfam04055"
/db_xref="CDD:217866"
misc_feature 204188..>204292
/locus_tag="Cphamn1_0208"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; cl06149"
/db_xref="CDD:244315"
gene 204676..204798
/locus_tag="Cphamn1_0209"
/db_xref="GeneID:6373864"
CDS 204676..204798
/locus_tag="Cphamn1_0209"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958663.1"
/db_xref="GI:189499193"
/db_xref="GeneID:6373864"
/translation="MLHHLSWRCYVRKIAVDNEFIEIYDCIANGASRNPENVYD"
gene 204955..205758
/locus_tag="Cphamn1_0210"
/db_xref="GeneID:6373865"
CDS 204955..205758
/locus_tag="Cphamn1_0210"
/note="KEGG: rba:RB6865 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958664.1"
/db_xref="GI:189499194"
/db_xref="GeneID:6373865"
/translation="METSHGFADPSIGKTYRRLRFLAGAALVGMPLLTALSGFFSGHS
LQDSLSDYYFVVKDGGVPRTLFIMFLAFLGGVLFSYRGLDENDNRIHNLAGLFAFGVA
LFPMPCSVSDHPYCQPALLPVLHLPSAGLLYLSAVASVVYGGGPKLKEVLNSFPDSQT
WLKRLRRIKIIPLVLMTIGIVTFLFHKPFIGYFPGISWIFWIEYLGFLGFGIYWVRLM
LLINAANSEGRHLQALRTEKAQKEEPAAPPALRKAVKPAPQIEQWSDIP"
gene 206045..207199
/locus_tag="Cphamn1_0211"
/db_xref="GeneID:6373866"
CDS 206045..207199
/locus_tag="Cphamn1_0211"
/note="PFAM: integrase family protein;
KEGG: spc:Sputcn32_4000 phage integrase family protein"
/codon_start=1
/transl_table=11
/product="integrase family protein"
/protein_id="YP_001958665.1"
/db_xref="GI:189499195"
/db_xref="InterPro:IPR002104"
/db_xref="GeneID:6373866"
/translation="MDVSSVHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYE
YLNLYLDDKPRTAAEKEHNKNILELAKSIKAKRELEIKNGQYGFDSCVKAKALFLSYF
KAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATT
RTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQ
AMAKAECRNPTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQY
HDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTF
AVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELSL"
misc_feature 206060..206509
/locus_tag="Cphamn1_0211"
/note="Protein of unknown function (DUF3946); Region:
DUF3946; pfam13102"
/db_xref="CDD:221923"
misc_feature 206336..207169
/locus_tag="Cphamn1_0211"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature 206351..207184
/locus_tag="Cphamn1_0211"
/note="Integrase [DNA replication, recombination, and
repair]; Region: XerC; COG0582"
/db_xref="CDD:223655"
misc_feature order(206771..206776,206852..206854,207020..207028,
207131..207133)
/locus_tag="Cphamn1_0211"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature order(206771..206773,206852..206854,207026..207028,
207035..207037,207104..207106,207131..207133)
/locus_tag="Cphamn1_0211"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature order(206771..206773,207026..207028,207035..207037,
207104..207106,207131..207133)
/locus_tag="Cphamn1_0211"
/note="active site"
/db_xref="CDD:238231"
gene 207196..207885
/locus_tag="Cphamn1_0212"
/db_xref="GeneID:6373867"
CDS 207196..207885
/locus_tag="Cphamn1_0212"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958666.1"
/db_xref="GI:189499196"
/db_xref="GeneID:6373867"
/translation="MTNLSGSVLAAELALRLQTNTNIYIMYKLFLILVLALGLTAPVY
AGNEIVRKVDDFSNLEIVTFKKQLKFERTKGVSIGTAWLTPEAARTQDGTVDSIRLKL
IVKCNQTGMITRDPVRASQATGGTLKLKLDESVIELGAINQLSEVDFENSVIQGAYIA
DYTEQAIFSLSIEQLQAISAASTVKARVTGMNDLYYDLPHKHYKIHQDWLPEMRKFYN
AVFNAAPTQTE"
sig_peptide 207196..207333
/locus_tag="Cphamn1_0212"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.915) with cleavage site probability 0.911 at
residue 46"
gene 207888..208421
/locus_tag="Cphamn1_0213"
/db_xref="GeneID:6373868"
CDS 207888..208421
/locus_tag="Cphamn1_0213"
/note="KEGG: son:SO_4046 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958667.1"
/db_xref="GI:189499197"
/db_xref="GeneID:6373868"
/translation="MMVIRTLLALVFVFQSIFAVAGPISDTFSDSVFGVKWTDDVETV
KRKFPGGKIKDNAGISVYEVKDGREVLKTRRAKKDKITFTFDAVGKLNGIGIEFPYEG
IESFSSLLNKMTTYFGTYDNDDENTSEFGMNIVWPTDNHITLTLAIVPKILGGFDIIM
GIGRVVPVEASKNELGF"
sig_peptide 207888..207953
/locus_tag="Cphamn1_0213"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.993) with cleavage site probability 0.932 at
residue 22"
gene 208476..209330
/locus_tag="Cphamn1_0214"
/db_xref="GeneID:6373869"
CDS 208476..209330
/locus_tag="Cphamn1_0214"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958668.1"
/db_xref="GI:189499198"
/db_xref="GeneID:6373869"
/translation="MGEKMRLTESVRMVWRDAALFIAQAMREEVAETGSKRVEERADE
VEAFAEGLIPPFDGKVIREGTGWTDERILSVLRDSGRVQTSLLQGLMARADSEKWDKW
EKSESLEAEEQRRMSKGRIKPPDQQFIMYKATNLLRDLLDNEAAPKQYIIWRDTTEHL
EELAEKLRTEGFIDDANIFTGQFQCAGIRAAKKLCQWLDDSALLVYLFDRLKQENLIN
KKNYRDKLLTNRFQDEKGKPVENIRQMRNSYRNNSKTLNGEPNIKNNGVPFDAEKIER
IFEFILAK"
gene 209445..209741
/locus_tag="Cphamn1_0215"
/db_xref="GeneID:6373870"
CDS 209445..209741
/locus_tag="Cphamn1_0215"
/note="KEGG: pdi:BDI_2985 excisionase"
/codon_start=1
/transl_table=11
/product="excisionase"
/protein_id="YP_001958669.1"
/db_xref="GI:189499199"
/db_xref="GeneID:6373870"
/translation="MGLPELDQINNRLQRIESLLVLNKTVLNMKEAALLTGLSLSHLY
KLTCTPGAIPCYKPSGKALYFHREELEAWLLRGRKATAEEIEAAAFTHIAMKGR"
misc_feature 209520..209678
/locus_tag="Cphamn1_0215"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
gene 209745..209909
/locus_tag="Cphamn1_0216"
/db_xref="GeneID:6373871"
CDS 209745..209909
/locus_tag="Cphamn1_0216"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958670.1"
/db_xref="GI:189499200"
/db_xref="GeneID:6373871"
/translation="MTRKSKSLTGREVRLKKEFDADGRDQREQPQDNQPADNSQTFDQ
ISKFMGELGL"
gene 209906..211366
/locus_tag="Cphamn1_0217"
/db_xref="GeneID:6373872"
CDS 209906..211366
/locus_tag="Cphamn1_0217"
/note="TIGRFAM: phage/plasmid primase, P4 family;
PFAM: primase P4;
KEGG: fps:FP0387 hypothetical protein"
/codon_start=1
/transl_table=11
/product="P4 family phage/plasmid primase"
/protein_id="YP_001958671.1"
/db_xref="GI:189499201"
/db_xref="InterPro:IPR006500"
/db_xref="InterPro:IPR014015"
/db_xref="InterPro:IPR014818"
/db_xref="GeneID:6373872"
/translation="MSSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQI
EPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNWGLCKRNGAVYVFTGSHWRRVED
DDMEAFLGTAALRTGVPRYRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGT
FEITQHGQQLREFRRADFLTHVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVG
YVFIRGLKLEKALMLYGGGANGKSVFFDILLALLGSDNASSYSLASLTDSRNTYYRAM
LADKLVNYASEINSKVEASIFKQLVSGEPVEARLPYGKPFILKEYAKLIFNANELPRD
VEHTNAYFRRFLIIPFTVTIPEREQDKELAGKIIASELPGVFNWALEGLRRLLQQKNL
SNCDAARHAVDQYKRESDSVQMFVDGRALEPSGVGFETLGDLYKDYKSFCADDGYRGL
NKRNFSKRLEACGFEKVKRGIGWGFGCSRRADEEPF"
misc_feature 210134..210520
/locus_tag="Cphamn1_0217"
/note="D5 N terminal like; Region: D5_N; pfam08706"
/db_xref="CDD:219981"
misc_feature 210362..211270
/locus_tag="Cphamn1_0217"
/note="phage/plasmid primase, P4 family, C-terminal
domain; Region: primase_Cterm; TIGR01613"
/db_xref="CDD:130674"
gene 211422..212324
/locus_tag="Cphamn1_0218"
/pseudo
/db_xref="GeneID:6373873"
gene 212696..212881
/locus_tag="Cphamn1_0219"
/db_xref="GeneID:6373874"
CDS 212696..212881
/locus_tag="Cphamn1_0219"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958672.1"
/db_xref="GI:189499202"
/db_xref="GeneID:6373874"
/translation="MNMNTELMTIEDVADYQRALIMAFEAGEITETKLNAGMSASKAL
LETFKVIKADEWQFPFE"
gene 212972..213472
/locus_tag="Cphamn1_0220"
/db_xref="GeneID:6373875"
CDS 212972..213472
/locus_tag="Cphamn1_0220"
/note="TIGRFAM: phage terminase, small subunit, , P27
family;
PFAM: terminase small subunit P27;
KEGG: sgl:SG0725 hypothetical protein"
/codon_start=1
/transl_table=11
/product="phage terminase small subunit"
/protein_id="YP_001958673.1"
/db_xref="GI:189499203"
/db_xref="InterPro:IPR006448"
/db_xref="GeneID:6373875"
/translation="MSTNKRFTPMKRLPKQMHILQGTYRPARHDGEPEFPAASTKPPK
HLTPAARAVWRQEAVPLIETGILTEADVSMMADLCGLTASYRAVMKEIGGRFVVDSAR
EDGAQVKNPAWQIARDMLQLINSMRLQFGLSPVSRAKVIAPEKPEPVNEWARFDQPVK
RDKFGG"
misc_feature 213119..213415
/locus_tag="Cphamn1_0220"
/note="Phage terminase, small subunit; Region:
Terminase_4; pfam05119"
/db_xref="CDD:218445"
gene 213469..213573
/locus_tag="Cphamn1_0221"
/db_xref="GeneID:6373876"
CDS 213469..213573
/locus_tag="Cphamn1_0221"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958674.1"
/db_xref="GI:189499204"
/db_xref="GeneID:6373876"
/translation="MIRTNPLDIVAPELFMSVVFRWKDGALRFHPEAR"
gene 213804..213932
/locus_tag="Cphamn1_0222"
/pseudo
/db_xref="GeneID:6373877"
gene 214319..214504
/locus_tag="Cphamn1_0223"
/db_xref="GeneID:6373878"
CDS 214319..214504
/locus_tag="Cphamn1_0223"
/note="KEGG: dau:Daud_1704 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958675.1"
/db_xref="GI:189499205"
/db_xref="GeneID:6373878"
/translation="MTTKEIAIRNIQDLPEDATWEDIQERINFISGIRKGLRELDEGK
GISHEEIKEEFKEWLSN"
gene 214489..214787
/locus_tag="Cphamn1_0224"
/pseudo
/db_xref="GeneID:6373879"
gene 214979..216910
/locus_tag="Cphamn1_0225"
/pseudo
/db_xref="GeneID:6373880"
gene 216966..217706
/locus_tag="Cphamn1_0226"
/db_xref="GeneID:6373881"
CDS 216966..217706
/locus_tag="Cphamn1_0226"
/note="PFAM: protein of unknown function DUF169;
KEGG: mba:Mbar_A0516 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958676.1"
/db_xref="GI:189499206"
/db_xref="InterPro:IPR003748"
/db_xref="GeneID:6373881"
/translation="MTPEKLSRTLVESEDLSYNPIAVKFVASLGNLPEGVKKFGAFSG
QTAPKSFLCAMWGDALRGAGPFYTTKDQQICGGGAISAGFGSPMPLEAAEKFMIGDGK
LFGNMDALRCSLSSTMPFEDGEFEAEIVGPLAAMNDDTLRPDVVLIVCKPYQGQHIMR
AYGFDSGEPVHGIAGGSTCEMVSSYVVKTGKPTFTLGDTGGNAGLGLASDELILTFPY
DRLGIAVSNLPRICRTSSMHKHTLFHER"
misc_feature 216984..217649
/locus_tag="Cphamn1_0226"
/note="Uncharacterized ArCR, COG2043; Region: DUF169;
pfam02596"
/db_xref="CDD:217131"
gene complement(217837..218301)
/locus_tag="Cphamn1_0227"
/db_xref="GeneID:6373882"
CDS complement(217837..218301)
/locus_tag="Cphamn1_0227"
/note="KEGG: pin:Ping_0885 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958677.1"
/db_xref="GI:189499207"
/db_xref="GeneID:6373882"
/translation="MAEEKQSLIQTTKNALVVVREAMIIIIVLLLFLSPSLINETMIK
AGFTKASFFGGTIEWEKQLKESRAQVEKANQDLAGVQEKFVQVATELESIRETAPPDE
KARIDNLTKEIRISSAKTEAIQSELSLTIEKQDNILQDIRQLPARQVRKPSR"
gene complement(218629..218922)
/locus_tag="Cphamn1_0228"
/db_xref="GeneID:6373883"
CDS complement(218629..218922)
/locus_tag="Cphamn1_0228"
/note="KEGG: mmw:Mmwyl1_0849 domain of unknown function
DUF1814"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958678.1"
/db_xref="GI:189499208"
/db_xref="GeneID:6373883"
/translation="MIDILHKRLERYSASDAKQEEQALKEILQEVALYGLWRADFFEI
AAFQGGTCLRILHGLPRFSEDLDFILRDSPDNDMVQALIARQVSGLVAYGIIH"
misc_feature complement(<218638..218829)
/locus_tag="Cphamn1_0228"
/note="Nucleotidyl transferase of unknown function
(DUF1814); Region: DUF1814; pfam08843"
/db_xref="CDD:220039"
gene complement(218919..219569)
/locus_tag="Cphamn1_0229"
/db_xref="GeneID:6373884"
CDS complement(218919..219569)
/locus_tag="Cphamn1_0229"
/note="KEGG: plt:Plut_1790 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958679.1"
/db_xref="GI:189499209"
/db_xref="GeneID:6373884"
/translation="MQTLIEHITNAGLGDRVVTEAQLSRLLDGTPQRRYNLVNRALHR
GDLLRLRRGRYLLSSAVKQGKVHPFVLAQALQPGSYISFETALSFHGWIPESTPITMS
VTPDRRRQTLDIPKFGHFLYYPLALNTGWFLENVDRDTFAGQSCLIAQPLRALLDIFC
LWKLDFPGLRSLTEGMRIDEYELATIGIDDLERLRPVYQHKRMDTCISALQRELIQ"
misc_feature complement(219093..>219371)
/locus_tag="Cphamn1_0229"
/note="Domain of unknown function (DUF4095); Region:
DUF4095; pfam13338"
/db_xref="CDD:222054"
gene 220074..220640
/locus_tag="Cphamn1_0230"
/db_xref="GeneID:6373885"
CDS 220074..220640
/locus_tag="Cphamn1_0230"
/note="PFAM: NLP/P60 protein;
KEGG: plt:Plut_0897 NLP/P60 family protein"
/codon_start=1
/transl_table=11
/product="NLP/P60 protein"
/protein_id="YP_001958680.1"
/db_xref="GI:189499210"
/db_xref="InterPro:IPR000064"
/db_xref="GeneID:6373885"
/translation="MHASLFLICFSFFLSLGLPTESFASITPEKNVIEQRLEKPACSM
SSFFNDVRQFFGVRYRWGGQTPEGFDCSGFVKFMYERVFSMRLPRTSIEMASIGEKVE
RDELRPGDLVFFNTRGKRINHVGIFIGNGTFIHASVSRGVTEDRLQQNYFAKRFVGAV
RVIDNIIPAIPDFSTPSEEESNESAQHS"
sig_peptide 220074..220148
/locus_tag="Cphamn1_0230"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.987) with cleavage site probability 0.979 at
residue 25"
misc_feature 220239..220556
/locus_tag="Cphamn1_0230"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene 220811..221014
/locus_tag="Cphamn1_0231"
/db_xref="GeneID:6373886"
CDS 220811..221014
/locus_tag="Cphamn1_0231"
/note="KEGG: csc:Csac_1518 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958681.1"
/db_xref="GI:189499211"
/db_xref="GeneID:6373886"
/translation="MRTNIVIDDKLLREAFSVSDAKTKKALVEEALEVLIRLKKRKDL
TELAGKVEFYEDFDYKKMRQVRE"
misc_feature 220811..220951
/locus_tag="Cphamn1_0231"
/note="Uncharacterized protein conserved in bacteria
(DUF2191); Region: DUF2191; pfam09957"
/db_xref="CDD:204355"
gene 221011..221418
/locus_tag="Cphamn1_0232"
/db_xref="GeneID:6373887"
CDS 221011..221418
/locus_tag="Cphamn1_0232"
/note="PFAM: PilT protein domain protein;
KEGG: gvi:gll2899 hypothetical protein"
/codon_start=1
/transl_table=11
/product="PilT protein domain-containing protein"
/protein_id="YP_001958682.1"
/db_xref="GI:189499212"
/db_xref="InterPro:IPR002716"
/db_xref="GeneID:6373887"
/translation="MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELL
QGAKSEEDWKLLDGHLSSQLYLEATERTWSDAARIFFELRRKGITVRSSVDCCIAQIA
LEHDAILLHKDADFDRIASVRPLRSEWFPEQMV"
misc_feature 221017..221397
/locus_tag="Cphamn1_0232"
/note="PIN domain of the Rv0301 toxin of Mycobacterium
tuberculosis and other uncharacterized, annotated PilT
protein domain proteins; Region: PIN_MtRv0301; cd09882"
/db_xref="CDD:189052"
misc_feature order(221023..221025,221134..221136,221293..221295,
221347..221349)
/locus_tag="Cphamn1_0232"
/note="putative active site [active]"
/db_xref="CDD:189052"
gene complement(221828..223999)
/locus_tag="Cphamn1_0233"
/db_xref="GeneID:6373888"
CDS complement(221828..223999)
/locus_tag="Cphamn1_0233"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: bte:BTH_II0030 radical SAM domain/B12 binding domain
protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001958683.1"
/db_xref="GI:189499213"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6373888"
/translation="MQICLINALTISDLGSSEPSRDSEQVEISAPLGILGLASMVQRE
CKNIDTTIINLNKLYLEYLKEQKSSSKATFVDTIIDHIETCAPSPDVMGFSTICSSYP
LTLRLATLYKKRHSNTTVILGGPQASATDLASIKAFPEIDMIFRGEAEYGFVSFLESM
QENKPGHLYNIKGLTFRNSNNIIRNANADPVMDLDSLPVPAYDLDPYINNYKTLSLEI
GRGCPYSCSFCSTSTFFGRKFRLKSPGTILDQMRFIKRKFGIDNIGLDHDMFSADRKK
VRAFCETLIASGEKFYWGCSARVDCVDNDLLALMAQAGCNGIFFGIESASKRMQKSIN
KNLDLANAVDTIAHADKMGIKSGVSLITAFPDETDEELNNTLNFFIGSLRFDNAAPQI
GILAPLAGSPLYNKHKDELVLDHIFSEMSFQGWTFDDQDLTLIEQHPEVFPDFYSIPN
PEIPRREFKQIRDFVTALQVWFRWLPVAMQQESANMLKISRHWIQWCVENNIPEKIDD
EIPYYCHRRFADDFLRFINDVYIPRLSSHQEIIAELTKTEGFFHPYKDHPEDAKEETV
SGSESDTMNDDKGGTTIASSSHLFSLASYPYIPDNVLVTDLNIDYKKLLECLRKKEDL
KRVKQNKVTIAFREIEHGDIKIQVRQLSTLSKEILHLCNGLLSISEIISLFSQKHTQI
NGVPVQKAATFMLIELFKQGLITLCDEKQEGKDELPLKSSA"
misc_feature complement(223472..223909)
/locus_tag="Cphamn1_0233"
/note="B12 binding domain_like associated with radical SAM
domain. This domain shows similarity with B12
(adenosylcobamide) binding domains found in several
enzymes, such as glutamate mutase, methionine synthase and
methylmalonyl-CoA mutase, but it lacks the...; Region:
radical_SAM_B12_BD; cd02068"
/db_xref="CDD:239019"
misc_feature complement(222758..223363)
/locus_tag="Cphamn1_0233"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:214792"
gene complement(224284..224625)
/locus_tag="Cphamn1_0234"
/db_xref="GeneID:6373889"
CDS complement(224284..224625)
/locus_tag="Cphamn1_0234"
/note="KEGG: pfa:PF10_0351 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958684.1"
/db_xref="GI:189499214"
/db_xref="GeneID:6373889"
/translation="MASKSEKTPKKLKEIRIEQDSNLTPEEVREEVVVEQPEEVRELQ
IEIPPDMDVSEDEIKKITAETANELLDTISGERAAVRRINSRIQQKIRIQEYQSIRKN
DIIKQIWRGQQ"
gene complement(224719..224871)
/locus_tag="Cphamn1_0235"
/db_xref="GeneID:6373890"
CDS complement(224719..224871)
/locus_tag="Cphamn1_0235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958685.1"
/db_xref="GI:189499215"
/db_xref="GeneID:6373890"
/translation="MVVFLDEFIYFFIENGNCQTLITAPVTLTFFSVIRSTPFFVSDL
CGNTKP"
gene complement(224897..225754)
/locus_tag="Cphamn1_0236"
/db_xref="GeneID:6373891"
CDS complement(224897..225754)
/locus_tag="Cphamn1_0236"
/note="PFAM: Peptidase M23;
KEGG: plt:Plut_2033 membrane proteins related to
metalloendopeptidase-like"
/codon_start=1
/transl_table=11
/product="peptidase M23"
/protein_id="YP_001958686.1"
/db_xref="GI:189499216"
/db_xref="InterPro:IPR016047"
/db_xref="GeneID:6373891"
/translation="MTRRHLTIVVLLLLCSLLNRGSDAAENNKPDLALDATTKEQGEF
FVATVNGSSSRPDLWFNGQSFAMFWQNDSSYRALVPVENMLKPGSYALLAKSNGWKEK
IPVEVTSNNLPVQKIWLDEKTNSLKATKEEKAQVKAALRTVSESKLWSDLFSYPSQGR
KSSPFGVKRSYNGAPVSSYHKGIDIAVPQGTPVLSPAKGKIVLTGYEAERFHVHGNTV
IIDHGQGLTSIYMHLHSISVNEGDIVSKGDTIGTVGSTGISTGAHLHWGVYLYGTSVD
PELFVKNQY"
sig_peptide complement(225680..225754)
/locus_tag="Cphamn1_0236"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.980 at
residue 25"
misc_feature complement(224924..>225505)
/locus_tag="Cphamn1_0236"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:223810"
misc_feature complement(224924..225223)
/locus_tag="Cphamn1_0236"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:216566"
gene complement(225762..226565)
/locus_tag="Cphamn1_0237"
/db_xref="GeneID:6373892"
CDS complement(225762..226565)
/locus_tag="Cphamn1_0237"
/note="PFAM: metallophosphoesterase;
KEGG: cte:CT2092 hypothetical protein"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_001958687.1"
/db_xref="GI:189499217"
/db_xref="InterPro:IPR004843"
/db_xref="GeneID:6373892"
/translation="MRFGVLTDVHYGNGDRDAETRDLHGCFDFWENNSVDFTVQLGDL
IEGKGPEAEENLAGVAAVLREYPGTLYHVAGNHCLGAPLDRYLKETGLVSPYYTFSMK
GIRFIVLHGMDINPETVPESDTDRSRKNLLMSDPWATLYCGAIGQQQINWLVQQLDES
KRQGEAAILLCHFPLLKESSDKPHGLLWNHDEVTDVLRRYRNIIACITGHLHRSAYVE
RYGIHFLTMPPFVKRNDPANYSCGMIELDNTFLTVSDQSLNLLHKLKIT"
misc_feature complement(225810..226565)
/locus_tag="Cphamn1_0237"
/note="Homo sapiens Nbla03831 and related proteins,
metallophosphatase domain; Region: MPP_Nbla03831; cd07396"
/db_xref="CDD:163639"
misc_feature complement(225927..226562)
/locus_tag="Cphamn1_0237"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:215750"
misc_feature complement(order(225930..225932,225936..225938,
226050..226052,226335..226340,226437..226439,
226536..226538,226542..226544))
/locus_tag="Cphamn1_0237"
/note="active site"
/db_xref="CDD:163639"
misc_feature complement(order(225930..225932,225936..225938,
226050..226052,226338..226340,226437..226439,
226536..226538,226542..226544))
/locus_tag="Cphamn1_0237"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163639"
gene complement(226660..227751)
/locus_tag="Cphamn1_0238"
/db_xref="GeneID:6373893"
CDS complement(226660..227751)
/locus_tag="Cphamn1_0238"
/note="TIGRFAM: peptide chain release factor 2;
PFAM: Class I peptide chain release factor; PCRF domain
protein;
KEGG: plt:Plut_2031 peptide chain release factor 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_001958688.1"
/db_xref="GI:189499218"
/db_xref="InterPro:IPR000352"
/db_xref="InterPro:IPR004374"
/db_xref="InterPro:IPR005139"
/db_xref="GeneID:6373893"
/translation="MKEQKSVCTRYTTALNSYGGIFDVDERLHKIGELEQITTEENFW
ENQQEANKIVKEINDHKLWTEGFLALEKQTADLREELEIAEELGEESLAEEIDSRIGS
IEQKIAEIEFKNMLSGKDDPGNALLTINAGAGGTEAQDWAEMLYRMYLRWAERKGFKI
FTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVRVSPFDSNARRHTSFASVY
SYPEAPPDAEIEIRKEDLELSTFRSGGKGGQNVNKVETAVRIKHIPSGIVVSCQQERS
QFQNRERATKMLRAQLYKKQREEEEARKQAVEGTKKKIEWGSQIRSYVMDDRRIKDHR
TNYERHDIENVLDGDIDDFIEKYLSEFTN"
misc_feature complement(226678..227721)
/locus_tag="Cphamn1_0238"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:234799"
misc_feature complement(227176..227454)
/locus_tag="Cphamn1_0238"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:217573"
misc_feature complement(226750..227076)
/locus_tag="Cphamn1_0238"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 227817..229937
/locus_tag="Cphamn1_0239"
/db_xref="GeneID:6373894"
CDS 227817..229937
/locus_tag="Cphamn1_0239"
/note="PFAM: alpha amylase catalytic region;
SMART: alpha amylase catalytic sub domain;
KEGG: cte:CT2089 alpha-amylase family protein"
/codon_start=1
/transl_table=11
/product="alpha amylase"
/protein_id="YP_001958689.1"
/db_xref="GI:189499219"
/db_xref="InterPro:IPR006047"
/db_xref="InterPro:IPR006589"
/db_xref="GeneID:6373894"
/translation="MDYLMSETKNQFFSHHATTSFPYFASGVNLYTIIHMNHTFYQHK
PVISSRKFDGRRRVIIDRVSPEIDGGQYPVKRIPGETVRVEADIFTDGADVISAEICY
RSASARAWKRSPMIALFNDAWEGEFAVGDPGNYEFTIEAWIDHFQTWRRGLIKKIEAG
QDVSLAFRIGAGIVEKAVERASKSDGARMRALISVMTSGDAEEAASTALSDELDGLMQ
SCPDKEAASQYNRVLKVRVDQKKAGFSTWYEFFPRSWAVEPGRHGTFRECKRLLPLIA
RMGFDVVYLPPIYPIGSTKRKGKNNTLVAGPDDPGSCWAIGSGEGGHKSVHPELGTIE
DFGEFVREAEAEGISVALDIAFQCSPDHPYVKEHPQWFKWRPDGTVQFAENPPKRYED
ILPLDFETEDWKNLWTELKSVLLFWIEKGVRIFRVDNPHTKAFLFWDWVIDEITGEYP
DTVFLAEAFTRPKVMARLAKGGFNQSYTYFTWRNTKHDLQKYLTELTTSEVKEYMRPN
FWPNTPDILHEELQTGSRATFLTRMALAATLSSNYGMYAPAYELCEYLPVKPGKEEYL
DSEKYEIKQWDMDRPSNIRAEITAVNHIRRENAALQQTNNIEFVRVDAGEGREHDMLM
GYVKRSVDDSNIILTVVNLDPQNTHAGWLRFPLEAFKLPHTHHFRVEDLMSGRTFEWD
GEWNYVELNPEHMPVHIFKVNLFS"
misc_feature 227982..228536
/locus_tag="Cphamn1_0239"
/note="Domain of unknown function (DUF3416); Region:
DUF3416; pfam11896"
/db_xref="CDD:221298"
misc_feature 228546..229613
/locus_tag="Cphamn1_0239"
/note="Alpha amylase catalytic domain found in GlgE-like
proteins; Region: AmyAc_GlgE_like; cd11344"
/db_xref="CDD:200482"
misc_feature 228549..>229379
/locus_tag="Cphamn1_0239"
/note="Glycosidases [Carbohydrate transport and
metabolism]; Region: AmyA; COG0366"
/db_xref="CDD:223443"
misc_feature order(228705..228707,228717..228719,228750..228752,
228756..228758,228885..228887,228981..228986,
228990..228995,229092..229094,229098..229103,
229185..229187,229359..229361,229524..229529)
/locus_tag="Cphamn1_0239"
/note="active site"
/db_xref="CDD:200482"
misc_feature order(228939..228947,228966..228974,229011..229013,
229107..229118,229122..229124,229131..229133,
229197..229199,229203..229208,229215..229217,
229227..229229)
/locus_tag="Cphamn1_0239"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:200482"
misc_feature order(229098..229100,229185..229187,229359..229361)
/locus_tag="Cphamn1_0239"
/note="catalytic site [active]"
/db_xref="CDD:200482"
misc_feature order(229194..229202,229251..229253,229260..229265)
/locus_tag="Cphamn1_0239"
/note="acceptor binding site [chemical binding]; other
site"
/db_xref="CDD:200482"
gene 230044..233361
/locus_tag="Cphamn1_0240"
/db_xref="GeneID:6373895"
CDS 230044..233361
/locus_tag="Cphamn1_0240"
/note="KEGG: pvi:Cvib_1672 trehalose synthase;
TIGRFAM: trehalose synthase; trehalose synthase-fused
possible maltokinase;
PFAM: alpha amylase catalytic region;
SMART: alpha amylase catalytic sub domain"
/codon_start=1
/transl_table=11
/product="trehalose synthase"
/protein_id="YP_001958690.1"
/db_xref="GI:189499220"
/db_xref="InterPro:IPR006047"
/db_xref="InterPro:IPR006589"
/db_xref="InterPro:IPR012810"
/db_xref="InterPro:IPR012811"
/db_xref="GeneID:6373895"
/translation="MPRASASYQPEPLWYKDAIIYEAHVKTFFDSNNDGVGDFEGLRQ
KLPYLESLGITAIWLLPFYPSPLRDDGYDIADYMEVNPDYGTIEDFKAFLDDAHKLGL
KVITELVINHTSDQHAWFQRARQAEPGSVERDFYMWSSDPKKYSGVRIIFQDFEASNW
TWDPVAGEYYWHRFYHHQPDLNFENPAVEKAIYKVLDYWLEMGVDGLRLDAVPYLYAE
EGTNCENLPRTHKFLQRLRKHVDGKFPNRMLLAEANQWPEDAAEYFGEGDECHMNFHF
PLMPRMYMALEMEDRFPIIDILDQTPGIPEECQWASFLRNHDELTLEMVTDEERDYMR
RVYAHDPKARINLGIRRRLAPLMSNDRRKIELMNIMLLSLPGTPVLYYGDEIGMGDNF
YLGDRDGVRTPMQWNGDRNAGFSRANPQQLQLPVIIDPEYHYEGANVEVQESNINSLL
WWTRHMLSTSRRYKALSRGDIIFIQSQNPQVLIFTRTYKDETMLCIINLSRNAQAVTM
DLSEYEGYIPEEVFSLSHFPGISARPYTVTLGPYGYFWFKLVRSEDEIGSRRYIDKPF
AKVAAMDDLFSGKVLDRLESRVLPQYIRGCRWFGGKARKIVRVSVNDSIPVPACQNTV
YLIVEVRYPSGSNDLYQLPVTFLPTGEFNPDEDFFMKQVICSVKIGENEGYLCDATYQ
KEFHRFLLDVIIAGKGLKGGIFKLTAEKGSTLEEYLPQEEDDSMNSVIFGLEQSNTSI
MYDDKLCLKLYRKISSGISPEVEICRTLTEKTSFESSPGYLGALYLSRSRKDTSSLGI
LQNFIPNEGDAWSQTLHYVHRYYEEVLVLLPQLEEIPEIPPIGGETVEMPEIMHGLIG
EIYLGMVNKLAERTAEMHLSLASPDLGPDFLPEAFTTLYQRSIYQSMREQVKRGMVML
KEQMKGIAKDYKGIAADLLGREQEILDRLSHIKARRIPASKIRIHGDYHLGQVLWTGK
DFVIIDFEGEPARSISERRIKRAVFRDLAGMMRSFHYAAFNVLIQDRSIRPEDAEKLE
PWAELWSFYTGQHFYDVYAAAVGGHGLIPENITEQHLLLRSYLMDKAIYELNYELNNR
PEWVGIALKGLQRLLES"
misc_feature 230080..231693
/locus_tag="Cphamn1_0240"
/note="trehalose synthase; Region: treS_nterm; TIGR02456"
/db_xref="CDD:233874"
misc_feature 230083..231420
/locus_tag="Cphamn1_0240"
/note="Alpha amylase catalytic domain found in Trehalose
synthetase; Region: AmyAc_TreS; cd11334"
/db_xref="CDD:200473"
misc_feature order(230665..230667,230671..230676,230797..230799,
230992..230997)
/locus_tag="Cphamn1_0240"
/note="active site"
/db_xref="CDD:200473"
misc_feature order(230671..230673,230797..230799,230995..230997)
/locus_tag="Cphamn1_0240"
/note="catalytic site [active]"
/db_xref="CDD:200473"
misc_feature 231766..233352
/locus_tag="Cphamn1_0240"
/note="trehalose synthase-fused probable maltokinase;
Region: TreS_Cterm; TIGR02457"
/db_xref="CDD:233875"
misc_feature <232243..233358
/locus_tag="Cphamn1_0240"
/note="Uncharacterized protein, probably involved in
trehalose biosynthesis [Carbohydrate transport and
metabolism]; Region: Ble; COG3281"
/db_xref="CDD:225820"
gene 233402..236077
/locus_tag="Cphamn1_0241"
/db_xref="GeneID:6373896"
CDS 233402..236077
/locus_tag="Cphamn1_0241"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC;
PFAM: cation transporting ATPase domain protein; Haloacid
dehalogenase domain protein hydrolase; E1-E2
ATPase-associated domain protein;
KEGG: mta:Moth_0887 ATPase, E1-E2 type"
/codon_start=1
/transl_table=11
/product="P-type HAD superfamily ATPase"
/protein_id="YP_001958691.1"
/db_xref="GI:189499221"
/db_xref="InterPro:IPR000695"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR004014"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006068"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:6373896"
/translation="MDIFSDSIEEVLEKLGTTSGGLSTKEAEARIARYGENRLREEEK
ISVWAIVRQQFQSVLVWLLIFAVIISLLLGDVIESAVIGGILVANSVIGFLQEFRAEK
ALEALKKISGLKAKVLRDGHIVKLETNLLVPGDVILLETGDRIPADARLLHHMNLECQ
EAMLTGESTPVSKKTDSVSSGAPLAERFNMVYSGTIVSKGRATAIVTGTGMETELGRI
AELLSDDRDGRRSPLQKKINHFSRRLALIVIIAAVLMFLLTWMSGEDLLETFKTALSL
AVAAIPEGLPAVVALTLAKGVQRMVKHNAIVRHLPAIETLGSSSVICSDKTGTMTVNR
MSVRKIYADGQEIEVQDNRQAGHAGREDLELLFRIGLLCNDARPDPGGGIFGDPTEAA
LLLSARHYGQEPDKVSQRYPRIDEIGFDSERKMMSTLHDVSGGGKVMYTKGAPDVLLS
RCTRIMNNGEVIPLDKATHDAIIRKNEAFAAEALRVLGFAWKDVGVQDDFTEDDLIFV
GLQAMNDPPRPEVIDAVAKCRKAGIKVVMITGDQKLTAEAIGRELGITGRAMTGADLD
TVEDIGRVVEEVSIFARVSPEQKINIVTALQKNDHVVAMTGDGVNDAPALKQADIGVA
MGQGGTDVAREASTMVLIDDNFASIVKAVEEGRAIFDNLRKFVFSLLAGNISEVMIII
LAVIVGLKLPLVAIQILWINLVTDGLPALALGFEPKAKNLMARPPIAKNTFIVDRLMI
LRLVVVCVVITAACLGLYVHALFSSGWSWGERLGSADPDYLYASTMAFTSLVLLEMVN
AFHAKSETENIFTVKVFSNPWLTAAVAFSLVLHLLVLYTPLNQVFYTVPLGLADWGMV
MLVCATLILADMVFKWKVKPNHYVRQGVNIHTSKR"
misc_feature 233420..236032
/locus_tag="Cphamn1_0241"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: MgtA; COG0474"
/db_xref="CDD:223550"
misc_feature 233420..233611
/locus_tag="Cphamn1_0241"
/note="Cation transporter/ATPase, N-terminus; Region:
Cation_ATPase_N; pfam00690"
/db_xref="CDD:201397"
misc_feature 233642..234346
/locus_tag="Cphamn1_0241"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:215733"
misc_feature 234515..234766
/locus_tag="Cphamn1_0241"
/note="Putative hydrolase of sodium-potassium ATPase alpha
subunit; Region: Hydrolase_like2; pfam13246"
/db_xref="CDD:222006"
misc_feature 234950..235276
/locus_tag="Cphamn1_0241"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 235016..235018
/locus_tag="Cphamn1_0241"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature 235472..236017
/locus_tag="Cphamn1_0241"
/note="Cation transporting ATPase, C-terminus; Region:
Cation_ATPase_C; pfam00689"
/db_xref="CDD:216063"
gene 236074..236730
/locus_tag="Cphamn1_0242"
/db_xref="GeneID:6373897"
CDS 236074..236730
/locus_tag="Cphamn1_0242"
/note="KEGG: cte:CT2087 esterase/lipase"
/codon_start=1
/transl_table=11
/product="esterase/lipase"
/protein_id="YP_001958692.1"
/db_xref="GI:189499222"
/db_xref="GeneID:6373897"
/translation="MSSAYHVQTTVSGRYLVDEPACKGPFRLLVGFHGYGQVAEDELV
LLDRMTGSRDWLCCAVEALHPFYSRNGTVGACWMTDRDRERMIEENVRYVDAVIADLQ
GSYSLEGTLVYHGFSQGTAMASRAALLGSHEASAVMLIGGDIPREITRLERMSRVHIA
RGKRDRIYTDKLFERDISRLAQRCVPAVQYSFPGGHEADEAYLVAAGKFLSESAGGDS
"
misc_feature 236146..236718
/locus_tag="Cphamn1_0242"
/note="Predicted esterase [General function prediction
only]; Region: COG0400"
/db_xref="CDD:223477"
gene complement(236777..236965)
/locus_tag="Cphamn1_0243"
/db_xref="GeneID:6373898"
CDS complement(236777..236965)
/locus_tag="Cphamn1_0243"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958693.1"
/db_xref="GI:189499223"
/db_xref="GeneID:6373898"
/translation="MQSAKFSDIKIQLQIDDDTVYYFAVDNSGNIILRKKTDDYELGQ
KDIGKPESDDSWQDRLDL"
gene 237452..237847
/locus_tag="Cphamn1_0244"
/db_xref="GeneID:6373899"
CDS 237452..237847
/locus_tag="Cphamn1_0244"
/note="PFAM: DNA polymerase beta domain protein region;
KEGG: csc:Csac_1667 DNA polymerase, beta domain protein
region"
/codon_start=1
/transl_table=11
/product="DNA polymerase beta domain-containing protein"
/protein_id="YP_001958694.1"
/db_xref="GI:189499224"
/db_xref="InterPro:IPR002934"
/db_xref="GeneID:6373899"
/translation="MHAKDSKNGEIKRLRQYIENRSDVSFAMVFGSFARGKERKGSDL
DVAIFFLEDVVPQGFDVLVFEQELSDVAEREVDLVILNSAGIFLRHQIQKCHQMLVLH
SKLAYERYRERTMQDYDEYRYLNPEKSYA"
misc_feature 237482..237730
/locus_tag="Cphamn1_0244"
/note="Nucleotidyltransferase (NT) domain of
Staphylococcus aureus kanamycin nucleotidyltransferase,
and similar proteins; Region: NT_KNTase_like; cd05403"
/db_xref="CDD:143393"
misc_feature order(237539..237547,237554..237556,237575..237580,
237584..237586,237674..237676,237680..237682)
/locus_tag="Cphamn1_0244"
/note="active site"
/db_xref="CDD:143393"
misc_feature order(237539..237547,237554..237556,237575..237580,
237584..237586)
/locus_tag="Cphamn1_0244"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143393"
misc_feature order(237578..237580,237584..237586,237680..237682)
/locus_tag="Cphamn1_0244"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143393"
misc_feature order(237674..237676,237680..237682)
/locus_tag="Cphamn1_0244"
/note="antibiotic binding site [chemical binding]; other
site"
/db_xref="CDD:143393"
gene 237840..238265
/locus_tag="Cphamn1_0245"
/db_xref="GeneID:6373900"
CDS 237840..238265
/locus_tag="Cphamn1_0245"
/note="PFAM: protein of unknown function DUF86;
KEGG: gme:Gmet_3258 protein of unknown function DUF86"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958695.1"
/db_xref="GI:189499225"
/db_xref="InterPro:IPR008201"
/db_xref="InterPro:IPR008202"
/db_xref="GeneID:6373900"
/translation="MPDSEVIEKKLRRILLYLQELRRLSFMNLEDFQEDIVKKRFVER
NIELCIEAMIDVCRHLVSSLNLQEPESYADCFRILARGSVITDARQKTFAELARFRNR
LIHIYDDVDDSITFDIYSNRLSDFDDFVNVIRGYIRSCE"
misc_feature 237939..238238
/locus_tag="Cphamn1_0245"
/note="Protein of unknown function DUF86; Region: DUF86;
pfam01934"
/db_xref="CDD:202053"
gene complement(238272..239093)
/gene="mazG"
/locus_tag="Cphamn1_0246"
/db_xref="GeneID:6373901"
CDS complement(238272..239093)
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="functions in degradation of stringent response
intracellular messenger ppGpp; in Escherichia coli this
gene is co-transcribed with the toxin/antitoxin genes
mazEF; activity of MazG is inhibited by MazEF in vitro;
ppGpp inhibits mazEF expression; MazG thus works in
limiting the toxic activity of the MazF toxin induced
during starvation; MazG also interacts with the GTPase
protein Era"
/codon_start=1
/transl_table=11
/product="nucleoside triphosphate pyrophosphohydrolase"
/protein_id="YP_001958696.1"
/db_xref="GI:189499226"
/db_xref="InterPro:IPR004518"
/db_xref="InterPro:IPR011551"
/db_xref="GeneID:6373901"
/translation="MEQSGKRTIAELKDDVLNNSGGSIQEKFNRVISLVQVLRSECPW
DRKQTPESLTHLLLEESYELVHAIDENDDQELKKELGDLFLHVAFQVLMAEESGKFTF
SGVFDALCDKLISRHPHVFGQTVAGNEQEVLKNWESLKLKEKGRRSLLDGVPKAMSEL
LRAYRVQKKVSGVGFDWTNEEGVLDKLLEEIEELKQASSKEEKEEEFGDLLFTIVNYS
RFIGTNPEDALRKSTNKFMKRFMAVEELVRQSEKSWQEHTAEELDALWEKVKKQQ"
misc_feature complement(238278..239027)
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="nucleoside triphosphate pyrophosphohydrolase;
Reviewed; Region: mazG; PRK09562"
/db_xref="CDD:236569"
misc_feature complement(238674..239006)
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature complement(order(238755..238760,238764..238772,
238776..238790,238797..238799,238824..238826,
238833..238835,238839..238856,238863..238868,
238875..238877,238890..238892,238899..238901,
238908..238913,238920..238925,238932..238934,
238941..238946,238992..238994,239001..239006))
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature complement(order(238848..238850,238857..238859,
238905..238907,238914..238916))
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature complement(238284..238616)
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature complement(order(238296..238298,238308..238310,
238317..238319,238362..238364,238371..238376,
238383..238412,238416..238418,238425..238433,
238452..238454,238458..238463,238467..238475,
238476..238478,238509..238514,238530..238535,
238569..238577,238584..238586,238596..238598,
238605..238610,238614..238616))
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature complement(order(238467..238469,238479..238481,
238515..238517,238524..238526,238536..238538,
238563..238571))
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="active site"
/db_xref="CDD:212136"
misc_feature complement(order(238467..238469,238515..238517,
238524..238529))
/gene="mazG"
/locus_tag="Cphamn1_0246"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
gene 239220..239891
/locus_tag="Cphamn1_0247"
/db_xref="GeneID:6373902"
CDS 239220..239891
/locus_tag="Cphamn1_0247"
/note="PFAM: NAD-dependent epimerase/dehydratase;
short-chain dehydrogenase/reductase SDR; KR domain
protein;
KEGG: cte:CT2085 oxidoreductase, short-chain
dehydrogenase/reductase family"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001958697.1"
/db_xref="GI:189499227"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:6373902"
/translation="MDLKGRTAVVTGSSSGIGQELCTMLAQKGAAVYGFSRRRSVVEH
PSFTWMQTDVTKQEEIDRAFDTVLRAHQRVDLLVNNAGFGLFGSIETLDPEAWNRLIA
TNLTAAFLCTRRVVSGMKEAGRGTIVNVASIAGKRGFRNGSAYCASKFGLNGFSEALV
EELREEGIRVCSINPGSTGTEFFEHAGIEPKKLMKTGDVASLILTMIELPDDMLPDQV
VVRPL"
misc_feature 239220..239885
/locus_tag="Cphamn1_0247"
/note="short chain dehydrogenase; Provisional; Region:
PRK07326"
/db_xref="CDD:235990"
misc_feature 239241..239879
/locus_tag="Cphamn1_0247"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(239253..239255,239259..239270,239325..239333,
239373..239381,239457..239465,239526..239528,
239607..239615,239652..239654,239664..239666,
239742..239753,239757..239762)
/locus_tag="Cphamn1_0247"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(239529..239531,239613..239615,239652..239654,
239664..239666)
/locus_tag="Cphamn1_0247"
/note="active site"
/db_xref="CDD:212491"
gene 239908..241329
/gene="trmE"
/locus_tag="Cphamn1_0248"
/db_xref="GeneID:6373903"
CDS 239908..241329
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="in Escherichia coli this protein is involved in the
biosynthesis of the hypermodified nucleoside
5-methylaminomethyl-2-thiouridine, which is found in the
wobble position of some tRNAs and affects ribosomal
frameshifting; shows potassium-dependent dimerization and
GTP hydrolysis; also involved in regulation of
glutamate-dependent acid resistance and activation of
gadE"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase TrmE"
/protein_id="YP_001958698.1"
/db_xref="GI:189499228"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004520"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005289"
/db_xref="InterPro:IPR006073"
/db_xref="InterPro:IPR013684"
/db_xref="GeneID:6373903"
/translation="MNEPVSLPLQGEPIAAVATPVGVGALAVVRMSGEGVFSIADRVF
TKVRSPETSLADSPGYTAHFGKLYDGDRMIDEVIVLVFRSPDSFTVEDMVEITCHGGP
VVTKHVLKLLLDNGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARSESAYRTAVN
QMSGGLSGRLGTLREQLLHSCALLELELDFSEEDVEFQSREELSGQVENLQQEVDKLV
QSYQHGRLLREGVATAIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYIEECFIYE
KTMFRLTDTAGLREAAEEIEHEGIRRSYEKIAEADLILYLLDIGASDYEEETSTVTEL
RQKHPDIQLLVVANKTDTTEDSAERSEKVAEKTGCQVLGISALKEDGLDRLKAGMSSM
VEGLDKLHDASVLVTSMRHYEALRNASDALRNARELIDAQSETELIAFELRSALDYVG
EITGKVVNEEVLNVIFGQFCIGK"
misc_feature 239941..241326
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:235392"
misc_feature 239944..240309
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature 240589..241089
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature 240616..240639
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature order(240625..240627,240631..240642,240949..240954,
240958..240960,241030..241038)
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature 240661..240711
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature 240700..240702
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature order(240754..240786,240790..240834)
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature 240757..240768
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature 240949..240960
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature 241030..241038
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature 241105..241317
/gene="trmE"
/locus_tag="Cphamn1_0248"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene 241682..243214
/locus_tag="Cphamn1_0249"
/db_xref="GeneID:6373904"
CDS 241682..243214
/locus_tag="Cphamn1_0249"
/note="KEGG: cte:CT1012 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958699.1"
/db_xref="GI:189499229"
/db_xref="GeneID:6373904"
/translation="MTHPARISALLLLAVVLSITVPIKPALSSEGQTEPNGELSAIYE
EWRVSDDENMGVVGLGVHHYFSDYFSLGVGSWMAVRGERGGFITLGIDGRLHLPITER
IDLESGVFVGAGGGRGGYFLSGGGLMVRPYAQLTYDISSWGRLSAGVSHVTFPNGGTV
ESTRPYISFSLPFYTYMGDGWKDGGLPHALQKQHDKSRSNSLAVVVRDLQPVSDARTT
GGAVQDDVTLLGIEWRSYFNDTWYARLETEGAAGGSSRGYMQILVGGGAQIPVADNLY
VSADASVGGGGGGGVDTGGGLLLDASAGMYYYLTPSLFAGLSGAYLIAPDGTFEAGSL
ALKLGYRSGGYSAGRKNSVDPSPEKPSNMRLRVVTQTYYKASDLWRTHHAERNVENIG
VQIDAFLDRDWYLTGQGIAAYGGDAGAYMTGLVGLGIRKNLIGGVFVNGEGLVGAAGG
GGLATGSGLVWQGNVGLGYDLHPSLSALVTAGRMGAFDGDFKADVLGLSLAYNFNSYL
LH"
sig_peptide 241682..241768
/locus_tag="Cphamn1_0249"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.968) with cleavage site probability 0.905 at
residue 29"
gene 243267..243638
/locus_tag="Cphamn1_0250"
/db_xref="GeneID:6373905"
CDS 243267..243638
/locus_tag="Cphamn1_0250"
/EC_number="2.7.8.7"
/note="KEGG: cte:CT1935 holo-[acyl-carrier protein]
synthase;
TIGRFAM: holo-acyl-carrier-protein synthase;
PFAM: 4'-phosphopantetheinyl transferase"
/codon_start=1
/transl_table=11
/product="holo-acyl-carrier-protein synthase"
/protein_id="YP_001958700.1"
/db_xref="GI:189499230"
/db_xref="InterPro:IPR002582"
/db_xref="InterPro:IPR004568"
/db_xref="InterPro:IPR008278"
/db_xref="GeneID:6373905"
/translation="MVNHCDIGVDIVDIRRIRKSFEKYGDSFLRRVLTEKEISYCKGK
KDMMPSVAARFAAKEAISKAVGSGISGGFSWRSVEIDNDEHGKPFMRVLDRSLGIQDS
SISLSLSHDGDYAVAFVQIEC"
misc_feature 243321..243632
/locus_tag="Cphamn1_0250"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:234610"
gene 243728..243922
/locus_tag="Cphamn1_0251"
/db_xref="GeneID:6373906"
CDS 243728..243922
/locus_tag="Cphamn1_0251"
/note="KEGG: maq:Maqu_2212 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958701.1"
/db_xref="GI:189499231"
/db_xref="GeneID:6373906"
/translation="MECMKTVQIQCPFCGALNETLIDCSIEPPEEYVEDCEVCCSPIL
LVVHSVDGEIPVVEVHRENE"
misc_feature 243752..243913
/locus_tag="Cphamn1_0251"
/note="Cysteine-rich CPXCG; Region: Cys_rich_CPXG;
pfam14255"
/db_xref="CDD:206423"
gene complement(243996..244508)
/locus_tag="Cphamn1_0252"
/db_xref="GeneID:6373907"
CDS complement(243996..244508)
/locus_tag="Cphamn1_0252"
/note="TIGRFAM: rare lipoprotein A;
PFAM: Rare lipoprotein A;
KEGG: plt:Plut_2019 rare lipoprotein A"
/codon_start=1
/transl_table=11
/product="rare lipoprotein A"
/protein_id="YP_001958702.1"
/db_xref="GI:189499232"
/db_xref="InterPro:IPR005132"
/db_xref="InterPro:IPR012997"
/db_xref="GeneID:6373907"
/translation="MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIP
SEITSSLQLERDSLAAADAEDELGKLFMVKEGKASYYADRFHGRLTANGERFNMHELT
AAHKSLPFGSMVRVTNLNNGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAK
VRIEVYEGDS"
misc_feature complement(<244014..>244289)
/locus_tag="Cphamn1_0252"
/note="Lipoproteins [Cell envelope biogenesis, outer
membrane]; Region: RlpA; COG0797"
/db_xref="CDD:223868"
misc_feature complement(244020..244283)
/locus_tag="Cphamn1_0252"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:217497"
gene 244891..246090
/locus_tag="Cphamn1_0253"
/db_xref="GeneID:6373908"
CDS 244891..246090
/locus_tag="Cphamn1_0253"
/EC_number="3.6.3.16"
/note="KEGG: cte:CT2070 ArsA ATPase family protein;
TIGRFAM: arsenite-activated ATPase ArsA;
PFAM: Anion-transporting ATPase"
/codon_start=1
/transl_table=11
/product="arsenite-activated ATPase ArsA"
/protein_id="YP_001958703.1"
/db_xref="GI:189499233"
/db_xref="InterPro:IPR003348"
/db_xref="GeneID:6373908"
/translation="MRLILMTGKGGVGKTSMAAATGLKCAEMGYKTLVLSTDPAHSLA
DSFAVELGHQPKEVCQNLWGAELDVLEELEQNWGSVKRYITEVLQARGLEGVQAEELA
ILPGSDEIFGLVRVFRHFKEGNYDVLIIDSAPTGTALRLLSIPEVAGWYMRRFYKPLE
KVAVTLRPIVEPLFRPIAGFSLPDKEMMDVPYDFYQKIEKLGEILMDNAVTSVRLVTN
PEKMVLNESLRAHAYLSLYDISTDLIIANRIIPDEVTDPYFQYWKENQKIYRAEIHEN
FKPLPVKEVPLYSREICGLKTLDTLKDLLYGDEDPSQVYYKEKTMRVEQVKNGYTLEI
ALPGIQKDRIEISKKGDELNIRIGNHRRNLVLPQALATLKTAGAEMEDELLKISFEEI
NVRKKGK"
misc_feature 244891..245772
/locus_tag="Cphamn1_0253"
/note="Anion-transporting ATPase; Region: ArsA_ATPase;
pfam02374"
/db_xref="CDD:217004"
misc_feature 244897..>245316
/locus_tag="Cphamn1_0253"
/note="ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular concentration
of oxyanion produces...; Region: ArsA; cd02035"
/db_xref="CDD:238992"
misc_feature 244912..244938
/locus_tag="Cphamn1_0253"
/note="P loop; other site"
/db_xref="CDD:238992"
misc_feature order(244921..244923,244927..244938,245002..245004,
245281..245283)
/locus_tag="Cphamn1_0253"
/note="Nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:238992"
misc_feature order(245002..245010,245281..245304)
/locus_tag="Cphamn1_0253"
/note="DTAP/Switch II; other site"
/db_xref="CDD:238992"
misc_feature 245002..245010
/locus_tag="Cphamn1_0253"
/note="Switch I; other site"
/db_xref="CDD:238992"
misc_feature <245491..245745
/locus_tag="Cphamn1_0253"
/note="ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular concentration
of oxyanion produces...; Region: ArsA; cd02035"
/db_xref="CDD:238992"
misc_feature 245869..246060
/locus_tag="Cphamn1_0253"
/note="alpha-crystallin domain (ACD) found in
alpha-crystallin-type small heat shock proteins, and a
similar domain found in p23 (a cochaperone for Hsp90) and
in other p23-like proteins; Region:
alpha-crystallin-Hsps_p23-like; cl00175"
/db_xref="CDD:241659"
gene 246231..246518
/locus_tag="Cphamn1_0254"
/db_xref="GeneID:6373909"
CDS 246231..246518
/locus_tag="Cphamn1_0254"
/note="KEGG: pvi:Cvib_1658 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958704.1"
/db_xref="GI:189499234"
/db_xref="GeneID:6373909"
/translation="MAFQVGDPVIYKKPKSSTCPGPRARDVYPLKHGETYHYIVDKFW
KVVGVNNDDTVEVVTRKGKKHRIEKDDPNLQKAHLFKYIVYRKRFPDVSPD"
gene complement(246538..246771)
/locus_tag="Cphamn1_0255"
/db_xref="GeneID:6373910"
CDS complement(246538..246771)
/locus_tag="Cphamn1_0255"
/note="KEGG: pvi:Cvib_1657 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958705.1"
/db_xref="GI:189499235"
/db_xref="GeneID:6373910"
/translation="MANVLVTSYYSRWDLNGHKGRIALYDSSNQLIENRIFNEPAEFQ
VIISMLRNEKPLWFDTKVHHLRTGSEPVGEGED"
gene complement(246928..248256)
/locus_tag="Cphamn1_0256"
/db_xref="GeneID:6373911"
CDS complement(246928..248256)
/locus_tag="Cphamn1_0256"
/note="PFAM: pentapeptide repeat protein;
KEGG: plt:Plut_2015 pentapeptide repeat family protein"
/codon_start=1
/transl_table=11
/product="pentapeptide repeat-containing protein"
/protein_id="YP_001958706.1"
/db_xref="GI:189499236"
/db_xref="InterPro:IPR001646"
/db_xref="GeneID:6373911"
/translation="MKKTLIFSSILLALQGGPACNTTFGFDSATLKELLSGVGEWNSM
RSGQPSRTINLDKATLEDATLVNADLHNASMVNTRLNGAKLNGADFRNAKLFSASLKR
TDLKQTDLSGANLRGADLKNSYAKEAKFINADLTGTDFRYANLEGADLTGAVLENALF
FDANLSSADLRGVNLTGAKMLGQATLLNARISNNTILPSGKRATPLWASLHGARFSKE
TERSPVVMKYEPLPPPVVSGNATESDPESITTENVSETLLMEDVTAWNELRKQYPEME
TDLQDEDLDDAGLKGADMKKLDMTSSTMNGAKLDHADFSESDLSSTSWKRASLVETVF
RNANLQGADFNRAFMKKADLSGADLTGAQLRETRLQEADLKKSNLSKTNLYDTDLTCA
DLRGADLTGANLLYTILDNALISAETITPSGEKATTGWAVLKGATFVREK"
sig_peptide complement(248191..248256)
/locus_tag="Cphamn1_0256"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.979) with cleavage site probability 0.648 at
residue 22"
misc_feature complement(247981..248100)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247807..248070)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(247891..248010)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247690..247920)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(247801..247920)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247717..247830)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247135..247365)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(247219..247347)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247159..247278)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(247018..247233)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(247045..247158)
/locus_tag="Cphamn1_0256"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(248328..249149)
/locus_tag="Cphamn1_0257"
/db_xref="GeneID:6373912"
CDS complement(248328..249149)
/locus_tag="Cphamn1_0257"
/note="PFAM: protein of unknown function DUF6
transmembrane;
KEGG: aoe:Clos_0259 protein of unknown function DUF6
transmembrane"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958707.1"
/db_xref="GI:189499237"
/db_xref="InterPro:IPR000620"
/db_xref="GeneID:6373912"
/translation="MSIVLMLIASACFATMAAMIKGIGPSLPIPEIILFRSIVPLPFF
LSVLWLRKKKFVVTAWKTLVLRSLFGFLAISGFYYALTHLPLAICVFLGKTQPLILAV
LAPWIVGEKATATVWIAIGTGLAGIILILEPSAGWATAAWAAIGAALASAMAHLLVRK
LNRTDDPITIITNFFVITALISSIWMGESFILPDHSEWLLLIGVALFSTIGQYLMTLA
YRMDNAPVVAAASYTSIIFSILYGYLFWNEIPPQSAITGGFLIFAGSVILLRSRI"
sig_peptide complement(249096..249149)
/locus_tag="Cphamn1_0257"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.986) with cleavage site probability 0.957 at
residue 18"
misc_feature complement(248340..248684)
/locus_tag="Cphamn1_0257"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:216178"
gene 249364..250065
/locus_tag="Cphamn1_0258"
/db_xref="GeneID:6373913"
CDS 249364..250065
/locus_tag="Cphamn1_0258"
/note="PFAM: NAD-dependent epimerase/dehydratase; NmrA
family protein;
KEGG: cte:CT2065 hypothetical protein"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_001958708.1"
/db_xref="GI:189499238"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR008030"
/db_xref="GeneID:6373913"
/translation="MTEKTKYSGKVLVAGATGKTGTWVVSRLQHYGVPVRVLTRSAEK
AKTLGDVEIVEGRIQSDEDVAKAVSGCTGVISALGSSEVFGDASPGEVDRDGVIRLVD
QAARAGVKHFGLVSSMAVTKWYHPLNLFAGVLMKKFAAEEHLRDVFGKEGRSYTIVRP
GGLKDGGPLLHDLHVDQGDRLWSGWINRGDVAELLVVSLWTDKAKNKTFEVVNEGEEE
HAQKSLEGYYDKLAS"
misc_feature 249391..250008
/locus_tag="Cphamn1_0258"
/note="atypical (a) SDRs, subgroup 5; Region: SDR_a5;
cd05243"
/db_xref="CDD:187554"
misc_feature 249394..249951
/locus_tag="Cphamn1_0258"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:222146"
misc_feature order(249406..249408,249412..249423,249481..249483,
249532..249537,249595..249600,249637..249639,
249709..249714,249772..249774,249841..249852)
/locus_tag="Cphamn1_0258"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187554"
misc_feature order(249640..249642,249712..249714,249760..249762,
249772..249774)
/locus_tag="Cphamn1_0258"
/note="putative active site [active]"
/db_xref="CDD:187554"
gene complement(250181..253198)
/locus_tag="Cphamn1_0259"
/db_xref="GeneID:6373914"
CDS complement(250181..253198)
/locus_tag="Cphamn1_0259"
/note="PFAM: UbiE/COQ5 methyltransferase; Radical SAM
domain protein; Methyltransferase type 11;
Methyltransferase type 12;
KEGG: pca:Pcar_2089 methyltransferase"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001958709.1"
/db_xref="GI:189499239"
/db_xref="InterPro:IPR000209"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR007197"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6373914"
/translation="MRNSIASWDRYSIDATPIYFSRKTADWFVPNQEGDRVLQSLYNK
NGDCYGKEDNRFLSRLPEQGSPGYTGRASSLTLKNIRELWFHITNRCNMACSHCLFSS
SPEEEAELSAEDILSLAGEAWQQGCRLFALTGGEPLVHREIDRIVNGILELPDTHLVI
LTNGLLIKKLFSSLNGDSHRVHLQISLDGLEENHDSLRGKDAFSKLTANLQWLKKEGI
FYTLSMCVTRQNIPDMEPMIDFAASVGAKNVHFMWYFIRGRGTGQQFAHPEELFINLT
LAARKAEKLGIPIDNIESLKSRVFSPPGTIHDGSTAGWESLAIGPDKKLYPSAALIGI
PELSISLDEGLVNAWKNSPVLETVRNASIVDTASPMRFILGGGDIDHSYIHNGTFSGS
DPYLPLYERTVLWLIAGSVPEENATTRNPALRVQMGEILESCSAHGSIALIHSNCLLA
TASQSSLFSIQDFYTDAVGDKNEAILNPVGYDTALVNHIPSEYRFRGYGCGSPVLDAG
ISEGDDIVDLGCGNGVECFIASRLTGKNGSVRGIDMLDPMLHMARKAEKSVAENLGYN
NVSFLTGYLETLPLETASADVVLSNCVMNLSVNKRKAYAEILRVLRPGGKLVISDVVC
ETEPDASISNDETLRGECIAGALSESHLMALLEETGFEATQLIKRFPYRNIQGHPFYS
LTYSSVKPRLTETVTAMYRGPLPELVTCRGTILRPGKKTFIDRTEAEMLGESLFIFDE
HDYVVNIEAENCCSCSIAPDEKQMNGQDKESGSSPEKRHASGCMICGEQLIYTENEQE
HSCGYCGRKYSSSSLCGKGHYVCDTCHSDDAVEVIKHICLATEETDMIELMERIRSHP
SIPVHGPEYHAMIPGIILATWRNLGGDIHDMIIESGINRGKTIPGGSCGFMGICGAAT
GTGIAFSILLKANPVKAAERKNVQQITAAVLEEIAALQAARCCQRDCWIALKKAAELS
KEIMDIPLRAEKVLKCKQHEANKECFGKNCPIY"
misc_feature complement(252332..252946)
/locus_tag="Cphamn1_0259"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(252005..252940)
/locus_tag="Cphamn1_0259"
/note="Predicted Fe-S oxidoreductases [General function
prediction only]; Region: COG0535"
/db_xref="CDD:223609"
misc_feature complement(order(252401..252406,252524..252526,
252641..252643,252710..252718,252791..252796,
252800..252802,252902..252910,252914..252916,
252920..252922,252926..252928))
/locus_tag="Cphamn1_0259"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(251219..251674)
/locus_tag="Cphamn1_0259"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:222415"
misc_feature complement(251327..251659)
/locus_tag="Cphamn1_0259"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(251426..251428,251474..251482,
251567..251572,251627..251647))
/locus_tag="Cphamn1_0259"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(253313..253567)
/locus_tag="Cphamn1_0260"
/db_xref="GeneID:6373915"
CDS complement(253313..253567)
/locus_tag="Cphamn1_0260"
/note="PFAM: bacteriochlorophyll C binding protein;
KEGG: pvi:Cvib_0366 bacteriochlorophyll C binding protein"
/codon_start=1
/transl_table=11
/product="bacteriochlorophyll C binding protein"
/protein_id="YP_001958710.1"
/db_xref="GI:189499240"
/db_xref="InterPro:IPR001470"
/db_xref="GeneID:6373915"
/translation="MSNNSGTFTDWAVAYGKIVEIFTDGHWWVMADYMEGVGKSSKRL
LKNAYPYIKEGTTSAGLQGSSPETSGYARPTKAVEQRFKD"
misc_feature complement(253316..253561)
/locus_tag="Cphamn1_0260"
/note="Bacteriochlorophyll C binding protein; Region:
Bac_chlorC; pfam02043"
/db_xref="CDD:216856"
gene complement(253671..255077)
/locus_tag="Cphamn1_0261"
/db_xref="GeneID:6373916"
CDS complement(253671..255077)
/locus_tag="Cphamn1_0261"
/note="PFAM: Na+/solute symporter;
KEGG: plt:Plut_2009 sodium:solute symporter family
protein"
/codon_start=1
/transl_table=11
/product="Na+/solute symporter"
/protein_id="YP_001958711.1"
/db_xref="GI:189499241"
/db_xref="InterPro:IPR001734"
/db_xref="GeneID:6373916"
/translation="MQTLDLIIIIGFLAAMAGYGIWQGHTNRTTGDYFLGGRNLPWIV
AMFSIVATETSVLTFVSIPGIAFRGDWTFLQLAMGYIIGRMLVSAVLLPIYFRQGVSS
IYEVIGNRFGPHMQKLASTVFLVTRILADGVRFLATAVVVEAVTGWSLSASVLIIGIV
TLVYTLSGGIRTIVWIDSIQFVLYFVGGIITIAFIAANLDVGLPEALGALANEGKLKV
INHDWRLFSEPWAFFSALTGGILLSFASHGVDYMMVQRVLGCKNLSAARKAMIGSGFF
VFIQFTVFLLAGSLIYLFIGDVQIEKDREFASFIVNHLPVGLKGLLLAGVLSAAMSTL
SSSINSLASSTVTDLLGGNASLKRSRLISLGWAAVLISIALVFDESDNAIVVLGLKIA
SFTYGGLLGLFLLSVSGKEFHVFSLSMGLIAGMGTVFVLDYLTFAWTWYIAASVLANL
LVVWITETVLNNSFIRRS"
misc_feature complement(253722..255065)
/locus_tag="Cphamn1_0261"
/note="uncharacterized subgroup of the Na(+)/iodide (NIS)
cotransporter subfamily; putative solute-binding domain;
Region: SLC5sbd_NIS-like_u1; cd11493"
/db_xref="CDD:212062"
misc_feature complement(order(254079..254084,254091..254093,
254916..254918,254925..254927))
/locus_tag="Cphamn1_0261"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212062"
gene complement(255099..256262)
/locus_tag="Cphamn1_0262"
/db_xref="GeneID:6373917"
CDS complement(255099..256262)
/locus_tag="Cphamn1_0262"
/note="PFAM: conserved hypothetical protein;
KEGG: cte:CT2057 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958712.1"
/db_xref="GI:189499242"
/db_xref="InterPro:IPR008302"
/db_xref="GeneID:6373917"
/translation="MVLNGLDILLQNPGPLKKRNVALIANQTSVTLNLKYSWLELRKK
DINLKVIFSPEHGLFSTEQDQVAVTEQPGIDCNVISLYGDSASSLLPDESLLQNIDLV
IFDIQDIGSRYYTYSNTLALFMEAVSGLDIEVLVLDRPNPLNGITVEGPLPDPAYRSF
VGILPVPPRHSLTAGELALLYLDQNKLDVNLRILSMKGWERSMHFPDTGLHWIGPSPN
MPTWQTALVYPGMCLFEGLNVSEGRGTTTPFLHFGAPFIEPDVLSTYLASIGIEGVLF
RPAYFKPSFHKYTGEVSGAMFLHVTDPVTFAAFMTGIAITAALHELYPDQLEFLREVY
EFNDRFPAFDLLCGSSRLRTMIENNTPLAEIRASWADDEQEFLSIKQNYHLYH"
misc_feature complement(255105..256202)
/locus_tag="Cphamn1_0262"
/note="Protein of unknown function (DUF1343); Region:
DUF1343; pfam07075"
/db_xref="CDD:219287"
gene complement(256413..257345)
/locus_tag="Cphamn1_0263"
/db_xref="GeneID:6373918"
CDS complement(256413..257345)
/locus_tag="Cphamn1_0263"
/note="PFAM: Nucleotidyl transferase;
KEGG: cte:CT2056 mannose-1-phosphate guanylyltransferase"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_001958713.1"
/db_xref="GI:189499243"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:6373918"
/translation="MKAFVLAAGFGSRLRPLTNDTPKPLVPVLNVPSICYTLALLKEA
GIDTVICNVHYHTELIHRFFSEHNNFGMDIQISEETTILGTGGGLKRCEHMLDNEPFL
LINSDIIANFNLKSFFDCHNSSQNQGTLMLFKTPEAKTIGDVGMREGKVWDFRNMRKT
GLHSDYIYAGAAVLSPSIFPYLSMGFSSIVDTGFTGLIAHESLGYFRHEGFWQDIGTT
QSFWGANITSRKNILNLGKRIRRQTELDPHTISSHAVIHSDATVHESVVGRQCCIDKG
ASVCHSVLLPGSVIEKNSVIDRAIVFPGGMISVD"
misc_feature complement(256434..257342)
/locus_tag="Cphamn1_0263"
/note="glucose-1-phosphate thymidylylransferase, long
form; Region: rmlA_long; TIGR01208"
/db_xref="CDD:233311"
misc_feature complement(256695..257342)
/locus_tag="Cphamn1_0263"
/note="NTP_transferase_like_1 is a member of the
nucleotidyl transferase family; Region:
NTP_transferase_like_1; cd06422"
/db_xref="CDD:133044"
misc_feature complement(order(257025..257027,257031..257033,
257190..257192,257322..257330))
/locus_tag="Cphamn1_0263"
/note="Substrate binding site; other site"
/db_xref="CDD:133044"
misc_feature complement(order(256698..256700,256704..256706,
257025..257027))
/locus_tag="Cphamn1_0263"
/note="metal-binding site"
/db_xref="CDD:133044"
misc_feature complement(<256443..256598)
/locus_tag="Cphamn1_0263"
/note="Glucose-1-phosphate adenylyltransferase, C-terminal
Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase. It
catalyzes the first committed and...; Region:
LbH_G1P_AT_C; cd04651"
/db_xref="CDD:100056"
misc_feature complement(order(256539..256541,256548..256550,
256554..256556,256590..256595))
/locus_tag="Cphamn1_0263"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:100056"
gene complement(257342..258346)
/locus_tag="Cphamn1_0264"
/db_xref="GeneID:6373919"
CDS complement(257342..258346)
/locus_tag="Cphamn1_0264"
/note="PFAM: aminoglycoside phosphotransferase;
KEGG: cte:CT2055 hypothetical protein"
/codon_start=1
/transl_table=11
/product="aminoglycoside phosphotransferase"
/protein_id="YP_001958714.1"
/db_xref="GI:189499244"
/db_xref="InterPro:IPR002575"
/db_xref="GeneID:6373919"
/translation="MHSEKKYLRYYFSELQLRKLRIEPIAGDASTRKYYRVFSSEQTW
ILCIDPDFSTFPSNDYPFLEVQQLLCHNSVPVPRIIASSKSESSMLIEDCGNIRLQDS
ILKDPSFALTIYRESIDCMIRLQSIRGQKDTLPFNRSFDQDKLMFEFDFFMTHTLKNR
APCIHASETISTLQNEFSKISKTLFRQKHFVLNHRDYHSKNILVFRNKPVIIDFQDAR
MGLPQYDAVSLLKDSYVTLDQEFVCEMQRYHYDRLAERKMMEMSYDEYLYLFDMMAFQ
RNIKALGTFFHQVNERKNSSFEQYISPTLAYLPAYIERQKELKTAGKIILNLLEPLNQ
"
misc_feature complement(257567..258286)
/locus_tag="Cphamn1_0264"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:216618"
misc_feature complement(257492..258268)
/locus_tag="Cphamn1_0264"
/note="Predicted phosphotransferase related to Ser/Thr
protein kinases [General function prediction only];
Region: COG3178"
/db_xref="CDD:225719"
gene complement(258474..258704)
/locus_tag="Cphamn1_0265"
/db_xref="GeneID:6373920"
CDS complement(258474..258704)
/locus_tag="Cphamn1_0265"
/note="KEGG: pvi:Cvib_0367 chlorosome envelope protein B"
/codon_start=1
/transl_table=11
/product="chlorosome envelope protein B"
/protein_id="YP_001958715.1"
/db_xref="GI:189499245"
/db_xref="GeneID:6373920"
/translation="MANESNNDLAGAISGLMETFTKLGQQQVEMLNNGIKSASEMAGP
LGKTMTDLTGNVVDTVNQVLQNISSSISGGSK"
gene complement(258888..259004)
/locus_tag="Cphamn1_0266"
/db_xref="GeneID:6373921"
CDS complement(258888..259004)
/locus_tag="Cphamn1_0266"
/note="KEGG: pvi:Cvib_0368 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958716.1"
/db_xref="GI:189499246"
/db_xref="GeneID:6373921"
/translation="MENSINYTTLFAPVAFYLSGVVIVFILNKFIGEHKNDQ"
gene complement(259009..260418)
/locus_tag="Cphamn1_0267"
/db_xref="GeneID:6373922"
CDS complement(259009..260418)
/locus_tag="Cphamn1_0267"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: pvi:Cvib_0369 radical SAM domain protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_001958717.1"
/db_xref="GI:189499247"
/db_xref="InterPro:IPR005839"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:6373922"
/translation="MSKAVVDKQKSLKILFVAPKGKKDSKTNQKPLFHMAIGVLVSLT
HSHHDIEIADEHFGDTVNYDGDYDFVGITSRTIDATRAYEIADEFRKKGIPVILGGLH
VSFNPEEAAQHADCIVCGEAENLWQTVLDDVVAGDLKPSYDAKDFPPVKQIVPLDYKR
IAEASKREKVDSTKSIPIYITRGCPYKCSFCVTPNFTGALYRRQADDDLKAQIVAAKE
AFFKSTGKKNAKPWFMLCDENLGISKSKLWNALDLLKECDIMFSVFLSMNFLEDDETI
KKLVDAGCNMALVGFESIKQSTLEAYNKGHVNSADKIVEVIERCRRAGLNIQANFLVN
PDLDSFEDMDELVKFIGKNNVFMPIIQIITPYPGTKMYHEYKESGLITDEDWEKYNAL
NLVVKSKHYDPVSFQHKFMQIYYQSYSWKNIVNRVRANPYPLINLLSSLAFRKHLRNQ
LKNFEKNNALPPSKKSNFL"
misc_feature complement(<260050..260280)
/locus_tag="Cphamn1_0267"
/note="B12 binding domain (B12-BD). Most of the members
bind different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide. This domain is found in
several enzymes, such as glutamate mutase; Region:
B12-binding_like; cl00293"
/db_xref="CDD:241759"
misc_feature complement(order(260116..260118,260188..260196,
260200..260208))
/locus_tag="Cphamn1_0267"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239016"
misc_feature complement(259264..259896)
/locus_tag="Cphamn1_0267"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:214792"
misc_feature complement(259288..259887)
/locus_tag="Cphamn1_0267"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(259330..259335,259423..259425,
259549..259551,259618..259626,259741..259746,
259750..259752,259843..259851,259855..259857,
259861..259863,259867..259869))
/locus_tag="Cphamn1_0267"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 260797..261270
/locus_tag="Cphamn1_0268"
/db_xref="GeneID:6373923"
CDS 260797..261270
/locus_tag="Cphamn1_0268"
/note="PFAM: 2-vinyl bacteriochlorophyllide hydratase;
KEGG: pvi:Cvib_0370 2-vinyl bacteriochlorophyllide
hydratase"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate synthase subunit,
2-oxoacid-ferredoxin oxidoreductase subunit CD"
/protein_id="YP_001958718.1"
/db_xref="GI:189499248"
/db_xref="InterPro:IPR009905"
/db_xref="GeneID:6373923"
/translation="MPRYTPEQLAKRNSSVWTDVQLILAPIQFFVFLAGVGVTFLYYQ
NNEIFSFYWVSIAILFKTFLFALLFITGAYFEKEIFNKWIFSKEFLWEDIGSVTAGAF
HLLYFVMAYLGASEDVLVWEAFLAYFTYVVNALQYLVRIVLEKLNERRLKTEGVV"
misc_feature 260806..261228
/locus_tag="Cphamn1_0268"
/note="2-vinyl bacteriochlorophyllide hydratase (BCHF);
Region: BCHF; pfam07284"
/db_xref="CDD:148725"
gene 261306..261527
/locus_tag="Cphamn1_0269"
/db_xref="GeneID:6373924"
CDS 261306..261527
/locus_tag="Cphamn1_0269"
/note="KEGG: pvi:Cvib_0371 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958719.1"
/db_xref="GI:189499249"
/db_xref="GeneID:6373924"
/translation="MLVGSFKSLWNRAVFYVGLGWLVLIALIWNTDQLATSADRQIYI
GVIAAGFLLVYVSGFIIEAMYKRKQAANR"
gene 261683..262900
/locus_tag="Cphamn1_0270"
/db_xref="GeneID:6373925"
CDS 261683..262900
/locus_tag="Cphamn1_0270"
/note="KEGG: rpa:RPA2614 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958720.1"
/db_xref="GI:189499250"
/db_xref="GeneID:6373925"
/translation="MTTATATKRVISKEDIHLKARLLSEGAKVTVNKPPATGYNPFRA
MVINGSDLATLVRQEPYTRLEVQVNGDDLEFLDCGKHLANGRMQEWFSWRDGTLSNGR
PVNAAVIGMNQDIINIHYSYSCDNNNTGRSCRFCFFFADQHVGVGKELAKMPFSKIEA
LAKEQAEAVKIATDAGWRGTLVIIGGLVDPERRGKESELVELVMAPLREQVSPEVLNE
LHITANLYPPDDFKEMERWKASGLNSTEFDLEVTNADYFKAICPGKCATYPLEYWLEA
QEASVEIFGPGRGTTSFILMGIEPMNLMLEGVEERMSKGVYPNMLVYQPVPGADMFRM
PPPNADWLVEASEKIADLYFKYEDRFDMPLAEDHRPGYTRMGRSQYIILAGDEVARRL
QEQGHELPEAYPV"
misc_feature 262025..262714
/locus_tag="Cphamn1_0270"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:214792"
gene complement(263018..263239)
/locus_tag="Cphamn1_0271"
/db_xref="GeneID:6373926"
CDS complement(263018..263239)
/locus_tag="Cphamn1_0271"
/note="KEGG: dsy:DSY0169 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958721.1"
/db_xref="GI:189499251"
/db_xref="GeneID:6373926"
/translation="MSQNSAAAFLQKMKSDSELADKVNNAENKDARWEIIRNHDFDFT
REELDHATVTELSHFERWSWEARLLADWL"
misc_feature complement(263096..263239)
/locus_tag="Cphamn1_0271"
/note="Nitrogen fixation protein of unknown function;
Region: Nif11; pfam07862"
/db_xref="CDD:219612"
gene 263451..264983
/locus_tag="Cphamn1_0272"
/db_xref="GeneID:6373927"
CDS 263451..264983
/locus_tag="Cphamn1_0272"
/note="KEGG: plt:Plut_1700 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958722.1"
/db_xref="GI:189499252"
/db_xref="GeneID:6373927"
/translation="MLDSIKNSYPLVYKYFCSLEGGEEHLRQIQELDRYWENIRERSC
PTVVLDGGELPSGAAISGDYDLLYVGGTLGILHAAVMAEKYGWKVLLLDKHVAGKSTR
DWNISREELHVLYEIGLFSEEEIEECIACRYKTGWAEFFVENGNQKRLYLDNVLDCAV
NADQLLGKARKKILFNSANRVFDRTLFRKIYRFPDYVVVEAEDQNQDLFYYKARAFVD
VMGIMSPVAMQLNDGCPQTHVCPTVGTIATGLENVDQEVGEILVSTEPADLSSGSGRQ
LIWEGFPAGGEKYITYLFFYDSVDSDNDKTLLGLFETYFRKLPDYKKPGPEFSIERPV
FGIIPAYFHDGFTRTRVIADDHILMLGDAATLGSPLTFCGFGSLVRNLSRLTGNLHES
LKVNSLDRVSLEAISAYEPNVATMANLMKYMCFNGKTDKPNFVNELMNEVMLVLDGLP
VRYRKAMFRDSMQLGELLTVGIHVALKYPEVLMATPAKLGLNGSLGMIKNMVGWALSP
TE"
gene complement(264998..265621)
/locus_tag="Cphamn1_0273"
/db_xref="GeneID:6373928"
CDS complement(264998..265621)
/locus_tag="Cphamn1_0273"
/note="KEGG: cte:CT2051 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958723.1"
/db_xref="GI:189499253"
/db_xref="GeneID:6373928"
/translation="MKVVGKSKAVVTLEACLNDSATYFSDHEKILNCNPYCKNVSYIR
ELDIFQWTFEVDDPRNHPIVAIFFVRQTEELVKGDSESLLKLSKKNKNGLDLNRPVTK
IRWRNAETIPKVVVNNNYTFIGKTNSEIFLQHQENNLTTVHFETDISLDFTLSFPLNL
MPENILKLMSEKMVSRILQQATESMLCKVQSDICCSVPEIKTEGNSQ"
gene 265858..266634
/locus_tag="Cphamn1_0274"
/db_xref="GeneID:6373929"
CDS 265858..266634
/locus_tag="Cphamn1_0274"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: pvi:Cvib_0372 short-chain dehydrogenase/reductase
SDR"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001958724.1"
/db_xref="GI:189499254"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:6373929"
/translation="MQNIVITGSSRGIGFGLAKAFLAKGCRVIISSHNKGRLDAAAAE
LKNGRSDIPLFAFICDVSRPLDVEALWDSAVGELGKVDIWINNAGVVHSMRSFWQLGY
EEIRKTLEVNLMGTIHGSHVAMCKMIAQGSGHIYNMEGQGADGSVIAGMGIFGTSKAG
VHYFSKFLIEEAKKTPVKVSTIIPGIIRTDLQVETAGKTTEGRIFLDLLGEDVRSATG
DLADRILGNSAHGNCINRMSPPDMIGKVVSAPLRFFFGQQ"
misc_feature 265858..266553
/locus_tag="Cphamn1_0274"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional; Region: PRK12748"
/db_xref="CDD:237189"
misc_feature 265867..266451
/locus_tag="Cphamn1_0274"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(265879..265881,265885..265896,265951..265959,
266032..266040,266116..266124,266188..266190,
266269..266277,266317..266319,266329..266331,
266407..266418,266422..266427)
/locus_tag="Cphamn1_0274"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(266191..266193,266275..266277,266317..266319,
266329..266331)
/locus_tag="Cphamn1_0274"
/note="active site"
/db_xref="CDD:212491"
gene 266746..267387
/locus_tag="Cphamn1_0275"
/db_xref="GeneID:6373930"
CDS 266746..267387
/locus_tag="Cphamn1_0275"
/note="PFAM: Isoprenylcysteine carboxyl methyltransferase;
KEGG: mac:MA2698 hypothetical protein"
/codon_start=1
/transl_table=11
/product="isoprenylcysteine carboxyl methyltransferase"
/protein_id="YP_001958725.1"
/db_xref="GI:189499255"
/db_xref="InterPro:IPR007269"
/db_xref="GeneID:6373930"
/translation="MLEQSLNSGYFAMHEELPFRIIFVVLYVMGFFMRGYVTSGLKKN
CQRILPKAGNMRNSSRFRIVFQRSMFFLWIFIVVSYAWYPSWMNVLKLPFPLWLRYGG
AGAGFMAFVLLIATMKSLGRYWSPLPQLMEGHELITSGPYRFVRHPMYAAMMVLFVSF
ALVTANVLVTISSLLAILLTLKWCNKEERMLMDHFGDEYREYMKHSGRFFPRP"
misc_feature <267019..267384
/locus_tag="Cphamn1_0275"
/note="Putative protein-S-isoprenylcysteine
methyltransferase [Posttranslational modification, protein
turnover, chaperones]; Region: STE14; COG2020"
/db_xref="CDD:224931"
gene 267461..268339
/locus_tag="Cphamn1_0276"
/db_xref="GeneID:6373931"
CDS 267461..268339
/locus_tag="Cphamn1_0276"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: pvi:Cvib_1587 alpha/beta hydrolase fold"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase fold protein"
/protein_id="YP_001958726.1"
/db_xref="GI:189499256"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR003089"
/db_xref="InterPro:IPR008262"
/db_xref="GeneID:6373931"
/translation="MSYLSTGRCRLYFEDTVENEGDESEAVVFFNGWSISSRYWRPLI
DVLAPQYRCVTFDQSGTGRTEIKHPKPSFTVEGLADEAAELLDRLALLGEKKLHIVGH
SMGGMIAAEICNRYQQSLISVAIINCGIFDDELLKSFHHFLVGGMIDLSMLIKGIFRY
EPFKSLFINRAIARPIDSVYRDIFVEDFAASDSQASTAVGKFTIDPSTIARYTQEAVN
IGAPLLCIAGMEDHTIPPEGMITLYDRRIERGLAPTELVTFDNAGHLPMLEVLPEFSA
VLERHLLSAKHYWESS"
misc_feature 267461..268306
/locus_tag="Cphamn1_0276"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 268336..268677
/locus_tag="Cphamn1_0277"
/db_xref="GeneID:6373932"
CDS 268336..268677
/locus_tag="Cphamn1_0277"
/note="PFAM: protein of unknown function DUF156;
KEGG: cte:CT2050 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958727.1"
/db_xref="GI:189499257"
/db_xref="InterPro:IPR003735"
/db_xref="GeneID:6373932"
/translation="MSEFNGCYAGFENKNVYFIPLPGIGISSLPGEFKLKLMDDIVTR
LKKVNGQIQGLVKMIERREQCEKVIVQFQAAKAALDKTYSLVLNNSLKECLSERDSEN
MDRILKLISKK"
misc_feature 268447..268671
/locus_tag="Cphamn1_0277"
/note="Transcriptional regulators CsoR (copper-sensitive
operon repressor), RcnR, and FrmR, and related domains;
this domain superfamily was previously known as DUF156;
Region: CsoR-like_DUF156; cd10148"
/db_xref="CDD:197385"
misc_feature order(268447..268449,268456..268461,268468..268473,
268480..268482,268489..268494,268498..268503,
268510..268521,268525..268533,268537..268545,
268549..268554,268558..268563,268570..268575,
268582..268587,268591..268599,268603..268611,
268618..268620,268630..268635,268639..268668)
/locus_tag="Cphamn1_0277"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197385"
misc_feature order(268447..268449,268456..268461,268468..268473,
268480..268482,268489..268494,268498..268503,
268510..268521,268525..268533,268537..268545,
268549..268554,268558..268563,268570..268575,
268582..268584,268591..268593,268603..268605,
268648..268650,268657..268668)
/locus_tag="Cphamn1_0277"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197385"
misc_feature order(268525..268527,268603..268605,268648..268650)
/locus_tag="Cphamn1_0277"
/note="putative allosteric switch controlling residues;
other site"
/db_xref="CDD:197385"
misc_feature order(268528..268530,268603..268605,268615..268617)
/locus_tag="Cphamn1_0277"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197385"
misc_feature order(268585..268587,268594..268599,268606..268611,
268615..268620,268630..268635,268639..268647,
268651..268656)
/locus_tag="Cphamn1_0277"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197385"
gene 268720..270045
/locus_tag="Cphamn1_0278"
/db_xref="GeneID:6373933"
CDS 268720..270045
/locus_tag="Cphamn1_0278"
/note="PFAM: outer membrane efflux protein;
KEGG: cch:Cag_0122 LipD protein"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_001958728.1"
/db_xref="GI:189499258"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:6373933"
/translation="MKLVNRVPGYILALLLFLPVTVNAEDVLRLSLEQALEIASKKNY
SLKAARARVDRAEARSSQAGRPYLPTVTLSETMVYTNDPAAAFTYKLRQGKIRQSDFD
PAKLNNPDGIADFQLGLEVRQPILNIDADKGRLESRASRKSAEYQLERAGDNIAFEVK
KTYFSLVLARNNLQAVKRSINTMRGHDREAEKAYKKGLINRSDRYSTAVRLAELQEQQ
MIIEDDIRTASDALRHMLRLEGETDIVPVDGLQSRGVSGALADDTPVSERADLKALEA
NSEAAGYRYEMVKAGSMPRVNAFLQTSLNDDFFPGLDEHSWTLGLNMSWTIYDGGRQP
GREQEAKASELESRYAYEEARDRSRFEVRHALRSISTAKSRIAVAGNALKEAGLSLDY
TGERYRSGMAMTFELLGREQAYTYAQMRLNKARYDLIVAESLLEYYTGG"
sig_peptide 268720..268794
/locus_tag="Cphamn1_0278"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.999 at
residue 25"
misc_feature 268807..270039
/locus_tag="Cphamn1_0278"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:233594"
gene 270075..270455
/locus_tag="Cphamn1_0279"
/db_xref="GeneID:6373934"
CDS 270075..270455
/locus_tag="Cphamn1_0279"
/note="KEGG: pvi:Cvib_1643 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958729.1"
/db_xref="GI:189499259"
/db_xref="GeneID:6373934"
/translation="MKHSLFLVSVGFFLLFSGCRGNKTETPEAGREPVTVQVESIMTV
GSAVERDGRSVLLVPSSALFMRGQLEGVQIVDSESVLSIRWIRSGNVFGESVEVLSGL
EVGERIVVPYDATAREGNTVTDKQ"
sig_peptide 270075..270143
/locus_tag="Cphamn1_0279"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.807) with cleavage site probability 0.430 at
residue 23"
misc_feature <270198..270443
/locus_tag="Cphamn1_0279"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:233547"
gene 270469..273681
/locus_tag="Cphamn1_0280"
/db_xref="GeneID:6373935"
CDS 270469..273681
/locus_tag="Cphamn1_0280"
/note="PFAM: acriflavin resistance protein;
KEGG: cch:Cag_0123 AcrB/AcrD/AcrF family protein"
/codon_start=1
/transl_table=11
/product="acriflavin resistance protein"
/protein_id="YP_001958730.1"
/db_xref="GI:189499260"
/db_xref="InterPro:IPR001036"
/db_xref="GeneID:6373935"
/translation="MREGIAGKLAKMFINSRLTPLLMITALLVGVLATSMTPREEEPQ
ISVPLVDLYFSYPGGSAKEVEERVAKPVEKYLTEIDGVDYVYSTSQKDFALVTVRYEV
GDDTEDSMVKLWATIMKNMDRMPAGMQFPLVKKVSIDDVSVLNLTFWSESYGPYQLRK
VASQVADELKKIKNIGDVNLNGGLKRQLRIVLDKEKLARYRITPLQISRQIRASNSRV
TAGTFKQMNREFTVNTGEFLKTAEDVRNVVVGIYNSDPVYLNDVAEVIDGPEEVENYT
FFGYGAAVGEASPGGEYPAVTLTVAKRKGSDATVLAEKVLEKVEALNGSVITKGITVT
ETRNYGETASEKVFTLLEHLLGAVVAVTIVVSLFLGWRGGLVVFASVPITFALTLLVY
YLFDYTLNRVTLFALIFVTGIVVDDSIIIAENIHRHFSMRRMPKMQAAIAAINEVGNP
TILATFTVIASVLPMVFVSGLMGPYMSPMPIGASLAMIFSLFVALIVTPWLAFRLLKA
EKTHAEEYDIRNSLYYKVYEKTLVPLLDSWWKRAIAFAFVGLLLLGSIAMIPLKMVEL
KMLPFDNKSEFQVVVDMPEGTTLEQTARATKDIVSYLKTVKEVENYQYYVGTNAPINF
NGLVRHYYLRQSADMADIQVNLVHKSERSDQSHAIAKRVRPTVQEIAAKYNANVKVVE
VPPGPPVLSTIVAEIYGPDQDQQIDLARKIKAVMEDTPGVVDVDWMVEDDEKVYNLLI
DKEKAAFRGITTEQITSTLRMALDGSETGLLHTDTELEPVVLELRLPLSARASIRDLS
DIYVKSQGMQSLTTRLPAGEMISLSELVTVREKIEDKSIYRKDLKNVVYVTADVAGVA
ESPVYAMLDMDKRIKELEMPGGYGISPLYTAPPFNEDKLAMKWDGEWQITFEVFRDLG
TAFAVVLVIIYLLIVGWFQSFRTPLVMMVAIPLSLVGIIPGHFVHGAFFTATSMIGMI
ALAGIMVRNSVLIIDFIQLRVQEGIELKQAVVESAAVRTRPILLTAGTVVIGAIVILF
DPIFQGLAISLMWGAVLSTILTLGVVPLTYYLVEKGKKSA"
sig_peptide 270469..270570
/locus_tag="Cphamn1_0280"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.761) with cleavage site probability 0.288 at
residue 34"
misc_feature 270490..273663
/locus_tag="Cphamn1_0280"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:223911"
misc_feature <271528..271953
/locus_tag="Cphamn1_0280"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:246677"
misc_feature <271834..>272184
/locus_tag="Cphamn1_0280"
/note="Bacterial ABC transporter protein EcsB; Region:
EcsB; cl11542"
/db_xref="CDD:245682"
gene 273712..274017
/locus_tag="Cphamn1_0281"
/db_xref="GeneID:6373936"
CDS 273712..274017
/locus_tag="Cphamn1_0281"
/note="KEGG: plt:Plut_1998 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958731.1"
/db_xref="GI:189499261"
/db_xref="GeneID:6373936"
/translation="MKYLAIMGHDDTRPKVRDLFRRFEVLMFSNMSIRGCSCDKGITA
QASWPGDKGVGSYSSLCFAILEDEKAVQIIEELEKNPIANDPDFPARAFLMNVEKMV"
gene 274022..274663
/locus_tag="Cphamn1_0282"
/db_xref="GeneID:6373937"
CDS 274022..274663
