LOCUS NC_011149 4798660 bp DNA circular BCT 13-FEB-2013
DEFINITION Salmonella enterica subsp. enterica serovar Agona str. SL483
chromosome, complete genome.
ACCESSION NC_011149
VERSION NC_011149.1 GI:197247352
DBLINK Project: 59431
BioProject: PRJNA59431
KEYWORDS .
SOURCE Salmonella enterica subsp. enterica serovar Agona str. SL483
ORGANISM Salmonella enterica subsp. enterica serovar Agona str. SL483
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4798660)
AUTHORS Fricke,W.F., Mammel,M.K., McDermott,P.F., Tartera,C., White,D.G.,
Leclerc,J.E., Ravel,J. and Cebula,T.A.
TITLE Comparative genomics of 28 Salmonella enterica isolates: evidence
for CRISPR-mediated adaptive sublineage evolution
JOURNAL J. Bacteriol. 193 (14), 3556-3568 (2011)
PUBMED 21602358
REFERENCE 2 (bases 1 to 4798660)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2008) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4798660)
AUTHORS Ravel,J., Fricke,W.F., White,D., McDermott,P., Mammel,M.,
Rosovitz,M., Leclerc,J., Cebula,T. and Sebastian,Y.
TITLE Direct Submission
JOURNAL Submitted (19-AUG-2008) J. Craig Venter Institute, 9704 Medical
Center Drive, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP001138.
The sequenced strain has been deposited at the Salmonella Genetic
Stock Center at the University of Calgary under the care of Dr.
K.E. Sanderson.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4798660
/organism="Salmonella enterica subsp. enterica serovar
Agona str. SL483"
/mol_type="genomic DNA"
/strain="SL483"
/serovar="Agona"
/sub_species="enterica"
/db_xref="taxon:454166"
misc_feature 184..311
/note="Threonine operon leader"
gene 337..2799
/gene="thrA"
/locus_tag="SeAg_B0002"
/db_xref="GeneID:6795916"
CDS 337..2799
/gene="thrA"
/locus_tag="SeAg_B0002"
/EC_number="1.1.1.3"
/EC_number="2.7.2.4"
/note="multifunctional homotetrameric enzyme that
catalyzes the phosphorylation of aspartate to form
aspartyl-4-phosphate as well as conversion of aspartate
semialdehyde to homoserine; functions in a number of amino
acid biosynthetic pathways"
/codon_start=1
/transl_table=11
/product="bifunctional aspartokinase I/homoserine
dehydrogenase I"
/protein_id="YP_002144980.1"
/db_xref="GI:197250740"
/db_xref="GeneID:6795916"
/translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
NHLVAMIEKTIGGQDALPNISDAERIFSDLLAGLASAQPGFPLARLKMVVEQEFAQIK
HVLHGISLLGQCPNSINAALICRGEKMSIAIMAGLLEARGHRVTVIDPVEKLLAVGHY
LESTVDIAESTRRIAASQIPADHMILMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL
RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
QIPCLIKNTGNPQAPGTLIGASSDDDNLPVKGISNLNNMAMFSVSGPGMKGMIGMAAR
VFAAMSRAGISVVLITQSSSEYSISFCVPQSDCARARRAMQDEFYLELKEGLLEPLAV
TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQTWLKNKHIDLRVCGVANSKA
LLTNVHGLNLDNWQAELAQANAPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
FLREGFHVVTPNKKANTSSMDYYHQLRFAAAQSRRKFLYDTNVGAGLPVIENLQNLLN
AGDELQKFSGILSGSLSFIFGKLEEGMSLSQATALAREMGYTEPDPRDDLSGMDVARK
LLILARETGRELELSDIVIEPVLPDEFDASGDVTAFMAHLPQLDDAFAARVAKARDEG
KVLRYVGNIEEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
NDVTAAGVFADLLRTLSWKLGV"
misc_feature 337..2796
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional; Region: thrA; PRK09436"
/db_xref="CDD:181856"
misc_feature 337..1224
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK),
AK-HSDH; this CD includes the N-terminal catalytic domain
of aspartokinase (AK) of the bifunctional enzyme AK -
homoserine dehydrogenase (HSDH). These aspartokinases are
found in bacteria (E. coli...; Region: AAK_AK-HSDH;
cd04257"
/db_xref="CDD:58623"
misc_feature order(349..351,466..468,715..717,958..960,1093..1095,
1132..1134)
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="putative catalytic residues [active]"
/db_xref="CDD:58623"
misc_feature order(349..351,355..363,1018..1023,1030..1035)
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58623"
misc_feature order(448..453,466..468,715..717)
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:58623"
misc_feature 1279..1518
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="ACT domains of the bifunctional enzyme
aspartokinase (AK) - homoserine dehydrogenase (HSDH);
Region: ACT_AKi-HSDH-ThrA-like_1; cd04921"
/db_xref="CDD:153193"
misc_feature order(1303..1311,1318..1323,1333..1335,1342..1347,
1366..1368,1372..1392,1396..1401,1405..1407,1411..1413)
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153193"
misc_feature 1387..1389
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="putative threonine allosteric regulatory site;
other site"
/db_xref="CDD:153193"
misc_feature 1522..1719
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="ACT domains of the bifunctional enzyme
aspartokinase (AK) - homoserine dehydrogenase (HSDH);
Region: ACT_AKi-HSDH-ThrA_2; cd04922"
/db_xref="CDD:153194"
misc_feature 1630..1632
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="putative threonine allosteric regulatory site;
other site"
/db_xref="CDD:153194"
misc_feature 1771..2151
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="Homoserine dehydrogenase, NAD binding domain;
Region: NAD_binding_3; pfam03447"
/db_xref="CDD:202636"
misc_feature 2176..2766
/gene="thrA"
/locus_tag="SeAg_B0002"
/note="Homoserine dehydrogenase; Region: Homoserine_dh;
pfam00742"
/db_xref="CDD:201423"
gene 2801..3730
/gene="thrB"
/locus_tag="SeAg_B0003"
/db_xref="GeneID:6793870"
CDS 2801..3730
/gene="thrB"
/locus_tag="SeAg_B0003"
/EC_number="2.7.1.39"
/note="catalyzes the formation of O-phospho-L-homoserine
from L-homoserine in threonine biosynthesis from asparate"
/codon_start=1
/transl_table=11
/product="homoserine kinase"
/protein_id="YP_002144981.1"
/db_xref="GI:197249934"
/db_xref="GeneID:6793870"
/translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGTLLGDVVSVEAADHF
RLHNLGRFADKLPPEPRENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACS
VVAALVAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGI
ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
PQLAAALMKDVIAEPYRARLLPGFSQARQAVSEIGALASGISGSGPTLFALCDKPETA
QRVADWLSKHYLQNQEGFVHICRLDTAGARVVG"
misc_feature 2801..3724
/gene="thrB"
/locus_tag="SeAg_B0003"
/note="homoserine kinase; Provisional; Region: PRK01212"
/db_xref="CDD:179248"
misc_feature 3050..3250
/gene="thrB"
/locus_tag="SeAg_B0003"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:201132"
gene 3734..5020
/gene="thrC"
/locus_tag="SeAg_B0004"
/db_xref="GeneID:6792597"
CDS 3734..5020
/gene="thrC"
/locus_tag="SeAg_B0004"
/EC_number="4.2.3.1"
/note="catalyzes the formation of L-threonine from
O-phospho-L-homoserine"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_002144982.1"
/db_xref="GI:197249168"
/db_xref="GeneID:6792597"
/translation="MKLYNLKDHNEQVSFAQAVTQGLGKQQGLFFPHELPEFSLTEID
EMLNQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGP
TLAFKDFGGRFMAQMLTHISGDKPVTILTATSGDTGAAVAHAFYGLENVRVVILYPRG
KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKTALGLNSANSINISR
LLAQICYYFEAVAQLPQGARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
DTVPRFLHDGKWAPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLTELGYAAVDDT
TTQQTMRELKAKGYISEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVESILGE
TLALPEALAERADLPLLSHHLPADFAALRKLMMTRQ"
misc_feature 3734..5008
/gene="thrC"
/locus_tag="SeAg_B0004"
/note="Threonine synthase [Amino acid transport and
metabolism]; Region: ThrC; COG0498"
/db_xref="CDD:30844"
misc_feature 3737..5002
/gene="thrC"
/locus_tag="SeAg_B0004"
/note="Threonine synthase catalyzes the final step of
threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic phosphate
is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD
includes members from higher plants, cyanobacteria;
Region: Thr-synth_2; cd01560"
/db_xref="CDD:107203"
misc_feature order(4052..4054,4475..4480,4859..4861)
/gene="thrC"
/locus_tag="SeAg_B0004"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107203"
misc_feature 4052..4054
/gene="thrC"
/locus_tag="SeAg_B0004"
/note="catalytic residue [active]"
/db_xref="CDD:107203"
gene complement(5113..5886)
/locus_tag="SeAg_B0005"
/db_xref="GeneID:6795926"
CDS complement(5113..5886)
/locus_tag="SeAg_B0005"
/note="identified by match to protein family HMM PF03883"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144983.1"
/db_xref="GI:197249510"
/db_xref="GeneID:6795926"
/translation="MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAP
QISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFD
FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALE
AQGDRVVVNLASEEYFKSVKPKKLNAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRF
IIENRLTKPEQLIAFDREGYFFDEETSTQDELVFKRYEQ"
misc_feature complement(5116..5886)
/locus_tag="SeAg_B0005"
/note="hypothetical protein; Validated; Region: PRK02101"
/db_xref="CDD:179365"
gene complement(5965..7422)
/locus_tag="SeAg_B0006"
/db_xref="GeneID:6792852"
CDS complement(5965..7422)
/locus_tag="SeAg_B0006"
/note="identified by match to protein family HMM PF01235;
match to protein family HMM TIGR00835"
/codon_start=1
/transl_table=11
/product="amino-acid carrier protein AlsT"
/protein_id="YP_002144984.1"
/db_xref="GI:197248129"
/db_xref="GeneID:6792852"
/translation="MTASTRGTLMPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFI
QFRYIRQFSRSLKGSFSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVF
WMWVSAIIGMATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLL
VAYGLIFNSVQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIP
LIALLWVAGSVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRG
MFSNEAGMGSTPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHA
SHSSTEGIQLLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNA
KAIWLLRLATLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLAGDY
LRQRKLGVRPQFDPRRFPDIEPQLAPDTWDAASRD"
misc_feature complement(6049..7404)
/locus_tag="SeAg_B0006"
/note="Na+/alanine symporter [Amino acid transport and
metabolism]; Region: AlsT; COG1115"
/db_xref="CDD:31312"
misc_feature complement(6022..7242)
/locus_tag="SeAg_B0006"
/note="Sodium:alanine symporter family; Region:
Na_Ala_symp; pfam01235"
/db_xref="CDD:110251"
gene 7664..8617
/gene="tal2"
/locus_tag="SeAg_B0007"
/db_xref="GeneID:6793069"
CDS 7664..8617
/gene="tal2"
/locus_tag="SeAg_B0007"
/EC_number="2.2.1.2"
/note="identified by match to protein family HMM PF00923;
match to protein family HMM TIGR00874"
/codon_start=1
/transl_table=11
/product="transaldolase B"
/protein_id="YP_002144985.1"
/db_xref="GI:197248384"
/db_xref="GeneID:6793069"
/translation="MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
IPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLS
YDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
FAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGY
ETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERI
TEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLL"
misc_feature 7664..8614
/gene="tal2"
/locus_tag="SeAg_B0007"
/note="transaldolase-like protein; Provisional; Region:
PTZ00411"
/db_xref="CDD:240406"
misc_feature 7673..8602
/gene="tal2"
/locus_tag="SeAg_B0007"
/note="Transaldolases including both TalA and TalB;
Region: Transaldolase_TalAB; cd00957"
/db_xref="CDD:188644"
misc_feature order(7712..7714,7760..7762,7766..7771,7943..7945,
7949..7951,8057..8059,8123..8125,8129..8131,8189..8191,
8204..8206)
/gene="tal2"
/locus_tag="SeAg_B0007"
/note="active site"
/db_xref="CDD:188644"
misc_feature order(7973..7975,8498..8500,8507..8509,8519..8524,
8540..8542,8549..8551,8561..8563)
/gene="tal2"
/locus_tag="SeAg_B0007"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188644"
misc_feature 8057..8059
/gene="tal2"
/locus_tag="SeAg_B0007"
/note="catalytic residue [active]"
/db_xref="CDD:188644"
gene 8728..9318
/gene="mogA"
/locus_tag="SeAg_B0008"
/db_xref="GeneID:6796430"
CDS 8728..9318
/gene="mogA"
/locus_tag="SeAg_B0008"
/note="forms a trimer; related to eukaryotic protein
gephyrin; functions during molybdenum cofactor
biosynthesis"
/codon_start=1
/transl_table=11
/product="molybdenum cofactor biosynthesis protein MogA"
/protein_id="YP_002144986.1"
/db_xref="GI:197251166"
/db_xref="GeneID:6796430"
/translation="MDTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFEVQR
RLIPDEQEIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQ
MRQISLRFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKADDGSVSVPGIFA
SVPYCIQLLDGPYVETAPEVVAAFRPKSARRENMSS"
misc_feature 8737..9234
/gene="mogA"
/locus_tag="SeAg_B0008"
/note="MogA_MoaB family. Members of this family are
involved in biosynthesis of the molybdenum cofactor (MoCF)
an essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea; Region: MogA_MoaB;
cd00886"
/db_xref="CDD:238451"
misc_feature order(8950..8958,9046..9048,9124..9129,9139..9141,
9148..9150)
/gene="mogA"
/locus_tag="SeAg_B0008"
/note="MPT binding site; other site"
/db_xref="CDD:238451"
misc_feature order(8956..8958,8962..8967,8971..8973,8983..8985,
9007..9015,9028..9030,9037..9042,9070..9072,9079..9081,
9232..9234)
/gene="mogA"
/locus_tag="SeAg_B0008"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:238451"
gene complement(9375..9941)
/locus_tag="SeAg_B0009"
/db_xref="GeneID:6793492"
CDS complement(9375..9941)
/locus_tag="SeAg_B0009"
/note="identified by match to protein family HMM PF01184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144987.1"
/db_xref="GI:197251907"
/db_xref="GeneID:6793492"
/translation="MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFALDGIILAMGIF
YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKMGLTDAPDAQLLGAY
LGLWGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAVGNITGNEAIIHIAGWVGLVC
GASAIYLAMGEVLNEQFGRTILPIGEAH"
misc_feature complement(9378..9941)
/locus_tag="SeAg_B0009"
/note="hypothetical protein; Provisional; Region:
PRK10659"
/db_xref="CDD:182625"
gene complement(10091..10804)
/locus_tag="SeAg_B0010"
/db_xref="GeneID:6794300"
CDS complement(10091..10804)
/locus_tag="SeAg_B0010"
/note="identified by match to protein family HMM PF03667"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144988.1"
/db_xref="GI:197250147"
/db_xref="GeneID:6794300"
/translation="MNVTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLS
HNELFKAMEGHPEQHRRNWQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKL
KADKSMSTFEIEQQLLEHFLRHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRS
LAKGVSHLLSTQLTRILRTHAAMSILGHGLLRGAGLGGPVGAALNGVKAMSGSAYRVT
IPAVLQIACLRRMMAAVQA"
misc_feature complement(10094..10804)
/locus_tag="SeAg_B0010"
/note="hypothetical protein; Provisional; Region:
PRK10236"
/db_xref="CDD:182323"
misc_feature complement(10688..10792)
/locus_tag="SeAg_B0010"
/note="Domain of unknown function (DUF3944); Region:
DUF3944; pfam13099"
/db_xref="CDD:205280"
misc_feature complement(10094..10690)
/locus_tag="SeAg_B0010"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4735"
/db_xref="CDD:227078"
gene complement(10840..11244)
/locus_tag="SeAg_B0011"
/db_xref="GeneID:6797170"
CDS complement(10840..11244)
/locus_tag="SeAg_B0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144989.1"
/db_xref="GI:197248692"
/db_xref="GeneID:6797170"
/translation="MRSVLTISAGLLFGLALSSVAHANDHKILGVIAMPRNETNDLAL
KIPVCRIVKRIQLTADHGDIELSGASVYFKTARSASQSLNVPSSIKEGQTTGWININS
DNDNKRCVSKITFSGHTVNSSDMARLKVIGDD"
misc_feature complement(10843..11244)
/locus_tag="SeAg_B0011"
/note="hypothetical protein; Provisional; Region:
PRK10154"
/db_xref="CDD:182272"
gene 11299..11424
/locus_tag="SeAg_B0012"
/db_xref="GeneID:6795579"
CDS 11299..11424
/locus_tag="SeAg_B0012"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144990.1"
/db_xref="GI:197247366"
/db_xref="GeneID:6795579"
/translation="MATIQFCNLFFLLQFLCEWYSLFNLFHECLSVWFSIAPSRH"
gene 11593..13509
/gene="dnaK"
/locus_tag="SeAg_B0013"
/db_xref="GeneID:6793910"
CDS 11593..13509
/gene="dnaK"
/locus_tag="SeAg_B0013"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_002144991.1"
/db_xref="GI:197247979"
/db_xref="GeneID:6793910"
/translation="MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQ
DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAW
LDVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
AGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
LATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
NDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
DVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASD
NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
EEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
SALSALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDD
DVVDAEFEEVKDKK"
misc_feature 11593..13392
/gene="dnaK"
/locus_tag="SeAg_B0013"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 11593..12699
/gene="dnaK"
/locus_tag="SeAg_B0013"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
misc_feature order(11614..11625,11629..11631,11635..11637,12103..12105,
12172..12183,12613..12615)
/gene="dnaK"
/locus_tag="SeAg_B0013"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 13595..14734
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/db_xref="GeneID:6797228"
CDS 13595..14734
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="'chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion'"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaJ"
/protein_id="YP_002144992.1"
/db_xref="GI:197250919"
/db_xref="GeneID:6797228"
/translation="MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
AKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFG
DIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQ
PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVK
IPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAM
AALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPV
GLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTR"
misc_feature 13595..14719
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:236757"
misc_feature 13607..13771
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(13691..13699,13724..13726,13733..13738,13745..13750)
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 13949..>14032
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:243362"
misc_feature order(13958..13960,14003..14020)
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 14033..14215
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(14033..14035,14042..14044,14084..14086,14093..14095,
14150..14152,14159..14161,14192..14194,14201..14203)
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 14216..14602
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(14414..14419,14426..14431,14489..14500,14588..14602)
/gene="dnaJ"
/locus_tag="SeAg_B0014"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 14846..14959
/locus_tag="SeAg_B0015"
/db_xref="GeneID:6794053"
CDS 14846..14959
/locus_tag="SeAg_B0015"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144993.1"
/db_xref="GI:197251887"
/db_xref="GeneID:6794053"
/translation="MFLLINKLMLISSFVYAYSLKKRDVMTLMIAFLDAVN"
gene 15015..15962
/locus_tag="SeAg_B0016"
/db_xref="GeneID:6796068"
CDS 15015..15962
/locus_tag="SeAg_B0016"
/note="identified by match to protein family HMM PF00126"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002144994.1"
/db_xref="GI:197251857"
/db_xref="GeneID:6796068"
/translation="MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLA
LKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITL
LGSDIVESYYLSQLYNSDIFDRILINHFTVRNMSREHISELLFTAQGDLLISAEPLLE
SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSEL
FKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPP
PELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR"
misc_feature 15042..15938
/locus_tag="SeAg_B0016"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 15051..15224
/locus_tag="SeAg_B0016"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 15315..15890
/locus_tag="SeAg_B0016"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators that involved in the
catabolism of nitroaromatic/naphthalene compounds and that
of related regulators; contains the type 2 periplasmic
binding fold; Region: PBP2_Nitroaromatics_like; cd08417"
/db_xref="CDD:176109"
misc_feature order(15327..15329,15333..15338,15348..15350,15639..15641,
15870..15872)
/locus_tag="SeAg_B0016"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176109"
misc_feature order(15330..15332,15339..15344,15351..15356,15363..15368,
15378..15383,15390..15395,15399..15410,15414..15416,
15609..15611,15705..15707,15711..15722,15729..15734,
15741..15746,15753..15755)
/locus_tag="SeAg_B0016"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176109"
gene 16131..16433
/locus_tag="SeAg_B0017"
/db_xref="GeneID:6796038"
CDS 16131..16433
/locus_tag="SeAg_B0017"
/codon_start=1
/transl_table=11
/product="bacteriophage protein"
/protein_id="YP_002144995.1"
/db_xref="GI:197249970"
/db_xref="GeneID:6796038"
/translation="MELEILLTIISIGAWGGFVSYLLRKDKTEYNSSHESIKYCLTQI
VISCFTSFLLSAIAIEKECSFNIVLLAAGLGGVFASPILKILGRRIKKIIEGNNSD"
gene complement(16494..17027)
/locus_tag="SeAg_B0018"
/db_xref="GeneID:6796911"
CDS complement(16494..17027)
/locus_tag="SeAg_B0018"
/note="identified by match to protein family HMM PF05838;
match to protein family HMM PF09374"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144996.1"
/db_xref="GI:197250023"
/db_xref="GeneID:6796911"
/translation="MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDM
RDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGAYHPSAWLQRWLNV
FNHEGKRYPDIHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGTYYLNVAEK
NHNNEQFIYGWIKNRVT"
misc_feature complement(<16497..17027)
/locus_tag="SeAg_B0018"
/note="Lysozyme family protein [General function
prediction only]; Region: zliS; COG3926"
/db_xref="CDD:226439"
misc_feature complement(16764..17018)
/locus_tag="SeAg_B0018"
/note="Glycosyl hydrolase 108; Region: Glyco_hydro_108;
pfam05838"
/db_xref="CDD:203334"
misc_feature complement(16500..16757)
/locus_tag="SeAg_B0018"
/note="Predicted Peptidoglycan domain; Region:
PG_binding_3; pfam09374"
/db_xref="CDD:220210"
gene complement(17044..17487)
/locus_tag="SeAg_B0019"
/db_xref="GeneID:6796964"
CDS complement(17044..17487)
/locus_tag="SeAg_B0019"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144997.1"
/db_xref="GI:197251520"
/db_xref="GeneID:6796964"
/translation="MKTYIINSNCIYNEGKYELRTVSNSQVIKMTAMRAKCLSFIIEN
AHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLFITIPRQGLKV
NSDIAIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLMYLHIH"
misc_feature complement(17047..17487)
/locus_tag="SeAg_B0019"
/note="DNA-binding winged-HTH domains [Transcription];
Region: CadC; COG3710"
/db_xref="CDD:226233"
gene complement(17614..17742)
/locus_tag="SeAg_B0020"
/db_xref="GeneID:6796732"
CDS complement(17614..17742)
/locus_tag="SeAg_B0020"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002144998.1"
/db_xref="GI:197251339"
/db_xref="GeneID:6796732"
/translation="MRLTTPSIEEKTTPLSARLLRSGESIVNIIYHVIKYHLISMK"
gene 17868..19967
/locus_tag="SeAg_B0021"
/db_xref="GeneID:6794625"
CDS 17868..19967
/locus_tag="SeAg_B0021"
/note="identified by match to protein family HMM PF00704;
match to protein family HMM PF02839"
/codon_start=1
/transl_table=11
/product="exochitinase"
/protein_id="YP_002144999.1"
/db_xref="GI:197248226"
/db_xref="GeneID:6794625"
/translation="MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYN
KYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGYDLTNVSPTAYDKLIFGFVGITG
FRKIDKEDRDVVAEAAAQCGKVKYEPTFLDPWGDFQSYINLGFETSGWDVDPKTVTQA
NAKGMLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKIFAKGVVKL
FKQFPMFSEVDIDWEYPNDEGAGNPFGPEDGANYALLIAELRKQLDSAGLSNVKISIA
ASAVTTIFDYAKVKDLMAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVET
IVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGPTTGSFESGTSE
WYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAA
KLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDEEQSDSD
DAQKVNHAPKAAIELLVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQITVADKTAEII
EVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVP
DEEEDTTPAEDDTSADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGDQ
PDLNCGVGGAWTDLGAY"
misc_feature 17913..19313
/locus_tag="SeAg_B0021"
/note="Chitinase [Carbohydrate transport and metabolism];
Region: ChiA; COG3325"
/db_xref="CDD:33134"
misc_feature 18030..19262
/locus_tag="SeAg_B0021"
/note="The GH18 (glycosyl hydrolases, family 18) type II
chitinases hydrolyze chitin, an abundant polymer of
N-acetylglucosamine and have been identified in bacteria,
fungi, insects, plants, viruses, and protozoan parasites.
The structure of this domain is an...; Region:
GH18_chitinase; cd06548"
/db_xref="CDD:119365"
misc_feature order(18039..18041,18156..18158,18552..18554,18558..18560,
18564..18566,18774..18776,18780..18785,18933..18935,
19245..19247)
/locus_tag="SeAg_B0021"
/note="active site"
/db_xref="CDD:119365"
misc_feature 19404..19964
/locus_tag="SeAg_B0021"
/note="Uncharacterized protein contain chitin-binding
domain type 3 [General function prediction only]; Region:
COG3979"
/db_xref="CDD:33759"
misc_feature 19806..19952
/locus_tag="SeAg_B0021"
/note="Chitin-binding domain of chitinase C; Region:
ChiC_BD; cd12215"
/db_xref="CDD:213178"
misc_feature 19893..19898
/locus_tag="SeAg_B0021"
/note="aromatic chitin/cellulose binding site residues
[chemical binding]; other site"
/db_xref="CDD:213178"
gene 20060..23056
/locus_tag="SeAg_B0022"
/db_xref="GeneID:6796513"
CDS 20060..23056
/locus_tag="SeAg_B0022"
/codon_start=1
/transl_table=11
/product="hydroxymethyltransferase"
/protein_id="YP_002145000.1"
/db_xref="GI:197248849"
/db_xref="GeneID:6796513"
/translation="MTISIHASAFDVNSWYQKITLTFINESGNPVDMNHAAISFTASG
HIDPWGNSGGTLKGNLPLTLNDSSYGTLETNNIIINNSDALLLQPGERGTLSFSLAAT
QVPVKMSAITLTLASSSSEDAESETPSDQETPAIPAADEQPAEPDVPEKDNDLQERGL
TLNVSELNTASWYQRVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQA
VTLASDGGWPIEKNTITINHDGALMLAAGDTVELQCYLAATQMPVAISDLSATLAHDP
ARQGKICVHFPAMTQTVALKPAIELLFPAGETRRFVGEWGEVLTISDLSAGTYRLTVP
ALANDEMQIAPVESSFTVTLQSGDAAAQVQVSCLPIVRYASARLMIDAPALGNAKLTV
DIADTTQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPA
AAQVAEVAVAYQQSALDTASFVTVDATLLGLPDGVAPQRYLFSSGKYQYSLMLESGSD
RQTLALRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKG
WPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDGFLDYA
TLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALADLQDAQKLRNHFGNFITQ
CLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALP
AMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTAD
PVAEGQAIAGFIHELGVYSGEYAPDFIAFDKFERDCFSPDALAHYGWNATCWLNYLAM
VKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLS
LQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITT
IHSNGEDGGWLADKMVEYYAAPRYFR"
gene 23337..24041
/locus_tag="SeAg_B0023"
/db_xref="GeneID:6795003"
CDS 23337..24041
/locus_tag="SeAg_B0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145001.1"
/db_xref="GI:197250746"
/db_xref="GeneID:6795003"
/translation="MKKMMNDAFAKDNNENSLHSFLFSQQAKPHAAIDALFSALLPFG
QPFTLGIGDEFYLQANDEHYIVLLESGVVSFCHNDKRLHISSSFAPSVVGMVDSYGAT
YNVPARPEHFLLAETVCTGRFVRLPDFIKIADECDLWHDVARCLAYRLMVMSARDREL
VGVDSYLKVRALLTEIWAYPQAYRESIIVLNFIQRRTGISRSRTMKILSELKKGGYIH
IDNGRLTALGKLPVAY"
misc_feature 23436..24026
/locus_tag="SeAg_B0023"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature 23844..23987
/locus_tag="SeAg_B0023"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:214025"
gene 24471..25013
/locus_tag="SeAg_B0024"
/db_xref="GeneID:6793876"
CDS 24471..25013
/locus_tag="SeAg_B0024"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145002.1"
/db_xref="GI:197250118"
/db_xref="GeneID:6793876"
/translation="MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVVDAA
CSVSADSVDQTVTLGQVRASKLTEAGMVANQKEDFTIKLEDCDTQTSQNAAVIFNGQQ
DANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSVDYIA
TGTATAGNVTATATFSMVYS"
misc_feature 24471..25010
/locus_tag="SeAg_B0024"
/note="fimbrial protein BcfA; Provisional; Region:
PRK15187"
/db_xref="CDD:185109"
gene 25114..25800
/locus_tag="SeAg_B0025"
/db_xref="GeneID:6797138"
CDS 25114..25800
/locus_tag="SeAg_B0025"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="chaperone protein FimC"
/protein_id="YP_002145003.2"
/db_xref="GI:449785010"
/db_xref="GeneID:6797138"
/translation="MKKNVPIFLRLLLLLSAAGLSFAAQAGGIALGATRVIYPQGSKQ
TSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLP
TDRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCR
NERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLPATPGQVSLRTVNDFGA
TTPARVCPAS"
misc_feature 25114..25797
/locus_tag="SeAg_B0025"
/note="fimbrial chaperone protein BcfB; Provisional;
Region: PRK15188"
/db_xref="CDD:185110"
misc_feature 25195..25554
/locus_tag="SeAg_B0025"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature 25609..25776
/locus_tag="SeAg_B0025"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene 25760..28426
/locus_tag="SeAg_B0026"
/db_xref="GeneID:6795686"
CDS 25760..28426
/locus_tag="SeAg_B0026"
/note="identified by match to protein family HMM PF00577"
/codon_start=1
/transl_table=11
/product="outer membrane usher protein FimD"
/protein_id="YP_002145004.1"
/db_xref="GI:197251618"
/db_xref="GeneID:6795686"
/translation="MAQRRQHAFVQLHDVMRNQLFMTRYYSSVTKPVLTPLALAIALA
PAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLATRDIAFQA
VKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR
FDFAQQRLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAE
NSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAG
DSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQ
RYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATV
AEYRSDSSQKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVS
LDVTQATSTLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKR
MSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWH
TDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEV
TRHHNVYATFSTSTDKEHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLE
YDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAAN
VGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALV
LARFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLH
VRWGNLPDQQCVASYHLSSSRQILSRQHAECH"
misc_feature 25811..28423
/locus_tag="SeAg_B0026"
/note="outer membrane usher protein; Provisional; Region:
PRK15193"
/db_xref="CDD:185115"
misc_feature 25916..26377
/locus_tag="SeAg_B0026"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature 26423..28165
/locus_tag="SeAg_B0026"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature 28190..28387
/locus_tag="SeAg_B0026"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene 28427..29434
/locus_tag="SeAg_B0027"
/db_xref="GeneID:6796347"
CDS 28427..29434
/locus_tag="SeAg_B0027"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="mannose binding protein FimH"
/protein_id="YP_002145005.1"
/db_xref="GI:197250867"
/db_xref="GeneID:6796347"
/translation="MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTA
EQNQVGKTVQLEKSQEVNVQAVCPAGAATYSQTYRSYVSPYPVVETSGNWKYLKLDPD
YLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV
NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGN
FNHAGQKPEGVRAKKFSVPVKCSGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVV
ETDEGNALIPNDAQSVAPFITDSAGRANITLQAYPVSTTGETPAEGAFTALASLRVDF
D"
misc_feature 28427..29431
/locus_tag="SeAg_B0027"
/note="fimbrial protein BcfD; Provisional; Region:
PRK15189"
/db_xref="CDD:185111"
gene 29465..29980
/locus_tag="SeAg_B0028"
/db_xref="GeneID:6795771"
CDS 29465..29980
/locus_tag="SeAg_B0028"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145006.1"
/db_xref="GI:197250403"
/db_xref="GeneID:6795771"
/translation="MGLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDL
GQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAGAKIWFTGEPDPDNPALLAITDTGMG
SGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNA
TAVMYFDMQYE"
misc_feature 29465..29977
/locus_tag="SeAg_B0028"
/note="fimbrial protein BcfE; Provisional; Region:
PRK15190"
/db_xref="CDD:185112"
gene 29996..30514
/locus_tag="SeAg_B0029"
/db_xref="GeneID:6795128"
CDS 29996..30514
/locus_tag="SeAg_B0029"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145007.1"
/db_xref="GI:197249913"
/db_xref="GeneID:6795128"
/translation="MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSEN
INVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASGVTVSFSGAADSRNTDLLALT
AGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGAVTPGD
ANASATFILAYE"
misc_feature 29996..30511
/locus_tag="SeAg_B0029"
/note="fimbrial protein BcfF; Provisional; Region:
PRK15191"
/db_xref="CDD:185113"
gene 30480..31211
/locus_tag="SeAg_B0030"
/db_xref="GeneID:6792576"
CDS 30480..31211
/locus_tag="SeAg_B0030"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="fimbrial chaperone"
/protein_id="YP_002145008.2"
/db_xref="GI:449785011"
/db_xref="GeneID:6792576"
/translation="MPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHA
GAPALSVPVSNHSEASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSM
RVVYTGGPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQA
YRHLIWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRC
TVRWQSINDYGRVMPAQTVDLTRIH"
misc_feature 30507..31208
/locus_tag="SeAg_B0030"
/note="fimbrial chaperone BcfG; Provisional; Region:
PRK15192"
/db_xref="CDD:185114"
misc_feature 30573..30941
/locus_tag="SeAg_B0030"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature 30999..31178
/locus_tag="SeAg_B0030"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene 31276..32121
/locus_tag="SeAg_B0031"
/note="BcfH; this gene contains a frame shift which may be
the result of sequencing error; identified by match to
protein family HMM PF01323"
/pseudogene="unknown"
/db_xref="GeneID:6794397"
gene 32160..32447
/locus_tag="SeAg_B0032"
/note="conserved hypothetical protein; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6795164"
gene complement(32547..32996)
/locus_tag="SeAg_B0033"
/db_xref="GeneID:6797282"
CDS complement(32547..32996)
/locus_tag="SeAg_B0033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145009.1"
/db_xref="GI:197247417"
/db_xref="GeneID:6797282"
/translation="MRQYTINNEFIYNESLREIISLHDKKVLKVTLMRARCLSYLFEN
AYKKLITREMISHAVWGERSQFVSDANLTQLLYLLRRDLQQIGLFELFVTLPRQGIKI
DERFIIDAADIPPQAIQHHTHRCNKIISIGIPTLFLLIVLFFLAPFI"
misc_feature complement(32556..32996)
/locus_tag="SeAg_B0033"
/note="DNA-binding winged-HTH domains [Transcription];
Region: CadC; COG3710"
/db_xref="CDD:33505"
gene 33366..34370
/locus_tag="SeAg_B0034"
/db_xref="GeneID:6794425"
CDS 33366..34370
/locus_tag="SeAg_B0034"
/note="identified by match to protein family HMM PF00126"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002145010.1"
/db_xref="GI:197249381"
/db_xref="GeneID:6794425"
/translation="MRPIKNAKKIDYNLIKVFDTVITEGNATRAARKLDVTPAAISQA
LLRLQNLYGEELFIRTRKGLVPSSKGKSLHQVFRQAIESIESTLCDKTDAQDSNELIV
LGSDITENYYFPALLDTVLMNRYIIKHYAIKKTGEYSPASMLTHGYADVIMGILEIKN
EMIESYLIDNLSDFVCVCGEKSPLVGLEKMSLYNFYAARHAVYHSDMFSSFTTDSIDL
FKSSTPYAGRREIGYYSDSLFGVIGVVEKSDMVAILPGKIATYFRDVRRYNIKILRMP
DEIIFRTLPVYAYLATNSTHYKNAKKLISTFQSTFLFSQEKQPDALVEGSTSLCDLSV
"
misc_feature 33393..34298
/locus_tag="SeAg_B0034"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 33402..33578
/locus_tag="SeAg_B0034"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature <33810..34232
/locus_tag="SeAg_B0034"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene complement(34378..34815)
/locus_tag="SeAg_B0035"
/db_xref="GeneID:6795388"
CDS complement(34378..34815)
/locus_tag="SeAg_B0035"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002145011.1"
/db_xref="GI:197250600"
/db_xref="GeneID:6795388"
/translation="MTIYLINSTHTYNDKTNELKNIKTGKMIKIAAMRIKCLEYMLNH
AQQEIIYKKQLTNELWGERSQFISDANLTQILYLLRRDLKGFGLSQFFSTVPRTGIKV
DANIIISNEKKNLPSSLKKEEYKYIALFFALLTMVITVIYLIQ"
misc_feature complement(34384..34815)
/locus_tag="SeAg_B0035"
/note="DNA-binding winged-HTH domains [Transcription];
Region: CadC; COG3710"
/db_xref="CDD:33505"
gene 34827..34973
/locus_tag="SeAg_B0036"
/db_xref="GeneID:6793972"
CDS 34827..34973
/locus_tag="SeAg_B0036"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145012.1"
/db_xref="GI:197251863"
/db_xref="GeneID:6793972"
/translation="MGLIGVAIIICILNLWINWRDCNSVFFPEKIVSCHKNDGFLEKL
KFYF"
gene 35338..37056
/locus_tag="SeAg_B0037"
/db_xref="GeneID:6796044"
CDS 35338..37056
/locus_tag="SeAg_B0037"
/note="identified by match to protein family HMM PF05935"
/codon_start=1
/transl_table=11
/product="arylsulfotransferase"
/protein_id="YP_002145013.1"
/db_xref="GI:197251278"
/db_xref="GeneID:6796044"
/translation="MNKKSSSMVNMPAPREPINQKIDTNNALVLNHNAIYEQRLAEIT
QSNTCDKAIVTVNPYGTAPLSLYLGVWMDEAAALEINVVDSEATTEEVRYQYDVHPGA
NLIPVCGMVSAVNNQITLRLASQIVGQYTVMTDALPPTDSANVSLGFPIISVSCPAQQ
ASLMEEGLYFSTYFDRYNLAFDHNGIVRWYVSQEIPSYNFVRMDNGHFLATSQGINHC
LNMYEFDIMGRVYTVYLLDNEFHHSILPIENNLAIAPSEYSNGRPDGYSTGKDGVSII
NLSTGLEVAYYDMLYVMDYSRSPRPSGSAPGQDVSMDDWLHINQSYINEPNNLLICSG
RHQSAIFGVNVDSGELRFIMANHEDWSDEFKQYLLTPVDDDGVPLYDLTSPGGIDAAD
KNFWTWGQHNIVEIPNDEPGILEFMVFDNGNYRSREDAKSLLPLDNFSRVVQFKINLN
TMTVTRPYEYGKTEVGNRGYSSFVSAKHLLTNGHLVIHFGATTVDEFEHTITAQPGSS
DLVDPDEGQQALGRLVLQEINKETKEVLFEAMVTSGYFKNEETNGTNYRYDISAFRVY
KMPLFA"
misc_feature 35497..37008
/locus_tag="SeAg_B0037"
/note="Arylsulfotransferase (ASST); Region:
Arylsulfotrans; pfam05935"
/db_xref="CDD:147858"
gene complement(37102..38664)
/locus_tag="SeAg_B0038"
/db_xref="GeneID:6793442"
CDS complement(37102..38664)
/locus_tag="SeAg_B0038"
/note="identified by match to protein family HMM PF00149;
match to protein family HMM PF02872"
/codon_start=1
/transl_table=11
/product="5'-nucleotidase"
/protein_id="YP_002145014.1"
/db_xref="GI:197250571"
/db_xref="GeneID:6793442"
/translation="MNKKFSISLLSLCIGLSSAISFSADARDITIYYTNDLHAHVTPE
IIPYVSKTRPVGGFAPISKIVKDAKAKEKDVFFFDAGDYFTGPFISTLTKGEAIIDIL
NTMPYDAVSVGNHEFDHGHENLVKQLSKLQFPVLLDNVFYSGTDTPLIKEPYTIVEKD
GFKIGVIGMHGVSAFYEAIAAGVREGVDCRDPIPYVKKQLEELKGKVDLTVLLAHEGV
PGMQSSAGEADVARALKTDVDMAKSLEGYGLNVLITGHAHKGTPEPIKVGDTLVVSTD
AYTIELGKLVLDWNPETKKVDSYNGKLITMYADTYKPDPVTQAKIDEWDNKVKKITDE
VVAHSPEVLTRSYGESAPTGNLITDALMATVPGADASFYNAGGIRTELPKGNITYGDV
LSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKTVQFKYDSTKPLGQRIVEF
DIKGKPVEDNKLYTVALDSFIGKGGGGFTFTKGKNIKYIGIQTAPALVNYMKQVNNIQ
PDHTMRVDDISK"
misc_feature complement(37111..38598)
/locus_tag="SeAg_B0038"
/note="5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism];
Region: UshA; COG0737"
/db_xref="CDD:31080"
misc_feature complement(37747..38580)
/locus_tag="SeAg_B0038"
/note="Escherichia coli UshA-like family, N-terminal
metallophosphatase domain; Region: MPP_UshA_N_like;
cd00845"
/db_xref="CDD:163620"
misc_feature complement(order(37891..37893,37897..37899,38020..38022,
38320..38325,38419..38421,38551..38553,38557..38559))
/locus_tag="SeAg_B0038"
/note="active site"
/db_xref="CDD:163620"
misc_feature complement(order(37891..37893,37897..37899,38020..38022,
38323..38325,38419..38421,38551..38553,38557..38559))
/locus_tag="SeAg_B0038"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163620"
misc_feature complement(37252..37632)
/locus_tag="SeAg_B0038"
/note="5'-nucleotidase, C-terminal domain; Region:
5_nucleotid_C; pfam02872"
/db_xref="CDD:202440"
gene complement(38772..39533)
/locus_tag="SeAg_B0039"
/db_xref="GeneID:6794488"
CDS complement(38772..39533)
/locus_tag="SeAg_B0039"
/note="identified by match to protein family HMM PF07135"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145015.1"
/db_xref="GI:197248673"
/db_xref="GeneID:6794488"
/translation="MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKG
FVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSN
FTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWK
FMPRWTASVSYRYFNNKLGYDGYGDRMNYLIGFEF"
misc_feature complement(38775..39425)
/locus_tag="SeAg_B0039"
/note="Nucleoside-specific channel-forming protein, Tsx;
Region: Channel_Tsx; pfam03502"
/db_xref="CDD:190665"
gene 40128..41621
/locus_tag="SeAg_B0040"
/db_xref="GeneID:6795888"
CDS 40128..41621
/locus_tag="SeAg_B0040"
/note="identified by match to protein family HMM PF00884"
/codon_start=1
/transl_table=11
/product="sulfatase"
/protein_id="YP_002145016.1"
/db_xref="GI:197249148"
/db_xref="GeneID:6795888"
/translation="MKRTVVASMIGLALCAGSVLSTAQAATAKRPNLVIILADDLGYG
DLATYGHRIVKTPNIDKLAQEGVKFTDYYAPAPLCSPSRAGLLTGRMPFRTGIRSWIP
EGKDVALGRNELTIANLLKQQGYDTAMMGKLHLNAGGDRTDQPQAKDMGFDYTLVNPA
GFVTDATLDNAKERPRYGVVHPTGWIRNGQHIGRADKMSGEFVSSEVVNWLDNKKDDN
PFFLYVAFTEVHSPLASPKKYLDMYSQYMTDYQKQHPDLFYGDWADKPWRGTGEYYAN
ISYMDEQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRK
DNLWEGGIRVPAIIKYGKHIPQGMVTDTPVYGLDWLPTLANMMDFKLPTDRTYDGQSL
VPLLKDKTLKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDR
FETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG"
misc_feature 40206..41582
/locus_tag="SeAg_B0040"
/note="Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism]; Region: AslA; COG3119"
/db_xref="CDD:32933"
misc_feature 40218..41330