/locus_tag="Cphamn1_0282"
/note="PFAM: beta-lactamase domain protein;
KEGG: plt:Plut_1997 hydroxyacylglutathione hydrolase"
/codon_start=1
/transl_table=11
/product="beta-lactamase domain-containing protein"
/protein_id="YP_001958732.1"
/db_xref="GI:189499262"
/db_xref="InterPro:IPR001279"
/db_xref="GeneID:6373937"
/translation="MYLKQFRTGGDRNFGYLVADEESREAFVVDPSNNPALIVDHARE
KGFGIRYVFCTHGHSDHTNGNEEIARLTGLVPLLFGSVCPVTAIKVQDGAVFPLGNLE
VKVIHTPGHTPDSLCIYAGDALFTGDTLFVGKVGGTDLGAQAEEEFRSLHESIMVLPD
SVRVFPGHDYGTSPNSTIGDEKKTNPFLLQPDIAAFIHLKKNWAAYKKEHGIA"
misc_feature 274058..274612
/locus_tag="Cphamn1_0282"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; cl00446"
/db_xref="CDD:241867"
gene 275144..275590
/locus_tag="Cphamn1_0283"
/db_xref="GeneID:6373938"
CDS 275144..275590
/locus_tag="Cphamn1_0283"
/note="PFAM: CBS domain containing protein;
KEGG: cch:Cag_0126 CBS"
/codon_start=1
/transl_table=11
/product="signal-transduction protein with CBS domains"
/protein_id="YP_001958733.1"
/db_xref="GI:189499263"
/db_xref="InterPro:IPR000644"
/db_xref="GeneID:6373938"
/translation="MDQLVKLRTQPVSALMQKDFHTIKGSCTVAEAIQLMKKDHQSGL
IVEPRNDDDCYGVVTEKDILEKVIDPGEDVHRDPWNTPVFQIMSKPIISINPSLRIKY
ALRLMKRTNVRRLTVMADDKVVGVLNMSDVLHAVEELPAHDDNVAL"
misc_feature 275177..275542
/locus_tag="Cphamn1_0283"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:223591"
misc_feature 275195..275548
/locus_tag="Cphamn1_0283"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair_17; cd04630"
/db_xref="CDD:240001"
gene 275721..277424
/locus_tag="Cphamn1_0284"
/db_xref="GeneID:6373939"
CDS 275721..277424
/locus_tag="Cphamn1_0284"
/EC_number="1.3.99.1"
/note="KEGG: cte:CT2042 succinate/fumarate oxidoreductase,
flavoprotein subunit;
TIGRFAM: succinate dehydrogenase or fumarate reductase,
flavoprotein subunit;
PFAM: fumarate reductase/succinate dehydrogenase
flavoprotein domain protein; HI0933 family protein; FAD
dependent oxidoreductase; FAD-dependent pyridine
nucleotide-disulphide oxidoreductase"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase or fumarate reductase,
flavoprotein subunit"
/protein_id="YP_001958734.1"
/db_xref="GI:189499264"
/db_xref="InterPro:IPR001100"
/db_xref="InterPro:IPR003952"
/db_xref="InterPro:IPR003953"
/db_xref="InterPro:IPR004112"
/db_xref="InterPro:IPR004792"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR013027"
/db_xref="InterPro:IPR014006"
/db_xref="GeneID:6373939"
/translation="MKPFDIVVVGGGGSGLYAAMEAMKTNPSLNIAVLAKVYPNRSHT
SAAQGGANAALANKAKDDTVDMHIFDTIKGSDYLADQDAVEVLCSEAPKIIRELDNIG
TPWSRMDDKTIAQRPFGGAGRPRCCFCADKTGHTILQSLYEQCLQKGVFFFNEYFVLS
LSTDGSKSKGLIAMNMRTGKVEAFRARTVILATGGYAKMYWNRSSNAAGNTGDGQAIA
YRAGIPLKDMEFVQFHPTGLRKSGLLVTEGARGEGGYLVNNKGDRFMSTYAPEKMELG
PRDLVARSIETEILEGRGFDSPAGPYMHLDLRHLGEDLIKLRLPQIREMSMYFEGVDP
IDEPIPIRPTAHYSMGGIDTDIAGRTVMEGVYAAGEAGCVSVHGANRLGGNSLLDILV
FGRITGHTAAEEAGKFEPEEISDAEIKATEEELREYMKPTGHYERYGALREELGHTLG
ENVGIFRDAPKIQKGISDIKDLKERFRHVRVFDTSDVFNTNLMQVLELRNMLDLAETV
ATGAYAREESRGSHTRTDFPTRDDEKWHKHTTYTYVDGKPQIGEKPVTMGKHELQERT
Y"
misc_feature 275733..276905
/locus_tag="Cphamn1_0284"
/note="L-aspartate oxidase; Provisional; Region: PRK06175"
/db_xref="CDD:180442"
misc_feature 275808..277421
/locus_tag="Cphamn1_0284"
/note="succinate dehydrogenase or fumarate reductase,
flavoprotein subunitGram-negative/mitochondrial subgroup;
Region: sdhA_frdA_Gneg; TIGR01812"
/db_xref="CDD:233582"
misc_feature 277044..277421
/locus_tag="Cphamn1_0284"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:217281"
gene 277550..278584
/locus_tag="Cphamn1_0285"
/db_xref="GeneID:6373940"
CDS 277550..278584
/locus_tag="Cphamn1_0285"
/EC_number="1.3.99.1"
/note="TIGRFAM: succinate dehydrogenase and fumarate
reductase iron-sulfur protein;
KEGG: pvi:Cvib_1637 succinate dehydrogenase subunit B"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase and fumarate reductase
iron-sulfur protein"
/protein_id="YP_001958735.1"
/db_xref="GI:189499265"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR004489"
/db_xref="InterPro:IPR006058"
/db_xref="GeneID:6373940"
/translation="MAEHTEGMRDITFRINRFNPQVDNKPYFDDYTIPVEKGITVLRA
LNYIKEHVDATVSFRAFCQAGICGSCGMRINGISKLACTTQVWDELERCKVENVVKVE
PLRNMPLIKDLIVDMDPMVDKMKTYSNWVESIMPEEKMGEKEFLIAEEEFQEYDKATD
CILCASCMSECSILRANKAYVGPAILLKSHRMNVDSRDGAHNVRITELVKDHGVWDCT
HCYRCQETCVKNIPIMDSIHGVREDALLTRGVKDSSGAKHAEAFMEDIAKKGKLIEAT
LPIRTNGVGWTLKNLLPMAFKMILKRRTPPPPPLVKPSKNIKKFREEFQEMTAHVKRD
QKDHINKSGE"
misc_feature 277580..278305
/locus_tag="Cphamn1_0285"
/note="Succinate dehydrogenase/fumarate reductase, Fe-S
protein subunit [Energy production and conversion];
Region: FrdB; COG0479"
/db_xref="CDD:223555"
misc_feature 277634..277837
/locus_tag="Cphamn1_0285"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:238126"
misc_feature order(277721..277726,277733..277735,277742..277744,
277748..277759,277790..277795)
/locus_tag="Cphamn1_0285"
/note="catalytic loop [active]"
/db_xref="CDD:238126"
misc_feature order(277733..277735,277748..277750,277757..277759,
277793..277795)
/locus_tag="Cphamn1_0285"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238126"
misc_feature <277961..>278260
/locus_tag="Cphamn1_0285"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
gene 278589..279437
/locus_tag="Cphamn1_0286"
/db_xref="GeneID:6373941"
CDS 278589..279437
/locus_tag="Cphamn1_0286"
/EC_number="1.8.98.1"
/note="PFAM: protein of unknown function DUF224
cysteine-rich region domain protein;
KEGG: plt:Plut_1993 succinate/fumarate oxidoreductase"
/codon_start=1
/transl_table=11
/product="CoB--CoM heterodisulfide reductase"
/protein_id="YP_001958736.1"
/db_xref="GI:189499266"
/db_xref="InterPro:IPR004017"
/db_xref="GeneID:6373941"
/translation="MKRYAYYLSCINESMTKEVDKSIDLWQKDLDIDFVKLHESTCCG
GSNLDYVSPKHFALVNGRNIALAEKLGLDLVTSCNTCLLTIRSAKKVLDESPELREEV
NGILKKEGLEYKGTSEVRHLLWVLNEDVGLDTIREKVKVPLTNYSIATFYGCHILRPS
TILGKENPLDPTSLDDLVEALGGKTISYEHKNKCCGFHTLLVAEEESLSVASEALGEA
IESKADFIVTPCPLCHTVLDGYQTKALKQANIKKSIPVFHLSEMVGLALGYTPRQLGI
KRHMVT"
misc_feature 278592..279431
/locus_tag="Cphamn1_0286"
/note="Heterodisulfide reductase, subunit B [Energy
production and conversion]; Region: HdrB; COG2048"
/db_xref="CDD:224959"
misc_feature 278598..278846
/locus_tag="Cphamn1_0286"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature 279030..279302
/locus_tag="Cphamn1_0286"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene 279609..280664
/gene="hemE"
/locus_tag="Cphamn1_0287"
/db_xref="GeneID:6373942"
CDS 279609..280664
/gene="hemE"
/locus_tag="Cphamn1_0287"
/EC_number="4.1.1.37"
/note="catalyzes the formation of coproporphyrinogen from
uroporphyrinogen III"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="YP_001958737.1"
/db_xref="GI:189499267"
/db_xref="InterPro:IPR000257"
/db_xref="InterPro:IPR006361"
/db_xref="GeneID:6373942"
/translation="MLKNDLFLRALKRQPVPRTPIWVMRQAGRYLPEYRAIREKTDFL
TLCKTPELATEVTIQPVDIIGVDAAIIFSDILVVNEAMGMNVEIIESKGIRLSPPIRS
QVDIDRLIIPDINEKLGYVMDALRMTKKELDGRVPLIGFSGAAWTLFTYAVEGGGSKN
YAFAKKMMYREPKMAHMLLSKISRVITEYLLMQIEAGADAVQIFDSWASALSEDDYRE
FALPYIKESVQAVKTKYPDTPVIVFSKDCNTILSDIADTGCDAMGLGWNMDISKARAE
LKDRVTIQGNMDPTVLYGTHDKIRAEAGKILERFGQHSECSGHVFNLGHGILPDVDPE
NLKCLVDFVKEESTKYH"
misc_feature 279627..280643
/gene="hemE"
/locus_tag="Cphamn1_0287"
/note="methylcobalamin:coenzyme M methyltransferase;
Validated; Region: PRK06252"
/db_xref="CDD:235753"
misc_feature 279630..280643
/gene="hemE"
/locus_tag="Cphamn1_0287"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:238368"
misc_feature order(279678..279695,279708..279710,279720..279722,
279735..279737,279816..279836,279870..279872,
279885..279887,280029..280031,280059..280061,
280077..280079,280218..280220,280224..280229,
280335..280337,280581..280583)
/gene="hemE"
/locus_tag="Cphamn1_0287"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238368"
misc_feature order(279681..279683,279693..279695,279828..279830,
280059..280061,280224..280226,280581..280583)
/gene="hemE"
/locus_tag="Cphamn1_0287"
/note="active site"
/db_xref="CDD:238368"
gene 280802..281620
/locus_tag="Cphamn1_0288"
/db_xref="GeneID:6373943"
CDS 280802..281620
/locus_tag="Cphamn1_0288"
/note="PFAM: Ion transport protein; Ion transport 2 domain
protein;
KEGG: plt:Plut_1991 potassium channel protein"
/codon_start=1
/transl_table=11
/product="Ion transport protein"
/protein_id="YP_001958738.1"
/db_xref="GI:189499268"
/db_xref="InterPro:IPR003091"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR013099"
/db_xref="GeneID:6373943"
/translation="MNQQSTFRKKLQHIIFDFNTIPAKLFDLVLIAAILLSVVVVMLD
SVTRIHLDYGDVLYIMEWFFTLLFTLEYALRLYVASSKTKYAFSFFGIIDLLSILPTY
FSILFPGTQYLLVIRFFRVLRIFRLLKLGKFVREGEFVKASLMASSRKIVIFLFFVLV
TVSIIGALMYLIEGEENGFHSIPEGVYWAIVTITTVGYGDIYPQTIMGRMLAAVLMIT
GYSIIAVPTGIVSAEMASMNEKIKSDLSGIKSCCTSLDHDEDAGFCKVCGKPIR"
misc_feature 280976..281476
/locus_tag="Cphamn1_0288"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:215968"
misc_feature 281297..281494
/locus_tag="Cphamn1_0288"
/note="Ion channel; Region: Ion_trans_2; pfam07885"
/db_xref="CDD:219619"
gene complement(281630..282499)
/locus_tag="Cphamn1_0289"
/db_xref="GeneID:6373944"
CDS complement(281630..282499)
/locus_tag="Cphamn1_0289"
/note="PFAM: UspA domain protein;
KEGG: fjo:Fjoh_1627 UspA domain protein"
/codon_start=1
/transl_table=11
/product="UspA domain-containing protein"
/protein_id="YP_001958739.1"
/db_xref="GI:189499269"
/db_xref="InterPro:IPR006015"
/db_xref="InterPro:IPR006016"
/db_xref="GeneID:6373944"
/translation="MKKILVPTDFSDHAAYAFEVAVSIARKSGAALHLFHVIAVPDYP
EITDIIAYRTLGNVNVLEEIENKLAQTAQCEECSDIEVTWSVDFDSPSDKISRKAADE
HFDLIVIGSHGKQGINRILLGSTTEKVIQHASCLVLTIKEPLSYFSPSNIVFGSNFYG
EIAAGFSVLQDFASFYDATLHLLKVNTRSHFETSRYSRQLMEDFAEEQKLGNYTINIY
NDDSEEEGILHYARDIQADLICVPTHGRTGLSHLIGGSIAESVSEHAYRPVLTYKIKP
VKIEYGVIGPFRK"
misc_feature complement(282086..282493)
/locus_tag="Cphamn1_0289"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(282122..282133,282161..282166,
282170..282175,282389..282391,282473..282481))
/locus_tag="Cphamn1_0289"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
misc_feature complement(281690..281989)
/locus_tag="Cphamn1_0289"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature complement(order(281726..281737,281765..281770,
281774..281779,281945..281947))
/locus_tag="Cphamn1_0289"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 282921..283532
/locus_tag="Cphamn1_0290"
/db_xref="GeneID:6373945"
CDS 282921..283532
/locus_tag="Cphamn1_0290"
/note="TIGRFAM: phosphoheptose isomerase;
KEGG: plt:Plut_1990 phosphoheptose isomerase"
/codon_start=1
/transl_table=11
/product="phosphoheptose isomerase"
/protein_id="YP_001958740.1"
/db_xref="GI:189499270"
/db_xref="InterPro:IPR004515"
/db_xref="GeneID:6373945"
/translation="MGAEASDRELTDHARAVLLQSARLKQKVAETQCPVLVDMAQVIA
GSFTAGGKLLICGNGGSAADAQHLATELTIRYRSAVVRKALPAIALSADTCALTAGAN
DLGYDTVFARLVEAYGKEGDVVLGISTSGNSRSVFNALQQGRSLGLHTLGLLGGDGGV
IREVSDRSVVVPYAGGADRVQECHIAIGHVIIDCIEQIMGYCG"
misc_feature 282978..283511
/locus_tag="Cphamn1_0290"
/note="Phosphoheptose isomerase is a member of the SIS
(Sugar ISomerase) superfamily. Phosphoheptose isomerase
catalyzes the isomerization of sedoheptulose 7-phosphate
into D-glycero-D-mannoheptose 7-phosphate. This is the
first step of the biosynthesis of...; Region: SIS_GmhA;
cd05006"
/db_xref="CDD:240139"
misc_feature order(282981..282983,282993..282995,283029..283031,
283038..283040,283098..283100,283116..283121,
283461..283466,283476..283478,283485..283487,
283497..283499,283509..283511)
/locus_tag="Cphamn1_0290"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240139"
misc_feature order(283092..283100,283302..283310,283317..283319,
283449..283451,283461..283463)
/locus_tag="Cphamn1_0290"
/note="active site"
/db_xref="CDD:240139"
gene 283570..284037
/gene="ribH"
/locus_tag="Cphamn1_0291"
/db_xref="GeneID:6373946"
CDS 283570..284037
/gene="ribH"
/locus_tag="Cphamn1_0291"
/EC_number="2.5.1.9"
/note="RibE; 6,7-diimethyl-8-ribityllumazine synthase;
DMRL synthase; lumazine synthase; beta subunit of
riboflavin synthase; condenses
5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione
with L-3,4-dihydrohy-2-butanone-4-phosphate to generate
6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then
uses 2 molecules of DMRL to produce riboflavin (vitamin
B12); involved in the last steps of riboflavin
biosynthesis; forms a 60mer (icosahedral shell) in both
Bacillus subtilis and Escherichia coli; in Bacillus
subtilis this 60mer is associated with the riboflavin
synthase subunit (alpha) while in Escherichia coli it is
not"
/codon_start=1
/transl_table=11
/product="6,7-dimethyl-8-ribityllumazine synthase"
/protein_id="YP_001958741.1"
/db_xref="GI:189499271"
/db_xref="InterPro:IPR002180"
/db_xref="GeneID:6373946"
/translation="MSIKTIEGTLEATNLKFALVVSRFNDFIGQKLVEGAVDCIVRHG
GSEENIAVYKCPGAFELPAVAKKAALTGRYDAVITLGAIIRGSTSHYDVIAAEATKGV
AQAGLETMIPITFGVLTTENLEQAIERAGTKAGNKGFDAALAAIEMVNLYRQV"
misc_feature 283618..284016
/gene="ribH"
/locus_tag="Cphamn1_0291"
/note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
synthase, LS), catalyzes the penultimate step in the
biosynthesis of riboflavin (vitamin B2); type-I; Region:
Lumazine_synthase-I; cd09209"
/db_xref="CDD:187742"
misc_feature order(283621..283623,283639..283641,283726..283737,
283744..283749,283753..283761,283765..283773,
283777..283779,283789..283791,283822..283824,
283828..283833,283837..283839,283843..283848,
283852..283860,283864..283872,283876..283890,
283897..283902,283912..283914,283918..283920,
283924..283926,283930..283932,283942..283944,
283954..283956,283978..283980,283987..283989,
283999..284001,284008..284013)
/gene="ribH"
/locus_tag="Cphamn1_0291"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187742"
misc_feature order(283639..283644,283738..283749,283810..283827,
283831..283833,283837..283842,283909..283923,
283954..283956,283978..283980,283987..283989)
/gene="ribH"
/locus_tag="Cphamn1_0291"
/note="active site"
/db_xref="CDD:187742"
gene 284146..284625
/locus_tag="Cphamn1_0292"
/db_xref="GeneID:6373947"
CDS 284146..284625
/locus_tag="Cphamn1_0292"
/note="KEGG: rso:RSc0451 probable transmembrane protein"
/codon_start=1
/transl_table=11
/product="transmembrane protein"
/protein_id="YP_001958742.1"
/db_xref="GI:189499272"
/db_xref="GeneID:6373947"
/translation="MMKTTHTRTILAGIAGGVSMNVVMLLTFRLLGFGWNGGGILLES
PVQSEKLIAVWTQIEPIPLVVHAPAPIIAGIVIFGIVNAYVFRSIASAWPPGILSRGL
RFSVLVFSMTFLFWEFFTPFNMFGEPLQLIALELVFWACIALADGIVIAAAIDRRQT"
gene 284622..285632
/locus_tag="Cphamn1_0293"
/db_xref="GeneID:6373948"
CDS 284622..285632
/locus_tag="Cphamn1_0293"
/note="TIGRFAM: alkylhydroperoxidase like protein, AhpD
family;
PFAM: Carboxymuconolactone decarboxylase;
KEGG: stp:Strop_2703 alkylhydroperoxidase like protein,
AhpD family"
/codon_start=1
/transl_table=11
/product="alkylhydroperoxidase"
/protein_id="YP_001958743.1"
/db_xref="GI:189499273"
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR003779"
/db_xref="InterPro:IPR004675"
/db_xref="InterPro:IPR011767"
/db_xref="GeneID:6373948"
/translation="MTIRYFKAAGGGQKNDLAERTLMHINSEFGARVEPFTLHLPQPE
LLAGVWMICRESLLVGSVRRDLKEAVATTVSVINRCPYCVDAHGIMILGASGKSYAEA
ITAGTYDAIDDKDVRKAVEWAAATLLPGSSILADPPFSPDEAPEYIGTAVCFHYINRM
VTILLGPTPLPFGKGALKRVSMRLASWFFGRSIRVYKEPCASLELLPRATLPGDLGWA
SASACIAHAYAAFSGTVERAGEKVLTEQVRESISKVVKAWNGKDPGMGRAWIEESLGA
CTGGQRAAGELALLAALAPYLVTPAEVSSFSAYYPGDRELLAVLAWGSFTAARRAGGW
MS"
misc_feature 284721..285134
/locus_tag="Cphamn1_0293"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2128"
/db_xref="CDD:225039"
misc_feature 284799..>284885
/locus_tag="Cphamn1_0293"
/note="alkylhydroperoxidase AhpD family core domain;
Region: ahpD_dom; TIGR00778"
/db_xref="CDD:213559"
gene complement(285629..286339)
/locus_tag="Cphamn1_0294"
/db_xref="GeneID:6373949"
CDS complement(285629..286339)
/locus_tag="Cphamn1_0294"
/EC_number="2.3.1.51"
/note="KEGG: cte:CT2036 1-acyl-sn-glycerol-3-phosphate
acyltransferase;
TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase;
PFAM: phospholipid/glycerol acyltransferase"
/codon_start=1
/transl_table=11
/product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
/protein_id="YP_001958744.1"
/db_xref="GI:189499274"
/db_xref="InterPro:IPR002123"
/db_xref="InterPro:IPR004552"
/db_xref="GeneID:6373949"
/translation="MTLQTLLFFLVVLPVMFFGLLIGLVVNIIDPSGDGFHRMAAWWG
RFCRKLMGITVEITGGENYDPNSNYLIMSNHAGMADIPLILGSIHLNMRFVAKEELGK
IPIFGWAIKRGGYVLIKRGQNREALKSLLMASEVLKTGRSVHIFPEGTRSETGKILPF
KRGAFMIAQKAHAPILPVTIIGSNRITPKKSLRIRKSRVQIIISEPIEARGKKAQELQ
DAAYTAITGNMKKYGAAG"
misc_feature complement(285686..286234)
/locus_tag="Cphamn1_0294"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:223282"
misc_feature complement(285674..286207)
/locus_tag="Cphamn1_0294"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(285887..285895,286043..286054,
286100..286102,286106..286108,286115..286117))
/locus_tag="Cphamn1_0294"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene complement(286427..287746)
/locus_tag="Cphamn1_0295"
/db_xref="GeneID:6373950"
CDS complement(286427..287746)
/locus_tag="Cphamn1_0295"
/EC_number="4.2.3.1"
/note="catalyzes the formation of L-threonine from
O-phospho-L-homoserine"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_001958745.1"
/db_xref="GI:189499275"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR004450"
/db_xref="GeneID:6373950"
/translation="MIFYSTNKQSTPASLKKATLEGLASDGGLYIPSAIPTFSKEEIA
LLEDAPFNDIAFAIAKKFNGGEIPDDHLWQIIESCFTFNTPLVELEKNTYVEELFHGP
TLAFKDYGARFLAHLTGYFAQEDHTLITILVATSGDTGSAVAYGFKGVPNTRVVLLYP
SGKVSRLQEQQLTTVGGNVTALEIYGDFDDCQRLVKQAFMDAELKQRLSLTSANSINI
SRLIPQTFYYAWGSLQLKARHPGKEALFSVPSGNYGNLTAGVLAKKMGFPIAHFIAGS
NANDSVTRYLEEGRYEPHPTIGTLSSAMDVGNPSNFARLRHIYGDDYRAMAADISGHA
ISDTETLDTIRTVYDRFGYIMDPHTAVGFRALEKFRQANGASTEPAAIMSTAHPAKFI
EAIKEALDRDITIPDRLQAVLDRKKIAIPISADYRELTEFLTGLDDR"
misc_feature complement(286487..287746)
/locus_tag="Cphamn1_0295"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:223572"
misc_feature complement(286451..287740)
/locus_tag="Cphamn1_0295"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants; Region: Thr-synth_2;
cd01560"
/db_xref="CDD:107203"
misc_feature complement(order(286592..286594,286991..286996,
287426..287428))
/locus_tag="Cphamn1_0295"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature complement(287426..287428)
/locus_tag="Cphamn1_0295"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene complement(287758..288720)
/locus_tag="Cphamn1_0296"
/db_xref="GeneID:6373951"
CDS complement(287758..288720)
/locus_tag="Cphamn1_0296"
/note="catalyzes the formation of O-phospho-L-homoserine
from L-homoserine in threonine biosynthesis from asparate"
/codon_start=1
/transl_table=11
/product="homoserine kinase"
/protein_id="YP_001958746.1"
/db_xref="GI:189499276"
/db_xref="InterPro:IPR000870"
/db_xref="InterPro:IPR001174"
/db_xref="InterPro:IPR006203"
/db_xref="InterPro:IPR006204"
/db_xref="InterPro:IPR013750"
/db_xref="GeneID:6373951"
/translation="MKTVTGFASATIGNVACGFDVLGFAITEPGDEVILTLREERSGE
LPVSITSITGDGGALPRNPKKNTSSFVVLKFLEYIRTNKGIDFEGHIELELKKNLPLS
SGMGSSAASAAAALVAANELMGRPCNKMELVNFAIEGERVACGSAHADNAAPAMLGNF
VLIRSYNPIDLITIPSPDNLYCTLVHPHIEVRTAYARSVLPRMISLKTATEQWGNVGA
LISGLLTSDYELIGRSLVDVIAEPKRAPLIPGFYDVKHAALEAGAIGCSIAGSGPSIF
AFSSSPETASRVGEAMQTAFSTLKEKLQSDIWISPVCKQGAKVI"
misc_feature complement(287761..288720)
/locus_tag="Cphamn1_0296"
/note="homoserine kinase; Provisional; Region: PRK01212"
/db_xref="CDD:234920"
misc_feature complement(288247..288447)
/locus_tag="Cphamn1_0296"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:215839"
gene 288943..290523
/locus_tag="Cphamn1_0297"
/db_xref="GeneID:6373952"
CDS 288943..290523
/locus_tag="Cphamn1_0297"
/EC_number="3.6.3.14"
/note="produces ATP from ADP in the presence of a proton
gradient across the membrane; the alpha chain is a
catalytic subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit alpha"
/protein_id="YP_001958747.1"
/db_xref="GI:189499277"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR000793"
/db_xref="InterPro:IPR004100"
/db_xref="InterPro:IPR005294"
/db_xref="GeneID:6373952"
/translation="MSTTVRPDEVSAILRKHLAGFESEADVYDVGTVLQVGDGIARIY
GLSKVAAGELLEFPDNVMGMALNLEEDNVGAVMFGKSTAVKEGDTVKRTGILASIPVG
EAMLGRVINPLGEPIDGKGPIETSIRLPLERKAPGVIFRKSVNQPLQTGLKAIDAMIP
IGRGQRELIIGDRQTGKTAVAIDTIINQKGKDVFCIYVAIGQKGSTIAQVVSTLEKYG
AMEYTTVIASSASDPAPMQFIAPYAGAAIGEFFRDTGRHALVIYDDLSKQAVAYRQLS
LLLRRPPGREAYPGDVFYLHSRLLERAAKITDDLETAKKMNDLPEPLKPMVKAGGSLT
ALPVIETQAGDVSAYIPTNVISITDGQIFLEPNLFNAGQRPAINVGISVSRVGGSAQI
KAMKKITGTLRLDLAQFRELEAFSKFGSDLDKATKAQLDRGARLVEILKQDQYVPMAV
EKQVAIIFAGTQGVLDQLDLQYIRRFEEEFLSLLEHKHSDILNSIAETGQMDVDVAKR
LKEVAEQFMSTFKQKVTA"
misc_feature 288952..290505
/locus_tag="Cphamn1_0297"
/note="F0F1 ATP synthase subunit alpha; Validated; Region:
PRK09281"
/db_xref="CDD:236448"
misc_feature 289030..289224
/locus_tag="Cphamn1_0297"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:217261"
misc_feature 289228..290103
/locus_tag="Cphamn1_0297"
/note="F1 ATP synthase alpha, central domain. The F-ATPase
is found in bacterial plasma membranes, mitochondrial
inner membranes and in chloroplast thylakoid membranes. It
has also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to...; Region: F1_ATPase_alpha;
cd01132"
/db_xref="CDD:238552"
misc_feature order(289291..289296,289342..289347,289351..289356,
289363..289365,289369..289371,289459..289464,
289549..289560,289564..289569,289576..289578,
289759..289764,289780..289788,289792..289797,
289810..289812,289822..289824,289831..289833,
289843..289845,290008..290010,290017..290019,
290050..290055,290062..290064,290095..290097)
/locus_tag="Cphamn1_0297"
/note="beta subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:238552"
misc_feature 289453..289476
/locus_tag="Cphamn1_0297"
/note="Walker A motif; other site"
/db_xref="CDD:238552"
misc_feature order(289459..289461,289471..289479,289531..289533,
289546..289548,289729..289734,289741..289743,
289960..289962,290008..290010,290047..290049,
290062..290067,290095..290097)
/locus_tag="Cphamn1_0297"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238552"
misc_feature 289717..289731
/locus_tag="Cphamn1_0297"
/note="Walker B motif; other site"
/db_xref="CDD:238552"
misc_feature 290128..>290316
/locus_tag="Cphamn1_0297"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:215848"
gene 290569..291456
/locus_tag="Cphamn1_0298"
/db_xref="GeneID:6373953"
CDS 290569..291456
/locus_tag="Cphamn1_0298"
/EC_number="3.6.3.14"
/note="produces ATP from ADP in the presence of a proton
gradient across the membrane; the gamma chain is a
regulatory subunit"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit gamma"
/protein_id="YP_001958748.1"
/db_xref="GI:189499278"
/db_xref="InterPro:IPR000131"
/db_xref="GeneID:6373953"
/translation="MATLKDIRTRIQSIASTQQVTKAMKMVSAAKLRRAQDSAIQARP
YAAKLKEMLGSLSTRVDTTLNPLLSDRDEVKNVLVVVITSDRGLCGAFNANIIKIAQK
VVTEEHGDLYRDGKVEMLCAGSKGNDYFRKRGFSISKAYPGLFQNLHFSVAREIAEYA
SERYLKGEVDKVVVVYNEFKSVLAPVLKSEVLLPITPEKVEGEKTGSSIDYIYEPSPS
AIIDVLVPKHLNTQIWRMMLESNAAEHASRMTAMDSATENAKELMRVLKISYNRARQA
AITTELSEIVAGAEALQGE"
misc_feature 290572..291435
/locus_tag="Cphamn1_0298"
/note="mitochondrial ATP synthase gamma subunit; Region:
F1-ATPase_gamma; cd12151"
/db_xref="CDD:213394"
misc_feature order(290581..290583,290596..290598,290614..290616,
290626..290628,290635..290640,290644..290649,
290656..290661,290824..290826,290830..290841,
290938..290943,290950..290955,290962..290964,
291331..291333,291340..291345,291352..291354,
291370..291372,291379..291384,291388..291393,
291400..291405,291412..291414,291418..291435)
/locus_tag="Cphamn1_0298"
/note="core domain interface [polypeptide binding]; other
site"
/db_xref="CDD:213394"
misc_feature order(290689..290694,290698..290703,290710..290712,
290719..290724,291226..291228,291235..291240,
291247..291249)
/locus_tag="Cphamn1_0298"
/note="delta subunit interface [polypeptide binding];
other site"
/db_xref="CDD:213394"
misc_feature order(290947..290949,290980..290997,291235..291237,
291244..291249)
/locus_tag="Cphamn1_0298"
/note="epsilon subunit interface [polypeptide binding];
other site"
/db_xref="CDD:213394"
gene 291552..294011
/gene="thrA"
/locus_tag="Cphamn1_0299"
/db_xref="GeneID:6373954"
CDS 291552..294011
/gene="thrA"
/locus_tag="Cphamn1_0299"
/EC_number="1.1.1.3"
/EC_number="2.7.2.4"
/note="multifunctional homotetrameric enzyme that
catalyzes the phosphorylation of aspartate to form
aspartyl-4-phosphate as well as conversion of aspartate
semialdehyde to homoserine; functions in a number of amino
acid biosynthetic pathways"
/codon_start=1
/transl_table=11
/product="bifunctional aspartokinase I/homoserine
dehydrogenase I"
/protein_id="YP_001958749.1"
/db_xref="GI:189499279"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001341"
/db_xref="InterPro:IPR001342"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR003006"
/db_xref="InterPro:IPR005106"
/db_xref="GeneID:6373954"
/translation="MKVLKFGGTSIENSERIRNVLGIIRGAIKDSPVIIVVSAIRKVT
DLLLEAAVAAGSGDAGYREKLVTIENIHGDLVRDLIDLSRRNEVQEVLTDELQELGDI
LYGVSLLRDLSDRSKALILSFGERFSARIISTFFCQEGLDASYTDARKLIVTDTNHCD
ARVDMSASSELISAWFKEERGVPVVTGYIGAAPDGTATTLGRGGSDYTATILGSVAGA
DEIQIWTDVDGFFSADPKRVKDAYVLPFISYGEAMELSHSGAKVLHPYSVHPAMKKGI
PITIRNSYNPDVEGTRISAPEGNDTGSGKPVTGLSSINDVVLLNFSGSGMVGVPGIAS
RLFSCLARHKINIIFISQASSEQSISLAINLVQAEKARLLLEQEFAAELAVRQIESLT
FRKHIAIIAVVGKQMPGHPGVSAHLFETLGKNGINVIAVAQGANEMNISFVIDSHDED
KALHCVHESFLLSRRKVHVFIAGTGTIAKSLIGQIRDHSLTLRKEKELDVVVSGMANT
RMHVSDDAGIDLSRWESGLKPRTDGKTVSDYVDYIKSRNLHNTIFVDCTASAEVAACY
PDLLASNISVVTANKLGTAGSWELYETISEALHASNARFLYETNVGAGLPIINTLNDL
RNSGDRIVRIEGVLSGTLSYIFNELRKGRKFSEIVRSARDAGYTEPDPREDLSGADFA
RKFLILGRELGYRLDYEDIECESLVPESLRGEMSVEEFMERLGGIDAAYQTRISEAAE
TGMTIAYAGEISEGKARIGVKTLPVSNPVAGLNGTENLVVFTTDRYLDTPLVVKGPGA
GGEVTAGGVFADILRIASYLI"
misc_feature 291552..294005
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional; Region: thrA; PRK09436"
/db_xref="CDD:181856"
misc_feature 291552..292433
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK),
AK-HSDH; this CD includes the N-terminal catalytic domain
of aspartokinase (AK) of the bifunctional enzyme AK -
homoserine dehydrogenase (HSDH). These aspartokinases are
found in bacteria (E. coli...; Region: AAK_AK-HSDH;
cd04257"
/db_xref="CDD:239790"
misc_feature order(291564..291566,291681..291683,291924..291926,
292167..292169,292302..292304,292341..292343)
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="putative catalytic residues [active]"
/db_xref="CDD:239790"
misc_feature order(291564..291566,291570..291578,292227..292232,
292239..292244)
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:239790"
misc_feature order(291663..291668,291681..291683,291924..291926)
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:239790"
misc_feature 292497..292736
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="ACT domains of the bifunctional enzyme
aspartokinase (AK) - homoserine dehydrogenase (HSDH);
Region: ACT_AKi-HSDH-ThrA-like_1; cd04921"
/db_xref="CDD:153193"
misc_feature order(292521..292529,292536..292541,292551..292553,
292560..292565,292584..292586,292590..292610,
292614..292619,292623..292625,292629..292631)
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153193"
misc_feature 292605..292607
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="putative threonine allosteric regulatory site;
other site"
/db_xref="CDD:153193"
misc_feature 292740..292937
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="ACT domains of the bifunctional enzyme
aspartokinase (AK) - homoserine dehydrogenase (HSDH);
Region: ACT_AKi-HSDH-ThrA_2; cd04922"
/db_xref="CDD:153194"
misc_feature 292848..292850
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="putative threonine allosteric regulatory site;
other site"
/db_xref="CDD:153194"
misc_feature 292968..293375
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="Homoserine dehydrogenase, NAD binding domain;
Region: NAD_binding_3; pfam03447"
/db_xref="CDD:217564"
misc_feature 293397..293984
/gene="thrA"
/locus_tag="Cphamn1_0299"
/note="Homoserine dehydrogenase; Region: Homoserine_dh;
pfam00742"
/db_xref="CDD:216092"
gene 294021..295283
/locus_tag="Cphamn1_0300"
/db_xref="GeneID:6373955"
CDS 294021..295283
/locus_tag="Cphamn1_0300"
/note="TIGRFAM: competence/damage-inducible protein CinA;
PFAM: molybdopterin binding domain; CinA domain protein;
KEGG: cte:CT2029 competence/damage-inducible protein CinA"
/codon_start=1
/transl_table=11
/product="competence/damage-inducible protein CinA"
/protein_id="YP_001958750.1"
/db_xref="GI:189499280"
/db_xref="InterPro:IPR001453"
/db_xref="InterPro:IPR008135"
/db_xref="InterPro:IPR008136"
/db_xref="GeneID:6373955"
/translation="MFAEIISIGDELLTGQKVNTNAGFICSELAGAGIPVQRIIACAD
NVDAIQEQFRESLERAMLVIVTGGLGPTRDDMTKQSAQQFLNRELVVDRQTYERTLDR
YKLLGKKPVSSLCENAMVIGDSVVVQNDEGLAPGMIIACEERFQGHYLVLLPGVPREM
KSMMRNSVLPYFSGLCGTVIVHSHIKTTGIGEASLAKIIVEIENTLPDGTSLAYLPHT
AGVSLRVSSVGTDRSSVEHDNREITDAIVSAARHFVYATSDISLEELVGSLLLKEGVT
IATAESCTGGLIAGRLTDVPGSSGYFEQGFVVYSNASKEKNLGVRRETIETCGAVSEE
VAAEMAEGCLQRSGVHMAVSSTGIAGPDGGTELKPAGMVCLGLAIRKEGEGVRTETET
FVTRGDRLQNKLRFSEAALRMVWKALRS"
misc_feature 294021..295274
/locus_tag="Cphamn1_0300"
/note="competence damage-inducible protein A; Provisional;
Region: PRK00549"
/db_xref="CDD:234789"
misc_feature 294027..294545
/locus_tag="Cphamn1_0300"
/note="Competence-damaged protein. CinA is the first gene
in the competence- inducible (cin) operon and is thought
to be specifically required at some stage in the process
of transformation. This domain is closely related to a
domain, found in a variety of...; Region: cinA; cd00885"
/db_xref="CDD:238450"
misc_feature order(294222..294230,294480..294485,294495..294497,
294504..294506)
/locus_tag="Cphamn1_0300"
/note="putative MPT binding site; other site"
/db_xref="CDD:238450"
misc_feature 294795..295274
/locus_tag="Cphamn1_0300"
/note="Competence-damaged protein; Region: CinA;
pfam02464"
/db_xref="CDD:145546"
gene complement(295273..295803)
/locus_tag="Cphamn1_0301"
/db_xref="GeneID:6373956"
CDS complement(295273..295803)
/locus_tag="Cphamn1_0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958751.1"
/db_xref="GI:189499281"
/db_xref="GeneID:6373956"
/translation="MNRKRTIIALLLAVALSGAVGIAALNRNTASDPPQVTSTKKGKG
TLSGSEKLIGKWQLVTASVTPDFLKVPIPINTIDARGTVTDDYTYTISANGSFFGSNY
GYLGSGDIDVEGASLTLTINDGVITVNEKKKRQDKKGGTISGSYRMSGKDTLQVEAVK
YQDGIGYTFHLELVNS"
sig_peptide complement(295732..295803)
/locus_tag="Cphamn1_0301"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.352 at
residue 24"
gene 296357..298231
/locus_tag="Cphamn1_0302"
/db_xref="GeneID:6373957"
CDS 296357..298231
/locus_tag="Cphamn1_0302"
/note="TIGRFAM: DNA mismatch repair protein MutL;
PFAM: ATP-binding region ATPase domain protein; DNA
mismatch repair protein domain protein; MutL dimerisation;
KEGG: plt:Plut_1981 DNA mismatch repair protein"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutL"
/protein_id="YP_001958752.1"
/db_xref="GI:189499282"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR013507"
/db_xref="InterPro:IPR014762"
/db_xref="InterPro:IPR014763"
/db_xref="InterPro:IPR014790"
/db_xref="GeneID:6373957"
/translation="MPRIARLPDIVANKISAGEVVQRPASVVKELLENAIDAGATRIT
VAIKDAGKELVQVIDNGSGMDEEDALRCVERFATSKISDAEELDALTTLGFRGEALAS
ISTVSHFELRTRRENDNVGIQLRYEGGVLSERGKAASEPGTAVSVRNLFYNVPARRKF
LKSNATEFKHIFESVKAQVLAYPEIQWQMINDDETLFDFRSSDMHERLNFFFGDDFAG
SLIEVHDDNDFLSLHGYVGKPSMQKRQKNEQFIYLNRRVIQNRMLSQALQQAYGELLV
ERHSPFVLLFLGIDPQQTDVNVHPAKLEVKFEDERSVRTMFYTIIKRSVRMQDFSPDV
GGEGFHETSDSFSSRSSQHSDARLGFQAVPSRASSTDDLYREFQESTPKRPMPDRTRV
SEQEEMFSHSADIFCEPDREFRSSDFGQVSEEFVDGVRLEPEEKDPKIWQLHNKYIIC
QIKTGLMLIDQHVAHERVLYERAVDIMDNNVPNAQQLLFPQKVELKPWEFEIYLEICD
DLDRLGFNLGTLGTRTVMIEGVPQDVRSGSEAYILQDMIQEYQQNASKLKLEKRENLA
KSYSCRNAIMSGQALSLEDMRSLIDRLFATKMPYVCPHGRPVIIRISLDQLDRMFGRK
"
misc_feature 296360..298225
/locus_tag="Cphamn1_0302"
/note="DNA mismatch repair protein; Reviewed; Region:
mutL; PRK00095"
/db_xref="CDD:234630"
misc_feature 296426..>296677
/locus_tag="Cphamn1_0302"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature order(296444..296446,296456..296458,296465..296467,
296525..296527,296531..296533,296537..296539,
296543..296548,296645..296656)
/locus_tag="Cphamn1_0302"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature 296456..296458
/locus_tag="Cphamn1_0302"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature order(296537..296539,296543..296545,296645..296647,
296651..296653)
/locus_tag="Cphamn1_0302"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature 296966..297325
/locus_tag="Cphamn1_0302"
/note="MutL_Trans: transducer domain, having a ribosomal
S5 domain 2-like fold, conserved in the C-terminal domain
of DNA mismatch repair (MutL/MLH1/PMS2) family. This
transducer domain is homologous to the second domain of
the DNA gyrase B subunit, which is...; Region: MutL_Trans;
cd00782"
/db_xref="CDD:238405"
misc_feature 297260..297262
/locus_tag="Cphamn1_0302"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238405"
misc_feature 297680..298099
/locus_tag="Cphamn1_0302"
/note="MutL C terminal dimerisation domain; Region:
MutL_C; pfam08676"
/db_xref="CDD:219965"
gene 298272..298347
/locus_tag="Cphamn1_R0014"
/note="tRNA-Arg1"
/db_xref="GeneID:6373958"
tRNA 298272..298347
/locus_tag="Cphamn1_R0014"
/product="tRNA-Arg"
/db_xref="GeneID:6373958"
gene complement(298465..298995)
/locus_tag="Cphamn1_0303"
/db_xref="GeneID:6373959"
CDS complement(298465..298995)
/locus_tag="Cphamn1_0303"
/note="KEGG: pvi:Cvib_1623 cytochrome c, class I"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958753.1"
/db_xref="GI:189499283"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:6373959"
/translation="MKRFFLPFALSALLIASATTFSACQQQTGSVNEQQQESAVTTDV
PAETSTGDVAEEKSEAIAKKEAAQAAAEKAEAIYHKSCSSCHSLTPPAKSAPPIIAIA
GQYRARYGKKSGAVADMVSFMKEPSIGKSVFGSKTFERFGIMPVMSLPDKELEMVSEW
LWDQYDPNFEGDADCQ"
sig_peptide complement(298918..298995)
/locus_tag="Cphamn1_0303"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.524 at
residue 26"
gene complement(299323..300093)
/gene="dapF"
/locus_tag="Cphamn1_0304"
/db_xref="GeneID:6373960"
CDS complement(299323..300093)
/gene="dapF"
/locus_tag="Cphamn1_0304"
/EC_number="5.1.1.7"
/note="involved in lysine biosynthesis; DAP epimerase;
produces DL-diaminopimelate from LL-diaminopimelate"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase"
/protein_id="YP_001958754.1"
/db_xref="GI:189499284"
/db_xref="InterPro:IPR001653"
/db_xref="GeneID:6373960"
/translation="MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVE
PSETYDFSMRYFNADGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTG
VERVKLKMTEPDTFRDDIHANGLNCHFVNTGSPHTIIYTGELETFNVHDTGYAVRNNN
SLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTSV
SVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSVT"
misc_feature complement(299332..300093)
/gene="dapF"
/locus_tag="Cphamn1_0304"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:234768"
misc_feature complement(<299839..300093)
/gene="dapF"
/locus_tag="Cphamn1_0304"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
misc_feature complement(299350..299709)
/gene="dapF"
/locus_tag="Cphamn1_0304"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:216645"
gene 300524..302725
/locus_tag="Cphamn1_0305"
/db_xref="GeneID:6373961"
CDS 300524..302725
/locus_tag="Cphamn1_0305"
/note="KEGG: plt:Plut_1976 photosystem P840 reaction
center, large subunit"
/codon_start=1
/transl_table=11
/product="photosystem P840 reaction center, large subunit"
/protein_id="YP_001958755.1"
/db_xref="GI:189499285"
/db_xref="InterPro:IPR001280"
/db_xref="GeneID:6373961"
/translation="MADQANPTGVKPKGQVPPPKGKVPPPKGNGAPAGGASIIKEKDA
AKMRRFLFQRTETRSTKWYQVFDTDKVDDEQVVGGHLALLGVLGFIMGIYYLSGMQVL
PWNGAPAFHDNWFYLTIKPRMVSLGIDTYSPRTEDLIAASWKLMGWAILHFVSGSILL
FGGWRHWTHNLTNPFTGRAGNFREFRFLGKFGDAVFQGTSAKTYKDALGPHAVYMSLL
FLGWGLMLWIVLGFAPIPDFQTINSEVFMSFVWFLVFFALGLYWWKNPPNAAIHLNDD
MKAAFSVHLTAIGYVNIALGIIAFVAFQQDSFAPYYAELDKLVFYIYGEPFNRVSFDF
VEQGGKVLSGSKEFAEFPAFAILPKNGESFGMARVVINLIVFNHIICGVLYVFAGVYH
GGQYLLKVQINGLYSQIKSIWVAKGRDQELQVKILGTIMALCFATMLSVYAVIVWNTI