/locus_tag="SeAg_B0040"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene 41723..42910
/locus_tag="SeAg_B0041"
/db_xref="GeneID:6794279"
CDS 41723..42910
/locus_tag="SeAg_B0041"
/note="identified by match to protein family HMM PF04055"
/codon_start=1
/transl_table=11
/product="chondroitin sulfate/heparin utilization
regulation protein"
/protein_id="YP_002145017.1"
/db_xref="GI:197247602"
/db_xref="GeneID:6794279"
/translation="MFGKSCQVMVKPTGSVCNLDCKYCFYLEKEKLYPDRKNHYKMSE
ETLELFIRQQIAAQDIDEVIFAWQGGEPTLMGIPFYRKAVEFQQRYCGGKTIVNTFQT
NGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEKVENAVRCLAQHN
VEFNTLTVVNRTNMHHPVQVYRYLKSIGSRYMQFIPLVERCGENGLAQPQDKHIAMTP
WSVDSLQFGQFLNAVFDVWIREDIGDIGIQLFEQTLAAWCGLPPQVCVFAPTCGSAFA
MEMNGDVYNCDHFVYPQFKLGNIHQKTLRQMNQGEQNRQFGSDKQHSMAQECHRCQWK
FACYGGCPKHRFLPSASGATNHNYLCAGYQAFFSHTATAMSAMRTLYEKGISPAEIKS
IFV"
misc_feature 41741..42862
/locus_tag="SeAg_B0041"
/note="anaerobic sulfatase-maturating enzyme; Region:
sulfatase_rSAM; TIGR03942"
/db_xref="CDD:188457"
misc_feature 41771..>42184
/locus_tag="SeAg_B0041"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(41771..41773,41777..41779,41783..41785,41789..41797,
41924..41926,41930..41935,42023..42031,42095..42097)
/locus_tag="SeAg_B0041"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 42533..42802
/locus_tag="SeAg_B0041"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene 42935..44182
/locus_tag="SeAg_B0042"
/db_xref="GeneID:6794699"
CDS 42935..44182
/locus_tag="SeAg_B0042"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145018.1"
/db_xref="GI:197247498"
/db_xref="GeneID:6794699"
/translation="MFSHINVDACKTPGCKNLGILGSPDYLPQGKNVLCRACGFLFPI
ISARSLNLFRQAANQPWKGLVKSCPHCGGTSLKKYGFSTKGERRMYCRQCNKTFISYT
AIRSDARQENLATLIGEGASLVEIRAALAIDSTGFSRELQKLSRRANQAERDFVFPAF
DIAMSTRAFRVKFNGGDSSLYVLVTAEEESGKVVAISTNYSAQPVEADYQYHSDYEER
LPSGTLAHLVQRKEALTMRRNVLFDVDYGPAILYKNDPGMLVKPVLPAYRHFELVQAL
TDERSLNVQHYLDHECFILGGCMMANFSYLRQGRCHISFVRERGVTPPKRDLPPRLFL
SGGIRNNVWRTFSTRDYAMAVCNLTGNKKVSLLRHATLNSATAFIRYVHNHPFLPHLN
RMSPGNVVAVLDYLKFEYNASRN"
misc_feature <43130..43375
/locus_tag="SeAg_B0042"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3677"
/db_xref="CDD:33474"
gene 44309..46024
/locus_tag="SeAg_B0043"
/db_xref="GeneID:6793141"
CDS 44309..46024
/locus_tag="SeAg_B0043"
/note="identified by match to protein family HMM PF05935"
/codon_start=1
/transl_table=11
/product="arylsulfotransferase"
/protein_id="YP_002145019.1"
/db_xref="GI:197248163"
/db_xref="GeneID:6793141"
/translation="MNTLTATSVVLPAPRPAINQGIDINNEMVLNHTAIYENCLAQVT
QENTVENALMLLDPYGTAPLSAYAGVWSLESAEIIVTVQDAAKTAMPVEHLYTLTPGA
NLLPVLGLVADTENRIVFSQADTPLAVYTLTTQPLPPADSAEVVLGFPIINVTQPATD
ADKMAPGFYFITHFDRYNYALDQNGLVRWYVTQDYPSYNFVRIDNGHFLTTSEAKNTY
LDMYEFDMMGRLHTFYNLDNQFHHSIWPWDSNTIVAPSEYTSGRPDDLKTNEDGVSVV
DLTTGLETAYYDMAKVLDTTRVSRPSGTAPGEDPTVKDWLHINQSYVNETNQLLIASG
RHQSAVFGVDLQTQALRFILSTHEDWDDAYQPYLLTPVDSEGVALYDFSKQEDIDAAD
RDFWTWGQHNVVEIANNTPGIVEFMVFDNGNYRSRDDSKSLLPPDNYSRIVHFVVNMN
EMTVMRPFEYGKELGARGYSSCVSAKAIQQNGNIVVHFADCTFDENGRAISCQPGESD
IIDPQAGSEAMGLLILQEIAPTEKTVLFEATMTSGYYKNAETNGEGYRYDITSFRVYK
MDLYA"
misc_feature 44465..45976
/locus_tag="SeAg_B0043"
/note="Arylsulfotransferase (ASST); Region:
Arylsulfotrans; pfam05935"
/db_xref="CDD:147858"
gene 46187..47353
/gene="nhaA"
/locus_tag="SeAg_B0044"
/db_xref="GeneID:6793103"
CDS 46187..47353
/gene="nhaA"
/locus_tag="SeAg_B0044"
/note="exports sodium by using the electrochemical proton
gradient to allow protons into the cell; functions in
adaptation to high salinity and alkaline pH; activity
increases at higher pH; downregulated at acidic pH"
/codon_start=1
/transl_table=11
/product="pH-dependent sodium/proton antiporter"
/protein_id="YP_002145020.1"
/db_xref="GI:197251902"
/db_xref="GeneID:6793103"
/translation="MKHLHRFFSSDASGGIILIIAAALAMLMANMGATSGWYHDFLET
PVQLRVGALEINKNMLLWINDALMAVFFLLIGLEVKRELMQGSLASLRQAAFPVIAAI
GGMIVPALLYLAFNYSDPVTREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
IIDDLGAIVIIALFYTSDLSIVSLGVAAFAIAVLALLNLCGVRRTGVYILVGAVLWTA
VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
QGVTIDGLTSMLPLGIIAGLLIGKPLGISLFCWLALRFKLAHLPQGTTYQQIMAVGIL
CGIGFTMSIFIASLAFGNVDPELINWAKLGILIGSLLSAVVGYSWLRARLNAPA"
misc_feature 46187..47344
/gene="nhaA"
/locus_tag="SeAg_B0044"
/note="pH-dependent sodium/proton antiporter; Reviewed;
Region: nhaA; PRK09561"
/db_xref="CDD:181955"
gene 47415..48314
/gene="nhaR"
/locus_tag="SeAg_B0045"
/db_xref="GeneID:6794294"
CDS 47415..48314
/gene="nhaR"
/locus_tag="SeAg_B0045"
/note="Na+/H+ antiporter regulatory protein; activates the
genes nhaA and osmC"
/codon_start=1
/transl_table=11
/product="transcriptional activator NhaR"
/protein_id="YP_002145021.1"
/db_xref="GI:197250162"
/db_xref="GeneID:6794294"
/translation="MSMSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKAL
EERLQGKLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVA
DALSKRLVSSVLDAAVVVDEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQE
GLFSVKIGECSVSFWCTNPLPEKAFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLQV
EILGEFDDAALMKAFGATHDAIFVAPSLYSLDFYADESVIEIGRVENVMEEYHAIFAE
RMIQHPAVQRICNADYSALFKLQ"
misc_feature 47421..48305
/gene="nhaR"
/locus_tag="SeAg_B0045"
/note="transcriptional activator NhaR; Provisional;
Region: nhaR; PRK11062"
/db_xref="CDD:182938"
misc_feature 47439..47615
/gene="nhaR"
/locus_tag="SeAg_B0045"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 47700..48302
/gene="nhaR"
/locus_tag="SeAg_B0045"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional activator of the nhaA gene,
encoding Na+/H+ antiporter, contains the type 2
periplasmic binding fold; Region: PBP2_NhaR; cd08429"
/db_xref="CDD:176120"
misc_feature order(47745..47750,47754..47759,47766..47768,47778..47780,
47784..47804,48075..48092,48108..48113,48117..48122)
/gene="nhaR"
/locus_tag="SeAg_B0045"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176120"
gene complement(48369..50408)
/locus_tag="SeAg_B0046"
/db_xref="GeneID:6797185"
CDS complement(48369..50408)
/locus_tag="SeAg_B0046"
/note="identified by match to protein family HMM PF01055"
/codon_start=1
/transl_table=11
/product="glycoside hydrolase, family 31"
/protein_id="YP_002145022.1"
/db_xref="GI:197248810"
/db_xref="GeneID:6797185"
/translation="MPFMQQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNE
DWALTEPVAESQCHIDYEHHQATLTNGKIIAIVNQKGQVTFYRHPHKPLLQEFWRLRG
EIGEDESSHGQYVSALNLEGREFRPIQGGKYSLKARFEATEGEKIYGMGQYQQANLDL
KGCVLELAQRNSQASVPFMLSSLGYGFLWNNPAVGRVTFAQNVTEWEAQVSEQLDYWI
TAGDTPAEISRAYALATGTPPMMPDYAMGFWQCKLRYRTQEELLEVAREYKRRNLPIS
VIVIDFFHWPNQGDWMFDARDWPDPDAMIAELKSLGIELMVSVWPTVDNRTESYREMR
ENGWLVQTERGLPINMDFLGNTTYFDATHPGARDYVWGKAKRNYYDKGVKLFWLDEAE
PEFSVYDYDNYRYHAGPVLEVGNIYPRMYAKTFFDGMKADGEDQVINLLRCAWAGSQK
FGALVWSGDIHSSFRSLRNQFAAGLNMGIAGIPWWTTDIGGFHGGNIHDPKFHELLIR
WFQWGVFSPVMRLHGNRDPQILPAQPYRDGIAQCPTGAPNEVWSYGEEVCEVLTGCLA
LREKLKPYIKALMEETHKHNTPVMRPLFFEFPEQETSWAITDQYCFGPDLLIAPVMHE
GMRERDIWLPEGETWTDLATGESYSGGQTLQYATPLNRIPVFIREGGQYRSLLNL"
misc_feature complement(48399..50330)
/locus_tag="SeAg_B0046"
/note="putative alpha-glucosidase; Provisional; Region:
PRK10658"
/db_xref="CDD:182624"
misc_feature complement(49812..49979)
/locus_tag="SeAg_B0046"
/note="Galactose mutarotase-like; Region: Gal_mutarotas_2;
pfam13802"
/db_xref="CDD:205975"
misc_feature complement(48723..49703)
/locus_tag="SeAg_B0046"
/note="XylS is a glycosyl hydrolase family 31 (GH31)
alpha-xylosidase found in prokaryotes, eukaryotes, and
archaea, that catalyzes the release of alpha-xylose from
the non-reducing terminal side of the alpha-xyloside
substrate. XylS has been characterized in...; Region:
GH31_xylosidase_XylS; cd06591"
/db_xref="CDD:133122"
misc_feature complement(order(48843..48845,48933..48935,49032..49034,
49041..49043,49083..49085,49242..49244,49566..49568))
/locus_tag="SeAg_B0046"
/note="putative active site [active]"
/db_xref="CDD:133122"
misc_feature complement(order(49032..49034,49242..49244))
/locus_tag="SeAg_B0046"
/note="putative catalytic site [active]"
/db_xref="CDD:133122"
gene complement(50448..51863)
/locus_tag="SeAg_B0047"
/db_xref="GeneID:6796611"
CDS complement(50448..51863)
/locus_tag="SeAg_B0047"
/note="identified by match to protein family HMM
TIGR00792"
/codon_start=1
/transl_table=11
/product="xylose-proton symporter"
/protein_id="YP_002145023.1"
/db_xref="GI:197249256"
/db_xref="GeneID:6796611"
/translation="MFFWAYRTNIGVIIMSSVIEDTQPSGSASLSLLQRISYGSLDVA
GNLLYCFGSTYILYFYTDVAGISLAVAGVILLLARIIDGIDAPIWGIIIDKTRSRYGK
CRPWFLWLPLPFAVFSALSFWSPDISMTGKAIYAAISYMIASILFTGLNTPLSAILPL
MTLSPKERLVLNSWRMTGGQIGVLLMNATALPLVAFLGNGDDHAGFIYTAITFAIISC
ALTLFAFKNIREMDTDKIQHEPKLPMKKSFAAMKGNWPWILMVLANLIFWIALQQRNT
TIVYYLTYNLDRKDLVPLINSLATIQILFIIAIPFFSKYLAKTWIWVGGLLVATFGGV
MMWLAADNITFLIAAWILGNIGSGIACSMPFAMLGFAVDFGAWKTGIKATGILIAFGS
TFCIKMGSGLGTAFAAWIMNSFGYVPNHAQSAAGLEGIIWAFIWAPALLFALAAIPLL
FFRKYEAMEEKIRHDLETVNS"
misc_feature complement(50463..51800)
/locus_tag="SeAg_B0047"
/note="Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism]; Region: MelB;
COG2211"
/db_xref="CDD:32393"
misc_feature complement(50574..51779)
/locus_tag="SeAg_B0047"
/note="melibiose:sodium symporter; Provisional; Region:
PRK10429; cl15392"
/db_xref="CDD:199528"
gene complement(52277..52540)
/gene="rpsT"
/locus_tag="SeAg_B0048"
/db_xref="GeneID:6795257"
CDS complement(52277..52540)
/gene="rpsT"
/locus_tag="SeAg_B0048"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_002145024.1"
/db_xref="GI:197247824"
/db_xref="GeneID:6795257"
/translation="MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
AAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
misc_feature complement(52280..52540)
/gene="rpsT"
/locus_tag="SeAg_B0048"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 52715..52861
/locus_tag="SeAg_B0049"
/db_xref="GeneID:6794767"
CDS 52715..52861
/locus_tag="SeAg_B0049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145025.1"
/db_xref="GI:197249372"
/db_xref="GeneID:6794767"
/translation="MRKIALSGGFWGGVCRMAMKSIFFMFHQGNSRLTLTAVQGILLR
FSLF"
misc_feature <52715..52858
/locus_tag="SeAg_B0049"
/note="Protein of unknown function (DUF2575); Region:
DUF2575; pfam10837"
/db_xref="CDD:151286"
gene 52869..53807
/gene="ribF"
/locus_tag="SeAg_B0050"
/db_xref="GeneID:6795378"
CDS 52869..53807
/gene="ribF"
/locus_tag="SeAg_B0050"
/EC_number="2.7.1.26"
/EC_number="2.7.7.2"
/note="catalyzes the formation of FMN from riboflavin and
the formation of FAD from FMN; in Bacillus the ribC gene
has both flavokinase and FAD synthetase activities"
/codon_start=1
/transl_table=11
/product="bifunctional riboflavin kinase/FMN
adenylyltransferase"
/protein_id="YP_002145026.1"
/db_xref="GI:197248853"
/db_xref="GeneID:6795378"
/translation="MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQGLQEEGRR
RGLPVVVMIFEPQPLELFATDKAPARLTRLREKLHYLAQCGVDYVLCVKFDRRFAALT
AQTFISELLVERLGVQFLAVGDDFRFGASRAGDFLLLQKAGAEYGFAVSSTQTFCEGG
VRISSTAVRQALAEDNLALAESLLGHPFTISGRVVHGDELGRTIGFPTANLPLRRQVS
PVKGVYAVEVTGLGDKPLPGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILR
KKIRNEQRFASLDELKAQIARDELTARKFFGLAGQV"
misc_feature 52872..53792
/gene="ribF"
/locus_tag="SeAg_B0050"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:180171"
misc_feature 52917..53459
/gene="ribF"
/locus_tag="SeAg_B0050"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature order(52932..52943,52950..52952,52959..52961,53241..53243,
53331..53333,53355..53363)
/gene="ribF"
/locus_tag="SeAg_B0050"
/note="active site"
/db_xref="CDD:185679"
misc_feature 53415..53786
/gene="ribF"
/locus_tag="SeAg_B0050"
/note="Riboflavin kinase; Region: Flavokinase; smart00904"
/db_xref="CDD:197972"
gene 53816..56686
/gene="ileS"
/locus_tag="SeAg_B0051"
/db_xref="GeneID:6795007"
CDS 53816..56686
/gene="ileS"
/locus_tag="SeAg_B0051"
/EC_number="6.1.1.5"
/note="'IleRS; catalyzes the formation of
isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since
isoleucine and other amino acids such as valine are
similar, there are additional editing function in this
enzyme; one is involved in hydrolysis of activated
valine-AMP and the other is involved in deacylation of
mischarged Val-tRNA(Ile); there are two active sites, one
for aminoacylation and one for editing; class-I
aminoacyl-tRNA synthetase family type 1 subfamily; some
organisms carry two different copies of this enzyme'"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_002145027.1"
/db_xref="GI:197248475"
/db_xref="GeneID:6795007"
/translation="MFIKPKYGTENLMSDYKSTLNLPETGFPMRGDLAKREPGMLARW
TDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGFDSP
YVPGWDCHGLPIELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLG
DWSHPYLTMDFKTEANIIRALGRIIKNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKT
SPSIDVAFRAVDQDAVKAKFGLPGVSGPVSLVIWTTTPWTLPANRAISLAPDFDYALV
QIDGQAVILAKDLVESVMQRIGAAEYTILGTVKGAELELLRFTHPFMGFDVPAILGDH
VTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGAYLPGTYPTLDGVNVFKAN
DIVIELLKEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDKEGLRQQSLKEI
KGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKETQELLPIERTLAAME
EVAKRVEVDGIQAWWDLDPKEILGEDADQYEKVPDTLDVWFDSGSTSYSVVDARPEFA
GHAADMYLEGSDQHRGWFMSSLMISVAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNT
VSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNG
FNPATDMVKPEEMVVLDRWAVGCAKTAQQEILKAYEAYDFHEVVQRLMRFCSVEMGSF
YLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREK
YVFTGEWYDGLFGLEENEEFNDAFWDDVRYIKDQVNKELENQKANGIKSNLEAKVTLK
YADDANGTIKKLKLLGEEVRFIFITSQFVISEQAGGIDDENIQYNAGNTTVQAVVTRA
EGDKCPRCWHYTTDVGKVAEHADICGRCVSNIAGNGEQRKFA"
misc_feature 53852..56659
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK05743"
/db_xref="CDD:235588"
misc_feature 53996..>54412
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:241550"
misc_feature 54044..54055
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="active site"
/db_xref="CDD:173912"
misc_feature 54044..54055
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature order(54044..54046,54053..54055)
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature <55085..55777
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature order(55202..55204,55457..55459,55466..55468,55538..55552,
55556..55558,55562..55564,55631..55645,55655..55672,
55766..55768)
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="active site"
/db_xref="CDD:173909"
misc_feature 55661..55675
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature 55775..56317
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_BEm; cd07960"
/db_xref="CDD:153414"
misc_feature order(55784..55786,55796..55798,55805..55807,55817..55819,
55826..55828,55835..55840,55982..55984,55991..55996,
56003..56008,56015..56017,56030..56032,56042..56044,
56051..56053,56306..56308,56315..56317)
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153414"
misc_feature order(55826..55828,55835..55837)
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="anticodon binding site; other site"
/db_xref="CDD:153414"
misc_feature 56561..56650
/gene="ileS"
/locus_tag="SeAg_B0051"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene 56686..57186
/gene="lspA"
/locus_tag="SeAg_B0052"
/db_xref="GeneID:6794545"
CDS 56686..57186
/gene="lspA"
/locus_tag="SeAg_B0052"
/EC_number="3.4.23.36"
/note="lipoprotein signal peptidase; integral membrane
protein that removes signal peptides from prolipoproteins
during lipoprotein biosynthesis"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_002145028.1"
/db_xref="GI:197247967"
/db_xref="GeneID:6794545"
/translation="MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVGLFP
SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVILLVMMYRSKATQKLNNIAYA
LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADSAICIGAALIVLEGFLPKP
TAKEQA"
misc_feature 56689..57162
/gene="lspA"
/locus_tag="SeAg_B0052"
/note="lipoprotein signal peptidase; Reviewed; Region:
lspA; PRK00376"
/db_xref="CDD:234739"
gene 57200..57331
/locus_tag="SeAg_B0053"
/db_xref="GeneID:6797214"
CDS 57200..57331
/locus_tag="SeAg_B0053"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145029.1"
/db_xref="GI:197249530"
/db_xref="GeneID:6797214"
/translation="MALIRFCRPDKRSAIRQTWCRMAVKTPYPAYGFIVLYASGQNT"
gene 57341..57790
/gene="fkpB"
/locus_tag="SeAg_B0054"
/db_xref="GeneID:6792872"
CDS 57341..57790
/gene="fkpB"
/locus_tag="SeAg_B0054"
/EC_number="5.2.1.8"
/note="identified by match to protein family HMM PF00254"
/codon_start=1
/transl_table=11
/product="FKBP-type peptidylprolyl isomerase"
/protein_id="YP_002145030.1"
/db_xref="GI:197249034"
/db_xref="GeneID:6792872"
/translation="MSKSVQSNSAILVHFTLKLDDGSTAESTRNNGKPALFRLGDTSL
SEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMAAGEPEVGAIMLFT
AMDGSEMPGVIREINGDSITVDFNHPLAGHTVHFDIEVLEIDPALEA"
misc_feature 57341..57787
/gene="fkpB"
/locus_tag="SeAg_B0054"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional; Region: PRK15095"
/db_xref="CDD:185051"
misc_feature 57347..57784
/gene="fkpB"
/locus_tag="SeAg_B0054"
/note="FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover,
chaperones]; Region: SlpA; COG1047"
/db_xref="CDD:31248"
gene 57793..58743
/gene="ispH"
/locus_tag="SeAg_B0055"
/db_xref="GeneID:6797329"
CDS 57793..58743
/gene="ispH"
/locus_tag="SeAg_B0055"
/EC_number="1.17.1.2"
/note="catalyzes the conversion of
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP); functions in the nonmevalonate
isoprenoid biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-enyl diphosphate
reductase"
/protein_id="YP_002145031.1"
/db_xref="GI:197251022"
/db_xref="GeneID:6797329"
/translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
VVDSLRQRGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVWTLNVKNEGK
LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVL
VVGSKNSSNSNRLAELAQRMGRTAFLIDDAADIQEAWVKEAACVGVTAGASAPDILVQ
NVIARLREFGGGEAVTLEGREENIVFEVPKELRVDVREVE"
misc_feature 57793..58695
/gene="ispH"
/locus_tag="SeAg_B0055"
/note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
Reviewed; Region: ispH; PRK01045"
/db_xref="CDD:234893"
misc_feature 57793..58677
/gene="ispH"
/locus_tag="SeAg_B0055"
/note="4-Hydroxy-3-methylbut-2-enyl diphosphate reductase
IspH [Lipid metabolism]; Region: lytB; COG0761"
/db_xref="CDD:223832"
gene complement(58855..58983)
/locus_tag="SeAg_B0056"
/db_xref="GeneID:6793591"
CDS complement(58855..58983)
/locus_tag="SeAg_B0056"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145032.1"
/db_xref="GI:197250613"
/db_xref="GeneID:6793591"
/translation="MASNVGNPYFILPISLIPVGITTKKPATIVLVFQMNSKKVGH"
gene 58994..60145
/locus_tag="SeAg_B0057"
/db_xref="GeneID:6793986"
CDS 58994..60145
/locus_tag="SeAg_B0057"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145033.1"
/db_xref="GI:197247355"
/db_xref="GeneID:6793986"
/translation="MDAASATVLELPAWERNYTGTIAGKPVNVNITRFGNTLYGYYCY
EPCNQHKAAIVLRGSLQDKRVHLEERVKALSGYWNAEISSSEIKGEWTSADKKRHFPV
ALIYLKPKNSPDIVLVTNTNDAGGYDPSKEIDCGNTPAISAIKLYRDGKLIQTLDTAS
VGTCSPFMPQWGDVNFDGYPDLSIVTELLAGPDAPVQTWLYDPAKQRYVDAPASYQEI
TSPEIDAEHKQIVSYWRGGCCSHGVNVYRWKGKTIELIDRGESYFQPVISKGKMYNCY
MTPSYADGRIIYPLVRKNGHLTPPLSLDGTCQPFWLIGNVRTVIQAEKPGAEPESLEI
QWQENKASPGRFCPLVPFIEGDKLSPRLVTDDDVPDTCISRAEYEDIKQ"
gene 60161..61081
/locus_tag="SeAg_B0058"
/db_xref="GeneID:6793899"
CDS 60161..61081
/locus_tag="SeAg_B0058"
/EC_number="3.2.-.-"
/note="catalyzes the hydrolysis of both purine and
pyrimidine ribonucleosides"
/codon_start=1
/transl_table=11
/product="ribonucleoside hydrolase RihC"
/protein_id="YP_002145034.1"
/db_xref="GI:197250636"
/db_xref="GeneID:6793899"
/translation="MTASLHIILDTDPGIDDAAAIAAALFAPELDLQLITTVAGNVSV
EKTTRNALQLLHFWDADVPLAQGAATPLLRPLRDAAYVHGESGMEGYDFVDHQRQPLA
KPAFIAIRDVLMNAPEPMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNF
TPNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDFLSKLPALNRTGKMLHS
LFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGQYTAGTTVVDIEGR
LGQPANAQVALALDVDGFRQWVAEVFACAP"
misc_feature 60179..61060
/locus_tag="SeAg_B0058"
/note="nuc_hydro_IU_UC_XIUA: inosine-uridine preferring,
xanthosine-inosine-uridine-adenosine-preferring and,
uridine-cytidine preferring nucleoside hydrolases.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the...; Region:
nuc_hydro_IU_UC_XIUA; cd02651"
/db_xref="CDD:29579"
misc_feature order(60194..60196,60206..60211,60281..60283,60404..60406,
60533..60535,60635..60637,60653..60655,60659..60661,
60866..60868)
/locus_tag="SeAg_B0058"
/note="active site"
/db_xref="CDD:29579"
misc_feature order(60374..60376,60566..60568,60689..60691,60935..60937,
60941..60946,60953..60955)
/locus_tag="SeAg_B0058"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:29579"
gene complement(61103..61789)
/locus_tag="SeAg_B0059"
/db_xref="GeneID:6794009"
CDS complement(61103..61789)
/locus_tag="SeAg_B0059"
/note="identified by match to protein family HMM PF00072"
/codon_start=1
/transl_table=11
/product="transcriptional regulatory protein CitB"
/protein_id="YP_002145035.1"
/db_xref="GI:197248621"
/db_xref="GeneID:6794009"
/translation="MDSITTLIVEDEPMLAEILVDTIKLFPQFSIVGIADKLESAKKQ
IRLYQPQLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGVFD
YLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQTAEPNSGLRGI
DENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLEQGVKNNFLEAEISYGKVG
RPERLYRGKV"
misc_feature complement(61106..61780)
/locus_tag="SeAg_B0059"
/note="Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms]; Region:
CitB; COG4565"
/db_xref="CDD:34203"
misc_feature complement(61430..61771)
/locus_tag="SeAg_B0059"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(61469..61474,61481..61483,61538..61540,
61598..61600,61622..61624,61757..61762))
/locus_tag="SeAg_B0059"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(61622..61624)
/locus_tag="SeAg_B0059"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(61598..61606,61610..61615))
/locus_tag="SeAg_B0059"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(61466..61474)
/locus_tag="SeAg_B0059"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(61301..61393)
/locus_tag="SeAg_B0059"
/note="Transcriptional regulator; Region: CitT; pfam12431"
/db_xref="CDD:152865"
gene complement(61791..63449)
/locus_tag="SeAg_B0060"
/db_xref="GeneID:6795835"
CDS complement(61791..63449)
/locus_tag="SeAg_B0060"
/EC_number="2.7.13.3"
/note="identified by match to protein family HMM PF02518"
/codon_start=1
/transl_table=11
/product="sensor kinase DpiB"
/protein_id="YP_002145036.1"
/db_xref="GI:197249131"
/db_xref="GeneID:6795835"
/translation="MQENTVIKYLTTNMFIREITHWFARRSFQNRIFLLILFTSTIVM
LAITWYLTDITKERLHYQVGQRALIQAMQISAMPELVEAVEAHDLSRIKALIDPMRSF
SDATYITVGNEKGQRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGK
SPIQDSTGKVIGIVSVGYTLEQLESWLNLQISSLLFPMALLLLVLLYCARRFSLHIKK
QMLNMEPQQLSQLLIQQSVLFESVFEGLIAIDSHHRITAINQTARRLLNLSQPESELI
GYAIHHVVLPEAFFYDAPQKNKKDEIVTFNQMKVIASRMAVIIDNQPQGWVISFRNKD
DINTLSLQLSQVRQYADNLRAVQHEHRNLISTIAGLLFLKRYDNALALIQQQSESHQK
VLDFISHNFRDHHLAGLLIGKYYRAKELGLELIFDPSSFVEHLPSSLSHNEWISIVGN
LLDNAYNATLLNSEGSRQIECLINSEGNEVIIEVADQGCGIDENIRQHIFERGVTTHN
NGDHGIGLWLVHSYVKQANGDIIVDNNNPFGTIFTLYIPFTREE"
misc_feature complement(61794..63395)
/locus_tag="SeAg_B0060"
/note="Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms]; Region: CitA; COG3290"
/db_xref="CDD:33099"
misc_feature complement(<62589..62735)
/locus_tag="SeAg_B0060"
/note="PAS domain; Region: PAS; smart00091"
/db_xref="CDD:197512"
misc_feature complement(61812..62114)
/locus_tag="SeAg_B0060"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(61824..61826,61830..61835,61848..61850,
61854..61856,61902..61913,61977..61982,61986..61988,
61992..61994,61998..62000,62079..62081,62088..62090,
62100..62102))
/locus_tag="SeAg_B0060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(62088..62090)
/locus_tag="SeAg_B0060"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(61905..61907,61911..61913,61980..61982,
61986..61988))
/locus_tag="SeAg_B0060"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(63545..64846)
/locus_tag="SeAg_B0061"
/db_xref="GeneID:6794262"
CDS complement(63545..64846)
/locus_tag="SeAg_B0061"
/EC_number="4.1.1.3"
/note="identified by match to protein family HMM PF03977;
match to protein family HMM TIGR01109"
/codon_start=1
/transl_table=11
/product="oxaloacetate decarboxylase subunit beta"
/protein_id="YP_002145037.1"
/db_xref="GI:197250360"
/db_xref="GeneID:6794262"
/translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL
LPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEALALAL
PSVQSQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL
LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL
LGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLMLV
ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF
LQPQTLGILLLGVIAFGIGTAAGVLMAKLMNLCSKNKINPLIGSAGVSAVPMAARVSN
KVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM"
misc_feature complement(63548..64846)
/locus_tag="SeAg_B0061"
/note="oxaloacetate decarboxylase subunit beta;
Provisional; Region: PRK15476"
/db_xref="CDD:185373"
gene complement(64862..66628)
/gene="oadA"
/locus_tag="SeAg_B0062"
/db_xref="GeneID:6795084"
CDS complement(64862..66628)
/gene="oadA"
/locus_tag="SeAg_B0062"
/EC_number="4.1.1.3"
/note="catalyzes the formation of pyruvate from
oxaloacetate"
/codon_start=1
/transl_table=11
/product="oxaloacetate decarboxylase"
/protein_id="YP_002145038.1"
/db_xref="GI:197250006"
/db_xref="GeneID:6795084"
/translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAQLDDVGYGSLEC
WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE
RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE
QLLETGVDSIAIKDMSGILTPMAAYELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI
EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY
HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIP
LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGA
PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRH
NPAAFEPVPQAETAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAVPAS
APAAAAPAGAGTPVTAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQAGT
VRGIAVKSGDAVSVGDTLMTLA"
misc_feature complement(64865..66628)
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="oxaloacetate decarboxylase; Provisional; Region:
PRK14040"
/db_xref="CDD:184472"
misc_feature complement(65792..66616)
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="Pyruvate carboxylase and Transcarboxylase 5S,
carboxyltransferase domain; Region: DRE_TIM_PC_TC_5S;
cd07937"
/db_xref="CDD:163675"
misc_feature complement(order(65915..65917,66017..66019,66023..66025,
66110..66112,66200..66202,66383..66385,66389..66391,
66488..66490,66500..66502,66584..66586,66593..66598))
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="active site"
/db_xref="CDD:163675"
misc_feature complement(order(66500..66502,66593..66598))
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="catalytic residues [active]"
/db_xref="CDD:163675"
misc_feature complement(order(66017..66019,66023..66025,66110..66112,
66593..66595))
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163675"
misc_feature complement(order(65840..65842,65882..65884,65900..65902,
65930..65932,65936..65941,65981..65986,65996..65998,
66002..66004,66008..66010,66083..66085,66089..66091))
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="homodimer binding site [polypeptide binding]; other
site"
/db_xref="CDD:163675"
misc_feature complement(64868..65044)
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(64943..64945,64964..64972,64997..64999))
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(64967..64969)
/gene="oadA"
/locus_tag="SeAg_B0062"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(66644..66883)
/locus_tag="SeAg_B0063"
/db_xref="GeneID:6796947"
CDS complement(66644..66883)
/locus_tag="SeAg_B0063"
/EC_number="4.1.1.3"
/note="catalyzes the decarboxylation of oxaloacetate to
form pyruvate and carbon dioxide"
/codon_start=1
/transl_table=11
/product="oxaloacetate decarboxylase subunit gamma"
/protein_id="YP_002145039.1"
/db_xref="GI:197249120"
/db_xref="GeneID:6796947"
/translation="MNEAVLLGEGFTLMFLGMGFVLSFLFLLIFAIRGMSAVITRFFP
EPVAAPAPRAVPAVDDFTRLKPVIAAAIHHHRLNA"
misc_feature complement(66656..66883)
/locus_tag="SeAg_B0063"
/note="oxaloacetate decarboxylase subunit gamma;
Provisional; Region: PRK02919"
/db_xref="CDD:179500"
gene complement(67042..68382)
/locus_tag="SeAg_B0064"
/db_xref="GeneID:6794251"
CDS complement(67042..68382)
/locus_tag="SeAg_B0064"
/note="identified by match to protein family HMM PF03390;
match to protein family HMM TIGR00783"
/codon_start=1
/transl_table=11
/product="citrate-sodium symporter"
/protein_id="YP_002145040.1"
/db_xref="GI:197248761"
/db_xref="GeneID:6794251"
/translation="MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFY
NAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQK
EIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGI
VIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTI
ANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLST
TCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLADFFSK
QLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESS
ITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMV"
misc_feature complement(67045..68355)
/locus_tag="SeAg_B0064"
/note="Na+/citrate symporter [Energy production and
conversion]; Region: CitS; COG3493"
/db_xref="CDD:33296"
gene 68639..69670
/gene="citC"
/locus_tag="SeAg_B0065"
/db_xref="GeneID:6795650"
CDS 68639..69670
/gene="citC"
/locus_tag="SeAg_B0065"
/EC_number="6.2.1.22"
/note="identified by match to protein family HMM PF00583;
match to protein family HMM PF08218; match to protein
family HMM TIGR00124; match to protein family HMM
TIGR00125"
/codon_start=1
/transl_table=11
/product="[citrate (pro-3S)-lyase] ligase"
/protein_id="YP_002145041.1"
/db_xref="GI:197247805"
/db_xref="GeneID:6795650"
/translation="MNLIFKRIYLQKDVLRRESVAMFLDGVGLALEDDCEIAVCAYWQ
GEIVGCGSLAGNVLKCIAVSPVLQGEGLSLKLLTELLTLAYELNRSELFLFTKPQNRL
LFSGAGFWPIAQAGELAVLMENSSERLARFCRQLALYRQPGKTIGAIVMNANPFTLGH
RYLVEQAAAACDWLHLFVVKEDASFFSYTDRWALIEQGIAGIDNVTLHSGSAYMISRA
TFPGYFLKEKGVVDDCHCQIDLQLFREHLAPALGVTHRFVGSEPFCPLTCAYNQRMHD
ILHDPKRSGPVIEVVELARVEKNGAAISASRVRKLYSERNWSAISALVPAGTLAYLQR
HAARHTETI"
misc_feature 68639..69667
/gene="citC"
/locus_tag="SeAg_B0065"
/note="Citrate lyase synthetase [Energy production and
conversion]; Region: CitC; COG3053"
/db_xref="CDD:32867"
misc_feature 68723..69634
/gene="citC"
/locus_tag="SeAg_B0065"
/note="Citrate lyase ligase; Region: Citrate_lyase_ligase;
cd02169"
/db_xref="CDD:173920"
misc_feature order(69083..69097,69107..69109,69116..69118,69173..69178,
69410..69415,69419..69421,69545..69556,69563..69565)
/gene="citC"
/locus_tag="SeAg_B0065"
/note="putative active site [active]"
/db_xref="CDD:173920"
misc_feature 69107..69118
/gene="citC"
/locus_tag="SeAg_B0065"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173920"
gene 69700..69993
/gene="citD"
/locus_tag="SeAg_B0066"
/db_xref="GeneID:6793297"
CDS 69700..69993
/gene="citD"
/locus_tag="SeAg_B0066"
/EC_number="4.1.3.6"
/note="acyl carrier protein; with CitE and CitF catalyzes
the formation of oxaloacetate from citrate"
/codon_start=1
/transl_table=11
/product="citrate lyase subunit gamma"
/protein_id="YP_002145042.1"
/db_xref="GI:197247457"
/db_xref="GeneID:6793297"
/translation="MKIIKDALAGTLESSDVMIRIGPSSEPGIRLELESLVKQQFGAA
IEQVVRETLAKLGVERALVSVDDKGALECILRARVQAAALRAAEQTEIQWSAL"
misc_feature 69700..69990
/gene="citD"
/locus_tag="SeAg_B0066"
/note="Citrate lyase, gamma subunit [Energy production and
conversion]; Region: CitD; COG3052"
/db_xref="CDD:225594"
gene 69990..70859
/gene="citE"
/locus_tag="SeAg_B0067"
/db_xref="GeneID:6796120"
CDS 69990..70859
/gene="citE"
/locus_tag="SeAg_B0067"
/EC_number="4.1.3.6"
/note="identified by match to protein family HMM PF03328;
match to protein family HMM TIGR01588"
/codon_start=1
/transl_table=11
/product="citrate (pro-3S)-lyase subunit beta"
/protein_id="YP_002145043.1"
/db_xref="GI:197251141"
/db_xref="GeneID:6796120"
/translation="MRPRRSMLFIPGANAAMLSTSFVYGADAVMFDLEDAVALREKDT
ARLLVHHALQHPFYQDVEKVVRINPLNTPFGLADLEAVVRGGADIVRLPKTDSKNDVL
ELEAQVERIERECGREVGSTRLMAAIESAKGVVNAVDIATSSPRMVAIALAAFDYVMD
MGTSRGDGTELFYARCAVLHAARVAGIAAYDVVWSDINNEEGFLKEVQLAKGLGFNGK
SLVNPRQIELLHQAYSPTRKEVEHAYEVIAAAEEAESRGLGVVSLNGKMIDGPIIDHA
RKVVALSASGIRD"
misc_feature 69993..70850
/gene="citE"
/locus_tag="SeAg_B0067"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene 70870..72390
/gene="citF"
/locus_tag="SeAg_B0068"
/db_xref="GeneID:6793798"
CDS 70870..72390
/gene="citF"
/locus_tag="SeAg_B0068"
/EC_number="2.8.3.10"
/note="identified by match to protein family HMM PF04223;
match to protein family HMM TIGR01584"
/codon_start=1
/transl_table=11
/product="citrate lyase subunit alpha"
/protein_id="YP_002145044.1"
/db_xref="GI:197249273"
/db_xref="GeneID:6793798"
/translation="MKETVTMLNQQYVVPEGLQPYQGVTANSPWLASETEKRRRKICD
SLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWP
LIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAF
LGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQ
VDLIVQVDEVGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGG
ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSFDGDAARSLA
QNPHHIEISTNQYANPGSKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGG
HSDTAAGADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLL
DNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQVKG"
misc_feature 70870..72387
/gene="citF"
/locus_tag="SeAg_B0068"
/note="Citrate lyase, alpha subunit [Energy production and
conversion]; Region: CitF; COG3051"
/db_xref="CDD:32865"
misc_feature <71944..72288
/gene="citF"
/locus_tag="SeAg_B0068"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene 72390..72941
/gene="citX"
/locus_tag="SeAg_B0069"
/db_xref="GeneID:6795274"
CDS 72390..72941
/gene="citX"
/locus_tag="SeAg_B0069"
/EC_number="2.7.7.61"
/note="identified by match to protein family HMM PF03802;
match to protein family HMM TIGR03124"
/codon_start=1
/transl_table=11
/product="holo-ACP synthase CitX"
/protein_id="YP_002145045.1"
/db_xref="GI:197247435"
/db_xref="GeneID:6795274"
/translation="MKGTDLLYQGQAVTLEEMLQARDKRAARQRQALNCYRLPLISLT
LVAPGAVKNSAVWRRVADYAIAEILALCEQKEWVNVWEMQVNERSGPEWMAAVCAPAM
ALKQHMSTLEMRHPLGRLWDIDIIDSDGKSLSRRELGHPARPCLICQQDAHLCARGKH
HTLDLLLDEIARRIECYERERCD"
misc_feature 72390..72938
/gene="citX"
/locus_tag="SeAg_B0069"
/note="Phosphoribosyl-dephospho-CoA transferase (holo-ACP
synthetase) [Coenzyme metabolism / Lipid metabolism];
Region: CitX; COG3697"
/db_xref="CDD:33493"
gene 72919..73827
/gene="citG"
/locus_tag="SeAg_B0070"
/db_xref="GeneID:6796097"
CDS 72919..73827
/gene="citG"
/locus_tag="SeAg_B0070"
/EC_number="2.7.8.25"
/note="identified by match to protein family HMM PF01874;
match to protein family HMM TIGR03125"
/codon_start=1
/transl_table=11
/product="triphosphoribosyl-dephospho-CoA synthase CitG"
/protein_id="YP_002145046.1"
/db_xref="GI:197247849"
/db_xref="GeneID:6796097"
/translation="MNVSVVTERRTPAYSSLAAGELNGLVARALLTEARLTPKPGLVD
IRNSGAHRDMDLAAFERSTTAIAPWMEKFFIMGNNTAAVAAENVLVMLRPLGMACEND
MLQATNGVNTHRGAIFAFGLLSAAIGRLLARGEPLEQNRICDQVARLSRNIVAHELSA
KKAGKLTKSETHFQCYGLSGARGEAESGFRTVRTQALPVFNRVVQEHDDTHLALLQTL
LHLMAWNDDTNLVSRGGLEGLYYVQQQAQKLLWQGGVLVEGGIEAMQSLDDELILRNL
SPGGSADLLAVTWFLSHFPAGSLYPE"
misc_feature 72979..73800
/gene="citG"
/locus_tag="SeAg_B0070"
/note="triphosphoribosyl-dephospho-CoA synthase CitG;
Region: citrate_citG; TIGR03125"
/db_xref="CDD:132169"
gene 74007..74828
/gene="dapB"
/locus_tag="SeAg_B0071"
/db_xref="GeneID:6794793"
CDS 74007..74828
/gene="dapB"
/locus_tag="SeAg_B0071"
/EC_number="1.3.1.26"
/note="'catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis'"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_002145047.1"
/db_xref="GI:197251291"
/db_xref="GeneID:6794793"
/translation="MHEAQIRVAIAGAGGRMGRQLIQAAMAMEGVQLGAALEREGSSL
LGSDAGELAGAGKSGVIVQSSLEAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIG
TTGFDDAGKQAIREASQEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYSDIEIIEAHH
RHKVDAPSGTALAMGEAIAGALDKNLKDCAVYSREGYTGERVPGTIGFATVRAGDIVG
EHTAMFADIGERVEITHKASSRMTFANGALRSALWLKTKKNGLFDMRDVLGLDVL"
misc_feature 74022..74816
/gene="dapB"
/locus_tag="SeAg_B0071"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature 74022..74393
/gene="dapB"
/locus_tag="SeAg_B0071"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature 74400..74810
/gene="dapB"
/locus_tag="SeAg_B0071"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(75287..75478)
/locus_tag="SeAg_B0072"
/db_xref="GeneID:6793456"
CDS complement(75287..75478)
/locus_tag="SeAg_B0072"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145048.1"
/db_xref="GI:197251772"
/db_xref="GeneID:6793456"
/translation="MTIENACASVSSQKTGWHDKKWTKWSNFTLKQQKTTIKIHLIAI
NTIKCIKNSKLSKLTTKTF"
gene 75692..76840
/gene="carA"
/locus_tag="SeAg_B0073"
/db_xref="GeneID:6793666"
CDS 75692..76840
/gene="carA"
/locus_tag="SeAg_B0073"
/EC_number="6.3.5.5"
/note="catalyzes production of carbamoyl phosphate from
bicarbonate and glutamine in pyrimidine and arginine
biosynthesis pathways; forms an octamer composed of four
CarAB dimers"
/codon_start=1
/transl_table=11
/product="carbamoyl phosphate synthase small subunit"
/protein_id="YP_002145049.1"
/db_xref="GI:197249998"
/db_xref="GeneID:6793666"
/translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
DPSYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAK
EVTTAETYRWTQGSWTLKDGLPEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTV
VPAQTSAEEVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPLFGICLGHQLLA
LASGAKTVKMKFGHHGGNHPVKDMDRNVVMITAQNHGFAVDEDSLPANLRVTHKSLFD
GTLQGIHRTDKPAFCFQGHPEASPGPHDAAPLFDHFIELIEQYRQSAK"
misc_feature 75692..76813
/gene="carA"
/locus_tag="SeAg_B0073"
/note="carbamoyl phosphate synthase small subunit;
Reviewed; Region: PRK12564"
/db_xref="CDD:183597"
misc_feature 75698..76087
/gene="carA"
/locus_tag="SeAg_B0073"
/note="Carbamoyl-phosphate synthase small chain, CPSase
domain; Region: CPSase_sm_chain; smart01097"
/db_xref="CDD:198165"
misc_feature 76271..76804
/gene="carA"
/locus_tag="SeAg_B0073"
/note="Small chain of the glutamine-dependent form of
carbamoyl phosphate synthase, CPSase II; Region:
GATase1_CPSase; cd01744"
/db_xref="CDD:153215"
misc_feature order(76496..76498,76748..76750,76754..76756)
/gene="carA"
/locus_tag="SeAg_B0073"
/note="catalytic site [active]"
/db_xref="CDD:153215"
misc_feature order(76571..76573,76577..76579,76598..76600,76604..76606,
76685..76687,76763..76768,76772..76777)
/gene="carA"
/locus_tag="SeAg_B0073"
/note="subunit interface [polypeptide binding]; other
site"
/db_xref="CDD:153215"
gene 76859..80086
/gene="carB"
/locus_tag="SeAg_B0074"
/db_xref="GeneID:6796939"
CDS 76859..80086
/gene="carB"
/locus_tag="SeAg_B0074"
/EC_number="6.3.5.5"
/note="four CarB-CarA dimers form the carbamoyl phosphate
synthetase holoenzyme that catalyzes the production of
carbamoyl phosphate; CarB is responsible for the
amidotransferase activity"
/codon_start=1
/transl_table=11
/product="carbamoyl phosphate synthase large subunit"
/protein_id="YP_002145050.1"
/db_xref="GI:197250511"
/db_xref="GeneID:6796939"
/translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEALAVAA
DVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM
EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVD
GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGV
REAEIRKLRDQYNLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSVDRDKIMVLG
GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
DRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
AVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKA
TGVPLAKVAARVMAGKSLTEQGVTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
GEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELD
ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIR
RSALQYKVHYDTTLNGGFATTMALNADATEKVTSVQEMHAQIKKS"
misc_feature 76859..80065
/gene="carB"
/locus_tag="SeAg_B0074"
/note="carbamoyl phosphate synthase large subunit;
Reviewed; Region: carB; PRK05294"
/db_xref="CDD:179998"
misc_feature 76877..77224
/gene="carB"
/locus_tag="SeAg_B0074"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 77228..77782
/gene="carB"
/locus_tag="SeAg_B0074"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:205713"
misc_feature 78128..78499
/gene="carB"
/locus_tag="SeAg_B0074"
/note="Carbamoyl-phosphate synthetase large chain,
oligomerisation domain; Region: CPSase_L_D3; pfam02787"
/db_xref="CDD:202396"
misc_feature 78536..78862
/gene="carB"
/locus_tag="SeAg_B0074"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 78869..79393
/gene="carB"
/locus_tag="SeAg_B0074"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:205713"
misc_feature 79685..80014
/gene="carB"
/locus_tag="SeAg_B0074"
/note="Methylglyoxal synthase-like domain from type II
glutamine-dependent carbamoyl phosphate synthetase (CSP).