CELNFFGTNIMMSFYWLKPLPFLHWMFEDPSINDWVMAHVIVAGSLFSLIALARIAFF
SHTSPLWDDLGLKKNSYSFPCLGPVYGGTCGVSIQDQLWFAMLWGVKGLSAVCWYIDG
AWIASMMYGVPAADAKAWDAVAGLSHHYSAGIFYYFWTETVTIFSSSHLSVILMIGHL
VWFISFAVWFEDRGSRLEGADVQTRTIRWLGKKFLNRDVQFRFPVLTISDSKLAGTFL
YFGGTFMLVFLFIANGFYQTNTPALPPVGDAAVSGQQLLTQVVDFIMKLIA"
misc_feature <301973..302437
/locus_tag="Cphamn1_0305"
/note="Photosystem I psaA/psaB protein; Region: PsaA_PsaB;
cl08224"
/db_xref="CDD:244868"
gene 302827..303525
/locus_tag="Cphamn1_0306"
/db_xref="GeneID:6373962"
CDS 302827..303525
/locus_tag="Cphamn1_0306"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein;
KEGG: plt:Plut_1975 photosystem P840 reaction center
iron-sulfur protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_001958756.1"
/db_xref="GI:189499286"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:6373962"
/translation="MADPVKQQGTEPAPAKAKPPAPKAKGGAPKGKPAPEAKQAAAPK
GAGATPVAKNRLNDLDVNLGRTGRRMESALPSVKPKPKPSAKPKPAAKGAPAAKGAPK
AKGAPKAKGAPAAKGAAPRPAAKKAPRAKKHYFILENLCVGCGLCLDKCPPKVNAIGY
KFYGDVQEGGFRCYIDQDACISCSACFSSDECPSGALLEILPDGETLDFTYTPPERLD
FDLRFLHRFHKENR"
misc_feature 303229..303405
/locus_tag="Cphamn1_0306"
/note="4Fe-4S dicluster domain; Region: Fer4_10;
pfam13237"
/db_xref="CDD:205417"
gene 303613..304359
/locus_tag="Cphamn1_0307"
/db_xref="GeneID:6373963"
CDS 303613..304359
/locus_tag="Cphamn1_0307"
/EC_number="2.4.1.83"
/note="PFAM: glycosyl transferase family 2;
KEGG: plt:Plut_1974 dolichyl-phosphate
beta-D-mannosyltransferase"
/codon_start=1
/transl_table=11
/product="dolichyl-phosphate beta-D-mannosyltransferase"
/protein_id="YP_001958757.1"
/db_xref="GI:189499287"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:6373963"
/translation="MSASTSCTERSLVIIPTYNESENISKLLEDIFSLYRECVDVLII
DDNSPDGTAELVKEIQLVHKTLYLHERPSKMGLGTAYIEGFRYAIKHGYQRIIEMDAD
YSHDPAVIGRMIEQSETADLVIGSRYIGNTVNVVNWPLSRLVLSKTASVYTRLITGMP
VADPTSGYKCFRSRVLQEIDLDRVQSQGYSFQIEMNFRVWKKGFSIVETPIIFIDRAV
GKSKMTRKNIVEAIWIVWWLKIKSVFGTLQ"
misc_feature 303613..304302
/locus_tag="Cphamn1_0307"
/note="dolichyl-phosphate beta-D-mannosyltransferase;
Region: PLN02726"
/db_xref="CDD:215385"
misc_feature 303649..304326
/locus_tag="Cphamn1_0307"
/note="DPM1_like represents putative enzymes similar to
eukaryotic DPM1; Region: DPM1_like; cd06442"
/db_xref="CDD:133062"
misc_feature order(303658..303660,303664..303666,303916..303918)
/locus_tag="Cphamn1_0307"
/note="Ligand binding site; other site"
/db_xref="CDD:133062"
misc_feature order(303748..303750,303913..303918)
/locus_tag="Cphamn1_0307"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133062"
misc_feature 303910..303918
/locus_tag="Cphamn1_0307"
/note="DXD motif; other site"
/db_xref="CDD:133062"
gene complement(304440..306521)
/locus_tag="Cphamn1_0308"
/db_xref="GeneID:6373964"
CDS complement(304440..306521)
/locus_tag="Cphamn1_0308"
/note="EF-G; promotes GTP-dependent translocation of the
ribosome during translation; many organisms have multiple
copies of this gene"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_001958758.1"
/db_xref="GI:189499288"
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
/db_xref="GeneID:6373964"
/translation="MQPVQPDQLRNIVITGHSGSGKTILAESLALSMNVTNRLGSIED
GTTLSDYSEDEISRQHSLNSALIQGTWNNRKINIIDTPGLLDFHGDVKSAMRIADTVL
MTVNSSIGVEVGTDIIWDYTKEYYKPTMFALTKLDADRTNYTKTIQELQDHFGSQVTP
IQFPVEEGLGHHVIIDVLLMKQLEFNPDKPGNMSESEIPDLYKKRAEELHFKLVEAVA
ETDEDLMNRYFDIGNLTEDELRAGIKSALLTRTFFPVFCVSPLHLIGSERLLNAIVNI
CPSPIERGPEQAYCASKKDEKLLEPDTEGPTVAFIFKTMSEPRVGEISFLRVYSGHIE
TGHELIDAQTGQLEKIGQVYTMEGQKKVPVEKLLAGDIGMVVKLKDSHTNDTLADKGT
DCRITPIIFPEPLLATAIEPAAQGDEEKISSGLHHLLEEDPSFAIEHDTEFNQTIIKT
LGETHLDAIMNRLESKFGVSVTRSTVKIPYRESIRSSASSQGKYKKQSGGRGQYGDVW
IRIEPTERNSGFSFASEVVGGVVPTRYLPAVEKGLRESVSNGVISGYPVVDLKAVVYD
GSYHPVDSSEFAFKIAANMAFKAAFEKAKPLLLEPYYSLSVKTPEQYTGEIVGEISGK
RGKIIGMDADARFQTINAQIPQSSLRDFHQQLVRLTQSRARYTYAFSHYEEMPHDIAN
QIIAAKAEDKS"
misc_feature complement(305682..306491)
/locus_tag="Cphamn1_0308"
/note="Elongation factor G (EF-G) family; Region:
EF-G_bact; cd04170"
/db_xref="CDD:206733"
misc_feature complement(304464..306476)
/locus_tag="Cphamn1_0308"
/note="elongation factor G; Reviewed; Region: PRK12740"
/db_xref="CDD:237186"
misc_feature complement(306453..306476)
/locus_tag="Cphamn1_0308"
/note="G1 box; other site"
/db_xref="CDD:206733"
misc_feature complement(order(306075..306077,306087..306089,
306195..306200,306267..306272,306324..306329,
306429..306434,306441..306443,306450..306455,
306465..306467,306471..306473))
/locus_tag="Cphamn1_0308"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206733"
misc_feature complement(order(305739..305741,305745..305747,
306108..306113,306117..306119,306273..306275,
306339..306344,306450..306470))
/locus_tag="Cphamn1_0308"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206733"
misc_feature complement(order(306327..306329,306333..306347))
/locus_tag="Cphamn1_0308"
/note="Switch I region; other site"
/db_xref="CDD:206733"
misc_feature complement(306342..306344)
/locus_tag="Cphamn1_0308"
/note="G2 box; other site"
/db_xref="CDD:206733"
misc_feature complement(306273..306284)
/locus_tag="Cphamn1_0308"
/note="G3 box; other site"
/db_xref="CDD:206733"
misc_feature complement(306222..306278)
/locus_tag="Cphamn1_0308"
/note="Switch II region; other site"
/db_xref="CDD:206733"
misc_feature complement(306111..306122)
/locus_tag="Cphamn1_0308"
/note="G4 box; other site"
/db_xref="CDD:206733"
misc_feature complement(305739..305747)
/locus_tag="Cphamn1_0308"
/note="G5 box; other site"
/db_xref="CDD:206733"
misc_feature complement(305355..305603)
/locus_tag="Cphamn1_0308"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature complement(304737..305084)
/locus_tag="Cphamn1_0308"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature complement(304491..304724)
/locus_tag="Cphamn1_0308"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 306772..308085
/gene="eno"
/locus_tag="Cphamn1_0309"
/db_xref="GeneID:6373965"
CDS 306772..308085
/gene="eno"
/locus_tag="Cphamn1_0309"
/EC_number="4.2.1.11"
/note="enolase; catalyzes the formation of
phosphoenolpyruvate from 2-phospho-D-glycerate in
glycolysis"
/codon_start=1
/transl_table=11
/product="phosphopyruvate hydratase"
/protein_id="YP_001958759.1"
/db_xref="GI:189499289"
/db_xref="InterPro:IPR000941"
/db_xref="GeneID:6373965"
/translation="MPLITNVIARQILDSRGNPTVEVDVLTETSYGRAAVPSGASTGV
HEAVELRDGDSGVYLGKSVMKAVMNVNTHINDRLKGMDVTEQVEIDNTLIALDGTANK
SNLGANAILGVSLACAKAAAEYSGLSLFRYIGGTLATTLPVPMMNVLNGGAHADNNVD
FQEFMIMPIGFTTYSDALRCGVEVFHALKALLKKKGLSTAVGDEGGFAPNLGSNEEAI
ELVIEAVGKAGYSVGSPTDRGGIGDAQVMIALDPASSEYYDADRKKYVFKKSSGKELD
ASEMAEYWEKWCSDYPIISIEDAMAEDDWEGWKLLSDKIGSRVQLVGDDLFVTNTRRL
ADGIDKKVGNSILIKVNQIGTLTETLQAIDLAKRNGYTSVISHRSGETEDTTIAQIAV
ATGAGQIKTGSLSRSDRMAKYNELLRIEEELGAEAYYPGVKAFRV"
misc_feature 306772..308079
/gene="eno"
/locus_tag="Cphamn1_0309"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:234617"
misc_feature 306787..308037
/gene="eno"
/locus_tag="Cphamn1_0309"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:239429"
misc_feature order(306793..306795,306799..306825,306835..306837,
306868..306870,307234..307242,307303..307308,
307315..307320,307327..307332,307369..307374,
307393..307395,307399..307401,307912..307920,
307987..307995,307999..308004,308011..308013,
308020..308025,308032..308034)
/gene="eno"
/locus_tag="Cphamn1_0309"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239429"
misc_feature order(306892..306894,307522..307524,307660..307662,
307741..307743)
/gene="eno"
/locus_tag="Cphamn1_0309"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:239429"
misc_feature order(307231..307233,307381..307383,307816..307818,
307900..307908,307969..307971)
/gene="eno"
/locus_tag="Cphamn1_0309"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:239429"
gene 308249..308545
/locus_tag="Cphamn1_0310"
/db_xref="GeneID:6373966"
CDS 308249..308545
/locus_tag="Cphamn1_0310"
/note="PFAM: Septum formation initiator;
KEGG: plt:Plut_1971 hypothetical protein"
/codon_start=1
/transl_table=11
/product="septum formation initiator"
/protein_id="YP_001958760.1"
/db_xref="GI:189499290"
/db_xref="InterPro:IPR007060"
/db_xref="GeneID:6373966"
/translation="MADIWAYILSRPRKIFLLVLAGIFVLWIVFGDYGVVARLRMEAE
HGMLRARQQQEESKIIENTRKIRQVDDPEAIEKIAREKYNFSRDEEILFIIEKK"
misc_feature <308291..308539
/locus_tag="Cphamn1_0310"
/note="Septum formation initiator [Cell division and
chromosome partitioning]; Region: COG2919"
/db_xref="CDD:225471"
misc_feature 308306..308542
/locus_tag="Cphamn1_0310"
/note="Septum formation initiator; Region: DivIC;
pfam04977"
/db_xref="CDD:203138"
gene 308651..310711
/locus_tag="Cphamn1_0311"
/db_xref="GeneID:6373967"
CDS 308651..310711
/locus_tag="Cphamn1_0311"
/EC_number="1.17.7.1"
/note="KEGG: cte:CT0147 GcpE protein;
TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase;
PFAM: IspG family protein"
/codon_start=1
/transl_table=11
/product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase"
/protein_id="YP_001958761.1"
/db_xref="GI:189499291"
/db_xref="InterPro:IPR004588"
/db_xref="GeneID:6373967"
/translation="MQNFPISMYQYSRRLTREVGFGSLSLGGYQPVRVESMTTTHTMD
TSASVEQCRRLHEAGCEIIRLTVPTEKDAENLKTIRDQLRRDGVATPLVADIHFSQKA
ALKAVEFVENVRINPGNFANTQKFTNEEYTAQSYDSELEKVREAFLPLIGKAKAFGVS
MRIGTNHGSLSDRIVSRYGNTPEGMVEAALEFARICEDEGYYDFLFSMKSSNVRVMIQ
AYRHLVARADTELRHAYPLHLGVTEAGDGDEGRIKSAMGTGALLEEGLGDTIRVSLTE
DPVNEVPVGFALVKKYNDLLKVKGEKGHAPVNRIIMSRAARACFELPPFDPFSYRKRK
SGVLSTADGDIGGESLPMVETVTKASVAANPEQLLAELRRRLVVDSADKEIRSELVTV
PAGSAVESEALEPVLAELGVCRSRVGVATGDVSLVPDLLKRAARVRLDIREGEMIDKT
FFDSLDGGGALLEFCFIHEHASEQVPAEVLSRIALKMQSKGIEKLLFSIQSPVPVYAY
RYLVRGFNEQGLDYPLVIRYHALNKGRLETLIDCATQTGTLFCDGIGDMLALETDLAE
SEEISLAFNVLQAARVRMSKTEFISCPGCGRTYFDLEKTTAVIKARMSHLKGLKIGIM
GCIVNGPGEMADADFGYVGSGKSGVSLYVGKECVASNIPEKDAVDRLVDLIRSHGRWV
ERVA"
misc_feature 308678..>309541
/locus_tag="Cphamn1_0311"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:234812"
misc_feature 308696..>309520
/locus_tag="Cphamn1_0311"
/note="GcpE protein; Region: GcpE; pfam04551"
/db_xref="CDD:218143"
misc_feature <310259..310699
/locus_tag="Cphamn1_0311"
/note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated; Region: PRK00694"
/db_xref="CDD:234812"
gene 310730..311515
/locus_tag="Cphamn1_0312"
/db_xref="GeneID:6373968"
CDS 310730..311515
/locus_tag="Cphamn1_0312"
/note="PFAM: short-chain dehydrogenase/reductase SDR; KR
domain protein;
KEGG: plt:Plut_1969 oxidoreductase, short-chain
dehydrogenase/reductase family"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001958762.1"
/db_xref="GI:189499292"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="InterPro:IPR002424"
/db_xref="InterPro:IPR013968"
/db_xref="GeneID:6373968"
/translation="MPYTLITGASNGIGREFAREFARRKSDMVLVARSESSLRNLSAE
LSPAGEPVIHLCIEDLSDPESPRRVHQYCRDRSLGVELIINCAGFGYAGEYDSMPLEA
LQEMIQVNTAAMAVLIRLFLPAMIAEKKGGIINVASIGGFQGISRLGLYSATKSFILT
LSESLHEELKNKGIKVVAVSPGYIETGFHARARQHPECSILPLSSPSVVVKASIKGLI
KNRLHVYPTMTDFMVVFFQRFLPRSAVLKTAAFLAPLKHKGER"
misc_feature 310730..311470
/locus_tag="Cphamn1_0312"
/note="Short-chain dehydrogenases of various substrate
specificities [General function prediction only]; Region:
DltE; COG0300"
/db_xref="CDD:223377"
misc_feature 310742..311320
/locus_tag="Cphamn1_0312"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(310751..310753,310757..310768,310823..310831,
310895..310897,310904..310909,310985..310993,
311054..311056,311135..311143,311180..311182,
311192..311194,311270..311281,311285..311290)
/locus_tag="Cphamn1_0312"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(311057..311059,311141..311143,311180..311182,
311192..311194)
/locus_tag="Cphamn1_0312"
/note="active site"
/db_xref="CDD:212491"
gene 311622..311694
/locus_tag="Cphamn1_R0015"
/note="tRNA-Thr1"
/db_xref="GeneID:6373969"
tRNA 311622..311694
/locus_tag="Cphamn1_R0015"
/product="tRNA-Thr"
/db_xref="GeneID:6373969"
gene 311714..311796
/locus_tag="Cphamn1_R0016"
/note="tRNA-Tyr1"
/db_xref="GeneID:6373970"
tRNA 311714..311796
/locus_tag="Cphamn1_R0016"
/product="tRNA-Tyr"
/db_xref="GeneID:6373970"
gene 311817..311889
/locus_tag="Cphamn1_R0017"
/note="tRNA-Thr2"
/db_xref="GeneID:6373971"
tRNA 311817..311889
/locus_tag="Cphamn1_R0017"
/product="tRNA-Thr"
/db_xref="GeneID:6373971"
gene 311913..311985
/locus_tag="Cphamn1_R0018"
/note="tRNA-Trp1"
/db_xref="GeneID:6373972"
tRNA 311913..311985
/locus_tag="Cphamn1_R0018"
/product="tRNA-Trp"
/db_xref="GeneID:6373972"
gene 312038..312229
/gene="secE"
/locus_tag="Cphamn1_0313"
/db_xref="GeneID:6373973"
CDS 312038..312229
/gene="secE"
/locus_tag="Cphamn1_0313"
/note="forms a complex with SecY and SecG; SecYEG forms a
protein-conducting channel to which secA binds and
translocates targeted polypeptides across the cytoplasmic
membrane, a process driven by ATP and a proton-motive
force"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_001958763.1"
/db_xref="GI:189499293"
/db_xref="InterPro:IPR001901"
/db_xref="InterPro:IPR005807"
/db_xref="GeneID:6373973"
/translation="MTKYLDKVTGYYHDVVNEMKKVAWPSPEDTRDLTVVVLTVSGLL
TLFTFVVDWVINSFIGKLL"
misc_feature 312038..312223
/gene="secE"
/locus_tag="Cphamn1_0313"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:236066"
gene 312254..312835
/locus_tag="Cphamn1_0314"
/db_xref="GeneID:6373974"
CDS 312254..312835
/locus_tag="Cphamn1_0314"
/note="TIGRFAM: transcription termination/antitermination
factor NusG;
PFAM: NGN domain protein;
KEGG: plt:Plut_1967 NusG antitermination factor"
/codon_start=1
/transl_table=11
/product="NusG antitermination factor"
/protein_id="YP_001958764.1"
/db_xref="GI:189499294"
/db_xref="InterPro:IPR001062"
/db_xref="InterPro:IPR003257"
/db_xref="InterPro:IPR006645"
/db_xref="GeneID:6373974"
/translation="MSESETNIEQDAQGLSRPRWYALRIYSGHERKVKEGIELEVERQ
ALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFPGYVLIEAILDKQTKNLIMDIPSVMG
FLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAPFRVGDTVKVIDGPFSSLTGVVHD
VCVERMKVKVMISFFGRSTPTELDFSQVKSISQ"
misc_feature 312308..312829
/locus_tag="Cphamn1_0314"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 312308..312628
/locus_tag="Cphamn1_0314"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(312317..312319,312419..312421,312479..312481,
312488..312490,312494..312496,312590..312592,
312614..312616)
/locus_tag="Cphamn1_0314"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 312656..312820
/locus_tag="Cphamn1_0314"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature order(312692..312706,312713..312715,312749..312751,
312776..312784,312788..312799,312809..312814)
/locus_tag="Cphamn1_0314"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature 312692..312703
/locus_tag="Cphamn1_0314"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene 312878..313303
/gene="rplK"
/locus_tag="Cphamn1_0315"
/db_xref="GeneID:6373975"
CDS 312878..313303
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="binds directly to 23S ribosomal RNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_001958765.1"
/db_xref="GI:189499295"
/db_xref="InterPro:IPR000911"
/db_xref="InterPro:IPR006519"
/db_xref="GeneID:6373975"
/translation="MAKKVVGFIKLQIPAGAANPAPPVGPALGQKGVNIMEFCKQFNA
KTQSQSGTIIPVVITVYSDKSFTFITKTPPAAVLLVKEAGLQKGSGEPNKNKVGKVTE
EQVRKIAELKMPDLNAFDIDGAMQMIRGTARSMGIVVEG"
misc_feature 312878..313300
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature 312902..313294
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(312905..312907,312965..312967,313097..313105,
313115..313117,313136..313138,313211..313213,
313226..313234,313244..313246,313253..313258,
313265..313270,313274..313282)
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(312905..312907,313046..313048,313052..313063,
313073..313075,313079..313084,313214..313219,
313226..313231)
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(312953..312955,312965..312967)
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(313154..313156,313163..313165)
/gene="rplK"
/locus_tag="Cphamn1_0315"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 313377..314066
/gene="rplA"
/locus_tag="Cphamn1_0316"
/db_xref="GeneID:6373976"
CDS 313377..314066
/gene="rplA"
/locus_tag="Cphamn1_0316"
/note="in Escherichia coli and Methanococcus, this protein
autoregulates expression; the binding site in the mRNA
mimics the binding site in the 23S rRNA"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_001958766.1"
/db_xref="GI:189499296"
/db_xref="InterPro:IPR002143"
/db_xref="InterPro:IPR005878"
/db_xref="GeneID:6373976"
/translation="MAGKKYRNALGKASAQDEYDLQQAMELVREINDTKFDASVDLAV
RLGVDPRHADQVVRGTVMLPHGTGKTVSVLVICSEAKASEAQEAGADFVGFEDYIEKI
QNGWTDVDVIIATPDVMGKLGKVGKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIE
FRVDKAGNVHAPVGKVSFSSEQLFENATSFLKEIVRLKPAAAKGHYIRNISVSSTMSP
GLRVKKEKYVA"
misc_feature 313437..314042
/gene="rplA"
/locus_tag="Cphamn1_0316"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature order(313476..313484,313491..313493,313497..313499,
313503..313505,313509..313511,313872..313874,
313878..313880,313884..313886,314022..314027,
314031..314033)
/gene="rplA"
/locus_tag="Cphamn1_0316"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene 314084..314605
/gene="rplJ"
/locus_tag="Cphamn1_0317"
/db_xref="GeneID:6373977"
CDS 314084..314605
/gene="rplJ"
/locus_tag="Cphamn1_0317"
/note="binds the two ribosomal protein L7/L12 dimers and
anchors them to the large ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_001958767.1"
/db_xref="GI:189499297"
/db_xref="InterPro:IPR001790"
/db_xref="InterPro:IPR002363"
/db_xref="GeneID:6373977"
/translation="MKREKKEQIVKDVAEKLQKAQGIYLTEFQGLDVEKMAELRNEFR
KAGVEYQVAKNTLIKKALENVNGGDRLADGLVNTTGMAIGYDDPIAPAKIIEKFGKKN
EMLKFKMATIDGSVFEADKLQVLSKMLSKTENIGRFAGMLNNVISSVPMVINAVMSDL
VSVIDQVAKQKQD"
misc_feature 314087..314557
/gene="rplJ"
/locus_tag="Cphamn1_0317"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature order(314099..314104,314111..314113,314243..314254,
314261..314263)
/gene="rplJ"
/locus_tag="Cphamn1_0317"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature order(314348..314350,314417..314419,314426..314428,
314474..314476,314483..314488,314495..314500,
314504..314521,314525..314533,314540..314545,
314549..314554)
/gene="rplJ"
/locus_tag="Cphamn1_0317"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene 314674..315054
/gene="rplL"
/locus_tag="Cphamn1_0318"
/db_xref="GeneID:6373978"
CDS 314674..315054
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="present in two forms; L12 is normal, while L7 is
aminoacylated at the N-terminal serine; the only multicopy
ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
L12 dimers bind L10; critically important for translation
efficiency and fidelity; stimulates GTPase activity of
translation factors"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_001958768.1"
/db_xref="GI:189499298"
/db_xref="InterPro:IPR000206"
/db_xref="InterPro:IPR013823"
/db_xref="GeneID:6373978"
/translation="MASIEALVEEIGKLSLTEASELVKALEDKFGVSAAPAVFAGAAA
AAPGGEAEAKEEQTEFDVELKAVGANKINVIKAVRSITGLGLKEAKEMVDGAPKVVKE
AVSKEEAEKVAKELKDAGAEVELK"
misc_feature 314677..315048
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(314677..314679,314716..314724,314731..314736,
314743..314745,314752..314754,314797..314799,
314806..314811,314815..314823,314845..314850,
314911..314913,314917..314922,314926..314928,
314932..314937,314977..314982,314986..314988,
314995..314997)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(314686..314688,314695..314697,314707..314709,
314746..314748,314761..314763)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(314728..314730,314737..314742,314752..314754,
314761..314763)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(314884..314889,314896..314901,314908..314910,
314929..314934,314941..314943)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(314887..314889,314899..314901,314908..314910,
314929..314934,314941..314943)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(314887..314889,314896..314901,314908..314910)
/gene="rplL"
/locus_tag="Cphamn1_0318"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 315255..319163
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/db_xref="GeneID:6373979"
CDS 315255..319163
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates; beta subunit
is part of the catalytic core which binds with a sigma
factor to produce the holoenzyme"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_001958769.1"
/db_xref="GI:189499299"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007121"
/db_xref="InterPro:IPR007641"
/db_xref="InterPro:IPR007644"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR010243"
/db_xref="GeneID:6373979"
/translation="MKVADKTQKKCIAFSKIQSIVNPPDLLQVQLDSFKRFIQDSVPL
AKRKDQGLEKVLRSAFPITDTRGLYLLEYISYTFDKPKYTVEECIERGLTYDVSLKVK
LKLSYKDEPDEQDWKETIQQEVYLGRIPYMTDRGTFIVNGAERVVVAQLHRSPGVVFS
EAIHPNGKKMYSAKIVPTRGSWIEFQTDINNQIYVYIDQKKNFLVSALLRAIGFTKDE
DILSLFDLIEEVPVKANKKEYLIGKNLASDIIDMQTGEVVSARTAITEEILDQITAAG
SKTVRIMKPGTGEKGLDKSVVTNTILNDSSATEEEALEIVYEELRANEAPDIDAARSF
LERTFFNQKKYDLGDVGRYRINKKLGKEHEAFKEFLSGQPELKALSDSIYEKILQTIQ
SYSDEPISDDIMVLTHYDIIAVINYLIKLVNGQAEVDDVDHLANRRVRTVGEQLAAQF
VIGLARMGKNVREKLNSRDTDKIAPADLINARTVSSVVSSFFATSQLSQFMDQTNPLA
EMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAE
INDKGFIQAPYRVVEKGIVTDKVEMLSAEDEENKITVPVSVKFDENRRITTETVQART
KGDYPVVDAEQVDYMDVSPIQIVSAAAALIPFLEHDDGNRALMGANMQRQAVPLLVAD
APLVGTGMEAKVARDSRAVVLAEGDGVIESVTAESIRVRYDMHEDEDDRMIMLDPDEG
VKTYNLIKFKRSNQDTCISQKPVVRTGQKLEKGDVLADGPSTENGELALGKNVLVAFM
PWRGYNFEDAIVLSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDALR
NLDENGIIRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP
AGMKGIVIKTKLFSRKKKVGLDIRERQEAIDALFERRTADLRSRFNTWMNQLFEGKKS
TGIYNLKGKEIVPAGSVLDAETLGKFAGPGFLESVDLSKGIVKDAKANATLLRLCREY
RLMLKDMEDERENEKYKLNIGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVV
GKILPIEDLPFMGDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAARALGVQFKTPIFD
GATYTEVQEQLEKAGLPMHGKVRLYDGRTGEPFDDEVTVGYIYMLKLSHLVDDKIHAR
STGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVVGRNKT
YESIVKGQNLPDPGTPESFNVLVRELQGLGLEIRIDNKVP"
misc_feature 315327..316739
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RNA polymerase beta subunit; Region:
RNA_pol_Rpb2_1; pfam04563"
/db_xref="CDD:191028"
misc_feature 315330..>315860
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature 315711..316574
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:218151"
misc_feature <316479..>318056
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(317661..317663,317703..317705)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(317718..317720,317829..317831,317835..317837,
317847..317855,317859..317861)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature <318402..319148
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature order(318453..318455,318459..318461,318534..318542,
318549..318551,318555..318560,318771..318794,
318798..318800)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(318507..318509,318513..318515,318519..318521,
318585..318587,318591..318593,318600..318602,
318609..318611,318624..318626,318636..318638,
318687..318689,318768..318770,318792..318800,
318804..318806,318843..318845,318852..318860,
318864..318869,318930..318938,318948..318950,
318954..318959,318963..318965,318969..318986,
318990..319007,319017..319019,319086..319088,
319098..319100,319104..319106,319110..319115,
319119..319121,319125..319136,319140..319142,
319146..319148)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(318531..318533,318774..318776)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature order(318534..318536,318573..318575,318654..318659,
318663..318665,318756..318758,318807..318809)
/gene="rpoB"
/locus_tag="Cphamn1_0319"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene 319234..323730
/locus_tag="Cphamn1_0320"
/db_xref="GeneID:6373980"
CDS 319234..323730
/locus_tag="Cphamn1_0320"
/note="DNA-dependent RNA polymerase catalyzes the
transcription of DNA into RNA using the four
ribonucleoside triphosphates as substrates. Subunit beta'
binds to sigma factor allowing it to bind to the -10
region of the promoter"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_001958770.1"
/db_xref="GI:189499300"
/db_xref="InterPro:IPR000722"
/db_xref="InterPro:IPR006592"
/db_xref="InterPro:IPR007066"
/db_xref="InterPro:IPR007080"
/db_xref="InterPro:IPR007081"
/db_xref="InterPro:IPR007083"
/db_xref="InterPro:IPR012754"
/db_xref="GeneID:6373980"
/translation="MIFSQGVSPFKGDFSKIKFSIASPESILAHSRGEVLKPETINYR
TFKPERDGLMCEKIFGPTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHI
SLAVPVVHTWFFRSVPSKIGALLDLSTKELERVIYYEVYVVINPGEPGEKQGIKKLDR
LTEEQYFQIITEYEDNQDLDDNDPAKFVAKMGGEAIHTLLKGLELDTQAVDLRKILRE
SGSEQKRADALKRLKVVEAFRKSFEPVKKTRKKSTGLFPEDEAPEPYVYEGNKPEYMV
MEVIPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEK
RMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRS
VIVVGPELKLHECGLPKSMAIELFQPFVIRRLVERGIAKSVKSAKKLIDKKDPIVWDV
LEKVIDGRPVLLNRAPTLHRLGIQAFQPVLIEGKAIQIHPLVCTAFNADFDGDQMAVH
VPLSQEAQLEATLLMLSSHNLILPQSGKPVTVPSQDMVLGMYYLTKSRLGEKGQGKLF
YGTEEVMIAFNEERIGLHALVFVHYDGRIEQKFDPLRMLDIIPDDQPEQKEWLKTKIG
ENKILVTTVGRVLFNRYVPEKIGFINKVIDKKGAKDLISKLSSEVGNVATAEFLDNIK
QVGFHFAMKGGLSIGLADAIIPEVKVQHIKKATKESTKIVREYNRGTLTENERYNQIV
DVWQKVTNLVAEESYQKLRKDRSGFNPLFMMLDSGARGSREQVRQLTGMRGLIARPQK
SMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTSLKTADAGYLTRRLHDV
AQDVIVTEDDCGTTRGIHVERGIEEETGGQIKFSEKIRGRVASRDIVDNLNDVVILPA
GGIITDEIADAIQKNAGVVEADIRSVLTCEAKQGICSKCYGTNLSVHKLVEIGEAVGV
IAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKSSMDGQVEFESIRSVEQETINEDG
MPETVTLVIQKNGKINILDPDSGKFLKRYEVPHGAHLVCKNGDIVKKDDVLFSSEPNS
TQIIAEVEGEVKFVDIDKGVTYKEEVDPQTGYVQHVIINWRTKLRASETREPRILIVD
KEGETLKTYPVPIKSNLFIENGKKVKIGDMLAKVPRNLDRVGGDITAGLPKVTELFEA
RIPSDPAIVSEIDGYVGFGPQRRSSKEIKVKNEFGEEKNYYVQVGKHVLANEGDEVTA
GEPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRVEEPGDTELLPGDLIDRTMFIRANSDVSEKVRVTSKGDAPARIHEGQLYKTREIIK
LNRELRRNSKQLIDVEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAV
AGKIDNLAGLKENVIVGKLIPAGTGLKKYLKLSLDMLAEGKESADALAEEEAGAAESG
EDDA"
misc_feature 319264..320376
/locus_tag="Cphamn1_0320"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature 319279..321945
/locus_tag="Cphamn1_0320"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:223164"
misc_feature 320050..320883
/locus_tag="Cphamn1_0320"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature 320815..321333
/locus_tag="Cphamn1_0320"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature 321421..321678
/locus_tag="Cphamn1_0320"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature 322117..>322224
/locus_tag="Cphamn1_0320"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 322135..322137
/locus_tag="Cphamn1_0320"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <323044..323619
/locus_tag="Cphamn1_0320"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(323461..323463,323506..323511)
/locus_tag="Cphamn1_0320"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(323551..323553,323569..323571,323587..323589,
323596..323601,323611..323613)
/locus_tag="Cphamn1_0320"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(324080..325423)
/locus_tag="Cphamn1_0321"
/db_xref="GeneID:6373981"
CDS complement(324080..325423)
/locus_tag="Cphamn1_0321"
/note="TIGRFAM: acetyl-CoA carboxylase, biotin
carboxylase;
PFAM: phosphoribosylglycinamide synthetase; ATP-dependent
carboxylate-amine ligase domain protein ATP-grasp; protein
of unknown function DUF201; Carbamoyl-phosphate synthase L
chain ATP-binding; Carbamoyl-phosphate synthetase large
chain domain protein; biotin carboxylase domain protein;
RimK domain protein ATP-grasp;
KEGG: cch:Cag_0359 acetyl-CoA carboxylase, biotin
carboxylase"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxylase"
/protein_id="YP_001958771.1"
/db_xref="GI:189499301"
/db_xref="InterPro:IPR000115"
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR003806"
/db_xref="InterPro:IPR004549"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR005481"
/db_xref="InterPro:IPR005482"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR011764"
/db_xref="InterPro:IPR013651"
/db_xref="GeneID:6373981"
/translation="MFKKILIANRGEIALRVMQSCRELGISTVAVHSTADRNSLHVRY
ADEAVCIGPPMGKDSYLNVPRILAAAEITNADAIHPGYGFLAENADFAEVCTSSGIKF
IGPDAEMIRKMGDKNTARKTMIAAGVPVVPGSSGLISDGNEALKTAEKIGYPIIIKPT
AGGGGKGMRVVNDGGELGKAIATAQNEAQQAFGNSGVYIEKFIECPRHVEIQVLSDQH
GNTIHLGERDCTIQRRHQKLIEETPSPAIHEEQRRKMGEAAVAAAAAINYEGAGTVEF
LLDKHGNFYFMEMNTRIQVEHPVTEERYSVDLVREQIMTAAGESIAQRSFSPKGHAIE
CRINAEDPEHGFRPSPGELQVFHTPGGYGVRVDSHGYASYKVPPHYDSLIAKLIVHAD
TREEAIERMLRALDEFIVVGIKTTIPFHKKLLRTEAFRSGKFDTGFLDSGGFTLS"
misc_feature complement(324104..325423)
/locus_tag="Cphamn1_0321"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:236307"
misc_feature complement(325100..325420)
/locus_tag="Cphamn1_0321"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(324452..325081)
/locus_tag="Cphamn1_0321"
/note="Carbamoyl-phosphate synthase L chain, ATP binding
domain; Region: CPSase_L_D2; pfam02786"
/db_xref="CDD:190425"
misc_feature complement(324104..324424)
/locus_tag="Cphamn1_0321"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:214878"
STS 325013..326207
/standard_name="Itga2"
/db_xref="UniSTS:143609"
gene complement(325442..325915)
/locus_tag="Cphamn1_0322"
/db_xref="GeneID:6373982"
CDS complement(325442..325915)
/locus_tag="Cphamn1_0322"
/note="TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl
carrier protein;
PFAM: biotin/lipoyl attachment domain-containing protein;
KEGG: pvi:Cvib_1602 biotin carboxyl carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxyl carrier
protein"
/protein_id="YP_001958772.1"
/db_xref="GI:189499302"
/db_xref="InterPro:IPR000089"
/db_xref="InterPro:IPR000551"
/db_xref="InterPro:IPR001249"
/db_xref="InterPro:IPR001882"
/db_xref="GeneID:6373982"
/translation="MNLKEIQQLIDMINNSDIGEAIIEEADFKITLKRSSALPAAAAP
LQPINQAIAQPVVQQPTAAESGEKSDQPSAPANDGLTEIRSPIVGTFYRSPTPDAEPF
INEQDTIENGQTLCIIEAMKLMNEIESDLSGTIVEILVENGQPVEYDQVLFLVKP"
misc_feature complement(325448..325915)
/locus_tag="Cphamn1_0322"
/note="acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated; Region: PRK06302"
/db_xref="CDD:235777"
misc_feature complement(325451..325672)
/locus_tag="Cphamn1_0322"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(325526..325528,325547..325555,
325580..325582))
/locus_tag="Cphamn1_0322"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(325550..325552)
/locus_tag="Cphamn1_0322"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(325966..326667)
/locus_tag="Cphamn1_0323"
/db_xref="GeneID:6373983"
CDS complement(325966..326667)
/locus_tag="Cphamn1_0323"
/note="Involved in peptide bond synthesis; alters the
affinity of the ribosome for aminoacyl-tRNA"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_001958773.1"
/db_xref="GI:189499303"
/db_xref="InterPro:IPR001059"
/db_xref="InterPro:IPR011768"
/db_xref="InterPro:IPR013185"
/db_xref="InterPro:IPR013852"
/db_xref="InterPro:IPR015365"
/db_xref="GeneID:6373983"
/translation="MQSLFPLALDDRCSQIVNHIALYYIKLFVEQQKERDRKSVHFPH
FMTSISNVSKGSIIRFRGEPHRIESLIHRTPGNLRAFYQAGMKNLKTGRNVEYRFSAS
DAVDVIVTERKQYQYLYRDGDDFIIMDTVTFDQINLAREIIGSPSRFITEGMLVDIVF
ADDGSILEAELPTFVELEVTETNPATKDDRATSGTKPAILETGAEVNVPMFIQTGSII
RVDTRSGEYMDRVKK"
misc_feature complement(325972..326532)
/locus_tag="Cphamn1_0323"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:234788"
misc_feature complement(326353..326526)
/locus_tag="Cphamn1_0323"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature complement(326152..326337)
/locus_tag="Cphamn1_0323"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:239916"
misc_feature complement(order(326170..326175,326191..326193,
326266..326268))
/locus_tag="Cphamn1_0323"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239916"
misc_feature complement(325978..326145)
/locus_tag="Cphamn1_0323"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:240220"
misc_feature complement(order(325987..325992,326005..326007,
326056..326058))
/locus_tag="Cphamn1_0323"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240220"
gene 326751..327023
/locus_tag="Cphamn1_0324"
/db_xref="GeneID:6373984"
CDS 326751..327023
/locus_tag="Cphamn1_0324"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: cte:CT0160 DNA-binding protein HU-beta"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_001958774.1"
/db_xref="GI:189499304"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:6373984"
/translation="MSKAELVEKIASQAGLTKADAERAVSAFVNVVTAGLKAGDDITL
VGFGTFSTGERAARQGRNPQTGETISIAAKKVVKFKAGKALRDEVA"
misc_feature 326754..327011
/locus_tag="Cphamn1_0324"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature order(326754..326762,326826..326828,326871..326873,
326877..326879,326883..326888,326895..326897,
326907..326909,326913..326918,326922..326924,
326931..326942,326970..326972,326982..326984,
326988..326990,326997..326999)
/locus_tag="Cphamn1_0324"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
misc_feature order(326754..326759,326766..326768,326775..326777,
326787..326789,326829..326831,326838..326843,
326850..326855,326865..326879,326886..326891,
326904..326906,326970..326975,326985..326987,
326991..326993)
/locus_tag="Cphamn1_0324"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
gene 327119..328126
/locus_tag="Cphamn1_0325"
/db_xref="GeneID:6373985"
CDS 327119..328126
/locus_tag="Cphamn1_0325"
/EC_number="6.4.1.2"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer composed of two alpha (AccA)
and two beta (AccD) subunits; one of the two catalytic
subunits that can form the acetyl CoA carboxylase enzyme
together with a carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyltransferase
subunit alpha"
/protein_id="YP_001958775.1"
/db_xref="GI:189499305"
/db_xref="InterPro:IPR001095"
/db_xref="InterPro:IPR011763"
/db_xref="GeneID:6373985"
/translation="MATKVVLDFEKPLFELEEKLNEMRVCLKQSSGEHNLSETESLSR
EIEVLESKVDALRHAIYKNLTRWQKVQLARHPERPFTLDYIYMMMQDFVELSGDRHYG
DDKALIGGFARIEDEERDFSQTVMVIGHQKGRDTKSNLYRNFGMSQPEGYRKALRLMK
LAEKFNKPVVTLIDTPGAYPGIKAEELGQAEAIARNLFEMAGLRVPVICVIIGEGASG
GAIGIGVGNRILMAENAWYSVISPESCSSILWRSWKFKEQAAEALKLTAEDLLEQKIV
DRIIPEPLGGAHHDPEKMADTVKSLLVEELRMLLEKNPDDLVNERIEKFAAMGVWNEE
E"
misc_feature 327242..328120
/locus_tag="Cphamn1_0325"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:235580"
gene complement(328308..329336)
/locus_tag="Cphamn1_0326"
/db_xref="GeneID:6373986"
CDS complement(328308..329336)
/locus_tag="Cphamn1_0326"
/note="catalyzes the coenzyme A dependent formation of
succinyl-CoA from 2-oxoglutarate and ferredoxin"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate ferredoxin oxidoreductase subunit
beta"
/protein_id="YP_001958776.1"
/db_xref="GI:189499306"
/db_xref="InterPro:IPR011766"
/db_xref="GeneID:6373986"
/translation="MTDTKKQLTAQDFTSSQEVKWCPGCGDHAVLQQLKNAMADLELK
TEEVVFVSGIGCSSRLPYYVATYGVHGIHGRAMAIGSGLKAARPDLSVWIATGDGDAL
SIGGNHYIHTIRRNLDMNVILFNNEIYGLTKGQYSPTSKVGLKTVTSPNGVVDYPMNT
LALTLGSGGTFVARVLDRDGKFMREIFKRAAKHSGTSVVEIYQNCPIYNDGAFGVFTD
RDRKADTTVYLEQGKPLVFGKENNKGIKLDGFTPVVVDLNDSSVSKDDLWIHDEKDKL
KANILADFFDDPDTKEDYLPRPIGIFYVEDRFTYEEALDAQIAQAQAGGEGSLEELLA
GPSTWTIK"
misc_feature complement(328407..329330)
/locus_tag="Cphamn1_0326"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
beta; Reviewed; Region: PRK11867"
/db_xref="CDD:237006"
misc_feature complement(328713..329276)
/locus_tag="Cphamn1_0326"
/note="Thiamine pyrophosphate (TPP family), 2-oxoglutarate
ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding
module; OGFOR catalyzes the oxidative decarboxylation of
2-oxo-acids, with ferredoxin acting as an electron
acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR;
cd03375"
/db_xref="CDD:239470"
misc_feature complement(order(328953..328955,328959..328961,
329037..329048,329118..329120))
/locus_tag="Cphamn1_0326"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:239470"
gene complement(329340..331283)
/locus_tag="Cphamn1_0327"
/db_xref="GeneID:6373987"
CDS complement(329340..331283)
/locus_tag="Cphamn1_0327"
/note="PFAM: pyruvate ferredoxin/flavodoxin
oxidoreductase; pyruvate flavodoxin/ferredoxin
oxidoreductase domain protein;
KEGG: cte:CT0163 2-oxoglutarate ferredoxin oxidoreductase,
alpha subunit"
/codon_start=1
/transl_table=11
/product="pyruvate flavodoxin/ferredoxin oxidoreductase
domain-containing protein"
/protein_id="YP_001958777.1"
/db_xref="GI:189499307"
/db_xref="InterPro:IPR002869"
/db_xref="InterPro:IPR002880"
/db_xref="GeneID:6373987"
/translation="MTIHWQRWELHFIYFLKELTMSESTILNNENMVTSKTSVSVLFA
GDSGDGMQLTGTQFANTVAVYGSDLNTFPNFPSEIRAPAGTIAGVSGFQLQFGSKAVY
TPGAKFDVMVAMNAAALKANLNNLHHGGIILANTDGFDEKNLKLAGYGEDNNPLEDGT
VKDYTVFEIPVVSLTRKALADTGLSTKNIDRCKNMFVLGTLYWLYSLPIETTIETLRT
KFKKKADVAEANIMAVKAGYNFGDETEMFSQHGRYEVDPATQKPGHYRRVTGNEASAL
ALGAAAKKAGIQLFLGSYPITPASEILQELSKMKKWGVKTFQAEDEIAGVLTSIGASY
GGALAATNTAGPGLALKSEALGLAVILEVPLVVVNVQRGGPSTGLPTKPEQSDLFISM
FGRHGDAPLPVIAATSPVDCFYATYEAAKIAVEYMTPVICLTDGYLGLSSEPMLIPAP
KDLADITPKYVKERKPEDPPYLPYKRDEKGVREWAIPGTKGLEHRIGGLEKSHETGTV
SHVPENHELMTKLRAEKIERVIDLVPDQTIDNGNEEGDLLVLGWGSTYGAIKIAVEQA
IEGGCNVSHAHVRYLNPLPENLGDILGKFKKVLMPENNNGQLIHIIRDKYQIEPIGFS
KVQGLPFNEMEIEAKITDILKEL"
misc_feature complement(329364..331172)
/locus_tag="Cphamn1_0327"
/note="2-oxoacid:acceptor oxidoreductase, alpha subunit;
Region: OAFO_sf; TIGR03710"
/db_xref="CDD:234323"
misc_feature complement(330549..331169)
/locus_tag="Cphamn1_0327"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, gamma subunit
[Energy production and conversion]; Region: PorG; COG1014"
/db_xref="CDD:223946"
misc_feature complement(329976..330416)
/locus_tag="Cphamn1_0327"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature complement(order(330096..330101,330159..330164,
330201..330203,330213..330215,330222..330224,
330273..330275,330279..330281,330288..330296,
330300..330305,330324..330335,330372..330374,
330381..330383,330393..330395,330411..330416))
/locus_tag="Cphamn1_0327"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(330213..330215,330222..330224,
330273..330275,330279..330281,330288..330296,
330300..330305,330324..330335,330372..330377,
330393..330395,330399..330404,330411..330416))
/locus_tag="Cphamn1_0327"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(330318..330320,330399..330401))
/locus_tag="Cphamn1_0327"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(330168..330170,330393..330395))
/locus_tag="Cphamn1_0327"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
gene complement(331415..331684)
/locus_tag="Cphamn1_0328"
/db_xref="GeneID:6373988"
CDS complement(331415..331684)
/locus_tag="Cphamn1_0328"
/note="KEGG: cch:Cag_0367 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958778.1"
/db_xref="GI:189499308"
/db_xref="GeneID:6373988"
/translation="MSWGMESQKKREDILYLMELSTQKMMENPNHVNEVKKSANGCWM
DQMYGLQRCDICDLDQNCPGKLEKLWQEYCEANNIIVDTDSDDNS"
gene complement(331897..332565)
/locus_tag="Cphamn1_0329"
/db_xref="GeneID:6373989"
CDS complement(331897..332565)
/locus_tag="Cphamn1_0329"
/note="KEGG: pvi:Cvib_1065 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958779.1"
/db_xref="GI:189499309"
/db_xref="GeneID:6373989"
/translation="MRPYRSLDLQAVVKTIASCFHFFLINCGYHSVKGRDAMNDTEHA
LEWTNQPMPDVLQELHPSQQRKVINYIDNLVSSKTDGLEELYNAIAMIVKYIPHFVVI
PLMVEHIKPQIAAGVCMKMSVDQATGYANELPLEYFSKVSQHIENPLMAEILGKMKKH
KAEKFIRYELQHLPAHMLDISKHLDKQKLEIVAKSVTLPSHEDDLVGHPHKEIIEQLR
YMQG"
gene 332767..335427
/gene="alaS"
/locus_tag="Cphamn1_0330"
/db_xref="GeneID:6373990"
CDS 332767..335427
/gene="alaS"
/locus_tag="Cphamn1_0330"
/EC_number="6.1.1.7"
/note="Catalyzes a two-step reaction, first charging an
alanyl molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="alanyl-tRNA synthetase"
/protein_id="YP_001958780.1"
/db_xref="GI:189499310"
/db_xref="InterPro:IPR002318"
/db_xref="InterPro:IPR003156"
/db_xref="InterPro:IPR012947"
/db_xref="GeneID:6373990"
/translation="MKSSDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQ
FKDVFLDKGSRPYSRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYK
KEAIAWAWELLTEVWSLPKERLYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFW
EMGETGPCGPCSEIHIDLTDDLSGRELVNADDHRVIELWNLVFIQYNRKADRSLEPLP
KKHVDTGMGFERITAVLQSKGSNYDTDIFAPLFDAITAHTGVAYTATLDGERDMAMRV
IADHARTLTFAITDGAVPGNEGRGYVLRRILRRAVRYARKLDCNQPVLYRLVGVIADT
MGAVFPELKKQQATVEKIVKSEEESFLVTLGRGIEIFGEIAAALKASKEKSISGEDAF
RLYDTYGFPLDLTRLMASEEGLGVDEKGFGACMKEQKERARKDRKQKQQITGDEGQWQ
WFEQKGPTVFLGYETLETEAQIIGVRIAGSQMQLVLDQTPFYAESGGQTGDRGRIEGE
NYIFDVIDTRKDGDVIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREATE
RNHTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNER
IREAGALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVPGVSMELCGGTHVSNVGQ
IGLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQ
ELLEERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQ
FLREKIGRGVGLLAGEEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMVQGGGGGKP
GFATAGGKNPAGIPESMKVFEETVRTKLQS"
misc_feature 332767..335418
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="alanyl-tRNA synthetase; Reviewed; Region: alaS;
PRK00252"
/db_xref="CDD:234701"
misc_feature 332773..333480
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is responsible
for the attachment of alanine to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: AlaRS_core;
cd00673"
/db_xref="CDD:238360"
misc_feature 332827..332841
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="motif 1; other site"
/db_xref="CDD:238360"
misc_feature order(332908..332910,332914..332916,332968..332970,
333031..333033,333037..333039,333043..333051,
333355..333360,333370..333372,333427..333432,
333442..333447,333454..333456)
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="active site"
/db_xref="CDD:238360"
misc_feature 332965..332973
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="motif 2; other site"
/db_xref="CDD:238360"
misc_feature 333439..333456
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="motif 3; other site"
/db_xref="CDD:238360"
misc_feature 334741..334872
/gene="alaS"
/locus_tag="Cphamn1_0330"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; pfam07973"
/db_xref="CDD:219676"
gene 335440..335934
/locus_tag="Cphamn1_0331"
/db_xref="GeneID:6373991"
CDS 335440..335934
/locus_tag="Cphamn1_0331"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein;
KEGG: pvi:Cvib_1592 4Fe-4S ferredoxin, iron-sulfur binding
domain protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_001958781.1"
/db_xref="GI:189499311"
/db_xref="InterPro:IPR001450"
/db_xref="GeneID:6373991"
/translation="MLVFDCFFGRCSRLSCDGCLFRPVRSLRQRLKSRAMDKCEDDSV
DTEGVWKKEVESVLAGKAPETKQPTVKRKKKLLVPREEIPWFPTINPDLCNGCTDCKV
LCKPGVFEPGPPDPAGIQRPKFLVAHPYKCLVLCDRCVPICTSGAIKLPPKEDFEKFV
EYVD"
misc_feature 335692..335913
/locus_tag="Cphamn1_0331"
/note="Ferredoxin [Energy production and conversion];
Region: COG1146"
/db_xref="CDD:224069"
gene complement(336186..336992)
/locus_tag="Cphamn1_0332"
/db_xref="GeneID:6373992"
CDS complement(336186..336992)
/locus_tag="Cphamn1_0332"
/note="PFAM: short-chain dehydrogenase/reductase SDR;
KEGG: cte:CT1895 hypothetical protein"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_001958782.1"
/db_xref="GI:189499312"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002347"
/db_xref="GeneID:6373992"
/translation="MKQLTICITGSTDGIGLAAAKRFSSAGHRVIVHGREALRISAAC
SDIFRTTGVEPYGAIEADFTSLDAVYAMGRELCERYSGIDLLINNAAVYMPLRTLVPE
GYETTFCVNYLSPVLLTNVVTPVLKANGGSVLNVSSVDHHSAVFDPLNMQGERSYSGY
EAYAQSKLFYIMFTLESANDDDALRSNTLDPGVIATKLLHAGWSLAGDDVSAGGDEVY
ETVMKIARGNCNGEYFENLKPATCSMIAKDPLQRKDLAELTGRMLHRYEC"
misc_feature complement(336228..336980)
/locus_tag="Cphamn1_0332"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:245206"
misc_feature complement(order(336411..336422,336492..336494,
336504..336506,336561..336569,336720..336728,
336885..336893,336948..336950,336954..336959,
336963..336965))
/locus_tag="Cphamn1_0332"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(336492..336494,336504..336506,
336561..336563,336660..336662))
/locus_tag="Cphamn1_0332"
/note="active site"
/db_xref="CDD:187535"
gene 337284..338927
/locus_tag="Cphamn1_0333"
/db_xref="GeneID:6373993"
CDS 337284..338927
/locus_tag="Cphamn1_0333"
/note="PFAM: N-6 DNA methylase;
KEGG: ava:Ava_1159 N-6 DNA methylase"
/codon_start=1
/transl_table=11
/product="N-6 DNA methylase"
/protein_id="YP_001958783.1"
/db_xref="GI:189499313"
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR003356"
/db_xref="GeneID:6373993"
/translation="MANNNGNGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRL
CDVFDDELNRIAAEVGSRKKAFQLVRADHKLVRFYLPLVPFDPEEPVWSVIRKFSDRI
GEGVTTHMRAIARENPLLQGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKCLGLDD
VEADIIGKSYEYLIRKFAEGGGQSAGEFYTPPEVGTIMSRVLAPEPGMDIYDPCCGSG
GLLVKCEIAMEEKRREIKEGGHSCPPLHSELNGYPSCNGGLENPPSIAPLKLYGQEYI
ADTWAMANMNMIIHDMEGQIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDWFTEA
DYDNDELDRFPAGAGFPGKSSADWGWIQHIHASLNNSGRAAIVLDTGAVSRGSGNAGT
NKEKSVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNRDKEIEREGCVLLVNASR
IFEKGDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVNLAELKKNDYNISPSRYIHTGE
AETYRPIEDIVKDLNAIELEARETDEALRKILKQLGVDV"
misc_feature 337308..338924
/locus_tag="Cphamn1_0333"
/note="Type I restriction-modification system
methyltransferase subunit [Defense mechanisms]; Region:
HsdM; COG0286"
/db_xref="CDD:223363"
misc_feature 337314..337736
/locus_tag="Cphamn1_0333"
/note="HsdM N-terminal domain; Region: HsdM_N; pfam12161"
/db_xref="CDD:221448"
gene 338924..340216
/locus_tag="Cphamn1_0334"
/db_xref="GeneID:6373994"
CDS 338924..340216
/locus_tag="Cphamn1_0334"
/note="PFAM: restriction modification system DNA
specificity domain;
KEGG: pab:PAB2150 type I restriction-modification enzyme,
S subunit"
/codon_start=1
/transl_table=11
/product="restriction modification system DNA specificity
domain"
/protein_id="YP_001958784.1"
/db_xref="GI:189499314"
/db_xref="InterPro:IPR000055"
/db_xref="GeneID:6373994"
/translation="MNTKGGGLSSPRLKNSSGLENPPYVEGDSGGSLDMRDSNLLIES
LPDRWKNHKFGDLCDRVKNSYQPVDGGEKPYIGLEHLAQGFPAFIGRGKECEVKSSKT
VFKSGDILFGKLRPYLRKGAQADFDGICSTDILVFRAKPICESNFLRFVIHSEEFVAH
AKTTTSGVRHPRTSWPLLREFYISLPPLPEQKKIAHILSTVQRAIEAQDRIIQTTTEL
KKALMHKLFTEGLRNEPQKEAEIGLVPESWEVVEIGDVFKFTSGKTKPKDTAPEPSVE
RTVPVYGGNGVLGYSAQSLLNEDVLILGRVGEYCGCAHLTKPVSWVTDNALYAKEEKR
SVNRSYARTHFAHLNLNQYSNKMGQPLITQGIINRVKFGLPSREEQDELANAFETLDT
RIEQINAKKKSLQDLFHTLLHELMTAKINVGHISEKIA"
misc_feature 339059..339541
/locus_tag="Cphamn1_0334"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:216490"
misc_feature 339068..340180
/locus_tag="Cphamn1_0334"
/note="Restriction endonuclease S subunits [Defense
mechanisms]; Region: HsdS; COG0732"
/db_xref="CDD:223804"
misc_feature 339656..340135
/locus_tag="Cphamn1_0334"
/note="Type I restriction modification DNA specificity
domain; Region: Methylase_S; pfam01420"
/db_xref="CDD:216490"
gene 340213..341988
/locus_tag="Cphamn1_0335"
/db_xref="GeneID:6373995"
CDS 340213..341988
/locus_tag="Cphamn1_0335"
/note="KEGG: gsu:GSU1360 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958785.1"
/db_xref="GI:189499315"
/db_xref="GeneID:6373995"
/translation="MTSSDQNQTVGEFISHYVQNAPQIIWFLGAGTSRTAGMPTANDI
TWDLKRRYYCLRENQDIRSHDLNNKAVKDKIQNYLNSRGVPALWSAEEYSFYFKLSFG
NDYAAQQKYLASKLSPQNISLSIGHRALAALIDLGLTRMVFTTNFDEVLEAAFSNVAE
KNLSAYHLEGSYAALEALNKEDFPIYCKLHGDFRYQSVKNLSVDLRDNDKQIEKCFLA
AGNRFGMVVSGYSGRDTNVMAMFFSALEQSNPFPRGLFWTTTSLSTVSDQVRNLIAYA
RDKNVKAEIIETGTFDIMLSKIWRQMPSRSDKLDAKVRTAEAKPVCIPRYHRGVKYPI
LRMNALQICDFPETCGSIECQPALRLSELNEIKRSSRPKAIITCAEKTLFWGASEEVS
KLFATDRIKSISSYSLSVAIRSNPDSTVLHSFIENALSEALCNDKPLMLRKKGRSYFA
VVDHKKVDNPRLDALKKAVGSGNSSSIIVGNIPGKANTFWAEALEMKVERRDEKWWLL
IEPDIWVSPLSEREEFVNFLSHKRLKRYNAQAYNILDAWIQLLCGSVGKGETIFVSCY
ENTNYPAQFGVNTRTAYSRREGVNG"
misc_feature 340291..>340791
/locus_tag="Cphamn1_0335"
/note="SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+; Region:
SIR2; cl00195"
/db_xref="CDD:241675"
misc_feature 340630..341061
/locus_tag="Cphamn1_0335"
/note="SIR2-like domain; Region: SIR2_2; pfam13289"
/db_xref="CDD:222028"
gene 341981..343405
/locus_tag="Cphamn1_0336"
/db_xref="GeneID:6373996"
CDS 341981..343405
/locus_tag="Cphamn1_0336"
/note="KEGG: gsu:GSU1361 Piwi domain protein"
/codon_start=1
/transl_table=11
/product="Piwi domain-containing protein"
/protein_id="YP_001958786.1"
/db_xref="GI:189499316"
/db_xref="GeneID:6373996"
/translation="MDSFSTQLSGHFALPEPLLLFAKGRRDLHPLRGLLEAGPYGIDL
GFPNQLRLAYLAPSDLLPRLDSFVLELSKPAQPKEALNYYPEYPGFEPLFQISLVQPA
ENLKCSTSPDCLGLAQRRSGPELVDLILDSMVSLIRQKQSFNVVILYLPSSWKTCFEY
EGFNLHDCLKAKLAPLNIPVQIVNDAMFERRCRANVMWGISVALYAKAGGIPWKLADC
DKDEAYIGLSYAIKKHADGNEYSTCCSQVFDPDGTGFEFVAYDTREFILDRKGNPYLS
YQEMQSVLSRSLLLYQNSHSGRVPKKLFVHKTSHFTEKEIQGAYDAIGTATEIELIQV
IKGSRWYGLKLDGPKSSQCKPQPAPYPIERGIYLPISDNECLLWTQGSVANINQQKSY
QPVFKEAALRPLPGPIMLRRFSGDGGWHSTCASVLGLTKVDWNNNTLYKTLPATLVYS
KVFADVVKFSPTIANDIYDYRFFM"
misc_feature 342029..343354
/locus_tag="Cphamn1_0336"
/note="Piwi_piwi-like_ProArk: PIWI domain, Piwi-like
subfamily found in Archaea and Bacteria. RNA silencing
refers to a group of related gene-silencing mechanisms
mediated by short RNA molecules, including siRNAs, miRNAs,
and heterochromatin-related guide RNAs; Region:
Piwi_piwi-like_ProArk; cd04659"
/db_xref="CDD:240017"
misc_feature order(342476..342478,342488..342490,342521..342532,
342539..342541,342566..342568,342575..342577,
342587..342589,342599..342601,343283..343285)
/locus_tag="Cphamn1_0336"
/note="5' RNA guide strand anchoring site; other site"
/db_xref="CDD:240017"
misc_feature order(342662..342664,342668..342670,342902..342904,
343331..343333)
/locus_tag="Cphamn1_0336"
/note="active site"
/db_xref="CDD:240017"
gene 343420..347457
/locus_tag="Cphamn1_0337"
/db_xref="GeneID:6373997"
CDS 343420..347457
/locus_tag="Cphamn1_0337"
/note="KEGG: ava:Ava_1156 type I site-specific
deoxyribonuclease HsdR;
TIGRFAM: type I site-specific deoxyribonuclease, HsdR
family;
PFAM: type III restriction protein res subunit; protein of
unknown function DUF450; protein of unknown function
DUF1568;
SMART: DEAD-like helicases"
/codon_start=1
/transl_table=11
/product="HsdR family type I site-specific
deoxyribonuclease"
/protein_id="YP_001958787.1"
/db_xref="GI:189499317"
/db_xref="InterPro:IPR004473"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR007409"
/db_xref="InterPro:IPR011462"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="REBASE:CphBORF333P"
/db_xref="GeneID:6373997"
/translation="MPTPSEHKTVQSRILAYAEEIGWAVVSREEAEKRRAGFPTRHYI
QSGKQENGGQECPPSGKESLSLFFDDLLDAKVREFNPCYAEAEGALLGQFRHLHADIY
GNREFVEQLRNRGKFFDHEEKRERDLILIDYDDPARNVYEVTEEWAFHNGHYGTREDV
VFLINGIPVLVIECKNASKDEAIALGIDQIRRYHRETPELFVPQQLFTATDAIGFSYG
ATWNTVRRNIFEWKILGGGHSCPPLHSELESGHSCPPLHSELESGLSSPPLHSDTAIG
LSNPPLHLKDAEENGGQECPPSFDVEENGGLENPPSFLDPEREIGMTQHRLPHWQQGD
VWVFVTWRLADSLPQSKLEEWKEEREIWLSNHPEPWDEKTEEEYHERFSRQIDEWLDQ
GSGSCLLREPAYAQIVANALRHFDGERYQLASFVVMPNHVHVLFCPSGTHSLAGILKS
WKGFSAREINKRSGKTGSFWQEEYWDRLIRSEKHFFRVAKYIRENPIKGGGLSSPPLH
SDFERGLENPPLHSDVNVGLSNPPFYYECELLFGKNGGQECPPSVPGRLESKVKTFCA
IPQVLAFLKEYIVFAEKDEELNKYILRQHQTGAVDASVNRALDPVRSRGLVWHTQGSG
KTFTMIKAAERLFRAPEAEKPTILLMIDRNELEDQMLKNLAALGLGNLEHASSIARLN
KLLKYDYRGIIVTMIHKFRDMPGNINTRSNIYVLIDEAHRTTGGDLGNYLMAGLPNAT
FIGFTGTPVDKTVYGRGTFKTFGCEDDKGYLHKYSIADSIEDGTTLPLYYQLAPNDML
VPHETLDAEFLSLAEAEGVADIEELNKILDRAVNLKNFLKGRERIEKVAQFVAGHYLA
NVEPLGYKAFLVGVDREACAHYKQALDQFLPSDYSRVVYTGNNNDSVLLKKFHLDQKQ
ERQIRKSFGKIDQQPKILIVTEKLLTGFDAPLLYAMYLDKPMRDHTLLQAIARVNRPY
ENEAQEMVKPHGFVLDFVGIFDKLEKALAFDSKEINAIVKDIKLLKMLFQNKMEAIGG
RTFLSAIGVQTADIRNGHWISNEDSECNGGLESHEDKCNGGLESPPPFTFNDRDVDNL
IEHFRDPERRKAFFKEYKEIEMLYEIISPDAFLRPFIERYATLSAVYDVVRKAYAKRI
QVDRDFQRKTNLLVQEKVGSYGVGELQGVVKIDSNAIDIINAQAGGAPTRVINLIKSI
EKIADDQSDDLFLIAMAERAQAVQESFESRQVTTAEALEQLMQAVEVNEERKKEQAAK
GFDGLTFFVYRTLLDEKIEHAEEVSRQIKTAFVEFPNWQKSEAALRELRKKITFAIFA
QSDDLERVTGIVDYLFRLLERANRI"
misc_feature 343831..344079
/locus_tag="Cphamn1_0337"
/note="Type I restriction enzyme R protein N terminus
(HSDR_N); Region: HSDR_N; pfam04313"
/db_xref="CDD:218021"
misc_feature <344683..344904
/locus_tag="Cphamn1_0337"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:242138"
misc_feature <345127..346443
/locus_tag="Cphamn1_0337"
/note="type I site-specific deoxyribonuclease, HsdR
family; Region: hsdR; TIGR00348"
/db_xref="CDD:232933"
misc_feature 345262..345663
/locus_tag="Cphamn1_0337"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 345283..345297
/locus_tag="Cphamn1_0337"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 345571..345582
/locus_tag="Cphamn1_0337"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
gene 347461..347769
/locus_tag="Cphamn1_0338"
/db_xref="GeneID:6373998"
CDS 347461..347769
/locus_tag="Cphamn1_0338"
/note="PFAM: protein of unknown function DUF45;
KEGG: ava:Ava_1155 metal-dependent hydrolase-like"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958788.1"
/db_xref="GI:189499318"
/db_xref="InterPro:IPR002725"
/db_xref="InterPro:IPR006025"
/db_xref="GeneID:6373998"
/translation="MTDSTPKIRFKQRVRQWAEKLDVRVVWLGVRPMKHKWASCSTEG
HLNFNAELLDMDEKIWDYVIVHELLHFFVPNHGKLWKSLMRAHLGEYEACEKELRDNV
"
misc_feature <347479..347763
/locus_tag="Cphamn1_0338"
/note="Protein of unknown function DUF45; Region: DUF45;
cl00636"
/db_xref="CDD:241996"
gene 348205..348552
/locus_tag="Cphamn1_0339"
/db_xref="GeneID:6373999"
CDS 348205..348552
/locus_tag="Cphamn1_0339"
/note="PFAM: helix-turn-helix domain protein;
KEGG: ccr:CC_2771 transcriptional regulator, Cro/CI
family"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_001958789.1"
/db_xref="GI:189499319"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:6373999"
/translation="MKIEGTLTDEAILGELGGRLAQRRLELQLSQEALAEQAGVSKRT
VERIEAGATTQVSSMIRVMRGLGLLERLEALVPEAGPRPMELLKLKGKARKRVRTKKQ
PVEEKPWKWGDES"
gene 348549..349856
/locus_tag="Cphamn1_0340"
/pseudo
/db_xref="GeneID:6374000"
gene complement(350412..351650)
/locus_tag="Cphamn1_0341"
/db_xref="GeneID:6374001"
CDS complement(350412..351650)
/locus_tag="Cphamn1_0341"
/EC_number="3.1.3.3"
/note="KEGG: cte:CT0173 phosphoserine phosphatase;
TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily
hydrolase, subfamily IB (PSPase-like);
PFAM: amino acid-binding ACT domain protein; Haloacid
dehalogenase domain protein hydrolase; Haloacid
dehalogenase domain protein hydrolase type 3"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase SerB"
/protein_id="YP_001958790.1"
/db_xref="GI:189499320"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR004469"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006383"
/db_xref="InterPro:IPR013200"
/db_xref="GeneID:6374001"
/translation="MIPVRELLLLNISGPDKSGLTAQLSSILARYNVRILDIGQEVIH
DQLSLGMLVEVPSEFQSAPVLKDLLFTVHTLGLSISFTPITDEAYEHWVGEQGKPRHL
LTLLAREIKAEQIARVTSTIAEHNLNIDTINRLSGRIPLGKRLAENTKACIEFSLRGA
IVNEDRFREQMLAITDDLGIDIAFQEDNIYRRNRRLVVFDMDSTLITSEVIDELAIEA
GSGEKVAEITEQAMRGEIDFTESLQMRVSTLKGLDESVLQKVAKRLQLTEGAETLFYN
LHNLGFKTAIISGGFTYFGHYLQKKLTIDYVYANTLEIEGGKLTGKVLGEVVDGKRKA
ALLEHIAREEKISLDQTIAVGDGANDLPMLGKAGLGIAFRAKPIVKESAKQAISTLGL
DAILYLMGFRDRESLKKRKG"
misc_feature complement(351402..351626)
/locus_tag="Cphamn1_0341"
/note="CT domains found N-terminal of phosphoserine
phosphatase (PSP, SerB); Region: ACT_PSP_1; cd04870"
/db_xref="CDD:153142"
misc_feature complement(351093..351347)
/locus_tag="Cphamn1_0341"
/note="ACT domains found N-terminal of phosphoserine
phosphatase (PSP, SerB); Region: ACT_PSP_2; cd04871"
/db_xref="CDD:153143"
misc_feature complement(350454..351110)
/locus_tag="Cphamn1_0341"
/note="phosphoserine phosphatase SerB; Region: serB;
TIGR00338"
/db_xref="CDD:232927"
misc_feature complement(<351024..>351098)
/locus_tag="Cphamn1_0341"
/note="Acid Phosphatase; Region: Acid_PPase; cl17256"
/db_xref="CDD:247810"
misc_feature complement(350532..350909)
/locus_tag="Cphamn1_0341"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(350787..350789)
/locus_tag="Cphamn1_0341"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(351647..353191)
/gene="guaA"
/locus_tag="Cphamn1_0342"
/db_xref="GeneID:6374002"
CDS complement(351647..353191)
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="contains glutamine-hydrolyzing domain and glutamine
amidotransferase; GMP-binding domain; functions to produce
GMP from XMP in the IMP pathway"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_001958791.1"
/db_xref="GI:189499321"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR001317"
/db_xref="InterPro:IPR001674"
/db_xref="InterPro:IPR004479"
/db_xref="InterPro:IPR004739"
/db_xref="InterPro:IPR006220"
/db_xref="InterPro:IPR011702"
/db_xref="InterPro:IPR012998"
/db_xref="GeneID:6374002"
/translation="MHSVLVLDFGSQYTQLIARRIREIGIYSEIVPYNTPLEKIREHN
PGAIILSGGPSSVYGESAFHPDEGIFKLGVPILGICYGLQVIATHFGGSVDSSAKQEF
GRAEIQVERHDGNPQSMLFKDIPDSHVWMSHGDKVVRMPEGFRVTASSGNSEMCAIEA
SGDKAALKVFGLQFHPEVQHTLYGKQLLSNFLLDIAGLTPDWSPKSFIEHQIEEIRTT
VGKNTVICGISGGVDSTVAAVLVSKAIGKQLHCVFVDNGLLRKHEGDKVMKILKPLGL
SVNLVDAEEIFLKRLKSIASPEKKRKIIGRTFIHIFEEQIHEEKFLVQGTLYPDVIES
VSVKGPSETIKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELGIDEDILMRHPF
PGPGLAVRVLGSVSKTRLDILRDADEIFLEELKSQNLYHHVWQAFSVLLPVQSVGVMG
DKRTYENVLALRAVESSDGMTADWAHLPHEFLSRVSNRIINEVRGINRVAYDISSKPP
ATIEWE"
misc_feature complement(351650..353191)
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:234614"
misc_feature complement(352616..353182)
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature complement(order(352667..352669,352796..352798,
352949..352954,353030..353038,353156..353161))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature complement(order(352949..352951,353033..353035))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature complement(order(352661..352663,352667..352669,
352952..352954))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature complement(order(352673..352675,352793..352795,
352940..352942))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature complement(351653..352522)
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:238955"
misc_feature complement(order(351983..352027,352043..352117,
352130..352159,352184..352231,352238..352351,
352379..352411,352415..352447,352451..352522))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature complement(order(352082..352084,352430..352432,
352436..352438,352490..352501,352505..352513))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature complement(order(351653..351721,351725..351751,
351770..351817,351827..351859,351866..351895,
351920..351958))
/gene="guaA"
/locus_tag="Cphamn1_0342"
/note="Dimerization subdomain; other site"
/db_xref="CDD:238955"
gene complement(353217..355541)
/locus_tag="Cphamn1_0343"
/db_xref="GeneID:6374003"
CDS complement(353217..355541)
/locus_tag="Cphamn1_0343"
/EC_number="2.4.1.129"
/note="KEGG: pvi:Cvib_1588 penicillin-binding protein, 1A
family;
TIGRFAM: penicillin-binding protein, 1A family;
PFAM: glycosyl transferase family 51; penicillin-binding
protein transpeptidase"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_001958792.1"
/db_xref="GI:189499322"
/db_xref="InterPro:IPR001264"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR011816"
/db_xref="GeneID:6374003"
/translation="MNSDSANMNSVNRNRMSKNSNGKKKKRSALPAMLFIGIILISSL
AGLIYLFSLLKSLPGLEELENPNPELASLVYSSDGKLIHKYFLKNRTYVPLDSISDYV
PEALIATEDLAFYDHWGFDVRRFVLVIGENLIKGRTRWHGASTITQQLAKNLYLTQER
TITRKIKEFFTSVELERTYTKDEILALYLNTVYFGSGAYGVEAASWTYFNKPARSLTL
PESATLIGILKSPRAYDPSRNPEDSVNRRNLILSLMEKAGVISEQEREKAQKSKLVLD
YTPVTNNGKAPYFTEYIRQTLKPISRQHDINVYSDGLSIYTTLDSRMQSYAQEAVKEH
IAWVQEQFDRSWRWPEKLKNQIISETPRYRELVKNGTSAGDALRELKGDSKWLKKVLF
DKTRVQVALVAIEPSNGAIKAWVGGSEFSPDDYQYQYDHVWQAKRQPGSTFKPFVYAA
AIDKGIPANYRILNQPLAIKTGDKVWIAKNADHKSGGLTTLRHALSKSVNQVTVRLMH
EFLSPSEVISYANKMGIRSKLEPNMSISLGTSEVTPLELASAFGTFANNGVWVEPVSI
SRIEDKFRNTVSESRPLTRTAIDSTTNYVMVSMLQDVIKRGTGVAVPSRYGLNIESGG
KTGTTQNLKDAWFVGFTPQVTAAVWVGFDDERLSFTSMSYGQGARAALPIWAKFMKKC
YADTTLGLENRYFHMPETVIAVPVSRRTNQPAELFTDDVYVEYFTSKGFKKYQQGLIY
SPPEEESTNTENENDSSRGPLERLIEDLIGEETE"
sig_peptide complement(355404..355541)
/locus_tag="Cphamn1_0343"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.995) with cleavage site probability 0.817 at
residue 46"
misc_feature complement(354780..355310)
/locus_tag="Cphamn1_0343"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(353487..355277)
/locus_tag="Cphamn1_0343"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:233710"
misc_feature complement(353502..354344)
/locus_tag="Cphamn1_0343"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:216183"
gene complement(355538..356464)
/locus_tag="Cphamn1_0344"
/db_xref="GeneID:6374004"
CDS complement(355538..356464)
/locus_tag="Cphamn1_0344"
/note="PFAM: alpha/beta hydrolase fold;
KEGG: cte:CT0177 proline iminopeptidase"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase fold protein"
/protein_id="YP_001958793.1"
/db_xref="GI:189499323"
/db_xref="InterPro:IPR000073"
/db_xref="InterPro:IPR003089"
/db_xref="InterPro:IPR008262"
/db_xref="GeneID:6374004"
/translation="MSYFSNDRCNLFYNDTAENNPALREKPAVLFVNGWAISSRYWKP
VVEKLTPEYRCITYDQSGTGNTVIETDHKPSFTIEGFADEASSLIEHLGLNKKRNLHI
IGHSMGGMVATELSLRFRDSLLSSTILACGIFEETPFTSVGLLFLGGLIDFSMNFRNI
FQVKPLKSLFIKRAATVDIGKEYSDIIVEDFTNSDKDATNAVGKFSIDRDVLRRYTRQ
VVEISSPVLCCVGMADHTIPPEGTVTLYETRRKKTDAPTRLVQFMHLGHLPMLENTGM
FSEQLKKHFEFADDFYKNNSPDDRGNERLQIV"
misc_feature complement(355607..356464)
/locus_tag="Cphamn1_0344"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 356741..356814
/locus_tag="Cphamn1_R0019"
/note="tRNA-Pro1"
/db_xref="GeneID:6374005"
tRNA 356741..356814
/locus_tag="Cphamn1_R0019"
/product="tRNA-Pro"
/db_xref="GeneID:6374005"
gene 356872..357342
/locus_tag="Cphamn1_0345"
/db_xref="GeneID:6374006"
CDS 356872..357342
/locus_tag="Cphamn1_0345"
/note="PFAM: transcription activator effector binding;
KEGG: cte:CT0179 hypothetical protein"
/codon_start=1
/transl_table=11
/product="transcription activator effector binding"
/protein_id="YP_001958794.1"
/db_xref="GI:189499324"
/db_xref="InterPro:IPR010499"
/db_xref="GeneID:6374006"
/translation="MDFECSFHCELQNLEPHPALTIRLKTKAGDIAEVFDEGYGAIAA
YLKSKGKEPLGPPFAIYFNMEMENLEVEFGFPVEAGITGEESIVSSMTPSGKAASSLY
IGPYEEAEPVYDALIAWIRENNFEANGIAYEIYLNDPAVTPPEQLKTQVNLMLV"
misc_feature 356911..357324
/locus_tag="Cphamn1_0345"
/note="Transcriptional regulator, effector-binding
domain/component [Transcription / Signal transduction
mechanisms]; Region: COG4978"
/db_xref="CDD:227312"
gene 357617..359101
/locus_tag="Cphamn1_0346"
/db_xref="GeneID:6374007"
CDS 357617..359101
/locus_tag="Cphamn1_0346"
/note="PFAM: amine oxidase; FAD dependent oxidoreductase;
KEGG: cte:CT0180 lycopene cyclase"
/codon_start=1
/transl_table=11
/product="amine oxidase"
/protein_id="YP_001958795.1"
/db_xref="GI:189499325"
/db_xref="InterPro:IPR002937"
/db_xref="InterPro:IPR003042"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR008151"
/db_xref="GeneID:6374007"
/translation="MSEHNRVIVIGAGIGGLTVGALLARKGYSVSIVESRAYPGGCAA
TFERQGYRFDAGATVGCGFHKNGPLALLGEDLGIAWPVMTCPAAWDFIQGDRSIHLSH
SRQEILAQFPDSRLFWDEQDRIASLLWSLAGDTLPWPPAGLSELDVLFRKLIRKAPSL
APMMPLVNKSALQWLREHGLDSDSDFVRFIDAQLLISVQTTSEHANALNAAIALDLPS
KGTHRLTGGIGSVSEKLAEAVESAGGRLIYNRSVENLERKGRRVVSLNTSDGARHPAD
IVVANLTPDSLRLLFDPHASGANRIKKGPKSGWSAFVLYLGVEESVFREGDAGHVQIV
AGSGDLGEGNSIFVSVSPSDDSLRAPEGFRAVTVSTHTRPEKWFEAKERGDGAYEELK
ASYTKKVMSLISQHFENMEGRIAVMSAATPVTWERYTGRSFGYVGGYAQTSLFGVRGP
GTPFRNLFLAGDSVFPGQSLPGVVTSSRRVAALVERKYGPRSKK"
misc_feature 357635..359071
/locus_tag="Cphamn1_0346"
/note="C-3',4' desaturase CrtD; Region: desat_CrtD;
TIGR02733"
/db_xref="CDD:233987"
misc_feature 357641..357820
/locus_tag="Cphamn1_0346"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene 359303..360565
/locus_tag="Cphamn1_0347"
/db_xref="GeneID:6374008"
CDS 359303..360565
/locus_tag="Cphamn1_0347"
/note="KEGG: cch:Cag_1575 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958796.1"
/db_xref="GI:189499326"
/db_xref="GeneID:6374008"
/translation="MDVLDKLEILSGSARYDASCASSGSSRGGGGEGTLGSTSKGGIC
HSWSDDGRCISLLKVLYSNDCSYDCVYCVNRRSNPHPRTSFTVHELVELTIRFYRRNY
IEGLFLSSAVMQSPESTMESMVEVIRKLRVEESFAGYIHMKVIPGCSEDLVRKAGFYA
DRLSVNIELPSGDSLKLLAPQKQREDILKPMACLGDAIIASRKERKKNRKAPAFSPAG
QSTQMIIGASPESDFRILSLSQGLYKQMHLKRVYYSAFVPVNSDNLLPVHAKPPLQRE
HRLYQADWLLRNYGFTADEILSEESPFLDEHLDPKASWALRNPGFFPVDVNRDGYFAL
LRVPGIGVTSAKRIVAARRFAVITPEGLKNIGVVMKRARYFITCSGRPVERLFDRPAL
VRRKLLIAETGKDPRALKQRQLDFFSNK"
misc_feature 359309..360553
/locus_tag="Cphamn1_0347"
/note="putative DNA modification/repair radical SAM
protein; Region: rSAM_link_UDG; TIGR03916"
/db_xref="CDD:188431"
gene 360635..360997
/locus_tag="Cphamn1_0348"
/pseudo
/db_xref="GeneID:6374009"
gene 361058..361789
/locus_tag="Cphamn1_0349"
/db_xref="GeneID:6374010"
CDS 361058..361789
/locus_tag="Cphamn1_0349"
/note="KEGG: cte:CT0182 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958797.1"
/db_xref="GI:189499327"
/db_xref="GeneID:6374010"
/translation="MIRYRYDGTTEGLISAIDHILRHEPDPQTVELEVQEQTLFDEGL
FIAANSDRTDVLLRRFSSAFPESARQVMYVILSEKEGMETSLLHYIHMVSVYGSRIEA
HRTHPAVHDVHVLARKVSREIHRMKGLLRFAMLEDGSYLAKMEPDFNIIQPLSRFFTQ
RLRTQQWFIYDVKRSLVSHWKGRKLDFGTLESFRAPELSDEEKDVQKLWKTFFRNVAI
PERKNPGLQRSFMPMKYWKYLVEKT"
misc_feature 361067..361783
/locus_tag="Cphamn1_0349"
/note="probable DNA metabolism protein; Region:
SAM_7_link_chp; TIGR03915"
/db_xref="CDD:234394"
gene 361810..362202
/locus_tag="Cphamn1_0350"
/db_xref="GeneID:6374011"
CDS 361810..362202
/locus_tag="Cphamn1_0350"
/note="KEGG: cte:CT0188 C-type cytochrome"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958798.1"
/db_xref="GI:189499328"
/db_xref="GeneID:6374011"
/translation="MGYILYEPQQYSNVNHIREDYMAKKGTGARYLLFGALFAVAACA
SPHGAVPVAEGEKLFNDPQFAGSTNDSSCSSCHPGGKGLENAASNPQLLTVINTCITG
PLGGQAIAEDSEEMLALKGYIESLGGNE"
misc_feature 361903..>362082
/locus_tag="Cphamn1_0350"
/note="Cytochrome c; Region: Cytochrom_C; cl11414"
/db_xref="CDD:245607"
gene 362207..363034
/locus_tag="Cphamn1_0351"
/db_xref="GeneID:6374012"
CDS 362207..363034
/locus_tag="Cphamn1_0351"
/note="PFAM: dTDP-4-dehydrorhamnose reductase;
KEGG: pvi:Cvib_1582 NAD-dependent epimerase/dehydratase"
/codon_start=1
/transl_table=11
/product="dTDP-4-dehydrorhamnose reductase"
/protein_id="YP_001958799.1"
/db_xref="GI:189499329"
/db_xref="InterPro:IPR005913"
/db_xref="GeneID:6374012"
/translation="MREQRVTICGCGWLGLPLGKFLADKGCIVKGSTTSEEKFRLLQE
AGIQPFRVSLDPSFTGDDPESLMESDILVLNVPPARRPDIVEYHQEQIASLIRVVKAS
PVTNVVFISSTSVYPSLNREVTEEDAVNPEALSGQALLAVEKMLFEERSFRTTVLRFC
GLMGYDRNPVNFLGRMTSLGNANQPANLIHRDDCIGVIYEVIRQEVWGEIFNACSPGH
PSRREYYERAAERSGKPMPPLAEEERNPAFKIIDSSRLERMLDYRFRVPDPLDLPEE"
misc_feature 362222..362986
/locus_tag="Cphamn1_0351"
/note="atypical (a) SDRs, subgroup 4; Region: SDR_a4;
cd05266"
/db_xref="CDD:187576"
misc_feature 362234..363007
/locus_tag="Cphamn1_0351"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature order(362234..362236,362240..362248,362303..362311,
362429..362437,362534..362542,362609..362611,
362621..362623,362681..362692)
/locus_tag="Cphamn1_0351"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187576"
gene 363131..363877
/locus_tag="Cphamn1_0352"
/db_xref="GeneID:6374013"
CDS 363131..363877
/locus_tag="Cphamn1_0352"
/note="KEGG: cte:CT0471 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958800.1"
/db_xref="GI:189499330"
/db_xref="GeneID:6374013"
/translation="MFFSAPIHAAHPLITDDTGTQGAGRFQIELNSEFIDDEEGASGE
TGGEVAAALSCGLADNVDLVLGVPWMWYEVKEGGATLADEDGIGDLSLEVKWRFFEYE
DRGLSIALKPGVTFPTGDDGKGLGNGKVSGGSTLIVSKEGVLGKLHLNFAYTRNEYGL
EEDDLLLRNDLWHASFAGEINLTADITAVGNIGVETNPERGAEEDPAFFIGGLIYSVT
KDFDVDAGVKWGLNDAESDRAFLAGIAARF"
misc_feature 363188..363874
/locus_tag="Cphamn1_0352"
/note="Putative MetA-pathway of phenol degradation;
Region: Phenol_MetA_deg; pfam13557"
/db_xref="CDD:222218"
gene 363884..365254
/locus_tag="Cphamn1_0353"
/db_xref="GeneID:6374014"
CDS 363884..365254
/locus_tag="Cphamn1_0353"
/note="TIGRFAM: cobyrinic acid a,c-diamide synthase;
PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain
protein glutamine amidotransferase;
KEGG: pvi:Cvib_0809 cobyrinate a,c-diamide synthase /
hydrogenobyrinic acid a,c-diamide synthase
(glutamine-hydrolysing)"
/codon_start=1
/transl_table=11
/product="cobyrinic acid a,c-diamide synthase"
/protein_id="YP_001958801.1"
/db_xref="GI:189499331"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR004484"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:6374014"
/translation="MNKKLSAFLLAAPSSGSGKTTLSLALLRLFAERGLRVQPFKCGP
DYLDTMLHTRAAAKGGEGHRGINLDTFMAGEAHVRNVFVRKSAEADAAVVECVMGLFD
GAVKADGSSASIAKLLELPVVLVVDAKAVGYSVAPLLYGFKHFDPDVRIAGVIFNRVN
SESHYRFLKDACLDVGVEPLGYVPRNDAMTLPERYLGLNTDAGAGQEAAIVAMAEHVR
KTLDIERLLEIVTVDVSGAAAPLLPVRGNGSAVIAVARDEAFNFLYAENLDVLREYGS
IEYFSPLDDARLPGADMIYLAGGYPELYAGKLSDNLAMRREMLDFSTKGGVIYAECGG
MMYLGRSMTDHEGNRFPMCGVFDMDTSMQEAGLHLGYRKVRLNDPAYGGELRGHEFHY
SAITRKGALNNVASIASARNKPVDTALFRFCNTFASYIHLYWGETRDFPGYLLSRGGG
SVGSRQ"
sig_peptide 363884..363940
/locus_tag="Cphamn1_0353"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.996) with cleavage site probability 0.661 at
residue 19"
misc_feature 363902..365188
/locus_tag="Cphamn1_0353"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:234896"
misc_feature 363926..>363994
/locus_tag="Cphamn1_0353"
/note="The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the energy
from hydrolysis of NTP to transfer electron or ion;
Region: Fer4_NifH; cl17203"
/db_xref="CDD:247757"
misc_feature 364637..365206
/locus_tag="Cphamn1_0353"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature order(364877..364879,365180..365182,365186..365188)
/locus_tag="Cphamn1_0353"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene complement(365322..365792)
/locus_tag="Cphamn1_0354"
/db_xref="GeneID:6374015"
CDS complement(365322..365792)
/locus_tag="Cphamn1_0354"
/note="KEGG: cte:CT0190 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958802.1"
/db_xref="GI:189499332"
/db_xref="GeneID:6374015"
/translation="MEITHILIDDKNPVHRELSIYRTGEISRIRLSDTGYRTYGTLAI
SAHNHTALFHFDLIESLNALPFISETGQGLDSWDEAFLDHSQLEKMLGILREAERQID
PEKKEKALLGWHDKPLAAAYWREIDPKEFLGFLEELKTFAGKAMEEKYDLEFIL"
gene 366156..368717
/locus_tag="Cphamn1_0355"
/db_xref="GeneID:6374016"
CDS 366156..368717
/locus_tag="Cphamn1_0355"
/note="PFAM: UvrB/UvrC protein; AAA ATPase central domain
protein; Clp domain protein; ATPase associated with
various cellular activities AAA_5; ATPase AAA-2 domain
protein;
SMART: AAA ATPase;
KEGG: cte:CT0191 ATP-dependent Clp protease, ATP-binding
subunit ClpC"
/codon_start=1
/transl_table=11
/product="ATPase AAA"
/protein_id="YP_001958803.1"
/db_xref="GI:189499333"
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004176"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013093"
/db_xref="GeneID:6374016"
/translation="MDGNFSNRVQDVIRHSREEALRLGHDYIGTEHLLLGLIKEGEGI
AARILKNLHIDLFKLKQKIEESTTQKVAASQMGNVPLTKQAEKVLKITYLEAKICKSN
IIGTEHLLLSILKGEDNVAAQILEQFGITYDAVRDELMTISSGKGDSGEPPIEGSFSS
GPEKFSKKAEQKKGERTKTPVLDNFGRDITRLAMDDKLDPIIGREKEIERVAQVLSRR
KKNNPVLIGEPGVGKTAIAEGLALKIVQRKVSRILYDKKVVALDLAALVAGTKYRGQF
EERMKALMNELERSRDVILFIDELHTIVGAGGASGSLDASNIFKPALARGELQCIGAT
TLDEYRQYIEKDGALDRRFQKIMVEPTNVDETIQILNNIKSKYEAHHHVYYDSDAIDK
AVRLSERYITDRFLPDKAIDVMDEAGARVHLSNIHVPKNILDLEQSVEEIKTEKNRVV
KMQNFEEAAMLRDKEKTLLESLEQAKQEWEARAADTVYDVTEADISSVVAMMTGIPVI
KVAQSESKKLLNMSQELKKEVIGQDEAIDKITRAIQRTRAGLKDPARPIGSFIFLGPT
GVGKTELAKSLTRYLFDSEDALIRADMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEK
VRRKPYSVVLIDEIEKAHPDVFNILLQVLDEGVLTDGLGRKVDFRNTIIIMTSNIGAK
DIKSIGSGMGFAPGDSVESSYKSMKSTVQDALKRVFNPEFLNRIDDTVVFHQLEKKHI
FEIIDIIAGKLFKRLHEMGIEVSIDARAKEYLVEKGYDQKFGARPLKRALQRNVEDSL
AEEMLKGKFTEGSTIRISYDAKNDKLKFTKASDSSKKKKKLTEPIDEEPSNGKDQ"
misc_feature 366168..368609
/locus_tag="Cphamn1_0355"
/note="ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones]; Region: clpA; COG0542"
/db_xref="CDD:223616"
misc_feature 366201..366350
/locus_tag="Cphamn1_0355"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 366438..366581
/locus_tag="Cphamn1_0355"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:217254"
misc_feature 366759..367235
/locus_tag="Cphamn1_0355"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 366834..366857
/locus_tag="Cphamn1_0355"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(366837..366860,367047..367049,367158..367160)