CSP, a CarA and CarB heterodimer, catalyzes the production
of carbamoyl phosphate which is subsequently employed in
the metabolic pathways...; Region: MGS_CPS_II; cd01424"
/db_xref="CDD:29636"
misc_feature order(79700..79702,79718..79720,79778..79780,79784..79789,
79835..79837,79901..79909)
/gene="carB"
/locus_tag="SeAg_B0074"
/note="IMP binding site; other site"
/db_xref="CDD:29636"
misc_feature order(79781..79783,79793..79795,79817..79819,79823..79828,
79832..79834,79868..79870)
/gene="carB"
/locus_tag="SeAg_B0074"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29636"
misc_feature order(79976..79978,79991..79993,80003..80005)
/gene="carB"
/locus_tag="SeAg_B0074"
/note="interdomain contacts; other site"
/db_xref="CDD:29636"
misc_feature 79976..79984
/gene="carB"
/locus_tag="SeAg_B0074"
/note="partial ornithine binding site; other site"
/db_xref="CDD:29636"
gene 80360..80755
/locus_tag="SeAg_B0075"
/note="transcriptional activatory protein CaiF; this gene
contains a frame shift which may be the result of
sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6796723"
gene complement(80832..81428)
/locus_tag="SeAg_B0076"
/db_xref="GeneID:6797260"
CDS complement(80832..81428)
/locus_tag="SeAg_B0076"
/note="involved in the synthesis of a cofactor required
for carnitine dehydratase and carnitine racemase
activities"
/codon_start=1
/transl_table=11
/product="carnitine operon protein CaiE"
/protein_id="YP_002145051.1"
/db_xref="GI:197248515"
/db_xref="GeneID:6797260"
/translation="MSYYAFEGLIPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLR
GDYGRLILEAGSNLQDGCIMHGYCDTDTIVHENGHIGHGAILHGCVVGRDALVGMNSV
IMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQ
DLAIRCRTGLSETKPLTQVEENRPRLKGTTDVKPKSAQ"
misc_feature complement(80841..81428)
/locus_tag="SeAg_B0076"
/note="carnitine operon protein CaiE; Provisional; Region:
PRK13627"
/db_xref="CDD:184189"
misc_feature complement(80934..81398)
/locus_tag="SeAg_B0076"
/note="paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the paa
gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to...;
Region: LbH_paaY_like; cd04745"
/db_xref="CDD:100058"
misc_feature complement(order(81132..81134,81168..81170,81174..81185,
81234..81236,81246..81251,81291..81293,81297..81299,
81303..81308,81315..81317,81351..81353,81360..81365,
81369..81371,81375..81377))
/locus_tag="SeAg_B0076"
/note="putative trimer interface [polypeptide binding];
other site"
/db_xref="CDD:100058"
misc_feature complement(order(81168..81170,81183..81185,81234..81236))
/locus_tag="SeAg_B0076"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:100058"
gene complement(81538..82323)
/locus_tag="SeAg_B0077"
/db_xref="GeneID:6794585"
CDS complement(81538..82323)
/locus_tag="SeAg_B0077"
/EC_number="4.2.1.-"
/note="catalyzes the dehydration of L-carnitinyl-CoA to
crotonobetainyl-CoA"
/codon_start=1
/transl_table=11
/product="carnitinyl-CoA dehydratase"
/protein_id="YP_002145052.1"
/db_xref="GI:197251288"
/db_xref="GeneID:6794585"
/translation="MSESLHLTRNGPILEITLDRPKANAIDAKTSFAMGEAFLNFRDD
PELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN
GYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVM
TGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAALKEIYRATSEMP
VEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKGR"
misc_feature complement(81541..82323)
/locus_tag="SeAg_B0077"
/note="carnitinyl-CoA dehydratase; Provisional; Region:
PRK03580"
/db_xref="CDD:179599"
misc_feature complement(81736..82311)
/locus_tag="SeAg_B0077"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(81922..81924,81931..81936,82000..82008,
82012..82014,82126..82140,82150..82152,82249..82251,
82255..82257))
/locus_tag="SeAg_B0077"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(82000..82002,82132..82134))
/locus_tag="SeAg_B0077"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(81736..81741,81748..81750,81793..81795,
81802..81804,81835..81837,81844..81849,81853..81858,
81862..81867,81880..81885,81889..81897,81901..81903,
81919..81930,81964..81975,82036..82038,82060..82062))
/locus_tag="SeAg_B0077"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene complement(82377..83930)
/gene="caiC"
/locus_tag="SeAg_B0078"
/db_xref="GeneID:6793453"
CDS complement(82377..83930)
/gene="caiC"
/locus_tag="SeAg_B0078"
/EC_number="6.2.1.-"
/note="identified by match to protein family HMM PF00501"
/codon_start=1
/transl_table=11
/product="crotonobetaine/carnitine-CoA ligase"
/protein_id="YP_002145053.1"
/db_xref="GI:197247510"
/db_xref="GeneID:6793453"
/translation="MDIVGGQNLRQMWDDLAGVYGDKTALIFESCEGIVRQFSYASLN
EEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESA
WILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQSRQ
STTLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVYM
TVMPAFHIDCQCTAAMPAFSAGSTFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTL
MVQPAAPTDRQHHLREVMFYLNLSEQEKDDFTERFGVRLLTSYGMTETIVGIIGDRPG
DKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAR
ALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIV
VVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS
GKIIKKNLK"
misc_feature complement(82380..83930)
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="putative crotonobetaine/carnitine-CoA ligase;
Validated; Region: caiC; PRK08008"
/db_xref="CDD:181195"
misc_feature complement(<83577..83825)
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:213459"
misc_feature complement(82380..83411)
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="Uncharacterized subfamily of fatty acid CoA ligase
(FACL); Region: FACL_DitJ_like; cd05934"
/db_xref="CDD:213300"
misc_feature complement(order(83364..83369,83373..83390,83397..83399))
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213300"
misc_feature complement(order(82401..82403,82641..82643,82674..82676,
82683..82685,82719..82721,82965..82982,83040..83045,
83388..83390))
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="putative AMP binding site [chemical binding]; other
site"
/db_xref="CDD:213300"
misc_feature complement(order(82458..82460,82641..82652,82674..82676,
82683..82685,82719..82721,82965..82982,83040..83045,
83100..83102,83109..83114,83118..83120,83265..83270,
83388..83390))
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="putative active site [active]"
/db_xref="CDD:213300"
misc_feature complement(order(82458..82460,82476..82478,82644..82652,
83043..83045,83100..83102,83109..83114,83268..83270))
/gene="caiC"
/locus_tag="SeAg_B0078"
/note="putative CoA binding site [chemical binding]; other
site"
/db_xref="CDD:213300"
gene complement(83993..85213)
/locus_tag="SeAg_B0079"
/db_xref="GeneID:6793153"
CDS complement(83993..85213)
/locus_tag="SeAg_B0079"
/EC_number="2.8.3.-"
/note="'catalyzes formation of L-carnitinyl-CoA by
transfering the CoA moiety from gamma-butyrobetainyl-CoA,
also catalyzes the formation of crotonobetainyl-CoA by
transfer of CoA from gamma-butyrobetainyl-CoA or
L-carnitinyl-CoA to crotonobetaine'"
/codon_start=1
/transl_table=11
/product="crotonobetainyl-CoA:carnitine CoA-transferase"
/protein_id="YP_002145054.1"
/db_xref="GI:197250411"
/db_xref="GeneID:6793153"
/translation="MMNHLPMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWI
ENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAF
ARRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQ
PMPAFPYTADYFSGMTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFN
GGEICPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQINECFKDIGLAHILGTPEVP
EGTQLIHRVECPYGPLVEEKLDAWLATHTIADVQARFAELNIACAKVLTIPELEGNPQ
YVARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSEAD
IKELVGKGLAKVED"
misc_feature complement(83996..85210)
/locus_tag="SeAg_B0079"
/note="crotonobetainyl-CoA:carnitine CoA-transferase;
Provisional; Region: PRK03525"
/db_xref="CDD:179589"
misc_feature complement(84467..85006)
/locus_tag="SeAg_B0079"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:202268"
gene complement(85322..86464)
/gene="caiA"
/locus_tag="SeAg_B0080"
/db_xref="GeneID:6795136"
CDS complement(85322..86464)
/gene="caiA"
/locus_tag="SeAg_B0080"
/EC_number="1.3.99.-"
/note="catalyzes the reduction of crotonobetainyl-CoA to
gamma-butyrobetainyl-CoA"
/codon_start=1
/transl_table=11
/product="crotonobetainyl-CoA dehydrogenase"
/protein_id="YP_002145055.1"
/db_xref="GI:197251657"
/db_xref="GeneID:6795136"
/translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK
ALADMGIDSLLIPEEHGGLEAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT
QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSA
YTPYIVVMARDGASPDKPVYTEWFVDMSKAGIKVNKLEKLGLRMDSCCEITFDDVELD
EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRF
QLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQ
VLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR"
misc_feature complement(85325..86464)
/gene="caiA"
/locus_tag="SeAg_B0080"
/note="crotonobetainyl-CoA dehydrogenase; Validated;
Region: PRK03354"
/db_xref="CDD:179566"
misc_feature complement(85346..86446)
/gene="caiA"
/locus_tag="SeAg_B0080"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567"
/db_xref="CDD:173838"
misc_feature complement(order(85370..85372,85376..85378,85382..85390,
85994..85996,86000..86002,86093..86095,86099..86101,
86315..86317))
/gene="caiA"
/locus_tag="SeAg_B0080"
/note="active site"
/db_xref="CDD:173838"
gene complement(86499..88016)
/gene="caiT"
/locus_tag="SeAg_B0081"
/db_xref="GeneID:6796389"
CDS complement(86499..88016)
/gene="caiT"
/locus_tag="SeAg_B0081"
/note="catalyzes the exchange of L-carnitine for
gamma-butyrobetaine in carnitine metabolism"
/codon_start=1
/transl_table=11
/product="L-carnitine/gamma-butyrobetaine antiporter"
/protein_id="YP_002145056.1"
/db_xref="GI:197249408"
/db_xref="GeneID:6796389"
/translation="MKNEKKKSGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVF
SYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSA
AVLFWGSIEIYYYISTPPFGLEPNSTGAKEIGLAYSLFHWGPLPWATYSFLSVAFAYF
FFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTEC
MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV
SGASFIMNYFTDSVGMLLMHLPRMLFYTDAIGKGGFPQGWTVFYWAWWVIYAIQMSIF
LARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNILNIPQLIEQHGVAR
AIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRI
GWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKVHWKDK"
misc_feature complement(86505..88016)
/gene="caiT"
/locus_tag="SeAg_B0081"
/note="L-carnitine/gamma-butyrobetaine antiporter;
Provisional; Region: PRK03356"
/db_xref="CDD:179568"
gene 88158..88274
/locus_tag="SeAg_B0082"
/db_xref="GeneID:6793318"
CDS 88158..88274
/locus_tag="SeAg_B0082"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145057.1"
/db_xref="GI:197250163"
/db_xref="GeneID:6793318"
/translation="MILLSSSHFFALIILCLNFDFCFIYQLIGCGFLTFLSI"
gene 88244..88429
/locus_tag="SeAg_B0083"
/db_xref="GeneID:6797186"
CDS 88244..88429
/locus_tag="SeAg_B0083"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145058.1"
/db_xref="GI:197248396"
/db_xref="GeneID:6797186"
/translation="MWFFNFFKYLTFNIVEPANNIENFHIWHISFNIGEVRNTIESYE
YQCVTFSILVIKVLFPN"
gene 88497..89267
/gene="fixA"
/locus_tag="SeAg_B0084"
/db_xref="GeneID:6796442"
CDS 88497..89267
/gene="fixA"
/locus_tag="SeAg_B0084"
/note="'required for anaerobic carnitine reduction, may
act to transfer electrons to crotonobetaine reductase'"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein FixA"
/protein_id="YP_002145059.1"
/db_xref="GI:197248654"
/db_xref="GeneID:6796442"
/translation="MKIITCYKCVPDEQDIAINNADGTLDFSKADSKISQYDLNAIEA
ACQLKQQLGDAQVVAMSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTAS
ALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDSTLTVE
RELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPA
YSAQQVAAPKQRERQRVVIEGDGEEQIAAFVENLRKII"
misc_feature 88500..89117
/gene="fixA"
/locus_tag="SeAg_B0084"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:30169"
misc_feature order(88512..88517,88599..88601,88608..88610,88680..88682,
88848..88853,88857..88862,88875..88886)
/gene="fixA"
/locus_tag="SeAg_B0084"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:30169"
misc_feature 88584..89057
/gene="fixA"
/locus_tag="SeAg_B0084"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:201550"
gene 89283..90224
/gene="fixB"
/locus_tag="SeAg_B0085"
/db_xref="GeneID:6795869"
CDS 89283..90224
/gene="fixB"
/locus_tag="SeAg_B0085"
/note="involved in electron transfer during carnitine
metabolism"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein FixB"
/protein_id="YP_002145060.1"
/db_xref="GI:197250896"
/db_xref="GeneID:6795869"
/translation="MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATA
CHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYR
LSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS
RSGEMHTVQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALC
QTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQT
IFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR"
misc_feature 89283..90221
/gene="fixB"
/locus_tag="SeAg_B0085"
/note="putative electron transfer flavoprotein FixB;
Provisional; Region: fixB; PRK03363"
/db_xref="CDD:179570"
misc_feature 89337..89768
/gene="fixB"
/locus_tag="SeAg_B0085"
/note="Electron transfer flavoprotein domain; Region: ETF;
smart00893"
/db_xref="CDD:197961"
misc_feature 89847..90107
/gene="fixB"
/locus_tag="SeAg_B0085"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene 90274..91560
/gene="fixC"
/locus_tag="SeAg_B0086"
/db_xref="GeneID:6795801"
CDS 90274..91560
/gene="fixC"
/locus_tag="SeAg_B0086"
/note="FAD/NAD(P)-binding domain; possibly part of an
electron transfer system required for anaerobic carnitine
reduction"
/codon_start=1
/transl_table=11
/product="oxidoreductase FixC"
/protein_id="YP_002145061.1"
/db_xref="GI:197251386"
/db_xref="GeneID:6795801"
/translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN
VTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVS
YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILAD
GVNSLLAEKLGMAKRVEASHVAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGAPTD
GLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY
AAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSA
MKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVSIARDLFT
VDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL"
misc_feature 90274..91557
/gene="fixC"
/locus_tag="SeAg_B0086"
/note="putative oxidoreductase FixC; Provisional; Region:
PRK10157"
/db_xref="CDD:182273"
gene 91557..91844
/locus_tag="SeAg_B0087"
/db_xref="GeneID:6794372"
CDS 91557..91844
/locus_tag="SeAg_B0087"
/codon_start=1
/transl_table=11
/product="ferredoxin-like protein ydiT"
/protein_id="YP_002145062.1"
/db_xref="GI:197250583"
/db_xref="GeneID:6794372"
/translation="MTSPVNVDVKLGVNKFNVDEDSPHIILKTDPDKQALEVLIKACP
AGLYKKQDDGSVRFDYAGCLECGTCRILGLDTALEKWEYPRGTFGVEFRYG"
misc_feature 91557..91841
/locus_tag="SeAg_B0087"
/note="ferredoxin-like protein FixX; Provisional; Region:
PRK15449"
/db_xref="CDD:185346"
gene 91991..93331
/locus_tag="SeAg_B0088"
/db_xref="GeneID:6794500"
CDS 91991..93331
/locus_tag="SeAg_B0088"
/note="identified by match to protein family HMM PF00083;
match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="metabolite transport protein YaaU"
/protein_id="YP_002145063.2"
/db_xref="GI:449785012"
/db_xref="GeneID:6794500"
/translation="MQQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQL
TPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISVATMF
VSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANL
VGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFG
EPVCFDDEPPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWE
QGRNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGI
ILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI
FITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR"
misc_feature 92048..93253
/locus_tag="SeAg_B0088"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 92066..93277
/locus_tag="SeAg_B0088"
/note="Sugar (and other) transporter; Region: Sugar_tr;
pfam00083"
/db_xref="CDD:200987"
misc_feature order(92090..92092,92099..92107,92111..92116,92165..92167,
92174..92179,92186..92188,92198..92203,92207..92212,
92348..92353,92360..92365,92372..92377,92384..92386,
92420..92425,92432..92437,92453..92455,92756..92758,
92765..92770,92777..92782,92789..92791,92831..92833,
92843..92845,92855..92857,92864..92866,92876..92878,
93017..93019,93026..93031,93038..93040,93050..93055,
93062..93064,93101..93106,93113..93118,93125..93130,
93137..93139)
/locus_tag="SeAg_B0088"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 93420..93650
/locus_tag="SeAg_B0089"
/db_xref="GeneID:6795360"
CDS 93420..93650
/locus_tag="SeAg_B0089"
/note="identified by match to protein family HMM PF06004"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145064.1"
/db_xref="GI:197247422"
/db_xref="GeneID:6795360"
/translation="MQKRLMTALFTAAILFTVAGCSSNQAVETTDGKTIVTDGKPEVD
NDTGMVSYKNAATGKTEQINRDQLKNMSELDN"
misc_feature 93489..93641
/locus_tag="SeAg_B0089"
/note="Bacterial protein of unknown function (DUF903);
Region: DUF903; pfam06004"
/db_xref="CDD:203370"
gene 93936..94358
/locus_tag="SeAg_B0090"
/db_xref="GeneID:6796083"
CDS 93936..94358
/locus_tag="SeAg_B0090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145065.1"
/db_xref="GI:197248035"
/db_xref="GeneID:6796083"
/translation="MKLKLIPFYLLALFSAASGATEINACKDLIGTWKTTADNPPYTM
TILPPVEGCGEKCVKLNVQYELDVTHRNALYCHEGQEGVKGQGPMVIAFEGAYGGHAI
GTYNRQLQLLWAGVIPKNKKGKWITKMENYWFRQVKAH"
gene complement(94362..94478)
/locus_tag="SeAg_B0091"
/db_xref="GeneID:6797286"
CDS complement(94362..94478)
/locus_tag="SeAg_B0091"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145066.1"
/db_xref="GI:197248535"
/db_xref="GeneID:6797286"
/translation="MLALFFINSSSGAGKPLECARAGSKPFVNKTVLRAVLW"
gene complement(94582..94872)
/locus_tag="SeAg_B0092"
/db_xref="GeneID:6796984"
CDS complement(94582..94872)
/locus_tag="SeAg_B0092"
/note="identified by match to protein family HMM PF07338"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145067.1"
/db_xref="GI:197249316"
/db_xref="GeneID:6796984"
/translation="MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVS
QSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK"
misc_feature complement(94597..94770)
/locus_tag="SeAg_B0092"
/note="Protein of unknown function (DUF1471); Region:
DUF1471; pfam07338"
/db_xref="CDD:203619"
gene 95769..97658
/locus_tag="SeAg_B0093"
/db_xref="GeneID:6795319"
CDS 95769..97658
/locus_tag="SeAg_B0093"
/note="identified by match to protein family HMM PF00884;
match to protein family HMM TIGR01409"
/codon_start=1
/transl_table=11
/product="sulfatase"
/protein_id="YP_002145068.1"
/db_xref="GI:197247800"
/db_xref="GeneID:6795319"
/translation="MSNKKNLSAEETDLTRRKLLTSAGILAAGGMLSGAVKADEKCAV
KAKPAWDKPFTGEIPEKLPEGYNILLVVTDQERFFPTFPFPVPGRERLMKTGVTFCNH
QNTSNVCTPSRSVLYTGLHMPQTKMFDNLGLPWMPYDLDPALGTTGHMMRELGYYTAY
KGKWHLTEKLEKPLPDEKDEDIDVGDIPEPELHKIMEKYGFADYHGIGDIIGHSKGGY
FYDSTTTAQTINWLRCKGQPLNDQHKPWFLAVNLVNPHDVMFIDTDKEGEKVQWRGEL
DQDDNTLAPTQPPENELYQASWPNYPLPANRHQSFNEQGRPPAHLEYQTARAALEGQF
PDEDRRWRKLLDYYFNCIRDCDTHLDRILNELDALKLTDKTIVVFTADHGELGGSHQM
HGKGASVYKEQIHVPMIISHPAYPGNKKCQALTCHLDIAPTLVGLTGLPEEKQHQALG
NRKGVNFSGLLKNPEGVAVNAVRNASLYCYGMILYTDAHYLHRVIALQRDKQKTVAQI
KQEISHLHPDFSHRSGTRMINDGRYKFARYFSLREHNTPETWEDLIKYNDLELYDLKN
DPDENHNLAADKQKYQDLILTMNEKLNKIIKDEIGVDDGSFMPDAAHEPWDLTIEQFN
RMAKD"
misc_feature 95967..97472
/locus_tag="SeAg_B0093"
/note="Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism]; Region: AslA; COG3119"
/db_xref="CDD:32933"
misc_feature 95967..>96611
/locus_tag="SeAg_B0093"
/note="Sulfatase; Region: Sulfatase; cl10460"
/db_xref="CDD:213119"
misc_feature <96768..97100
/locus_tag="SeAg_B0093"
/note="Sulfatase; Region: Sulfatase; cl10460"
/db_xref="CDD:213119"
misc_feature <97446..97595
/locus_tag="SeAg_B0093"
/note="Sulfatase; Region: Sulfatase; cl10460"
/db_xref="CDD:213119"
gene 98212..98742
/gene="kefF"
/locus_tag="SeAg_B0094"
/db_xref="GeneID:6793292"
CDS 98212..98742
/gene="kefF"
/locus_tag="SeAg_B0094"
/note="'Required for full activity of KefC, a
potassium-proton antiporter'"
/codon_start=1
/transl_table=11
/product="glutathione-regulated potassium-efflux system
ancillary protein KefF"
/protein_id="YP_002145069.1"
/db_xref="GI:197247954"
/db_xref="GeneID:6793292"
/translation="MILIIYAHPYPHHSHANKRMLEQAGTLENVEIRSLYHLYPDFNI
DVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGHGGTALHGKHLLW
AVTTGGGENHFAIGSHPGFDVLSQPLQATALYCGLKWLPPFAMHCTFICDDDTLQAQA
RQYKQRLLAWQEVNHG"
misc_feature 98212..98739
/gene="kefF"
/locus_tag="SeAg_B0094"
/note="glutathione-regulated potassium-efflux system
ancillary protein KefF; Provisional; Region: PRK00871"
/db_xref="CDD:179148"
gene 98735..100597
/locus_tag="SeAg_B0095"
/db_xref="GeneID:6796877"
CDS 98735..100597
/locus_tag="SeAg_B0095"
/note="transport system that facilitates potassium-efflux"
/codon_start=1
/transl_table=11
/product="glutathione-regulated potassium-efflux system
protein KefC"
/protein_id="YP_002145070.1"
/db_xref="GI:197251104"
/db_xref="GeneID:6796877"
/translation="MDSHTLLQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
GLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVVCGGLIG
LFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAI
PLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREV
FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
FIGVGMSIDFGTLVENPLRILLLLAGFLAIKIVMLWLVARPLGVPAKQRRWFAVLLGQ
GSEFAFVVFGAAQMADVLEPEWAKALTLAVALSMAATPIFLVLLTRMEKTATGEAREA
DEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
TRMDLLESAGAAKAEVLINAIDDPQTNLQLSELVKTHFPHLQIIARARDVDHYIRLRQ
AGVAMPERETFEGALKSGRQALEALGLGRYEARERADLFRHFNTRMVEEMAKGENDPL
SRAAAYKRTSAMLSEIITEDREHLSLIQRHGWQGTAEGKHSGEVADEPEVKPSI"
misc_feature 98735..100591
/locus_tag="SeAg_B0095"
/note="glutathione-regulated potassium-efflux system
protein KefC; Provisional; Region: PRK03562"
/db_xref="CDD:179594"
misc_feature 98771..99589
/locus_tag="SeAg_B0095"
/note="transporter, monovalent cation:proton antiporter-2
(CPA2) family; Region: 2a37; TIGR00932"
/db_xref="CDD:162117"
misc_feature 99938..100267
/locus_tag="SeAg_B0095"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:202177"
gene 100796..101275
/gene="folA"
/locus_tag="SeAg_B0096"
/db_xref="GeneID:6793757"
CDS 100796..101275
/gene="folA"
/locus_tag="SeAg_B0096"
/EC_number="1.5.1.3"
/note="catalyzes the reduction of dihydrofolate to
tetrahydrofolate"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase"
/protein_id="YP_002145071.1"
/db_xref="GI:197251822"
/db_xref="GeneID:6793757"
/translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGR
HTWESIGRPLPGRKNIVISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQ
FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
misc_feature 100796..101272
/gene="folA"
/locus_tag="SeAg_B0096"
/note="Dihydrofolate reductase [Coenzyme metabolism];
Region: FolA; COG0262"
/db_xref="CDD:223340"
misc_feature 100799..101266
/gene="folA"
/locus_tag="SeAg_B0096"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cd00209"
/db_xref="CDD:238127"
misc_feature order(100808..100810,100859..100861,100874..100876,
100964..100966,101075..101077,101093..101095,
101132..101134)
/gene="folA"
/locus_tag="SeAg_B0096"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:238127"
misc_feature order(100814..100816,100835..100837,100925..100933,
100985..100987,101078..101089)
/gene="folA"
/locus_tag="SeAg_B0096"
/note="NADP+ binding site [chemical binding]; other site"
/db_xref="CDD:238127"
gene complement(101381..102229)
/gene="apaH"
/locus_tag="SeAg_B0097"
/db_xref="GeneID:6796000"
CDS complement(101381..102229)
/gene="apaH"
/locus_tag="SeAg_B0097"
/EC_number="3.6.1.41"
/note="'hydrolyzes P(1),P(4)-bis(5'-adenosyl)
tetraphosphate to form 2 ADP'"
/codon_start=1
/transl_table=11
/product="diadenosine tetraphosphatase"
/protein_id="YP_002145072.1"
/db_xref="GI:197251522"
/db_xref="GeneID:6796000"
/translation="MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPG
SLDVLRYVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
RRQPLLQVDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
NNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASPENAPAPLKPWFAIPGPVS
EAYSIAFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKQYFVQPSNRQMDMGE
GEAVNA"
misc_feature complement(101393..102229)
/gene="apaH"
/locus_tag="SeAg_B0097"
/note="bis(5'-nucleosyl)-tetraphosphatase (symmetrical);
Region: apaH; TIGR00668"
/db_xref="CDD:233082"
misc_feature complement(101453..102223)
/gene="apaH"
/locus_tag="SeAg_B0097"
/note="Escherichia coli ApaH and related proteins,
metallophosphatase domain; Region: MPP_ApaH; cd07422"
/db_xref="CDD:163665"
misc_feature complement(order(101483..101485,101498..101500,
101549..101551,101870..101872,102032..102037,
102107..102112,102119..102121,102200..102202,
102206..102208))
/gene="apaH"
/locus_tag="SeAg_B0097"
/note="active site"
/db_xref="CDD:163665"
misc_feature complement(order(101549..101551,101870..101872,
102035..102037,102119..102121,102200..102202,
102206..102208))
/gene="apaH"
/locus_tag="SeAg_B0097"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163665"
gene complement(102240..102617)
/gene="apaG"
/locus_tag="SeAg_B0098"
/db_xref="GeneID:6796734"
CDS complement(102240..102617)
/gene="apaG"
/locus_tag="SeAg_B0098"
/note="protein associated with Co2+ and Mg2+ efflux"
/codon_start=1
/transl_table=11
/product="ApaG protein"
/protein_id="YP_002145073.1"
/db_xref="GI:197250718"
/db_xref="GeneID:6796734"
/translation="MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQ
LLGRYWLITNGHGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMI
DENGDAFTIDIPVFRLAVPTLIH"
misc_feature complement(102243..102617)
/gene="apaG"
/locus_tag="SeAg_B0098"
/note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region:
apaG; PRK05461"
/db_xref="CDD:180098"
gene complement(102620..103441)
/gene="ksgA"
/locus_tag="SeAg_B0099"
/db_xref="GeneID:6793848"
CDS complement(102620..103441)
/gene="ksgA"
/locus_tag="SeAg_B0099"
/EC_number="2.1.1.-"
/note="catalyzes the transfer of a total of four methyl
groups from S-adenosyl-l-methionine (S-AdoMet) to two
adjacent adenosine bases A1518 and A1519 in 16S rRNA;
mutations in ksgA causes resistance to the translation
initiation inhibitor kasugamycin"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="YP_002145074.1"
/db_xref="GI:197249198"
/db_xref="GeneID:6793848"
/translation="MNNRVHQGHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEI
GPGLAALTEPVGERLDKLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSA
QLGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
SVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAF
NQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPLKES"
misc_feature complement(102641..103441)
/gene="ksgA"
/locus_tag="SeAg_B0099"
/note="16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed; Region: ksgA; PRK00274"
/db_xref="CDD:234708"
misc_feature complement(102650..103411)
/gene="ksgA"
/locus_tag="SeAg_B0099"
/note="Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis]; Region:
KsgA; COG0030"
/db_xref="CDD:223109"
gene complement(103438..104427)
/gene="pdxA"
/locus_tag="SeAg_B0100"
/db_xref="GeneID:6795956"
CDS complement(103438..104427)
/gene="pdxA"
/locus_tag="SeAg_B0100"
/EC_number="1.1.1.262"
/note="catalyzes oxidation of
4-(phosphohydroxy)-L-threonine into
2-amino-3-oxo-4-(phosphohydroxy)butyric acid which
decarboxylates to form
1-amino-3-(phosphohydroxy)propan-2-one
(3-amino-2-oxopropyl phosphate)"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="YP_002145075.1"
/db_xref="GI:197247407"
/db_xref="GeneID:6795956"
/translation="MSSAQRVVITPGEPAGIGPDLVVQLAQRAWPIELVVCADGALLT
ERAAMLGLPLSLLPYSPDVPAAPQPAGTLTLLPVSLRAPAISGQLTVENGPYVVETLA
RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
ALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ"
misc_feature complement(103441..104427)
/gene="pdxA"
/locus_tag="SeAg_B0100"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed; Region: pdxA; PRK00232"
/db_xref="CDD:178940"
misc_feature complement(103459..104409)
/gene="pdxA"
/locus_tag="SeAg_B0100"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene complement(104427..105713)
/gene="surA"
/locus_tag="SeAg_B0101"
/db_xref="GeneID:6793951"
CDS complement(104427..105713)
/gene="surA"
/locus_tag="SeAg_B0101"
/EC_number="5.2.1.8"
/note="'Chaperone involved in the folding of
extracytoplasmic proteins, especially OmpA, OmpF and
LamB'"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl cis-trans isomerase SurA"
/protein_id="YP_002145076.1"
/db_xref="GI:197248833"
/db_xref="GeneID:6793951"
/translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
LMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIAN
IAKQNNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDAL
AKQIGTQNDASTELNLSHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAIT
YSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQ
SQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGS
ANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAA
QKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN"
misc_feature complement(104430..105659)
/gene="surA"
/locus_tag="SeAg_B0101"
/note="peptidyl-prolyl cis-trans isomerase SurA;
Provisional; Region: PRK10770"
/db_xref="CDD:236758"
misc_feature complement(105288..105641)
/gene="surA"
/locus_tag="SeAg_B0101"
/note="SurA N-terminal domain; Region: SurA_N; pfam09312"
/db_xref="CDD:150092"
misc_feature complement(104898..105182)
/gene="surA"
/locus_tag="SeAg_B0101"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
misc_feature complement(104568..104849)
/gene="surA"
/locus_tag="SeAg_B0101"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:216038"
gene complement(105767..108127)
/gene="imp"
/locus_tag="SeAg_B0102"
/db_xref="GeneID:6796635"
CDS complement(105767..108127)
/gene="imp"
/locus_tag="SeAg_B0102"
/note="determines N-hexane tolerance and is involved in
outer membrane permeability"
/codon_start=1
/transl_table=11
/product="organic solvent tolerance protein"
/protein_id="YP_002145077.1"
/db_xref="GI:197250730"
/db_xref="GeneID:6796635"
/translation="MKKRIPTLLATMIASALYSHQGLAADLASQCMLGVPSYDRPLVK
GDTNDLPVTINADNAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKQAEGQPEPVR
TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
RYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
PVGDKRRSGFLIPNAKYTTKNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
RYLTQAGEGVMELDYLPSDKVYEDDHPKEGDKHRWLFYWQHSGVMDQVWRFNVDYTKV
SDSSYFNDFDSKYGSSTDGYATQKFSVGYAVQNFDATVSTKQFQVFNDQNTSSYSAEP
QLDVNYYHNDLGPFDTRIYGQAVHFVNTKDNMPEATRVHLEPTINLPLSNRWGSLNTE
AKLMATHYQQTNLDSYNSDPNNKNKLKDSVNRVMPQFKVDGKLIFERDMAMLAPGYTQ
TLEPRVQYLYVPYRDQSGIYNYDSSLLQSDYNGLFRDRTYGGLDRIASANQVTTGVTT
RIYDDAAVERFNVSVGQIYYFTESRTGDDNIKWENDDKTGSLVWAGDTYWRISERWGL
RSGVQYDTRLDSVATSSSSLEYRRDQDRLVQLNYRYASPEYIQATLPSYYSTAEQYKN
GINQVGAVASWPIADRWSIVGAYYFDTNSSKPADQMLGLQYNSCCYAIRVGYERKLNG
WDNDKQHAIYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQSSM"
misc_feature complement(105770..108127)
/gene="imp"
/locus_tag="SeAg_B0102"
/note="LPS assembly outer membrane complex protein LptD;
Provisional; Region: PRK03761"
/db_xref="CDD:179645"
misc_feature complement(107543..107971)
/gene="imp"
/locus_tag="SeAg_B0102"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:190815"
misc_feature complement(106031..107206)
/gene="imp"
/locus_tag="SeAg_B0102"
/note="Organic solvent tolerance protein; Region: OstA_C;
pfam04453"
/db_xref="CDD:190995"
gene complement(108137..108298)
/locus_tag="SeAg_B0103"
/db_xref="GeneID:6793860"
CDS complement(108137..108298)
/locus_tag="SeAg_B0103"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145078.1"
/db_xref="GI:197250494"
/db_xref="GeneID:6793860"
/translation="MWDIAYNLHYHTCHSMPCLTPQTLNGRINTGAAKMSKLGCDRLS
RATLPMMEQ"
gene 108381..109193
/gene="djlA"
/locus_tag="SeAg_B0104"
/db_xref="GeneID:6796705"
CDS 108381..109193
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="functions as a co-chaperone with DnaK; involved in
regulation of colanic acid capsule; inner membrane
protein; dimerized via transmembrane domain; J-like domain
is cytoplasmic and can functionally substitute for DnaJ;
stimulates synthesis of colanic acid mucoid capsule
through the RcsB/C signal transduction system"
/codon_start=1
/transl_table=11
/product="Dna-J like membrane chaperone protein"
/protein_id="YP_002145079.1"
/db_xref="GI:197249861"
/db_xref="GeneID:6796705"
/translation="MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARSRKMAWF
ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQNAFR
VGKADNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEE
LGISRVQFDQFLRMMQGGAQFGGGYHQQSGGGWQQAQRGPTLEDACNVLGVKTTDDAT
TIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK"
misc_feature 108381..109190
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="Dna-J like membrane chaperone protein; Provisional;
Region: djlA; PRK09430"
/db_xref="CDD:236512"
misc_feature 108549..108866
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="N-terminal tellurium resistance protein terB-like
domain of heat shock DnaJ-like proteins; Region:
terB_like_DjlA; cd07316"
/db_xref="CDD:143585"
misc_feature order(108585..108587,108606..108608,108807..108809,
108828..108830)
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:143585"
misc_feature 109002..109163
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(109074..109082,109128..109130,109137..109142,
109149..109154)
/gene="djlA"
/locus_tag="SeAg_B0104"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene complement(109288..109947)
/locus_tag="SeAg_B0105"
/db_xref="GeneID:6793055"
CDS complement(109288..109947)
/locus_tag="SeAg_B0105"
/note="catalyzes the synthesis of pseudouridine from
uracil-746 in 23S ribosomal RNA and from uracil-32 in the
anticodon stem and loop of transfer RNAs"
/codon_start=1
/transl_table=11
/product="23S rRNA/tRNA pseudouridine synthase A"
/protein_id="YP_002145080.1"
/db_xref="GI:197250796"
/db_xref="GeneID:6793055"
/translation="MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKD
SIMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGR
SHQLRVHMLALGHPILGDRFYASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPAD
F"
misc_feature complement(109291..>109923)
/locus_tag="SeAg_B0105"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature complement(109342..109881)
/locus_tag="SeAg_B0105"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature complement(order(109453..109455,109756..109767))
/locus_tag="SeAg_B0105"
/note="active site"
/db_xref="CDD:211346"
gene complement(109959..112865)
/gene="rapA"
/locus_tag="SeAg_B0106"
/db_xref="GeneID:6792939"
CDS complement(109959..112865)
/gene="rapA"
/locus_tag="SeAg_B0106"
/EC_number="3.6.1.-"
/note="'transcription regulator that activates
transcription by stimulating RNA polymerase (RNAP)
recycling in case of stress conditions such as supercoiled
DNA or high salt concentrations. Probably acts by
releasing the RNAP, when it is trapped or immobilized on
tightly supercoiled DNA'"
/codon_start=1
/transl_table=11
/product="ATP-dependent helicase HepA"
/protein_id="YP_002145081.1"
/db_xref="GI:197248148"
/db_xref="GeneID:6792939"
/translation="MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYA
RSDSPVTRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLL
DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLN
IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
MLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDL
LVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPN
RFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSD
RDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLV
ICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
SEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
YHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEETDGFDDLIKSCREQHEALKAQLE
QGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVL
TPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGS
STISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
EFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSARALIDNARREADEKL
SGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLDALRLIVVTHQ"
misc_feature complement(109968..112862)
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="ATP-dependent helicase HepA; Validated; Region:
PRK04914"
/db_xref="CDD:235319"
misc_feature complement(111918..112349)
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature complement(112314..112328)
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature complement(112017..112028)
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature complement(111060..111428)
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature complement(order(111171..111179,111258..111263,
111324..111335))
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(111069..111071,111078..111080,
111090..111092,111153..111155))
/gene="rapA"
/locus_tag="SeAg_B0106"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
gene complement(113085..115391)
/locus_tag="SeAg_B0107"
/note="DNA polymerase II (Pol II); this gene contains a
frame shift which may be the result of sequencing error;
identified by match to protein family HMM PF00136; match
to protein family HMM PF03104"
/pseudogene="unknown"
/db_xref="GeneID:6793088"
gene complement(115435..115665)
/locus_tag="SeAg_B0108"
/db_xref="GeneID:6796821"
CDS complement(115435..115665)
/locus_tag="SeAg_B0108"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145082.1"
/db_xref="GI:197247795"
/db_xref="GeneID:6796821"
/translation="MELRWRTALLVSDPLHMLRLKTIAQDNGIDSRSSPTRSTRYKSW
WAQTRFLLRETFYYSGYRLLRYMPVQNNSITP"
misc_feature complement(115492..>115662)
/locus_tag="SeAg_B0108"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cl00630"
/db_xref="CDD:207141"
misc_feature complement(order(115504..115506,115609..115611,
115618..115620,115630..115632))
/locus_tag="SeAg_B0108"
/note="putative active site [active]"
/db_xref="CDD:99750"
gene 116194..117399
/locus_tag="SeAg_B0109"
/note="homologous to EryA gene product in L07626; this
gene contains a frame shift which may be the result of
sequencing error; identified by match to protein family
HMM PF01385; match to protein family HMM PF07282; match to
protein family HMM TIGR01766"
/pseudogene="unknown"
/db_xref="GeneID:6793287"
gene complement(117469..117873)
/locus_tag="SeAg_B0110"
/db_xref="GeneID:6793383"
CDS complement(117469..117873)
/locus_tag="SeAg_B0110"
/note="identified by match to protein family HMM PF02698"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145083.2"
/db_xref="GI:449785013"
/db_xref="GeneID:6793383"
/translation="MKYRYIIRIAAGIILIMATVFIHNAIAIYQFSQQNQTRIADCAI
VAGAGVSGKTPSPVFQARLDHAIWLYQQHIVRALVLTGGYGAGATVSDAAIARQYVLE
KGIPVKAIFIEERSTVTRENIRYAKQILRQQH"
misc_feature complement(<117472..117753)
/locus_tag="SeAg_B0110"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cd06259"
/db_xref="CDD:99750"
gene 118391..118810
/locus_tag="SeAg_B0111"
/db_xref="GeneID:6795014"
CDS 118391..118810
/locus_tag="SeAg_B0111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145084.1"
/db_xref="GI:197250479"
/db_xref="GeneID:6795014"
/translation="MNVSMQARLVGSDRYLFVNTQRANPSIKTVSRFFEYKTWTEQIW
RTEIIENGNAFFHWQGHDRKNGHRDTIINYLLNGQRWQSTIEDYIFFHALEGKAWQGH
YDNIIEYVSSDHYVYQSAFAEYITDQTHQRAPHGTRF"
gene complement(118816..119511)
/gene="araD"
/locus_tag="SeAg_B0112"
/db_xref="GeneID:6796690"
CDS complement(118816..119511)
/gene="araD"
/locus_tag="SeAg_B0112"
/EC_number="5.1.3.4"
/note="catalyzes the isomerization of L-ribulose
5-phosphate to D-xylulose 5-phosphate in the anaerobic
catabolism of L-ascorbate; links the arabinose metabolic
pathway to the pentose phosphate pathway and allows the
bacteria to use arabinose as an energy source"
/codon_start=1
/transl_table=11
/product="L-ribulose-5-phosphate 4-epimerase"
/protein_id="YP_002145085.1"
/db_xref="GI:197249821"
/db_xref="GeneID:6796690"
/translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVLVIKPS
GVDYSVMIADDMVVVSLETGEVVEGHKKPSSDTPTHRLLYQAFPTIGGIVHTHSRHAT
IWAQAGQPIPATGTTHADYFYGTIPCTRKMTEAEINGEYEWETGNVIVETFEKQGIDA
AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQSLLDKH
YLRKHGAKAYYGQ"
misc_feature complement(118819..119511)
/gene="araD"
/locus_tag="SeAg_B0112"
/note="L-ribulose-5-phosphate 4-epimerase; Reviewed;
Region: araD; PRK08193"
/db_xref="CDD:181280"
misc_feature complement(118843..119505)
/gene="araD"
/locus_tag="SeAg_B0112"
/note="Class II Aldolase and Adducin head (N-terminal)
domain. Aldolases are ubiquitous enzymes catalyzing
central steps of carbohydrate metabolism. Based on
enzymatic mechanisms, this superfamily has been divided
into two distinct classes (Class I and II); Region:
Aldolase_II; cd00398"
/db_xref="CDD:29521"
misc_feature complement(order(118855..118857,118915..118917,
118936..118938,118948..118950,118969..118971,
119002..119004,119119..119121,119161..119166,
119170..119172,119191..119199,119212..119217,
119221..119223,119362..119367,119371..119373,
119443..119445,119467..119469,119479..119481))
/gene="araD"
/locus_tag="SeAg_B0112"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature complement(order(118999..119001,119221..119223,
119227..119229,119284..119292,119377..119382,
119428..119430))
/gene="araD"
/locus_tag="SeAg_B0112"
/note="active site"
/db_xref="CDD:29521"
misc_feature complement(order(118999..119001,119221..119223,
119227..119229))
/gene="araD"
/locus_tag="SeAg_B0112"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene complement(119652..121154)
/gene="araA"
/locus_tag="SeAg_B0113"
/db_xref="GeneID:6793013"
CDS complement(119652..121154)
/gene="araA"
/locus_tag="SeAg_B0113"
/EC_number="5.3.1.4"
/note="catalyzes the formation of L-ribulose from
L-arabinose in L-arabinose catabolism"
/codon_start=1
/transl_table=11
/product="L-arabinose isomerase"
/protein_id="YP_002145086.1"
/db_xref="GI:197251437"
/db_xref="GeneID:6793013"
/translation="MTIFDNYEVWFVIGSQHLYGAETLRQVTQHAEHVVNALNTKAKL
PCKLVLKPLGTSPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLSILNKPLLQ
FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKEAHTRI
GAWMRQAVSKQDTRQLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
NSIGDGDINALIDEYESSYTLTPATQIHGDKRQNVREAARIELGMKRFLEQGGFHAFT
TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKEDPARLIFNTQTGPAI
VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
TVFSHALDLNDMRQFAEIHDIEIAVIDNDTRLPAFKDALRWNEVYYGLKR"
misc_feature complement(119655..121154)
/gene="araA"
/locus_tag="SeAg_B0113"
/note="L-arabinose isomerase; Provisional; Region:
PRK02929"
/db_xref="CDD:179503"
misc_feature complement(119682..121136)
/gene="araA"
/locus_tag="SeAg_B0113"
/note="L-Arabinose isomerase (AI) catalyzes the
isomerization of L-arabinose to L-ribulose, the first
reaction in its conversion into D-xylulose-5-phosphate, an
intermediate in the pentose phosphate pathway, which
allows L-arabinose to be used as a carbon...; Region:
L-arabinose_isomerase; cd03557"
/db_xref="CDD:63888"
misc_feature complement(order(120312..120317,120342..120344,
120507..120509,120519..120539,120558..120560,
120567..120569,120603..120605,120624..120626,
120732..120737,120891..120893,120951..120953,
120960..120962,120972..120974))
/gene="araA"
/locus_tag="SeAg_B0113"
/note="putative hexamer (dimer of trimers) interface
[polypeptide binding]; other site"
/db_xref="CDD:63888"
misc_feature complement(order(119682..119687,119754..119756,
119808..119810,119817..119819,119826..119828,
119835..119840,119883..119885,119889..119894,
119898..119900,119955..119963,120138..120155,
120585..120596,120678..120680,120711..120713,
120717..120719,120732..120734,120738..120743,
120750..120752,120759..120764,120771..120776,
120792..120794,120801..120809,120816..120818,
120822..120824,120828..120830,120837..120839,
120843..120845,120891..120902,120906..120908))
/gene="araA"
/locus_tag="SeAg_B0113"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:63888"
misc_feature complement(order(119805..119810,120156..120158,
120237..120239,120318..120320,120906..120908))
/gene="araA"
/locus_tag="SeAg_B0113"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:63888"
misc_feature complement(order(119805..119807,120156..120158,
120237..120239))
/gene="araA"
/locus_tag="SeAg_B0113"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:63888"
gene complement(121165..122874)
/gene="araB"
/locus_tag="SeAg_B0114"
/db_xref="GeneID:6794424"
CDS complement(121165..122874)
/gene="araB"
/locus_tag="SeAg_B0114"
/EC_number="2.7.1.16"
/note="catalyzes the phosphorylation of ribulose to
ribulose 5-phosphate"
/codon_start=1
/transl_table=11
/product="ribulokinase"
/protein_id="YP_002145087.1"
/db_xref="GI:197248443"
/db_xref="GeneID:6794424"
/translation="MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYPRWQEGRYCD
GPNNQFRHHPRDYMESMEAALKAVLAQLSSAQRANVVGIGVDSTGSTPAPIDADGNVL
ALRPEFAENPNAMFVLWKDHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKI
LHVTRQDSAVAQAAVSWIELCDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLP
PSSFFDELDPCINRHLRYPLFSETFTADLPVGTLCAEWAQRLGLPESVVISGGAFDCH
MGAVGAGAQPNTLVKVIGTSTCDILIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAG
QSAFGDIYAWFSRVLSWPLEQLAAQHPELKTQINASQKQLLPALTDAWAKNPSLDHLP
VVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLVASTAFGARAIQECFTDQGI
AVNNVMALGGIARKNQVIMQVCCDVLNRPLQIVASDQCCALGAAIFAAVAAKIHADIP
AAQQSMASAVERTLRPRPEQAQRLEQLYRRYQQWALSAEQHYLPTAAPAPTTPANQAI
LTH"
misc_feature complement(121297..122874)
/gene="araB"
/locus_tag="SeAg_B0114"
/note="ribulokinase; Provisional; Region: PRK04123"
/db_xref="CDD:179742"
misc_feature complement(121408..122871)
/gene="araB"
/locus_tag="SeAg_B0114"
/note="Ribulokinases; belongs to the FGGY family of
carbohydrate kinases; Region: FGGY_RBK; cd07781"
/db_xref="CDD:198358"
misc_feature complement(order(121408..121410,121414..121416,
121657..121659,121669..121671,121879..121887,
121897..121899,121903..121929,121936..121938,
121942..121944,122032..122040,122044..122046,
122068..122070,122074..122076,122131..122145,
122239..122247,122257..122262,122269..122274,
122410..122412,122425..122427,122431..122442,
122617..122634,122788..122790,122800..122805,
122818..122820,122824..122826,122830..122832,
122851..122853,122857..122859,122863..122865))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="N- and C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198358"
misc_feature complement(order(121408..121410,121480..121482,
121492..121500,121741..121743,121846..121848,
121858..121860,121981..121983,121990..121998,
122050..122055,122518..122520,122605..122607,
122611..122613,122830..122832,122836..122847,
122851..122853))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="active site"
/db_xref="CDD:198358"
misc_feature complement(order(121480..121482,121492..121500,
121732..121734,121738..121743,121846..121851,
121855..121860,121990..121998,122053..122055,
122830..122832,122836..122847,122851..122853))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="MgATP binding site [chemical binding]; other site"
/db_xref="CDD:198358"
misc_feature complement(order(122053..122055,122842..122844,
122851..122853))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="catalytic site [active]"
/db_xref="CDD:198358"
misc_feature complement(order(122053..122055,122851..122853))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198358"
misc_feature complement(order(121879..121881,121981..121983,
121990..121992,122050..122055,122254..122256,
122413..122415,122518..122520,122605..122613,
122842..122847))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="carbohydrate binding site [chemical binding]; other
site"
/db_xref="CDD:198358"
misc_feature complement(order(121606..121614,121618..121644,
121678..121683,121696..121698,121702..121704,
121819..121836,121843..121845,121855..121857))
/gene="araB"
/locus_tag="SeAg_B0114"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:198358"
gene 123215..124060
/locus_tag="SeAg_B0115"
/db_xref="GeneID:6794513"
CDS 123215..124060
/locus_tag="SeAg_B0115"
/note="positive and negative regulator; regulates the
araBAD and araFGH operons and other genes involved in the
transport and catabolism of L-arabinose"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator AraC"
/protein_id="YP_002145088.1"
/db_xref="GI:197247811"
/db_xref="GeneID:6794513"
/translation="MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
YILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRA
YWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL
LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQ
LGISVLSWREDQRISQAKLLLSTTRMPIASVGRNVGFDDQLYFSRVFKKCTGASPSEF
RAGCE"
misc_feature 123215..124057
/locus_tag="SeAg_B0115"
/note="DNA-binding transcriptional regulator AraC;
Provisional; Region: PRK10572"
/db_xref="CDD:182558"
misc_feature 123275..123661
/locus_tag="SeAg_B0115"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature 123770..123895
/locus_tag="SeAg_B0115"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 123935..124045
/locus_tag="SeAg_B0115"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 124179..124946
/locus_tag="SeAg_B0116"
/db_xref="GeneID:6794754"
CDS 124179..124946
/locus_tag="SeAg_B0116"
/note="identified by match to protein family HMM PF09335"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145089.1"
/db_xref="GI:197249423"
/db_xref="GeneID:6794754"
/translation="MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAG
LGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWRFKKPLHRWSFMKKNKSLLDKTE
HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI
LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRL
LYLAPLTLGIGVVALVVLVRHPLMPVYIDILRKVVGY"
misc_feature 124200..124793
/locus_tag="SeAg_B0116"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
misc_feature 124284..124661
/locus_tag="SeAg_B0116"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:204201"
gene complement(124985..125692)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/db_xref="GeneID:6793333"
CDS complement(124985..125692)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="with TbpA and ThiP is part of the thiamine and TPP
transport system"
/codon_start=1
/transl_table=11
/product="thiamine transporter ATP-binding subunit"
/protein_id="YP_002145090.1"
/db_xref="GI:197248796"
/db_xref="GeneID:6793333"
/translation="MLKLIDITWLYHHLPMRFTLAVERGEQVAILGPSGAGKSTLLNL
IAGFLAPASGTLLIAGEDHTLTPPSRRPVSMLFQENNLFSHLNVQQNIGLGLNPGLTL
NASQREKRDAIAHQMGIESLMTRLPGELSGGQRQRVALARCLVREQPVLLLDEPFSAL
DPALRQEMLTLVSDICRERQLTLLMVSHSVEDAARIAPRSIVVADGRIAWQGKTDELL
SGQASASALLGIKSHIL"
misc_feature complement(125045..125692)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="thiamine transporter ATP-binding subunit;
Provisional; Region: thiQ; PRK10771"
/db_xref="CDD:182716"
misc_feature complement(125057..125689)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="ATP-binding cassette domain of the thiamine
transport system; Region: ABC_ThiQ_thiamine_transporter;
cd03298"
/db_xref="CDD:213265"
misc_feature complement(125576..125599)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213265"
misc_feature complement(order(125129..125131,125228..125233,
125459..125461,125573..125581,125585..125590))
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213265"
misc_feature complement(125459..125470)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="Q-loop/lid; other site"
/db_xref="CDD:213265"
misc_feature complement(125276..125305)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213265"
misc_feature complement(125228..125245)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="Walker B; other site"
/db_xref="CDD:213265"
misc_feature complement(125210..125221)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="D-loop; other site"
/db_xref="CDD:213265"
misc_feature complement(125123..125143)
/gene="thiQ"
/locus_tag="SeAg_B0117"
/note="H-loop/switch region; other site"
/db_xref="CDD:213265"
gene complement(125676..127286)
/gene="thiP"
/locus_tag="SeAg_B0118"
/db_xref="GeneID:6796597"
CDS complement(125676..127286)
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="permease; with TbpA and ThiQ functions in transport
of thiamine and thiamine pyrophosphate into the cell;
repressed in presence of exogenous thiamine"
/codon_start=1
/transl_table=11
/product="thiamine transporter membrane protein"
/protein_id="YP_002145091.1"
/db_xref="GI:197248623"
/db_xref="GeneID:6796597"
/translation="MATRRQPLIPGWLIPGLCAAALMITVSLAAFLALWLNAPSGAWS
TIWRDSYLWHVVRFSFWQAFLSAVLSVVPAVFLARALYRRRFPGRLALLRLCAMTLIL
PVLVAVFGILSVYGRQGWLASLWQMLGLQWTFSPYGLQGILLAHVFFNLPMASRLLLQ
SLESIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
GGPQATTIELAIFQALSYDYDPARAAMLALIQMVCCLALVLLSQRLSKAIAPGMTLTQ
GWRDPDDRLHSRLTDALLIVLALLLLLPPLVAVVVDGVNRSLPEVLAQPILWQAVWTS
LRIALAAGVLCVVLTMMLLWSSRELRQRQQVFAGQTLELSGMLILAMPGIVLATGFFL
LLNNSVGLPESADGIVIFTNALMAIPYALKVLENPMRDITARYGMLCQSLGIEGWLRL
KIVELRALKRPLAQALAFACVLSIGDFGVVALFGNDNFRTLPFYLYQQIGSYRSQDGA
VTALILLLLCFTLFTLIEKLPGRHAKTD"
misc_feature complement(125682..127256)
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="thiamine transporter membrane protein; Reviewed;
Region: thiP; PRK09433"
/db_xref="CDD:181853"
misc_feature complement(126522..127118)
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(126522..126527,126534..126539,
126546..126551,126555..126560,126567..126572,
126600..126605,126639..126644,126651..126662,
126681..126683,126690..126695,126735..126737,
126786..126788,126795..126800,126810..126812,
126816..126821,126828..126830,126834..126836,
126843..126848,126951..126953,126957..126962,
126969..126998,127002..127013,127041..127043,
127056..127061,127068..127073))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(126645..126662,126951..126995))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(126570..126572,126600..126602,
126609..126611,126642..126644,126861..126863,
126951..126953))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(126714..126716,126726..126731,
126747..126785))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
misc_feature complement(125754..126293)
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(125754..125759,125766..125771,
125799..125804,125841..125846,125853..125864,
125883..125885,125892..125897,125937..125939,
125988..125990,125997..126002,126012..126014,
126018..126023,126030..126032,126036..126038,
126042..126047,126114..126116,126120..126125,
126132..126161,126165..126176,126216..126218,
126231..126236,126243..126248))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(125847..125864,126114..126158))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(125769..125771,125799..125801,
125808..125810,125844..125846,126060..126062,
126114..126116))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(125916..125918,125928..125933,
125949..125987))
/gene="thiP"
/locus_tag="SeAg_B0118"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(127262..128245)
/gene="tbpA"
/locus_tag="SeAg_B0119"
/db_xref="GeneID:6795837"
CDS complement(127262..128245)
/gene="tbpA"
/locus_tag="SeAg_B0119"
/note="part of the thiamine and TPP transport system
tbpA-thiPQ"
/codon_start=1
/transl_table=11
/product="thiamine transporter substrate binding subunit"
/protein_id="YP_002145092.1"
/db_xref="GI:197250327"
/db_xref="GeneID:6795837"
/translation="MLKKYLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAF
EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVA
NEAVKVPGGWENDTFVPFDYGYFAFVYDKSKLKNPPKSLKELVESDQKWRVIYQDPRT
STPGLGLLLWMRKVYGDNAPQAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
PAYHIIEEKKDNYAAANFSEGHYLQVEVAARTVASKQPELAEKFLKFMVSPAFQNAIP
TGNWMYPVADVALPAGFESLAKPATTLEFTPQQVAAQRQAWISEWQRAVSR"
misc_feature complement(127265..128185)
/gene="tbpA"
/locus_tag="SeAg_B0119"
/note="thiamine transporter substrate binding subunit;
Provisional; Region: tbpA; PRK11205"
/db_xref="CDD:183039"
misc_feature complement(127265..128182)
/gene="tbpA"
/locus_tag="SeAg_B0119"
/note="ABC-type thiamine transport system, periplasmic
component [Coenzyme metabolism]; Region: TbpA; COG4143"
/db_xref="CDD:33896"
misc_binding complement(128277..128376)
/note="TPP riboswitch (THI element)"
/bound_moiety="thiamin/thiamin pyrophosphate"
gene complement(128290..128409)
/locus_tag="SeAg_B0121"
/db_xref="GeneID:6795457"
CDS complement(128290..128409)
/locus_tag="SeAg_B0121"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_002145093.1"
/db_xref="GI:197249885"
/db_xref="GeneID:6795457"
/translation="MLPGNKITTLTPNSTGCRAHARAEKIPVEPDPDNAGEGI"
gene complement(128423..130081)
/gene="sgrR"
/locus_tag="SeAg_B0122"
/db_xref="GeneID:6792547"
CDS complement(128423..130081)
/gene="sgrR"
/locus_tag="SeAg_B0122"
/note="activates sgrS under glucose-phosphate stress
conditions"
/codon_start=1
/transl_table=11
/product="transcriptional regulator SgrR"
/protein_id="YP_002145094.1"
/db_xref="GI:197251499"
/db_xref="GeneID:6792547"
/translation="MPSGRLQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLL
NTMQARGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKSA
VRQMLISHLGRSFRQGRHILRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEE
NGELEADIAHHWQQISPLLWRFYLRPGIHFHHGRELEMEDVIASLTRINTLPLYSHIT
KIDSPTAWTLDIHLSQPDRWLPWLLGQVPAMILPREWETLANFASHPIGTGPYAVRRN
TPNQLKILAFDDYFGYRALIDEVNVWVLPDISEEPACGLMLEGPIQGGEKAIESRLEE
GCYYLLFDARTPRGAHPQVREWVSHVLSPTNLLYHADEPLQQLWFPAYGLLPRWHHAR
PGPGEKPAGLETLTLTFYREHIEHRVIARIMSALLAEHQVHLHIQEIDYDQWHAGDIE
SDIWLNSANFTLPLDFSLFAHLCEVPLLQNCIPRDWQGDAAQWRAGEMNLANWCQQLL
TNKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
misc_feature complement(128426..130081)
/gene="sgrR"
/locus_tag="SeAg_B0122"
/note="transcriptional regulator SgrR; Provisional;
Region: PRK13626"
/db_xref="CDD:184188"
misc_feature complement(129728..130069)
/gene="sgrR"
/locus_tag="SeAg_B0122"
/note="Sugar transport-related sRNA regulator N-term;
Region: SgrR_N; pfam12793"
/db_xref="CDD:193269"
misc_feature complement(128438..129736)
/gene="sgrR"
/locus_tag="SeAg_B0122"
/note="The C-terminal solute-binding domain of DNA-binding
transcriptional regulator SgrR is related to the ABC-type
oligopeptide-binding proteins and contains the type 2
periplasmic-binding fold; Region: PBP2_SgrR_like; cd08507"
/db_xref="CDD:173872"
gene 130149..130386
/locus_tag="SeAg_B0123"
/db_xref="GeneID:6792512"
ncRNA 130149..130386
/locus_tag="SeAg_B0123"
/ncRNA_class="other"
/product="SgrS RNA"
/db_xref="GeneID:6792512"
gene 130498..130611
/locus_tag="SeAg_B0125"
/db_xref="GeneID:6794309"
CDS 130498..130611
/locus_tag="SeAg_B0125"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145095.1"
/db_xref="GI:197251096"
/db_xref="GeneID:6794309"
/translation="MPEYPRHERLMSNPALDGATLIRPTGYSGNLVILHNL"
gene complement(130632..131237)
/gene="leuD"
/locus_tag="SeAg_B0126"
/db_xref="GeneID:6793749"
CDS complement(130632..131237)
/gene="leuD"
/locus_tag="SeAg_B0126"
/EC_number="4.2.1.33"
/note="catalyzes the isomerization between
2-isopropylmalate and 3-isopropylmalate in leucine
biosynthesis; forms a heterodimer of LeuC/D"
/codon_start=1
/transl_table=11
/product="isopropylmalate isomerase small subunit"
/protein_id="YP_002145096.1"
/db_xref="GI:197248436"
/db_xref="GeneID:6793749"
/translation="MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
NDWRFLDEKGQQPNPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
APSFADIFYGNSFNNQLLPVTLSDAQVDELFALVKANPGIKFEVDLEAQVVKAGDKTY
SFKIDDFRRHCMLNGLDSIGLTLQHEDAIAAYENKQPAFMR"
misc_feature complement(130794..131195)
/gene="leuD"
/locus_tag="SeAg_B0126"
/note="Aconatase-like swivel domain of 3-isopropylmalate
dehydratase and related uncharacterized proteins.
3-isopropylmalate dehydratase catalyzes the isomerization
between 2-isopropylmalate and 3-isopropylmalate, via the
formation of 2-isopropylmaleate...; Region: IPMI_Swivel;
cd01577"
/db_xref="CDD:73275"
misc_feature complement(130980..130988)
/gene="leuD"
/locus_tag="SeAg_B0126"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73275"
gene complement(131248..132648)
/gene="leuC"
/locus_tag="SeAg_B0127"
/db_xref="GeneID:6796482"
CDS complement(131248..132648)
/gene="leuC"
/locus_tag="SeAg_B0127"
/EC_number="4.2.1.33"
/note="'dehydratase component, catalyzes the isomerization
between 2-isopropylmalate and 3-isopropylmalate'"
/codon_start=1
/transl_table=11
/product="isopropylmalate isomerase large subunit"
/protein_id="YP_002145097.1"
/db_xref="GI:197247828"
/db_xref="GeneID:6796482"
/translation="MAKTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGL
RAHHRPVRQPGKTFATMDHNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNH
PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
GRAKTMKIEVTGNAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMT
LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTV
VTLRAEEIAPQVTWGTNPGQVISVTDIIPDPASFSDPVERASAEKALAYMGLQPGVPL
TDVAIDKVFIGSCTNSRIEDLRAAAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD
KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
AAAAVTGHFADIRSIK"
misc_feature complement(131254..132648)
/gene="leuC"
/locus_tag="SeAg_B0127"
/note="3-isopropylmalate dehydratase large subunit;
Reviewed; Region: PRK00402"
/db_xref="CDD:234748"
misc_feature complement(131272..132564)
/gene="leuC"
/locus_tag="SeAg_B0127"
/note="3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate; Region: IPMI; cd01583"
/db_xref="CDD:153133"
misc_feature complement(order(131344..131346,131359..131361,
131416..131418,132262..132267,132541..132543,
132550..132552))
/gene="leuC"
/locus_tag="SeAg_B0127"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153133"
misc_feature complement(order(131362..131364,131416..131421,
131428..131430,131608..131610,132259..132261))
/gene="leuC"
/locus_tag="SeAg_B0127"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153133"
gene complement(132651..133742)
/gene="leuB"
/locus_tag="SeAg_B0128"
/db_xref="GeneID:6794771"
CDS complement(132651..133742)
/gene="leuB"
/locus_tag="SeAg_B0128"
/EC_number="1.1.1.85"
/note="catalyzes the oxidation of 3-isopropylmalate to
3-carboxy-4-methyl-2-oxopentanoate in leucine
biosynthesis"
/codon_start=1
/transl_table=11
/product="3-isopropylmalate dehydrogenase"
/protein_id="YP_002145098.1"
/db_xref="GI:197249188"
/db_xref="GeneID:6794771"
/translation="MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSRYD
VGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHF
KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPD
VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
FGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEGV
RTGDLARGAAAVSTDEMGDIIARYVAEGV"
misc_feature complement(132657..133736)
/gene="leuB"
/locus_tag="SeAg_B0128"
/note="3-isopropylmalate dehydrogenase; Provisional;
Region: PRK00772"
/db_xref="CDD:179119"
misc_feature complement(132672..133736)
/gene="leuB"
/locus_tag="SeAg_B0128"
/note="tartrate dehydrogenase; Provisional; Region:
PRK08194"
/db_xref="CDD:181281"
gene complement(133742..135313)
/gene="leuA"
/locus_tag="SeAg_B0129"
/db_xref="GeneID:6795946"
CDS complement(133742..135313)
/gene="leuA"
/locus_tag="SeAg_B0129"
/EC_number="2.3.3.13"
/note="catalyzes the formation of 2-isopropylmalate from
acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis"
/codon_start=1
/transl_table=11
/product="2-isopropylmalate synthase"
/protein_id="YP_002145099.1"
/db_xref="GI:197248574"
/db_xref="GeneID:6795946"
/translation="MSQQVIIFDTTLRDGEQALQASLSAKEKLQIALALERMGVDVME
VGFPVSSPGDFESVQTIARTIKNSRVCALARCVEKDIDVAAQALKVADAFRIHTFIAT
SPMHIATKLRSTLDEVIERAVYMVKRARNYTDDVEFSCEDAGRTPVDDLARVVEAAIN
AGARTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGIAVGNSLAAV
HAGARQVEGAMNGIGERAGNCALEEVIMAIKVRKDIMNVHTNINHHEIWRTSQTVSQI
CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
AAVKHRMEEMGYKDTDYNMDHLYDAFLKLADKKGQVFDYDLEALAFINKQQEEPEHFR
LDYFSVQSGSSDIATASVKLACGEEIKAEAANGNGPVDAIYQAINRLTGYDVELVKYD
LNAKGQGKDALGQVDIVVNHHGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
LQRKAQNKENNKETV"
misc_feature complement(133778..135313)
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="2-isopropylmalate synthase; Validated; Region:
PRK00915"
/db_xref="CDD:179166"
misc_feature complement(134489..135295)
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="2-isopropylmalate synthase (IPMS), N-terminal
catalytic TIM barrel domain; Region: DRE_TIM_IPMS;
cd07940"
/db_xref="CDD:163678"
misc_feature complement(order(134702..134704,134708..134710,
134801..134803,134807..134809,134891..134893,
134897..134899,135023..135025,135089..135091,
135182..135184,135263..135265,135272..135277))
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="active site"
/db_xref="CDD:163678"
misc_feature complement(order(135182..135184,135272..135277))
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="catalytic residues [active]"
/db_xref="CDD:163678"
misc_feature complement(order(134702..134704,134708..134710))
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163678"
misc_feature complement(133814..134209)
/gene="leuA"
/locus_tag="SeAg_B0129"
/note="LeuA allosteric (dimerisation) domain; Region:
LeuA_dimer; pfam08502"
/db_xref="CDD:203962"
misc_feature complement(135354..135501)
/note="Leucine operon leader"
gene 136144..137088
/gene="leuO"
/locus_tag="SeAg_B0131"
/db_xref="GeneID:6797023"
CDS 136144..137088
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="activator for leuABCD operon; member of LysR family
of transcriptional activators"
/codon_start=1
/transl_table=11
/product="leucine transcriptional activator"
/protein_id="YP_002145100.2"
/db_xref="GI:449785014"
/db_xref="GeneID:6797023"
/translation="MPEVKTEKPHLLDMGKPQLRMVDLNLLTVFDAVMQEQNITRAAH
TLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
SGFEPTSSERVFNLCVCSPLDNILTSQIYNRVEKIAPNIHVVFKASLNQNTEHQLRYQ
ETEFVISYEEFRRPEFTSVPLFKDEMVLVASRKHPRISGPLLEGDVYNEQHAVVSLDR
YASFSQPWYDTPDKQSSVAYQGMALISVLNVVSQTHLVAIAPRWLAEEFAESLDLQIL
PLPLKLNSRTCYLSWHEAAGRDKGHQWMEDLLVSVCKR"
misc_feature 136144..137085
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="leucine transcriptional activator; Reviewed;
Region: leuO; PRK09508"
/db_xref="CDD:181918"
misc_feature 136213..136389
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 136480..137076
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator LeuO, an activator of
leucine synthesis operon, contains the type 2 periplasmic
binding fold; Region: PBP2_LeuO; cd08466"
/db_xref="CDD:176155"
misc_feature order(136498..136500,136504..136509,136519..136521,
136693..136695,136801..136803,137002..137004)
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176155"
misc_feature order(136501..136503,136510..136515,136522..136527,
136534..136539,136543..136548,136555..136560,
136564..136578,136582..136584,136771..136773,
136852..136866,136873..136878,136885..136890,
136897..136899,136939..136941)
/gene="leuO"
/locus_tag="SeAg_B0131"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176155"
gene 137380..139134
/gene="ilvB"
/locus_tag="SeAg_B0132"
/db_xref="GeneID:6794396"
CDS 137380..139134
/gene="ilvB"
/locus_tag="SeAg_B0132"
/EC_number="2.2.1.6"
/note="'catalyzes the formation of 2-acetolactate from
pyruvate, leucine sensitive'"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 3 catalytic subunit"
/protein_id="YP_002145101.1"
/db_xref="GI:197248826"
/db_xref="GeneID:6794396"
/translation="MMTGIKWRQAVEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIY
DALHTVGGIDHVLVRHEQAAVHMADGLARATGDVGVVLVTSGPGATNAITGIATAYMD
SIPLVILSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAA
SGRPGPVVVDLPKDILNPAKKMPYVWPETVSMRSYNPTTSGHKGQIKRALQTLASAKK
PVVYVGGGAISAACYVPLRHIIETFNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEA
NMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVNADIPVVGDA
RLVLEQMLELLAQDAPSQPQDDIRDWWQQIESWRARQCLKYDAESESIKPQAVIETLW
RLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPKE
MVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYM
QSLPDFVRLAEAYGHVGLQINRPDELESKLSEALEHVRNNRLVFVDVTVDGSEHVYPM
QIRGGGMDEMWLSKTERT"
misc_feature 137410..139131
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="acetolactate synthase 3 catalytic subunit;
Validated; Region: PRK07979"
/db_xref="CDD:181185"
misc_feature 137431..137898
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(137470..137472,137485..137490,137500..137502,
137512..137514,137539..137559,137566..137568,
137575..137580,137587..137592,137596..137604,
137638..137640,137659..137661,137671..137673,
137680..137685)
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(137485..137493,137500..137502,137512..137514,
137542..137544,137548..137559,137563..137565,
137638..137640,137647..137652,137656..137661,
137668..137670,137770..137772,137779..137781)
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(137485..137487,137560..137562,137638..137640,
137650..137652)
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 137995..138402
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 138523..139077
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the condensation
of two molecules of pyruvate to give the...; Region:
TPP_AHAS; cd02015"
/db_xref="CDD:48178"
misc_feature order(138592..138603,138670..138672,138676..138678,
138751..138759,138766..138768,138832..138834)
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48178"
misc_feature order(138661..138663,138670..138672,138676..138678,
138763..138768,138772..138777,138796..138798,
138913..138918,138928..138930,138937..138939)
/gene="ilvB"
/locus_tag="SeAg_B0132"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48178"
gene 139134..139628
/gene="ilvH"
/locus_tag="SeAg_B0133"
/db_xref="GeneID:6796628"
CDS 139134..139628
/gene="ilvH"
/locus_tag="SeAg_B0133"
/EC_number="2.2.1.6"
/note="'with IlvI catalyzes the formation of
2-acetolactate from pyruvate, the small subunit is
required for full activity and valine sensitivity; E.coli
produces 3 isoenzymes of acetolactate synthase which
differ in specificity to substrates, valine sensitivity
and affinity for cofactors; also known as acetolactate
synthase 3 small subunit'"
/codon_start=1
/transl_table=11
/product="acetolactate synthase 3 regulatory subunit"
/protein_id="YP_002145102.1"
/db_xref="GI:197248052"
/db_xref="GeneID:6796628"
/translation="MMRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTL
SRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEV
KRNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSRGD
KIMR"
misc_feature 139137..139622
/gene="ilvH"
/locus_tag="SeAg_B0133"
/note="acetolactate synthase 3 regulatory subunit;
Reviewed; Region: ilvH; PRK11895"
/db_xref="CDD:183365"
misc_feature 139143..139358
/gene="ilvH"
/locus_tag="SeAg_B0133"
/note="N-terminal ACT domain of the Escherichia coli
IlvH-like regulatory subunit of acetohydroxyacid synthase
(AHAS); Region: ACT_AHAS; cd04878"
/db_xref="CDD:153150"
misc_feature order(139161..139163,139167..139169,139182..139184,
139221..139226,139239..139241,139266..139268)
/gene="ilvH"
/locus_tag="SeAg_B0133"
/note="putative valine binding site [chemical binding];
other site"
/db_xref="CDD:153150"
misc_feature order(139173..139178,139185..139187,139206..139208,
139215..139217,139227..139241,139269..139271)
/gene="ilvH"
/locus_tag="SeAg_B0133"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153150"
misc_feature 139383..139610
/gene="ilvH"
/locus_tag="SeAg_B0133"
/note="Small subunit of acetolactate synthase; Region:
ALS_ss_C; pfam10369"
/db_xref="CDD:204463"
gene complement(139618..139740)
/locus_tag="SeAg_B0134"
/db_xref="GeneID:6795171"
CDS complement(139618..139740)
/locus_tag="SeAg_B0134"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145103.1"
/db_xref="GI:197248162"
/db_xref="GeneID:6795171"
/translation="MADIRQTCLMALRLSDLGQISACRPDKTHARRHPANLLSA"
gene 139912..140916
/gene="fruR"
/locus_tag="SeAg_B0135"
/db_xref="GeneID:6793102"
CDS 139912..140916
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="binds D-fructose as an inducer; involved in
regulation of operons for central pathways of carbon
metabolism"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator FruR"
/protein_id="YP_002145104.1"
/db_xref="GI:197247480"
/db_xref="GeneID:6793102"
/translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV
GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVNFLYAN
SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDH
ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRS
"
misc_feature 139912..140895
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="DNA-binding transcriptional regulator FruR;
Provisional; Region: PRK11303"
/db_xref="CDD:236897"
misc_feature 139924..140085
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(139945..139959,139963..139968,139975..139977,
139999..140004,140011..140013,140050..140052,
140059..140061,140068..140073,140077..140082)
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 140050..140079
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 140098..140889
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="Ligand binding domain of DNA transcription
repressor specific for fructose (FruR) and its close
homologs; Region: PBP1_FruR; cd06274"
/db_xref="CDD:107269"
misc_feature order(140122..140124,140152..140157,140161..140166,
140173..140175,140188..140190,140197..140199,
140203..140205,140257..140259,140662..140664,
140752..140754,140758..140760)
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107269"
misc_feature order(140134..140136,140146..140148,140347..140352,
140383..140394,140500..140502,140647..140649,
140731..140733)
/gene="fruR"
/locus_tag="SeAg_B0135"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107269"
gene 141522..141980
/gene="mraZ"
/locus_tag="SeAg_B0136"
/db_xref="GeneID:6796145"
CDS 141522..141980
/gene="mraZ"
/locus_tag="SeAg_B0136"
/note="MraZ; UPF0040; crystal structure shows similarity
to AbrB"
/codon_start=1
/transl_table=11
/product="cell division protein MraZ"
/protein_id="YP_002145105.1"
/db_xref="GI:197249345"
/db_xref="GeneID:6796145"
/translation="MFRGATLVNLDSKGRLTVPTRYREQLIESATGQMVCTIDIHHPC
LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
GLTKEVMLVGQFNKFELWDETTWYQQVKEDIDAEQSATETLSERLQDLSL"
misc_feature 141522..141974
/gene="mraZ"
/locus_tag="SeAg_B0136"
/note="mraZ protein; Region: TIGR00242"
/db_xref="CDD:129345"
misc_feature 141522..141749
/gene="mraZ"
/locus_tag="SeAg_B0136"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
misc_feature 141750..141968
/gene="mraZ"
/locus_tag="SeAg_B0136"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
gene 141982..142923
/gene="mraW"
/locus_tag="SeAg_B0137"
/db_xref="GeneID:6795350"
CDS 141982..142923
/gene="mraW"
/locus_tag="SeAg_B0137"
/EC_number="2.1.1.-"
/note="identified by match to protein family HMM PF01795;
match to protein family HMM TIGR00006"
/codon_start=1
/transl_table=11
/product="S-adenosyl-methyltransferase MraW"
/protein_id="YP_002145106.1"
/db_xref="GI:197248687"
/db_xref="GeneID:6795350"
/translation="MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
LGEEGRLLAIDRDPQAIAVAQTINDPRFSIIHGPFSALADYVAERELTGKIDGILLDL
GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERF
AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
IEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL
GGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA"
misc_feature 141991..142914
/gene="mraW"
/locus_tag="SeAg_B0137"
/note="16S rRNA (cytosine(1402)-N(4))-methyltransferase;
Region: TIGR00006"
/db_xref="CDD:232778"
misc_feature 141994..142917
/gene="mraW"
/locus_tag="SeAg_B0137"
/note="16S rRNA m(4)C1402 methyltranserfase; Provisional;
Region: PRK00050"
/db_xref="CDD:234597"
gene 142920..143285
/gene="ftsL"
/locus_tag="SeAg_B0138"
/db_xref="GeneID:6795574"
CDS 142920..143285
/gene="ftsL"
/locus_tag="SeAg_B0138"
/note="membrane bound cell division protein at septum
containing leucine zipper motif"
/codon_start=1
/transl_table=11
/product="cell division protein FtsL"
/protein_id="YP_002145107.1"
/db_xref="GI:197250573"
/db_xref="GeneID:6795574"
/translation="MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRFGKLPLCLFI
CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
EKLQMQHVDPSQENIVVQK"
misc_feature 142968..143282
/gene="ftsL"
/locus_tag="SeAg_B0138"
/note="cell division protein FtsL; Provisional; Region:
PRK10772"
/db_xref="CDD:182717"
gene 143301..145067
/gene="ftsI"
/locus_tag="SeAg_B0139"
/db_xref="GeneID:6794490"
CDS 143301..145067
/gene="ftsI"
/locus_tag="SeAg_B0139"
/EC_number="2.4.1.129"
/note="identified by match to protein family HMM PF00905;
match to protein family HMM PF03717"
/codon_start=1
/transl_table=11
/product="peptidoglycan synthetase FtsI"
/protein_id="YP_002145108.1"
/db_xref="GI:197249986"
/db_xref="GeneID:6794490"
/translation="MKAAAKTQKSKRQEEQTNFISWRFALLCGCILLALVFLLGRAAW
LQIIAPDMLVRQGDMRSLRVQEVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
GISVGDRWKALSTALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
NSPSYNPNNLAGTPKDAMRNRTITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPY
RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
PPVPGERIFPESTVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
ALATGEKNEFVINQGEGTGGRS"
misc_feature 143304..145037
/gene="ftsI"
/locus_tag="SeAg_B0139"
/note="peptidoglycan synthase FtsI; Provisional; Region:
PRK15105"
/db_xref="CDD:185060"
gene 145054..146541
/gene="murE"
/locus_tag="SeAg_B0140"
/db_xref="GeneID:6796927"
CDS 145054..146541
/gene="murE"
/locus_tag="SeAg_B0140"
/EC_number="6.3.2.13"
/note="involved in cell wall formation; peptidoglycan
synthesis; cytoplasmic enzyme; catalyzes the addition of
meso-diaminopimelic acid to the nucleotide precursor
UDP-N-aceylmuramoyl-l-alanyl-d-glutamate"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="YP_002145109.1"
/db_xref="GI:197251914"
/db_xref="GeneID:6796927"
/translation="MADRNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGH
QADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFY
HEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
SAVDVQHVLANLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
AHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKA
EAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAA
RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
GKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTN
AIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYSDRVTAARLLGVIA"
misc_feature 145054..146535
/gene="murE"
/locus_tag="SeAg_B0140"
/note="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional; Region: murE;
PRK00139"
/db_xref="CDD:178894"
misc_feature 145126..145359
/gene="murE"
/locus_tag="SeAg_B0140"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 145426..145980
/gene="murE"
/locus_tag="SeAg_B0140"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 146068..146328
/gene="murE"
/locus_tag="SeAg_B0140"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 146538..147896
/gene="murF"
/locus_tag="SeAg_B0141"
/db_xref="GeneID:6794307"
CDS 146538..147896
/gene="murF"
/locus_tag="SeAg_B0141"
/EC_number="6.3.2.10"
/note="identified by match to protein family HMM PF01225;
match to protein family HMM PF02875; match to protein
family HMM PF08245; match to protein family HMM TIGR01143"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase"
/protein_id="YP_002145110.1"
/db_xref="GI:197251461"
/db_xref="GeneID:6794307"
/translation="MISVTLSKIADVLGAEHRGADLTLDTVITDTRKVTPGCLFVALK
GERFDAHDFADKAKANGAGALLVSRPLDIDLPQVIVKDTRQAFGQLAAWVRMQVPARV
VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELG
ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMN
ADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP
LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYN
ANVGSMTAAVQVLSEMPGYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLSTGK
LSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEKG
SC"
misc_feature 146538..147893
/gene="murF"
/locus_tag="SeAg_B0141"
/note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed; Region: murF; PRK10773"
/db_xref="CDD:182718"
misc_feature 146622..146822
/gene="murF"
/locus_tag="SeAg_B0141"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 146853..147386
/gene="murF"
/locus_tag="SeAg_B0141"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 147477..147725
/gene="murF"
/locus_tag="SeAg_B0141"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 147890..148972
/gene="mraY"
/locus_tag="SeAg_B0142"
/db_xref="GeneID:6792470"
CDS 147890..148972
/gene="mraY"
/locus_tag="SeAg_B0142"
/EC_number="2.7.8.13"
/note="First step of the lipid cycle reactions in the
biosynthesis of the cell wall peptidoglycan"
/codon_start=1
/transl_table=11
/product="phospho-N-acetylmuramoyl-pentapeptide-
transferase"
/protein_id="YP_002145111.1"
/db_xref="GI:197248344"
/db_xref="GeneID:6792470"
/translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
IARLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
VVLIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATQL
VVPFFKDVMPQLGLFYILLSYFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWA
TGNMNFANYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
EPRVIVRFWIISLMLVLIGLATLKVR"
misc_feature 147935..148969
/gene="mraY"
/locus_tag="SeAg_B0142"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional; Region: mraY; PRK00108"
/db_xref="CDD:178869"
misc_feature 148070..148957
/gene="mraY"
/locus_tag="SeAg_B0142"
/note="Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of...;
Region: GT_MraY; cd06852"
/db_xref="CDD:133462"
misc_feature 148232..148237
/gene="mraY"
/locus_tag="SeAg_B0142"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133462"
misc_feature 148679..148690
/gene="mraY"
/locus_tag="SeAg_B0142"
/note="putative catalytic motif [active]"
/db_xref="CDD:133462"
misc_feature order(148838..148840,148856..148870)
/gene="mraY"
/locus_tag="SeAg_B0142"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133462"
gene 148975..150291
/gene="murD"
/locus_tag="SeAg_B0143"
/db_xref="GeneID:6794900"
CDS 148975..150291
/gene="murD"
/locus_tag="SeAg_B0143"
/EC_number="6.3.2.9"
/note="UDP-N-acetylmuramoylalanine--D-glutamate ligase;
involved in peptidoglycan biosynthesis; cytoplasmic;
catalyzes the addition of glutamate to the nucleotide
precursor UDP-N-acetylmuramoyl-L-alanine during cell wall
formation"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase"
/protein_id="YP_002145112.1"
/db_xref="GI:197248149"
/db_xref="GeneID:6794900"
/translation="MADYQDKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVTPPGL
DKLPQEVERHVGGLNDEWLLAADLIVASPGIALAHPSLSAAASAGVEIVGDIELFCRE
AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDADRELYVLELS
SFQLETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYEKAKVCVVNADDALT
MPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
LALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVGSTEAALNGL
HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYCFGRDGAQFAALRPEIAQQTETME
EAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDVFTRLAKELG"
misc_feature 148975..150288
/gene="murD"
/locus_tag="SeAg_B0143"
/note="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional; Region: murD; PRK03806"
/db_xref="CDD:179651"
misc_feature 149305..149784
/gene="murD"
/locus_tag="SeAg_B0143"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 149878..>149970
/gene="murD"
/locus_tag="SeAg_B0143"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 150291..151535
/gene="ftsW"
/locus_tag="SeAg_B0144"
/db_xref="GeneID:6793089"
CDS 150291..151535
/gene="ftsW"
/locus_tag="SeAg_B0144"
/note="integral membrane protein involved in stabilizing
FstZ ring during cell division"
/codon_start=1
/transl_table=11
/product="cell division protein FtsW"
/protein_id="YP_002145113.1"
/db_xref="GI:197248187"
/db_xref="GeneID:6793089"
/translation="MRLSLPRLRMPRVPGFGLLAWLFAALKGWVMASRDKDADSLIMY
DRTLLWLTFGLAAIGFVMVTSASMPVGQRLANDPFLFAKRDALYIFLAFCLAMVTLRL
PMTFWQKYSTTMLIASIIMLLIVLVVGSSVNGASRWIALGPLRIQPAEFTKLSLFCYL
ANYLVRKVDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK
LWQFIAIIGMGISAVILLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEI
WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKAL
EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
FLLRIDYETRLEKAQAFTRGSR"
misc_feature 150378..151532
/gene="ftsW"
/locus_tag="SeAg_B0144"
/note="cell division protein FtsW; Provisional; Region:
PRK10774"
/db_xref="CDD:182719"
gene 151532..152599
/gene="murG"
/locus_tag="SeAg_B0145"
/db_xref="GeneID:6793127"
CDS 151532..152599
/gene="murG"
/locus_tag="SeAg_B0145"
/EC_number="2.4.1.227"
/note="UDP-N-acetylglucosamine--N-acetylmuramyl-
(pentapeptide) pyrophosphoryl-undecaprenol
N-acetylglucosamine transferase; involved in cell wall
formation; inner membrane-associated; last step of
peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-diphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase"
/protein_id="YP_002145114.1"
/db_xref="GI:197250832"
/db_xref="GeneID:6793127"
/translation="MSGQPKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
MEADLVPKHGIDIDFIRISGLRGKGVKALLAAPLRIFNAWRQARAIMKRFKPDVVLGM
GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNQWLAKIATTVMQAFPGAFPNAEVVGN
PVRTDVLALPLPQVRLAGRDGPIRVLVVGGSQGARVLNQTMPQVAARLGDTVTIWHQS
GKGAQLTVEQAYAGAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
IFVPFQHKDRQQYWNALPLENAGAAKIFEQPQFTVEAVADTLAGWSREALLTMAERAR
AVSIPDATERVASEVSRVART"
misc_feature 151544..152593
/gene="murG"
/locus_tag="SeAg_B0145"
/note="undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional; Region: murG;
PRK00726"
/db_xref="CDD:179100"
misc_feature 151550..152575
/gene="murG"
/locus_tag="SeAg_B0145"
/note="MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4
hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide...; Region: GT1_MurG; cd03785"
/db_xref="CDD:99961"
misc_feature order(151580..151582,151910..151912,152102..152104,
152180..152182,152258..152260,152270..152272,
152315..152326,152333..152335,152372..152374,
152390..152395,152402..152404)
/gene="murG"
/locus_tag="SeAg_B0145"
/note="active site"
/db_xref="CDD:99961"
misc_feature order(151751..151753,151760..151762,151793..151795,
151877..151879,151952..151954)
/gene="murG"
/locus_tag="SeAg_B0145"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99961"
gene 152718..154193
/gene="murC"
/locus_tag="SeAg_B0146"
/db_xref="GeneID:6795735"
CDS 152718..154193
/gene="murC"
/locus_tag="SeAg_B0146"
/EC_number="6.3.2.8"
/note="Catalyzes the formation of
UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate
and L-alanine in peptidoglycan synthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_002145115.1"
/db_xref="GI:197247646"
/db_xref="GeneID:6795735"
/translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
QISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
VHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFL
HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEF
PLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYD
DFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATML
APVLTGNDLILVQGAGNVGKIARYLSEIKLKPQIQEEEQHG"
misc_feature 152754..154166
/gene="murC"
/locus_tag="SeAg_B0146"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:234757"
misc_feature 152778..153077
/gene="murC"
/locus_tag="SeAg_B0146"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature 153093..153593
/gene="murC"
/locus_tag="SeAg_B0146"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 153723..153977
/gene="murC"
/locus_tag="SeAg_B0146"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 154186..155106
/gene="ddl"
/locus_tag="SeAg_B0147"
/db_xref="GeneID:6794746"
CDS 154186..155106
/gene="ddl"
/locus_tag="SeAg_B0147"
/EC_number="6.3.2.4"
/note="D-alanine--D-alanine ligase; DdlA; DdlB;
cytoplasmic; catalyzes the formation of D-alanyl-D-alanine
from two D-alanines in peptidoglycan synthesis; there are
two forms of this enzyme in Escherichia coli"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="YP_002145116.1"
/db_xref="GI:197247549"
/db_xref="GeneID:6794746"
/translation="MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQE
VDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL
LWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEE
NALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLS
DETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPG
MTSHSLVPMAARQAGMSFSQLVVRILELAD"
misc_feature 154186..155103
/gene="ddl"
/locus_tag="SeAg_B0147"
/note="D-alanine--D-alanine ligase; Reviewed; Region: ddl;
PRK01372"
/db_xref="CDD:179288"
misc_feature 154195..154443
/gene="ddl"
/locus_tag="SeAg_B0147"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature 154492..155094
/gene="ddl"
/locus_tag="SeAg_B0147"
/note="D-ala D-ala ligase C-terminus; Region:
Dala_Dala_lig_C; pfam07478"
/db_xref="CDD:203643"
gene 155108..155938
/gene="ftsQ"
/locus_tag="SeAg_B0148"
/db_xref="GeneID:6793192"
CDS 155108..155938
/gene="ftsQ"
/locus_tag="SeAg_B0148"
/note="involved in septum formation"
/codon_start=1
/transl_table=11
/product="cell division protein FtsQ"
/protein_id="YP_002145117.1"
/db_xref="GI:197249004"
/db_xref="GeneID:6793192"
/translation="MSQAALNTRNSDEETPSSRRNNGTRLAGILFLLTVLCTVFVSGW
VVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQAILALGAPGTFMTQDVNIIQSQIER
LPWIKQASVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPSDRIGKQVLPML
YGPEGSASEVLQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLNNGIKLNLGRGDTMK
RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESNQQQNQAQAEQQ
"
misc_feature 155108..155890
/gene="ftsQ"
/locus_tag="SeAg_B0148"
/note="cell division protein FtsQ; Provisional; Region:
PRK10775"
/db_xref="CDD:182720"
misc_feature 155279..155485
/gene="ftsQ"
/locus_tag="SeAg_B0148"
/note="POTRA domain, FtsQ-type; Region: POTRA_1;
pfam08478"
/db_xref="CDD:149506"
misc_feature 155492..155848
/gene="ftsQ"
/locus_tag="SeAg_B0148"
/note="Cell division protein FtsQ; Region: FtsQ;
pfam03799"
/db_xref="CDD:202772"
gene 155935..157197
/gene="ftsA"
/locus_tag="SeAg_B0149"
/db_xref="GeneID:6797298"
CDS 155935..157197
/gene="ftsA"
/locus_tag="SeAg_B0149"
/note="ATP-binding involved in recruitment of FtsK to Z
ring; essential cell division protein; colocalizes with
FtsZ through direct interaction to the septal ring
structure; structurally similar to eukaryotic actin; binds
directly to the cell membrane"
/codon_start=1
/transl_table=11
/product="cell division protein FtsA"
/protein_id="YP_002145118.1"
/db_xref="GI:197249642"
/db_xref="GeneID:6797298"
/translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
ITCHNDMAKNIVKAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDI
AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVL
TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
GEAEVEKRVTASVGSWIKRLNSWLRKEF"
misc_feature 155935..157194
/gene="ftsA"
/locus_tag="SeAg_B0149"
/note="cell division protein FtsA; Reviewed; Region: ftsA;
PRK09472"
/db_xref="CDD:181887"
misc_feature 156235..>156618
/gene="ftsA"
/locus_tag="SeAg_B0149"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature 156550..157011
/gene="ftsA"
/locus_tag="SeAg_B0149"
/note="Cell division protein FtsA; Region: FtsA;
pfam14450"
/db_xref="CDD:222760"
STS 156486..156722
/gene="ftsA"
/locus_tag="SeAg_B0149"
/standard_name="G34047"
/db_xref="UniSTS:10389"
gene 157258..158409
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/db_xref="GeneID:6792743"
CDS 157258..158409
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="'GTPase; similar structure to tubulin; forms
ring-shaped polymers at the site of cell division; other
proteins such as FtsA, ZipA, and ZapA, interact with and
regulate FtsZ function'"
/codon_start=1
/transl_table=11
/product="cell division protein FtsZ"
/protein_id="YP_002145119.1"
/db_xref="GI:197249720"
/db_xref="GeneID:6792743"
/translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALEGADMVFIAA
GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
VLDRYQQHGMAPLTQEQKTVAKVVNDNTPQAAKEPDYLDIPAFLRKQAD"
misc_feature 157258..158406
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="cell division protein FtsZ; Validated; Region:
PRK09330"
/db_xref="CDD:181781"
misc_feature 157327..158199
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those formed
by tubulin. FtsZ forms a ring-shaped septum at...; Region:
FtsZ_type1; cd02201"
/db_xref="CDD:100021"
misc_feature order(157327..157329,157399..157401,157564..157584,
157657..157662,157681..157683,157750..157752,
157801..157803,157810..157815,157822..157824)
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:100021"
misc_feature order(157873..157878,157882..157884,158062..158073,
158080..158082)
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="SulA interaction site; other site"
/db_xref="CDD:100021"
misc_feature <158344..158406
/gene="ftsZ"
/locus_tag="SeAg_B0150"
/note="cell division protein FtsZ, alphaProteobacterial
C-terminal extension; Region: FtsZ_alphas_C; TIGR03483"
/db_xref="CDD:163287"
gene 158510..159427
/gene="lpxC"
/locus_tag="SeAg_B0151"
/db_xref="GeneID:6795664"
CDS 158510..159427
/gene="lpxC"
/locus_tag="SeAg_B0151"
/EC_number="3.5.1.-"
/note="zinc-dependent; catalyzes the deacetylation of
UDP-(3-O-acyl)-N-acetylglucosamine to
UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second
step of lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="YP_002145120.1"
/db_xref="GI:197249844"
/db_xref="GeneID:6795664"
/translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFRPYNGFTLDFTID
FNHPAIDSSSQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL
AKQEAWEFVTFQDDAELPLAFKAPSTVLA"
misc_feature 158510..159406
/gene="lpxC"
/locus_tag="SeAg_B0151"
/note="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed; Region: lpxC; PRK13186"
/db_xref="CDD:237294"
misc_feature 158513..159349
/gene="lpxC"
/locus_tag="SeAg_B0151"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene 159706..160203
/gene="secM"
/locus_tag="SeAg_B0152"
/note="secretion monitor protein; this gene contains a
frame shift which may be the result of sequencing error;
identified by match to protein family HMM PF06558"
/pseudogene="unknown"
/db_xref="GeneID:6793037"
gene 160265..162970
/gene="secA"
/locus_tag="SeAg_B0153"
/db_xref="GeneID:6793638"
CDS 160265..162970
/gene="secA"
/locus_tag="SeAg_B0153"
/note="functions in protein export; can interact with
acidic membrane phospholipids and the SecYEG protein
complex; binds to preproteins; binds to ATP and undergoes
a conformational change to promote membrane insertion of
SecA/bound preprotein; ATP hydrolysis appears to drive
release of the preprotein from SecA and deinsertion of
SecA from the membrane; additional proteins SecD/F/YajC
aid SecA recycling; exists in an equilibrium between
monomers and dimers; may possibly form higher order
oligomers; proteins in this cluster correspond SecA1;
SecA2 is not essential and seems to play a role in
secretion of a subset of proteins"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecA"
/protein_id="YP_002145121.1"
/db_xref="GI:197248857"
/db_xref="GeneID:6793638"
/translation="MLIKLLTKVFGSRNDRTLRRMRKAVSLINAMEPEMEKLSDDELK
AKTNEFRARIEKGESVESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEM
RTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMSVGINLPG
MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
ARTPLIISGPAEDSSEMYKKVNKIIPHLIRQEKEDSDTFQGEGHFSVDEKARQVNLTE
RGLVLIEELLVQEGIMDEGESLYSPGNIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
IVDEHTGRTMQGRRWSDGLHQAVEAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTG
TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTANGQ
PVLVGTISIEKSEVVSRELTKAGIKHNVLNAKFHANEAGIVAQAGYPAAVTIATNMAG
RGTDIMLGGSWQAEVAALEAPTEEQIAQIKADWQVRHDAVLAAGGLHIIGTERHESRR
IDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSDTINSIRED
VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLEMPIAEWLDKEPELHEETLRERIL
AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
PKQEYKRESFAMFAAMLESLKYEVISTLSKVQVRMPEEVEAMEMQRREEAERLAQMQQ
LSHQDDDAAVAADLAAQTGERKIGRNDPCPCGSGKKYKQCHGRLS"
misc_feature 160268..162967
/gene="secA"
/locus_tag="SeAg_B0153"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 160946..161338
/gene="secA"
/locus_tag="SeAg_B0153"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 162905..162961
/gene="secA"
/locus_tag="SeAg_B0153"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 163122..163517
/locus_tag="SeAg_B0154"
/db_xref="GeneID:6795011"
CDS 163122..163517
/locus_tag="SeAg_B0154"
/EC_number="3.6.1.-"
/note="identified by match to protein family HMM PF00293;
match to protein family HMM TIGR00586"
/codon_start=1
/transl_table=11
/product="nucleoside triphosphate pyrophosphohydrolase"
/protein_id="YP_002145122.1"
/db_xref="GI:197250671"
/db_xref="GeneID:6795011"
/translation="MKKLQIAVGIIRNPNDEIFITRRAADAHMANKLEFPGGKIEADE
TPEQALIRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQPG
RWIAQNALNTEDFPPANEPIIRKLRQFAS"
misc_feature 163131..163502
/locus_tag="SeAg_B0154"
/note="The MutT pyrophosphohydrolase is a prototypical
Nudix hydrolase that catalyzes the hydrolysis of
nucleoside and deoxynucleoside triphosphates (NTPs and
dNTPs) by substitution at a beta-phosphorus to yield a
nucleotide monophosphate (NMP) and inorganic...; Region:
MutT_pyrophosphohydrolase; cd03425"
/db_xref="CDD:72883"
misc_feature order(163131..163133,163137..163139,163233..163238,
163242..163244,163278..163280,163287..163292,
163359..163361,163413..163415,163476..163478)
/locus_tag="SeAg_B0154"
/note="active site"
/db_xref="CDD:72883"
misc_feature order(163131..163133,163137..163139,163233..163238,
163353..163355,163359..163361,163476..163478)
/locus_tag="SeAg_B0154"
/note="8-oxo-dGMP binding site [chemical binding]; other
site"
/db_xref="CDD:72883"
misc_feature 163233..163301
/locus_tag="SeAg_B0154"
/note="nudix motif; other site"
/db_xref="CDD:72883"
misc_feature order(163278..163280,163287..163292)
/locus_tag="SeAg_B0154"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:72883"
gene complement(163551..164540)
/locus_tag="SeAg_B0155"
/db_xref="GeneID:6794044"
CDS complement(163551..164540)
/locus_tag="SeAg_B0155"
/EC_number="1.1.1.-"
/note="identified by match to protein family HMM PF00248"
/codon_start=1
/transl_table=11
/product="aldo/keto reductase"
/protein_id="YP_002145123.1"
/db_xref="GI:197247778"
/db_xref="GeneID:6794044"
/translation="MQYRTLGANGPRVSAIGLGCMGMSAFYGAHDDSTSIKTLHYALD
QGVTLLDTADMYGPYTNERLVGRAIADRRDRVFLATKFGIVLDPANPMARGVNGRPEY
VRRSCEQSLQRLGVDHIDLYYQHRVDPSVPIEETVGAMADLVREGKVRYLGLSEASTQ
TLERAHNVHPITALQSEYSLWSREAEISALSTCERLGIGFVAYSPLGRGFLTGTIKTP
EDFAANDFRRTNPRFMGENFSRNLRLAEAIKQMAREKECTPAQLALAWLLARNRHIVP
IPGTRHCARVDENLGALSLILSPQELAAIEAVFPHDAAAGPRYWPEIMSTLNR"
misc_feature complement(163590..164540)
/locus_tag="SeAg_B0155"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature complement(163617..164534)
/locus_tag="SeAg_B0155"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature complement(order(163674..163679,163686..163688,
163701..163712,163761..163763,163917..163934,
164016..164018,164073..164078,164163..164168,
164298..164300,164373..164375,164388..164390,
164478..164486))
/locus_tag="SeAg_B0155"
/note="active site"
/db_xref="CDD:119408"
misc_feature complement(order(164166..164168,164298..164300,
164373..164375,164388..164390))
/locus_tag="SeAg_B0155"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 164644..165567
/locus_tag="SeAg_B0156"
/db_xref="GeneID:6793267"
CDS 164644..165567
/locus_tag="SeAg_B0156"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002145124.1"
/db_xref="GI:197247928"
/db_xref="GeneID:6793267"
/translation="MRHDVMSILHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLED
ELGVKLLNRTTRRVGLTEAGHAFLASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPR
TAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLDMNVVPL
GDVLRPAIVASPAYLARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGAQRLEIT
PEAALMVNDKALRLSAARDGAGLTYVFEQDVHEDLQDGRLCSVLEEWLPAADRFYLYY
PGRAHMAPKLRVFIDYFCHKAILPSQQSHHC"
misc_feature 164668..165522
/locus_tag="SeAg_B0156"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 164668..164838
/locus_tag="SeAg_B0156"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 164917..165522
/locus_tag="SeAg_B0156"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature order(164953..164955,164965..164967,165082..165084,
165124..165126,165133..165135,165325..165327,
165376..165378,165457..165459)
/locus_tag="SeAg_B0156"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature order(164956..164961,164971..164976,164980..164985,
164992..164994,165004..165006,165010..165030,
165214..165216,165307..165321,165340..165345,
165352..165354)
/locus_tag="SeAg_B0156"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176163"
gene complement(165564..165755)
/locus_tag="SeAg_B0157"
/db_xref="GeneID:6796849"
CDS complement(165564..165755)
/locus_tag="SeAg_B0157"
/note="identified by match to protein family HMM PF03884"
/codon_start=1
/transl_table=11
/product="zinc-binding protein"
/protein_id="YP_002145125.1"
/db_xref="GI:197248595"
/db_xref="GeneID:6796849"
/translation="MSDVTVVNCPTCGKPVVWGEISPFRPFCSKRCQLIDLGEWAAEE
KRIASSGDQSDSDDWSEER"
misc_feature complement(<165612..165755)
/locus_tag="SeAg_B0157"
/note="DNA gyrase inhibitor; Reviewed; Region: PRK00418"
/db_xref="CDD:234754"
gene complement(165765..166508)
/locus_tag="SeAg_B0158"
/db_xref="GeneID:6797044"
CDS complement(165765..166508)
/locus_tag="SeAg_B0158"
/note="identified by match to protein family HMM PF07072"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145126.1"
/db_xref="GI:197247589"
/db_xref="GeneID:6797044"
/translation="MHTQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFF
RNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPGVDQDRIEALRQQLKSAGSVL
ISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLAS
LNPLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLMLDSQLYPQISGH
KSRFAIRFMPLDSENGLVPERLDFELACC"
misc_feature complement(165768..166499)
/locus_tag="SeAg_B0158"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4582"
/db_xref="CDD:34220"
gene complement(166508..167128)
/gene="coaE"
/locus_tag="SeAg_B0160"
/db_xref="GeneID:6794686"
CDS complement(166508..167128)
/gene="coaE"
/locus_tag="SeAg_B0160"
/EC_number="2.7.1.24"
/note="catalyzes the phosphorylation of the 3'-hydroxyl
group of dephosphocoenzyme A to form coenzyme A; involved
in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_002145127.1"
/db_xref="GI:197251746"
/db_xref="GeneID:6794686"
/translation="MRYTVALTGGIGSGKSTVADAFADLGITVIDADIIARQMVEPGQ
PALNAIAEHFGSELIAADGTLRRRALRERIFSHPEEKAWLNALLHPLIQQETQRQFQQ
ATSPYVLWVVPLLVENRLYQKANRVLVVDVTPETQLIRTMQRDDVTREHVEHILAAQA
TREARLAVADDVIDNNGAPDAIASDVARLHASYLKLASQFVSQEKP"
misc_feature complement(166526..167128)
/gene="coaE"
/locus_tag="SeAg_B0160"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:223315"
misc_feature complement(166586..167116)
/gene="coaE"
/locus_tag="SeAg_B0160"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:238980"
misc_feature complement(order(166652..166654,166787..166792,
166862..166864,167030..167032,167105..167107))
/gene="coaE"
/locus_tag="SeAg_B0160"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:238980"
misc_feature complement(order(166604..166606,166709..166711,
167084..167089,167096..167104))
/gene="coaE"
/locus_tag="SeAg_B0160"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:238980"
gene 167354..168397
/gene="guaC"
/locus_tag="SeAg_B0161"
/db_xref="GeneID:6793639"
CDS 167354..168397
/gene="guaC"
/locus_tag="SeAg_B0161"
/EC_number="1.7.1.7"
/note="catalyzes the NADPH-dependent deamination of GMP to
inosine monophosphate"
/codon_start=1
/transl_table=11
/product="guanosine 5'-monophosphate oxidoreductase"
/protein_id="YP_002145128.1"
/db_xref="GI:197250913"
/db_xref="GeneID:6793639"
/translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQTW
SGVPIIAANMDTVGTFEMAQALAGFDILTAVHKHYTVEEWAAFINTASADVLKHVMVS
TGTSDADFEKTVQILALNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
DGGCTMPGDVAKAFGGGADFVMLGGMLAGHEESGGSVVEENGEKFMLFYGMSSESAMN
RHVGGVAKYRAAEGKTVKLPLRGPVGNTARDILGGLRSACTYVGASRLKELTKRTTFI
RVQEQENRIFNSL"
misc_feature 167354..168391
/gene="guaC"
/locus_tag="SeAg_B0161"
/note="guanosine 5'-monophosphate oxidoreductase;
Provisional; Region: PRK05096"
/db_xref="CDD:235343"
misc_feature 167378..168361
/gene="guaC"
/locus_tag="SeAg_B0161"
/note="IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate (IMP)
to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of...; Region:
IMPDH; cd00381"
/db_xref="CDD:238223"
misc_feature order(167507..167509,167903..167911,168008..168010,
168014..168016,168077..168082,168149..168151,
168155..168163,168218..168223)
/gene="guaC"
/locus_tag="SeAg_B0161"
/note="active site"
/db_xref="CDD:238223"
gene complement(168428..169630)
/locus_tag="SeAg_B0162"
/db_xref="GeneID:6794047"
CDS complement(168428..169630)
/locus_tag="SeAg_B0162"
/note="identified by match to protein family HMM PF00482"
/codon_start=1
/transl_table=11
/product="type IV pilin biogenesis protein"
/protein_id="YP_002145129.1"
/db_xref="GI:197250502"
/db_xref="GeneID:6794047"
/translation="MSVKQLWRWQGVNDKGQLEQDVVWADNRLALIITLQHQRIMPLR
IKRMGVNAALWKEEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAH
ELEQGVPFSSALVSWPQVFPPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVK
KALRYPVIILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSTWGW
LILFLTMLIAIAHRRVKQKPSWQAQRQRLLLRLPIMGRLIRGQKLAQIFTVLALTQSA
GIPFLQGLESAIESLGCPYWSQRLTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTG
EASGSLDIMLHNLARHHSETTLALADNLASLLEPALLIITGLIIGTLVVAMYLPIFHL
GDAMSGMG"
misc_feature complement(168440..169630)
/locus_tag="SeAg_B0162"
/note="type IV pilin biogenesis protein; Provisional;
Region: PRK10573"
/db_xref="CDD:182559"
misc_feature complement(169073..169444)
/locus_tag="SeAg_B0162"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:201255"
misc_feature complement(168467..168835)
/locus_tag="SeAg_B0162"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:201255"
gene complement(169620..171005)
/locus_tag="SeAg_B0163"
/db_xref="GeneID:6796714"
CDS complement(169620..171005)
/locus_tag="SeAg_B0163"
/note="identified by match to protein family HMM PF00437"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145130.1"
/db_xref="GI:197250845"
/db_xref="GeneID:6796714"
/translation="MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFA
TQKQIDIVCWTRQQMENHRHKPDQAPSTNAAKGGETAAQLLNQTLRSAMAKRSSDIHL
EPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL
TGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLV
LVTGPTGSGKTVTLYSALQTRNTPDINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNV
LRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNSTSETLIRLQQMGVA
RWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSALPRWQASGCQHCYHGF
YGRTALFEVLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCHAVEQGMTSFEE
ILRVLGMPHER"
misc_feature complement(169629..171005)
/locus_tag="SeAg_B0163"
/note="hypothetical protein; Provisional; Region:
PRK10436"
/db_xref="CDD:182459"
misc_feature complement(169821..170600)
/locus_tag="SeAg_B0163"
/note="PulE/GspE The type II secretory pathway is the main
terminal branch of the general secretory pathway (GSP).