/locus_tag="Cphamn1_0355"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 367035..367052
/locus_tag="Cphamn1_0355"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 367209..367211
/locus_tag="Cphamn1_0355"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 367743..368189
/locus_tag="Cphamn1_0355"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 367845..367868
/locus_tag="Cphamn1_0355"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(367848..367871,368061..368063,368187..368189)
/locus_tag="Cphamn1_0355"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 368049..368066
/locus_tag="Cphamn1_0355"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 368358..368600
/locus_tag="Cphamn1_0355"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(369040..370431)
/locus_tag="Cphamn1_0356"
/db_xref="GeneID:6374017"
CDS complement(369040..370431)
/locus_tag="Cphamn1_0356"
/note="catalyzes the formation of L-tryptophan from indole
and L-serine"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_001958804.1"
/db_xref="GI:189499334"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR006316"
/db_xref="InterPro:IPR006653"
/db_xref="GeneID:6374017"
/translation="MSSEPTKILLHEDEMPRQWYNIQADLPTPIPLPLGMDGKPINPE
DLAPVFPMNIIEQELSTERWITIPEKVRELLTLWRPSPLYRAKGLEKALNTPARIYYK
NEGVSPAGSHKPNTAVAQAYYNKEFGIKYLTTETGAGQWGSALAMSCKLVGIECKVFM
VRISFDQKPFRKIMMKTWGADCIASPSETTGIGRKILAEQPDTPGSLGIAISEAIEEA
VQREDTRYSLGSVLNHVMLHQTIIGLEAQKQFDKINRYPDIVIGCAGGGSNFAGISFP
FIHDKINGKDLRVIATEPEACPTLTRGPYVYDSGDVAKMTPLLAMHSLGHGFIPPSIH
AGGLRYHGMAPLVSHVLQQGLIEANALPQTECYKAALLFAHTEGFIPAPETSHAIAQT
IREANRAREEGKEKTILMNWSGHGLMDLQGYDAFMSGKLEDYPLPEELLQQSLADIKD
HPKPPVSPCHSRA"
misc_feature complement(369169..370305)
/locus_tag="Cphamn1_0356"
/note="tryptophan synthase, beta subunit; Region: trpB;
TIGR00263"
/db_xref="CDD:232897"
misc_feature complement(369163..370284)
/locus_tag="Cphamn1_0356"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature complement(order(369193..369195,369280..369282,
369625..369639,369742..369744,370012..370014,
370093..370098))
/locus_tag="Cphamn1_0356"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature complement(370093..370095)
/locus_tag="Cphamn1_0356"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene complement(370525..370613)
/locus_tag="Cphamn1_R0020"
/note="tRNA-Leu5"
/db_xref="GeneID:6374018"
tRNA complement(370525..370613)
/locus_tag="Cphamn1_R0020"
/product="tRNA-Leu"
/db_xref="GeneID:6374018"
gene 370824..371798
/locus_tag="Cphamn1_0357"
/db_xref="GeneID:6374019"
CDS 370824..371798
/locus_tag="Cphamn1_0357"
/note="TIGRFAM: lipopolysaccharide heptosyltransferase II;
PFAM: glycosyl transferase family 9;
KEGG: plt:Plut_1796 lipopolysaccharide heptosyltransferase
II"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide heptosyltransferase II"
/protein_id="YP_001958805.1"
/db_xref="GI:189499335"
/db_xref="InterPro:IPR002201"
/db_xref="InterPro:IPR011910"
/db_xref="GeneID:6374019"
/translation="MAPSVILMPNWIGDLLLALSVVMKMPEERLSGTTLLVPQQMTGL
VGALSTLPHLPFARSSAEERRRTVEEVRCRGFRSIYLLPFSFSSALFAVKTGIPHRRG
LSREFRRLLLTDPLPGKLRDRSHHILREYAEILQTAYVSPEKWEGVPVPPEKAYPGSI
VFCPGAKYGPAKQWNNFPDLGRQLTAERIVVLGTNEERAAAGEIVRSAPGRVTDLTGR
TSLQEAAAVMSAARAVVSNDSGLMHLAGFLGVPVIGIFGSTSPAWTRPLGRHAVTMSG
SEPCAPCFRRECRYGHYRCLDAVTTADVMTEIAKLSSLHPIPPGKRGK"
misc_feature 370836..371753
/locus_tag="Cphamn1_0357"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature 371046..371702
/locus_tag="Cphamn1_0357"
/note="Glycosyltransferase family 9 (heptosyltransferase);
Region: Glyco_transf_9; pfam01075"
/db_xref="CDD:216285"
misc_feature order(371307..371312,371397..371399,371493..371498,
371532..371534,371541..371546,371553..371555)
/locus_tag="Cphamn1_0357"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(371849..372916)
/locus_tag="Cphamn1_0358"
/db_xref="GeneID:6374020"
CDS complement(371849..372916)
/locus_tag="Cphamn1_0358"
/note="TIGRFAM: thiamine-monophosphate kinase;
PFAM: AIR synthase related protein domain protein;
KEGG: cte:CT0199 thiamine-monophosphate kinase"
/codon_start=1
/transl_table=11
/product="thiamine-monophosphate kinase"
/protein_id="YP_001958806.1"
/db_xref="GI:189499336"
/db_xref="InterPro:IPR006283"
/db_xref="InterPro:IPR010918"
/db_xref="GeneID:6374020"
/translation="MSFKPISDIGEFGLIDRIASITAPTLETTPGITEGIGDDCAVYE
ISRSMVQVTTTDLLVEHVHFDLLTTPLHHLGSKAISVNVSDICAMNAKPRYALVSIAI
PSKTSVDLVETLYRGMSETSRIYGLAIAGGDTSLCPGAMVISVTVAGDIEKENITYRK
GAEPGDMICVSGTLGGAAAGLRVLMREKSVMMEHIRHGETYDKDVMSNLSDYDDAIRQ
QLLPSARMDIIGFFEKENIVPTSMIDISDGLASDLAHICKRSGVGAQIEESRIPILSQ
TRHIADEFQEDAMNYALTGGEDYQLLFTLKPENFSAISSHPDISVIGKITPKDDGLLL
RDIYGMTVDIQSLSGFDHFSG"
misc_feature complement(371858..372898)
/locus_tag="Cphamn1_0358"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:235583"
misc_feature complement(371939..372889)
/locus_tag="Cphamn1_0358"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature complement(order(372176..372181,372185..372187,
372440..372442,372518..372526,372572..372574,
372623..372625,372662..372664,372800..372808,
372872..372874))
/locus_tag="Cphamn1_0358"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature complement(order(372479..372481,372485..372487,
372509..372520,372527..372529,372572..372574,
372740..372742,372746..372754,372797..372799,
372863..372865))
/locus_tag="Cphamn1_0358"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene 372994..373938
/locus_tag="Cphamn1_0359"
/db_xref="GeneID:6374021"
CDS 372994..373938
/locus_tag="Cphamn1_0359"
/note="KEGG: cch:Cag_1212 cell division transporter
substrate-binding protein FtsY;
TIGRFAM: signal recognition particle-docking protein FtsY;
PFAM: GTP-binding signal recognition particle SRP54 G-
domain; GTP-binding signal recognition particle SRP54
helical bundle;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="signal recognition particle-docking protein
FtsY"
/protein_id="YP_001958807.1"
/db_xref="GI:189499337"
/db_xref="InterPro:IPR000897"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004390"
/db_xref="InterPro:IPR013822"
/db_xref="GeneID:6374021"
/translation="MGFFDKLKISRLKDGLTKTRESIRENISRITQGRTDIDESFLEE
LENILIAADVGVETTLNIVERITEKAEKETYHSEDELNSMLMKVMEEMLLDTPDSHPV
DFDADLPEKPYVILVVGVNGVGKTTSIAKLAHNYNRAGKKVIIAAADTFRAAAVQQLQ
IWADRAGVPMVSQGQNADPASVVFDAVSSAVAKGADVVLVDTAGRLHNKSHLMEELAK
IMRVAKKKVAAAPHEVLLVLDGTTGQNAVSQAKEFAKCVQVSGLIVTKLDGSAKGGIV
LSISREMELPVKYIGVGEKIDDLQIFDRGKFVEALLGK"
misc_feature 373000..373935
/locus_tag="Cphamn1_0359"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:236686"
misc_feature 373027..373260
/locus_tag="Cphamn1_0359"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; pfam02881"
/db_xref="CDD:217266"
misc_feature 373330..373866
/locus_tag="Cphamn1_0359"
/note="The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the energy
from hydrolysis of NTP to transfer electron or ion;
Region: Fer4_NifH; cl17203"
/db_xref="CDD:247757"
gene complement(374291..374884)
/locus_tag="Cphamn1_0360"
/db_xref="GeneID:6374022"
CDS complement(374291..374884)
/locus_tag="Cphamn1_0360"
/note="KEGG: cch:Cag_1211 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958808.1"
/db_xref="GI:189499338"
/db_xref="GeneID:6374022"
/translation="MQIRCFGNGSRQGTYILFIHLSKESSLNFGNFLGGKKIPLEPGF
YLYIGSALNKKPSSMPLARRLVRHASRSNGKPAHEAREYMIRFFQKHQLATADLHPPA
NKKLHWHIDYLLDCPYARITTAFVIRSPLRLETAVSDLAASLDETCIIARKLGARDTR
SGTHLLGIRDLDSCLEKLEHAIPLLCRNNRIPSSPTQ"
misc_feature complement(374387..374851)
/locus_tag="Cphamn1_0360"
/note="GIY-YIG domain of hypothetical proteins from
archaea and their bacterial homologs; Region:
GIY-YIG_COG1833; cd10441"
/db_xref="CDD:198388"
misc_feature complement(order(374738..374746,374840..374848))
/locus_tag="Cphamn1_0360"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198388"
misc_feature complement(order(374411..374413,374483..374485,
374681..374683,374693..374695,374738..374740,
374744..374746,374840..374842))
/locus_tag="Cphamn1_0360"
/note="putative active site [active]"
/db_xref="CDD:198388"
misc_feature complement(374483..374485)
/locus_tag="Cphamn1_0360"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198388"
gene 374949..375611
/locus_tag="Cphamn1_0361"
/db_xref="GeneID:6374023"
CDS 374949..375611
/locus_tag="Cphamn1_0361"
/EC_number="2.1.1.77"
/note="KEGG: cte:CT0202 protein-L-isoaspartate
(D-aspartate) O-methyltransferase;
TIGRFAM: protein-L-isoaspartate O-methyltransferase;
PFAM: protein-L-isoaspartate(D-aspartate)
O-methyltransferase"
/codon_start=1
/transl_table=11
/product="protein-L-isoaspartate O-methyltransferase"
/protein_id="YP_001958809.1"
/db_xref="GI:189499339"
/db_xref="InterPro:IPR000682"
/db_xref="GeneID:6374023"
/translation="MAEQQDARVYSDRRHEMVEQLKRYGITNSKVLEAFNAVERHLFF
DAAYRDFAYDDGAFSIGYGQTISQPYTVAYMTSMLVERCPSGKVLEIGTGSGYQAAIL
EYMGYSVYTVERIEALFRRSSLILGALGLTVHQILGDGTLGWEEEAPYSGIIVTAGAP
EPPSALLGQLAEEGVLIIPIGDSTGQRMTVFTRRGEMFQREEFHTFAFVPLIGREGWR
EE"
misc_feature 374964..375599
/locus_tag="Cphamn1_0361"
/note="protein-L-isoaspartate O-methyltransferase;
Reviewed; Region: pcm; PRK00312"
/db_xref="CDD:178974"
misc_feature 375198..375482
/locus_tag="Cphamn1_0361"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl17173"
/db_xref="CDD:247727"
misc_feature order(375219..375239,375285..375290,375360..375368,
375414..375416)
/locus_tag="Cphamn1_0361"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 375704..377809
/locus_tag="Cphamn1_0362"
/db_xref="GeneID:6374024"
CDS 375704..377809
/locus_tag="Cphamn1_0362"
/note="PFAM: PpiC-type peptidyl-prolyl cis-trans
isomerase;
KEGG: pvi:Cvib_1572 PpiC-type peptidyl-prolyl cis-trans
isomerase"
/codon_start=1
/transl_table=11
/product="PpiC-type peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_001958810.1"
/db_xref="GI:189499340"
/db_xref="InterPro:IPR000297"
/db_xref="GeneID:6374024"
/translation="MGVITTLREKLHFVLYALLAAFLALIVFEWGMDFSGFSGGGTLA
GKVNGTPVEYRQYEQVYDRLVDDFRSRSPQAELTDGLERELRQRAWDIVVNQIILDEQ
FEKYNIRVSDEEVLAAVESDNPPMVILQNFINPETGSIDREKLDSSRMDPENRDVWLS
IEDIIRRELMVNKLQGTLQAMVKVSDSELDALVERELGTFSASFAVFPYSAVGGDSLY
SVADPEIKQYYEENRDLFRQEPTRSLEYVIFSAIPTERDSLTIKTELASLAEDFTLAA
DDSAFVSLQSDRADTYDKVYSRADFSVQAGDDLFADSGLKAGALIGPIVDRSSYRMIK
VQEVMKGDTVARASHILIPFSKGDVSGEKEARGLAEKIMQEIRSGKKFADLAMQYSQD
PGSAANGGDLGWFSRTAMVPEFAQVVFRAATGTLAGPVETQYGLHIIKVTGKDNSAIA
CSEIVRNIRPSGATLENARRKAAEFQIEAEEKGFDRATEIFEKTKNTTGPFTKTGVIP
DIGYNNSIVKFAFNASKGAFSDIVQVDAGFLVLRVAEINDSGFRSLDEGLQDMIRQEL
IVRKKGEALDGRLSLLLKQKNGDLEAVAAAFGGVQVIDADTVRFKEQAVPVYGNDIRL
IEAIIGMEPGTVSKPVAVKGGRALIVLRGKAYPDTADLESEKARLLPMLEKVKQERFI
QDYFTAERRAATIEDMRGL"
misc_feature <375836..376138
/locus_tag="Cphamn1_0362"
/note="SurA N-terminal domain; Region: SurA_N_3; cl07813"
/db_xref="CDD:244798"
misc_feature 376361..376738
/locus_tag="Cphamn1_0362"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
misc_feature 376748..377032
/locus_tag="Cphamn1_0362"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
misc_feature <377111..377371
/locus_tag="Cphamn1_0362"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
gene complement(377815..379590)
/locus_tag="Cphamn1_0363"
/db_xref="GeneID:6374025"
CDS complement(377815..379590)
/locus_tag="Cphamn1_0363"
/note="TIGRFAM: phosphoenolpyruvate-protein
phosphotransferase;
PFAM: PEP-utilizing protein; PEP-utilising protein mobile
region; PEP-utilising protein domain protein;
KEGG: cte:CT0204 phosphoenolpyruvate-protein
phosphotransferase"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate-protein phosphotransferase"
/protein_id="YP_001958811.1"
/db_xref="GI:189499341"
/db_xref="InterPro:IPR000121"
/db_xref="InterPro:IPR006318"
/db_xref="InterPro:IPR008279"
/db_xref="InterPro:IPR008731"
/db_xref="GeneID:6374025"
/translation="MTSQQPSLDQSQEKQFHGIGAAKGIAIGPAYLLINQTPEKPPEK
LPPGTAEHEVNKLICALQRSEKELKKIEAVTTQKLGTAYADLFQAQIMLLHDALFIDK
ITRRILEDRKPAEQIVEEEFEIYLAHFNNSSETLFQERAQDLVDIKNRIIRNLHKHKL
QSKIPEGMIIVSTCLSPADIILFSRNSVKGFITETGGKTSHISLICKSLNIPIIVGLG
NITQKISTGDPLIVDGGSGAAFVHPCEETLRRFQDKITEESITEAEASRFANAPALTK
CGIRLHFYSNIDVKEEIPSIRSAGAEGIGLFRSESLFIESAKPPMESAQTEYYSEMAD
ALNPDPIVVRLFDIGGDKLIYSPISEPNPNLGWRGIRILIDVPEILDNQLLALLKANR
WGNIQILLPMISSLDEIISVRSSLEKHIAALDESGDTIKKPELGAMIEIPAAVEIIDE
ITKAVDFVSIGTNDLTQYTLAVDRNNEIVQDLFEKFHPAIIRQLHKIITTACANGCRV
SICGDMGSDPLALPFLIGCGLKIFSVVSSDISELKTLARYFTVEECRELVTECLSLPT
ASKIKVCLKKFHADRIPETAGKPDG"
misc_feature complement(377860..379500)
/locus_tag="Cphamn1_0363"
/note="Phosphoenolpyruvate-protein kinase (PTS system EI
component in bacteria) [Carbohydrate transport and
metabolism]; Region: PtsA; COG1080"
/db_xref="CDD:224006"
misc_feature complement(379168..379485)
/locus_tag="Cphamn1_0363"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:218623"
misc_feature complement(378889..379101)
/locus_tag="Cphamn1_0363"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature complement(377950..378804)
/locus_tag="Cphamn1_0363"
/note="PEP-utilising enzyme, TIM barrel domain; Region:
PEP-utilizers_C; pfam02896"
/db_xref="CDD:217274"
gene complement(379663..381243)
/locus_tag="Cphamn1_0364"
/db_xref="GeneID:6374026"
CDS complement(379663..381243)
/locus_tag="Cphamn1_0364"
/note="KEGG: cte:CT0205 replicative DNA helicase;
TIGRFAM: replicative DNA helicase;
PFAM: DnaB domain protein helicase domain protein;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_001958812.1"
/db_xref="GI:189499342"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR007692"
/db_xref="InterPro:IPR007693"
/db_xref="InterPro:IPR007694"
/db_xref="GeneID:6374026"
/translation="MKQATDRKHNKPQIDLSKDIDFSQESRIPPYSTEIEQEVLACIL
LEGDPIEQVIQIYGESREKVFYEQRHQLVFKAMLELYQKRQAIDLITVSEELSSMNEL
ANIGGRQYLAELTNKVVSSANIEYYAKLAKEKYLYRKLISISSMISSAAYGSALDVFD
LVELASQQFFGISQAGIKKKASNIKELLKNATRMLENLSSSQMSVTGVSSGYSELDEL
TAGFQPSDLIIIAARPSAGKTALALALARNAAVDFDKPVLFFSLEMAEIQLAVRLMCA
EAYVESQAVRTGRITPEMMGKIINSMDALAESELYIDDTPGISIMELMAKARRMKQEH
DIGMIVVDYLQLVSPVRDGKSNREQEIAQISRSLKALAKELNIPVISLAQLNRSVEQR
SGERKPQLSDLRESGSIEQDADMVIFLSRPEMFGLKNFDDGTSTKDIVEVIIGKQRNG
PVGTVRLRFLKNYGRFLSTSNVYSADTYAEPEPDSSQNASQSNPPVPKSSLPEPPMPP
GEGIPPGESYFAPDDAPF"
misc_feature complement(379846..381162)
/locus_tag="Cphamn1_0364"
/note="replicative DNA helicase; Region: DnaB; TIGR00665"
/db_xref="CDD:233080"
misc_feature complement(380872..381162)
/locus_tag="Cphamn1_0364"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:216111"
misc_feature complement(379861..380604)
/locus_tag="Cphamn1_0364"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:238484"
misc_feature complement(380527..380547)
/locus_tag="Cphamn1_0364"
/note="Walker A motif; other site"
/db_xref="CDD:238484"
misc_feature complement(order(379867..379869,379900..379902,
379981..379983,380092..380094,380218..380220,
380527..380532))
/locus_tag="Cphamn1_0364"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238484"
misc_feature complement(380218..380229)
/locus_tag="Cphamn1_0364"
/note="Walker B motif; other site"
/db_xref="CDD:238484"
misc_feature complement(order(379927..379932,379981..379986,
380071..380097,380170..380178,380200..380205))
/locus_tag="Cphamn1_0364"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:238484"
gene complement(381295..381921)
/locus_tag="Cphamn1_0365"
/db_xref="GeneID:6374027"
CDS complement(381295..381921)
/locus_tag="Cphamn1_0365"
/note="TIGRFAM: phage SPO1 DNA polymerase-related protein;
PFAM: Uracil-DNA glycosylase superfamily;
KEGG: cte:CT0206 DNA polymerase bacteriophage-type"
/codon_start=1
/transl_table=11
/product="phage SPO1 DNA polymerase-like protein"
/protein_id="YP_001958813.1"
/db_xref="GI:189499343"
/db_xref="InterPro:IPR005122"
/db_xref="InterPro:IPR005273"
/db_xref="GeneID:6374027"
/translation="MQESFFEENSSANAQKESAAGAFRNLNDLYEQSKNCRKCRLADT
RTNFVFGEGNPEAKIVVIGEAPGAEEDAQGRPFVGRSGKLLDKILEAIGFSRDDVFIC
NIIKCRPPANRNPLADEITCCMPWLNAQLALLDPAVLLLLGKVAANTLLDNKQSMGNL
RGKIIRWNGYDVIVTYHPAALLRNPNWKRQCWDDVRMLRSHYDKTIRK"
misc_feature complement(381325..381816)
/locus_tag="Cphamn1_0365"
/note="Family 4 Uracil-DNA glycosylase (UDG), found
exclusively in thermophilic organisms; Region:
UDG_F4_TTUDGA_like; cd10030"
/db_xref="CDD:198428"
misc_feature complement(order(381544..381546,381553..381558,
381601..381609,381787..381789,381796..381801,
381805..381810,381814..381816))
/locus_tag="Cphamn1_0365"
/note="Fe-S cluster binding site [ion binding]; other
site"
/db_xref="CDD:198428"
misc_feature complement(order(381391..381393,381613..381615,
381691..381696,381712..381714,381727..381735))
/locus_tag="Cphamn1_0365"
/note="active site"
/db_xref="CDD:198428"
gene complement(382198..383427)
/locus_tag="Cphamn1_0366"
/db_xref="GeneID:6374028"
CDS complement(382198..383427)
/locus_tag="Cphamn1_0366"
/EC_number="4.1.1.36"
/EC_number="6.3.2.5"
/note="KEGG: cte:CT0207 pantothenate metabolism
flavoprotein;
TIGRFAM: phosphopantothenoylcysteine
decarboxylase/phosphopantothenate/cysteine ligase;
PFAM: flavoprotein; DNA/pantothenate metabolism
flavoprotein domain protein"
/codon_start=1
/transl_table=11
/product="phosphopantothenoylcysteine
decarboxylase/phosphopantothenate/cysteine ligase"
/protein_id="YP_001958814.1"
/db_xref="GI:189499344"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR005252"
/db_xref="InterPro:IPR007085"
/db_xref="GeneID:6374028"
/translation="MKLNDKNILLGVCGGIAAYKIPLLIRLLKKQGANVRVVVTRAAT
RFVTELTLSTLSQEPVCQDIFPDGSSTDEWTRHIAIGEWADAYVIAPATANTIAKLAA
GICDDMLSASFITLRPNKPKLLFPAMDGEMFESASVQRNLSWLSEQGCIVVNPESGQL
ASGQCGTGRMPEPETITDVIEQAVTITQNDSVLRGKSVVITAGPTREKIDDVRFISNY
SSGKMGFALAKAAAAKGAEVTLITGPVHLHTPEGVTRLNVESSEEMQNAVREHHTSCD
IFIGAAAVADYRPVEAISGKFRKEHETMEISLVKNPDILAGFSEQKKAHQLAIGFSLE
TAGNLDHAKAKLKQKKLDLIAYNTFDGKTSGFEVDTNMLTLIDNSLSIQELPLLSKQK
AAEKMLDAIEKLLNSSK"
misc_feature complement(382207..383427)
/locus_tag="Cphamn1_0366"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:235513"
misc_feature complement(383014..383412)
/locus_tag="Cphamn1_0366"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:217035"
misc_feature complement(382300..382851)
/locus_tag="Cphamn1_0366"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:217913"
gene complement(383584..388068)
/locus_tag="Cphamn1_0367"
/db_xref="GeneID:6374029"
CDS complement(383584..388068)
/locus_tag="Cphamn1_0367"
/note="KEGG: plt:Plut_1902 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958815.1"
/db_xref="GI:189499345"
/db_xref="GeneID:6374029"
/translation="MERVKKYILGIAVSISALILILAVIVAIILNSGSLDLMAKNRLI
DFFNSEFQGKLNIEEVNLQFPSTIILHQTQLYRENSETPEFTAEKVTLNLNFLRLLSN
FSSITIRSLKADSFFIHLERYPDGSTNIERIFAPRKEQDPDAPGLERFLCNRIDLTNG
SAEYLDFQNKEADPELLTIADISFTGNKLRYSPENFSGIIRNIGFQLPQKNFTLRKGS
AKLSVTNKRLEILDLKAKTGKSSAELSLGLYEFNVFSQENPDRHSSSPAMLNLKAGSI
HTDELSIFFPDLALPPGIYTASGKAEGQLRKIDIRNAVIAHKNSLLRLQGELLNLNQP
DFLGFRLETDSSRISGDFLQTAITDTTIKNLAEPAGDLMISGYGQGNLKEFFTDLSIE
TESGDMLLSLQADTPDDAETGYSGKFTLRDIALHRFLTQDSSSVSGINCTGSFSGTGI
SPHPAEASLSIDLQNSYWQEQMLSGGTLDLNYHDDILSTDVKIAGERMNVALKGSIDW
TKAVPVYEGKGSAVNLDLSKFLRSDGISSNLNFSMLFRGEHFDPEKLNGNISARFSPS
TINDYSLKEGSELSLRIVQKSPTSSIVLKSDFLDFNAEGLYTFREFLSGIQLTASSAA
REAAKNNIWAASPPPPPFAENIEKNFSADYTLTVRDISPLAVFLPVKGYKLSGKATGK
SYRSNGSFHLTSSIRIDRLSNEQGFSIDNATLGVDATYNSEGIVSASIDADASALDAE
KQSIEQLSLTAAYDKSGLQAGLRLRIPEIERSLTTDIRAARSNRLYTIRISDLSITGG
DGAWSLNKDSRIDIGRNFTRFYDLTLRKDKQVISCDGLLSNEVSGLFACSIENLDMQE
LGIFFPESGMQGSLSSTLRVSGSPGAKTATLKITGRELVYDDVIIGNLNLSALHNGER
LRTDFSTGSNLQGPLNDITGTASIPLKVNWFPLKYSIPDNKPVSASASADHLSAEILE
VFLPFFETAEGTIPAKLVVKGKTPDPEIYFSTELKDTEITVTPTETVYLLSGSIVITP
KKADFRDIQIKDVRGGTGRINGSATLENLEASTIDLTASFENLLLFNKQDKKDETSFG
TITGTSDRIRYYGDTAQPVLTGNLLITNADFTLYRTGSNESTKYVGAERFITFVPRYP
EKIDPDQPENPEKPVNPEFYYTLIDIITIKNLRLTSAVPLQYSMIFDRTRGEKLEATL
QNLSLNVNKNQQNYRLFGAVNISSGTYRFSNSNFDLEDGGRIVWNNVEIRDGVMLNLF
GRKYVNASNAQTGESDNVRLLLAIQGTLNNPDVQMGYYLNDDSQPYSSQNMIGTQSSK
IDPNAEPNVVSLLLTKQWYIRPGSQGGLGDIPFSSLGISAGTGLLSSQISQFVEKATG
FESFNVNVGVDEEGSLSGLEFSFAFLVPLTEGKVRFIGTGSSPDIGKTALFNYYGNSQ
RLEYRISPKLFLEAYRSYGLFGNDVTTTNLLEPKETYGLSLSYRERFYSWEQFWDRIF
"
sig_peptide complement(387970..388068)
/locus_tag="Cphamn1_0367"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.811) with cleavage site probability 0.200 at
residue 33"
misc_feature complement(383620..384963)
/locus_tag="Cphamn1_0367"
/note="Family of unknown function (DUF490); Region:
DUF490; pfam04357"
/db_xref="CDD:218042"
gene complement(388875..389363)
/locus_tag="Cphamn1_0368"
/db_xref="GeneID:6374030"
CDS complement(388875..389363)
/locus_tag="Cphamn1_0368"
/note="TIGRFAM: cytidyltransferase-related domain protein;
rfaE bifunctional protein;
PFAM: cytidylyltransferase;
KEGG: pvi:Cvib_1565 RfaE bifunctional protein"
/codon_start=1
/transl_table=11
/product="rfaE bifunctional protein"
/protein_id="YP_001958816.1"
/db_xref="GI:189499346"
/db_xref="InterPro:IPR004820"
/db_xref="InterPro:IPR004821"
/db_xref="InterPro:IPR011914"
/db_xref="GeneID:6374030"
/translation="MPSERKLLSQEAARDLVEKWKRQGKKTVFTNGCFDILHAGHVRY
LEKAKAAGDTLIVGLNSDTSVERLKGKKRPVVTVAERCAVLSGLEAVDAVVIFEEDTP
EEIIAKLLPDILVKGADWPLDKIVGAKTVLDHGGEVKTIEFLEGLSTSSIIERIIAVY
CR"
misc_feature complement(388896..389318)
/locus_tag="Cphamn1_0368"
/note="rfaE bifunctional protein, domain II; Region:
rfaE_dom_II; TIGR02199"
/db_xref="CDD:131254"
misc_feature complement(388899..389279)
/locus_tag="Cphamn1_0368"
/note="Cytidylyltransferase; Region: CTP_transf_2;
pfam01467"
/db_xref="CDD:216517"
misc_feature complement(order(388911..388922,389241..389252))
/locus_tag="Cphamn1_0368"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(388917..388919,389241..389243,
389250..389252))
/locus_tag="Cphamn1_0368"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(389241..389252)
/locus_tag="Cphamn1_0368"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(388911..388922)
/locus_tag="Cphamn1_0368"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene 389634..390542
/locus_tag="Cphamn1_0369"
/db_xref="GeneID:6374031"
CDS 389634..390542
/locus_tag="Cphamn1_0369"
/note="PFAM: lipid A biosynthesis acyltransferase;
KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis acyltransferase"
/protein_id="YP_001958817.1"
/db_xref="GI:189499347"
/db_xref="InterPro:IPR004960"
/db_xref="GeneID:6374031"
/translation="MNRWNRWFKSFRHYLEYLLFMLCMALSKALGLKQCESVANRIGD
FFYDGLKVRRSIVERNLKGTFTDKSPEDIQTLAREIYRRQALHVIEVLRLPLIKSSKD
ASELLDIDGAEFLEKTKHAGKGGVIVSAHYGNWELLGLCTGLMVTPMNIVVKHLGNPH
IDRWITATRTRHGNSVIYQERALRQGVQILSEGGILTVLGDQTDPTGSFKTDFLGRRS
AVFLGPAFFALKARVPLFLGMCRRQENSRYIVEYQEIGTSDFSFCREDIEELTRRYTK
AIGEYIYRFPEEWFWLHNRWKIPDQE"
misc_feature 389946..390524
/locus_tag="Cphamn1_0369"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature order(390024..390026,390033..390035,390039..390041,
390090..390101,390237..390239,390240..390242)
/locus_tag="Cphamn1_0369"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene 390748..391752
/locus_tag="Cphamn1_0370"
/db_xref="GeneID:6374032"
CDS 390748..391752
/locus_tag="Cphamn1_0370"
/note="PFAM: lipopolysaccharide biosynthesis protein;
KEGG: sbm:Shew185_2902 lipopolysaccharide biosynthesis
protein"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide biosynthesis protein"
/protein_id="YP_001958818.1"
/db_xref="GI:189499348"
/db_xref="InterPro:IPR003856"
/db_xref="GeneID:6374032"
/translation="MCLSLTYKKMKNQNMRESSKSGRDSSQPVQGEKGVETSLDDIRA
VIVSNRWIVVGVTLFVTLSAALYALFAQPVYLTGALVRFDGKEGDRALFMLHSQTFLE
DIIRKEELLPLLFSDQWDSVHHSWASGKGEIPDPEKGAVVLAEKLIIKKRKDLFNLLF
IGMEHPDPYAAADLINRVLIGLNEYVRKEALAKALLLQAYADRQLYIHDSTLADRFAS
LGEADAVRLSGKNGDRKAASEVSGFLRSQLILSSSLEARARLMAKKQESDDVIMRADI
HADEFALKIYDMATAYEKNAKPGKSAVIVLGFIFGMFSGLCIAFVRGLKEGSSQGDFS
"
misc_feature 390853..>391020
/locus_tag="Cphamn1_0370"
/note="Chain length determinant protein; Region: Wzz;
cl15801"
/db_xref="CDD:247074"
misc_feature <391600..391713
/locus_tag="Cphamn1_0370"
/note="G-rich domain on putative tyrosine kinase; Region:
GNVR; pfam13807"
/db_xref="CDD:222392"
gene 391883..393697
/locus_tag="Cphamn1_0371"
/db_xref="GeneID:6374033"
CDS 391883..393697
/locus_tag="Cphamn1_0371"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase; polysaccharide
biosynthesis protein CapD; dTDP-4-dehydrorhamnose
reductase;
KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein
CapD"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein CapD"
/protein_id="YP_001958819.1"
/db_xref="GI:189499349"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR005913"
/db_xref="GeneID:6374033"
/translation="MLQKTMLSLPLRVKQTLAVMQDSLAVVFSVWLAYSLRFEVWHVP
QKAQWLVYGIALAISLPVFYGTSLYKSVFRFSEAMAFKQITKAAALYAVLFFFTLVLF
KIDGVPRSIGITQPIMLFLLLLASRGAARFFLNTRLQLGHCSTADKRLLIYGVGSAGI
QLASAIEQTTRHLLIGFIDDDPKLHGRMVKGLKVFSFGQVARLVEQATVTDILLAIPS
ASRSRRNQILQALQPFPVHVQTLPSLEDLTDGNISVRDVKEIEIEDLLGRDPVSSGPS
LFRRNITGKTVVVTGAGGSIGRELCRQILIGCADKLIMIDHAEFNLHDAYLELEGYRE
RKQQDTEIVPLLCNVAENHRFSAICSSYHPHTIYHAAAYKHVPMVERNPVEGVRNNVF
GTLRSALAAQEYGVESFILVSTDKAVRPANFMGASKRLCEIILQALSAEENGSGTCFS
MVRFGNVLDSSGSVVPLFRQQIKDGGPVTVTHPEITRYFMTIPEAVQLVIQSGAMSLG
GEVFVLDMGEPVKIIDLAKRMIGLSGLTVLDRNNRKGDIPIEVIGLRPGEKLYEELLI
SGDPQPTDHPRIFKAHEEFIAWPALQDELSEMEQVLNT"
misc_feature 391937..393685
/locus_tag="Cphamn1_0371"
/note="Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG1086"
/db_xref="CDD:224011"
misc_feature 392336..>392593
/locus_tag="Cphamn1_0371"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; Region: LbetaH;
cl00160"
/db_xref="CDD:193687"
misc_feature 392765..393625
/locus_tag="Cphamn1_0371"
/note="UDP-Glcnac (UDP-linked N-acetylglucosamine)
inverting 4,6-dehydratase, extended (e) SDRs; Region:
UDP_invert_4-6DH_SDR_e; cd05237"
/db_xref="CDD:187548"
misc_feature order(392765..392770,392828..392833,392921..392929,
392990..392998,393002..393004,393047..393049,
393116..393118,393164..393166,393242..393253,
393260..393265)
/locus_tag="Cphamn1_0371"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187548"
misc_feature order(392831..392833,392837..392839,392849..392851,
392861..392863,392915..392926,392933..392935,
392942..392944,392996..393007,393014..393016,
393026..393028,393035..393037,393044..393046,
393263..393268,393281..393283)
/locus_tag="Cphamn1_0371"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(393002..393004,393122..393130,393152..393154,
393245..393250,393266..393274,393281..393286,
393317..393325,393335..393337,393341..393343,
393446..393448,393545..393547,393554..393556)
/locus_tag="Cphamn1_0371"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187548"
misc_feature order(393050..393052,393122..393124,393152..393154,
393164..393166)
/locus_tag="Cphamn1_0371"
/note="active site"
/db_xref="CDD:187548"
gene complement(393927..395324)
/locus_tag="Cphamn1_0372"
/db_xref="GeneID:6374034"
CDS complement(393927..395324)
/locus_tag="Cphamn1_0372"
/note="KEGG: plt:Plut_1857 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958820.1"
/db_xref="GI:189499350"
/db_xref="GeneID:6374034"
/translation="MAKDKTIKGKKEQQICAILPSDDQLTGRAGLSVFALYLRNIGLF
PIIDRLFGTVRKNGKGLAVTEMFVQILSFFMDGTSRHLNWFDHLAADDAYAGLLGTGR
LASSHAVKRFIGAISFCRIYLFRRLLQDVFLWRLKHTRPEVIMLGIDTTVLDNDDAEK
RHGVQPTYKKVKGFQPLQMNWGRYVVDAVFRGGKKHSNHGNTVNEMLVHMVRKIRNAY
REEVPIIVRMDAGFFDDEVFKTCEQLQIGYLCGGKQYSNVLDEVADAVDWQSFKKVET
DSKSWMYTEFMSRQKKWKKERRTIFSTLWEEDGQYLLQGICRDSVIITNMGMGEKIDE
QLAKIGREDLLDAGKLLGLYHERGTDELTNRALKTFGHEQLPFKRFTANSAWYYLMVL
GNNLFEAFKEDVTEAVIPVSAYADTFRRRFIDTAGKLVRHAGKLVMKVNKVDYVRLKF
DQLYEKCRVGLPQLE"
misc_feature complement(394155..>395018)
/locus_tag="Cphamn1_0372"
/note="Transposase DDE domain group 1; Region:
DDE_Tnp_1_4; pfam13701"
/db_xref="CDD:222326"
gene 395590..397374
/locus_tag="Cphamn1_0373"
/db_xref="GeneID:6374035"
CDS 395590..397374
/locus_tag="Cphamn1_0373"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: plt:Plut_1383 ATPase"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001958821.1"
/db_xref="GI:189499351"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:6374035"
/translation="MSEHSLIHKIWRLLNPVQKKSVIFLFVLMLIGMVLETLGVGLVV
PALALFTQKDIVSQYPRLRQVMDLFGDPDQQTLVVWGLLFLLGVYTVKGLFLAFLAWR
QNQFVFRLQADVSQRLFTTYLSKPYSFHLQRNSAQLIRNATSEVYLFANKLMVSVMHF
FKESLVLLGLCILLFVIEPVGATVVVGLFGVFGLGFYRFTRRYIIRWGKVRQQHEGMR
IQHLQQGLGGVKDVKLLCRESDFLRQYGFHNTNVARVGQMEATMQQLPKLWVEFIAVG
TFVMLVLTMLARGGSLDAIIPKLGLFAVAAFRLMPSVNRILTAVQSIKFSQPVLDMLG
AELHSVVPQELFAKSEKQDFHTEVKLDQVSYSYPATHLPALDNVSLVVKKGETVGFIG
SSGAGKSTIVDVLLGLLPPSDGKILVDGSDILQNLRGWQRQIGYVPQSIFLTDDSLRR
NVAFGIPGDQISNDAVLKALRAAQLETFVESLPDGLDTMVGERGIRLSGGQRQRIGIA
RALYHDPAILVLDEATSALDTETEVDVMQAVNALHGDKTIVIVAHRLSTVEGCDRLYR
LENGKIVDEGEAEKVLQNLRSRQGASVQ"
misc_feature 395617..397341
/locus_tag="Cphamn1_0373"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature 396661..397335
/locus_tag="Cphamn1_0373"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 396763..396786
/locus_tag="Cphamn1_0373"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(396772..396777,396781..396789,396904..396906,
397150..397155,397246..397248)
/locus_tag="Cphamn1_0373"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 396895..396906
/locus_tag="Cphamn1_0373"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 397078..397107
/locus_tag="Cphamn1_0373"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 397138..397155
/locus_tag="Cphamn1_0373"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 397162..397173
/locus_tag="Cphamn1_0373"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 397234..397254
/locus_tag="Cphamn1_0373"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 397408..398037
/locus_tag="Cphamn1_0374"
/db_xref="GeneID:6374036"
CDS 397408..398037
/locus_tag="Cphamn1_0374"
/note="KEGG: ter:Tery_1487 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958822.1"
/db_xref="GI:189499352"
/db_xref="GeneID:6374036"
/translation="MRVIVLTTGRSGSTTFARACRHIGNFTSGHELNKAKLAADRVII
PDNHIESDNRLTWLLGRLEKCYGDDACYVWLKRSEGEVCDSYARRWGAKDLIMEGYFH
AILQYPEYSEVKRSLIAADYVSTVHANIELFLRDKNRKMVFHLHTAHADFERFWYWIG
ARGDLSKALSEWDVVHNASLNGSRYSIVQRGVRKVGRIFRKLPVFLKTA"
gene 398088..399239
/locus_tag="Cphamn1_0375"
/db_xref="GeneID:6374037"
CDS 398088..399239
/locus_tag="Cphamn1_0375"
/note="PFAM: glycosyl transferase group 1;
KEGG: gvi:gll2465 probable glycosyltransferase"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001958823.1"
/db_xref="GI:189499353"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:6374037"
/translation="MIPMHILQYVSLFSKTSETFVYDLICRMEDKGIRSTILTHKRVN
ADQRPFPRCHVAAGSRYSPGRALQKIYNLHRIEKASRCAGVIRALKPDIIHAHFGDSG
ARMISLLNRLDMAMPLVVSFHGRDVNVLPKYDRLYKKIIVQASQNENVVFVTPSDFLK
SKLLALGVNEEKIYRIYNACNPAFCDTSFVRSYASGSRLKVLSVGRYEEVKGYEYLLQ
ASDLLRKKGYAVQVDIIGFGSMEGALRRLIKQKELDGIVSLKGRVSHKAIPDIMKGYD
LYVQPSVVTDEGEEENFGVATVEALCNGLPCLVSKIGGLVEVVDDGISGMFFEEKKPE
DICEKIIHIMENDFLIAQYSQNAKLIASKKFNAESIGDEWVDVYSGLLS"
misc_feature 398088..399236
/locus_tag="Cphamn1_0375"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature 398100..399206
/locus_tag="Cphamn1_0375"
/note="This is a family of GT1 glycosyltransferases found
specifically in certain bacteria. amsK in Erwinia
amylovora, has been reported to be involved in the
biosynthesis of amylovoran, a exopolysaccharide acting as
a virulence factor; Region: GT1_amsK_like; cd03799"
/db_xref="CDD:99972"
misc_feature order(398181..398183,398697..398705,398889..398891,
398973..398975)
/locus_tag="Cphamn1_0375"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99972"
gene 399302..399661
/locus_tag="Cphamn1_0376"
/db_xref="GeneID:6374038"
CDS 399302..399661
/locus_tag="Cphamn1_0376"
/note="KEGG: pdi:BDI_2217 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958824.1"
/db_xref="GI:189499354"
/db_xref="GeneID:6374038"
/translation="MFRLMSFRNGVYVFNYHQVSDVFIPEFYSRWTYTDRSFFEKQLF
FIRKHFQIISVKDALCRQHSGDIDKPYACITFDDGCSSLKAHVLPVLIRSAIPATFFI
NTAYLDNDKASWFTVYN"
misc_feature 399512..>399643
/locus_tag="Cphamn1_0376"
/note="Putative catalytic NodB homology domain of PgaB,
IcaB, and similar proteins which consist of a deformed
(beta/alpha)8 barrel fold with 5- or 6-strands; Region:
CE4_NodB_like_5s_6s; cd10918"
/db_xref="CDD:213023"
gene complement(399861..400850)
/locus_tag="Cphamn1_0377"
/db_xref="GeneID:6374039"
CDS complement(399861..400850)
/locus_tag="Cphamn1_0377"
/note="PFAM: transposase IS4 family protein;
KEGG: pth:PTH_2026 transposase and inactivated
derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_001958825.1"
/db_xref="GI:189499355"
/db_xref="InterPro:IPR002559"
/db_xref="GeneID:6374039"
/translation="MARGDSFVVETNVHFPADTSQLFDAIRKVIELTAKLSILQGLSQ
WRQYRHVILGLKRDLRVVQKLKHSTSGDAEKQEKANKAIKQAYLNYCGNVEYQLLRAK
ITVDESKENDSLLLSKISSYITHAEIQLDQIHRRIFMNEKIPHGEKVFSVFEPHTEWI
SKGKIGVPVELGLNVCIIQDQYQFILHHHVMEKVTDSEIAVSIVKETKSRFTNLRAIS
FDKGFHSPDNQKALKELVAVVVLPKKGNRSASDKARETAPEFKRLRKKHSAVESGIHA
LEVHGLDICPDHGIDGFKRYVSLSVLAYNIHRLGALLQKQDMRRYRRRLRQAA"
gene complement(400850..401348)
/locus_tag="Cphamn1_0378"
/pseudo
/db_xref="GeneID:6374040"
gene 401520..402059
/locus_tag="Cphamn1_0379"
/db_xref="GeneID:6374041"
CDS 401520..402059
/locus_tag="Cphamn1_0379"
/note="KEGG: pdi:BDI_2217 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958826.1"
/db_xref="GI:189499356"
/db_xref="GeneID:6374041"
/translation="MAFLSDTNYLVHSEYKIHIPLSLLEEVKNLRKTRDRQFYERVRR
EVESLYECIPEKERHFYVTRAFLSSLDEKLFHIGLHGHEHQRYSMMSETWRKHDLQKN
IQELREYSNYVHVFAVPFGRPYDWDRATVKICYEHDLDIVFADGGFNQGGEVGLKRMP
ADSRSVMRLMLRSFCFYGR"
misc_feature <401727..402005
/locus_tag="Cphamn1_0379"
/note="Putative catalytic NodB homology domain of PgaB,
IcaB, and similar proteins which consist of a deformed
(beta/alpha)8 barrel fold with 5- or 6-strands; Region:
CE4_NodB_like_5s_6s; cd10918"
/db_xref="CDD:213023"
misc_feature order(401757..401759,401769..401771,401874..401882)
/locus_tag="Cphamn1_0379"
/note="putative active site [active]"
/db_xref="CDD:213023"
gene 402174..403070
/locus_tag="Cphamn1_0380"
/db_xref="GeneID:6374042"
CDS 402174..403070
/locus_tag="Cphamn1_0380"
/note="PFAM: glycosyl transferase family 2;
KEGG: sgl:SG0982 hypothetical protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_001958827.1"
/db_xref="GI:189499357"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:6374042"
/translation="MDFSVVIPVYNSSDFLFPALDSIAASSANREYEVIVVDDCSDDI
GKTRQIVDSFSGVSLVQKERKTNAADSRNIGMALSKADYVFFLDSDDRVLPGYIDRRI
RMLQETGAGLLFGDFLSSAGTRKIRAGIPSYAGGDTRDYLFVSGGDCRSSTISVNRKK
LAGCTFDGSLEKHQDWGFLLRAYDAGTVIHFDPEPGVLMQVYHADRMSRSSNVDASRF
FMRKYLKERRHINGFSRKHWKSVLAGRDQDAIRFFFGIYRPEKIFLKDAFRFYLYRIL
STVPLVYPASCFITFFRKIKWQ"
misc_feature 402174..403001
/locus_tag="Cphamn1_0380"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:223539"
misc_feature 402186..>402518
/locus_tag="Cphamn1_0380"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cd00761"
/db_xref="CDD:132997"
misc_feature order(402195..402197,402201..402203,402282..402284,
402435..402437,402441..402443)
/locus_tag="Cphamn1_0380"
/note="active site"
/db_xref="CDD:132997"
gene 403122..404225
/locus_tag="Cphamn1_0381"
/db_xref="GeneID:6374043"
CDS 403122..404225
/locus_tag="Cphamn1_0381"
/note="PFAM: glycosyl transferase group 1;
KEGG: lsl:LSL_0988 glycosyltransferase"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001958828.1"
/db_xref="GI:189499358"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:6374043"
/translation="MSVGALKKRVIQVITSPSGGGAEVLVRELGSLLGADNIISEVIY
FKKPDDVRALELSGDEFFLHNSLRSPSAIFKLRKIFRERLRRGERLIVHAHLTWPFYY
VALASLFLSLDIVYTEHNTSNRRRGFRVLRVLDRFFYSRYRKVICISEGVKTSLVRWL
GKDDNGRLVTIGNGSRMYEYCDRKVVRGLRKKPELVSVGSLTKQKGFSTAIAAIALLR
DEIGCYVIVGEGPERSHLMALVHKNKLEGKVVLAGWRSDVEDFYRNADIQLIPSHWEG
FGLVAVEGMSTGLPVIASDVEGLRDVVSSENPSVELVTDFKNPRSWSAALKNVIQRFS
ASPDDISMAARRQAEKFSMERMVDRYRQMYNSL"
misc_feature 403140..404222
/locus_tag="Cphamn1_0381"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature 403146..404201
/locus_tag="Cphamn1_0381"
/note="This family is most closely related to the GT1
family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core; Region: GT1_WabH_like; cd03811"
/db_xref="CDD:99982"
misc_feature order(403182..403184,403713..403721,403893..403895,
403959..403961)
/locus_tag="Cphamn1_0381"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99982"
gene 404393..405772
/locus_tag="Cphamn1_0382"
/db_xref="GeneID:6374044"
CDS 404393..405772
/locus_tag="Cphamn1_0382"
/note="KEGG: esi:Exig_2572 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958829.1"
/db_xref="GI:189499359"
/db_xref="GeneID:6374044"
/translation="MNEVIFSYRDSGLESLSPATFAGTLILVISLVLPVCYSVFRKDT