It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which...; Region:
PulE-GspE; cd01129"
/db_xref="CDD:29995"
misc_feature complement(170319..170342)
/locus_tag="SeAg_B0163"
/note="Walker A motif; other site"
/db_xref="CDD:29995"
misc_feature complement(order(170130..170135,170253..170258,
170262..170264,170319..170327,170337..170339))
/locus_tag="SeAg_B0163"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29995"
misc_feature complement(170130..170147)
/locus_tag="SeAg_B0163"
/note="Walker B motif; other site"
/db_xref="CDD:29995"
gene complement(171015..171452)
/locus_tag="SeAg_B0164"
/db_xref="GeneID:6795748"
CDS complement(171015..171452)
/locus_tag="SeAg_B0164"
/note="identified by match to protein family HMM PF07963;
match to protein family HMM TIGR02532"
/codon_start=1
/transl_table=11
/product="major pilin subunit"
/protein_id="YP_002145131.1"
/db_xref="GI:197251731"
/db_xref="GeneID:6795748"
/translation="MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
TFVPYRTAVELCALEHGGTNTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSG
LSVIMTPAWDNANGITGWARNCNIQSDSALQQACEDVFRFDAN"
misc_feature complement(171018..171452)
/locus_tag="SeAg_B0164"
/note="putative major pilin subunit; Provisional; Region:
PRK10574"
/db_xref="CDD:182560"
misc_feature complement(<171408..>171446)
/locus_tag="SeAg_B0164"
/note="Type IV pilin N-term methylation site GFxxxE;
Region: N_methyl_2; cl06830"
/db_xref="CDD:214140"
misc_feature complement(171090..171305)
/locus_tag="SeAg_B0164"
/note="Pilin (bacterial filament); Region: Pilin;
pfam00114"
/db_xref="CDD:201012"
gene complement(171674..172609)
/gene="nadC"
/locus_tag="SeAg_B0165"
/db_xref="GeneID:6795550"
CDS complement(171674..172609)
/gene="nadC"
/locus_tag="SeAg_B0165"
/EC_number="2.4.2.19"
/note="'catalyzes the formation of
pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose
1-diphosphate from nictinate D-ribonucleotide'"
/codon_start=1
/transl_table=11
/product="quinolinate phosphoribosyltransferase"
/protein_id="YP_002145132.1"
/db_xref="GI:197247687"
/db_xref="GeneID:6795550"
/translation="MFLPYDSLAIWSFIMPPRRYNPDDRRDALLERINLDIPAAVAKA
LREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRL
TWHVDDGDAIHANQTVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQ
TQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLTDAFLIKENHIIASGSVRQAVEKAF
WLHPDVPVEVEVENLDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQARLEVSGNV
TAETLREFAETGVDFISVGALTKHVRALDLSMRFR"
misc_feature complement(171677..172528)
/gene="nadC"
/locus_tag="SeAg_B0165"
/note="quinolinate phosphoribosyltransferase; Validated;
Region: PRK09016"
/db_xref="CDD:181612"
misc_feature complement(171683..172495)
/gene="nadC"
/locus_tag="SeAg_B0165"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:29619"
misc_feature complement(order(171713..171715,171959..171961,
171992..171994,172001..172006,172010..172012,
172016..172018,172028..172033,172088..172093,
172103..172105,172109..172111,172199..172201,
172211..172216,172427..172432))
/gene="nadC"
/locus_tag="SeAg_B0165"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29619"
misc_feature complement(order(171713..171715,171722..171727,
171731..171733,171788..171793,171860..171862,
172040..172045,172106..172114))
/gene="nadC"
/locus_tag="SeAg_B0165"
/note="active site"
/db_xref="CDD:29619"
gene 172655..173218
/locus_tag="SeAg_B0166"
/db_xref="GeneID:6797085"
CDS 172655..173218
/locus_tag="SeAg_B0166"
/note="identified by match to protein family HMM PF01510"
/codon_start=1
/transl_table=11
/product="N-acetyl-anhydromuranmyl-L-alanine amidase"
/protein_id="YP_002145133.1"
/db_xref="GI:197248432"
/db_xref="GeneID:6797085"
/translation="MLPDKGWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFG
GPWIDALFTGTIDPDAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNY
QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRTLIACYPAIADNMTGHCNIAPD
RKTDPGPAFDWPRFRALVALSSHKEMT"
misc_feature 172661..>173215
/locus_tag="SeAg_B0166"
/note="N-acetyl-anhydromuramyl-L-alanine amidase [Cell
envelope biogenesis, outer membrane]; Region: ampD;
COG3023"
/db_xref="CDD:225567"
misc_feature 172733..173158
/locus_tag="SeAg_B0166"
/note="Peptidoglycan recognition proteins (PGRPs) are
pattern recognition receptors that bind, and in certain
cases, hydrolyze peptidoglycans (PGNs) of bacterial cell
walls. PGRPs have been divided into three classes: short
PGRPs (PGRP-S), that are small (20...; Region: PGRP;
cd06583"
/db_xref="CDD:133475"
misc_feature order(172754..172756,172874..172876,173114..173116,
173138..173140,173144..173146)
/locus_tag="SeAg_B0166"
/note="amidase catalytic site [active]"
/db_xref="CDD:133475"
misc_feature order(172754..172756,173114..173116,173144..173146)
/locus_tag="SeAg_B0166"
/note="Zn binding residues [ion binding]; other site"
/db_xref="CDD:133475"
misc_feature order(172757..172762,172832..172834,172874..172876,
172916..172918,172937..172942,172979..172981,
173114..173116,173126..173128,173138..173146)
/locus_tag="SeAg_B0166"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133475"
gene 173215..174069
/locus_tag="SeAg_B0167"
/db_xref="GeneID:6796478"
CDS 173215..174069
/locus_tag="SeAg_B0167"
/note="involved in regulation of beta-lactamase; signaling
protein"
/codon_start=1
/transl_table=11
/product="regulatory protein AmpE"
/protein_id="YP_002145134.1"
/db_xref="GI:197248970"
/db_xref="GeneID:6796478"
/translation="MTLFTTLLVLIVERLFKLGEHWQLDHRLEALFRRITHFSMLRTM
GMTAIAMVVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRNE
PHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPV
TLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKAL
PAWFASLADLHTSQYQVLTRLAQFSLAREPHTDKVETPKAAVSMAKKASFVVVVIIAL
LTIYGALV"
misc_feature 173215..174066
/locus_tag="SeAg_B0167"
/note="regulatory protein AmpE; Provisional; Region:
PRK10987"
/db_xref="CDD:182884"
gene complement(174161..175111)
/locus_tag="SeAg_B0168"
/db_xref="GeneID:6792660"
CDS complement(174161..175111)
/locus_tag="SeAg_B0168"
/EC_number="3.2.1.55"
/note="identified by match to protein family HMM PF04616"
/codon_start=1
/transl_table=11
/product="alpha-N-arabinofuranosidase"
/protein_id="YP_002145135.1"
/db_xref="GI:197249747"
/db_xref="GeneID:6792660"
/translation="MANWPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRANSL
EGLRAADPVVVWRKPESGPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRM
FALECADADPLTGKWTEKGQIKTPFDTFALDATTFYHQGKQWYLWAQKAPDIAGNSNI
YLAELENPWTLKGEPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENY
CMGLLWINVNDDPRDPANWHKSPRPVFTTSYENRQYGPGHNSFTQTPEGEDVLVYHAR
NYTEIEGDPLYDPNRHTRLKRVRWDENGMPDFGVPPADTI"
misc_feature complement(174185..175075)
/locus_tag="SeAg_B0168"
/note="Glycosyl hydrolase family 43; Region: GH43_1;
cd08980"
/db_xref="CDD:185721"
misc_feature complement(order(174530..174532,174713..174715,
175070..175072))
/locus_tag="SeAg_B0168"
/note="active site"
/db_xref="CDD:185721"
gene complement(175111..176517)
/locus_tag="SeAg_B0170"
/db_xref="GeneID:6795691"
CDS complement(175111..176517)
/locus_tag="SeAg_B0170"
/note="identified by match to protein family HMM PF07690;
match to protein family HMM TIGR00792"
/codon_start=1
/transl_table=11
/product="Na+/galactoside symporter"
/protein_id="YP_002145136.1"
/db_xref="GI:197250232"
/db_xref="GeneID:6795691"
/translation="MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAP
ALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPD
WGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDM
KNDFKDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVV
GMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKATVMIVALYFLLNILH
QIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGY
DASAKAQSASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNY
RELSELQELKAAESVRKA"
misc_feature complement(175138..176517)
/locus_tag="SeAg_B0170"
/note="Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism]; Region: MelB;
COG2211"
/db_xref="CDD:32393"
misc_feature complement(175333..176343)
/locus_tag="SeAg_B0170"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(175390..175392,175399..175404,
175411..175416,175423..175428,175480..175482,
175489..175494,175504..175506,175513..175518,
175525..175527,175672..175674,175684..175686,
175693..175695,175705..175707,175717..175719,
175759..175764,175771..175776,175783..175785,
176041..176043,176059..176064,176071..176076,
176113..176115,176122..176127,176134..176139,
176146..176151,176320..176325,176329..176334))
/locus_tag="SeAg_B0170"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 176471..176596
/locus_tag="SeAg_B0169"
/db_xref="GeneID:6796199"
CDS 176471..176596
/locus_tag="SeAg_B0169"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145137.1"
/db_xref="GI:197249751"
/db_xref="GeneID:6796199"
/translation="MPYPIFSLTESLPLSIETSPHQMMAVIIRLRAFFCVAGSRR"
gene complement(176681..178051)
/locus_tag="SeAg_B0171"
/db_xref="GeneID:6795695"
CDS complement(176681..178051)
/locus_tag="SeAg_B0171"
/note="identified by match to protein family HMM PF00324"
/codon_start=1
/transl_table=11
/product="aromatic amino acid transporter"
/protein_id="YP_002145138.1"
/db_xref="GI:197248136"
/db_xref="GeneID:6795695"
/translation="MDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAG
PGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVLY
VLVAMAELTAVGKYIQFWYPEIPTWASAAAFFVIINAINLTNVKVFGEMEFWFAIIKV
IAVIAMILFGAWLLFSDTAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLEL
VGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPWTRVTADTSPFVLIFH
ELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLNVDKRGVPVS
SILVSAVVTALCVLLNYLAPESAFGLLMALVVSALVINWAMISLAHMMFRRAKQQQGV
KTRFPALFYPFGNVLCLLFMAAVLIIMLMTPGMAISVWLIPVWLLILGVGYLCKEKTA
KTVKAH"
misc_feature complement(176684..178051)
/locus_tag="SeAg_B0171"
/note="aromatic amino acid transporter; Provisional;
Region: PRK10238"
/db_xref="CDD:182324"
gene 178260..178382
/locus_tag="SeAg_B0172"
/db_xref="GeneID:6793076"
CDS 178260..178382
/locus_tag="SeAg_B0172"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145139.1"
/db_xref="GI:197248679"
/db_xref="GeneID:6793076"
/translation="MRKKKALVNTSFYFPLQMLICFYSLFMHKNAFNLLLNRFR"
gene 178617..179381
/gene="pdhR"
/locus_tag="SeAg_B0173"
/db_xref="GeneID:6795894"
CDS 178617..179381
/gene="pdhR"
/locus_tag="SeAg_B0173"
/EC_number="1.8.1.4"
/note="activates lctPRD operon; autoregulates itself
through repression of pdhR-aceEF-lpdA operon; regulates
pyruvate dehydrogenase complex"
/codon_start=1
/transl_table=11
/product="transcriptional regulator PdhR"
/protein_id="YP_002145140.1"
/db_xref="GI:197249231"
/db_xref="GeneID:6795894"
/translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDLLE
TRHALEGIAAYYAALRSTDEDKDRIRELHHAIELAQESGDLDAESEAVLQYQIAVTEA
AHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAR
EASHRHLAFIEEIMLDRSREESRRERALRRLEQRKN"
misc_feature 178617..179318
/gene="pdhR"
/locus_tag="SeAg_B0173"
/note="transcriptional regulator PdhR; Reviewed; Region:
pdhR; PRK09464"
/db_xref="CDD:181879"
misc_feature 178644..178838
/gene="pdhR"
/locus_tag="SeAg_B0173"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(178644..178646,178650..178652,178719..178721,
178725..178730,178752..178766,178770..178775,
178782..178784,178812..178817,178821..178832)
/gene="pdhR"
/locus_tag="SeAg_B0173"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 178911..179294
/gene="pdhR"
/locus_tag="SeAg_B0173"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:214892"
gene 179541..182204
/gene="aceE"
/locus_tag="SeAg_B0174"
/db_xref="GeneID:6795990"
CDS 179541..182204
/gene="aceE"
/locus_tag="SeAg_B0174"
/EC_number="1.2.4.1"
/note="E1 component; part of pyruvate dehydrogenase; forms
a complex with DlaT and LpdC"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit E1"
/protein_id="YP_002145141.1"
/db_xref="GI:197250339"
/db_xref="GeneID:6795990"
/translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEA
RKGGVKVAAGAGASNYINTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGIYARAFLEGRLTQ
EQMDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIV
NELEGIFAGAGWNVIKVMWGGRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKVYAALKKAQETKGKATVILAHTI
KGYGMGDTAEGKNIAHQVKKMNMDGVRYVRDRFNVPVADADLEKLPYITFPEGSEEHK
YLHERRQALHGYLPSRQPNFTEKLELPQLSDFGALLEEQSKEISTTIAFVRALNVMLK
NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
QEGINELGAGASWLAAATSYSTNDLPMIPFYIYYSMFGFQRIGDLCWQAGDQQARGFL
IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
QENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLETLEGSKGKVQLLGSGSILRHVR
EAAQILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
LAKRGEIDKKVVADAITKFNIDADKVNPRLA"
misc_feature 179541..182201
/gene="aceE"
/locus_tag="SeAg_B0174"
/note="pyruvate dehydrogenase subunit E1; Reviewed;
Region: aceE; PRK09405"
/db_xref="CDD:181825"
misc_feature 179766..180923
/gene="aceE"
/locus_tag="SeAg_B0174"
/note="Thiamine pyrophosphate (TPP) family, E1 of E. coli
PDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the Escherichia
coli pyruvate dehydrogenase multienzyme complex (PDC). PDC
catalyzes the oxidative...; Region: TPP_E1_EcPDC_like;
cd02017"
/db_xref="CDD:48180"
misc_feature order(179844..179852,180039..180050,180069..180074,
180078..180080,180084..180086,180111..180113,
180117..180125,180243..180254,180261..180263,
180270..180272,180282..180284,180330..180338,
180348..180350,180372..180374,180381..180386,
180393..180395)
/gene="aceE"
/locus_tag="SeAg_B0174"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48180"
misc_feature order(179868..179870,179961..179963,179967..179969,
180117..180119,180123..180125,180231..180239,
180246..180248,180321..180323,180327..180329,
180717..180719)
/gene="aceE"
/locus_tag="SeAg_B0174"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48180"
gene 182219..184108
/gene="aceF"
/locus_tag="SeAg_B0175"
/db_xref="GeneID:6795469"
CDS 182219..184108
/gene="aceF"
/locus_tag="SeAg_B0175"
/EC_number="2.3.1.12"
/note="E2 component of pyruvate dehydrogenase multienzyme
complex; in Escherichia coli AceF contains three
N-terminal lipoyl domains"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide acetyltransferase"
/protein_id="YP_002145142.1"
/db_xref="GI:197251001"
/db_xref="GeneID:6795469"
/translation="MAIEIKVPDIGTDEVEITEILVKVGDKVEAEQSLITVEGDKASM
EVPSPQAGVVKEIKVSVGDKTETGALIMIFDSADGAADAAPAKAEEKKEAAPAAAPAA
AAAKDVHVPDIGSDEVEVTEVMVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI
KVNTGDKVSTGSLIMVFEVAGAAPAAAPAKAEAAPAAAAPAAATGVKDVNVPDIGGDE
VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIM
VFEVEGAAPAAAPAKQEAAAPAPAAKAEKPAAPAAKAEGKSEFAENDAYVHATPLIRR
LAREFGVNLAKVKGTGRKGRILREDVQAYVKDAIKRAEAAPAATGGGIPGMLPWPKVD
FSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKR
KLDVKYTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVP
VFKDVNKKSVTELSRELTTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNA
PEVAILGVSKSAMEPVWNGKEFVPRLMMPISLSFDHRVIDGADGARFITIINNMLSDI
RRLVM"
misc_feature 182219..184105
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated; Region: aceF; PRK11854"
/db_xref="CDD:183337"
misc_feature 182225..182440
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(182309..182311,182330..182347,182357..182359)
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 182339..182341
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 182540..182749
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(182618..182620,182639..182656,182666..182668)
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 182648..182650
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 182837..183052
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(182921..182923,182942..182959,182969..182971)
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 182951..182953
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 183194..183304
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 183461..184105
/gene="aceF"
/locus_tag="SeAg_B0175"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene 184306..185733
/gene="lpdA"
/locus_tag="SeAg_B0176"
/db_xref="GeneID:6793569"
CDS 184306..185733
/gene="lpdA"
/locus_tag="SeAg_B0176"
/EC_number="1.8.1.4"
/note="E3 component of pyruvate and 2-oxoglutarate
dehydrogenase complex; catalyzes the oxidation of
dihydrolipoamide to lipoamide"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_002145143.1"
/db_xref="GI:197251626"
/db_xref="GeneID:6793569"
/translation="MMSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGG
VCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGL
AGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHED
PRVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKD
IVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVP
NGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAE
VIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASD
CADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLH
ESVGLAAEVFEGSITDLPNPKAKKK"
misc_feature 184315..185724
/gene="lpdA"
/locus_tag="SeAg_B0176"
/note="dihydrolipoamide dehydrogenase; Reviewed; Region:
PRK06467"
/db_xref="CDD:180579"
misc_feature 184339..>184443
/gene="lpdA"
/locus_tag="SeAg_B0176"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
misc_feature 184837..185076
/gene="lpdA"
/locus_tag="SeAg_B0176"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature 185347..185676
/gene="lpdA"
/locus_tag="SeAg_B0176"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene 185820..185939
/locus_tag="SeAg_B0177"
/db_xref="GeneID:6796356"
CDS 185820..185939
/locus_tag="SeAg_B0177"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145144.1"
/db_xref="GI:197248233"
/db_xref="GeneID:6796356"
/translation="MMAKDNETAKFIFSAAVRFSKLMPSVVPLSVIFDQLIVS"
gene 186022..186306
/locus_tag="SeAg_B0178"
/db_xref="GeneID:6796520"
CDS 186022..186306
/locus_tag="SeAg_B0178"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145145.1"
/db_xref="GI:197247645"
/db_xref="GeneID:6796520"
/translation="MKLFLTTAALTATLISGMAFASDPVIPWATNSGGTESTHIAAMG
EDLNAQHQQITHTHEGVWAANSGSIQADEAALTSNKPPVQGHPELMPHQG"
gene complement(186344..187135)
/locus_tag="SeAg_B0179"
/db_xref="GeneID:6794744"
CDS complement(186344..187135)
/locus_tag="SeAg_B0179"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145146.1"
/db_xref="GI:197248333"
/db_xref="GeneID:6794744"
/translation="MKKVMLSALLLSLPLLGYAQERFPSPEAAASAFAAAVAGKNETQ
LTALLGDDWRQFLPPEGADPEAVARFNRDWREGHRIVQKDNTAHLNVGREDWQLPVPM
VKETGGWRFDMAAAGNEILTRTIGRNELSTLQAMHAYVDAQQDYYLQNHRWAHRIISS
EGQKDGLYWPTKAGDVPSPLGPNFSPAAPDEGYHGYHFRIISDNDGHGAALLAWPMHY
GETGVMSFMVNQDDRIYQADLGKETESKVQAITRFAPDAQWQVAE"
misc_feature complement(186350..187078)
/locus_tag="SeAg_B0179"
/note="Protein of unknown function (DUF2950); Region:
DUF2950; pfam11453"
/db_xref="CDD:151892"
gene complement(187148..188770)
/locus_tag="SeAg_B0180"
/db_xref="GeneID:6794889"
CDS complement(187148..188770)
/locus_tag="SeAg_B0180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145147.1"
/db_xref="GI:197249020"
/db_xref="GeneID:6794889"
/translation="MTLPFKPHLIALVCSAGLFAASGVLYVKSRAPEAPAQAAAPAPE
PTQTAVPAPVAKTTFTTAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDN
PTLQGDAAIQAVASQPWDPSVKSLIAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDA
VQRLRLLAQQTGSLKSTPQQTVTSVPKSSASTAVTTTTTTSASTPATPSTVIKIEPAN
PQVVYVPNYNPATVYGAWPNTAYPPVYLPPPPGQQFADSFVKGFGYSLGVATTYALFS
SIDWDDDDHHHHDDDHHDDDYHHGGNGYQHNGDNININVNNFNRISGQNLPGQTMGWQ
HNPAWRNGVPYPNNTVAQRFHPTNVSGGLSTTQQAPVSRDSQRQAAMTQFQQRSHTSP
ANLSGETSRDRQRKAASQQLNQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRS
ELKAKAQQHPVSQQQRDTARQRIESSTPQQRQAFRQNMHANVFSGNDSRSPSWQSQQL
RGLESRRGSHLNTEQRAAAREHFSEHHEFHRR"
misc_feature complement(187940..188596)
/locus_tag="SeAg_B0180"
/note="Protein of unknown function (DUF3300); Region:
DUF3300; pfam11737"
/db_xref="CDD:152173"
gene 189159..191756
/gene="acnB"
/locus_tag="SeAg_B0181"
/db_xref="GeneID:6797314"
CDS 189159..191756
/gene="acnB"
/locus_tag="SeAg_B0181"
/EC_number="4.2.1.3"
/note="catalyzes the conversion of citrate to isocitrate
and the conversion of 2-methylaconitate to
2-methylisocitrate"
/codon_start=1
/transl_table=11
/product="bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase"
/protein_id="YP_002145148.1"
/db_xref="GI:197249635"
/db_xref="GeneID:6797314"
/translation="MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKTPPVGEEEF
LLDLLINRVPPGVDEAAYVKAGFLAAVAKGDTTSPLVSPEKAIELLGTMQGGYNIHPL
IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLSRP
PLAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIDPDQPGSVG
PIKQIEALQKKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRGGGLCLGG
KIAPIFFNTMEDAGALPVEVDVSRLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRA
CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
PVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIVEYLTSNI
VLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLADIKEPIL
CAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIGHFRAAGKLLDSHKGQLPTRLWVAPP
TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFDQLSQYTEKA
DGVIFQTAV"
misc_feature 189159..191696
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated; Region:
PRK09238"
/db_xref="CDD:181718"
misc_feature 189669..190091
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="Aconitase B swivel domain. Aconitate hydratase B is
involved in energy metabolism as part of the TCA cycle. It
catalyses the formation of cis-aconitate from citrate.
This is the aconitase swivel domain, which undergoes
swivelling conformational change in...; Region:
AcnB_Swivel; cd01576"
/db_xref="CDD:29525"
misc_feature 189888..189896
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29525"
misc_feature 190308..191618
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle;
Region: AcnB; cd01581"
/db_xref="CDD:153131"
misc_feature order(190398..190400,190407..190409,190647..190652,
191475..191477,191529..191531,191544..191546)
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153131"
misc_feature order(190653..190655,191286..191288,191463..191465,
191472..191477,191526..191528)
/gene="acnB"
/locus_tag="SeAg_B0181"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153131"
gene complement(191788..192759)
/locus_tag="SeAg_B0182"
/db_xref="GeneID:6792736"
CDS complement(191788..192759)
/locus_tag="SeAg_B0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145149.1"
/db_xref="GI:197250230"
/db_xref="GeneID:6792736"
/translation="MTYFKWLSVLLCFITSYHAYANDSAVGETNGSIEFLQQNEISMA
KERLLIASDRINVDYVFINHSAQDITVPVAFPMPAISQRYMGDRTEGIANFKISVDGK
PVKSESRWRVIHDLGGKGEEDITAKLLQTGWTIPQLRHVLNREGKASIEEGYKEGKQQ
LPSEWFDDGYLNIAVQQYFIWQQRFPAGKEIVIHHSYTPSESTGVPDSLDSLLGDEFG
DQCLTAATRKALKQLDAGIKYKNEDGSANIGWGYLGYILKTGANWKEGVIGDFTLRIH
KKDETEVVVPCFNYPLKQIDPLTLEFKQKNFKPDENMDIHFYYDSSR"
misc_feature complement(191824..192603)
/locus_tag="SeAg_B0182"
/note="Domain of unknown function (DUF4424); Region:
DUF4424; pfam14415"
/db_xref="CDD:206582"
gene 192832..193920
/locus_tag="SeAg_B0183"
/db_xref="GeneID:6796197"
CDS 192832..193920
/locus_tag="SeAg_B0183"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145150.1"
/db_xref="GI:197250781"
/db_xref="GeneID:6796197"
/translation="MRYYLFLLLIICQNTFAEEIKPLPQGDTWRKYIALSLRDEEGLE
DGLFNLRRIEANSSIAYVCGLIKDKNDNFLTDGQNQYHLYDRVMAIGYRWSWGSVVRF
DKTIASPQDVHCHYGKNVPLTSALLREQVAAQGRKNICQPVKASDPLRSDILNGLRAS
YIGDSNSLTLNGPLPTVKFIVEDLCATEDYAYFLGKATGDKTSFFIHDDANNRLRVVL
KKSPDGVWRPQPENNLLTQQSKVSSGYYSDGTLRETDLAQLAQACRVEGDTVNLTGTL
RQQGDGESAYWTLTPDSPLTCVRDANKQQPGWNQTMQLVLTPQERESLNNLVGKKVSV
GGDIFLALSASHHTPLLLDNIFRLTEIK"
gene 193945..194262
/locus_tag="SeAg_B0184"
/db_xref="GeneID:6792923"
CDS 193945..194262
/locus_tag="SeAg_B0184"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145151.1"
/db_xref="GI:197251596"
/db_xref="GeneID:6792923"
/translation="MLLMLCGNADAAAKLQYLHVTNGGMMAFYDDGNAKMCARCEPMV
QNLKSMNNKAPYARWKQMGDVIKLKSPNGESDYEFYQQGEILSTWWIFNYKTLHALVD
LSE"
gene complement(194277..195209)
/locus_tag="SeAg_B0185"
/db_xref="GeneID:6796324"
CDS complement(194277..195209)
/locus_tag="SeAg_B0185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145152.1"
/db_xref="GI:197250897"
/db_xref="GeneID:6796324"
/translation="MKKIAFGFPLLLAVLPYPAQANEAVANSSLHLLAQSDIQLAKER
LLIERERINADYLFVNPTAQDITVPVVFPMPPLSFSDVDEAGEDYIPGIRNIKIRVDG
QIVTPQPRWTVVLNAPQEEITDKLQQAGWTVEQLIAALSDGEFSPPADLPALPPEWFK
DNQPQFTIQRNFIWQQTFPAGKAVTIHQVYTPSVSLSALMSTDELDNNNTCPTAENRQ
QIQQALDQLMTKQGPAGALGQNRMDVVLTGDPAWKEGDIGEFTLRLHGDAITTCFQPP
LTRINATTLEFKQKNFRPAENLAVTFYSLSSMYE"
misc_feature complement(194319..195062)
/locus_tag="SeAg_B0185"
/note="Domain of unknown function (DUF4424); Region:
DUF4424; pfam14415"
/db_xref="CDD:206582"
gene 195284..196417
/locus_tag="SeAg_B0186"
/db_xref="GeneID:6795802"
CDS 195284..196417
/locus_tag="SeAg_B0186"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145153.1"
/db_xref="GI:197251601"
/db_xref="GeneID:6795802"
/translation="MRYFLLVLMMICCNLYASDMFPLKPDENPRGAIALTLREEVGLL
NARFDIKRIEINETRELAYFCGLLKDTDGQYIKDEDDKYYLFDRILLDSGTEGWVSTV
YLDEEFSAPEQAKCHFAGNVDLKSQELCALVKQYGRIAACLPVEKGDPLRTQLLDAVR
ENYVGDLNRKTTLNNTPVPSFVVTQLCAAQKYAYFCGEPANADADWYSQDSKKLDVVL
QKDANNTWWLPVPQFQGISRQSSLAWCNHSTDILPVKTVEEMAKKRQQRCVREGDTVS
LRGILAEQKSGAQRYWVVKLEEPLTCVQDADMRTADWNGQVQLLLSDEIIERVKVQYG
DDLLNQEIVVTGDVLLALSSDHHTPLVLENIVELMPVMEGPGW"
gene 196419..196598
/locus_tag="SeAg_B0187"
/db_xref="GeneID:6796329"
CDS 196419..196598
/locus_tag="SeAg_B0187"
/codon_start=1
/transl_table=11
/product="aconitate hydratase"
/protein_id="YP_002145154.1"
/db_xref="GI:197250964"
/db_xref="GeneID:6796329"
/translation="MRLPIFNDCVIPAHNKRSSTDRFPASAELAAVDTYRYLNFDQLS
QYTEKADGVIFQTAV"
misc_feature <196470..196577
/locus_tag="SeAg_B0187"
/note="aconitate hydratase 2; Provisional; Region:
PLN00094"
/db_xref="CDD:177714"
gene complement(196638..197102)
/locus_tag="SeAg_B0188"
/db_xref="GeneID:6794099"
CDS complement(196638..197102)
/locus_tag="SeAg_B0188"
/note="might be involved in hypersensitivity to
nitrofurzone"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145155.1"
/db_xref="GI:197248316"
/db_xref="GeneID:6794099"
/translation="MSVFRRIIYHSGWFILFGPLIGAAIAIGIINFLPAIIGGPDSFL
FYFCRTIPELVIITGWIYSLLPAWLTGVACALIPLKLYQKIINRMILCAIAGGLITTL
FNFARYGFDISILPLIYGEVLIMLIPAIVAGAIMGGVITYLPGLREVKRNNK"
misc_feature complement(196641..197102)
/locus_tag="SeAg_B0188"
/note="putative inner membrane protein; Provisional;
Region: PRK09823"
/db_xref="CDD:170114"
gene complement(197512..197835)
/locus_tag="SeAg_B0189"
/db_xref="GeneID:6794872"
CDS complement(197512..197835)
/locus_tag="SeAg_B0189"
/codon_start=1
/transl_table=11
/product="low molecular weight phosphotyrosine protein
phosphatase"
/protein_id="YP_002145156.1"
/db_xref="GI:197247695"
/db_xref="GeneID:6794872"
/translation="MNVLFICSRNQWRSPTAEQVFRRYPGLSVRSAGTSRNAKKSVSC
GLLQWADVICVMEQKHKDRLMAEYRRIIENKPLHVLDIPDDYRYMDPELVRQLEELVP
EVLGI"
misc_feature complement(197518..197835)
/locus_tag="SeAg_B0189"
/note="Low molecular weight phosphatase family; Region:
LMWPc; cl00105"
/db_xref="CDD:241614"
misc_feature complement(197524..197835)
/locus_tag="SeAg_B0189"
/note="Protein-tyrosine-phosphatase [Signal transduction
mechanisms]; Region: Wzb; COG0394"
/db_xref="CDD:223471"
misc_feature complement(order(197794..197802,197806..197811,
197815..197817))
/locus_tag="SeAg_B0189"
/note="active site"
/db_xref="CDD:238063"
gene complement(197807..197923)
/locus_tag="SeAg_B0190"
/db_xref="GeneID:6797094"
CDS complement(197807..197923)
/locus_tag="SeAg_B0190"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145157.1"
/db_xref="GI:197249653"
/db_xref="GeneID:6797094"
/translation="MLRAAPWGIESPRLTNSPLAKRDLEEYLFNECAFHMQP"
gene 198106..198468
/locus_tag="SeAg_B0191"
/db_xref="GeneID:6792753"
CDS 198106..198468
/locus_tag="SeAg_B0191"
/note="identified by match to protein family HMM PF06062"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145158.1"
/db_xref="GI:197248881"
/db_xref="GeneID:6792753"
/translation="MDYEFLRDVTGGVKVRMSMGHEVVGHWFNEEVKDNLSLLDEVEQ
AARTVKGSERSWQRAGHEYTIWMDGEEVMIRANQLDFSGDEMEEGMSYYDEESLSLCG
MEDFLRVVAAYREFVSKA"
misc_feature 198106..198462
/locus_tag="SeAg_B0191"
/note="hypothetical protein; Provisional; Region:
PRK05248"
/db_xref="CDD:235372"
gene 198511..198624
/locus_tag="SeAg_B0192"
/db_xref="GeneID:6795035"
CDS 198511..198624
/locus_tag="SeAg_B0192"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145159.1"
/db_xref="GI:197250755"
/db_xref="GeneID:6795035"
/translation="MGAVVETKSPHIPAGSIPAFLLQNDFLIFINHFKTVI"
gene 198703..199656
/locus_tag="SeAg_B0193"
/db_xref="GeneID:6792896"
CDS 198703..199656
/locus_tag="SeAg_B0193"
/note="transports degraded pectin products into the
bacterial cell"
/codon_start=1
/transl_table=11
/product="2-keto-3-deoxygluconate permease"
/protein_id="YP_002145160.1"
/db_xref="GI:197249954"
/db_xref="GeneID:6792896"
/translation="MNIKKAIERVPGGMMVVPLVIGAVINTFAPQALEIGGFTTALFK
NGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIF
GLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN
IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGG
LAGILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAE
VAAAAAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA"
misc_feature 198703..199629
/locus_tag="SeAg_B0193"
/note="2-keto-3-deoxygluconate permease; Provisional;
Region: PRK12460"
/db_xref="CDD:183538"
gene 199653..200924
/locus_tag="SeAg_B0194"
/db_xref="GeneID:6796895"
CDS 199653..200924
/locus_tag="SeAg_B0194"
/note="identified by match to protein family HMM PF07005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145161.1"
/db_xref="GI:197250274"
/db_xref="GeneID:6796895"
/translation="MKMMVIADDFTGSNDTGVQLAKKGARTEVMLSASQKPSRRADVL
VINTESRAMPADQAASAVYAALSPWCETSPAPLVYKKIDSTFRGNIGAEVTAAMRASQ
RKLAVIAAAIPAAGRTTLEGKCLVNGVPLLETEFASDPKTPIVSSRIAEIVALQSEIP
VYEVFLQDVRRGGLSALLTAYAAEGEGIIVVDAVEERDLTLIAQAACEQPSMPLLVGA
AGLANALPVELFMQDRQRLPVLVVAGSMSEATRRQVDNALCRGRAEVVDIDAARMVSD
SAEQEIASVVEQACALLSQHRHTILRTSRRAEDRQLIDALCEKFAMSRQQLGERLSQR
LGVVTLNIIEQARIGGLFLTGGDIATAVAGALGAEGYRIQSEVAPCIPCGTFVNSEID
DLPVITKAGGFGSDSTLCDALYYIEEMYCGD"
misc_feature 199653..200903
/locus_tag="SeAg_B0194"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3395"
/db_xref="CDD:33202"
gene 200914..201897
/gene="pdxA"
/locus_tag="SeAg_B0195"
/db_xref="GeneID:6795403"
CDS 200914..201897
/gene="pdxA"
/locus_tag="SeAg_B0195"
/EC_number="1.1.1.262"
/note="catalyzes oxidation of
4-(phosphohydroxy)-L-threonine into
2-amino-3-oxo-4-(phosphohydroxy)butyric acid which
decarboxylates to form
1-amino-3-(phosphohydroxy)propan-2-one
(3-amino-2-oxopropyl phosphate)"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="YP_002145162.1"
/db_xref="GI:197249801"
/db_xref="GeneID:6795403"
/translation="METKTVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATL
KRLQAKGITPNVELRAIERVAEARFAPGTIHVIDEPLAQPEALEAGKVQAQAGDLAYR
CVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAMVLYTDK
LKVIHVSTHIALRKFLDTLSTTRVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENG
LFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLK
LLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA"
misc_feature 200914..201894
/gene="pdxA"
/locus_tag="SeAg_B0195"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
misc_feature 200917..201894
/gene="pdxA"
/locus_tag="SeAg_B0195"
/note="4-hydroxythreonine-4-phosphate dehydrogenase 2;
Provisional; Region: pdxA; PRK03371"
/db_xref="CDD:179572"
gene 201907..202674
/locus_tag="SeAg_B0196"
/db_xref="GeneID:6792992"
CDS 201907..202674
/locus_tag="SeAg_B0196"
/note="identified by match to protein family HMM PF00455;
match to protein family HMM PF08220"
/codon_start=1
/transl_table=11
/product="DeoR-family transcriptional regulator"
/protein_id="YP_002145163.1"
/db_xref="GI:197251561"
/db_xref="GeneID:6792992"
/translation="MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLD
EQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGT
TMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL
RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFN
VVPLERFNDVITDVNLPPSAQVELKGRAFALTLVQPE"
misc_feature 201907..202635
/locus_tag="SeAg_B0196"
/note="Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism];
Region: GlpR; COG1349"
/db_xref="CDD:224268"
misc_feature 201922..202080
/locus_tag="SeAg_B0196"
/note="helix_turn_helix, Deoxyribose operon repressor;
Region: HTH_DEOR; smart00420"
/db_xref="CDD:197714"
misc_feature 202132..202599
/locus_tag="SeAg_B0196"
/note="DeoR C terminal sensor domain; Region: DeoRC;
pfam00455"
/db_xref="CDD:201239"
gene complement(202704..203498)
/gene="speD"
/locus_tag="SeAg_B0197"
/db_xref="GeneID:6796774"
CDS complement(202704..203498)
/gene="speD"
/locus_tag="SeAg_B0197"
/EC_number="4.1.1.50"
/note="S-adenosylmethionine provides the aminopropyl
moiety required for spermidine biosynthesis from
putrescine"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine decarboxylase"
/protein_id="YP_002145164.1"
/db_xref="GI:197251032"
/db_xref="GeneID:6796774"
/translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPIDPKLIDQTEHPGPLP
ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
VTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSEDMKSLYDMVDVNVYQENIFHTKML
LKEFDLKHYMFHTKPEDLTETERQEITAALWKEMREIYYGRNISAV"
misc_feature complement(202707..203498)
/gene="speD"
/locus_tag="SeAg_B0197"
/note="S-adenosylmethionine decarboxylase; Provisional;
Region: PRK05462"
/db_xref="CDD:180099"
gene complement(203519..204379)
/gene="speE"
/locus_tag="SeAg_B0198"
/db_xref="GeneID:6793601"
CDS complement(203519..204379)
/gene="speE"
/locus_tag="SeAg_B0198"
/EC_number="2.5.1.16"
/note="catalyzes the formation of spermidine from
putrescine and S-adenosylmethioninamine"
/codon_start=1
/transl_table=11
/product="spermidine synthase"
/protein_id="YP_002145165.1"
/db_xref="GI:197247727"
/db_xref="GeneID:6793601"
/translation="MAENTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
TITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCT
DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEALDSHRKLSHYFSDVGF
YQAAIPTYYGGIMTFAWATDNDALRHLSSEIIQARFHAAGLKCRYYNPAIHAAAFALP
QYLHDALSAQ"
misc_feature complement(203528..204370)
/gene="speE"
/locus_tag="SeAg_B0198"
/note="spermidine synthase; Provisional; Region: PRK00811"
/db_xref="CDD:234843"
misc_feature complement(203807..204139)
/gene="speE"
/locus_tag="SeAg_B0198"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(203906..203908,203957..203965,
204053..204058,204110..204130))
/gene="speE"
/locus_tag="SeAg_B0198"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(204486..204812)
/locus_tag="SeAg_B0199"
/db_xref="GeneID:6797127"
CDS complement(204486..204812)
/locus_tag="SeAg_B0199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145166.1"
/db_xref="GI:197249269"
/db_xref="GeneID:6797127"
/translation="MLFGSLMALCANSYALTESEAEDMADLTAVFVFLKNDCGYQNLP
NSQIRRALVFFAQQNQWDLSNYDTFDMKSLGEDSYRDLSGIGIPVAKKCKALARDSLS
LLAYVK"
misc_feature complement(204519..>204749)
/locus_tag="SeAg_B0199"
/note="Bacterial chaperone lipoprotein (PulS_OutS);
Region: PulS_OutS; cl09898"
/db_xref="CDD:164166"
gene 205035..206645
/locus_tag="SeAg_B0200"
/db_xref="GeneID:6795270"
CDS 205035..206645
/locus_tag="SeAg_B0200"
/note="laccase; copper-stimulated phenoloxidase and
ferroxidase which may be involved in copper
detoxification"
/codon_start=1
/transl_table=11
/product="multicopper oxidase"
/protein_id="YP_002145167.1"
/db_xref="GI:197249042"
/db_xref="GeneID:6795270"
/translation="MLRRDFLKYSVALGVASALPLWSRAAFAAERPALPIPDLLTADA
SNRMQLIVKAGQSTFAGKNATTWGYNGNLLGPAVQLHKGKSVTVDIHNQLAEDTTLHW
HGLEIPGIVDGGPQGIIPAGGTRTVTFTPQQRAATCWIHPHKHGKTGRQVAMGLAGLV
LIEDDEIRKLRLPKQWGIDDVPVIIQDKRFSADGQIDYQLDIMTAAVGWFGDTLLTNG
AIYPQHSAPKGWLRLRLLNGCNARSLNIAASDNRPLYVIASDGGLLAEPVKVTELPLL
MGERFEVLVDISDGKAFDLVTLPVSQMGMAIAPFDKPHPVMRIQPLRITASGTLPDTL
TTMPALPSLEGLTVRNLKLSMDPRLDMMGMQMLMKKYGAQAMSGMDHDSMNAHMQGGN
MGHGEMDHGNMDHSGMNHGAMGNMNHGGKFDFHNANFINGQVFDMNKPMFAAQKGRHE
RWVISGVGDMMLHPFHIHGTQFRILSENGKAPAAHRTGWKDTVRVEGGISEVLVKFDH
DAPKEHAYMAHCHLLEHEDTGMMLGFTV"
misc_feature 205035..206642
/locus_tag="SeAg_B0200"
/note="multicopper oxidase; Provisional; Region: PRK10965"
/db_xref="CDD:182870"
misc_feature 205188..205532
/locus_tag="SeAg_B0200"
/note="Multicopper oxidase; Region: Cu-oxidase_3;
pfam07732"
/db_xref="CDD:203745"
misc_feature 206298..206642
/locus_tag="SeAg_B0200"
/note="Multicopper oxidase; Region: Cu-oxidase_2;
pfam07731"
/db_xref="CDD:203744"
gene complement(206723..209113)
/gene="gcd"
/locus_tag="SeAg_B0201"
/db_xref="GeneID:6797337"
CDS complement(206723..209113)
/gene="gcd"
/locus_tag="SeAg_B0201"
/EC_number="1.1.5.2"
/note="identified by match to protein family HMM PF01011;
match to protein family HMM TIGR03074"
/codon_start=1
/transl_table=11
/product="quinoprotein glucose dehydrogenase"
/protein_id="YP_002145168.2"
/db_xref="GI:449785015"
/db_xref="GeneID:6797337"
/translation="MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYP
IAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGI
WLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS
SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEV
TPIKVGDTLYLCTAHQRLFALDAASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKAD
TASSEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLNLQTNMPDTTPGLYE
PTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNTGKLLWAFDPGAKDPNAIPAD
EHAFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
GKLAWSYQTVHHDLWDMDLPAQPTLADITVDGTTVPVIYAPAKTGNIFVLDRRNGELV
VPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCRVMFHQL
RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGN
PMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEI
VWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
GEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK"
misc_feature complement(206738..209017)
/gene="gcd"
/locus_tag="SeAg_B0201"
/note="membrane-bound PQQ-dependent dehydrogenase,
glucose/quinate/shikimate family; Region: PQQ_membr_DH;
TIGR03074"
/db_xref="CDD:200239"
misc_feature complement(206741..208612)
/gene="gcd"
/locus_tag="SeAg_B0201"
/note="Membrane-bound PQQ-dependent glucose dehydrogenase;
Region: PQQ_mGDH; cd10280"
/db_xref="CDD:199838"
misc_feature complement(order(206744..206746,206750..206752,
206879..206881,206888..206896,206903..206905,
206909..206911,207062..207064,207071..207079,
207086..207088,207092..207094,207587..207589,
207596..207604,207611..207613,207617..207619,
207749..207751,207758..207766,207773..207775,
207779..207781,207983..207985,207992..208000,
208007..208009,208013..208015,208181..208183,
208190..208198,208205..208207,208211..208213,
208370..208372,208379..208387,208394..208396,
208400..208402,208520..208522,208529..208537))
/gene="gcd"
/locus_tag="SeAg_B0201"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199838"
misc_feature complement(order(206978..206980,207635..207637,
207902..207904,208058..208063,208106..208108,
208316..208318,208331..208336,208463..208465))
/gene="gcd"
/locus_tag="SeAg_B0201"
/note="putative active site [active]"
/db_xref="CDD:199838"
gene 209319..209855
/gene="hpt"
/locus_tag="SeAg_B0202"
/db_xref="GeneID:6795820"
CDS 209319..209855
/gene="hpt"
/locus_tag="SeAg_B0202"
/EC_number="2.4.2.8"
/note="identified by match to protein family HMM PF00156;
match to protein family HMM TIGR01203"
/codon_start=1
/transl_table=11
/product="hypoxanthine phosphoribosyltransferase"
/protein_id="YP_002145169.1"
/db_xref="GI:197250856"
/db_xref="GeneID:6795820"
/translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRG
SFMFMADLCREVQVPHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
DSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIPDEFVVGYGIDY
AQRYRHLPYVGKVVLLDE"
misc_feature 209379..209726
/gene="hpt"
/locus_tag="SeAg_B0202"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(209442..209444,209448..209450,209613..209621,
209625..209639,209709..209711)
/gene="hpt"
/locus_tag="SeAg_B0202"
/note="active site"
/db_xref="CDD:206754"
gene complement(209913..210575)
/locus_tag="SeAg_B0203"
/db_xref="GeneID:6795759"
CDS complement(209913..210575)
/locus_tag="SeAg_B0203"
/note="catalyzes the interconversion of bicarbonate and
carbon dioxide"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="YP_002145170.1"
/db_xref="GI:197251379"
/db_xref="GeneID:6795759"
/translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD
SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHSGCG
GIKAAVENPELGLINNWLLHIRDIWLKHSSLLGKMPEEQRLDALYELNVMEQVYNLGH
STIMQSAWKRGQNVTIHGWAYSINDGLLRDLDVTATNRETLENGYHKGISALSLKYIP
HQ"
misc_feature complement(210003..210545)
/locus_tag="SeAg_B0203"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeA; cd00883"
/db_xref="CDD:238448"
misc_feature complement(order(210033..210035,210273..210275,
210282..210284,210312..210314,210327..210329,
210393..210395,210402..210404,210438..210446,
210450..210452,210471..210473,210477..210479))
/locus_tag="SeAg_B0203"
/note="active site clefts [active]"
/db_xref="CDD:238448"
misc_feature complement(order(210273..210275,210282..210284,
210444..210446,210450..210452))
/locus_tag="SeAg_B0203"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:238448"
misc_feature complement(order(210012..210014,210018..210020,
210024..210029,210033..210035,210219..210221,
210327..210332,210339..210344,210384..210386,
210390..210392,210396..210404,210417..210419,
210423..210428,210432..210434,210438..210449))
/locus_tag="SeAg_B0203"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238448"
gene 210684..211610
/locus_tag="SeAg_B0204"
/db_xref="GeneID:6794666"
CDS 210684..211610
/locus_tag="SeAg_B0204"
/note="identified by match to protein family HMM PF00005"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_002145171.1"
/db_xref="GI:197251732"
/db_xref="GeneID:6794666"
/translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK
STTIGIISSLVNKTSGRVNVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
AGYYGVEHKEAVLRSEKYLKQLDLWEKRSERARMLSGGMKRRLMIARALMHEPKLLIL
DEPTAGVDIELRRSMWGFLKDLNAKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
SMKNLLSKLKSETFILDLAPKSPLPKLTGYQYRLVDTSTLEVEVLREQGVNSVFSQLS
EQGVQVLSMRNKANRLEELFVSLVHEKQGDRA"
misc_feature 210684..211589
/locus_tag="SeAg_B0204"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature 210696..211325
/locus_tag="SeAg_B0204"
/note="ATP-binding cassette domain of the drug resistance
transporter and related proteins, subfamily A; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:213197"
misc_feature 210795..210818
/locus_tag="SeAg_B0204"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213197"
misc_feature order(210804..210809,210813..210821,210936..210938,
211164..211169,211263..211265)
/locus_tag="SeAg_B0204"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213197"
misc_feature 210927..210938
/locus_tag="SeAg_B0204"
/note="Q-loop/lid; other site"
/db_xref="CDD:213197"
misc_feature 211092..211121
/locus_tag="SeAg_B0204"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213197"
misc_feature 211152..211169
/locus_tag="SeAg_B0204"
/note="Walker B; other site"
/db_xref="CDD:213197"
misc_feature 211176..211187
/locus_tag="SeAg_B0204"
/note="D-loop; other site"
/db_xref="CDD:213197"
misc_feature 211251..211271
/locus_tag="SeAg_B0204"
/note="H-loop/switch region; other site"
/db_xref="CDD:213197"
gene 211607..212377
/locus_tag="SeAg_B0205"
/db_xref="GeneID:6795551"
CDS 211607..212377
/locus_tag="SeAg_B0205"
/note="identified by match to protein family HMM PF01061"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002145172.1"
/db_xref="GI:197250507"
/db_xref="GeneID:6795551"
/translation="MMQLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
LIGSRIGEMHGFSYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPT
HVIIAGFVGGGVARGLCVGILVTAISLFFVPFQVHSWVFVALTLILTAILFSLAGLLN
AVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
LGIHDVPLVTTFGVLVIFIAAFYLLCWSLIQRGRGLRS"
misc_feature 211607..212374
/locus_tag="SeAg_B0205"
/note="inner membrane transport permease; Provisional;
Region: PRK15066"
/db_xref="CDD:185026"
gene complement(212486..213562)
/locus_tag="SeAg_B0206"
/db_xref="GeneID:6796719"
CDS complement(212486..213562)
/locus_tag="SeAg_B0206"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbriae"
/protein_id="YP_002145173.1"
/db_xref="GI:197248848"
/db_xref="GeneID:6796719"
/translation="MKNLWMLLALALFSGHALAEGTMGNGSGWCQPTNGTHNFPFSFN
QTITDTDGNQTGTIVEEHWSAGGEYSAKCDCDNSDYRGYNYFTATTGDLTQKGTHSET
RYYGHMDYYVLVAGKLEIGTEAYVAGKLNQNIPVPFSSISNEDSSAGGCGDAEMKSMT
AGNKGTVRIYITHPLVGEISIPQTTIMNLYLSKMPGSSGDNIPPAVPPVAHVTMSGTI
TVPQSCSINAGQVIEVRLPDIEGKDIRNLGDSPQNSHVTTQVNFTCSNVADGTNLSMS
LNGETDPHNPEYLKTDNENLGIRISDKYDKTIVPGGSAELPIEDYTDGKGSTEFTAAP
VNTTGHVPHTGEYQATATLEIQIR"
misc_feature complement(212489..213562)
/locus_tag="SeAg_B0206"
/note="putative fimbrial protein StiH; Provisional;
Region: PRK15297"
/db_xref="CDD:185197"
gene complement(213571..216117)
/locus_tag="SeAg_B0207"
/db_xref="GeneID:6795002"
CDS complement(213571..216117)
/locus_tag="SeAg_B0207"
/note="identified by match to protein family HMM PF00577"
/codon_start=1
/transl_table=11
/product="outer membrane usher protein FimD"
/protein_id="YP_002145174.1"
/db_xref="GI:197249470"
/db_xref="GeneID:6795002"
/translation="MRKRQHRVFYLSRCAVCIALGSTFAHVAWARDYFNPAFIENHGQ
ASRTSVDLSTFDNDKSQLPGTYYVTININKTEIGARNVDFQLTTLSDGQQALQGCLRL
QELKDNSVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQTLSVSIPQLYIANNARGY
VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNW
SSNNGESGSWNSVYNYLQRDIIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQP
NSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVK
EADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLLYGLPWGI
TLYGGSQIAGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWRVRYSK
GVVSTGTTFSLAGYRYASENYNSLSEVINPDDDFYDNYGKRHNRFEASVNQQISDTLG
SLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYSLSYSYNKNTYQYRSDNDDDDNDD
DRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWS
LQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQ
PITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVD
IPLNNQTVYPTRNAVVRASYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASI
VGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ"
misc_feature complement(213574..216117)
/locus_tag="SeAg_B0207"
/note="fimbrial outer membrane usher protein StiC;
Provisional; Region: PRK15298"
/db_xref="CDD:185198"
misc_feature complement(215572..216021)
/locus_tag="SeAg_B0207"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature complement(213838..215526)
/locus_tag="SeAg_B0207"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature complement(213610..213810)
/locus_tag="SeAg_B0207"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene complement(216144..216827)
/locus_tag="SeAg_B0208"
/db_xref="GeneID:6793382"
CDS complement(216144..216827)
/locus_tag="SeAg_B0208"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="chaperone protein FimC"
/protein_id="YP_002145175.1"
/db_xref="GI:197247820"
/db_xref="GeneID:6793382"
/translation="MNSLAKAGLLCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISI
SNNDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGNLPEDR
ESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGR
TLTVKNPTPYYMNFATLSVGSQKVKAPRYVAPFGNAQYTLPAAASGPIVWSIINDFGG
IGPEHKQTP"
misc_feature complement(216147..216758)
/locus_tag="SeAg_B0208"
/note="fimbrial chaperone protein StiB; Provisional;
Region: PRK15299"
/db_xref="CDD:185199"
misc_feature complement(216402..216758)
/locus_tag="SeAg_B0208"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(216162..216344)
/locus_tag="SeAg_B0208"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(216875..217408)
/locus_tag="SeAg_B0209"
/db_xref="GeneID:6794763"
CDS complement(216875..217408)
/locus_tag="SeAg_B0209"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145176.1"
/db_xref="GI:197248018"
/db_xref="GeneID:6794763"
/translation="MKLTLKTLTVALAAITLSPAALADTAKDGTVHITGLIKQNACTV
KTDSVEVTLQDEFASLFTAAGQTAGDKDFTIELENCDANVYSSVQARFEGTLDGTDAT
ILKNEDDAENIGVQILDKSSTPMTFNDLQAWSAAVALTEGVTELSMPFTARYISTAVP
VKSGTVDATATFYLQYN"
misc_feature complement(216878..217357)
/locus_tag="SeAg_B0209"
/note="fimbrial protein StiA; Provisional; Region:
PRK15300"
/db_xref="CDD:185200"
gene complement(217422..217550)
/locus_tag="SeAg_B0210"
/db_xref="GeneID:6797268"
CDS complement(217422..217550)
/locus_tag="SeAg_B0210"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145177.1"
/db_xref="GI:197248141"
/db_xref="GeneID:6797268"
/translation="MYSEFFFAPQKSSDIIFTHSAIKRTITSHTIDIVTMSIFIIS"
gene complement(217577..217747)
/locus_tag="SeAg_B0211"
/db_xref="GeneID:6793081"
CDS complement(217577..217747)
/locus_tag="SeAg_B0211"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145178.1"
/db_xref="GI:197249142"
/db_xref="GeneID:6793081"
/translation="MMSACFFGRQYTMTTIIFYSKKFALFLKLLTAFIESGPLKGNHG
DSIKQTLTKIID"
gene 217778..218218
/locus_tag="SeAg_B0212"
/db_xref="GeneID:6794273"
CDS 217778..218218
/locus_tag="SeAg_B0212"
/note="identified by match to protein family HMM PF03610"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIA"
/protein_id="YP_002145179.1"
/db_xref="GI:197251223"
/db_xref="GeneID:6794273"
/translation="MLGWVISCHDDRAQEMLEGLEKKYGPLAQCRAVNFWRGLSVNML
SRMMCDALHATDSGEGVIFLTDISGAAPYRVASLMSHKHSQCEVISGVSYSLMEEMIP
WRESMSSSAFRDQIVALGAPDVTSLWHQQQKNPPFVLLHDSYEF"
misc_feature 217781..218137
/locus_tag="SeAg_B0212"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(217802..217804,217844..217849,217880..217882,
217988..217990,218081..218083)
/locus_tag="SeAg_B0212"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(217802..217804,217973..217975,217988..217990)
/locus_tag="SeAg_B0212"
/note="active site"
/db_xref="CDD:28890"
misc_feature 217802..217804
/locus_tag="SeAg_B0212"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 218286..219509
/locus_tag="SeAg_B0213"
/db_xref="GeneID:6793550"
CDS 218286..219509
/locus_tag="SeAg_B0213"
/note="identified by match to protein family HMM PF01522"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_002145180.1"
/db_xref="GI:197248288"
/db_xref="GeneID:6793550"
/translation="MRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVG
NIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHLESVQGKQKVEDGLGDLNKPLSNQN
LVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLQGRLHQTWYQIRIGDRLAYVSAM
DAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLE
DYIHNRANFPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIISSRIKRHPQTWNP
RSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRSYHNILFDFERSRRALA
QFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTD
SLETMSRLISNQPQG"
misc_feature 218967..219476
/locus_tag="SeAg_B0213"
/note="Putative catalytic polysaccharide deacetylase
domain of uncharacterized protein yadE and similar
proteins; Region: CE4_yadE_5s; cd10966"
/db_xref="CDD:213024"
misc_feature order(218994..218999,219180..219182,219195..219197,
219321..219329)
/locus_tag="SeAg_B0213"
/note="putative active site [active]"
/db_xref="CDD:213024"
misc_feature order(218997..218999,219180..219182,219195..219197)
/locus_tag="SeAg_B0213"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:213024"
gene complement(219516..219896)
/gene="panD"
/locus_tag="SeAg_B0214"
/db_xref="GeneID:6794844"
CDS complement(219516..219896)
/gene="panD"
/locus_tag="SeAg_B0214"
/EC_number="4.1.1.11"
/note="Converts L-aspartate to beta-alanine and provides
the major route of beta-alanine production in bacteria.