GSLVLLWSLLFVYHAVSLINSFYTTTYGAGVDARAFYNHAVDIAFTGDFQFHFGAGSS
IFENYLGALFSFFGPSVFLASELSVLAFTFSAVYLVKMAAITGLYDYRRWILFFFGSL
PTMWLLSAVPMREAYQYLFFILTVYTAICMRQKKNVLFLPLILIFAVCMGLFHKGLVL
FIVPLVLVLFLYSTGSALSGERNRRDAVLYRRFLFAAFSVVVIFAVIFVSQYPQFLND
TPKAVIKGEAFDYVEQYRVPSKESRATYGIDFRHDNPAALLGSVAKMQLYYFLYPFPW
KIANFQDLYALLENSWRFFLILSSFFLVWKHRKTGDATYAMLLLLYFVNAFLWGLGTI
NYGTAIRHHLVPFWIIVLLGTPGIIEGARRLNALYASRLLRKSRGASAPENHARQSGI
TEHMSKGES"
gene 405769..406890
/locus_tag="Cphamn1_0383"
/db_xref="GeneID:6374045"
CDS 405769..406890
/locus_tag="Cphamn1_0383"
/note="PFAM: glycosyl transferase group 1;
KEGG: swd:Swoo_1663 glycosyl transferase group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_001958830.1"
/db_xref="GI:189499360"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:6374045"
/translation="MSHIVLVGAHPGSLTNFRGDFIRALKSAGHRITAMSASASDEQI
ARLAYLGADFRPYPVERNGLNPLRDMETLISLIGIFKEVKPDVIIAYTIKPVIWSGIA
LRFLPSRVSYFAMITGLGYAFHTKGFSGFMLSKSVSLLYSIALRRARGVIFQNVESRG
LFVERHIVPGTCSHIVSGSGVNLEQFAHQPMPDRKYPVFLLVARLIREKGIREYAEAA
RIVKQNYPKAVFRLLGPSDPSPDGISMQEIEQWQREGSVEYLGRTDDVRPFLADCNIF
VLPSYYGEGLSRSILEAMASGRPILTTDNPGCYETVVIGENGFVVPGKDSAALAERMV
WFIENPERCLKMGARSRQIAAERYDVHRINRQLMAITEL"
misc_feature 405778..406875
/locus_tag="Cphamn1_0383"
/note="This family is most closely related to the GT1
family of glycosyltransferases. cap1E in Streptococcus
pneumoniae is required for the synthesis of type 1
capsular polysaccharides; Region: GT1_cap1E_like; cd03808"
/db_xref="CDD:99980"
misc_feature 405796..406878
/locus_tag="Cphamn1_0383"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
misc_feature order(405853..405855,406372..406380,406564..406566,
406633..406635)
/locus_tag="Cphamn1_0383"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99980"
gene 406890..407498
/locus_tag="Cphamn1_0384"
/db_xref="GeneID:6374046"
CDS 406890..407498
/locus_tag="Cphamn1_0384"
/note="PFAM: sugar transferase;
KEGG: gur:Gura_1698 undecaprenyl-phosphate galactose
phosphotransferase"
/codon_start=1
/transl_table=11
/product="sugar transferase"
/protein_id="YP_001958831.1"
/db_xref="GI:189499361"
/db_xref="InterPro:IPR003362"
/db_xref="GeneID:6374046"
/translation="MIKRVFDCLISLFALLILFPVMLFVALVVRITLGSPVLFVQERP
GLLGKPFRLYKFRTMTDERGADGRLLSNRERLTGTGRFLRSTSLDELPGLWNVFVGDM
SLVGPRPLLTEYLDHYSEFEARRHDVKPGITGWAQVNGRNAISWEEKFRYDVWYVDNR
SFFLDLKILWMTVKKVFFREGISHEGTVTMPRFKGSDTSKKS"
sig_peptide 406890..406967
/locus_tag="Cphamn1_0384"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.978) with cleavage site probability 0.771 at
residue 26"
misc_feature 406896..407426
/locus_tag="Cphamn1_0384"
/note="Bacterial sugar transferase; Region: Bac_transf;
pfam02397"
/db_xref="CDD:217016"
gene complement(407505..409538)
/locus_tag="Cphamn1_0385"
/db_xref="GeneID:6374047"
CDS complement(407505..409538)
/locus_tag="Cphamn1_0385"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase;
dTDP-4-dehydrorhamnose reductase; Male sterility domain;
KEGG: sme:SMb21227 carbamoyl phosphate synthase large
subunit"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_001958832.1"
/db_xref="GI:189499362"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:6374047"
/translation="MITIGITGAGGGVGQSILHALSQSTLELKIVSMDASPRSIGMFW
SDDSWLLPKVSQEESYIKSLLDICNHENLDIIIPGLDIELPVLSRHRDTFLQHGCKVI
VGSKEAVSICRDKFRQSVFCREKNLPFVKTCSLEDARKMPDSFDYPVIVKPRGGSASA
GASLVFNPDQLYQIPDDQPMIVQDYLPPNDSASRSFSGKTSTGNLDQSNEISVQYYIN
RSGNVSGSFASVNLLKNGIPVEISPEPDSPAIAAGLPIVKALAQEGLTGPVNLQGRQK
DGDILFFEINARFTGITGLRASFGYKEVEAAICDLLFDSDKDVEALLGYLPGYFGLRY
VADSIVPVERMNRLCLPNHGKTPSRGSSSAPSSENILVTGASGYFGAAIIEQLLDVQK
GHTITALARTDHAETGLVNTFGNHNNFACVRGEFPGSIPDLQGMDTVIHAASLRPGSD
PSPLFLTNTDGTRALLEAMHDAGVGKLIFISSQSVYGTARTPLWKEEMPAKPETPYAL
SKWIGELLSLSENYSIPQVIILRVARIYGLGHFVRWDELPHKFALNAAKKRALPLFGS
KNRIDLLHVNDAARAVRASCCTSFPETSKIILNIGSGTPVSISDFASICQAASRNCGL
PAPPIEQNQNDEASPLYWGMDIRKAKESLGWVPRHSLQSGMEELIRYQLDNAE"
misc_feature complement(408510..409493)
/locus_tag="Cphamn1_0385"
/note="carbamoyl phosphate synthase-like protein;
Provisional; Region: PRK12767"
/db_xref="CDD:237195"
misc_feature complement(408666..409205)
/locus_tag="Cphamn1_0385"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:222206"
misc_feature complement(407508..408434)
/locus_tag="Cphamn1_0385"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:223528"
misc_feature complement(407736..408431)
/locus_tag="Cphamn1_0385"
/note="extended (e) SDRs; Region: SDR_e; cd08946"
/db_xref="CDD:212494"
misc_feature complement(order(407934..407945,408009..408011,
408021..408023,408093..408101,408168..408170,
408207..408215,408333..408341,408402..408413,
408417..408419))
/locus_tag="Cphamn1_0385"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212494"
misc_feature complement(order(408009..408011,408021..408023,
408093..408095,408165..408167))
/locus_tag="Cphamn1_0385"
/note="active site"
/db_xref="CDD:212494"
misc_feature complement(order(407850..407852,407886..407888,
407937..407939,408021..408023,408093..408095))
/locus_tag="Cphamn1_0385"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:212494"
gene 409799..410962
/locus_tag="Cphamn1_0386"
/db_xref="GeneID:6374048"
CDS 409799..410962
/locus_tag="Cphamn1_0386"
/EC_number="2.6.1.50"
/note="PFAM: DegT/DnrJ/EryC1/StrS aminotransferase;
aromatic amino acid beta-eliminating lyase/threonine
aldolase;
KEGG: reu:Reut_B5377 DegT/DnrJ/EryC1/StrS
aminotransferase:aromatic amino acid beta-eliminating
lyase/threonine aldolase"
/codon_start=1
/transl_table=11
/product="Glutamine--scyllo-inositol transaminase"
/protein_id="YP_001958833.1"
/db_xref="GI:189499363"
/db_xref="InterPro:IPR000653"
/db_xref="InterPro:IPR001597"
/db_xref="GeneID:6374048"
/translation="MMSFPYWPSYSREEAEVASRVLLSNKVNYWTGNEGRAFEKEFAG
YCGCRYAVALCNGTAALELALRALGIGMGDEVIVPCYTFIATASAVVACGAVPVMADV
DRDSLTITAETVAPRITSRTKAVIPVHLMGYPCDMDPILMLSEKHGLKVVEDCAQAHG
ARYKGRSVGTIGDIGAWSFCQDKIMTTAGEGGMVTTDNEVYREKMWSYKDHGKSWKAV
YGKKHSPGFRWVHESFGTNWRMTEIQAAIGRIQLSRMPLWQAQRKRNASILSDGFRSI
PGIEVQEQNPDIVHAYYKYATFLETDILRFSGGREAVMEAVNASGVPCFSGVCPEIYR
EKAFEQANLVPPERMPAAHEMGKRSLVFQVHPALQEQHMYRTVEVVRQVLSQL"
misc_feature 409799..410956
/locus_tag="Cphamn1_0386"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:223476"
misc_feature 409835..410941
/locus_tag="Cphamn1_0386"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(409967..409972,410258..410260,410267..410269,
410330..410332,410342..410347,410780..410782)
/locus_tag="Cphamn1_0386"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(409967..409972,410042..410044,410258..410260,
410267..410269,410330..410332,410345..410347)
/locus_tag="Cphamn1_0386"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 410345..410347
/locus_tag="Cphamn1_0386"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene 411054..412958
/locus_tag="Cphamn1_0387"
/db_xref="GeneID:6374049"
CDS 411054..412958
/locus_tag="Cphamn1_0387"
/note="PFAM: ABC transporter transmembrane region; ABC
transporter related;
SMART: AAA ATPase;
KEGG: pvi:Cvib_0672 ABC transporter related"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001958834.1"
/db_xref="GI:189499364"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:6374049"
/translation="MKIIKGLLRYLAPFKGKVLLVVFFSLLTSLFGAVSIYSILPLLN
EIFSADKTISAPENPSVAPGTELVMTGKGESRSVSGTLINTDDVQKKVSGLYRKYFYA
DTKRKTLLNVCLFLIAAFAVKNLFFYINRQIIYRIQTKVTKELRDDVFHSIIEMHLDY
FNKSRVGGLMNHVYNDVQNVQNSISLAFINFIQNPFSIFVYIGVLLVLSWKLTIFAFS
ISVLIFIVIRLIGKKIKSLSMVFRARMGDMNSVLNEKFNGIKVIKSSAFEDREVERFK
SFTNEFRRLDLKIYRLHNIVSPLNETLLVAAVAMVLWFGGLQVFEGMMTANELIVFAF
SLFSAMGPMKMLGEANSKIQEGMASAERLFEVIEAEPLVKNGTEPIDGFADSIRFEDV
CFRYNASPDAARVLDHVSFEIRKGETLALVGQSGSGKSTVVDLLLRFYDVDSGRIVID
GVDIREYDFKQLRSIVGVVSQEVILFNDTIEQNIAYGLGDEAGHQEVERASRLANAHD
FIEAKPQKYETVIGDRGVQLSGGQRQRLAIARAMVNNPDLLIFDEATSALDNESEKVV
QEAINHALQDRTALVVAHRLSTIKTADRILVLKKGNVVEEGTHEELIRKGGLYKKYYD
IQFSTSPSEA"
sig_peptide 411054..411152
/locus_tag="Cphamn1_0387"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.944) with cleavage site probability 0.819 at
residue 33"
misc_feature 411360..412082
/locus_tag="Cphamn1_0387"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature 411378..412934
/locus_tag="Cphamn1_0387"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature 412212..412922
/locus_tag="Cphamn1_0387"
/note="ATP-binding cassette domain of the bacterial lipid
flippase and related proteins, subfamily C; Region:
ABCC_MsbA; cd03251"
/db_xref="CDD:213218"
misc_feature 412320..412343
/locus_tag="Cphamn1_0387"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213218"
misc_feature order(412329..412334,412338..412346,412464..412466,
412707..412712,412803..412805)
/locus_tag="Cphamn1_0387"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213218"
misc_feature 412455..412466
/locus_tag="Cphamn1_0387"
/note="Q-loop/lid; other site"
/db_xref="CDD:213218"
misc_feature 412635..412664
/locus_tag="Cphamn1_0387"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213218"
misc_feature 412695..412712
/locus_tag="Cphamn1_0387"
/note="Walker B; other site"
/db_xref="CDD:213218"
misc_feature 412719..412730
/locus_tag="Cphamn1_0387"
/note="D-loop; other site"
/db_xref="CDD:213218"
misc_feature 412791..412811
/locus_tag="Cphamn1_0387"
/note="H-loop/switch region; other site"
/db_xref="CDD:213218"
gene complement(413006..413818)
/locus_tag="Cphamn1_0388"
/db_xref="GeneID:6374050"
CDS complement(413006..413818)
/locus_tag="Cphamn1_0388"
/note="PFAM: glycosyl transferase family 2;
KEGG: plt:Plut_1798 hypothetical protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_001958835.1"
/db_xref="GI:189499365"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:6374050"
/translation="MKQTKPLSCSLIITTYNWPEALELAARSALRQSLAPDEIIIADD
GSDTDTKKFVRGLSENASAPIIHSWQEDKGFRAASSRNKAIALAKSQYIVLIDGDMIL
HRDFIQDHMRSAKKNHFIQGSRVLLNEHTSIKTLTTRKITFGFFDKGLQNRINAVHNN
AIASFFRSTHNTFQGIKTCNMSFFREDCIRINGFNEDFIGWGREDSEFAARLFNSDVH
RISLKFGAIAYHLWHRENPRDFLPANDRLLDRTITGRLKRCKNGIDKYLTDK"
misc_feature complement(413123..413788)
/locus_tag="Cphamn1_0388"
/note="N-terminal domain of Chondroitin polymerase
functions as a GalNAc transferase; Region:
GT2_Chondriotin_Pol_N; cd06420"
/db_xref="CDD:133042"
misc_feature complement(order(413129..413131,413204..413209,
413282..413284,413522..413524,413528..413530,
413576..413578,413588..413590,413594..413596,
413687..413689,413765..413767,413771..413779))
/locus_tag="Cphamn1_0388"
/note="Substrate binding site; other site"
/db_xref="CDD:133042"
misc_feature complement(order(413129..413131,413522..413524))
/locus_tag="Cphamn1_0388"
/note="metal-binding site"
/db_xref="CDD:133042"
gene 413958..415357
/locus_tag="Cphamn1_0389"
/pseudo
/db_xref="GeneID:6374051"
gene complement(415573..416298)
/locus_tag="Cphamn1_0390"
/db_xref="GeneID:6374052"
CDS complement(415573..416298)
/locus_tag="Cphamn1_0390"
/note="PFAM: glycosyl transferase family 2;
KEGG: plt:Plut_1799 hypothetical protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_001958836.1"
/db_xref="GI:189499366"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:6374052"
/translation="MAENITVTILTKNSEKHLKECLEALELFDEIVVLDNGSTDDTIR
IAGSFPNVRIFKHEFIGFGPLKVLAARNASHDWVLSIDSDEIVTRELVEEIRALRLEK
KTVYAIRRDNYYNRSKIIGCGWENDWVNRLFNRQEAGFNTKLVHESLELKNEICVKRL
HNPIKHYTFDNASHLIKKMEHYSTLWAEDHKGKKTSSPLKAVSRGMFTFFKSYILQRG
LLSGYSGMVISVSNANGAFYNLN"
misc_feature complement(<415939..416298)
/locus_tag="Cphamn1_0390"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:223539"
misc_feature complement(415612..416289)
/locus_tag="Cphamn1_0390"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature complement(order(416047..416049,416053..416055))
/locus_tag="Cphamn1_0390"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene complement(416277..417356)
/locus_tag="Cphamn1_0391"
/db_xref="GeneID:6374053"
CDS complement(416277..417356)
/locus_tag="Cphamn1_0391"
/note="PFAM: glycosyl transferase family 9;
KEGG: plt:Plut_1800 LPS heptosyltransferase-like"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_001958837.1"
/db_xref="GI:189499367"
/db_xref="InterPro:IPR002201"
/db_xref="GeneID:6374053"
/translation="MNKSKPGKILIIIQRANGDVLLSSPLIDILYEYYDQPKIDLLVN
ENTAAVAKALRNVSHVHIFSYKNSRLKETITTISKIRNKYDLSISLTASDRCILFSIL
SGKTSISATEKKVLKSWWKRILLSHSYFYDPTRHIVINNTASLSLLGIHPKNIKVTIS
HSENAKKSIHEKLKKLNIQEFLLFHPSAQYEYKIYPAASRTKLLCLLNTLNIPIIVTG
GKSELDDAIKQDIPDLDNIHNFIGETTLQEYVALSNAATVYIGSDTLNMHIAASQNKR
IFAIFGPTLLQTWSPWSNELQTSTASDRPVQTYGNITIFQADMPCVACGLAGCDDKHG
KSDCLYHIDPSTIFNEVQKWLKTSP"
misc_feature complement(416283..417335)
/locus_tag="Cphamn1_0391"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(416298..417335)
/locus_tag="Cphamn1_0391"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(416550..416552,416559..416564,
416571..416573,416607..416612,416706..416708,
416802..416807))
/locus_tag="Cphamn1_0391"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(417349..418545)
/locus_tag="Cphamn1_0392"
/db_xref="GeneID:6374054"
CDS complement(417349..418545)
/locus_tag="Cphamn1_0392"
/note="PFAM: O-antigen polymerase;
KEGG: plt:Plut_1804 hypothetical protein"
/codon_start=1
/transl_table=11
/product="O-antigen polymerase"
/protein_id="YP_001958838.1"
/db_xref="GI:189499368"
/db_xref="InterPro:IPR007016"
/db_xref="GeneID:6374054"
/translation="MIDRNIQIEDIQSNLIVFFGFIFPFSVAVGNIVAALITLLWIFR
GNHKENWASLKGNKFVLATLCFVALYFAGLLWTLDIDSGIRTLQKESVLLLIPIFMLF
IQKKHLHRYIFAFLISISCMVLLSFAIYYGIIPPLSGAKQSDPTPFMSHISYNPFLTI
AIYLLLFLILFDDTQSKRNKILFSLVVLIFSINMFITKGRAGQAMFFAMIFITTVQYF
NKQRKKGLLVAAILVPLILSIAYSTSDNFSNRMNAIVGDVQKYQENNKKTSTGLRLVF
AENSFEIIRNNPVFGVGTGDFAHEYEKINNKNTPELRPTENPHNMYVLTTVQLGIIGL
VSLLSLLFFQTQLSTSSKIDFQKKFGLTLPILFGIIMLSDSYLRGHYTTMLYVYFSSF
TYKVYE"
misc_feature complement(417577..417993)
/locus_tag="Cphamn1_0392"
/note="O-Antigen ligase; Region: Wzy_C; pfam04932"
/db_xref="CDD:218334"
gene 418891..419829
/locus_tag="Cphamn1_0393"
/db_xref="GeneID:6374055"
CDS 418891..419829
/locus_tag="Cphamn1_0393"
/note="PFAM: Abortive infection protein;
KEGG: cte:CT0232 hypothetical protein"
/codon_start=1
/transl_table=11
/product="abortive infection protein"
/protein_id="YP_001958839.1"
/db_xref="GI:189499369"
/db_xref="InterPro:IPR003675"
/db_xref="GeneID:6374055"
/translation="MSEISGGRTKKNRIFFHTSAVLLVILVAYPLFGGMMMSSVLQVT
TDGTVDPISWKSRETLSVVRVVQAIGQIVLIGLPVLFLTGFITGDKRLFSKHNFAFLG
IGHRGSMQGVLLAITGVLLLQPFVYALMEATGYLLPHLGDFGKALLENQKQLEHYLIF
LAGADSASEFLLVVLVIAVIPAICEEIFFRGYIQKNYEESLNPFRGIALSGLVFGLFH
LSPANLVPLTVMGWYLGYVYYKTRNLLVPVLVHFCNNFLALSVLQFQRSGQDGAGLIE
SRDVPGSSLVPVVLISLALFVLVLRSFNSRFAVKRA"
sig_peptide 418891..419019
/locus_tag="Cphamn1_0393"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.970) with cleavage site probability 0.612 at
residue 43"
misc_feature 419440..419661
/locus_tag="Cphamn1_0393"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:217080"
gene complement(420019..420168)
/locus_tag="Cphamn1_0394"
/db_xref="GeneID:6374056"
CDS complement(420019..420168)
/locus_tag="Cphamn1_0394"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958840.1"
/db_xref="GI:189499370"
/db_xref="GeneID:6374056"
/translation="MPPNSNEEYGKLFQISALKTNLHLHSDGKTSNNVQEMNLQKNHH
NEHLN"
gene 420215..421048
/locus_tag="Cphamn1_0395"
/db_xref="GeneID:6374057"
CDS 420215..421048
/locus_tag="Cphamn1_0395"
/note="PFAM: phosphatidate cytidylyltransferase;
KEGG: pvi:Cvib_0694 phosphatidate cytidylyltransferase"
/codon_start=1
/transl_table=11
/product="phosphatidate cytidylyltransferase"
/protein_id="YP_001958841.1"
/db_xref="GI:189499371"
/db_xref="InterPro:IPR000374"
/db_xref="GeneID:6374057"
/translation="MAETGMSNIQQRIAVGVAGVPLVIWISWMGGAYFFALMLLCSLL
AINEFYRLLSVKAIPPARSLFLLCSFVLQLNFFFVVVEPWILLLAILMTFLVLEMFRT
EGSRIVNIGSSMTAIFYVNITFGSLMVIREREPSGFAYVLLLFVCIWSADILAYFGGR
LFGGKLFKKKFFERLSPHKTWEGYISGCLGSVLGSAAVALLDLGLPTVFTLVAGLSIG
LFSPLGDLVESMFKRDAGVKDSSSLIPGHGGVLDRFDTIMFMSPLLYLYIYFVEVWTG
L"
misc_feature 420242..421030
/locus_tag="Cphamn1_0395"
/note="CDP-diglyceride synthetase [Lipid metabolism];
Region: CdsA; COG0575"
/db_xref="CDD:223648"
misc_feature 420242..421024
/locus_tag="Cphamn1_0395"
/note="Cytidylyltransferase family; Region: CTP_transf_1;
pfam01148"
/db_xref="CDD:216329"
gene 421151..421621
/locus_tag="Cphamn1_0396"
/db_xref="GeneID:6374058"
CDS 421151..421621
/locus_tag="Cphamn1_0396"
/note="PFAM: phosphoenolpyruvate-dependent sugar
phosphotransferase system EIIA 2;
KEGG: plt:Plut_1787 PTS IIA-like nitrogen-regulatory
protein PtsN"
/codon_start=1
/transl_table=11
/product="PTS transporter subunit IIA-like
nitrogen-regulatory protein PtsN"
/protein_id="YP_001958842.1"
/db_xref="GI:189499372"
/db_xref="InterPro:IPR002178"
/db_xref="GeneID:6374058"
/translation="MKIEGLLSEKYIELNLELTKKSQVIDAMLSIAGLHPGVENRKKL
RHDVLKREKEMSTGIGKQIALPHAKTDAVSAPVLAFATLKNRINFDSIDNEPVGVVFF
LATPEDMLAEHLKLLGRITRLAGRADVREKLMSALVSSEVLELFREEEKDFPQI"
misc_feature 421169..421588
/locus_tag="Cphamn1_0396"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:238129"
misc_feature order(421301..421303,421349..421351)
/locus_tag="Cphamn1_0396"
/note="active site"
/db_xref="CDD:238129"
misc_feature 421349..421351
/locus_tag="Cphamn1_0396"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238129"
gene 421919..423223
/gene="hisS"
/locus_tag="Cphamn1_0397"
/db_xref="GeneID:6374059"
CDS 421919..423223
/gene="hisS"
/locus_tag="Cphamn1_0397"
/EC_number="6.1.1.21"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_001958843.1"
/db_xref="GI:189499373"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR015807"
/db_xref="GeneID:6374059"
/translation="MSEYRAVKGTKDIFPDEITSWKYIEGVIHRVVGLYGFQEIRTPV
FEYTDLFQRSIGSTTDIVGKEMFSFRPEPDGRSVTLRPEMTAGVMRAFLQANLSSASP
VHKLYYIAELFRKERPQAGRQRQFSQFGAEMLGASSPEAVAEVIDMMMQVFTSLGVSG
LRLRINTLGDLDDRVRYRDALRAYLEPHSGLLDAPSRERLEKNPLRILDSKNPDIQSV
IADAPKLHDFLNPSARAEFDQVLLYLDQKSIEYVIDPLLVRGLDYYCHTAFEVVSPEL
GAQDAIGGGGRYDGLARELGSKSDIPAVGFAVGMERLLITMEKQGLLRHIVPSGPRVY
IVLQNEELKTHALSACDLLRRSGIRTEMDLCGRSMKAQMREANRQHADYALFVGKSEV
ESQAYGLKNLRTSEQDFLSIREMIARLASSTKHVEVPDGGPD"
misc_feature 421919..423181
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:234586"
misc_feature 421967..422872
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for...; Region: HisRS-like_core;
cd00773"
/db_xref="CDD:238396"
misc_feature order(421982..421984,422018..422020,422033..422053,
422123..422128,422165..422167,422171..422173,
422186..422191,422198..422203,422288..422293,
422312..422314,422336..422338,422348..422350,
422357..422359,422774..422776,422831..422836)
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238396"
misc_feature 422027..422053
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="motif 1; other site"
/db_xref="CDD:238396"
misc_feature order(422165..422167,422171..422173,422258..422260,
422264..422266,422285..422287,422294..422296,
422300..422302,422312..422314,422693..422695,
422699..422701,422705..422710,422759..422761,
422774..422776,422834..422836,422843..422845,
422852..422854)
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="active site"
/db_xref="CDD:238396"
misc_feature 422255..422269
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="motif 2; other site"
/db_xref="CDD:238396"
misc_feature order(422831..422845,422852..422854)
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="motif 3; other site"
/db_xref="CDD:238396"
misc_feature 422906..423178
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:238436"
misc_feature order(422930..422935,423038..423040,423056..423058,
423080..423082,423110..423112,423116..423118)
/gene="hisS"
/locus_tag="Cphamn1_0397"
/note="anticodon binding site; other site"
/db_xref="CDD:238436"
gene 423292..423561
/locus_tag="Cphamn1_0398"
/db_xref="GeneID:6374060"
CDS 423292..423561
/locus_tag="Cphamn1_0398"
/note="PFAM: glutaredoxin 2;
KEGG: pvi:Cvib_0697 glutaredoxin 2"
/codon_start=1
/transl_table=11
/product="glutaredoxin"
/protein_id="YP_001958844.1"
/db_xref="GI:189499374"
/db_xref="InterPro:IPR008554"
/db_xref="GeneID:6374060"
/translation="MYDSNVVLYTKPGCSLCEKAGRAVERVLADIPFALEVVDITTSS
ELLQRYGLYIPVISIDGVEFSRYHVNESKLRALLNGERTQGTLRG"
misc_feature 423307..423525
/locus_tag="Cphamn1_0398"
/note="Glutaredoxin-like domain (DUF836); Region: DUF836;
pfam05768"
/db_xref="CDD:218740"
gene 423748..423960
/locus_tag="Cphamn1_0399"
/db_xref="GeneID:6374061"
CDS 423748..423960
/locus_tag="Cphamn1_0399"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958845.1"
/db_xref="GI:189499375"
/db_xref="GeneID:6374061"
/translation="MLRFLLVVIVLFLLLRAIMRFFAGRFLRQQWPFGSFNPGSGKAA
SSSGVTEEADFEVIETNVNKNESSTA"
gene 424099..424641
/locus_tag="Cphamn1_0400"
/db_xref="GeneID:6374062"
CDS 424099..424641
/locus_tag="Cphamn1_0400"
/note="PFAM: protein of unknown function DUF150;
KEGG: plt:Plut_1781 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958846.1"
/db_xref="GI:189499376"
/db_xref="InterPro:IPR003728"
/db_xref="GeneID:6374062"
/translation="MNVIKDRLLAFIEDSFEEYSIERSASGEPDVFLVALLVKGTLPS
RRVEVLAETDSGISVTRCMSIARWLRNAFEENEEIRNLVGEDYGLMVSSPGIGEPIQH
ARQYIRHKGHLLRVRYTDAGDAEHEVSGRLVEVEVVETTSPFIVLEPEKVSKGRKRER
LEPVRLELNRIKSAVVEVEF"
misc_feature 424099..424638
/locus_tag="Cphamn1_0400"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:234627"
misc_feature 424189..424635
/locus_tag="Cphamn1_0400"
/note="hypothetical protein; Provisional; Region:
PRK14641"
/db_xref="CDD:173104"
gene 424695..426260
/gene="nusA"
/locus_tag="Cphamn1_0401"
/db_xref="GeneID:6374063"
CDS 424695..426260
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_001958847.1"
/db_xref="GI:189499377"
/db_xref="InterPro:IPR010213"
/db_xref="InterPro:IPR013735"
/db_xref="GeneID:6374063"
/translation="MARKQVKKEKQDRRELIANAFGEIEQSKVFLEKHTESAAVKMDI
ADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKTVVDEVDLPSIEIGLEEVS
RIDESLELGDMYEEGPVNLEDYLTRKSIQIIKQSVQKKVRDMEKQVVYEDCLEKVGEV
VAGEVYQVRQNEVIFSYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKV
KVRQDDGSIVEKEKPDGGMKVIVSRIDDRFLYKLFESEVPEILDGLIVIKGIARVPGE
RAKVAVESTSSRIDPVGASVGYRGKRIQSIVKELNNENIDVINFTDDPQIYIARALQP
AKIDPMTVHADMKTHKARVMLKPEQIKYAIGKNGNNIHLAERLTGYDVDVYRDVIDKS
MEDPNDIDIIEFREEFGDDMIYQLLDSGLDTAKKVLKAEIEDIEAALVGPPSKSEESA
FFTKGRKAPFKPKERTLSEDEKRYWKKIAENIYKTVKEQFNEADLQEIIDEEDEDILS
DGDADVSVDDQNN"
misc_feature 424830..425138
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:219884"
misc_feature 424836..425855
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="transcription termination factor NusA; Region:
NusA; TIGR01953"
/db_xref="CDD:233654"
misc_feature 425157..425342
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:239902"
misc_feature order(425190..425192,425214..425216,425256..425258,
425262..425264)
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239902"
misc_feature order(425196..425198,425208..425210,425250..425252,
425256..425258)
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239902"
misc_feature 425514..425705
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 425664..425849
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:239049"
misc_feature 425787..425798
/gene="nusA"
/locus_tag="Cphamn1_0401"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239049"
gene 426304..429039
/locus_tag="Cphamn1_0402"
/db_xref="GeneID:6374064"
CDS 426304..429039
/locus_tag="Cphamn1_0402"
/note="TIGRFAM: translation initiation factor IF-2; small
GTP-binding protein;
PFAM: protein synthesis factor GTP-binding; GTP-binding
protein HSR1-related; elongation factor Tu domain 2
protein; translation initiation factor IF-2 domain
protein; Miro domain protein;
KEGG: cte:CT0241 translation initiation factor IF-2"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_001958848.1"
/db_xref="GI:189499378"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="InterPro:IPR013684"
/db_xref="GeneID:6374064"
/translation="MSPEGKEMRYRISDIARELQVSPQEVLHFVKEAGGKVASTSSMV
KGPMRDLILDQFSDEKKLVDETRKIREEKQLRLSRLEEQSRKTYEKEQQLKDTISGRP
ERAAAKPRTEVPSESVEPEPVKEMPETVAEPEVTGVVSEPDENVAAVAEEVKSPVEET
SETVAEKNDVEGQVSYEVPQKIGGLTVFGTLDVQSSLGMGGEADKKKQRKKRFKEQAD
ELKDEFDIKAKEGGKEREAGGESRKPVKKGSEETKKTTVESTSAKKKKGKKKKKPEVD
EKTIEKNIRSTISGMDDTSGSGSSRQKFRKMRKIEREKELEEAEAIKEAERSIIRVTE
FATAHELADLMGILPKEIIQHCFTMGKFVTINQRLDKETIELVAMEFGFDAEFVSEVE
ATEVTEIEDEEEELEIRPPVVTIMGHVDHGKTSLLDYIRSSNVVAGESGGITQHIGAY
EVSLDGDRKITFLDTPGHEAFTAMRARGAQVTDIVILVVSADDSVMPQTVEAINHSKA
AGVPIVVAINKIDKPDANPEKIKTQLSEAGVLVEDWGGEYQCQEISAKQGTGIDALME
KVLTEAEIRELKANFSEDVPSRGIIVEAELDKGKGVVSTVLVQRGFLKVGDPFVAGHT
MGKVRALMDERGKRIREAGPSQPVSVLGFEDLPQSGDLFTVMPSDREAREIAQKRQII
RREHEFRRSTRVKLDSIARQIKEGLMKELSVILKADTDGSIQALADGLMKIHNDEVKV
QIIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNAKRLAEKEDLDVRFYSVIYHVIE
DIEQALEGMLSPELHEESIGSLEIRQVFKVPKIGNVAGCYMLEGKIFRDSKVRLLRDG
VQIYDGVLDSLKRFKDDVKEVDAGYECGLNLKGYSDIKVGDIVEGYRIVEKKRKL"
misc_feature 427300..427455
/locus_tag="Cphamn1_0402"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:218250"
misc_feature 427312..429036
/locus_tag="Cphamn1_0402"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:232995"
misc_feature 427543..428025
/locus_tag="Cphamn1_0402"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 427552..427575
/locus_tag="Cphamn1_0402"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(427555..427557,427561..427563,427573..427578,
427585..427587,427594..427599,427645..427650,
427705..427710,427777..427782,427885..427887,
427897..427899)
/locus_tag="Cphamn1_0402"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(427558..427578,427708..427710,427855..427860,
427864..427869,427963..427971)
/locus_tag="Cphamn1_0402"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 427627..427647
/locus_tag="Cphamn1_0402"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 427633..427635
/locus_tag="Cphamn1_0402"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 427693..427704
/locus_tag="Cphamn1_0402"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 427699..427755
/locus_tag="Cphamn1_0402"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 427855..427866
/locus_tag="Cphamn1_0402"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 427963..427971
/locus_tag="Cphamn1_0402"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 428065..428343
/locus_tag="Cphamn1_0402"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:239673"
misc_feature 428383..428709
/locus_tag="Cphamn1_0402"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:221359"
misc_feature 428755..429003
/locus_tag="Cphamn1_0402"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:239663"
gene 429132..429482
/locus_tag="Cphamn1_0403"
/db_xref="GeneID:6374065"
CDS 429132..429482
/locus_tag="Cphamn1_0403"
/note="PFAM: ribosome-binding factor A;
KEGG: cte:CT0242 ribosome-binding factor A"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_001958849.1"
/db_xref="GI:189499379"
/db_xref="InterPro:IPR000238"
/db_xref="GeneID:6374065"
/translation="MTIRTEKVASLLQKELSAIFEKELPRSGPLMTVVQVKVTTDLGI
ARVYVSIIGSEKERKTAIAHLQNETRYIRKLLSAKIRHQFRRIPELEFYEDRLYEKAE
RIDLLIKQALGTSK"
misc_feature 429141..429455
/locus_tag="Cphamn1_0403"
/note="Ribosome-binding factor A; Region: RBFA; pfam02033"
/db_xref="CDD:216854"
gene 429585..430307
/locus_tag="Cphamn1_0404"
/db_xref="GeneID:6374066"
CDS 429585..430307
/locus_tag="Cphamn1_0404"
/note="TIGRFAM: tRNA pseudouridine synthase B;
PFAM: pseudouridylate synthase TruB domain protein;
KEGG: cte:CT0243 tRNA pseudouridine synthase B"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_001958850.1"
/db_xref="GI:189499380"
/db_xref="InterPro:IPR002501"
/db_xref="InterPro:IPR014780"
/db_xref="GeneID:6374066"
/translation="MIEAKKLSTVSPTGDFLLVDKPVEWTSFDVVAKIRNTYTGAGLR
RKVGHCGTLDPKASGLLILATGRKTKQIASLEVLDKTYEGVIKLGVMTESFDAELPEY
GQCSVSHLTDREIHDAAAGLEGRCMQKPPMYSAVWHQGKRLYEFARKGQDIKERKTRE
ITVNSFEITAIDLPFVRFRTNVSKGAYIRVLADDLGRNLAVGGYLSSLRRVAIGEYRI
EDARSVIDTVERIKREANDLAE"
misc_feature 429630..430253
/locus_tag="Cphamn1_0404"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature 429630..430247
/locus_tag="Cphamn1_0404"
/note="tRNA pseudouridine(55) synthase; Region: TruB;
TIGR00431"
/db_xref="CDD:129523"
misc_feature order(429660..429662,429666..429668,429675..429677,
429723..429731,429735..429749,429789..429791,
429798..429803,429810..429812,429822..429824,
429828..429830,429981..429995,430059..430061,
430134..430151,430212..430214)
/locus_tag="Cphamn1_0404"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature order(429735..429746,430149..430151)
/locus_tag="Cphamn1_0404"
/note="active site"
/db_xref="CDD:211339"
gene 430315..431280
/locus_tag="Cphamn1_0405"
/db_xref="GeneID:6374067"
CDS 430315..431280
/locus_tag="Cphamn1_0405"
/note="TIGRFAM: riboflavin biosynthesis protein RibF;
PFAM: FAD synthetase; Riboflavin kinase;
KEGG: pvi:Cvib_1558 FMN adenylyltransferase / riboflavin
kinase"
/codon_start=1
/transl_table=11
/product="riboflavin biosynthesis protein RibF"
/protein_id="YP_001958851.1"
/db_xref="GI:189499381"
/db_xref="InterPro:IPR002606"
/db_xref="InterPro:IPR015864"
/db_xref="InterPro:IPR015865"
/db_xref="GeneID:6374067"
/translation="MRVVLYKGGRVRDYYSGEEIDFAPEPSAVTVGSYDGVHAGHRRI
ISQMVASASARGLRTVVITFEPHPRKIVNRDPSGQIRLLTLLEEKAVLIEELGVDWLF
VVHFDRFFAAQSSESFIQQVLLDSIGAKTIVIGYDHGFGHDRKGGVSTLRRMAEQKRF
DVLVVDEVRLQAEHFSSTRIRALLGEGRIREANLFLGAPYLISGDVVHGEKKGREIGF
PTVNLRIGSSDKLLPKYGVYIATVIIDGRVFKAMMNIGLRPTVSEGSSPLCEAHILGH
KGELYGKRLTFHLLDRVRDEMKFPSFEALQEQLKKDQKFVEQYKN"
misc_feature 430381..431277
/locus_tag="Cphamn1_0405"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:235536"
misc_feature 430393..430941
/locus_tag="Cphamn1_0405"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature order(430408..430419,430426..430428,430435..430437,
430723..430725,430813..430815,430837..430845)
/locus_tag="Cphamn1_0405"
/note="active site"
/db_xref="CDD:185679"
misc_feature 430897..431277
/locus_tag="Cphamn1_0405"
/note="Riboflavin kinase; Region: Flavokinase; pfam01687"
/db_xref="CDD:190069"
gene 431327..431596
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/db_xref="GeneID:6374068"
CDS 431327..431596
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_001958852.1"
/db_xref="GI:189499382"
/db_xref="InterPro:IPR000589"
/db_xref="InterPro:IPR005290"
/db_xref="GeneID:6374068"
/translation="MSVTKEIKTDIINQFGGSEKNTGQTEVQIALFSRRISDLTGHLK
LHPKDKHSRHGLLKLVGKRKSLVAYLKKTDIGRYRKVLADLDLRK"
misc_feature 431348..431584
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:238213"
misc_feature order(431348..431350,431399..431401,431408..431410,
431429..431431,431441..431443,431450..431452,
431462..431464,431468..431473,431477..431482,
431519..431521,431531..431533)
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(431414..431416,431423..431428,431435..431437,
431444..431446,431564..431566,431576..431578)
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(431504..431506,431516..431518,431579..431584)
/gene="rpsO"
/locus_tag="Cphamn1_0406"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:238213"
gene 431686..432573
/locus_tag="Cphamn1_0407"
/db_xref="GeneID:6374069"
CDS 431686..432573
/locus_tag="Cphamn1_0407"
/note="PFAM: YicC domain protein; domain of unknown
function DUF1732;
KEGG: cte:CT0246 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958853.1"
/db_xref="GI:189499383"
/db_xref="InterPro:IPR005229"
/db_xref="InterPro:IPR013527"
/db_xref="InterPro:IPR013551"
/db_xref="GeneID:6374069"
/translation="MLESMTGYGSAERVDAGVLVSAEVRSVNNRFADISIKLPRQFSV
YEHDARELIRSYVQRGKVSAFVQVKLDEQMALPLAVNREKTRAISKLLHTVRSEAGID
TPLTLDHILRFSEVFDADNQLLDKTDELWCVVSDVLREALEGMKKMRLQEGEELAGDC
TGRIATIEATLEEVQELSRDNLVTVRQRLSEKVTAIAGKDIEYSRDRLEMEIVLMSDK
LDITEECIRFASHNKFFTDELRNSQSGSGRKLNFLLQEQLREANTIASKSQNADISQR
IVLVKEELEKMREQLQNIE"
misc_feature 431686..432570
/locus_tag="Cphamn1_0407"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:236993"
misc_feature 431689..432162
/locus_tag="Cphamn1_0407"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:217714"
misc_feature 432310..432570
/locus_tag="Cphamn1_0407"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene 432741..433316
/gene="gmk"
/locus_tag="Cphamn1_0408"
/db_xref="GeneID:6374070"
CDS 432741..433316
/gene="gmk"
/locus_tag="Cphamn1_0408"
/EC_number="2.7.4.8"
/note="Essential for recycling GMP and indirectly, cGMP"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_001958854.1"
/db_xref="GI:189499384"
/db_xref="InterPro:IPR008144"
/db_xref="InterPro:IPR008145"
/db_xref="InterPro:IPR017665"
/db_xref="GeneID:6374070"
/translation="MTDRQGKLIVFSAPSGTGKSTVARKVLERVEGLEFSVSATTRSR
REGEVDGKNYYYLTKKAFEEIIDSDGFIEYEHFFGNFYGTLLDKTEAAVASGKHMLFD
LDVKGALNLKKHFPENTLLLFLKPPSLQELKKRLDGRESEDEDALNERLKRAEFELSF
AHQFDHEVVNDNLSRAVDEVTALITDFLSKQ"
misc_feature 432750..433292
/gene="gmk"
/locus_tag="Cphamn1_0408"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:223272"
misc_feature 432762..433280
/gene="gmk"
/locus_tag="Cphamn1_0408"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:238026"
misc_feature order(432777..432779,432795..432797,432843..432845,
432864..432866,432873..432875,432900..432902,
432969..432971,432984..432986)
/gene="gmk"
/locus_tag="Cphamn1_0408"
/note="catalytic site [active]"
/db_xref="CDD:238026"
misc_feature order(432777..432779,432795..432797)
/gene="gmk"
/locus_tag="Cphamn1_0408"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:238026"
STS 433069..433989
/standard_name="D11S1971"
/db_xref="UniSTS:3092"
gene 433331..433684
/locus_tag="Cphamn1_0409"
/db_xref="GeneID:6374071"
CDS 433331..433684
/locus_tag="Cphamn1_0409"
/note="KEGG: plt:Plut_1772 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958855.1"
/db_xref="GI:189499385"
/db_xref="GeneID:6374071"
/translation="MSVTPVDLNKLRASHDNLYATVVAISKRAKMMHEEERAELEEKL
LPYKEMIRNPASESESDKVFPEQVAISLEFEAREKTAQRAIDQFLLNTYDYLLQDQGD
VNKNRDEEENETDGN"
gene 433665..434159
/locus_tag="Cphamn1_0410"
/db_xref="GeneID:6374072"
CDS 433665..434159
/locus_tag="Cphamn1_0410"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: cte:CT0249 glutathione S-transferase, fosfomycin
resistance protein"
/codon_start=1
/transl_table=11
/product="Glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_001958856.1"
/db_xref="GI:189499386"
/db_xref="InterPro:IPR004360"
/db_xref="InterPro:IPR004361"
/db_xref="InterPro:IPR011588"
/db_xref="GeneID:6374072"
/translation="MKLTGINQITLRVNDVRVAEDFYIGVLGLNVEYRAGANISYLRV
NSDMIVLVKAETPGVPEARDIRVDHFGFRLSSDAEVDEAAEYLDAQGVHLITKPAQRR
EGRAFFVMDPDGNLIEFYSMKSRELDASNKDIDSSFPDEFAADTRKKMAEGGSAKKTR
RSRK"
misc_feature 433677..434021
/locus_tag="Cphamn1_0410"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
misc_feature 433695..434024
/locus_tag="Cphamn1_0410"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:246679"
misc_feature order(433698..433700,433776..433778,433812..433814,
433818..433820,433869..433871,433986..433988,
434010..434012,434016..434018)
/locus_tag="Cphamn1_0410"
/note="active site"
/db_xref="CDD:211348"
gene complement(434199..434951)
/locus_tag="Cphamn1_0411"
/db_xref="GeneID:6374073"
CDS complement(434199..434951)
/locus_tag="Cphamn1_0411"
/note="PFAM: Nucleotidyl transferase;
KEGG: pvi:Cvib_1552 UDP-N-acetylglucosamine
pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase"
/protein_id="YP_001958857.1"
/db_xref="GI:189499387"
/db_xref="InterPro:IPR005835"
/db_xref="GeneID:6374073"
/translation="MSLAIIIMAAGKGTRMKSDLAKVLHKANGRPVIEYVLDKTTALD
PDKTVLIVGHQADKVRKATSHFPVVWALQEPQLGTGHAIMQAEEPLSFFKGDILILSG
DAPLVTLSTLRKLIESHRNQSAAATVLTADLTDPSGYGRIIRNGNTSDVSRIVEHKDA
SPEERLIHEINSGVYVFRSDTLFHSLSKISDKNAQQEYYLTDVFSICFENGEKVSACK
TENADEIKGINTVEQLREAERVLLKNSTDSRS"
misc_feature complement(434250..434939)
/locus_tag="Cphamn1_0411"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature complement(order(434643..434645,434649..434651,
434706..434708,434715..434717,434799..434801,
434922..434930))
/locus_tag="Cphamn1_0411"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature complement(order(434265..434267,434643..434645))
/locus_tag="Cphamn1_0411"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
gene complement(435106..435489)
/locus_tag="Cphamn1_0412"
/db_xref="GeneID:6374074"
CDS complement(435106..435489)
/locus_tag="Cphamn1_0412"
/EC_number="4.1.1.11"
/note="Converts L-aspartate to beta-alanine and provides
the major route of beta-alanine production in bacteria.