Beta-alanine is essential for the biosynthesis of
pantothenate (vitamin B5)"
/codon_start=1
/transl_table=11
/product="aspartate alpha-decarboxylase"
/protein_id="YP_002145181.1"
/db_xref="GI:197250616"
/db_xref="GeneID:6794844"
/translation="MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLDASGILENEAI
DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCAEVGDIVIIASFVTMSDEEARTWR
PKVAYFEGDNEMKRTAKAIPVQVA"
misc_feature complement(219561..219890)
/gene="panD"
/locus_tag="SeAg_B0214"
/note="Aspartate alpha-decarboxylase or L-aspartate
1-decarboxylase, a pyruvoyl group-dependent decarboxylase
in beta-alanine production; Region: Asp_decarbox; cd06919"
/db_xref="CDD:132994"
misc_feature complement(order(219594..219596,219621..219629,
219639..219641,219663..219668,219672..219677,
219723..219737,219741..219743,219750..219752,
219756..219758,219768..219773,219780..219782,
219786..219788,219828..219839,219861..219866,
219870..219872,219876..219890))
/gene="panD"
/locus_tag="SeAg_B0214"
/note="tetramerization interface [polypeptide binding];
other site"
/db_xref="CDD:132994"
misc_feature complement(order(219723..219725,219822..219827,
219864..219866,219870..219872))
/gene="panD"
/locus_tag="SeAg_B0214"
/note="active site"
/db_xref="CDD:132994"
gene complement(219991..220845)
/gene="panC"
/locus_tag="SeAg_B0215"
/db_xref="GeneID:6793989"
CDS complement(219991..220845)
/gene="panC"
/locus_tag="SeAg_B0215"
/EC_number="6.3.2.1"
/note="catalyzes the formation of (R)-pantothenate from
pantoate and beta-alanine"
/codon_start=1
/transl_table=11
/product="pantoate--beta-alanine ligase"
/protein_id="YP_002145182.1"
/db_xref="GI:197249991"
/db_xref="GeneID:6793989"
/translation="MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEA
KARADVVIVSIFVNPMQFDRPDDLVRYPRTLQEDCEKLNKRKVDYVFAPAVEEIYPQG
LEGQTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLIQPDIACFGEKDFQQLALIR
KMVADMSYDIEIVGVPIIRAKDGLALSSRNGYLTAEQRKIAPGLHNVMNSIAEKLIAG
NRELQEIIAIAEQELNEKGFRADDIQIRDADTLQELTETSKRAVILAAAWLGQARLID
NQSVTLAQ"
misc_feature complement(220015..220845)
/gene="panC"
/locus_tag="SeAg_B0215"
/note="Pantoate-beta-alanine ligase; Region: PanC;
cd00560"
/db_xref="CDD:185673"
misc_feature complement(order(220279..220290,220312..220320,
220381..220383,220390..220395,220399..220404,
220444..220449,220456..220458,220633..220635,
220663..220665,220672..220674,220726..220728,
220735..220740,220744..220746,220753..220764))
/gene="panC"
/locus_tag="SeAg_B0215"
/note="active site"
/db_xref="CDD:185673"
misc_feature complement(order(220288..220293,220312..220317,
220381..220383,220390..220395,220399..220404,
220444..220449,220663..220665,220726..220728,
220735..220737,220744..220746,220756..220764))
/gene="panC"
/locus_tag="SeAg_B0215"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:185673"
misc_feature complement(order(220381..220383,220435..220437,
220444..220449,220663..220665,220672..220674,
220756..220758,220762..220764))
/gene="panC"
/locus_tag="SeAg_B0215"
/note="pantoate-binding site; other site"
/db_xref="CDD:185673"
misc_feature complement(220735..220746)
/gene="panC"
/locus_tag="SeAg_B0215"
/note="HXXH motif; other site"
/db_xref="CDD:185673"
gene complement(220971..221762)
/gene="panB"
/locus_tag="SeAg_B0216"
/db_xref="GeneID:6796932"
CDS complement(220971..221762)
/gene="panB"
/locus_tag="SeAg_B0216"
/EC_number="2.1.2.11"
/note="'catalyzes the formation of tetrahydrofolate and
2-dehydropantoate from 5,10-methylenetetrahydrofolate and
3-methyl-2-oxobutanoate'"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_002145183.1"
/db_xref="GI:197248812"
/db_xref="GeneID:6796932"
/translation="MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGINVMLVG
DSLGMTIQGHDSTLPVTVEDIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQACENAAI
VMRAGANMVKIEGGAWLVDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKIQGRGDAGQ
MLLDDALALEAAGAQLLVLECVPVELAKRVTEALSIPVIGIGAGNVTDGQILVMHDAF
GITGGHIPKFAKNFLAEAGDMRAAVRQYMAEVESGVYPGEEHSFH"
misc_feature complement(220995..221747)
/gene="panB"
/locus_tag="SeAg_B0216"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature complement(order(221043..221057,221064..221066,
221106..221111,221118..221120,221238..221240,
221319..221330,221334..221339,221367..221384,
221436..221438,221448..221453,221460..221462,
221472..221474,221499..221504,221541..221543,
221550..221552,221559..221564,221571..221573,
221586..221591,221601..221618,221622..221624,
221667..221669,221676..221687,221742..221747))
/gene="panB"
/locus_tag="SeAg_B0216"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature complement(order(221124..221126,221130..221132,
221223..221225,221340..221342,221355..221357,
221427..221429,221511..221513,221625..221633,
221637..221639,221694..221696))
/gene="panB"
/locus_tag="SeAg_B0216"
/note="active site"
/db_xref="CDD:119342"
misc_feature complement(order(221427..221429,221511..221513,
221628..221630))
/gene="panB"
/locus_tag="SeAg_B0216"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene complement(221883..222362)
/gene="folK"
/locus_tag="SeAg_B0217"
/db_xref="GeneID:6796613"
CDS complement(221883..222362)
/gene="folK"
/locus_tag="SeAg_B0217"
/EC_number="2.7.6.3"
/note="'catalyzes the formation of
2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
diphosphate from
2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and
ATP'"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_002145184.1"
/db_xref="GI:197250359"
/db_xref="GeneID:6796613"
/translation="MTIAYIALGSNLASPLEQVNAALKAIADIPDSRIVTVSSFYRTP
PLGPQDQPDYLNAAVALDTALAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF
GDEVINTDRLTVPHYDMKNRGFMLWPLFEIAPELIFPDGISLHQHLTHLGAAKPAHW"
misc_feature complement(221967..222353)
/gene="folK"
/locus_tag="SeAg_B0217"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature complement(order(221991..221993,221997..221999,
222012..222017,222024..222026,222066..222071,
222075..222077,222084..222086,222093..222095,
222108..222110,222114..222116,222129..222131,
222138..222140,222150..222152,222195..222197,
222201..222203,222225..222227,222231..222236,
222336..222338))
/gene="folK"
/locus_tag="SeAg_B0217"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature complement(order(221997..221999,222012..222017,
222024..222026,222066..222071,222084..222086,
222108..222110,222114..222116,222129..222131,
222138..222140,222150..222152))
/gene="folK"
/locus_tag="SeAg_B0217"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene complement(222359..223723)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/db_xref="GeneID:6795083"
CDS complement(222359..223723)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/EC_number="2.7.7.19"
/note="Polymerase that creates the 3' poly(A) tail found
in some mRNA's"
/codon_start=1
/transl_table=11
/product="poly(A) polymerase"
/protein_id="YP_002145185.1"
/db_xref="GI:197249173"
/db_xref="GeneID:6795083"
/translation="MLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRL
NKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMF
GPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS
VADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAE
PIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG
DSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLLEMAQKIAQESGLAYYDAF
ALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLMEHPKFRAAFDL
LELRAQVENNTELQRLAQWWAEFQASAPPEQKGMLNELDDDPAPRRRRSRPRKRAPRR
EGTV"
misc_feature complement(222425..223723)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="poly(A) polymerase I; Provisional; Region: pcnB;
PRK11623"
/db_xref="CDD:183239"
misc_feature complement(223190..223624)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature complement(order(223259..223261,223268..223279,
223385..223387,223400..223402,223439..223441,
223511..223513,223517..223519,223544..223549,
223556..223561))
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="active site"
/db_xref="CDD:143388"
misc_feature complement(order(223259..223261,223271..223279,
223511..223513,223517..223519,223547..223549,
223556..223561))
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature complement(order(223400..223402,223511..223513,
223517..223519))
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature complement(222908..223099)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
misc_feature complement(222425..222754)
/gene="pcnB"
/locus_tag="SeAg_B0218"
/note="Polymerase A arginine-rich C-terminus; Region:
PolyA_pol_arg_C; pfam12626"
/db_xref="CDD:204987"
gene complement(223918..224859)
/locus_tag="SeAg_B0219"
/db_xref="GeneID:6795931"
CDS complement(223918..224859)
/locus_tag="SeAg_B0219"
/EC_number="6.1.1.-"
/note="'this tRNA synthetase lacks the tRNA anticodon
interaction domain; instead this enzyme modifies tRNA(Asp)
with glutamate by esterifying glutamate to the
2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of
queosine generating a modified nucleoside at the first
anticodon position of tRNAAsp; the modified tRNA does not
bind elongation factor Tu'"
/codon_start=1
/transl_table=11
/product="glutamyl-Q tRNA(Asp) synthetase"
/protein_id="YP_002145186.1"
/db_xref="GI:197248628"
/db_xref="GeneID:6795931"
/translation="MTGGSFPALFFIARSMTDSHYIGRFAPSPSGELHFGSLIAALGS
YLQARAQRGIWRVRIEDIDPPREVPGAAATILRQLEHYGLHWDGEVLWQSQRHEAYRE
ALAWLHEQGLSYYCTCPRSRIQRLGGIYDGHCRTLCHGPENAAVRIKQQHPVMRFHDA
LRGDIQADPQLASEDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQLS
LYKQFGWRAPGYVHLPLALNEQGAKLSKQNHAPALATGDPRPVLVQALRFLGQRDVVA
WQEMSVEELLRFAVTHWRLTAVPTSANVNPAFSNASR"
misc_feature complement(<223930..224814)
/locus_tag="SeAg_B0219"
/note="Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis]; Region:
GlnS; COG0008"
/db_xref="CDD:30358"
misc_feature complement(223936..224814)
/locus_tag="SeAg_B0219"
/note="glutamyl-Q tRNA(Asp) synthetase; Reviewed; Region:
PRK05710"
/db_xref="CDD:180216"
misc_feature complement(order(224122..224127,224749..224760))
/locus_tag="SeAg_B0219"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(224122..224124,224749..224751,
224758..224760))
/locus_tag="SeAg_B0219"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(224749..224760)
/locus_tag="SeAg_B0219"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(224122..224127)
/locus_tag="SeAg_B0219"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene complement(224883..225338)
/gene="dksA"
/locus_tag="SeAg_B0220"
/db_xref="GeneID:6795842"
CDS complement(224883..225338)
/gene="dksA"
/locus_tag="SeAg_B0220"
/note="identified by match to protein family HMM PF01258;
match to protein family HMM TIGR02420"
/codon_start=1
/transl_table=11
/product="RNA polymerase-binding transcription factor"
/protein_id="YP_002145187.1"
/db_xref="GI:197248103"
/db_xref="GeneID:6795842"
/translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFKRIL
EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
misc_feature complement(224886..225338)
/gene="dksA"
/locus_tag="SeAg_B0220"
/note="RNA polymerase-binding transcription factor;
Provisional; Region: dksA; PRK10778"
/db_xref="CDD:182722"
gene complement(225515..226219)
/gene="sfsA"
/locus_tag="SeAg_B0221"
/db_xref="GeneID:6795223"
CDS complement(225515..226219)
/gene="sfsA"
/locus_tag="SeAg_B0221"
/note="Regulatory factor involved in maltose metabolism"
/codon_start=1
/transl_table=11
/product="sugar fermentation stimulation protein A"
/protein_id="YP_002145188.1"
/db_xref="GI:197248142"
/db_xref="GeneID:6795223"
/translation="MLFSPPLQRATLIQRYKRFLADVITPDGTTLTLHCPNTGAMTGC
ATPGDTVWYSTSENTKRKYPHTWELTETQFGAFICVNTLRANQLTKEAIQENRLPALE
GYNILKSEVKYGAERSRIDFMLQADFRPDCYIEVKSVTLAEKENGYFPDAITERGQKH
LRELMGVAAAGHRAVVVFAVLHSAITRFSPARHIDIKYAQLLSEAQNKGVEVLAYKAE
LSAQKMELNEPVPITL"
misc_feature complement(225518..226219)
/gene="sfsA"
/locus_tag="SeAg_B0221"
/note="putative DNA-binding transcriptional regulator;
Reviewed; Region: PRK00347"
/db_xref="CDD:178983"
gene complement(226236..226766)
/locus_tag="SeAg_B0222"
/db_xref="GeneID:6793082"
CDS complement(226236..226766)
/locus_tag="SeAg_B0222"
/EC_number="6.5.1.-"
/note="identified by match to protein family HMM PF02834;
match to protein family HMM TIGR02258"
/codon_start=1
/transl_table=11
/product="2'-5' RNA ligase"
/protein_id="YP_002145189.1"
/db_xref="GI:197251638"
/db_xref="GeneID:6793082"
/translation="MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHL
TLAFLGDVSSDKQRALAQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQL
ANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG
QGRTRYAELQRWTLGE"
misc_feature complement(226239..226766)
/locus_tag="SeAg_B0222"
/note="2'-5' RNA ligase; Provisional; Region: PRK15124"
/db_xref="CDD:185079"
misc_feature complement(226500..226736)
/locus_tag="SeAg_B0222"
/note="LigT like Phosphoesterase; Region: LigT_PEase;
pfam02834"
/db_xref="CDD:202422"
misc_feature complement(226281..226493)
/locus_tag="SeAg_B0222"
/note="LigT like Phosphoesterase; Region: LigT_PEase;
pfam02834"
/db_xref="CDD:202422"
gene 226794..229268
/gene="hrpB"
/locus_tag="SeAg_B0223"
/db_xref="GeneID:6796368"
CDS 226794..229268
/gene="hrpB"
/locus_tag="SeAg_B0223"
/EC_number="3.6.1.-"
/note="similar in sequence to the ATP-dependent RNA
helicase HrpA"
/codon_start=1
/transl_table=11
/product="ATP-dependent RNA helicase HrpB"
/protein_id="YP_002145190.1"
/db_xref="GI:197247716"
/db_xref="GeneID:6796368"
/translation="MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKTAPQVLLSAPT
GAGKSTWLPLQLLQQGPVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQ
SCVGPRTRLEVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQG
LRDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMA
TAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPA
PAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDARTGLTRLVMQRISQASMTQ
RAGRAGRLAPGICLHLLAKEQAERAAAQSDPEILHSDLSGLLMEVLQWGCHDPASLFW
LDRPPEVNLQAARRLLLMLGALEGERLSARGRKMAAMGNDPRLAAMLVNADEGDSAAT
AAMLAAILEDPPRGGGTDLSVLFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLA
RAFSDRIARRRGQEGRYQLANGMGTMLDADDALGRHEWLIAPLLLQGSASPDARILLA
QPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVSVQPLAKPSEEELH
QAMLNGIRDRGLAVLNWTPEAEQFRLRLHCAAKWLPEYDWPAVDEASLLATLENWLLP
HMTGVQSLRSLKSLNVTQALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYHEDNPP
ALAVRMQEMFGEAKTPTIAQGRVSLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEM
KGRYPKHVWPDDPANTAPTRRTKKYS"
misc_feature 226839..229265
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="ATP-dependent RNA helicase HrpB; Provisional;
Region: PRK11664"
/db_xref="CDD:183267"
misc_feature 226905..227315
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 226926..226940
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 227205..227216
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 227454..227843
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(227496..227507,227574..227579,227652..227660)
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(227676..227678,227793..227795,227805..227807,
227814..227816)
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 228828..229226
/gene="hrpB"
/locus_tag="SeAg_B0223"
/note="ATP-dependent helicase C-terminal; Region: HrpB_C;
pfam08482"
/db_xref="CDD:149509"
gene 229270..229422
/locus_tag="SeAg_B0224"
/db_xref="GeneID:6797116"
CDS 229270..229422
/locus_tag="SeAg_B0224"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145191.1"
/db_xref="GI:197250706"
/db_xref="GeneID:6797116"
/translation="MLYVASRPDKALIAIRQKGKLRDFFFCRLAEEYRIGPLRLYVAE
KKHGGE"
gene 229409..231931
/gene="mrcB"
/locus_tag="SeAg_B0225"
/db_xref="GeneID:6793835"
CDS 229409..231931
/gene="mrcB"
/locus_tag="SeAg_B0225"
/note="'bifunctional periplasmic enzyme; contains
transglycosylase and transpeptidase activity; major enzyme
for peptidoglycan biosynthesis in Escherichia coli;
transmembrane protein; forms dimers; three variants, one
of which may be a degradation product, while the other
appears to result from an alternative initiation site, are
found within the cell'"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 1b"
/protein_id="YP_002145192.1"
/db_xref="GI:197251303"
/db_xref="GeneID:6793835"
/translation="MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMP
RKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKVWQLPAAVY
GRMVNLEPDMPVSKNEMVKLLEATQYRLVTKMTRPGEFTVQANSIEMIRRPFDFPDSK
EGQVRARLTFSDGRLETIVNLDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPD
LLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSE
RSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPV
EELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQKIIDQELYDMLSAR
PLGVQPRGGVISPQPAFMQMVRQELQAKLGDKIKDLSGVKIFTTFDSVAQDAAEKAVV
EGIPALKKQRKLSDLETAMVVVDRFSGEVRAMVGGAEPQYAGYNRAMQARRSIGSLAK
PATYLTALSQPNLYRLNTWIADAPISLRQPNGQVWSPQNDDRRYSESGKVMLVDALTR
SMNVPTVNLGMALGLPAVTDTWTKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIA
SGGNRAPLSALRSVIAEDGKVLYQSYPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLG
AKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMAIYQR
YLANQTPTPLVLTPPEDVVDMGVDYDGNFVCSGGMRTLPVWTDDPNTLCQQGEMMQQQ
QQPSGNPFDQSSQPQQPAQQQPPKEEKSDGVAGWIKEMFGGN"
misc_feature 229409..231922
/gene="mrcB"
/locus_tag="SeAg_B0225"
/note="bifunctional glycosyl transferase/transpeptidase;
Reviewed; Region: mrcB; PRK09506"
/db_xref="CDD:181917"
misc_feature 230000..230494
/gene="mrcB"
/locus_tag="SeAg_B0225"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature 230816..231535
/gene="mrcB"
/locus_tag="SeAg_B0225"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
gene complement(232070..232210)
/locus_tag="SeAg_B0226"
/db_xref="GeneID:6793469"
CDS complement(232070..232210)
/locus_tag="SeAg_B0226"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145193.1"
/db_xref="GI:197250161"
/db_xref="GeneID:6793469"
/translation="MKVNDNVNDNYYYNRSMIGEISSQWQAIRGPTKTKGLRNNQMKR
KG"
gene 232224..234467
/gene="fhuA"
/locus_tag="SeAg_B0227"
/db_xref="GeneID:6797184"
CDS 232224..234467
/gene="fhuA"
/locus_tag="SeAg_B0227"
/note="involved with the transport of ferrichrome across
the outer membrane; binds the ferrichrome-iron ligand and
interacts with the TonB protein"
/codon_start=1
/transl_table=11
/product="ferrichrome outer membrane transporter"
/protein_id="YP_002145194.1"
/db_xref="GI:197250727"
/db_xref="GeneID:6797184"
/translation="MARLKTAQPNSSLRKIAVVVATAVSGMSVYAQAAVQPKEETITV
TAAPAAQESAWGPAATIAARQSATATKTDTPIQKVPQSISVVTAEEMALHQPKSVKEA
LSYTPGVAVGTRGASNTYDYLIIRGFAADGQSQNNYLNGLKMQGNFYNDAVIDPYMLE
RAEVMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEIQFKMGTDSLFQTGFDFSDALD
EEGVYSYRLTGLARSANAQQDRAEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGY
YGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLR
YAENKVSQNSVYGYGVCSDPANRDSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDT
QLQSKFATGEVDHTLLTGVDFMRMRNDINAWFGYDDSVPLLDLYNPVYTDFDFASRDP
ATSGPYQILNKQKQTGLYVQDQAQWDKVLVTLGGRYDWADQESLNRTTGITSKRDDKQ
FTWRGGVNYLFDNGITPYFSYSESFEPASQTGENGKIFAPSKGKQYEAGVKYVPNDRP
IVITGAVYQLTKTNNLMADPAGSFFSVEGGEIRARGVELEAKAALSASINVVGSYTYT
DAEYTTDTTYKGNTPAQVPKHMASLWGDYTFFDGPLSGLTLGTGGRFTGSSYGDPANS
FKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFQTYGCFWGAERQVV
ATATFRF"
misc_feature 232224..234464
/gene="fhuA"
/locus_tag="SeAg_B0227"
/note="ferrichrome outer membrane transporter;
Provisional; Region: PRK10044"
/db_xref="CDD:182206"
misc_feature 232467..234464
/gene="fhuA"
/locus_tag="SeAg_B0227"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature order(232467..232496,232524..232553,232590..232607,
232626..232628,232635..232655,232689..232721,
232755..232781)
/gene="fhuA"
/locus_tag="SeAg_B0227"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature order(233241..233243,233370..233372)
/gene="fhuA"
/locus_tag="SeAg_B0227"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene 234516..235313
/gene="fhuC"
/locus_tag="SeAg_B0228"
/db_xref="GeneID:6793857"
CDS 234516..235313
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter ATP-binding
subunit"
/protein_id="YP_002145195.1"
/db_xref="GI:197248095"
/db_xref="GeneID:6793857"
/translation="MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIG
HNGSGKSTLLKMLGRHQPPSEGDILLDNQPLASWSSKAFARKVAYLPQQLPQAEGMTV
RELVAIGRYPWHGALGRFGVADREKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAM
LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVVAVLHDINMAARYCDYL
VALRGGEMIAQGTPAELMRSDTLERIYGIPMGILPHPAGAAPVSFVY"
misc_feature 234516..235310
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="iron-hydroxamate transporter ATP-binding subunit;
Provisional; Region: PRK10575"
/db_xref="CDD:182561"
misc_feature 234552..235205
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="ATP-binding component of iron-siderophores, vitamin
B12 and hemin transporters and related proteins; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:213181"
misc_feature 234645..234668
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213181"
misc_feature order(234654..234659,234663..234671,234789..234791,
235029..235034,235131..235133)
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213181"
misc_feature 234780..234791
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="Q-loop/lid; other site"
/db_xref="CDD:213181"
misc_feature 234957..234986
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213181"
misc_feature 235017..235034
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="Walker B; other site"
/db_xref="CDD:213181"
misc_feature 235041..235052
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="D-loop; other site"
/db_xref="CDD:213181"
misc_feature 235119..235139
/gene="fhuC"
/locus_tag="SeAg_B0228"
/note="H-loop/switch region; other site"
/db_xref="CDD:213181"
gene 235313..236203
/locus_tag="SeAg_B0229"
/db_xref="GeneID:6795215"
CDS 235313..236203
/locus_tag="SeAg_B0229"
/note="Part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter; binds to all hydroxamate
siderophores"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter substrate-binding
subunit"
/protein_id="YP_002145196.1"
/db_xref="GI:197248555"
/db_xref="GeneID:6795215"
/translation="MRDLYPLTRRRLLTAMALSPLLWQMNTAQAAAIDPRRIVALEWL
PVELLLALGITPYGVADVPNYKLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
SAGYGPSPEKLARIAPGRGFDFSDGKKPLAVARRSLVELAQTLNLEAAAEKHLAQYDR
FIASQKPHFIRRGGRPLLMTTLIDPRHMLVLGPNCLFQEVLDEYGIVNAWQGETNFWG
STAVSLDRLAMYKEADVICFDHGNSTDMNALMATPLWQAMPFVRAGRFHRVPAVWFYG
ATLSTMHFVRILNNVLGGKA"
misc_feature 235412..236167
/locus_tag="SeAg_B0229"
/note="Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial receptors
in ABC transport of Fe3+-siderophores in many eubacterial
species. They belong to the TroA-like superfamily of
helical backbone metal receptor proteins...; Region: FhuD;
cd01146"
/db_xref="CDD:29749"
misc_feature 235469..236131
/locus_tag="SeAg_B0229"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature order(235514..235516,235562..235567,235628..235630,
235877..235879)
/locus_tag="SeAg_B0229"
/note="siderophore binding site; other site"
/db_xref="CDD:29749"
gene 236200..238257
/locus_tag="SeAg_B0230"
/db_xref="GeneID:6797004"
CDS 236200..238257
/locus_tag="SeAg_B0230"
/note="part of the FhuBCD ATP-dependent iron (III)
hydroxamate transporter involved in the high-affinity
transport of Fe(3+)-ferrichrome"
/codon_start=1
/transl_table=11
/product="iron-hydroxamate transporter permease subunit"
/protein_id="YP_002145197.1"
/db_xref="GI:197247572"
/db_xref="GeneID:6797004"
/translation="MSRKREMPDGGAKNALSDLRFGRFVGRIRRSRHPALLLLALFVA
ACWLTWVNFSVALPRSQWQQAIWSPDIDIIEQMIFHYSLLPRLAISLLVGAGLGLVGV
LFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGALTTQFAALTGACIVGALVFGV
AWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWSGVQR
LWPQLLGGVMLTLLLLRPMTLMGLDDGVARNLGLALSLARLAALSLAIVLSALLVNAV
GIIGFIGLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQIILWLTRVWMEVSTGS
VTALIGAPLLLWLLPRLKSMSAPDMNASDRVAAERRHVLAFAVAGGVLLLLATWGALS
FGRDAHGWTWASGTLLEELMPWRWPRILAALIAGVMLAVAGCIIQRLTGNPMASPEVL
GISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAATLLIIMIAAGRGGFSPQRMLLAG
MALSTAFTMLLMMLQASGDPRMAEVLTWIAGSTYNATGGQVTRTAIVMVILLAIVPLC
RRWLTILPLGGDAARAVGMALTPSRIALLALAACLTATATMTIGPLSFVGLMAPHIAR
MLGFRRTMPHMVISALAGGVLLVFADWCGRMALFPYQIPAGLLSSFIGAPYFIYLLRK
QSR"
misc_feature 236272..238254
/locus_tag="SeAg_B0230"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature 236524..237222
/locus_tag="SeAg_B0230"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(236524..236532,236890..236895,236899..236907,
236911..236916,236920..236937,236941..236949,
237070..237072,237091..237093)
/locus_tag="SeAg_B0230"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(236527..236529,236533..236535,236548..236550,
236707..236709,236713..236718,236725..236730,
236737..236742,236749..236751,236758..236763,
236767..236769,236800..236805,236812..236814,
237040..237042,237199..237201,237208..237213,
237220..237222)
/locus_tag="SeAg_B0230"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(236767..236769,236842..236844,237016..237018,
237028..237030,237160..237162,237190..237192)
/locus_tag="SeAg_B0230"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature 237454..238239
/locus_tag="SeAg_B0230"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(237508..237510,237520..237528,237889..237894,
237898..237906,237910..237915,237919..237936,
237940..237948,238069..238071,238090..238092)
/locus_tag="SeAg_B0230"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(237523..237525,237529..237531,237544..237546,
237706..237708,237712..237717,237724..237729,
237736..237741,237748..237750,237757..237762,
237766..237768,237799..237804,237811..237813,
238039..238041,238195..238197,238204..238209,
238216..238218,238225..238230,238237..238239)
/locus_tag="SeAg_B0230"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(237766..237768,237841..237843,238015..238017,
238027..238029,238159..238161,238186..238188)
/locus_tag="SeAg_B0230"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 238894..239010
/locus_tag="SeAg_B0231"
/db_xref="GeneID:6793215"
CDS 238894..239010
/locus_tag="SeAg_B0231"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145198.1"
/db_xref="GI:197250708"
/db_xref="GeneID:6793215"
/translation="MFFWLSRLACFVCFLNDKKYLLFNADDPLNKKHLSLGF"
gene 239198..239758
/locus_tag="SeAg_B0232"
/db_xref="GeneID:6793837"
CDS 239198..239758
/locus_tag="SeAg_B0232"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145199.1"
/db_xref="GI:197248071"
/db_xref="GeneID:6793837"
/translation="MNTAVKAAVAAALVMGVSSFANAAGSNTGTVTFTGTIEDSPCSI
VVGDEHQTVNLGHIGTGSLMGGKESSKVDFHIGLENCAFTTEKEASTVFSAIGNESSA
NPGSVALMRIGGGEMAGSSIVIGNHLGSAIKLGDAYSENLTMNGSVAAAKQTLNFKAW
VKGDSAATTIDTGEFSSTVNFTISYL"
misc_feature 239198..239755
/locus_tag="SeAg_B0232"
/note="putative fimbrial subunit StfA; Provisional;
Region: PRK15283"
/db_xref="CDD:185183"
gene 239844..242501
/locus_tag="SeAg_B0233"
/db_xref="GeneID:6795191"
CDS 239844..242501
/locus_tag="SeAg_B0233"
/note="identified by match to protein family HMM PF00577"
/codon_start=1
/transl_table=11
/product="fimbrial usher protein"
/protein_id="YP_002145200.1"
/db_xref="GI:197247605"
/db_xref="GeneID:6795191"
/translation="MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKD
DASLDLSRFSRKGYIMPGSYHLQVLVNQSQIAQDNIITYSVDNNDPDNTYPCLSPELV
SLLGLKPEIADKMIWINAGQCLQPEQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD
PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANY
RHENDSEDKDNFGSSSEQNWDWNRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGG
SLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQVPAGPFRIQDINETV
SGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSA
EASWGIANGWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGD
GTIQGNSFRASYAKDFDDIDSRLTFAGYRFSEENYMTMDEFIDTHNDDNDRQRTGHDK
EMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGISLSVNG
FRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINA
GRADNGATLDGYYRHQASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSV
NGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDVNDYYRNQVKIDITQLPEDAE
ATLSIAQATLTEGAIGYRRLEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVG
EDGSVYLIGINPGERLQVTWEGKTQCEAALPDPLPGDLFSGLLLPCIGDASSPEATQP
AEKPLLQLHTQRLTSSTQPEALSSRYPTH"
misc_feature 239844..242489
/locus_tag="SeAg_B0233"
/note="putative fimbrial outer membrane usher protein
StfC; Provisional; Region: PRK15284"
/db_xref="CDD:185184"
misc_feature 239943..240386
/locus_tag="SeAg_B0233"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature 240429..242120
/locus_tag="SeAg_B0233"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature 242157..242336
/locus_tag="SeAg_B0233"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene 242519..243271
/locus_tag="SeAg_B0234"
/db_xref="GeneID:6794702"
CDS 242519..243271
/locus_tag="SeAg_B0234"
/note="identified by match to protein family HMM PF00345"
/codon_start=1
/transl_table=11
/product="chaperone protein PapD"
/protein_id="YP_002145201.1"
/db_xref="GI:197248634"
/db_xref="GeneID:6794702"
/translation="MMPLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSIS
VDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASL
PQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ
RQGNGYQVSNPTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPV
LTYVNDYGARLPLIFNCTDNSCAVDEAKSRKS"
misc_feature 242519..243268
/locus_tag="SeAg_B0234"
/note="putative fimbrial chaperone protein StfD;
Provisional; Region: PRK15285"
/db_xref="CDD:185185"
misc_feature 242597..242953
/locus_tag="SeAg_B0234"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature 243017..243202
/locus_tag="SeAg_B0234"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene 243290..243802
/locus_tag="SeAg_B0235"
/db_xref="GeneID:6795849"
CDS 243290..243802
/locus_tag="SeAg_B0235"
/codon_start=1
/transl_table=11
/product="minor fimbrial subunit"
/protein_id="YP_002145202.1"
/db_xref="GI:197248086"
/db_xref="GeneID:6795849"
/translation="MRQWRLRLGTVTCAAMLSAVSMPLAAGSKTVNMTLTIVVNAAPP
CTVTGGEVEFGNVLTTKVDGVNYRQAVGYRLSCNGRVSDYLKLQIQGNAVTINGESVL
QTDVDGLGIRLQTATDGALISPGNTQWLSFQYSGGSGPAIEAIPVKNNGVTLTGGAFN
AGATLVVDYQ"
misc_feature 243290..243799
/locus_tag="SeAg_B0235"
/note="putative minor fimbrial subunit StfE; Provisional;
Region: PRK15286"
/db_xref="CDD:185186"
gene 243799..244275
/locus_tag="SeAg_B0236"
/db_xref="GeneID:6795206"
CDS 243799..244275
/locus_tag="SeAg_B0236"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial subunit"
/protein_id="YP_002145203.1"
/db_xref="GI:197249909"
/db_xref="GeneID:6795206"
/translation="MKKMALIVLISSSFAAQSAENLKFHGTLISPPNCTINNDQTIDV
EFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMAMTLTLSGSVSDFNPAAVNTSVAG
LGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDYQ"
misc_feature 243799..244272
/locus_tag="SeAg_B0236"
/note="putative minor fimbrial subunit StfF; Provisional;
Region: PRK15287"
/db_xref="CDD:185187"
gene 244275..244805
/locus_tag="SeAg_B0237"
/db_xref="GeneID:6792572"
CDS 244275..244805
/locus_tag="SeAg_B0237"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="minor fimbrial subunit StfG"
/protein_id="YP_002145204.1"
/db_xref="GI:197249314"
/db_xref="GeneID:6792572"
/translation="MAKRQALLHGAACILCGALILPVSAADNLHFSGSLVASPCTLTM
QGTGIAEVDFSSLDSSDFTPDGQSARKPLVFELTDCDSALSNGVQVTFTGTEATGMRG
ILAIDSHSGASGIGIGIETLSGVPVGMNDEEGAIFTLVTGNNALSLNAWVQRLPGEDL
VPGTFFASALVTFEYL"
misc_feature 244275..244802
/locus_tag="SeAg_B0237"
/note="putative minor fimbrial subunit StfG; Provisional;
Region: PRK15288"
/db_xref="CDD:185188"
gene 244802..245647
/locus_tag="SeAg_B0238"
/db_xref="GeneID:6795317"
CDS 244802..245647
/locus_tag="SeAg_B0238"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145205.1"
/db_xref="GI:197250557"
/db_xref="GeneID:6795317"
/translation="MMKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTLYYGIGPSTF
DRSILLNVMVDTHDGVYYGTWQLGGVFKNRPVPLQSWSGPEPAPTVVLRDFDNSVARS
SCQNMPASWHDCGSFTVDITVQSDDYGCPWLATSRVTAADGISGETYSPPDTRSSVCP
KVPVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDDRGAYC
RFVSSGITLNVLGCDQSSVTTSAVDHPITDVELHDINVAVNTRNIGSGQFTSTCSFQY
IIDEL"
misc_feature 244949..245644
/locus_tag="SeAg_B0238"
/note="Protein of unknown function (DUF2544); Region:
DUF2544; pfam11245"
/db_xref="CDD:151687"
gene complement(245746..247026)
/gene="hemL"
/locus_tag="SeAg_B0239"
/db_xref="GeneID:6794472"
CDS complement(245746..247026)
/gene="hemL"
/locus_tag="SeAg_B0239"
/EC_number="5.4.3.8"
/note="Converts (S)-4-amino-5-oxopentanoate to
5-aminolevulinate during the porphyrin biosynthesis
pathway"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_002145206.1"
/db_xref="GI:197250049"
/db_xref="GeneID:6794472"
/translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL
YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNL
VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
GQPNSPGVPADFAKHTLTCTYNNLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPE
FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGIHETLDELTTRLAEG
LLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVY
LAPSAFEAGFMSVAHSMDDINNTIDAARRVFATL"
misc_feature complement(245749..247026)
/gene="hemL"
/locus_tag="SeAg_B0239"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature complement(245758..247008)
/gene="hemL"
/locus_tag="SeAg_B0239"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(order(246232..246234,246307..246312,
246316..246318,246415..246417,246592..246594,
246598..246603,246679..246687))
/gene="hemL"
/locus_tag="SeAg_B0239"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(246232..246234,246307..246309,
246316..246318,246415..246417,246598..246603,
246679..246684))
/gene="hemL"
/locus_tag="SeAg_B0239"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(246232..246234)
/gene="hemL"
/locus_tag="SeAg_B0239"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 247053..247196
/locus_tag="SeAg_B0240"
/note="conserved hypothetical protein; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6794146"
gene 247196..248617
/locus_tag="SeAg_B0241"
/db_xref="GeneID:6793711"
CDS 247196..248617
/locus_tag="SeAg_B0241"
/note="Acts as an electrical shunt for an
outwardly-directed proton pump that is linked to amino
acid decarboxylation"
/codon_start=1
/transl_table=11
/product="chloride channel protein"
/protein_id="YP_002145207.1"
/db_xref="GI:197248672"
/db_xref="GeneID:6793711"
/translation="MKTDTSTFLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGT
LTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAP
EAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGR
MVLDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAV
FTGVIMSSIVFRIFNGEAPIIEVGKLSDAPVNTLWLYLILGIIFGCVGPVFNSLVLRT
QDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPEAAGGGFNLIPIAAAGNFSVGLLL
FIFIARVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIA
GMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILA
RTLAKQDAEQAAKNQNAPAGENT"
misc_feature 247352..248584
/locus_tag="SeAg_B0241"
/note="Chloride channel protein EriC [Inorganic ion
transport and metabolism]; Region: EriC; COG0038"
/db_xref="CDD:223116"
misc_feature 247352..248545
/locus_tag="SeAg_B0241"
/note="ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked...; Region: EriC;
cd01031"
/db_xref="CDD:238504"
misc_feature order(247511..247525,247631..247645,248258..248272,
248528..248530)
/locus_tag="SeAg_B0241"
/note="Cl- selectivity filter; other site"
/db_xref="CDD:238504"
misc_feature order(247514..247516,247520..247522,247637..247642,
248258..248266,248528..248530)
/locus_tag="SeAg_B0241"
/note="Cl- binding residues [ion binding]; other site"
/db_xref="CDD:238504"
misc_feature 247637..247639
/locus_tag="SeAg_B0241"
/note="pore gating glutamate residue; other site"
/db_xref="CDD:238504"
misc_feature order(247775..247777,247802..247804,247841..247843,
247862..247864,248402..248404,248411..248413,
248435..248437,248471..248473,248492..248497,
248504..248506)
/locus_tag="SeAg_B0241"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238504"
misc_feature 247802..247804
/locus_tag="SeAg_B0241"
/note="H+/Cl- coupling transport residue; other site"
/db_xref="CDD:238504"
gene 248699..249043
/gene="yadR"
/locus_tag="SeAg_B0242"
/db_xref="GeneID:6795887"
CDS 248699..249043
/gene="yadR"
/locus_tag="SeAg_B0242"
/note="essential respiratory protein A; may be involved in
the transfer of iron-sulfur clusters; essential for growth
using oxygen or alternate electron acceptors"
/codon_start=1
/transl_table=11
/product="iron-sulfur cluster insertion protein ErpA"
/protein_id="YP_002145208.1"
/db_xref="GI:197248019"
/db_xref="GeneID:6795887"
/translation="MSDDVALPLQFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
KSTCGCGSSFSI"
misc_feature 248699..249040
/gene="yadR"
/locus_tag="SeAg_B0242"
/note="iron-sulfur cluster insertion protein ErpA;
Provisional; Region: PRK13623"
/db_xref="CDD:184186"
gene 249298..250284
/locus_tag="SeAg_B0243"
/db_xref="GeneID:6797269"
CDS 249298..250284
/locus_tag="SeAg_B0243"
/note="identified by match to protein family HMM PF01548;
match to protein family HMM PF02371"
/codon_start=1
/transl_table=11
/product="invertase"
/protein_id="YP_002145209.1"
/db_xref="GI:197247385"
/db_xref="GeneID:6797269"
/translation="MCTLGIDVSKNKIDLCLLTAGPGGKKKHKVLTNEPAVARKVVDW
LNAQKCVPESVTVVLEATGIYHENLAYGLHEAGVSVCMANPCRVREFAHGMDILNKND
AVDAFVLACYGELKSPAVWVPPSPEVRKLRALLRQRDALREDVQRTVNRLEKANSTST
PQEVIRSLERTKSWLNEELARIEKLITDHTDNDPGLKADLDLLKSIKGVKDQVGREML
ALLKDGMFKSASQVAAYLGLTPVEKTSGSSVRGRPHMSKTGPSGVRAKLYVAALTASR
WNKQAKAIYERLVAKGKAKKAALGAVMRKLVHLCFGVLKTRLPWDENYVATA"
misc_feature 249307..249750
/locus_tag="SeAg_B0243"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:201852"
misc_feature 249466..250158
/locus_tag="SeAg_B0243"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:33349"
misc_feature 249898..250155
/locus_tag="SeAg_B0243"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:202223"
gene complement(250355..250978)
/locus_tag="SeAg_B0244"
/db_xref="GeneID:6793929"
CDS complement(250355..250978)
/locus_tag="SeAg_B0244"
/note="identified by match to protein family HMM PF03458"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145210.1"
/db_xref="GI:197249447"
/db_xref="GeneID:6793929"
/translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
TIRDMALDNGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWMLPVLDAVGLAVFV
GIGVNKAFLAETGPLVAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
HATAFYTFSVPLESASMMGMVVTLFIRLAAIRWHLKLPTFALDENGR"
misc_feature complement(250358..250978)
/locus_tag="SeAg_B0244"
/note="hypothetical protein; Provisional; Region:
PRK10578"
/db_xref="CDD:182564"
misc_feature complement(250739..250972)
/locus_tag="SeAg_B0244"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:217571"
misc_feature complement(250499..250711)
/locus_tag="SeAg_B0244"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:217571"
gene complement(251015..251815)
/locus_tag="SeAg_B0245"
/db_xref="GeneID:6793359"
CDS complement(251015..251815)
/locus_tag="SeAg_B0245"
/note="solute binding component of the vitamin B12
transport system BtuCDF"
/codon_start=1
/transl_table=11
/product="vitamin B12-transporter protein BtuF"
/protein_id="YP_002145211.1"
/db_xref="GI:197248660"
/db_xref="GeneID:6793359"
/translation="MAKQMFRALVALLLTLPVWLYAAPRVITLSPANTELAFAAGITP
VGVSSYSDYPPEAQKIEQVSTWQGMNLERIVALKPDLVVAWRGGNAERQVNQLTSLGI
KVMWVDAVSIEQIADTLRQLAAWSPQPEKAQQAAQTLLNEYAALNAEYAGKAKKRVFL
QFGMNPLFTSGKGSIQHQVLTTCGGENVFADSRVPWPQVSREQVLARHPQAIIVAGKA
GEILKIEQYWGNLLKIPVIPLNSDWFERASPRIILAAKQLCNALSQVN"
misc_feature complement(251018..251746)
/locus_tag="SeAg_B0245"
/note="vitamin B12-transporter protein BtuF; Provisional;
Region: PRK03379"
/db_xref="CDD:179575"
misc_feature complement(251036..251743)
/locus_tag="SeAg_B0245"
/note="Cobalamin binding protein BtuF. These proteins
have been shown to function as initial receptors in ABC
transport of vitamin B12 (cobalamin) in eubacterial and
some archaeal species. They belong to the TroA
superfamily of helical backbone metal receptor...; Region:
BtuF; cd01144"
/db_xref="CDD:29747"
misc_feature complement(order(251228..251230,251312..251314,
251555..251557,251561..251563,251666..251668,
251720..251725))
/locus_tag="SeAg_B0245"
/note="cobalamin binding residues [chemical binding];
other site"
/db_xref="CDD:29747"
misc_feature complement(order(251210..251212,251600..251602))
/locus_tag="SeAg_B0245"
/note="putative BtuC binding residues; other site"