Beta-alanine is essential for the biosynthesis of
pantothenate (vitamin B5)"
/codon_start=1
/transl_table=11
/product="aspartate alpha-decarboxylase"
/protein_id="YP_001958858.1"
/db_xref="GI:189499388"
/db_xref="InterPro:IPR003190"
/db_xref="GeneID:6374074"
/translation="MRVHLLKSKIHNAVVTSGDLQYEGSITIDSELLDLANMIPNEKV
LCVNNNNGERFETYIIEGKAGSREIQLNGAAARCALPGDEIIIMTFAEIEAREAKSFK
PMILIVDKHNNPKRRHLVGEEDNPL"
misc_feature complement(435154..435480)
/locus_tag="Cphamn1_0412"
/note="Aspartate alpha-decarboxylase or L-aspartate
1-decarboxylase, a pyruvoyl group-dependent decarboxylase
in beta-alanine production; Region: Asp_decarbox; cd06919"
/db_xref="CDD:132994"
misc_feature complement(order(435187..435189,435214..435222,
435232..435234,435256..435261,435265..435270,
435316..435330,435334..435336,435343..435345,
435349..435351,435361..435366,435373..435375,
435379..435381,435421..435432,435454..435459,
435463..435465,435469..435480))
/locus_tag="Cphamn1_0412"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:132994"
misc_feature complement(order(435316..435318,435415..435420,
435457..435459,435463..435465))
/locus_tag="Cphamn1_0412"
/note="active site"
/db_xref="CDD:132994"
gene complement(435587..436141)
/locus_tag="Cphamn1_0413"
/db_xref="GeneID:6374075"
CDS complement(435587..436141)
/locus_tag="Cphamn1_0413"
/note="PFAM: protein of unknown function DUF1239;
KEGG: pvi:Cvib_1550 protein of unknown function DUF1239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958859.1"
/db_xref="GI:189499389"
/db_xref="InterPro:IPR010664"
/db_xref="GeneID:6374075"
/translation="MQNCLVRILGYCLILCCVGCAAPEKDNRSADTSFIGEELPVQES
WNVSMKIFKKDKIHADVVAGHFAEYKKNDIITRRLDGGVQVTFYNDLGRPSSTLTSER
GTVYDNNDMEAFDNVVIRSEDSTVVHTDYIKRFDKEKRLWSDTYVTINTQGETIRGYG
FESDESLKNYTIFKASGEAEVQRR"
misc_feature complement(435623..>435889)
/locus_tag="Cphamn1_0413"
/note="Lipopolysaccharide-assembly, LptC-related; Region:
LptC; pfam06835"
/db_xref="CDD:219198"
gene complement(436159..436749)
/locus_tag="Cphamn1_0414"
/db_xref="GeneID:6374076"
CDS complement(436159..436749)
/locus_tag="Cphamn1_0414"
/note="PFAM: outer membrane chaperone Skp (OmpH);
KEGG: pvi:Cvib_1549 outer membrane chaperone Skp (OmpH)"
/codon_start=1
/transl_table=11
/product="outer membrane chaperone Skp"
/protein_id="YP_001958860.1"
/db_xref="GI:189499390"
/db_xref="InterPro:IPR005632"
/db_xref="GeneID:6374076"
/translation="MFHGTIATKTRELTMKIMSRNSASTLLPRTMFFAVILSFFFVSP
ELLAVTGQKTGVIDATSVLNQMPETKKAENILKATGTQWQKGLDNLKKSFQTSAASYE
KQKSSLSKAAREQKEKDLNVKLQSIQKYQMDKFGPNGALEKKKAELLAPIRQKLLAAV
KAVAVKEGFSVIIDKQAMIYGSSSADITAKVINQLK"
sig_peptide complement(436603..436749)
/locus_tag="Cphamn1_0414"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.898) with cleavage site probability 0.833 at
residue 49"
misc_feature complement(436162..436593)
/locus_tag="Cphamn1_0414"
/note="periplasmic chaperone; Provisional; Region:
PRK10780"
/db_xref="CDD:182724"
misc_feature complement(436162..436587)
/locus_tag="Cphamn1_0414"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:214922"
gene complement(436954..438102)
/locus_tag="Cphamn1_0415"
/db_xref="GeneID:6374077"
CDS complement(436954..438102)
/locus_tag="Cphamn1_0415"
/note="TIGRFAM: DNA protecting protein DprA;
PFAM: SMF family protein;
KEGG: cte:CT0255 DprA/SMF protein, DNA processing factor"
/codon_start=1
/transl_table=11
/product="DNA protecting protein DprA"
/protein_id="YP_001958861.1"
/db_xref="GI:189499391"
/db_xref="InterPro:IPR003488"
/db_xref="GeneID:6374077"
/translation="MIFSDSLDSSQQKINLLVLSRVPGLGPARIRALKRQFGTSNAIF
HADERALAVIPGIGRKLARTITDFFRSPRNLDLARKSAERQLALLDRYNATLVTIDEA
SYPPLLKEIYDPPPYLFVRGDIQAAHSPCLSVVGTRQATLYGRKAVEHICRGLVTKGF
TIVSGFAYGIDMAAHKATLDNGGKTIAILAGGVDNPHTDPAGKVWPRIIEEGAILSEE
WLESTISPSKFPKRNRLISGISKGTVIVESKSRGGSLITASYALDQNREVFSVPGSIF
STTSAGPNALIEKSQAKLVNGAEDIIAELCSYPATPEKTIPDTPVRVPLTPEETIILD
HFSEEPLHIDMLAEKTGIEPSELLVHLFEMELKNLIEQQPGQMFCKNS"
misc_feature complement(436978..438078)
/locus_tag="Cphamn1_0415"
/note="Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion];
Region: Smf; COG0758"
/db_xref="CDD:223829"
misc_feature complement(437188..437847)
/locus_tag="Cphamn1_0415"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
gene complement(438092..439090)
/locus_tag="Cphamn1_0416"
/db_xref="GeneID:6374078"
CDS complement(438092..439090)
/locus_tag="Cphamn1_0416"
/note="PFAM: Polyprenyl synthetase;
KEGG: pvi:Cvib_1546 geranyltranstransferase"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_001958862.1"
/db_xref="GI:189499392"
/db_xref="InterPro:IPR000092"
/db_xref="GeneID:6374078"
/translation="MNISVTLEQVEQKYRQYHKRINDELGKCFTKDSPRSLYGPARYI
LDGTGKRIRPFLTLLAAEAVCGSSENAIKTALAVEILHNFTLVHDDIMDQADLRHGRP
TVHVKWDSTAAILSGDMMIAFAYECALQTKTARHDELVHILNDANITICEGQAIDMEL
EQRQDATIADYLDMIAKKTGRLISASLEAGGIVGDADSEQIEKLMLFGDKIGRAFQVQ
DDYLDIMAENGKSGKVPGGDVINGKKTYLLLRSLELTTGQERDMLQFVIDNKGISPDR
VPEIRAIYEQCGVLDEARDLINTDTEDALSAVDTLPYAEGREYLKGFALKLMKRDF"
misc_feature complement(438095..439060)
/locus_tag="Cphamn1_0416"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature complement(438101..438997)
/locus_tag="Cphamn1_0416"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(438362..438364,438377..438379,
438392..438394,438422..438424,438431..438436,
438545..438547,438554..438559,438620..438622,
438629..438631,438794..438799,438812..438817,
438821..438829,438833..438841,438848..438850))
/locus_tag="Cphamn1_0416"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(438812..438841)
/locus_tag="Cphamn1_0416"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(438362..438364,438377..438379,
438392..438394,438422..438424,438431..438436,
438557..438559,438620..438622,438794..438799,
438812..438814,438821..438826))
/locus_tag="Cphamn1_0416"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(438431..438436,438557..438559,
438794..438799,438812..438814,438821..438826))
/locus_tag="Cphamn1_0416"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(438557..438559,438620..438622,
438794..438799,438812..438814,438821..438826))
/locus_tag="Cphamn1_0416"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(438356..438370,438377..438394,
438410..438415,438764..438808))
/locus_tag="Cphamn1_0416"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(438362..438364,438377..438379,
438392..438394,438422..438424,438431..438436))
/locus_tag="Cphamn1_0416"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(439098..440171)
/locus_tag="Cphamn1_0417"
/db_xref="GeneID:6374079"
CDS complement(439098..440171)
/locus_tag="Cphamn1_0417"
/EC_number="5.3.3.2"
/note="catalyzes the isomerization of isopentenyl
pyrophosphate to dimethylallyl diphosphate"
/codon_start=1
/transl_table=11
/product="isopentenyl pyrophosphate isomerase"
/protein_id="YP_001958863.1"
/db_xref="GI:189499393"
/db_xref="InterPro:IPR000262"
/db_xref="InterPro:IPR001872"
/db_xref="InterPro:IPR011179"
/db_xref="GeneID:6374079"
/translation="MNASKTITVNRKQSHVETCLKRNVCFDTKTTGFERYEFTHNAAP
EINHSDIDLATSFLGHRISYPFMISSMTGGYEQAENLNRILAQTAEKLGIPLGVGSMR
QALENASFRESFSVVRQSAPSVPVLANIGAPEIAQGLTKKELDTLIDIVRADALIVHL
NPAQELFQPEGNTRFKNFLTQLKKITETLKVPVIVKEVGCGISPETAKNLVEKGVTII
DIAGAGGISWQKVEEERYLQQFQHENRFSPSALEELLNWGIPTARSLTGVAALKSNNT
HYRHIQIIASGGISNGVDIAKAIALGADLCASAGQMLKALHEQRLEETILTWMNDLKA
VMFLTGTKDIRQLQQTSISLKQG"
misc_feature complement(439107..440162)
/locus_tag="Cphamn1_0417"
/note="isopentenyl pyrophosphate isomerase; Provisional;
Region: PRK05437"
/db_xref="CDD:235465"
misc_feature complement(439125..440141)
/locus_tag="Cphamn1_0417"
/note="Isopentenyl-diphosphate:dimethylallyl diphosphate
isomerase type 2 (IDI-2) FMN-binding domain. Two types of
IDIs have been characterized at present. The long known
IDI-1 is only dependent on divalent metals for activity,
whereas IDI-2 requires a metal; Region: IDI-2_FMN;
cd02811"
/db_xref="CDD:239205"
misc_feature complement(order(439182..439184,439191..439193,
439290..439295,439371..439373,439395..439397,
439557..439559,439569..439574,439581..439583,
439692..439694,440037..440039,440046..440057))
/locus_tag="Cphamn1_0417"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:239205"
misc_feature complement(order(439242..439244,439308..439316,
439584..439586,439695..439697,439785..439787,
439872..439874,439950..439961))
/locus_tag="Cphamn1_0417"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239205"
misc_feature complement(order(439929..439934,439953..439955))
/locus_tag="Cphamn1_0417"
/note="homodimer contacts [polypeptide binding]; other
site"
/db_xref="CDD:239205"
misc_feature complement(order(439242..439247,439314..439316,
439584..439586,439695..439697,439785..439787,
439872..439874))
/locus_tag="Cphamn1_0417"
/note="putative active site [active]"
/db_xref="CDD:239205"
misc_feature complement(order(439695..439697,439779..439781,
439785..439787))
/locus_tag="Cphamn1_0417"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:239205"
gene 440287..441555
/locus_tag="Cphamn1_0418"
/db_xref="GeneID:6374080"
CDS 440287..441555
/locus_tag="Cphamn1_0418"
/note="PFAM: protein of unknown function DUF214;
KEGG: cch:Cag_0371 ABC transporter, integral membrane
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958864.1"
/db_xref="GI:189499394"
/db_xref="InterPro:IPR003838"
/db_xref="GeneID:6374080"
/translation="MLSTLVAIAFRHLTGRRRQTLTTMTGVAVSTMVLITTISLTRGL
LDSFVETIVDVAPHITIKGEPVEPPPVDLLGSAGGSRYAFIEENIQKEERKEVRNYRQ
VLSILNSAEYASAVTASSPYVVSRVIMIKGNTNQPILIKGVNIEQENAISKVGQQLTA
GDLAFFEKTPNALLVGKTVADDLGLELHDEVSVVPASGPARQCKVAGVFFSGVNAVDN
TVYVSLKFAQILEGLPADKVTGIGLKVSEPLVNQELARELERITGYISDTWQEENASV
LSLFNRIGFIVFSLVAFVGVVSGFGVANILVTTVFEKSRDIAILKSVGFSSGALVGMF
ILEGFLVGFAGALAGGVLATGSINLLASIPIESSQGPLTKTGFSMSWNPLYFFFVIFI
TVLISTIAATIPSTRVAKLEPVQVLRDSSL"
misc_feature 440308..441543
/locus_tag="Cphamn1_0418"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:226957"
misc_feature 440311..441069
/locus_tag="Cphamn1_0418"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:221725"
misc_feature 441196..441525
/locus_tag="Cphamn1_0418"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:217187"
gene complement(441823..443649)
/locus_tag="Cphamn1_0419"
/db_xref="GeneID:6374081"
CDS complement(441823..443649)
/locus_tag="Cphamn1_0419"
/note="PFAM: ABC transporter transmembrane region; ABC
transporter related;
SMART: AAA ATPase;
KEGG: cte:CT0259 ABC transporter, ATP-binding protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_001958865.1"
/db_xref="GI:189499395"
/db_xref="InterPro:IPR001140"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="GeneID:6374081"
/translation="MSSGKEQSKGFTPQKDDLLSSGKKGPADRYIILRLLSYVKPYKG
LLASAIAITLAGSVLGPLRPYMTKLAIDDYIAKGNIKGLALISLILLFIILLDGLKQY
AATYLTQLLGQKAVLNLRMDVFRHLQKLSVSFYDRNPAGRLITRATNDVEALNEMLSS
GIVTIIGDIMQLLFIVILMFMIDTELTLIVLSILPFMIYATMSFKSRVRKAFQDVRAH
LAKLNSFFQEHISGMSIVQLFDRGDKEYEKHVAINREYRDANIKTVFYFSVYYPLIEL
LSSTAAGLVIWYSGLRMLEGDLTLGIVVSFVQYIWLFFRPLQHLSDRFNILQTALASS
DRIFRLLDEKDIVKEPENPVNPGSFRDEIAFTNVWSAYSADNWILKDISFSVKRGEKI
AIVGATGSGKTTIINLLSKLYTYQKGSVTLDGAELSRIPERTLRKIVGVVMQDVFLFS
GTIKENLSFGKPDVSDEEIYHAVKTVGAERFIEKLPEGYNYRVNENGSGLSAGQKQLI
AFVRALLYNPEILVLDEATSSVDTETEQLIETATANLMENRTSIIIAHRLSTVQHADR
IIVMHKGTIKESGSHQELLAQKGLYYKLYLLQHPEKMRLQTG"
misc_feature complement(441901..443559)
/locus_tag="Cphamn1_0419"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:224055"
misc_feature complement(442699..>443346)
/locus_tag="Cphamn1_0419"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:216049"
misc_feature complement(441901..442566)
/locus_tag="Cphamn1_0419"
/note="ATP-binding cassette domain of glucan transporter
and related proteins, subfamily C; Region:
ABCC_Glucan_exporter_like; cd03254"
/db_xref="CDD:213221"
misc_feature complement(442441..442464)
/locus_tag="Cphamn1_0419"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213221"
misc_feature complement(order(441982..441984,442075..442080,
442318..442320,442438..442446,442450..442455))
/locus_tag="Cphamn1_0419"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213221"
misc_feature complement(442318..442329)
/locus_tag="Cphamn1_0419"
/note="Q-loop/lid; other site"
/db_xref="CDD:213221"
misc_feature complement(442123..442152)
/locus_tag="Cphamn1_0419"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213221"
misc_feature complement(442075..442092)
/locus_tag="Cphamn1_0419"
/note="Walker B; other site"
/db_xref="CDD:213221"
misc_feature complement(442057..442068)
/locus_tag="Cphamn1_0419"
/note="D-loop; other site"
/db_xref="CDD:213221"
misc_feature complement(441976..441996)
/locus_tag="Cphamn1_0419"
/note="H-loop/switch region; other site"
/db_xref="CDD:213221"
gene complement(443686..445101)
/locus_tag="Cphamn1_0420"
/db_xref="GeneID:6374082"
CDS complement(443686..445101)
/locus_tag="Cphamn1_0420"
/EC_number="5.4.2.8"
/note="PFAM: phosphoglucomutase/phosphomannomutase ;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain I; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain II;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain III;
KEGG: cte:CT0260 phosphoglucomutase/phosphomannomutase
family protein"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="YP_001958866.1"
/db_xref="GI:189499396"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="InterPro:IPR016066"
/db_xref="GeneID:6374082"
/translation="MISVSGIRGVVGESLSPAVLTSFTQAFAAWVHTKSNVEERTEKN
ALPKIVIGRDTRPTGEAVSDLVAGTLALSGCRVVDLGIATTPTVEIATTEEHADGGII
ITASHNPVEWNALKLLNRNGEFLNETELQELLNIFRTEQFTPADWAHVGSSEKNSLYD
TLHIDRILALSSIDIDSIAEQRFRVLVDAVEGAGSSVVPELCRRLGVSQVETIFCNGS
GIFPRNPEPLPENLTSTVEILKDKACDFAIVVDPDADRLALICEDGSMFGEEYSLVVC
ADFYLRHKKGAVVNNLSSSRALRDIAEKHGQSFFSANVGEANVVDLMKEKNAVIGGEG
NGGIILPELHYGRDALAGIALMLQAFTDWREKSSQNRTLSGFRKCFPDYFMAKHKIRL
AERPENFDSIFTEISRAHPEAEVNREDGLKLDFPEEWVHIRPSNTEPVLRIYTEAKNR
KRAEMLADTFSQEISSRIETL"
misc_feature complement(443710..445101)
/locus_tag="Cphamn1_0420"
/note="phosphoglucosamine mutase; Region: Arch_GlmM;
TIGR03990"
/db_xref="CDD:234431"
misc_feature complement(443719..445101)
/locus_tag="Cphamn1_0420"
/note="The alpha-D-phosphohexomutase superfamily includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this family include the
phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine...; Region: phosphohexomutase; cl03757"
/db_xref="CDD:243519"
misc_feature complement(order(443776..443778,443791..443799,
443803..443805,444091..444093,444097..444099,
444103..444105,444154..444162,444223..444225,
444334..444339,444343..444345,444349..444351,
444754..444756,444778..444786,445078..445080,
445087..445089,445093..445095))
/locus_tag="Cphamn1_0420"
/note="active site"
/db_xref="CDD:100086"
misc_feature complement(order(443776..443778,443791..443799,
443803..443805,444091..444093,444097..444099,
444103..444105,444154..444156,444160..444162,
444223..444225,444334..444336,444784..444786,
445087..445089))
/locus_tag="Cphamn1_0420"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100086"
misc_feature complement(order(444337..444339,444343..444345,
444349..444351,444784..444786))
/locus_tag="Cphamn1_0420"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100086"
gene 445523..445798
/gene="rpsT"
/locus_tag="Cphamn1_0421"
/db_xref="GeneID:6374083"
CDS 445523..445798
/gene="rpsT"
/locus_tag="Cphamn1_0421"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_001958867.1"
/db_xref="GI:189499397"
/db_xref="InterPro:IPR002583"
/db_xref="GeneID:6374083"
/translation="MPLHKSAEKRLRQSARRNERNRARKKELKVLLKTVQKLVDTNAD
KKEVEAAYRSAIQKLDRLGVKRYIHPNKASRKKSQLSRMLNNYMKAE"
misc_feature <445643..445789
/gene="rpsT"
/locus_tag="Cphamn1_0421"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 445907..446509
/gene="ruvA"
/locus_tag="Cphamn1_0422"
/db_xref="GeneID:6374084"
CDS 445907..446509
/gene="ruvA"
/locus_tag="Cphamn1_0422"
/note="plays an essential role in ATP-dependent branch
migration of the Holliday junction"
/codon_start=1
/transl_table=11
/product="Holliday junction DNA helicase RuvA"
/protein_id="YP_001958868.1"
/db_xref="GI:189499398"
/db_xref="InterPro:IPR000085"
/db_xref="InterPro:IPR003583"
/db_xref="InterPro:IPR011114"
/db_xref="InterPro:IPR013849"
/db_xref="InterPro:IPR013850"
/db_xref="GeneID:6374084"
/translation="MFTYFRGELIEASPDEAVIEVSGVGYLLSISATTYRQLPEPGRE
VLVLAHLHVKEDLMQLFGFLEEEERQLFRLLLSISGVGPKLALAILSGLQVHEIQEAI
VSNMPERLFEITGVGKKTAARIVLELRDRILKLRPSGGTKSVSRLSESSMRDDAVNAL
VTLGFLRSVAQKAVTESLTSLRNPQVEDLVRDALLTIRTP"
misc_feature 445907..446488
/gene="ruvA"
/locus_tag="Cphamn1_0422"
/note="Holliday junction DNA helicase RuvA; Reviewed;
Region: ruvA; PRK00116"
/db_xref="CDD:234645"
misc_feature 445907..446074
/gene="ruvA"
/locus_tag="Cphamn1_0422"
/note="RuvA N terminal domain; Region: RuvA_N; pfam01330"
/db_xref="CDD:216437"
misc_feature 446357..446488
/gene="ruvA"
/locus_tag="Cphamn1_0422"
/note="RuvA, C-terminal domain; Region: RuvA_C; pfam07499"
/db_xref="CDD:219432"
gene 446481..447791
/locus_tag="Cphamn1_0423"
/db_xref="GeneID:6374085"
CDS 446481..447791
/locus_tag="Cphamn1_0423"
/note="TIGRFAM: FolC bifunctional protein;
PFAM: cytoplasmic peptidoglycan synthetase domain protein;
Mur ligase middle domain protein;
KEGG: pvi:Cvib_1538 FolC bifunctional protein"
/codon_start=1
/transl_table=11
/product="bifunctional folylpolyglutamate synthase/
dihydrofolate synthase"
/protein_id="YP_001958869.1"
/db_xref="GI:189499399"
/db_xref="InterPro:IPR001645"
/db_xref="InterPro:IPR004101"
/db_xref="InterPro:IPR013221"
/db_xref="GeneID:6374085"
/translation="MHCSLFEPHESRNVTYQDAINFLFPLHRFGMKPGLERIRSLLNA
VGNPQKRLGKVVHIAGTNGKGTVAYAVASIFSSAGFTTGLYTSPHLVSFTERICVNGC
RIPEPQVAAYCDVLKEEVADRKATFFEVTTAMACMYFAEMQAEVSVIETGMGGRLDAT
NVVDPDYVIIPSIGKDHTAWLGDTVEKIAAEKAAIIKKGSRVYTAVKDPAALKPIIGR
AAAVGATLHVLQDFPEPVVHSAAVGELVFSLKARGADFRKLKSGVTGDFHASNLELAV
LAAHDAGIEERSIRKGLLSMRDFGYRARLERLSGKPDLLLDVAHNPDGMEKSVNTLLR
FSHAYRNVLVVLGLVRDKDVAEVVRCLKKLTKTVITVNLLSERGLPASELGGMCRNEG
FHAIVAETAAEALDIVKRTADKDDLVLVTGSFYLAGEVLKLMKR"
misc_feature 446523..447788
/locus_tag="Cphamn1_0423"
/note="Folylpolyglutamate synthase [Coenzyme metabolism];
Region: FolC; COG0285"
/db_xref="CDD:223362"
misc_feature 446658..>447029
/locus_tag="Cphamn1_0423"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 447390..447596
/locus_tag="Cphamn1_0423"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 448179..449468
/gene="rho"
/locus_tag="Cphamn1_0424"
/db_xref="GeneID:6374086"
CDS 448179..449468
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="An RNA-DNA helicase that actively releases nascent
mRNAs from paused transcription complexes"
/codon_start=1
/transl_table=11
/product="transcription termination factor Rho"
/protein_id="YP_001958870.1"
/db_xref="GI:189499400"
/db_xref="InterPro:IPR000194"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004665"
/db_xref="InterPro:IPR011112"
/db_xref="InterPro:IPR011113"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR013223"
/db_xref="GeneID:6374086"
/translation="MSNNSVSKGLDINMLQKKKVHELNTLAKEFGVVNAGLRKEELIY
KIIEAQSQKGSSTESGQVMVNTGVLQVIPEGYGFLRSSNYNYLSSPDDIYVSPSQIKR
FNMRTGDTVSGQVRAPKEGERFFALLKINTIDGKDPEITRERPFFENLTPLFPRERLI
LETSQNEHCGRIMDIFTPIGKGQRGVIVAQPKTGKTMFLQTVANAIIKNHPEVYLIVL
LIDERPEEVTDMQRSVPAEVVSSTFDEDPERHVQVADMVLEKAKRLVEVGNDVVILLD
SLTRLARAHNTIIPHSGKILSGGIDANALTKPKRFFGAARNIEEGGSLTIIATALVDT
GSRMDDVIFEEFKGTGNMELVLDRRLSERRMFPAIDILRSGTRKEELLFTQQELSRTW
LLRKYLADKNPIECMEFMREKISDTKDNKEFFKHMNA"
misc_feature 448206..449462
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:236490"
misc_feature 448221..448340
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; pfam07498"
/db_xref="CDD:203652"
misc_feature 448374..448574
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:239906"
misc_feature order(448386..448388,448392..448394,448404..448406,
448410..448412,448416..448418,448452..448454,
448458..448460,448533..448535,448542..448550)
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239906"
misc_feature 448686..449423
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:238548"
misc_feature order(448728..448730,449061..449063,449094..449096,
449103..449108,449115..449117,449124..449126,
449133..449135,449208..449213,449217..449231,
449235..449237,449307..449312,449352..449354,
449364..449366)
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238548"
misc_feature 448743..448766
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="Walker A motif; other site"
/db_xref="CDD:238548"
misc_feature order(448752..448754,448758..448769,449274..449276)
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238548"
misc_feature 448992..449006
/gene="rho"
/locus_tag="Cphamn1_0424"
/note="Walker B motif; other site"
/db_xref="CDD:238548"
gene complement(449465..449716)
/locus_tag="Cphamn1_0425"
/db_xref="GeneID:6374087"
CDS complement(449465..449716)
/locus_tag="Cphamn1_0425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958871.1"
/db_xref="GI:189499401"
/db_xref="GeneID:6374087"
/translation="MDSRVKHGNDRKWGGVMPTRVIFKLLHGMIWHPSGFSHQGLDSR
VRPVKQMLRFHGSGTGMTEKGKFPVLVRSFFLPLVIYSG"
gene 450178..450253
/locus_tag="Cphamn1_R0021"
/note="tRNA-Lys1"
/db_xref="GeneID:6374088"
tRNA 450178..450253
/locus_tag="Cphamn1_R0021"
/product="tRNA-Lys"
/db_xref="GeneID:6374088"
gene 450290..450371
/locus_tag="Cphamn1_R0022"
/note="tRNA-Leu1"
/db_xref="GeneID:6374089"
tRNA 450290..450371
/locus_tag="Cphamn1_R0022"
/product="tRNA-Leu"
/db_xref="GeneID:6374089"
gene 450447..450974
/locus_tag="Cphamn1_0426"
/db_xref="GeneID:6374090"
CDS 450447..450974
/locus_tag="Cphamn1_0426"
/note="PFAM: Tripartite ATP-independent periplasmic
transporter DctQ component;
KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic
transporter, DctQ component"
/codon_start=1
/transl_table=11
/product="tripartite AtP-independent periplasmic
transporter subunit DctQ"
/protein_id="YP_001958872.1"
/db_xref="GI:189499402"
/db_xref="InterPro:IPR007387"
/db_xref="GeneID:6374090"
/translation="MWFLKAYIRAIDSFTERSGRAVSWLTLLLVLVVVYDVFTRYVLS
SSSVAVQELEWHLFALLFLLAAPYTLKHNKHVRVDVFYARLTEKHKALVNIVGGICFL
VPFTLMVVFASLSFVGSAFVILESSPDPGGLPYRYLLKAAIPVGFLFFFLQGSAEIVR
SILVLADNPDTTEKE"
misc_feature 450447..450968
/locus_tag="Cphamn1_0426"
/note="Tripartite ATP-independent periplasmic
transporters, DctQ component; Region: DctQ; cl01181"
/db_xref="CDD:242349"
gene 450981..452301
/locus_tag="Cphamn1_0427"
/pseudo
/db_xref="GeneID:6374091"
gene complement(452473..453636)
/locus_tag="Cphamn1_0428"
/db_xref="GeneID:6374092"
CDS complement(452473..453636)
/locus_tag="Cphamn1_0428"
/note="PFAM: TRAP dicarboxylate transporter- DctP subunit;
KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic
compound transport system, periplasmic component"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter subunit DctP"
/protein_id="YP_001958873.1"
/db_xref="GI:189499403"
/db_xref="InterPro:IPR004682"
/db_xref="GeneID:6374092"
/translation="MIIQTTLNRMQDNPRRKFLKRSLQACTASLALSAPILNAGCNKS
SSSPADGAPAVHTGKRFQWKMLTTWPPTLPVLQDGPKLFAQWVKEMSEGRLDIQVYGG
GELVPALEAFGAVSQGTAEIGHGASYYWAGKVPAAQFFAAVPFGMNPQQMNAWIISGG
GLKLWEEVYAPFNLIPLSGGNTGIQMGGWFNKEINAVSDLKGLKMRIPGLGGKVISKA
GGSAILSSGSEIYTNLERGVIDATEWIGPYHDYMMGFYKVARYYYYPGWHEPGTNLEF
FINKGAFSQLPSDLQQIVRNAAARVHYWMLCEFEAQNNRYLQKLVNEENVDLRAFPSQ
VLEQLRTYSDEVIREIVSSDAQSKKIYDAYTSFRMQITPWADISEKIYYANAL"
sig_peptide complement(453517..453636)
/locus_tag="Cphamn1_0428"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.970) with cleavage site probability 0.669 at
residue 40"
misc_feature complement(452491..453594)
/locus_tag="Cphamn1_0428"
/note="TRAP-type mannitol/chloroaromatic compound
transport system, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: FcbT1; COG4663"
/db_xref="CDD:227009"
misc_feature complement(452590..453438)
/locus_tag="Cphamn1_0428"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; cl15441"
/db_xref="CDD:210106"
gene 454245..454985
/locus_tag="Cphamn1_0429"
/db_xref="GeneID:6374093"
CDS 454245..454985
/locus_tag="Cphamn1_0429"
/note="PFAM: Electron transfer flavoprotein
alpha/beta-subunit;
KEGG: pvi:Cvib_1536 electron transfer flavoprotein
beta-subunit"
/codon_start=1
/transl_table=11
/product="Electron transfer flavoprotein subunit
alpha/beta"
/protein_id="YP_001958874.1"
/db_xref="GI:189499404"
/db_xref="InterPro:IPR000049"
/db_xref="InterPro:IPR014730"
/db_xref="GeneID:6374093"
/translation="MEIAVCINRVPDTGSRVDVQDGAVNVSALNMVLNAYDEYAIEES
VRLKERFSGVTVTAFSLGTKENYDILRKALAMGVDKACLIEGGNDDDSYVVAASLSRA
IREYYSVLPDLVFCGRESSDFNRAQVPLMVAEMLGVAAISAVTFLEIRGSNVTVTRET
EGGIEEYILQLPAVISAEKGLNVPRKTSIKAVMKARKEPIVHVDGHTDELPRIEYGEF
SMVNRKRNCRFIDIVEDLVPALLEKGVV"
misc_feature 454248..454844
/locus_tag="Cphamn1_0429"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:238847"
misc_feature order(454260..454265,454344..454346,454353..454355,
454425..454427,454590..454595,454599..454604,
454617..454628)
/locus_tag="Cphamn1_0429"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:238847"
misc_feature 454332..454796
/locus_tag="Cphamn1_0429"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:216243"
gene 454986..455966
/locus_tag="Cphamn1_0430"
/db_xref="GeneID:6374094"
CDS 454986..455966
/locus_tag="Cphamn1_0430"
/note="PFAM: Electron transfer flavoprotein
alpha/beta-subunit ; Electron transfer flavoprotein alpha
subunit;
KEGG: pvi:Cvib_1535 electron transfer flavoprotein, alpha
subunit"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit alpha"
/protein_id="YP_001958875.1"
/db_xref="GI:189499405"
/db_xref="InterPro:IPR014730"
/db_xref="InterPro:IPR014731"
/db_xref="GeneID:6374094"
/translation="MTYFVLLEQRNATLSEVSLDVWNAVQHLAADAGCAEIYGVVIGD
IDDGVVSSLCYGNGQVYVLRDKAFDRYAPSVYAQAIAELAAETGAEHVFLAATARVRD
LAPRIAMRLGAALVSDCALKADDQGFPKATTALYAGSVRAVAHVRTEIAVYTLGAQAN
RSARISSSPVEVRNADAFCPEFSGWNPLLEEVRYFTARRDISESDIIVAGGRGVGGRD
NFVLLESLAEALGGVVGASRSAVDEGWRPHADQIGQTGKSVAPKLYIACGISGAVQHL
AGISGAGIVVAINRDREAPIFSAADYGVVGTIEEVVPRLDSAVRSFQRLK"
misc_feature 454986..455948
/locus_tag="Cphamn1_0430"
/note="Electron transfer flavoprotein, alpha subunit
[Energy production and conversion]; Region: FixB; COG2025"
/db_xref="CDD:224936"
misc_feature 454995..455513
/locus_tag="Cphamn1_0430"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:238848"
misc_feature 455583..455831
/locus_tag="Cphamn1_0430"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene 456165..456761
/locus_tag="Cphamn1_0431"
/db_xref="GeneID:6374095"
CDS 456165..456761
/locus_tag="Cphamn1_0431"
/note="PFAM: UvrB/UvrC protein; protein of unknown
function DUF151;
KEGG: plt:Plut_1753 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958876.1"
/db_xref="GI:189499406"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR003729"
/db_xref="GeneID:6374095"
/translation="MEKLRVDILGLSTSPHTNGAYALILYEVEGKRKLPIIIGGFEAQ
AIALKLENIKPPRPFTHDLFKTVADTFNLSVQEVFIDELHNETFYAKVICEMQGEIHE
IDARPSDAIAIAVRFGAPIFVSEDILNEAGILEEQQEDNTVEAQEKAGEEVSSEIIGS
ATSSLNDLQKMLEDAVNREDYEEAARLRDKISRFKESS"
misc_feature 456180..456581
/locus_tag="Cphamn1_0431"
/note="Bifunctional nuclease; Region: DNase-RNase;
pfam02577"
/db_xref="CDD:217117"
misc_feature 456648..456752
/locus_tag="Cphamn1_0431"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene complement(456852..457547)
/locus_tag="Cphamn1_0432"
/db_xref="GeneID:6374096"
CDS complement(456852..457547)
/locus_tag="Cphamn1_0432"
/note="KEGG: pvi:Cvib_1533 porin, opacity type"
/codon_start=1
/transl_table=11
/product="porin, opacity type"
/protein_id="YP_001958877.1"
/db_xref="GI:189499407"
/db_xref="GeneID:6374096"
/translation="MNNTEVEDIIGYTEYTGIEAELGFGSGLTLLGALGCDYGDYRVE
GELGYQNNNVDALDIYIPCCNTEDNAVINVDLDGDITVLSLLMNGYYDIDLGGGVELS
PTVGVGLAQVSMGDVTITGISEDYSNCCNGDNNGGDIIIVPDDPPFDDEITEVKESPQ
ERQMRAGDDLNLDVHEVTFAYQAGIGLGIPVAENIMLDARYRYFATTDFTVLVANTNI
ESHNALLGLRVMF"
misc_feature complement(<457206..>457484)
/locus_tag="Cphamn1_0432"
/note="Surface antigen; Region: Surface_Ag_2; pfam01617"
/db_xref="CDD:216607"
misc_feature complement(456855..>457013)
/locus_tag="Cphamn1_0432"
/note="Outer membrane protein beta-barrel domain; Region:
OMP_b-brl; cl17254"
/db_xref="CDD:247808"
gene complement(457850..458539)
/locus_tag="Cphamn1_0433"
/db_xref="GeneID:6374097"
CDS complement(457850..458539)
/locus_tag="Cphamn1_0433"
/note="KEGG: plt:Plut_1752 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958878.1"
/db_xref="GI:189499408"
/db_xref="GeneID:6374097"
/translation="MKKVLSLLMVFMVTVAFTATGYSAEKYVSGNIGISWMNDSEIND
IIGLTEAYDVDLDLGFSSGLTLLGAFGCDYGSYRLEGELGYQGNDVKSLGVTIPDYYG
QNEDLSESVDLQGDITVLSLLVNGYYDIDLGGVELSPTVGVGVAQVSIDNVTGDMEEI
NEVEMDEIGLDISETTFAYQAGIGLGIPVADNIMLDARYRYFATTDFMMLLVNTNVTS
HSALLGLRVGF"
misc_feature complement(457853..458539)
/locus_tag="Cphamn1_0433"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:226163"
sig_peptide complement(458468..458539)
/locus_tag="Cphamn1_0433"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.467 at
residue 24"
gene complement(458690..461155)
/locus_tag="Cphamn1_0434"
/db_xref="GeneID:6374098"
CDS complement(458690..461155)
/locus_tag="Cphamn1_0434"
/note="TIGRFAM: outer membrane protein assembly complex,
YaeT protein;
PFAM: surface antigen (D15); surface antigen variable
number repeat protein;
KEGG: cte:CT0266 bacterial surface antigen family protein"
/codon_start=1
/transl_table=11
/product="outer membrane protein assembly complex, YaeT
protein"
/protein_id="YP_001958879.1"
/db_xref="GI:189499409"
/db_xref="InterPro:IPR000184"
/db_xref="InterPro:IPR010827"
/db_xref="InterPro:IPR016474"
/db_xref="GeneID:6374098"
/translation="MSTSMKQLHSFRLHTLSSCILLITAMLFAYPASAADPVAKNKAN
QYTVSGISFSGLQTISENELLNSLPVRKGDTITIPGADIPRTIEYLWKQRKFSDIQAN
QNISGTTVNLQLIVKELPLLDRVVFDGNDKFDDKELNNIASLYAGRHVDEQSLLTAAS
KIRTAYTKKGYLRAEVEYTLKQLQNNRVSARFSIDEKSKVVIENITFHGNTAFKDGKL
RGVFKETSQNAWWKTIFGQPKLDVEKFNADKKLLVEFYRENGYRDMSIVKDSISYTND
LKGVNIDLYIDEGAVYYVRNVTWNGNSKNFATTDILNSVFSIKKGDRYNSKKIQEKLN
FSKDNRDVASLYLDRGYLSFRSSLDEQVIPPDSVDLNISLREGEPFRIGKINIRGNTK
TKDHVIRRELRTVPGNTFSRKDVVRSVREISMLNYFDPETTRPDIQPDEASKTVDITY
NVTEKQTDTFNASVGYSGNVGFTGALGVTFNNFSLQDLFNGEAWDPLPHGDGQKLSLQ
WQFGNEDYRTLSMSFTEPWAFGTPTVLGFSVFKTQRNYTDDGDSDNLLKQTGASLNIG
RRLTWPDDYFTINWKLKYLHSEGELLSFVDSDNQPDTADEISITQTITRNSIDNPIYP
RRGSKNSVSAQLAGGPLPGSVDFYKFIGSSSWYVPLGGDFVLNLATEHGYLNTFSEDD
YIPYTDSFYMGGSGLSSLSTIPLRGYDDRSLGVLNEDTDLYTGRVYSKFTTEVRYPLT
LSPTASVYALAFFEAGNLWGSTDTINYSDLKKSAGLGLRLYLPIIGLIGLDYGYGFDP
VDSNPGEDNQGWKFIFSFGQFAQ"
sig_peptide complement(461051..461155)
/locus_tag="Cphamn1_0434"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.983 at
residue 35"
misc_feature complement(458699..461020)
/locus_tag="Cphamn1_0434"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:234165"
misc_feature complement(460802..461020)
/locus_tag="Cphamn1_0434"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(460565..460798)
/locus_tag="Cphamn1_0434"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(460289..460558)
/locus_tag="Cphamn1_0434"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(460025..460282)
/locus_tag="Cphamn1_0434"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(459791..460018)
/locus_tag="Cphamn1_0434"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:219346"
misc_feature complement(458699..459658)
/locus_tag="Cphamn1_0434"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:216300"
gene complement(461162..461992)
/locus_tag="Cphamn1_0435"
/db_xref="GeneID:6374099"
CDS complement(461162..461992)
/locus_tag="Cphamn1_0435"
/EC_number="2.5.1.31"
/note="KEGG: pvi:Cvib_1531 undecaprenyl pyrophosphate
synthetase;
TIGRFAM: undecaprenyl diphosphate synthase;
PFAM: Di-trans-poly-cis-decaprenylcistransferase"
/codon_start=1
/transl_table=11
/product="undecaprenyl diphosphate synthase"
/protein_id="YP_001958880.1"
/db_xref="GI:189499410"
/db_xref="InterPro:IPR001441"
/db_xref="GeneID:6374099"
/translation="MDFSAAFTSRWFHPAIDPQDEQTRIELKAGCYLPEHVAIIMDGN
GRWARQKGKTRIEGHAAGVEAVRDVVEACAQLGIGYLTLFTFSTENWKRPEKEISSLM
QLLVKVLQKEARALFRNKVRIHVIGNIEQLPQKVKQTLKDTVELTKDNTGLTLCIALS
YSGKWDILQACRAISREIAEGRISPDKIDEQLMDSFLSTRGIPEPELLIRTSGEFRIS
NFLLWQSAYSEIYFTNTYWPDFRRGQLYDAIRDFQKRERRFGQTSEQLQDKNALQSRL
"
misc_feature complement(461231..461893)
/locus_tag="Cphamn1_0435"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cd00475"
/db_xref="CDD:238265"
misc_feature complement(461210..461875)
/locus_tag="Cphamn1_0435"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:216392"
misc_feature complement(461867..461869)
/locus_tag="Cphamn1_0435"
/note="catalytic residue [active]"
/db_xref="CDD:238265"
misc_feature complement(461855..461866)
/locus_tag="Cphamn1_0435"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:238265"
misc_feature complement(order(461522..461524,461528..461530,
461573..461575,461594..461596,461675..461683,
461687..461692,461732..461746))
/locus_tag="Cphamn1_0435"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:238265"
misc_feature complement(order(461303..461305,461315..461317,
461324..461326,461336..461338,461345..461350,
461429..461431,461456..461458,461465..461467,
461477..461479,461501..461503))
/locus_tag="Cphamn1_0435"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238265"
misc_feature complement(order(461345..461347,461363..461365))
/locus_tag="Cphamn1_0435"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:238265"
gene 462202..463635
/gene="gatA"
/locus_tag="Cphamn1_0436"
/db_xref="GeneID:6374100"
CDS 462202..463635
/gene="gatA"
/locus_tag="Cphamn1_0436"
/EC_number="3.5.1.4"
/note="allows the formation of correctly charged
Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
which lack either or both of asparaginyl-tRNA or
glutaminyl-tRNA synthetases; reaction takes place in the
presence of glutamine and ATP through an activated
phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_001958881.1"
/db_xref="GI:189499411"
/db_xref="InterPro:IPR000120"
/db_xref="InterPro:IPR004412"
/db_xref="GeneID:6374100"
/translation="MYFSSYQNLRKRLLSREISCETVVLDYLERIRKNHERNVYITVF
NDQALQRAKELDRKLEAGEQPGRLFGLPMAVKDNLSVKDASLTCASKILEGYTAVYNA
TAVERLLKEDAVFLGKVNMDEFAMGSSNENSAFGPVPNPYDDSRVPGGSSGGSAAAVA
GDLAMVALGSDTGGSVRQPAGFCNVVGLKPTYGRISRYGLVAFGSSFDQIGILSRNCD
DAALVLGVIAGKDAADTTSSQHVVPDYLSEMGSVSLKGMKIGVPEEYFPETLDPGVAL
AVRNRLEELRDAGAELVDIALPESDHAIAAYYILTTAEASSNLARFDGARYGYRSGDA
SDLSGMYVNSRSEGFGGEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFLDRYKEALA
KVDVIAGPTSPFPPFGIGDKMDEPLEMYLADVFTVPASIAGLPALSVPAGFDRSGLPV
GLQLIGDFFDEGKLLGIAREIQRSQEE"
misc_feature 462202..463620
/gene="gatA"
/locus_tag="Cphamn1_0436"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:223232"
misc_feature 462238..463617
/gene="gatA"
/locus_tag="Cphamn1_0436"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:234572"
gene 463710..464657
/locus_tag="Cphamn1_0437"
/db_xref="GeneID:6374101"
CDS 463710..464657
/locus_tag="Cphamn1_0437"
/note="TIGRFAM: succinyl-CoA synthetase, alpha subunit;
PFAM: CoA-binding domain protein; ATP-citrate
lyase/succinyl-CoA ligase;
KEGG: pvi:Cvib_1529 succinyl-CoA synthetase (ADP-forming)
alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase subunit alpha"
/protein_id="YP_001958882.1"
/db_xref="GI:189499412"
/db_xref="InterPro:IPR003781"
/db_xref="InterPro:IPR005810"
/db_xref="InterPro:IPR005811"
/db_xref="InterPro:IPR017440"
/db_xref="GeneID:6374101"
/translation="MQQINNFVNSNTDNSMSVLVNKDTRLVVQGITGGEGTFHTSQIL
EYGTNVVAGVTPGKGGLEYTGNDRDTFLRPVPVFNTVKDAVVVAGANTSVIFVPAPFA
ADAIMEAAEAGLKVIICITEGIPVNDMMKAYRYVQEKGAVLVGPNCPGVITPGEAKVG
IMPGFIHKKGSIGVVSRSGTLTYEAVHQLTEVGLGQSTCIGIGGDPVIGTRFLDAIKL
FAKDDETEGLVMIGEIGGSAEEEASEYIKKHFKKPVVGFIAGRTAPPGRRMGHAGAIV
SGGKGTAEDKIRAMEKAGIHVVENPADIGDTMLKALGKA"
misc_feature 463755..464654
/locus_tag="Cphamn1_0437"
/note="succinyl-CoA synthetase subunit alpha; Validated;
Region: PRK05678"
/db_xref="CDD:180194"
misc_feature 463764..464081
/locus_tag="Cphamn1_0437"
/note="CoA binding domain; Region: CoA_binding;
smart00881"
/db_xref="CDD:214881"
misc_feature 464232..464594
/locus_tag="Cphamn1_0437"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:215988"
gene complement(464905..465885)
/locus_tag="Cphamn1_0438"
/db_xref="GeneID:6374102"
CDS complement(464905..465885)
/locus_tag="Cphamn1_0438"
/EC_number="5.3.1.13"
/note="KEGG: pvi:Cvib_1528 KpsF/GutQ family protein;
TIGRFAM: KpsF/GutQ family protein;
PFAM: CBS domain containing protein; sugar isomerase
(SIS)"
/codon_start=1
/transl_table=11
/product="KpsF/GutQ family protein"
/protein_id="YP_001958883.1"
/db_xref="GI:189499413"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001347"
/db_xref="InterPro:IPR004800"
/db_xref="GeneID:6374102"
/translation="MALSLDRQGILATGKSIILKEAASLSRIAGLLDRNFHASVELLC
ACRGKAIISGMGKSGIIGQKIAATLSSTGTTALFMHPADAAHGDLGVVSEDDVVICLS
KSGMTEELNFILPALRKIGVSIIAFTGNKRSYLAENADIVLDVSVEEEACPFDLAPTT
STTAMLAMGDALAICLMQEKQFTHRDFAVTHPKGSLGRRLTMKVSDIMATGEALPLVE
ETVPLTDLILEMTSKRFGMSGIVDHSGKLSGIFTDGDLRRIIQCRSDILSLQAKDVMT
KGPKTVSADTMAEECLKILESHRITQLLVCEDDNRPVGLIHIHDLISLGL"
misc_feature complement(464908..465846)
/locus_tag="Cphamn1_0438"
/note="D-arabinose 5-phosphate isomerase; Provisional;
Region: PRK10892"
/db_xref="CDD:182814"
misc_feature complement(465361..>465654)
/locus_tag="Cphamn1_0438"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:240145"
misc_feature complement(465580..465582)
/locus_tag="Cphamn1_0438"
/note="putative active site [active]"
/db_xref="CDD:240145"
misc_feature complement(464920..465255)
/locus_tag="Cphamn1_0438"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:239977"
gene 466218..466565
/locus_tag="Cphamn1_0439"
/db_xref="GeneID:6374103"
CDS 466218..466565
/locus_tag="Cphamn1_0439"
/note="KEGG: cte:CT0272 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958884.1"
/db_xref="GI:189499414"
/db_xref="GeneID:6374103"
/translation="MSWLIIMAFALPIFFGLIFVMTKFIKYMQEEQNIEIESFRDSLI
DDQNPVGLSGDDLEKLKQQQAEAQKHLREVISKIPIEEKDGRLRPAFDKMKKTQDEAS
EKTAGNGKDSENK"
misc_feature 466218..>466286
/locus_tag="Cphamn1_0439"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK12663"
/db_xref="CDD:237163"
gene 466596..468101
/locus_tag="Cphamn1_0440"
/db_xref="GeneID:6374104"
CDS 466596..468101
/locus_tag="Cphamn1_0440"
/note="PFAM: polysaccharide biosynthesis protein;
KEGG: pvi:Cvib_1526 polysaccharide biosynthesis protein"
/codon_start=1
/transl_table=11
/product="polysaccharide biosynthesis protein"
/protein_id="YP_001958885.1"
/db_xref="GI:189499415"
/db_xref="InterPro:IPR002797"
/db_xref="GeneID:6374104"
/translation="MLDKLKLLAKDTVIYGSSTILARGLNYVLVPLYANLLTTFDNGV
HALIYANIALANVLFAYGMETSYLKVASDNTRSGGDSARCFSTAFISLLLTSTVFTAA
ILFFAPGIAELIGLSENQKDFIRYAAVILWLDALLVIPFADLRLKRKAIRFAIARILG
VVTIVISAFTLIVQFKTGLHGAFLANIAGSLVSLLFVLPVFGQFQRFFSSDTLREMLR
IGLPYVPTGIAGLLIHLIDRNILIRMRPEDIENIYGAGYVQSDIVGIYGRVAAFGILI
QLFIQVFRFAWQPFFLQHADDPEAKKLFRHVLSISTVFAMVIALVSTFYVPDLIRYHY
FERLYILPPAYWVGLSILPWIFFSYIFDMISTNLTAGILITGSTRYLPVVTFAGAGVT
TVTCLLLVPSLGMEGAAISILAGTVVMSICMGFFSLKVYPNSYEWSKLLLLLVTGIVF
SRLPGLAGMELIWFEALLTLVYLGFIAVVFRNEADYVFRLLRTKMDGRGDE"
misc_feature 466596..468035
/locus_tag="Cphamn1_0440"
/note="Membrane protein involved in the export of
O-antigen and teichoic acid [General function prediction
only]; Region: RfbX; COG2244"
/db_xref="CDD:225153"
misc_feature 466617..467873
/locus_tag="Cphamn1_0440"
/note="Multidrug and toxic compound extrusion family and
similar proteins; Region: MATE_like; cl09326"
/db_xref="CDD:245055"
gene complement(468329..468994)
/locus_tag="Cphamn1_0441"
/db_xref="GeneID:6374105"
CDS complement(468329..468994)
/locus_tag="Cphamn1_0441"
/note="KEGG: pvi:Cvib_1525 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958886.1"
/db_xref="GI:189499416"
/db_xref="GeneID:6374105"
/translation="MKPFSWRAFISLGLFVSFLMLIVSGIVLYLAPPGRVANWTDWQL
LGLSKQAWQNQHTIFSFTFALLSIFHLFSINWKAFWSYIAAKTHAGLGKPFEIFSILL
LAMFFGIGTFMQIQPFSAVIDFGKSLSESWEEPQSQPPIPHTERMTLKEISDQFASGE
SPESLRGKLEKEGIRVTSLDQTLENIGSENNTSAQKVYELLDIAPPSQNPGRGNGQGR
NRP"
sig_peptide complement(468881..468994)
/locus_tag="Cphamn1_0441"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.969) with cleavage site probability 0.404 at
residue 38"
misc_feature complement(468767..468979)
/locus_tag="Cphamn1_0441"
/note="Domain of unknown function (DUF4405); Region:
DUF4405; pfam14358"
/db_xref="CDD:222708"
gene complement(468991..469581)
/locus_tag="Cphamn1_0442"
/db_xref="GeneID:6374106"
CDS complement(468991..469581)
/locus_tag="Cphamn1_0442"
/note="KEGG: pvi:Cvib_1524 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958887.1"
/db_xref="GI:189499417"
/db_xref="GeneID:6374106"
/translation="MDFLSSKRFISIVLAILVVLNLVLLGTLLWQNTHSSQKQGRDTV
NHKYRNKQSFFQKELQLTEEQSEQFNELRRQHFQGTLPALVAISGLKRQLIQEALKVE
PDTLSMKTLAGKIGRQQAIVEYRLAWHFNSLSRVCTPEQRDSLQRVLEKVTAKPFKLK
RRLLLRRIEFSPLQQDSSEKRGMRTKEPAQQSTQQQ"
sig_peptide complement(469474..469581)
/locus_tag="Cphamn1_0442"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.624) with cleavage site probability 0.296 at
residue 36"
misc_feature complement(469153..>469407)
/locus_tag="Cphamn1_0442"
/note="Heavy-metal resistance; Region: Metal_resist;
pfam13801"
/db_xref="CDD:222389"
gene complement(469681..470034)
/locus_tag="Cphamn1_0443"
/db_xref="GeneID:6374107"
CDS complement(469681..470034)
/locus_tag="Cphamn1_0443"
/note="KEGG: cte:CT0277 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958888.1"
/db_xref="GI:189499418"
/db_xref="GeneID:6374107"
/translation="MHTNDHIKTEVRETLALLDTLPELEPHYLFRARLFERIEHETAG
AYHERHTTAGGLKFALMAFLFVINIGSVFVLMQSNTNEQMLSKQEVIQSLTNEYNSPA
LSYYFDNDSVEDKND"
gene complement(470172..470810)
/locus_tag="Cphamn1_0444"
/db_xref="GeneID:6374108"
CDS complement(470172..470810)
/locus_tag="Cphamn1_0444"
/note="TIGRFAM: RNA polymerase sigma factor, sigma-70
family;
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4
domain protein; Sigma-70 region 4 type 2;
KEGG: cte:CT0278 RNA polymerase sigma-70 factor, ECF
subfamily"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-24 subunit"
/protein_id="YP_001958889.1"
/db_xref="GI:189499419"
/db_xref="InterPro:IPR000838"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR013249"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:6374108"
/translation="MMFSGILMLRACESSNISLEQVNQQRLKRNGHSIQEDDFSTIVA
EHQDMVLNTCFRFVLNREDAEDIAQEVFIEAYRSLENFRKESKLSTWLYRIAVTKSLD
HLRKKKRKKRFSSLKRVIGLHDPTEELALPSSTATPEEVLSGNERTEILQDALSSLPD
NQKTAFLLSKYDGYSNQEIADIMQTTVSAVESLVHRAKKSLQNKLEKHYKKQ"
misc_feature complement(470193..470705)
/locus_tag="Cphamn1_0444"
/note="RNA polymerase sigma factor RpoE; Provisional;
Region: PRK09652"
/db_xref="CDD:236608"
misc_feature complement(<470523..470687)
/locus_tag="Cphamn1_0444"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:218138"
misc_feature complement(470205..470366)
/locus_tag="Cphamn1_0444"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(470217..470219,470223..470228,
470232..470240,470244..470249,470253..470255,
470283..470288,470304..470306,470334..470336))
/locus_tag="Cphamn1_0444"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(470944..471702)
/locus_tag="Cphamn1_0445"
/db_xref="GeneID:6374109"
CDS complement(470944..471702)
/locus_tag="Cphamn1_0445"
/note="PFAM: Methyltransferase type 11; Methyltransferase
type 12;
KEGG: gsu:GSU2792 hypothetical protein"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_001958890.1"
/db_xref="GI:189499420"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:6374109"
/translation="MKNAFKDRFSHQAAEYSLYRPHYPEALFSYLVSLVPERDTAWDC
ATGNGQSAVSLAEKFRQVYATDASKRQIAHAIRKPNILYSVSPAEKTSLPDRSVDLVT
VAQAIHWFDTESFYREVRRVLKNNGIFAAWGYHLPLIEPEIDRIIHQLYSVTLGKFWE
KEIRHIQSEYRTLLFPFPELSHPSFSITTAWSFHQVIGYLETWSALNVCRKKQKKNPL
DTILPELRMQWKNPEEIKKAEWPIMLKVALPTES"
misc_feature complement(471196..471585)
/locus_tag="Cphamn1_0445"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:222415"
misc_feature complement(471295..471585)
/locus_tag="Cphamn1_0445"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(471391..471393,471439..471447,
471502..471507,471553..471573))
/locus_tag="Cphamn1_0445"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(471709..472155)
/locus_tag="Cphamn1_0446"
/db_xref="GeneID:6374110"
CDS complement(471709..472155)
/locus_tag="Cphamn1_0446"
/note="PFAM: thiol-disulphide oxidoreductase DCC;
KEGG: bsu:BSU31500 hypothetical protein"
/codon_start=1
/transl_table=11
/product="thiol-disulfide oxidoreductase DCC"
/protein_id="YP_001958891.1"
/db_xref="GI:189499421"
/db_xref="InterPro:IPR007263"
/db_xref="GeneID:6374110"
/translation="MKHHALPERIVIFDGVCNLCEFSVNFIYQRDVEGKFTFTPAQST
LGSKLLEHYQINTGTLDTVVLVKHNRIYTRSTAALEIASELDIPWNFLQVLSLIPQPV
RDQIYDVIAWNRYAWFGKKESCMIPTPEIKSRFLEQLPSPDSIVQP"
misc_feature complement(471748..472155)
/locus_tag="Cphamn1_0446"
/note="Predicted thiol-disulfide oxidoreductase [General
function prediction only]; Region: COG3011"
/db_xref="CDD:225556"
gene complement(472173..473555)
/locus_tag="Cphamn1_0447"
/db_xref="GeneID:6374111"
CDS complement(472173..473555)
/locus_tag="Cphamn1_0447"
/EC_number="5.4.2.2"
/note="PFAM: phosphoglucomutase/phosphomannomutase ;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain I; phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain II;
phosphoglucomutase/phosphomannomutase alpha/beta/alpha
domain III;
KEGG: cte:CT0279 phosphoglucomutase/phosphomannomutase
family protein"
/codon_start=1
/transl_table=11
/product="Phosphoglucomutase"
/protein_id="YP_001958892.1"
/db_xref="GI:189499422"
/db_xref="InterPro:IPR005841"
/db_xref="InterPro:IPR005843"
/db_xref="InterPro:IPR005844"
/db_xref="InterPro:IPR005845"
/db_xref="InterPro:IPR005846"
/db_xref="InterPro:IPR016066"
/db_xref="GeneID:6374111"
/translation="MQVKFGTDGWRAIIADEYTFDNLKLASLATADYFLDLPEALNGV
CVGYDTRFMSPEFARYTAEVLSSRGLRVFLSDSFAPTPAVSLFSRDKQLAGGIVITAS
HNPPHYNGFKIKASYGGSALPESISVIEKNLNETDPGTTIEPDESLIETADIKGYYLQ
YLLSHIDLDTIRKSHLHIAHNAMFGSGQHIMDSILGTTQVDCYHCRLNPGFDGINPEP
IPRYIRNFMTFCKKTKPAAGIINDGDADRICMLDENADYIDSHKIFAIVLKYLVEDKR
KTGEVAKTFALTDVIDKICRKHNLTLHLLPVGFKHVSKLMTTRDILIGGEESGGIGIT
SYLPERDGIYIGLLILEIMAKKKKTLSGLVQELFDEYGSFYYNRIDLPIDEEKKQSLI
AKASRGDLERIATYRVTGFNALDGFKYHFEGGWLLIRLSGTEPVLRLYCEADSPEKVD
EALDYAMALG"
misc_feature complement(472179..473555)
/locus_tag="Cphamn1_0447"
/note="Phosphomannomutase [Carbohydrate transport and
metabolism]; Region: {ManB}; COG1109"
/db_xref="CDD:224034"
misc_feature complement(472179..473549)
/locus_tag="Cphamn1_0447"
/note="This PGM-like (phosphoglucomutase-like) protein of
unknown function belongs to the alpha-D-phosphohexomutase
superfamily and is found in both archaea and bacteria. The
alpha-D-phosphohexomutases include several related enzymes
that catalyze a reversible...; Region: PGM_like2; cd05800"
/db_xref="CDD:100093"
misc_feature complement(order(472242..472244,472257..472265,
472269..472271,472566..472568,472572..472574,
472578..472580,472629..472637,472698..472700,
472815..472820,472824..472826,472830..472832,
473220..473222,473244..473252,473523..473525,
473532..473534,473538..473540))
/locus_tag="Cphamn1_0447"
/note="active site"
/db_xref="CDD:100093"
misc_feature complement(order(472242..472244,472257..472265,
472269..472271,472566..472568,472572..472574,
472578..472580,472629..472631,472635..472637,
472698..472700,472815..472817,473250..473252,
473532..473534))
/locus_tag="Cphamn1_0447"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100093"
misc_feature complement(order(472818..472820,472824..472826,
472830..472832,473250..473252))
/locus_tag="Cphamn1_0447"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100093"
gene 473675..474826
/locus_tag="Cphamn1_0448"
/db_xref="GeneID:6374112"
CDS 473675..474826
/locus_tag="Cphamn1_0448"
/EC_number="2.4.1.182"
/note="KEGG: plt:Plut_1739 glycosyl transferase, family
19;
TIGRFAM: lipid-A-disaccharide synthase;
PFAM: glycosyl transferase family 19"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_001958893.1"
/db_xref="GI:189499423"
/db_xref="InterPro:IPR003835"
/db_xref="GeneID:6374112"
/translation="MREKKLFVLAGEVSGDLHASEVIEVVQTRCPAIRVFGAGGRKLR
DLGADLLYDVDDLSVMGFFEVAGKGFFLRKVIRDLKRAIAARKPDAALLVDYPGMNMV
LARYLHQHDIPVIYYISPKVWAWKESRIAKIKAYVDRLMVIFDFEVDFYKMHGVEAEF
AGNPVVEEISRLEFRSKSDFLSDHRIQENRKIIGLLPGSRKQEIALVFPEMLRAAGML
QQQYDAAFLLGRAPHVNHRLYDSIAGRAGVELVDCSAYEAMHYSDLVLVTSGTATLEA
LCFGVPMIVLYKTGWLNYAIGKRLVRLHSFSLANLVAKGLDEKSQVVTELLQSAVTAD
RIYEESTVLLDDRDVSEVMRQNLLCAREKLGTVRPSETVASAVCSYLNG"
misc_feature 473684..474805
/locus_tag="Cphamn1_0448"
/note="Lipid A disaccharide synthetase [Cell envelope
biogenesis, outer membrane]; Region: LpxB; COG0763"
/db_xref="CDD:223834"
misc_feature 473684..474691
/locus_tag="Cphamn1_0448"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:237606"
gene 474886..475149
/locus_tag="Cphamn1_0449"
/db_xref="GeneID:6374113"
CDS 474886..475149
/locus_tag="Cphamn1_0449"
/note="KEGG: cch:Cag_0476 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958894.1"
/db_xref="GI:189499424"
/db_xref="GeneID:6374113"
/translation="MEQFVTLLVENPLYLIIAVILSIAVLLLFLKKLLKLIVFVTALF
ILYLGYLYFIGENIPEVVHGVQQIVDSLLEKGADYVKELGGGD"
gene 475150..475269
/locus_tag="Cphamn1_0450"
/db_xref="GeneID:6374114"
CDS 475150..475269
/locus_tag="Cphamn1_0450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_001958895.1"
/db_xref="GI:189499425"
/db_xref="GeneID:6374114"
/translation="MPVIFRQNPYLALFIQVFFCSFVPMRYVVNEITNQQVTQ"
gene 475266..476081
/locus_tag="Cphamn1_0451"
/db_xref="GeneID:6374115"
CDS 475266..476081
/locus_tag="Cphamn1_0451"
/note="TIGRFAM: molybdenum ABC transporter, periplasmic
molybdate-binding protein;
KEGG: abu:Abu_0012 molybdenum ABC transporter, periplasmic
molybdate-binding protein"
/codon_start=1
/transl_table=11
/product="moly 