/db_xref="CDD:29747"
misc_feature complement(order(251453..251458,251465..251467,
251474..251479,251483..251485,251492..251494,
251504..251506,251522..251524,251531..251533,
251558..251560))
/locus_tag="SeAg_B0245"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29747"
gene complement(251808..252506)
/gene="mtnN"
/locus_tag="SeAg_B0246"
/db_xref="GeneID:6795875"
CDS complement(251808..252506)
/gene="mtnN"
/locus_tag="SeAg_B0246"
/EC_number="3.2.2.16"
/EC_number="3.2.2.9"
/note="enables the cleavage of the glycosidic bond in both
5'-methylthioadenosine and S-adenosylhomocysteine"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase"
/protein_id="YP_002145212.1"
/db_xref="GI:197250711"
/db_xref="GeneID:6795875"
/translation="MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVA
LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADV
TAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAK
IRHNFPDAVAVEMEATAIAHVCYNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
TLMVETLVQKLAHG"
misc_feature complement(251817..252506)
/gene="mtnN"
/locus_tag="SeAg_B0246"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated; Region: PRK05584"
/db_xref="CDD:180148"
misc_feature complement(251820..252503)
/gene="mtnN"
/locus_tag="SeAg_B0246"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Region: MTA/SAH-Nsdase; TIGR01704"
/db_xref="CDD:130765"
gene 252549..254108
/gene="dgt"
/locus_tag="SeAg_B0247"
/db_xref="GeneID:6793840"
CDS 252549..254108
/gene="dgt"
/locus_tag="SeAg_B0247"
/EC_number="3.1.5.1"
/note="forms a homotetramer; requires magnesium for
activity; catalyzes the hydrolysis of dGTP to form
deoxyguanosine and triphosphate"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate triphosphohydrolase"
/protein_id="YP_002145213.1"
/db_xref="GI:197249964"
/db_xref="GeneID:6793840"
/translation="MRLWGSAFLRRGEDMASIDFRNKINWHRRYRSPQGVKTEHEILR
IFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRL
KEQNRLEEYGLDTLTGPFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAE
SQPLTHDRCVVSSLRLQEGEENLNDIRRKVRQDICHFEGNAQGIRLVHTLMRMNLTWA
QVGGILKYTRPAWWRGPVPDSHRYLMKKPGYYLSEEKYIARLRKELQLAPYSRFPLTW
IMEAADDISYCVADLEDAVEKRIFSVEQLYHHLYHAWGHHEKDSLFELVVGNAWEKSR
ANTLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPQIFAGTFNQALLEDASGFSRL
LELYKNVAVEHVFSHPDVEQLELQGYRVISGLLDIYQPLLSLSLNDFRELVKKERLKR
FPIESRLFQKLSTRHRLAYVEVVSKLPTDSAEYPVLEYYYRCRLIQDYISGMTDLYAW
DEYRRLMAVEQ"
misc_feature 252591..254102
/gene="dgt"
/locus_tag="SeAg_B0247"
/note="deoxyguanosinetriphosphate triphosphohydrolase;
Provisional; Region: dgt; PRK04926"
/db_xref="CDD:179894"
misc_feature 252774..>253001
/gene="dgt"
/locus_tag="SeAg_B0247"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; smart00471"
/db_xref="CDD:197745"
misc_feature 253719..254087
/gene="dgt"
/locus_tag="SeAg_B0247"
/note="Phosphohydrolase-associated domain; Region:
HD_assoc; pfam13286"
/db_xref="CDD:205466"
gene 254229..255665
/gene="degP"
/locus_tag="SeAg_B0248"
/db_xref="GeneID:6796905"
CDS 254229..255665
/gene="degP"
/locus_tag="SeAg_B0248"
/EC_number="3.4.21.-"
/note="protease Do; required at high temperature; degrades
damaged proteins"
/codon_start=1
/transl_table=11
/product="serine endoprotease"
/protein_id="YP_002145214.1"
/db_xref="GI:197250860"
/db_xref="GeneID:6796905"
/translation="MKHMKKTTLAMSALALSLGLALSPLSATAAETSSSAMTAQQMPS
LAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQDGSPFQNSPFCQGG
GNGGNGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGK
DPRSDIALIQIQNPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS
GLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNM
VKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGI
KAGDVITSLNGKPISSFAALRAQVGTMPVGSKISLGLLREGKAITVNLELQQSSQSQV
DSSTIFSGIEGAEMSNKGQDKGVVVSSVKANSPAAQIGLKKGDVIIGANQQPVKNIAE
LRKILDSKPSVLALNIQRGDSSIYLLMQ"
misc_feature 254346..255662
/gene="degP"
/locus_tag="SeAg_B0248"
/note="serine endoprotease; Provisional; Region: PRK10942"
/db_xref="CDD:182855"
misc_feature 254580..254990
/gene="degP"
/locus_tag="SeAg_B0248"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 255105..255374
/gene="degP"
/locus_tag="SeAg_B0248"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(255108..255119,255123..255125,255276..255281,
255288..255293)
/gene="degP"
/locus_tag="SeAg_B0248"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature 255438..255653
/gene="degP"
/locus_tag="SeAg_B0248"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene 255818..256975
/locus_tag="SeAg_B0249"
/db_xref="GeneID:6795763"
CDS 255818..256975
/locus_tag="SeAg_B0249"
/note="'regulates the expression of the operons for the
enzymes involved in galactarate, glucarate and glycerate
utilization'"
/codon_start=1
/transl_table=11
/product="carbohydrate diacid transcriptional activator
CdaR"
/protein_id="YP_002145215.1"
/db_xref="GI:197251250"
/db_xref="GeneID:6795763"
/translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
GELHEGALLVLSQGRVVDIDNAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLR
KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL
NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNS
FGRWDAEDHRKRVEQLISRMKENGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQ
RMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNNGLLRRTLTAWFRHN
VQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR"
misc_feature 255818..256972
/locus_tag="SeAg_B0249"
/note="carbohydrate diacid transcriptional activator CdaR;
Provisional; Region: PRK11477"
/db_xref="CDD:183155"
misc_feature 255833..256237
/locus_tag="SeAg_B0249"
/note="Putative sugar diacid recognition; Region:
Diacid_rec; pfam05651"
/db_xref="CDD:147680"
misc_feature 256793..256960
/locus_tag="SeAg_B0249"
/note="PucR C-terminal helix-turn-helix domain; Region:
HTH_30; pfam13556"
/db_xref="CDD:205734"
gene complement(257064..257450)
/locus_tag="SeAg_B0250"
/db_xref="GeneID:6793414"
CDS complement(257064..257450)
/locus_tag="SeAg_B0250"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145216.1"
/db_xref="GI:197247544"
/db_xref="GeneID:6793414"
/translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAK
SVKFKYPRQRKTVVADGIGQGYKEVQEISPNLRYVIDELDQICQRDRSELDLKRKILD
DLRHLESVVANKISEIEADLDKLTRK"
misc_feature complement(257076..257450)
/locus_tag="SeAg_B0250"
/note="hypothetical protein; Provisional; Region:
PRK13677"
/db_xref="CDD:184234"
gene 257697..258998
/locus_tag="SeAg_B0251"
/db_xref="GeneID:6793187"
CDS 257697..258998
/locus_tag="SeAg_B0251"
/note="identified by match to protein family HMM PF00083;
match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="shikimate transporter"
/protein_id="YP_002145217.1"
/db_xref="GI:197251680"
/db_xref="GeneID:6793187"
/translation="MSGTYNATIRRVVISAWIGNSIEYYDFLLYGLASALVFGPLFFP
GASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGC
LPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGL
TGQLLATGVFIVVTQLPKEALLSWGWRIPFLLSALLVLPGLYMRHRLDETPVFRAFKK
QQAINHRQQKEERPVVKVVREQWRSILLIIILRFAESVPFFLATVFAVSWATTQLGIA
SLTILYIVMFTCLLAYPMHVLFGIMSDRRGCRQVYIFGALFVAAMAFPFFWLLESRSL
ILMTMGYVLLINIGHNSLNAVQPSFFAGLFHPPVRYSGSSIGAQLGAVVAGGFTPFIA
KALSAVYDNSWALVAGYVVLTALASAFAAKIAPETVLPHSP"
misc_feature 257724..258959
/locus_tag="SeAg_B0251"
/note="shikimate transporter; Provisional; Region:
PRK09952"
/db_xref="CDD:182163"
misc_feature 257775..258953
/locus_tag="SeAg_B0251"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(257796..257798,257805..257813,257817..257822,
257871..257873,257880..257885,257892..257894,
257904..257909,257913..257918,258078..258083,
258090..258095,258102..258107,258114..258116,
258150..258155,258162..258167,258183..258185,
258459..258461,258468..258473,258480..258485,
258492..258494,258534..258536,258546..258548,
258558..258560,258567..258569,258579..258581,
258723..258725,258732..258737,258744..258746,
258756..258761,258768..258770,258801..258806,
258813..258818,258825..258830,258837..258839)
/locus_tag="SeAg_B0251"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(259034..259858)
/gene="dapD"
/locus_tag="SeAg_B0252"
/db_xref="GeneID:6795495"
CDS complement(259034..259858)
/gene="dapD"
/locus_tag="SeAg_B0252"
/EC_number="2.3.1.117"
/note="catalyzes the formation of
N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and
tetrahydrodipicolinate in the lysine biosynthetic pathway"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_002145218.1"
/db_xref="GI:197248248"
/db_xref="GeneID:6795495"
/translation="MQQLQNVIETAFERRADITPVNVDTVTREAVNQVISLLDSGALR
VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEG
FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTKIYDRE
TGEVHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
misc_feature complement(259046..259858)
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature complement(259142..259555)
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature complement(order(259142..259144,259148..259159,
259238..259240,259292..259294,259298..259300,
259376..259378,259424..259432,259478..259480,
259484..259486,259532..259537,259544..259549))
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature complement(order(259247..259252,259283..259285,
259298..259306,259343..259345,259352..259357,
259361..259363,259382..259384,259388..259390,
259415..259417,259436..259438,259472..259474,
259487..259489,259523..259525,259547..259549))
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="active site"
/db_xref="CDD:100041"
misc_feature complement(order(259355..259357,259415..259417,
259436..259438,259472..259474,259487..259489,
259523..259525,259547..259549))
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature complement(order(259247..259252,259283..259285,
259298..259306,259343..259345,259361..259363,
259379..259384))
/gene="dapD"
/locus_tag="SeAg_B0252"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene complement(259888..262560)
/gene="glnD"
/locus_tag="SeAg_B0253"
/db_xref="GeneID:6796535"
CDS complement(259888..262560)
/gene="glnD"
/locus_tag="SeAg_B0253"
/EC_number="2.7.7.59"
/note="catalyzes the uridylylation or deuridylylation of
the PII nitrogen regulatory protein"
/codon_start=1
/transl_table=11
/product="PII uridylyl-transferase"
/protein_id="YP_002145219.1"
/db_xref="GI:197248735"
/db_xref="GeneID:6796535"
/translation="MNTLPEQHANTALPTLPDQPQNPGVWPRAELTVAGIKARIDIFQ
HWLGEAFDSGICAEQLIEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHP
LSDIDLLILSRKKLPDEQAQKVGELLTLLWDVKLDVGHSVRTLEECLLEGLSDLTVAT
NLIETRLLIGDVALFLALQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTPAERAELNECLHILWRIRFAL
HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNDPVERMMKDYFRVTRRVSELNQMLLQLF
DEAILALPADEKPRPVDDEFQLRGTLIDLRDDTLFIREPQAILRMFYMMVRNSAITGI
YSTTLRHLRHARRHLSQPLCYIPEARTLFLSMLRHPGAVSRGLLPMHRHSVLWAYMPQ
WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFAKEETRQRHPLCVDLWPRLPHPELIL
IAALFHDIAKGRGGDHSVLGAQDVLTFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
DIQDPEVIKQFAEEVQTETRLRFLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEAALHKIWTRCRANYFVRHSPNQLAW
HARHLLQHDLSQPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
FTTRDGMAMDTFIVLEPDGNPLAADRHDVIRTGLEQTITQRSWQPPQPRRQPAKLRHF
TVETEVNFLPTHTDRKSFMELIALDQPGLLARVGQIFADLGISLHGARITTIGERVED
LFIIATADRRALNNVLQLEVQQRLTAALNPNDKG"
misc_feature complement(259891..262542)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="PII uridylyl-transferase; Provisional; Region:
PRK05007"
/db_xref="CDD:179913"
misc_feature complement(262012..262422)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature complement(order(262162..262164,262240..262242,
262246..262248))
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature complement(261568..261987)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:149407"
misc_feature complement(260707..261165)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(260770..260772,261016..261021,
261148..261150))
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(261016..261018)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(260227..260442)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="ACT domain family, ACT_UUR-like_1, includes the
first of two C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_UUR-like_1; cd04900"
/db_xref="CDD:153172"
misc_feature complement(259909..260112)
/gene="glnD"
/locus_tag="SeAg_B0253"
/note="C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_ACR-UUR-like_2; cd04899"
/db_xref="CDD:153171"
gene complement(262798..263592)
/gene="map"
/locus_tag="SeAg_B0254"
/db_xref="GeneID:6795624"
CDS complement(262798..263592)
/gene="map"
/locus_tag="SeAg_B0254"
/EC_number="3.4.11.18"
/note="'catalyzes the removal of N-terminal amino acids
from peptides and arylamides; generally Co(II) however
activity has been shown for some methionine
aminopeptidases with Zn, Fe, or Mn'"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase"
/protein_id="YP_002145220.1"
/db_xref="GI:197249306"
/db_xref="GeneID:6795624"
/translation="MAISIKTSEDIEKMRVAGRLAAEVLEMIEPYIKPGVTTGELDRI
CNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIK
DEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGE
GFSVVREYCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMK
DGWTVKTKDRSLSAQYEHTIVVTENGCEILTLRKDDTIPAIITHDE"
misc_feature complement(262843..263562)
/gene="map"
/locus_tag="SeAg_B0254"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:238519"
misc_feature complement(order(262888..262890,262981..262983,
263080..263082,263269..263271,263302..263304,
263356..263358))
/gene="map"
/locus_tag="SeAg_B0254"
/note="active site"
/db_xref="CDD:238519"
gene 263876..264014
/locus_tag="SeAg_B0255"
/db_xref="GeneID:6795309"
ncRNA 263876..264014
/locus_tag="SeAg_B0255"
/ncRNA_class="other"
/product="t44 RNA"
/db_xref="GeneID:6795309"
gene 264043..264768
/gene="rpsB"
/locus_tag="SeAg_B0256"
/db_xref="GeneID:6794916"
CDS 264043..264768
/gene="rpsB"
/locus_tag="SeAg_B0256"
/note="one of the last subunits in the assembly of the 30S
subunit; absence of S2 does not inhibit assembly but
results in an inactive subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S2"
/protein_id="YP_002145221.1"
/db_xref="GI:197249787"
/db_xref="GeneID:6794916"
/translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
KTVPMFNEALAELNKISARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLT
NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVA
ATVREGRSQDLASQAEESFVEAE"
misc_feature 264067..264711
/gene="rpsB"
/locus_tag="SeAg_B0256"
/note="Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli RPS2
is essential for the binding of...; Region: RPS2; cd01425"
/db_xref="CDD:100106"
misc_feature order(264115..264120,264145..264153,264325..264327,
264331..264339,264346..264351,264565..264567,
264574..264576)
/gene="rpsB"
/locus_tag="SeAg_B0256"
/note="rRNA interaction site [nucleotide binding]; other
site"
/db_xref="CDD:100106"
misc_feature order(264571..264576,264580..264582,264622..264633)
/gene="rpsB"
/locus_tag="SeAg_B0256"
/note="S8 interaction site; other site"
/db_xref="CDD:100106"
misc_feature 264676..264693
/gene="rpsB"
/locus_tag="SeAg_B0256"
/note="putative laminin-1 binding site; other site"
/db_xref="CDD:100106"
gene 265026..265877
/gene="tsf"
/locus_tag="SeAg_B0257"
/db_xref="GeneID:6795732"
CDS 265026..265877
/gene="tsf"
/locus_tag="SeAg_B0257"
/note="EF-Ts; functions during elongation stage of protein
translation; forms a dimer; associates with EF-Tu-GDP
complex and promotes exchange of GDP to GTP resulting in
regeneration of the active form of EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Ts"
/protein_id="YP_002145222.1"
/db_xref="GI:197250881"
/db_xref="GeneID:6795732"
/translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
GAIKAAKKAGNVAADGVIKTKINGNVAFILEVNCQTDFVAKDAGFQAFADKVLDAAVA
GKITDVEVLKAQFEEERVALVAKIGENINIRRVASLEGDVLGSYQHGARIGVLVAAKG
ADEELVKQLAMHVAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
RMKKFTGEVSLTGQPFVMEPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEV
AAMSKQS"
misc_feature 265026..265868
/gene="tsf"
/locus_tag="SeAg_B0257"
/note="elongation factor Ts; Provisional; Region: tsf;
PRK09377"
/db_xref="CDD:181810"
misc_feature 265035..265142
/gene="tsf"
/locus_tag="SeAg_B0257"
/note="UBA/TS-N domain; Region: UBA; pfam00627"
/db_xref="CDD:201355"
misc_feature 265206..>265313
/gene="tsf"
/locus_tag="SeAg_B0257"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
misc_feature 265440..265814
/gene="tsf"
/locus_tag="SeAg_B0257"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
gene 266022..266747
/gene="pyrH"
/locus_tag="SeAg_B0258"
/db_xref="GeneID:6795785"
CDS 266022..266747
/gene="pyrH"
/locus_tag="SeAg_B0258"
/EC_number="2.7.4.22"
/note="Catalyzes the phosphorylation of UMP to UDP"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_002145223.1"
/db_xref="GI:197251322"
/db_xref="GeneID:6795785"
/translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
RLMSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
VLKATKVDGVFTADPAKDPSATMYDQLTYSEVLDKELKVMDLAAFTLARDHKLPIRVF
NMNKPGALRRVVMGEKEGTLITE"
misc_feature 266049..266741
/gene="pyrH"
/locus_tag="SeAg_B0258"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:239787"
misc_feature order(266064..266066,266073..266078,266187..266195,
266454..266459,266514..266519,266526..266528,
266532..266534,266538..266543)
/gene="pyrH"
/locus_tag="SeAg_B0258"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:239787"
misc_feature order(266187..266195,266205..266210,266250..266252,
266259..266264,266433..266435,266439..266444,
266448..266456)
/gene="pyrH"
/locus_tag="SeAg_B0258"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:239787"
misc_feature order(266226..266231,266253..266258,266277..266279,
266298..266300,266328..266330,266370..266372,
266382..266384,266391..266393,266409..266411,
266433..266435,266439..266447,266472..266474,
266481..266486,266652..266654)
/gene="pyrH"
/locus_tag="SeAg_B0258"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:239787"
gene 266894..267451
/gene="frr"
/locus_tag="SeAg_B0259"
/db_xref="GeneID:6794607"
CDS 266894..267451
/gene="frr"
/locus_tag="SeAg_B0259"
/note="Rrf; Frr; ribosome-recycling factor; release factor
4; RF4; recycles ribosomes upon translation termination
along with release factor RF-3 and elongation factor EF-G;
A GTPase-dependent process results in release of 50S from
70S; inhibited by release factor RF-1; essential for
viability; structurally similar to tRNAs"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_002145224.1"
/db_xref="GI:197251811"
/db_xref="GeneID:6794607"
/translation="MISDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEY
YGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPL
PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEV
QKMTDAAIKKVDAALADKEAELMQF"
misc_feature 266894..267448
/gene="frr"
/locus_tag="SeAg_B0259"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature 266906..267442
/gene="frr"
/locus_tag="SeAg_B0259"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature order(266978..266989,267197..267208)
/gene="frr"
/locus_tag="SeAg_B0259"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene 267593..268789
/gene="dxr"
/locus_tag="SeAg_B0260"
/db_xref="GeneID:6793707"
CDS 267593..268789
/gene="dxr"
/locus_tag="SeAg_B0260"
/EC_number="2.7.4.-"
/note="catalyzes the NADP-dependent rearrangement and
reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to
2-C-methyl-D-erythritol 4-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_002145225.2"
/db_xref="GI:449785016"
/db_xref="GeneID:6793707"
/translation="MKQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAE
QCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIV
GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL
PQSIQHNLGYADLEQNGVTSILLTGSGGPFRETPMCDLAAMTPDQACRHPNWSMGRKI
SVDSATMMNKGLEYIEARWLFNASARQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
RTPIAHTMAWPNRVTSGAQPLDFCKLSALTFSAPDYQRYPCLKLAMEAFEQGQAATTA
LNAANEITVAAFLAQQIRFTDIAGLNLAVLERMDLQEPASVEDVLQVDAIAREVARKQ
VIRLSR"
misc_feature 267593..268786
/gene="dxr"
/locus_tag="SeAg_B0260"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:180089"
misc_feature 267602..267988
/gene="dxr"
/locus_tag="SeAg_B0260"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:202340"
misc_feature 268028..268309
/gene="dxr"
/locus_tag="SeAg_B0260"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature 268406..268759
/gene="dxr"
/locus_tag="SeAg_B0260"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:205468"
gene 269102..269860
/gene="uppS"
/locus_tag="SeAg_B0261"
/db_xref="GeneID:6797119"
CDS 269102..269860
/gene="uppS"
/locus_tag="SeAg_B0261"
/EC_number="2.5.1.31"
/note="catalyzes the formation of UDP pyrophosphate from
isopentenyl pyrophosphate"
/codon_start=1
/transl_table=11
/product="UDP pyrophosphate synthase"
/protein_id="YP_002145226.1"
/db_xref="GI:197248928"
/db_xref="GeneID:6797119"
/translation="MLSATQPVSENLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
GAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
NVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEQ
VQAGVLRPDQIDEERLGQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV
LWPDFDEQDFEGALHAFANRERRFGGTEPGDDKA"
misc_feature 269150..269812
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS);
homodimers which catalyze the successive 1'-4 condensation
of the isopentenyl diphosphate (IPP) molecule to
trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP
to form long-chain polyprenyl...; Region: CIS_IPPS;
cd00475"
/db_xref="CDD:29593"
misc_feature 269168..269833
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="Putative undecaprenyl diphosphate synthase; Region:
Prenyltransf; pfam01255"
/db_xref="CDD:201689"
misc_feature 269174..269176
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="catalytic residue [active]"
/db_xref="CDD:29593"
misc_feature 269177..269188
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="putative FPP diphosphate binding site; other site"
/db_xref="CDD:29593"
misc_feature order(269297..269311,269351..269356,269360..269368,
269447..269449,269468..269470,269513..269515,
269519..269521)
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="putative FPP binding hydrophobic cleft; other site"
/db_xref="CDD:29593"
misc_feature order(269540..269542,269564..269566,269576..269578,
269585..269587,269612..269614,269693..269698,
269705..269707,269717..269719,269726..269728,
269738..269740)
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29593"
misc_feature order(269678..269680,269696..269698)
/gene="uppS"
/locus_tag="SeAg_B0261"
/note="putative IPP diphosphate binding site; other site"
/db_xref="CDD:29593"
gene 269873..270730
/gene="cdsA"
/locus_tag="SeAg_B0262"
/db_xref="GeneID:6792617"
CDS 269873..270730
/gene="cdsA"
/locus_tag="SeAg_B0262"
/EC_number="2.7.7.41"
/note="catalyzes the synthesis of CDP-diglyceride from CTP
and phosphatidate"
/codon_start=1
/transl_table=11
/product="CDP-diglyceride synthase"
/protein_id="YP_002145227.1"
/db_xref="GI:197249050"
/db_xref="GeneID:6792617"
/translation="MLKYRLISAFVLIPAVIAALFLLPPVGFAIITLVVCMLAAWEWG
QLSGFAARSQRVWLAVLCGLLLALMLFLLPEYHHNIRQPLVEMSLWASLGWWVVALLL
VLFYPGSAAIWRNSKTLRLIFGLLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLNVAPV
ILLICSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
LLLLVFRTL"
misc_feature 269873..270727
/gene="cdsA"
/locus_tag="SeAg_B0262"
/note="CDP-diglyceride synthase; Provisional; Region:
cdsA; PRK11624"
/db_xref="CDD:183240"
misc_feature 269873..270715
/gene="cdsA"
/locus_tag="SeAg_B0262"
/note="CDP-diglyceride synthetase [Lipid metabolism];
Region: CdsA; COG0575"
/db_xref="CDD:223648"
gene 270742..272094
/gene="rseP"
/locus_tag="SeAg_B0263"
/db_xref="GeneID:6797345"
CDS 270742..272094
/gene="rseP"
/locus_tag="SeAg_B0263"
/EC_number="3.4.24.-"
/note="catalyzes the cleavage of RseA which activates the
sigmaE-mediated stress response"
/codon_start=1
/transl_table=11
/product="zinc metallopeptidase RseP"
/protein_id="YP_002145228.1"
/db_xref="GI:197249547"
/db_xref="GeneID:6797345"
/translation="MLSILWNLAAFIIALGVLITVHEFGHFWVARRCGVRVERFSIGF
GKALWRRTDRYGTEYVIALIPLGGYVKMLDERAEPVAPELRRHAFNNKTVGQRAAIIA
AGPVANFIFAIFAYWLVFIIGVPGVRPVIGEITPNSIAAQAQIAPGTELKAVDGIETP
DWDAVRLQLVSKIGDQQTTVSVAPFGSDQRQDKTLDLRHWAFEPDKQDPVSSLGIRPR
GPQIEPVLSEVQANSAASKAGLQAGDRIVKVDGQPLTQWMKFVTFVRDNPGKPLALEI
ERQGSALSLTLTPDTKSVNGKAEGFAGVVPKIIPLPEEYKTIRQYGPFSAILEATDKT
WQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGVIYYLMFLALISVNLGI
INLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL
"
misc_feature 270745..272091
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="zinc metallopeptidase RseP; Provisional; Region:
PRK10779"
/db_xref="CDD:182723"
misc_feature 270763..>271101
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature order(270805..270810,270817..270819)
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="active site"
/db_xref="CDD:100084"
misc_feature 271087..271326
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature order(271090..271101,271105..271107,271234..271239,
271249..271254)
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature 271372..271608
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature order(271375..271386,271390..271392,271519..271524,
271531..271536)
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature <271831..272088
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature 271921..271932
/gene="rseP"
/locus_tag="SeAg_B0263"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100084"
gene 272126..274537
/gene="yaeT"
/locus_tag="SeAg_B0265"
/db_xref="GeneID:6792889"
CDS 272126..274537
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="'part of a complex with YfgL, YfiO, and NlpB
involved in outer membrane protein biosynthesis; involved
in the assembly of outer membrane proteins'"
/codon_start=1
/transl_table=11
/product="outer membrane protein assembly factor YaeT"
/protein_id="YP_002145229.1"
/db_xref="GI:197249707"
/db_xref="GeneID:6792889"
/translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGN
KSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR
NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQK
LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGN
LAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKT
VKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRL
GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
GTGYSVGINGTKNDYQTYSELSVTNPYFTVDGVSLGGRIFYNDFEADDADLSDYTNKS
YGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGDPDASDFAADDFT
FNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWVV
LGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGARTSGGDNDE
YEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEKYANSVRTSFFWDMGTVWDTN
WDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN
IGKTW"
misc_feature 272126..274534
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="outer membrane protein assembly factor YaeT;
Provisional; Region: PRK11067"
/db_xref="CDD:182941"
misc_feature 272195..272398
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; cl10520"
/db_xref="CDD:213120"
misc_feature 272399..272641
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature 272648..272914
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature 272921..273157
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature 273164..273388
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature 273467..274534
/gene="yaeT"
/locus_tag="SeAg_B0265"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene 274660..275145
/gene="skp"
/locus_tag="SeAg_B0266"
/db_xref="GeneID:6792809"
CDS 274660..275145
/gene="skp"
/locus_tag="SeAg_B0266"
/note="identified by match to protein family HMM PF03938"
/codon_start=1
/transl_table=11
/product="periplasmic chaperone"
/protein_id="YP_002145230.1"
/db_xref="GI:197250496"
/db_xref="GeneID:6792809"
/translation="MKKWLLAAGLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSN
TLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFE
KDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQV
K"
misc_feature 274660..275142
/gene="skp"
/locus_tag="SeAg_B0266"
/note="periplasmic chaperone; Provisional; Region:
PRK10780"
/db_xref="CDD:182724"
misc_feature 274729..275142
/gene="skp"
/locus_tag="SeAg_B0266"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:214922"
gene 275149..276174
/gene="lpxD"
/locus_tag="SeAg_B0267"
/db_xref="GeneID:6796707"
CDS 275149..276174
/gene="lpxD"
/locus_tag="SeAg_B0267"
/EC_number="3.1.26.4"
/note="adds the O-linked and N-linked 3(R)-hydroxy fatty
acids to the glucosamine disaccharide during lipid A
biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_002145231.1"
/db_xref="GI:197251563"
/db_xref="GeneID:6796707"
/translation="MPSIRLADLAEQLDAELHGDGDIVITGVASMQSATTGHITFMVN
PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
SAVIDATATLGSNVSVGANAVIESGVQLGDNVVIGAGCFVGKNSKIGAGSRLWANVTI
YHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRG
ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIE
RKVNQQD"
misc_feature 275200..276168
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:234858"
misc_feature 275209..275418
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:218175"
misc_feature 275473..276090
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature order(275509..275511,275521..275526,275578..275580,
275617..275619,275623..275625,275629..275631,
275665..275667,275671..275673,275689..275691,
275695..275697,275728..275736,275770..275772,
275782..275784,275788..275790,275794..275796,
275803..275811,275836..275838,275842..275850,
275854..275856,275866..275868,275884..275886,
275890..275892,275902..275910,275938..275940,
275956..275964,275974..275976,276010..276018,
276070..276072,276082..276084)
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature order(275695..275703,275842..275844,275854..275856,
275863..275868,275896..275901,275914..275922,
275971..275976,276007..276009)
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="active site"
/db_xref="CDD:100043"
misc_feature order(275695..275703,275863..275868,275917..275922,
275971..275976)
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature order(275842..275844,275854..275856,275896..275901,
275914..275916,276007..276009)
/gene="lpxD"
/locus_tag="SeAg_B0267"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene 276280..276735
/gene="fabZ"
/locus_tag="SeAg_B0268"
/db_xref="GeneID:6796776"
CDS 276280..276735
/gene="fabZ"
/locus_tag="SeAg_B0268"
/EC_number="4.2.1.-"
/note="in Pseudomonas aeruginosa this enzyme is a trimer
of dimers; essential for membrane formation; performs
third step of type II fatty acid biosynthesis; catalyzes
dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_002145232.1"
/db_xref="GI:197248328"
/db_xref="GeneID:6796776"
/translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
SVNEPFFQGHFPGKPILPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
misc_feature 276328..276717
/gene="fabZ"
/locus_tag="SeAg_B0268"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene 276739..277527
/gene="lpxA"
/locus_tag="SeAg_B0269"
/db_xref="GeneID:6794884"
CDS 276739..277527
/gene="lpxA"
/locus_tag="SeAg_B0269"
/EC_number="2.3.1.129"
/note="catalyzes the addition of
(R)-3-hydroxytetradecanoyl to the glucosamine disaccharide
in lipid A biosynthesis"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_002145233.1"
/db_xref="GI:197249032"
/db_xref="GeneID:6794884"
/translation="MIDKSAFIHPTAIVEDGAVIGANAHIGPFCIVGPQVEIGEGTVL
KSHVVVNGQTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
VQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREGLVAIRNA
YKLLYRSGKTLDEAKLEIAELAEKHPEVKAFTEFFERSTRGPIR"
misc_feature 276748..277524
/gene="lpxA"
/locus_tag="SeAg_B0269"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:179994"
misc_feature 276760..277515
/gene="lpxA"
/locus_tag="SeAg_B0269"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature order(276955..276957,276964..276966,277033..277035,
277102..277104,277111..277113,277168..277170,
277216..277221,277255..277257,277330..277332,
277348..277353)
/gene="lpxA"
/locus_tag="SeAg_B0269"
/note="active site"
/db_xref="CDD:100042"
gene 277527..278675
/gene="lpxB"
/locus_tag="SeAg_B0270"
/db_xref="GeneID:6797326"
CDS 277527..278675
/gene="lpxB"
/locus_tag="SeAg_B0270"
/EC_number="2.4.1.182"
/note="'catalyzes the formation of lipid A disaccharide
from UDP-2,3-diacylglucosamine and
2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is
a precursor of lipid A that anchors LPS to the OM'"
/codon_start=1
/transl_table=11
/product="lipid-A-disaccharide synthase"
/protein_id="YP_002145234.1"
/db_xref="GI:197249560"
/db_xref="GeneID:6797326"
/translation="MAAQRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGP
RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFTELKPDVFVGIDAPDF
NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRSTHMVLAFLPFEKAFYDKFNVP
CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
LRQRYPDLEVVVPLVNAKRREQFEKIKAEVAPDLAAHLLDGMAREAMIASDAALLASG
TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEYVSLPNLLAGRELVKELLQEECEP
QKLAEALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAADAVLELAQ"
misc_feature 277542..278672
/gene="lpxB"
/locus_tag="SeAg_B0270"
/note="lipid-A-disaccharide synthase; Reviewed; Region:
lpxB; PRK00025"
/db_xref="CDD:178802"
misc_feature 277542..278546
/gene="lpxB"
/locus_tag="SeAg_B0270"
/note="ipid-A-disaccharide synthase; Provisional; Region:
PRK14089"
/db_xref="CDD:184498"
gene 278672..279268
/gene="rnhB"
/locus_tag="SeAg_B0271"
/db_xref="GeneID:6796248"
CDS 278672..279268
/gene="rnhB"
/locus_tag="SeAg_B0271"
/EC_number="3.1.26.4"
/note="RNH2; RNase HII; binds manganese; endonuclease
which specifically degrades the RNA of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_002145235.1"
/db_xref="GI:197249555"
/db_xref="GeneID:6796248"
/translation="MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLN
DSKKLSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAP
EYVLIDGNRCPALPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFA
QHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS"
misc_feature 278708..279244
/gene="rnhB"
/locus_tag="SeAg_B0271"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(278717..278728,278918..278926,278933..278935,
278993..278995,279032..279034,279089..279091)
/gene="rnhB"
/locus_tag="SeAg_B0271"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(278717..278722,278993..278995,279047..279049)
/gene="rnhB"
/locus_tag="SeAg_B0271"
/note="active site"
/db_xref="CDD:187695"
gene 279292..282774
/gene="dnaE"
/locus_tag="SeAg_B0272"
/db_xref="GeneID:6796243"
CDS 279292..282774
/gene="dnaE"
/locus_tag="SeAg_B0272"
/EC_number="2.7.7.7"
/note="catalyzes DNA-template-directed extension of the
3'- end of a DNA strand by one nucleotide at a time; main
replicative polymerase"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit alpha"
/protein_id="YP_002145236.1"
/db_xref="GI:197251652"
/db_xref="GeneID:6796243"
/translation="MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDF
TNLCGLVKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLIS
KAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEA
HFPERYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVA
IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEY
FLPQFPTGDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQ
MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNA
GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
WALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYG
IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGEL
AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
GLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG
GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
IERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVML
FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL
TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
RGLIGSEQVELEFD"
misc_feature 279304..282744
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="DNA polymerase III subunit alpha; Validated;
Region: dnaE; PRK05673"
/db_xref="CDD:180192"
misc_feature 279304..280134
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="Polymerase and Histidinol Phosphatase domain of
alpha-subunit of bacterial polymerase III DnaE1; Region:
PHP_PolIIIA_DnaE1; cd07433"
/db_xref="CDD:213988"
misc_feature order(279319..279321,279325..279327,279346..279348,
279421..279423,279496..279498,279892..279894,
279898..279900)
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="putative active site [active]"
/db_xref="CDD:213988"
misc_feature order(279463..279465,279475..279483,280093..280095)
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="putative PHP Thumb interface [polypeptide binding];
other site"
/db_xref="CDD:213988"
misc_feature 282274..282531
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="DnaE_OBF: A subfamily of OB folds corresponding to
the C-terminal OB-fold nucleic acid binding domain of
Thermus aquaticus and Escherichia coli type C replicative
DNA polymerase III alpha subunit (DnaE). The DNA
polymerase holoenzyme of E. coli contains...; Region:
DnaE_OBF; cd04485"
/db_xref="CDD:72957"
misc_feature order(282274..282276,282430..282432,282436..282438,
282442..282444,282502..282504)
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="generic binding surface II; other site"
/db_xref="CDD:72957"
misc_feature order(282289..282297,282337..282348,282352..282354,
282370..282378,282382..282384,282427..282429,
282448..282456,282481..282489)
/gene="dnaE"
/locus_tag="SeAg_B0272"
/note="generic binding surface I; other site"
/db_xref="CDD:72957"
gene 282787..283746
/gene="accA"
/locus_tag="SeAg_B0273"
/db_xref="GeneID:6796383"
CDS 282787..283746
/gene="accA"
/locus_tag="SeAg_B0273"
/EC_number="6.4.1.2"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer composed of two alpha (AccA)
and two beta (AccD) subunits; one of the two catalytic
subunits that can form the acetyl CoA carboxylase enzyme
together with a carrier protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyltransferase
subunit alpha"
/protein_id="YP_002145237.1"
/db_xref="GI:197251467"
/db_xref="GeneID:6796383"
/translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
EKSVELTRKIFADLGAWQVAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
GGIARLEGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITF
IDTPGAYPGVGAEERGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVN
MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
RNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA"
misc_feature 282787..283740
/gene="accA"
/locus_tag="SeAg_B0273"
/note="acetyl-CoA carboxylase carboxyltransferase subunit
alpha; Validated; Region: PRK05724"
/db_xref="CDD:180223"
misc_feature 282787..283740
/gene="accA"
/locus_tag="SeAg_B0273"
/note="acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional; Region: accA; CHL00198"
/db_xref="CDD:164574"
gene 283926..285689
/locus_tag="SeAg_B0274"
/db_xref="GeneID:6792477"
CDS 283926..285689
/locus_tag="SeAg_B0274"
/note="identified by match to protein family HMM PF00182;
match to protein family HMM PF00801"
/codon_start=1
/transl_table=11
/product="endochitinase"
/protein_id="YP_002145238.1"
/db_xref="GI:197250206"
/db_xref="GeneID:6792477"
/translation="MGLQKTLALSAVAAGIMLSLSGAQAAPLLSSSEPMTINASDLAA
KEKALTDFPLMEAVKSSIQTLDNSAVEQIEPGRAANPANVKRVESILKEADWDYLFPM
RAPEYTYSNFLKAIGKFPAVCGTYTDGRDSDAICRKTLATMFAHFAQETGGHESWRDI
PEWRQALVYLREVGWTEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQL
SYNYNYGPFSDAMYGDVRPLLDKPELVADTWMNLASAVFFFVYPQPPKPSMLHVIDGT
WQPNDRDKANGLVSGFGVTIQIINGGVECGGADENAQSLNRIAYYKEFANYLKVPVPA
DEVLGCKKMKQFDEGGAGALPIYWEQDWGWSADTADGKTYSCQLVGYQTPYTAFKEGD
YTKCVQHYFNVNVVDDNGTTEPDVTPTPAPVTDENVAPVARIAGPVGAVEAGSPVSLS
AEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNAPDVTQNTQYVVNLTVSDGTLSS
TAVYTLNVKAKAAAADDEDKTTSYPAWSSSQKWNPGDIVNSNGALYQCKPFPEGSWCN
VAPAYYEPGVGIAWADAWNAL"
misc_feature 283995..284600
/locus_tag="SeAg_B0274"
/note="Uncharacterized protein contain chitin-binding
domain type 3 [General function prediction only]; Region:
COG3979"
/db_xref="CDD:33759"
misc_feature 284172..284945
/locus_tag="SeAg_B0274"
/note="Glycoside hydrolase family 19 chitinase domain.
Chitinases are enzymes that catalyze the hydrolysis of the
beta-1,4-N-acetyl-D-glucosamine linkages in chitin
polymers. Family 19 chitinases are found primarily in
plants (classes I, III, and IV), but some...; Region:
chitinase_glyco_hydro_19; cd00325"
/db_xref="CDD:29557"
misc_feature order(284373..284375,284439..284441,284574..284576,
284589..284594,284823..284825,284862..284864)
/locus_tag="SeAg_B0274"
/note="putative sugar binding site [chemical binding];
other site"
/db_xref="CDD:29557"
misc_feature order(284373..284375,284439..284441,284580..284582)
/locus_tag="SeAg_B0274"
/note="catalytic residues [active]"
/db_xref="CDD:29557"
misc_feature 285225..285455
/locus_tag="SeAg_B0274"
/note="PKD domain; Region: PKD; pfam00801"
/db_xref="CDD:201450"
gene 285765..287906
/locus_tag="SeAg_B0275"
/db_xref="GeneID:6796171"
CDS 285765..287906
/locus_tag="SeAg_B0275"
/EC_number="4.1.1.18"
/note="identified by match to protein family HMM PF01276;
match to protein family HMM PF03709; match to protein
family HMM PF03711"
/codon_start=1
/transl_table=11
/product="lysine decarboxylase, constitutive"
/protein_id="YP_002145239.1"
/db_xref="GI:197248168"
/db_xref="GeneID:6796171"
/translation="MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLK
FIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWF
FEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK
SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTN
GTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIP
KREFTRDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWV
PYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA
FMMHTSTSPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWF
FDIWQPEEVDEAECWPVTPGETWHGFTDADDDHMFLDPVKVTILTPGMDEQGNMSEEG
IPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRV
KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAW
QRQIKGEVETVALDQLPGRVSANMLLPYPPGVPLLMPGERITQQSRAVLDFLLMLCSI
GQHYPGFETDIHGAKRNEDGVYQVRVLKHAC"
misc_feature 285765..287903
/locus_tag="SeAg_B0275"
/note="lysine decarboxylase LdcC; Provisional; Region:
PRK15399"
/db_xref="CDD:185297"
misc_feature 285804..286136
/locus_tag="SeAg_B0275"
/note="Orn/Lys/Arg decarboxylase, N-terminal domain;
Region: OKR_DC_1_N; pfam03709"
/db_xref="CDD:146376"
misc_feature 286155..287087
/locus_tag="SeAg_B0275"
/note="Ornithine decarboxylase family. This family belongs
to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine...; Region:
Orn_deC_like; cd00615"
/db_xref="CDD:99739"
misc_feature order(286299..286301,286314..286316,286338..286340,
286413..286421,286425..286430,286437..286439,
286449..286457,286461..286466,286497..286502,
286860..286865,286872..286886,286935..286940,
286944..286952,286956..286958,286977..286979,
286986..286988,286995..286997,287034..287039)
/locus_tag="SeAg_B0275"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99739"
misc_feature order(286419..286427,286497..286499,286503..286505,
286674..286676,286752..286754,286758..286763,
286854..286856,286860..286865)
/locus_tag="SeAg_B0275"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99739"
misc_feature 286863..286865
/locus_tag="SeAg_B0275"
/note="catalytic residue [active]"
/db_xref="CDD:99739"
misc_feature 287472..287876
/locus_tag="SeAg_B0275"
/note="Orn/Lys/Arg decarboxylase, C-terminal domain;
Region: OKR_DC_1_C; pfam03711"
/db_xref="CDD:112521"
gene 287962..288351
/locus_tag="SeAg_B0276"
/db_xref="GeneID:6793108"
CDS 287962..288351
/locus_tag="SeAg_B0276"
/note="identified by match to protein family HMM PF00903"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145240.1"
/db_xref="GI:197251017"
/db_xref="GeneID:6793108"
/translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFDLLSEVWREERDSW
KGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVENVENAVAHLEKHQVKCEP
IRIDPYTGKRFTFFNDPDGLPLELYEQ"
misc_feature 287971..288345
/locus_tag="SeAg_B0276"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_1; cd08352"
/db_xref="CDD:211358"
misc_feature 287977..288339
/locus_tag="SeAg_B0276"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(287986..287988,288193..288195,288334..288336)
/locus_tag="SeAg_B0276"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:211358"
gene 288414..289706
/gene="tilS"
/locus_tag="SeAg_B0277"
/db_xref="GeneID:6793586"
CDS 288414..289706
/gene="tilS"
/locus_tag="SeAg_B0277"
/EC_number="6.3.4.-"
/note="Ligates lysine onto the cytidine present at
position 34 of the AUA codon-specific tRNA(Ile) that
contains the anticodon CAU; ATP-dependent; responsible for
modifying the wobble-base of the CAU anticodon of tRNAIle
such that it exhibits proper recognition of the AUA codon
rather than the AUG codon and is in turn properly
recognized by isoleucyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthetase"
/protein_id="YP_002145241.1"
/db_xref="GI:197249380"
/db_xref="GeneID:6793586"
/translation="MTTLTLNTSLLSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVT
LRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF
AQTLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSPFAGTLLLRPLLRET
RKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPLLQQRWPHFPAAVARSATLCA
EQERLLDELLASDLTDCITTEGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDAL
ERIWQEVALARDDASPCLRFGDREIRRYQSQLWWIKSVAGQHETTVAWPVWQTPLALP
AGLGTVQLVPGGELRRPREEESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRR
DTTPLLFYGETLIAAAGVFVTREGAAEDKEGVSLVWHA"
misc_feature 288453..289703
/gene="tilS"
/locus_tag="SeAg_B0277"
/note="tRNA(Ile)-lysidine synthetase; Provisional; Region:
tilS; PRK10660"
/db_xref="CDD:182626"
misc_feature 288456..288983
/gene="tilS"
/locus_tag="SeAg_B0277"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature order(288468..288476,288480..288491,288558..288560,
288564..288566)
/gene="tilS"
/locus_tag="SeAg_B0277"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
misc_feature 289137..289343
/gene="tilS"
/locus_tag="SeAg_B0277"
/note="TilS substrate binding domain; Region: TilS;
pfam09179"
/db_xref="CDD:204159"
misc_feature 289482..289697
/gene="tilS"
/locus_tag="SeAg_B0277"
/note="TilS substrate C-terminal domain; Region: TilS_C;
pfam11734"
/db_xref="CDD:204723"
gene complement(289790..289984)
/gene="rof"
/locus_tag="SeAg_B0278"
/db_xref="GeneID:6795387"
CDS complement(289790..289984)
/gene="rof"
/locus_tag="SeAg_B0278"
/note="identified by match to protein family HMM PF07073"
/codon_start=1
/transl_table=11
/product="rof protein"
/protein_id="YP_002145242.1"
/db_xref="GI:197248247"
/db_xref="GeneID:6795387"
/translation="MHHLILTLTLKDGEVLQAKANDLILRKNVEYLLAEVSGESCELR
LDKIASFSHPEIGTVVVSES"
misc_feature complement(289793..>289984)
/gene="rof"
/locus_tag="SeAg_B0278"
/note="Modulator of Rho-dependent transcription
termination (ROF); Region: ROF; cl09210"
/db_xref="CDD:186849"
gene complement(290037..290237)
/locus_tag="SeAg_B0279"
/db_xref="GeneID:6796534"
CDS complement(290037..290237)
/locus_tag="SeAg_B0279"
/note="identified by match to protein family HMM PF06786"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145243.1"
/db_xref="GI:197248965"
/db_xref="GeneID:6796534"
/translation="MEKYCELVRKRYAEIASGDLGYVPDALGCVLKVLNEVAADSALS
ESVREKAAYAAANLLVSDYVNE"
misc_feature complement(290040..290237)
/locus_tag="SeAg_B0279"
/note="hypothetical protein; Provisional; Region:
PRK04964"
/db_xref="CDD:179901"
gene 290435..290980
/locus_tag="SeAg_B0280"
/db_xref="GeneID:6792655"
CDS 290435..290980
/locus_tag="SeAg_B0280"
/note="identified by match to protein family HMM PF07152"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145244.1"
/db_xref="GI:197249612"
/db_xref="GeneID:6792655"
/translation="MALKATIYKAVVNVADLDRNRFLDAALTLARHPSETQERMMLRL
LAWIKYADERLQFTRGLSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQASDV
ALFAYNSRAAQIWWQQHQSKCAQFANLSVWYLDDGQLAQLSEFADRTMTLQATIQDGA
IWLSDARNNLEIQLTAWQQPS"
misc_feature 290435..290977
/locus_tag="SeAg_B0280"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4681"
/db_xref="CDD:227026"
gene 290977..291399
/locus_tag="SeAg_B0281"
/db_xref="GeneID:6796303"
CDS 290977..291399
/locus_tag="SeAg_B0281"
/note="identified by match to protein family HMM PF00472"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase domain-containing
protein"
/protein_id="YP_002145245.1"
/db_xref="GI:197251225"
/db_xref="GeneID:6796303"
/translation="MIAISRTVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIR
ASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQ
KSRRATRPTRASKERRLSSKAQKSSVKALRGKVRRPLD"
misc_feature 290977..291384
/locus_tag="SeAg_B0281"
/note="hypothetical protein; Provisional; Region:
PRK09256"
/db_xref="CDD:181730"
misc_feature <290986..291396
/locus_tag="SeAg_B0281"
/note="Protein chain release factor B [Translation,
ribosomal structure and biogenesis]; Region: PrfB;
COG1186"
/db_xref="CDD:224107"
gene 291431..292132
/locus_tag="SeAg_B0282"
/db_xref="GeneID:6793389"
CDS 291431..292132
/locus_tag="SeAg_B0282"
/note="identified by match to protein family HMM PF04170"
/codon_start=1
/transl_table=11
/product="copper homeostasis and adhesion lipoprotein"
/protein_id="YP_002145246.1"
/db_xref="GI:197250768"
/db_xref="GeneID:6793389"
/translation="MVRTAILSVAAACTLFALIGCNNRAEVDALQPAQAAELKPMQQS
WRGVLPCADCEGIETSLFLEKDGTWVMNERYQGVREEPSSFASYGTWARTADKLVLTD
SNGEKSYYRAKGNALEMLDREGNPVASQLNYTLVPVTASLPVTPMPLRGMYVYRADAA
TFTDCATGKRLPVASNAQLERGYLTAKGEAEKPVLLTVEGHFVFAANPDTGEPVKMLI
ADKNAKFAPGKDCTH"
misc_feature 291431..292129
/locus_tag="SeAg_B0282"
/note="lipoprotein involved with copper homeostasis and
adhesion; Provisional; Region: PRK10523"
/db_xref="CDD:182516"
misc_feature 291431..292111
/locus_tag="SeAg_B0282"
/note="NlpE N-terminal domain; Region: NlpE; cl01138"
/db_xref="CDD:214108"
gene complement(292206..293924)
/gene="proS"
/locus_tag="SeAg_B0283"
/db_xref="GeneID:6792909"
CDS complement(292206..293924)
/gene="proS"
/locus_tag="SeAg_B0283"
/EC_number="6.1.1.15"
/note="catalyzes the formation of prolyl-tRNA(Pro) from
proline and tRNA(Pro)"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_002145247.1"
/db_xref="GI:197250542"
/db_xref="GeneID:6792909"
/translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
TGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
PFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDA
YSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGE
DDIVFSDVSDYAANIELAEAIAPQTPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
TVKTLLVKAVKDSKSPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVINAG
PGSLGPVNMPIPVIIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPVVADIRNVVA
GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
VVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
MDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYL
VKAIKG"
misc_feature complement(292212..293924)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK09194"
/db_xref="CDD:181689"
misc_feature complement(<293280..293876)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_prok; cd00779"
/db_xref="CDD:73229"
misc_feature complement(order(293463..293465,293514..293516,
293574..293576,293628..293642,293646..293648,
293706..293711,293715..293723,293772..293774,
293793..293804,293823..293828))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73229"
misc_feature complement(293706..293729)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="motif 1; other site"
/db_xref="CDD:73229"
misc_feature complement(order(293448..293450,293454..293456,
293460..293462,293469..293477,293499..293501,
293505..293507,293592..293594,293598..293600))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="active site"
/db_xref="CDD:73229"
misc_feature complement(293499..293510)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="motif 2; other site"
/db_xref="CDD:73229"
misc_feature complement(292764..293246)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:88585"
misc_feature complement(order(292839..292841,292914..292919,
293088..293090))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="putative deacylase active site [active]"
/db_xref="CDD:88585"
misc_feature complement(292551..>292718)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(order(292575..292577,292584..292589,
292593..292598,292686..292688,292698..292703))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(order(292575..292577,292584..292586))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="motif 3; other site"
/db_xref="CDD:29813"
misc_feature complement(292224..292508)
/gene="proS"
/locus_tag="SeAg_B0283"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:29801"
misc_feature complement(order(292284..292286,292290..292292,
292320..292322,292344..292346,292362..292364,
292479..292484))
/gene="proS"
/locus_tag="SeAg_B0283"
/note="anticodon binding site; other site"
/db_xref="CDD:29801"
gene complement(294035..294742)
/locus_tag="SeAg_B0284"
/db_xref="GeneID:6794456"
CDS complement(294035..294742)
/locus_tag="SeAg_B0284"
/note="identified by match to protein family HMM PF01980;
match to protein family HMM TIGR00104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145248.1"
/db_xref="GI:197248890"
/db_xref="GeneID:6794456"
/translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQ
ADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
SLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE
MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNV
RWRVVNTGFEVFALEPR"
misc_feature complement(294329..294718)
/locus_tag="SeAg_B0284"
/note="Escherichia coli YaeB and related proteins; Region:
UPF0066; cd09281"
/db_xref="CDD:187753"
misc_feature complement(order(294329..294346,294443..294445,
294449..294451,294455..294457,294467..294484,
294557..294559,294569..294571,294590..294592,
294596..294604,294716..294718))
/locus_tag="SeAg_B0284"
/note="homodimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:187753"
misc_feature complement(order(294353..294355,294368..294370,
294437..294439,294443..294445,294467..294469,
294551..294556,294560..294562))
/locus_tag="SeAg_B0284"
/note="cofactor binding site; other site"
/db_xref="CDD:187753"
gene complement(294739..295143)
/gene="rcsF"
/locus_tag="SeAg_B0285"
/db_xref="GeneID:6795044"
CDS complement(294739..295143)
/gene="rcsF"
/locus_tag="SeAg_B0285"
/codon_start=1
/transl_table=11
/product="outer membrane lipoprotein"
/protein_id="YP_002145249.1"
/db_xref="GI:197251683"
/db_xref="GeneID:6795044"
/translation="MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAP
RAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKAN
AVLLHSCEITSGTPGCYRQAVCIGSALNISAK"
misc_feature complement(294745..295143)
/gene="rcsF"
/locus_tag="SeAg_B0285"
/note="outer membrane lipoprotein; Reviewed; Region: rcsF;
PRK10781"
/db_xref="CDD:182725"
gene complement(295262..296077)
/gene="metQ"
/locus_tag="SeAg_B0286"
/db_xref="GeneID:6795498"
CDS complement(295262..296077)
/gene="metQ"
/locus_tag="SeAg_B0286"
/note="identified by match to protein family HMM PF03180;
match to protein family HMM TIGR00363"
/codon_start=1
/transl_table=11
/product="DL-methionine transporter substrate-binding
subunit"
/protein_id="YP_002145250.1"
/db_xref="GI:197249920"
/db_xref="GeneID:6795498"
/translation="MAFKFKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQ
VAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYK
LVSVGKTFVYPIAGYSKKIKSLDELKDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
VGLLPTSLDIVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
misc_feature complement(295265..296077)
/gene="metQ"
/locus_tag="SeAg_B0286"
/note="DL-methionine transporter substrate-binding
subunit; Provisional; Region: metQ; PRK11063"
/db_xref="CDD:182939"
misc_feature complement(295265..296038)
/gene="metQ"
/locus_tag="SeAg_B0286"
/note="lipoprotein, YaeC family; Region: TIGR00363"
/db_xref="CDD:129460"
gene complement(296116..296769)
/gene="metI"
/locus_tag="SeAg_B0287"
/db_xref="GeneID:6792583"
CDS complement(296116..296769)
/gene="metI"
/locus_tag="SeAg_B0287"
/note="part of the MetNIQ methionine uptake system"
/codon_start=1
/transl_table=11
/product="DL-methionine transporter permease"
/protein_id="YP_002145251.1"
/db_xref="GI:197248391"
/db_xref="GeneID:6792583"
/translation="MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
QIMENARLYRSLSAVVNIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGAAP
FIARMVENALLEIPAGLIEASRAMGATPLQIVRKILLPEALPGLVNAATITLITLVGY
SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRAVTHK"
misc_feature complement(<296299..296730)
/gene="metI"
/locus_tag="SeAg_B0287"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(296314..296316,296323..296328,
296368..296370,296419..296421,296428..296433,
296443..296445,296449..296454,296461..296463,
296467..296469,296473..296478,296542..296544,
296548..296553,296560..296589,296593..296604,
296653..296655,296668..296673,296680..296685))
/gene="metI"
/locus_tag="SeAg_B0287"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(296542..296586)
/gene="metI"
/locus_tag="SeAg_B0287"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(296347..296349,296359..296364,
296380..296418))
/gene="metI"
/locus_tag="SeAg_B0287"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(296762..297793)
/gene="metN"
/locus_tag="SeAg_B0288"
/db_xref="GeneID:6796437"
CDS complement(296762..297793)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="part of the metNIQ transport system for methionine"
/codon_start=1
/transl_table=11
/product="DL-methionine transporter ATP-binding subunit"
/protein_id="YP_002145252.1"
/db_xref="GI:197251181"
/db_xref="GeneID:6796437"
/translation="MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK
STLIRCVNLLERPTEGSVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
VALPLELDNTPKEEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPK
VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQARLKASPETDSVPMLRMEFTGQ
SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQEETQAAIAWLQDHH
VKVEVLGYV"
misc_feature complement(296765..297793)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="DL-methionine transporter ATP-binding subunit;
Provisional; Region: metN; PRK11153"
/db_xref="CDD:236863"
misc_feature complement(297095..297793)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="ATP-binding cassette domain of methionine
transporter; Region: ABC_MetN_methionine_transporter;
cd03258"
/db_xref="CDD:213225"
misc_feature complement(297659..297682)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213225"
misc_feature complement(order(297197..297199,297296..297301,
297527..297529,297656..297664,297668..297673))
/gene="metN"
/locus_tag="SeAg_B0288"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213225"
misc_feature complement(297527..297538)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="Q-loop/lid; other site"
/db_xref="CDD:213225"
misc_feature complement(297344..297373)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213225"
misc_feature complement(297296..297313)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="Walker B; other site"
/db_xref="CDD:213225"
misc_feature complement(297278..297289)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="D-loop; other site"
/db_xref="CDD:213225"
misc_feature complement(297191..297211)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="H-loop/switch region; other site"
/db_xref="CDD:213225"
misc_feature complement(296774..296995)
/gene="metN"
/locus_tag="SeAg_B0288"
/note="This domain is found at the C-terminus of ABC
transporter proteins involved in D-methionine transport as
well as a number of ferredoxin-like proteins; Region: NIL;
smart00930"
/db_xref="CDD:197998"
gene 297983..298549
/locus_tag="SeAg_B0289"
/db_xref="GeneID:6793507"
CDS 297983..298549
/locus_tag="SeAg_B0289"
/note="'Converts the D-glycero-beta-D-manno-heptose
1,7-bisphosphate intermediate into
D-glycero-beta-D-manno-heptose 1-phosphate'"
/codon_start=1
/transl_table=11
/product="D,D-heptose 1,7-bisphosphate phosphatase"
/protein_id="YP_002145253.1"
/db_xref="GI:197247442"
/db_xref="GeneID:6793507"
/translation="MAKSVPAIFLDRDGTINVDHGYVHEIDAFEFIDGVIDAMRELKK
MGYALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSIEE
FRQVCDCRKPHPGMLISARDFLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
VTAEAENAADWVLNSLADLPSAIKKQQK"
misc_feature 297989..298546
/locus_tag="SeAg_B0289"
/note="D,D-heptose 1,7-bisphosphate phosphatase;
Validated; Region: PRK08942"
/db_xref="CDD:181588"
misc_feature 298001..298447
/locus_tag="SeAg_B0289"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(298013..298021,298139..298144)
/locus_tag="SeAg_B0289"
/note="active site"
/db_xref="CDD:119389"
misc_feature 298013..298030
/locus_tag="SeAg_B0289"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 298139..298141
/locus_tag="SeAg_B0289"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(298620..298742)
/locus_tag="SeAg_B0290"
/note="conserved hypothetical protein; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6796104"
gene 298922..300453
/gene="rrs"
/locus_tag="SeAg_B0291"
/db_xref="GeneID:6796858"
rRNA 298922..300453
/gene="rrs"
/locus_tag="SeAg_B0291"
/product="16S ribosomal RNA"
/db_xref="GeneID:6796858"
gene 300524..300600
/locus_tag="SeAg_B0292"
/db_xref="GeneID:6794330"
tRNA 300524..300600
/locus_tag="SeAg_B0292"
/product="tRNA-Ile"
/db_xref="GeneID:6794330"
gene 300709..300786
/locus_tag="SeAg_B0293"
/db_xref="GeneID:6794987"
tRNA 300709..300786
/locus_tag="SeAg_B0293"
/product="tRNA-Ala"
/db_xref="GeneID:6794987"
gene 300794..300910
/locus_tag="SeAg_B0294"
/db_xref="GeneID:6794946"
CDS 300794..300910
/locus_tag="SeAg_B0294"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145254.1"
/db_xref="GI:197249806"
/db_xref="GeneID:6794946"
/translation="MFTKKYFRVYLKGFTAKFCSLKIWIKLKIETLNNESCS"
gene 300968..303956
/gene="rrl"
/locus_tag="SeAg_B0295"
/db_xref="GeneID:6792997"
rRNA 300968..303956
/gene="rrl"
/locus_tag="SeAg_B0295"
/product="23S ribosomal RNA"
/db_xref="GeneID:6792997"
gene 304153..304268
/gene="rrf"
/locus_tag="SeAg_B0297"
/db_xref="GeneID:6794342"
rRNA 304153..304268
/gene="rrf"
/locus_tag="SeAg_B0297"
/product="5S ribosomal RNA"
/db_xref="GeneID:6794342"
gene 304459..304537
/locus_tag="SeAg_B0298"
/db_xref="GeneID:6794333"
tRNA 304459..304537
/locus_tag="SeAg_B0298"
/product="tRNA-Asp"
/db_xref="GeneID:6794333"
gene 304680..305504
/gene="dkgB"
/locus_tag="SeAg_B0299"
/db_xref="GeneID:6794951"
CDS 304680..305504
/gene="dkgB"
/locus_tag="SeAg_B0299"
/EC_number="1.1.1.274"
/note="'catalyzes the reduction of 2,5-diketo-D-gluconic
acid to 2-keto-L-gulonic acid'"
/codon_start=1
/transl_table=11
/product="2,5-diketo-D-gluconate reductase B"
/protein_id="YP_002145255.1"
/db_xref="GI:197249948"
/db_xref="GeneID:6794951"
/translation="MIKKRNSMTIPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQ
IYDNEAAVGQAIAESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTL
IHWPSPGDAVPVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADHIATNQI
ELSPYLQNRKVVDWAKAHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWA
MGEGYSVIPSSTRRENLASNLLAQDLHLDAEDKNAIAALDCNDRLVSPEGLAPEWD"
misc_feature 304692..305450
/gene="dkgB"
/locus_tag="SeAg_B0299"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature 304713..305453
/gene="dkgB"
/locus_tag="SeAg_B0299"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:201112"
misc_feature order(304725..304733,304800..304802,304815..304817,
304890..304892,304989..304994,305085..305090,
305154..305156,305232..305249,305310..305312,
305355..305366,305379..305381,305388..305393)
/gene="dkgB"
/locus_tag="SeAg_B0299"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(304800..304802,304815..304817,304890..304892,
304989..304991)
/gene="dkgB"
/locus_tag="SeAg_B0299"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(305526..306440)
/locus_tag="SeAg_B0300"
/db_xref="GeneID:6796889"
CDS complement(305526..306440)
/locus_tag="SeAg_B0300"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR substrate binding domain-containing
protein"
/protein_id="YP_002145256.1"
/db_xref="GI:197251911"
/db_xref="GeneID:6796889"
/translation="MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
LGVSLLNRTTRQLSLTEEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATP
VMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLF
TSYRKIIASPDYIARFGKPETVEELKRHLCLGFSEPVSLNTWPIACSDGQLHEIKCGI
SSNSGETLKQLCLNGNGIACLSDYMIDKEIAWGELVELLADKRLPVEMPFSAVYYSDR
AVSTRIRAFIDFLSEYIRTAPAGAVKEG"
misc_feature complement(305547..306425)
/locus_tag="SeAg_B0300"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(306249..306419)
/locus_tag="SeAg_B0300"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(305574..306170)
/locus_tag="SeAg_B0300"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA, contains the
type 2 periplasmic binding domain; Region: PBP2_CrgA;
cd08478"
/db_xref="CDD:176167"
misc_feature complement(order(305637..305639,305721..305723,
305772..305774,305955..305957,305961..305963,
306003..306005,306120..306122,306132..306134))
/locus_tag="SeAg_B0300"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176167"
misc_feature complement(order(305745..305747,305754..305759,
305778..305792,305874..305876,306057..306077,
306081..306083,306093..306095,306102..306107,
306111..306116,306126..306131))
/locus_tag="SeAg_B0300"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176167"
gene 306545..307720
/locus_tag="SeAg_B0301"
/db_xref="GeneID:6794304"
CDS 306545..307720
/locus_tag="SeAg_B0301"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="inner membrane transport protein YdhP"
/protein_id="YP_002145257.1"
/db_xref="GI:197249125"
/db_xref="GeneID:6794304"
/translation="MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLV
SIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTG
LAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFT
AFTFLAPMMQDLAGFSPAAVSWILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAAL
FVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLN
IAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE"
misc_feature 306545..307699
/locus_tag="SeAg_B0301"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature 306557..307672
/locus_tag="SeAg_B0301"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(306599..306601,306608..306616,306620..306625,
306674..306676,306683..306688,306695..306697,
306707..306712,306716..306721,306857..306862,
306869..306874,306881..306886,306893..306895,
306929..306934,306941..306946,306962..306964,
307181..307183,307190..307195,307202..307207,
307214..307216,307256..307258,307268..307270,
307280..307282,307289..307291,307301..307303,
307445..307447,307454..307459,307466..307468,
307478..307483,307490..307492,307532..307537,
307544..307549,307556..307561,307568..307570)
/locus_tag="SeAg_B0301"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 307852..308652
/locus_tag="SeAg_B0302"
/db_xref="GeneID:6794256"
CDS 307852..308652
/locus_tag="SeAg_B0302"
/note="identified by match to protein family HMM PF03372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145258.1"
/db_xref="GI:197248605"
/db_xref="GeneID:6794256"
/translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERI
RILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTD
DQRRRAFGRPLDFVFYRGLNVNEASVLVTRASDHNPLLVEFSPGKPEQ"
misc_feature 307852..308640
/locus_tag="SeAg_B0302"
/note="hypothetical protein; Provisional; Region:
PRK05421"
/db_xref="CDD:180068"
misc_feature order(307999..308001,308080..308082,308317..308319,
308419..308421,308425..308427)
/locus_tag="SeAg_B0302"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature 308080..308082
/locus_tag="SeAg_B0302"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature order(308317..308319,308425..308427)
/locus_tag="SeAg_B0302"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
misc_feature order(308419..308421,308425..308427,308539..308541,
308602..308607)
/locus_tag="SeAg_B0302"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature order(308425..308427,308605..308607)
/locus_tag="SeAg_B0302"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
misc_feature 308602..308604
/locus_tag="SeAg_B0302"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
gene 308730..309500
/locus_tag="SeAg_B0303"
/db_xref="GeneID:6795818"
CDS 308730..309500
/locus_tag="SeAg_B0303"
/note="identified by match to protein family HMM PF01209;
match to protein family HMM PF08241; match to protein
family HMM PF08242"
/codon_start=1
/transl_table=11
/product="methyltransferase, UbiE/COQ5 family"
/protein_id="YP_002145259.1"
/db_xref="GI:197249338"
/db_xref="GeneID:6795818"
/translation="MTTHSHHDNVEKQFGSQANAYLHSAVHAAGRDLARLAQRLSDFS
HANVLDMGCGAGHASFVAAQHANSVVAYDLSASMLEVVAGAAEERHLSNITLRQGYAE
KLPFEDASFEVVISRYSAHHWHDVGQALHEVYRVLKPGGVLIIMDVMSPGHPVRDIWL
QTVEALRDTSHVRNYSSGEWLAMVNNAMLVTNTVITDRLSLEFRSWVTRMRTPAPLVE
AIRLYQGSAPAEVKRYFELQDDGSFSSDTIMLEAHKAV"
misc_feature 308808..309290
/locus_tag="SeAg_B0303"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 308868..309173
/locus_tag="SeAg_B0303"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(308880..308900,308946..308951,309024..309032,
309078..309080)
/locus_tag="SeAg_B0303"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(309556..310923)
/gene="mltD"
/locus_tag="SeAg_B0304"
/db_xref="GeneID:6795342"
CDS complement(309556..310923)
/gene="mltD"
/locus_tag="SeAg_B0304"
/EC_number="2.4.-.-"
/note="'catalyzes the cleavage of the beta-1,4-glycosidic
bond between N-acetylmuramic acid and N-acetylglucosamine
residues; may play a role in recycling muropeptides during
cell division and/or cell elongation; in Helicobacter
pylori MltD is a endolytic transglycosylase involved
mainly in the rearrangement of the peptidoglycan layer of
the bacterial cell wall'"
/codon_start=1
/transl_table=11
/product="membrane-bound lytic murein transglycosylase D"
/protein_id="YP_002145260.1"
/db_xref="GI:197248631"
/db_xref="GeneID:6795342"
/translation="MKAKAILLASVLLVGCQTSQNTGNVQQHAQSLSAAGQGEAGKFT
SQARWMDDGTSIAPDQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAE
PYMYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQT
RNYDARRDVVASTTAALDMMQRLNKMFDGDWLLTVAAYNSGEGRVMRAIKANKARGKP
TDFWSLSLPRETKLYVPKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEMAQ
VADMAGMSISKLKAFNAGVKGSTLGVSGPQYVMVPKKHAEQLRESLASGEIDAVQSQL
IADNTPLNSRSYKVRSGDTLSGIASRLGVSTKDLQQWNNLRGSRLKIGQSLTVGAGSS
AQRLANNSDSITYRVRKGDSLSSIARRHGVNIKDVMRWNHDTDNLQPGDQLTLFVKDN
STPDS"
misc_feature complement(309559..310923)
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="membrane-bound lytic murein transglycosylase D;
Provisional; Region: mltD; PRK10783"
/db_xref="CDD:182727"
misc_feature complement(310198..310572)
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature complement(order(310330..310332,310387..310389,
310480..310482,310540..310542))
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature complement(310540..310542)
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
misc_feature complement(309763..309894)
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(309589..309717)
/gene="mltD"
/locus_tag="SeAg_B0304"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
gene complement(310995..311750)
/gene="gloB"
/locus_tag="SeAg_B0305"
/db_xref="GeneID:6795846"
CDS complement(310995..311750)
/gene="gloB"
/locus_tag="SeAg_B0305"
/EC_number="3.1.2.6"
/note="catalyzes the hydrolysis of S-D-lactoylglutathione
to D-lactic acid and reduced glutathione; plays an
important role in cellular detoxification using
glutathione"
/codon_start=1
/transl_table=11
/product="hydroxyacylglutathione hydrolase"
/protein_id="YP_002145261.1"
/db_xref="GI:197248280"
/db_xref="GeneID:6795846"
/translation="MNLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKW
MPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKF
TLFATPGHTLGHVCYFSHPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTL
ICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLR
TEDIDLINEINKETILQQPEARFAWLRSKKDTF"
misc_feature complement(310998..311750)
/gene="gloB"
/locus_tag="SeAg_B0305"
/note="hydroxyacylglutathione hydrolase; Provisional;
Region: PRK10241"
/db_xref="CDD:182327"
misc_feature complement(311163..311735)
/gene="gloB"
/locus_tag="SeAg_B0305"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 311785..312507
/locus_tag="SeAg_B0306"
/db_xref="GeneID:6794836"
CDS 311785..312507
/locus_tag="SeAg_B0306"
/note="identified by match to protein family HMM PF08241"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_002145262.1"
/db_xref="GI:197251859"
/db_xref="GeneID:6794836"
/translation="MKPARLSQTVVAPGCWGELPWGNYYREALEQQLNPWFAKMYGFH
LLKIGNLSAEINSEACAVSHQVNVSSQGSPMQVLADPLHLPFADKSVDVCLLAHTLPW
CTDPHRLLREADRVLIDDGWLVISGFNPLSLMGLRKLVPVLRKTPPYNSRMFTLMRQL
DWLSLLNFEVLHYSRFHVLPWKKQGGRLLNTHIPALGCLQLIVARKRTIPLTLNPLRH
NKSKTPIRQTVGATRQYRKPDG"
misc_feature <311944..312162
/locus_tag="SeAg_B0306"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene complement(312504..312971)
/gene="rnhA"
/locus_tag="SeAg_B0307"
/db_xref="GeneID:6796040"
CDS complement(312504..312971)
/gene="rnhA"
/locus_tag="SeAg_B0307"
/EC_number="3.1.26.4"
/note="An endonuclease that specifically degrades the RNA
strand of RNA-DNA hybrids"
/codon_start=1
/transl_table=11
/product="ribonuclease H"
/protein_id="YP_002145263.1"
/db_xref="GI:197247626"
/db_xref="GeneID:6796040"
/translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTN
NRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVD
LWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSGYQAEA"
misc_feature complement(312549..312962)
/gene="rnhA"
/locus_tag="SeAg_B0307"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature complement(order(312558..312560,312612..312614,
312762..312764,312828..312830,312837..312845,
312933..312944))
/gene="rnhA"
/locus_tag="SeAg_B0307"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature complement(order(312570..312572,312762..312764,
312828..312830,312942..312944))
/gene="rnhA"
/locus_tag="SeAg_B0307"
/note="active site"
/db_xref="CDD:187702"
gene 313026..313766
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/db_xref="GeneID:6794724"
CDS 313026..313766
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/EC_number="2.7.7.7"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_002145264.1"
/db_xref="GI:197248793"
/db_xref="GeneID:6794724"
/translation="MTDMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINR
RLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHN
ASFDIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNS
KRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVV
FASEEELAAHESRLDLVQKKGGSCLWRA"
misc_feature 313053..313742
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature 313056..313571
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature order(313068..313079,313083..313088,313215..313220,
313227..313232,313326..313331,313335..313343,
313464..313469,313509..313511,313518..313520,
313533..313535)
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/note="active site"
/db_xref="CDD:99835"
misc_feature order(313068..313079,313083..313088,313215..313220,
313227..313232,313326..313331,313335..313340,
313464..313469,313509..313511,313518..313520,
313533..313535)
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature order(313068..313070,313074..313076,313341..313343,
313518..313520,313533..313535)
/gene="dnaQ"
/locus_tag="SeAg_B0308"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene 313899..313977
/locus_tag="SeAg_B0309"
/db_xref="GeneID:6796594"
tRNA 313899..313977
/locus_tag="SeAg_B0309"
/product="tRNA-Asp"
/db_xref="GeneID:6796594"
gene 314139..314501
/locus_tag="SeAg_B0310"
/db_xref="GeneID:6794966"
CDS 314139..314501
/locus_tag="SeAg_B0310"
/codon_start=1
/transl_table=11
/product="integrase"
/protein_id="YP_002145265.1"
/db_xref="GI:197251773"
/db_xref="GeneID:6794966"
/translation="MALTDPKIRALKSLDKPYKVIDSGGLYILVKPGGAKHWYLRYRF
GGKETRIAFGVYPAVTLAAAREKREEVRRMLAENVHPALQRVAEKVAADPSRTLQHIA
SELHQNILPGHIHCRVII"
misc_feature 314145..314405
/locus_tag="SeAg_B0310"
/note="Domain of unknown function (DUF4102); Region:
DUF4102; pfam13356"
/db_xref="CDD:205536"
gene complement(314557..314748)
/locus_tag="SeAg_B0311"
/db_xref="GeneID:6793667"
CDS complement(314557..314748)
/locus_tag="SeAg_B0311"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145266.1"
/db_xref="GI:197251106"
/db_xref="GeneID:6793667"
/translation="MLIFCDFIPLQAGADNGFMAYLLTVVTALRSNGNKTTAPRKGKG
PQGKGSLRVIVPARKGQRA"
gene complement(314876..315145)
/locus_tag="SeAg_B0312"
/db_xref="GeneID:6793759"
CDS complement(314876..315145)
/locus_tag="SeAg_B0312"
/codon_start=1
/transl_table=11
/product="DNA-binding prophage protein"
/protein_id="YP_002145267.1"
/db_xref="GI:197250743"
/db_xref="GeneID:6793759"
/translation="MKQAGGAHKTVSDRMALAERFCKRLVTELNVQIRNVRHLNARHI
EDYIRHRLAQGFGQKEALAMVAMELGHGDGRGRYVAQVYRLRGEG"
misc_feature complement(<314981..315142)
/locus_tag="SeAg_B0312"
/note="Phage integrase, N-terminal; Region: Integrase_l_N;
pfam12834"
/db_xref="CDD:193309"
misc_feature complement(314897..>315010)
/locus_tag="SeAg_B0312"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
gene 315805..316290
/locus_tag="SeAg_B0313"
/db_xref="GeneID:6793873"
CDS 315805..316290
/locus_tag="SeAg_B0313"
/codon_start=1
/transl_table=11
/product="ImpA family type VI secretion-associated
protein"
/protein_id="YP_002145268.1"
/db_xref="GI:197250115"
/db_xref="GeneID:6793873"
/translation="MSTGLRFTLEVDGLPPDVFAVVSFHLSQSYSSLFTLDISLVSQQ
LHSIEFSQILEKMAYLKIWQGNETEGSDWFVPDGLWGVNFMDACRNHDKCYATKGSDK
ITCDVNLGNDIALACGVLKSEDPRYNDIYTQCLITSAAYRVAVGTFGKGAYNDAQAGA
E"
misc_feature 315823..>316011
/locus_tag="SeAg_B0313"
/note="type VI secretion system Vgr family protein;
Region: VI_Rhs_Vgr; TIGR03361"
/db_xref="CDD:200267"
gene 316978..317262
/locus_tag="SeAg_B0314"
/note="transposase IS66; this gene contains a premature
stop which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6797135"
gene 317558..317944
/locus_tag="SeAg_B0315"
/db_xref="GeneID:6792913"
CDS 317558..317944
/locus_tag="SeAg_B0315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145269.1"
/db_xref="GI:197250136"
/db_xref="GeneID:6792913"
/translation="MITSENLDESLQETQGWLARLAAQHITPDTMRRGRLTEQVDQLW
AMWQPGPWWAQWLRGLRRTSQRSRELTGLSDEAPVVELPGVRYLPWPGWPGKTLGQGW
FWQQNSEGRYVDALLLVDRTNRGHML"
gene 317971..318357
/locus_tag="SeAg_B0316"
/db_xref="GeneID:6797159"
CDS 317971..318357
/locus_tag="SeAg_B0316"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145270.1"
/db_xref="GI:197249237"
/db_xref="GeneID:6797159"
/translation="MSACAGMFLPVFVWGGTDVNIDNPLAECVDIHPVHRQEMDNLTI
LKTTVTLKKSTGECGCFSALISYTSLLAQDVEGYGRGSAYSLQEGNISLAKMQGRYPF
SFVLSVDNQSVRDQKLALMIRCTPPL"
misc_feature 317971..318354
/locus_tag="SeAg_B0316"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4893"
/db_xref="CDD:34502"
gene 318627..318860
/locus_tag="SeAg_B0317"
/db_xref="GeneID:6795996"
CDS 318627..318860
/locus_tag="SeAg_B0317"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145271.1"
/db_xref="GI:197248744"
/db_xref="GeneID:6795996"
/translation="MHYILKKQVKYTEPDGGKDNIVNLAPKINFPIGHLIEYYLLSKR
PSDLLEYVKKIRIPGPNKYVKEIEKIFSEIQES"
gene complement(318927..319184)
/locus_tag="SeAg_B0318"
/db_xref="GeneID:6795633"
CDS complement(318927..319184)
/locus_tag="SeAg_B0318"
/note="identified by match to protein family HMM PF08845"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145272.1"
/db_xref="GI:197248183"
/db_xref="GeneID:6795633"
/translation="MNASGVSVRHINSETCITTCYSQIPSQHLKGDWQEEAGFETGRS
VTVKISQGCIVLMADGNEVQKLCEQLYQAERVVKGLKDVLV"
misc_feature complement(319017..>319124)
/locus_tag="SeAg_B0318"
/note="Toxin SymE, type I toxin-antitoxin system; Region:
SymE_toxin; pfam08845"
/db_xref="CDD:117412"
gene 319246..319365
/locus_tag="SeAg_B0319"
/db_xref="GeneID:6793123"
CDS 319246..319365
/locus_tag="SeAg_B0319"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145273.1"
/db_xref="GI:197247678"
/db_xref="GeneID:6793123"
/translation="MSEYGRDILAPRPPLPGQHRAVMSNRLPGPYFDDETGLH"
gene 319817..319957
/locus_tag="SeAg_B0320"
/note="rhs core protein with extension; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6797076"
gene 320312..320509
/locus_tag="SeAg_B0321"
/db_xref="GeneID:6792731"
CDS 320312..320509
/locus_tag="SeAg_B0321"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145274.1"
/db_xref="GI:197250282"
/db_xref="GeneID:6792731"
/translation="MRIIHCVIIAVQVLLLVCYSQYQPLMLIYYQEYQSLEGILMGHF
LREWLIQMLVIKLIVINIQKV"
gene 320628..321095
/locus_tag="SeAg_B0322"
/db_xref="GeneID:6795411"
CDS 320628..321095
/locus_tag="SeAg_B0322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145275.1"
/db_xref="GI:197248307"
/db_xref="GeneID:6795411"
/translation="MKRNRFFLSLLFMVLIVLFVILFFTWLGRENIKNDSAIREVAKE
EVDKLFSLYNEGEYAEIYDLSCDSFKNATARKDFLTVMGTKMKILGEFKGRKLQYSNV
INSKSVELYYRVDYIDYSLIEEFNYIKNDGQKICLQAMYTDDAGKHGEVIKLH"
misc_feature 320763..>320918
/locus_tag="SeAg_B0322"
/note="Protein of unknown function (DUF4019); Region:
DUF4019; pfam13211"
/db_xref="CDD:205392"
gene 321470..321691
/locus_tag="SeAg_B0323"
/note="cytoplasmic protein; this gene contains a premature
stop which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6794863"
gene 321714..321872
/locus_tag="SeAg_B0324"
/db_xref="GeneID:6792688"
CDS 321714..321872
/locus_tag="SeAg_B0324"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145276.1"
/db_xref="GI:197248240"
/db_xref="GeneID:6792688"
/translation="MCKSRRGYLFPAFYYQLLINSCSVLLRLITGISPVLFSAPEMFL
TTVLHSVY"
gene complement(321823..321936)
/locus_tag="SeAg_B0325"
/note="cytoplasmic protein; this region contains one or
more premature stops and/or frameshifts"
/pseudogene="unknown"
/db_xref="GeneID:6796527"
gene complement(322136..322276)
/locus_tag="SeAg_B0326"
/db_xref="GeneID:6794707"
CDS complement(322136..322276)
/locus_tag="SeAg_B0326"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145277.1"
/db_xref="GI:197250929"
/db_xref="GeneID:6794707"
/translation="MFTLTAKIQLEQTVNTVEPFVIPRVSLPPYPDFQLSLVASEIPA
SR"
gene 322479..322673
/locus_tag="SeAg_B0327"
/note="transposase B; this region contains one or more
premature stops and/or frameshifts"
/pseudogene="unknown"
/db_xref="GeneID:6794063"
gene 323451..323576
/locus_tag="SeAg_B0328"
/db_xref="GeneID:6792520"
CDS 323451..323576
/locus_tag="SeAg_B0328"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145278.1"
/db_xref="GI:197250194"
/db_xref="GeneID:6792520"
/translation="MVWRYVFWMCWIILIWFKKGGYSNEKHKKIDYRKCVEHDGC"
gene 323521..324018
/gene="safA"
/locus_tag="SeAg_B0328a"
/db_xref="GeneID:8811751"
CDS 323521..324018
/gene="safA"
/locus_tag="SeAg_B0328a"
/codon_start=1
/transl_table=11
/product="spore coat assembly protein SafA"
/protein_id="YP_003475886.1"
/db_xref="GI:289472798"
/db_xref="GeneID:8811751"
/translation="MKSIKKLIIASALSMMAASCYAGSFLPNTVQEKSVDINFAAPEH
LTVSLDQVPGLIAGDEPTGTAIAKLTVDSTSVKEFGARGGAGVIMDNAGIVWRIAGKN
SGNSITVGLSPKDVAKSQGRQTWNGREWITFDTNVPLYITTIGEQNISPDTYPLTLDV
VGYQA"
misc_feature 323521..324015
/gene="safA"
/locus_tag="SeAg_B0328a"
/note="Saf-pilin pilus formation protein SafA;
Provisional; Region: PRK15221"
/db_xref="CDD:185143"
gene complement(324068..324199)
/locus_tag="SeAg_B0329"
/db_xref="GeneID:6797379"
CDS complement(324068..324199)
/locus_tag="SeAg_B0329"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145279.1"
/db_xref="GI:197248201"
/db_xref="GeneID:6797379"
/translation="MAEFNCCLAAYTETIELEANKATAIKTKLIVFISKIVKEKRKI"
gene 324126..324839
/locus_tag="SeAg_B0330"
/db_xref="GeneID:6796488"
CDS 324126..324839
/locus_tag="SeAg_B0330"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="pili assembly chaperone"
/protein_id="YP_002145280.2"
/db_xref="GI:449785017"
/db_xref="GeneID:6796488"
/translation="MAVALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTP
GATLSVSNPQDYPILVQSSVKAEDKNSPAPFMVMPPLFRLEANQQSQLRIIRTGGDMP
TDRETLQWVCIKALPPENEPSDTQAKGATLDLNLSISTCDKLIFRPDAVKGTPEDVAG
NLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVE
WKIITDLGGESHPFHYVFK"
misc_feature 324126..324836
/locus_tag="SeAg_B0330"
/note="pili assembly chaperone protein SafB; Provisional;
Region: PRK15224"
/db_xref="CDD:185146"
misc_feature 324210..324581
/locus_tag="SeAg_B0330"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature 324636..324812
/locus_tag="SeAg_B0330"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene 324863..327373
/locus_tag="SeAg_B0331"
/db_xref="GeneID:6796627"
CDS 324863..327373
/locus_tag="SeAg_B0331"
/note="identified by match to protein family HMM PF00577"
/codon_start=1
/transl_table=11
/product="outer-membrane fimbrial usher protein"
/protein_id="YP_002145281.1"
/db_xref="GI:197248731"
/db_xref="GeneID:6796627"
/translation="MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFN
QGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDY
PQLWKAAKTPDECADLSAIPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDG
IPAFLMNYSARTTQTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGK
WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPV
VRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVADSSGDLHVTVWEADGSTQMF
VVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQS
ATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNF
FLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLS
LTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENITSLWFS
MPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGN
NSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA
PGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPT
EGAVVEAKFHTHIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGL
ADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR"
misc_feature 324863..327370
/locus_tag="SeAg_B0331"
/note="pilin outer membrane usher protein SafC;
Provisional; Region: PRK15223"
/db_xref="CDD:185145"
misc_feature 324935..325372
/locus_tag="SeAg_B0331"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature 325427..327109
/locus_tag="SeAg_B0331"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature 327137..327331
/locus_tag="SeAg_B0331"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene 327395..327865
/locus_tag="SeAg_B0332"
/db_xref="GeneID:6795620"
CDS 327395..327865
/locus_tag="SeAg_B0332"
/note="identified by match to protein family HMM PF05775"
/codon_start=1
/transl_table=11
/product="fimbrial structural subunit"
/protein_id="YP_002145282.1"
/db_xref="GI:197247822"
/db_xref="GeneID:6795620"
/translation="MWMKIQRVKTVIYSVSLLVAASSLMPIANAAEKLQTTLRVGTYF
RAGHVPDGMVLAQGWVTYHGSHSGFRVWSDEQKAGNTPTVLLLSGQQDPRHHIQVRLE
GEGWQPDTVSGRGAILRTAADNASFSVVVDGNQEVPADTWTLDFKACALAQEDT"
misc_feature 327395..327862
/locus_tag="SeAg_B0332"
/note="putative pilin structural protein SafD;
Provisional; Region: PRK15222"
/db_xref="CDD:185144"
gene 328273..329094
/locus_tag="SeAg_B0333"
/db_xref="GeneID:6794765"
CDS 328273..329094
/locus_tag="SeAg_B0333"
/note="identified by match to protein family HMM PF01522"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_002145283.1"
/db_xref="GI:197248294"
/db_xref="GeneID:6794765"
/translation="MSYARHLPVLMYHHVSDKPGQITLSPRTFRAQMKWLAESGWKTV
TAAEVEAFYHGARLPRKSVMLTFDGGWLDNWLQVFPVLQEFNLHAHLFLVTSLISDGP
VRIPAGELVYSHDECQMLVKQGRADEVMLRWSEVREMHLSGLVEFHSHTHTHRRWDQK
PVSRNPSDLLRVDILLSRKRMREMLGYCSQHLCWPEGWYCSDYIHVAEELGFTYLYTT
ERRMNNPVIGSQRIGRINTKERKNVGWLKRRLFYHTTPGFSSLLARHKGARRIAD"
misc_feature 328273..329073
/locus_tag="SeAg_B0333"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:31070"
misc_feature 328348..329034
/locus_tag="SeAg_B0333"
/note="Putative catalytic NodB homology domain of a
hypothetical protein Ecf1 from Escherichia coli and
similar proteins; Region: CE4_Ecf1_like_5s; cd10969"
/db_xref="CDD:213026"
misc_feature order(328474..328479,328720..328722,328732..328734,
328855..328863)
/locus_tag="SeAg_B0333"
/note="putative active site [active]"
/db_xref="CDD:213026"
misc_feature order(328477..328479,328720..328722,328732..328734)
/locus_tag="SeAg_B0333"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:213026"
gene 329577..329708
/locus_tag="SeAg_B0334"
/db_xref="GeneID:6794850"
CDS 329577..329708
/locus_tag="SeAg_B0334"
/codon_start=1
/transl_table=11
/product="TnpA protein"
/protein_id="YP_002145284.1"
/db_xref="GI:197250853"
/db_xref="GeneID:6794850"
/translation="MNDAINALQTASQKRRMPLQNGRMTMNHFIIGIWFGDNLDDHF"
gene 329911..330858
/locus_tag="SeAg_B0335"
/db_xref="GeneID:6795756"
CDS 329911..330858
/locus_tag="SeAg_B0335"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR-family transcriptional regulator SinR"
/protein_id="YP_002145285.1"
/db_xref="GI:197251913"
/db_xref="GeneID:6795756"
/translation="MMELINNRGMRDWMIFIKVAEVGNLSRAARELDISISAVSKSLS
RLENSIEVTLLRRDSHHLELTGAGQTAYASMKRITSSFQSLLDELRNPDKIIRGSIKF
SAPAIVCEFLANKWIWEFTASYPDTKIYLDSRERSDFFSKSLEFDELVFKSGIIESED
LVYRKISPLKLVLCASPKYIRKYGRISHPGDLENHIIVGLHNHGLSGPLTLFRQDESY
TISGAVNVHLSSNNLLSVLNLVLEGKGINLMTPAWLATKYLKNNELEIILPEWRVPDL
PIYLVWRHRQYYSPLFQRFLSFIEDKWNNRPQIDFLNDD"
misc_feature 329938..330813
/locus_tag="SeAg_B0335"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 329938..330117
/locus_tag="SeAg_B0335"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 330202..330807
/locus_tag="SeAg_B0335"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(330250..330255,330259..330264,330271..330273,
330283..330285,330289..330309,330589..330606,
330622..330627,330631..330636)
/locus_tag="SeAg_B0335"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 331018..331200
/locus_tag="SeAg_B0336"
/db_xref="GeneID:6794306"
CDS 331018..331200
/locus_tag="SeAg_B0336"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145286.1"
/db_xref="GI:197249672"
/db_xref="GeneID:6794306"
/translation="MGLFLGSRKLSPYQKRCSVLKNGARLHLFNDFLKAQEYSLLISS
IAPSGTHRTSYFTDSV"
gene complement(331356..331425)
/locus_tag="SeAg_B0338"
/db_xref="GeneID:6792773"
ncRNA complement(331356..331425)
/locus_tag="SeAg_B0338"
/ncRNA_class="antisense_RNA"
/product="RNA-OUT"
/db_xref="GeneID:6792773"
gene 331418..332626
/locus_tag="SeAg_B0337"
/db_xref="GeneID:6794319"
CDS 331418..332626
/locus_tag="SeAg_B0337"
/note="identified by match to protein family HMM PF01609"
/codon_start=1
/transl_table=11
/product="IS10 transposase"
/protein_id="YP_002145287.1"
/db_xref="GI:197248128"
/db_xref="GeneID:6794319"
/translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR
LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR
TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNL
FTHGYALGKL"
misc_feature 331688..332407
/locus_tag="SeAg_B0337"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:201886"
gene complement(332595..333254)
/locus_tag="SeAg_B0339"
/db_xref="GeneID:6793066"
CDS complement(332595..333254)
/locus_tag="SeAg_B0339"
/codon_start=1
/transl_table=11
/product="adhesin"
/protein_id="YP_002145288.1"
/db_xref="GI:197250348"
/db_xref="GeneID:6793066"
/translation="MKNFFAVCIIPLVVTWSATASAKEGIYITGKAGTSVVNVYGINS
TFSQDKIVNGHATLPDRTKGVFGGGVAIGYDFYDPFQLPVRLELDTTFRGETDAKGGQ
DIIAFGQPVHINVKNQVRMTTYMVNGYYDFHNSTAFTPYISAGVGLAHVKLSNNTIPV
GFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKVLRDPLIISPKRNH
V"
misc_feature complement(332640..333254)
/locus_tag="SeAg_B0339"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene complement(333279..333407)
/locus_tag="SeAg_B0340"
/db_xref="GeneID:6795479"
CDS complement(333279..333407)
/locus_tag="SeAg_B0340"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145289.1"
/db_xref="GI:197251384"
/db_xref="GeneID:6795479"
/translation="MLFKIFISFFTRLQKTQRYNRPFFGLRLCNRYITPYTVKLVF"
gene complement(333600..334007)
/locus_tag="SeAg_B0341"
/db_xref="GeneID:6794370"
CDS complement(333600..334007)
/locus_tag="SeAg_B0341"
/note="identified by match to protein family HMM PF07813"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145290.1"
/db_xref="GI:197249167"
/db_xref="GeneID:6794370"
/translation="MKNFVRTTLLAATLAGVSFGAFATAVPNPPLPAQDPIVQHLKLT
NDQITRIKKLHQQLETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIEQQ
ARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE"
misc_feature complement(333645..333890)
/locus_tag="SeAg_B0341"
/note="CpxP component of the bacterial Cpx-two-component
system and related proteins; Region: CpxP_like; cd09916"
/db_xref="CDD:197366"
misc_feature complement(order(333663..333665,333672..333674,
333681..333686,333693..333695,333705..333707,
333717..333719,333729..333731,333738..333740,
333750..333752,333756..333758,333768..333773,
333780..333782,333792..333794))
/locus_tag="SeAg_B0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:197366"
gene complement(334317..335084)
/locus_tag="SeAg_B0342"
/db_xref="GeneID:6795925"
CDS complement(334317..335084)
/locus_tag="SeAg_B0342"
/note="identified by match to protein family HMM PF00795"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145291.1"
/db_xref="GI:197249943"
/db_xref="GeneID:6795925"
/translation="MSGLKITLLQQPLVWMDGPANLRHFDRQLELVSGRDVIVLPEMF
TTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKV
HLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL
YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIA
TAEPHQATRIDADLSLVALQDYREKFPAWRDADPFTL"
misc_feature complement(334320..335084)
/locus_tag="SeAg_B0342"
/note="C-N hydrolase family amidase; Provisional; Region:
PRK10438"
/db_xref="CDD:182461"
misc_feature complement(334323..335075)
/locus_tag="SeAg_B0342"
/note="Xanthomonas campestris XC1258 and related proteins,
members of the nitrilase superfamily (putative class 13
nitrilases); Region: Xc-1258_like; cd07575"
/db_xref="CDD:143599"
misc_feature complement(order(334590..334595,334650..334655,
334659..334664,334737..334739,334752..334754,
334764..334766,334941..334943,334959..334961))
/locus_tag="SeAg_B0342"
/note="putative active site [active]"
/db_xref="CDD:143599"
misc_feature complement(order(334662..334664,334764..334766,
334959..334961))
/locus_tag="SeAg_B0342"
/note="catalytic triad [active]"
/db_xref="CDD:143599"
misc_feature complement(order(334323..334343,334347..334358,
334395..334397,334401..334406,334410..334412,
334422..334448,334452..334454,334536..334541,
334545..334553,334557..334562,334569..334574,
334632..334634,334638..334652,334659..334661,
334746..334748,334758..334763))
/locus_tag="SeAg_B0342"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:143599"
misc_feature complement(order(334323..334343,334347..334358,
334440..334448,334536..334541,334545..334553,
334557..334562,334569..334574,334632..334634,
334638..334652,334659..334661,334746..334748,
334758..334763))
/locus_tag="SeAg_B0342"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143599"
gene complement(335193..337637)
/gene="fadE"
/locus_tag="SeAg_B0343"
/note="acyl-coenzyme A dehydrogenase; this gene contains a
frame shift which may be the result of sequencing error;
identified by match to protein family HMM PF00441; match
to protein family HMM PF09317"
/pseudogene="unknown"
/db_xref="GeneID:6792606"
gene 337877..338455
/gene="gmhA"
/locus_tag="SeAg_B0344"
/db_xref="GeneID:6793068"
CDS 337877..338455
/gene="gmhA"
/locus_tag="SeAg_B0344"
/EC_number="5.3.1.-"
/note="catalyzes the isomerization of sedoheptulose
7-phosphate to D-glycero-D-manno-heptose 7-phosphate"
/codon_start=1
/transl_table=11
/product="phosphoheptose isomerase"
/protein_id="YP_002145292.1"
/db_xref="GI:197248959"
/db_xref="GeneID:6793068"
/translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYIFS
RYVEAVGREGDVLLGISTSGNSGNVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
misc_feature 337904..338440
/gene="gmhA"
/locus_tag="SeAg_B0344"
/note="Phosphoheptose isomerase is a member of the SIS
(Sugar ISomerase) superfamily. Phosphoheptose isomerase
catalyzes the isomerization of sedoheptulose 7-phosphate
into D-glycero-D-mannoheptose 7-phosphate. This is the
first step of the biosynthesis of...; Region: SIS_GmhA;
cd05006"
/db_xref="CDD:88403"
misc_feature order(337913..337915,337925..337927,337967..337969,
337976..337978,338036..338038,338054..338059,
338390..338395,338405..338407,338414..338416,
338426..338428,338438..338440)
/gene="gmhA"
/locus_tag="SeAg_B0344"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88403"
misc_feature order(338030..338038,338231..338239,338246..338248,
338375..338377,338390..338392)
/gene="gmhA"
/locus_tag="SeAg_B0344"
/note="active site"
/db_xref="CDD:88403"
gene 338668..339435
/locus_tag="SeAg_B0345"
/db_xref="GeneID:6792649"
CDS 338668..339435
/locus_tag="SeAg_B0345"
/note="identified by match to protein family HMM PF00310"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase, class II"
/protein_id="YP_002145293.1"
/db_xref="GI:197251692"
/db_xref="GeneID:6792649"
/translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
GCRTFKDPQPSYHSPIAKLVQNYPIKSCSVIAHIRQANRGEVALENTHPFTRELWGRN
WTYAHNGQLNGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMTAVFKYIA
TLATVLREKGVFNMLLSDGRYVMAFCSTHLHWITRRAPFGVATLVDQDMEIDFSSQTT
PNDVVTVIATQPLTGNETWQKIMPGEWALFCLGERII"
misc_feature 338668..339429
/locus_tag="SeAg_B0345"
/note="Predicted glutamine amidotransferase [General
function prediction only]; Region: COG0121"
/db_xref="CDD:223199"
misc_feature 338668..339420
/locus_tag="SeAg_B0345"
/note="Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found in
prokaryotes, eukaryotes and archaea. YafJ has a conserved
structural fold similar to those of other class II...;
Region: YafJ; cd01908"
/db_xref="CDD:238889"
misc_feature order(338671..338673,338902..338904,338989..338997,
339052..339054)
/locus_tag="SeAg_B0345"
/note="putative active site [active]"
/db_xref="CDD:238889"
misc_feature order(338806..338808,338815..338820,338953..338955,
339025..339030,339091..339093)
/locus_tag="SeAg_B0345"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:238889"
gene complement(339406..340146)
/locus_tag="SeAg_B0346"
/db_xref="GeneID:6795508"
CDS complement(339406..340146)
/locus_tag="SeAg_B0346"
/note="identified by match to protein family HMM PF06104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145294.1"
/db_xref="GI:197251197"
/db_xref="GeneID:6795508"
/translation="MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPV
YIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQ
LKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA
ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVD
GRYVVSKPLSHEVVQPQLASNYTLSEAK"
misc_feature complement(339409..340146)
/locus_tag="SeAg_B0346"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3034"
/db_xref="CDD:225577"
misc_feature complement(339670..340020)
/locus_tag="SeAg_B0346"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:217702"
gene 340396..341451
/locus_tag="SeAg_B0347"
/db_xref="GeneID:6793523"
CDS 340396..341451
/locus_tag="SeAg_B0347"
/EC_number="2.7.7.7"
/note="involved in translesion DNA polymerization with
beta clamp of polymerase III; belongs to Y family of
polymerases; does not contain proofreading function"
/codon_start=1
/transl_table=11
/product="DNA polymerase IV"
/protein_id="YP_002145295.1"
/db_xref="GI:197250353"
/db_xref="GeneID:6793523"
/translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA
NYPARQFGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSL
DEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNG
QYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGKF
GRVLWERSQGIDERDVNSERLRKSVGVERTLAEDIHEWSDCEAIIEHLYPELERRLAI
VKPDLLIARQGVKLKFNDFQQTTQEHVWPQLNKEDLITTARKTWNERRGERGVRLVGL
HVTLLDPQLERQLVLGL"
misc_feature 340408..341358
/locus_tag="SeAg_B0347"
/note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa;
cd03586"
/db_xref="CDD:176459"
misc_feature order(340417..340422,340426..340434,340519..340524,
340531..340533,340540..340542,340702..340704,
340864..340866)
/locus_tag="SeAg_B0347"
/note="active site"
/db_xref="CDD:176459"
misc_feature 340420..341448
/locus_tag="SeAg_B0347"
/note="DNA polymerase IV; Validated; Region: PRK02406"
/db_xref="CDD:179421"
misc_feature order(340492..340494,340567..340569,340696..340698,
340702..340707,340843..340845,340939..340959,
341044..341049,341116..341139,341212..341214,
341287..341298)
/locus_tag="SeAg_B0347"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176459"
gene 341670..342809
/locus_tag="SeAg_B0348"
/db_xref="GeneID:6795077"
CDS 341670..342809
/locus_tag="SeAg_B0348"
/note="mutations in this gene result in a compromised
ability for drug-inducible mexXY expression; expression is
inducible by the same ribosome-targeting agents that
induce mexXY"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145296.1"
/db_xref="GI:197250684"
/db_xref="GeneID:6795077"
/translation="MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIG
MPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLAS
LPDVADAQWLEENVPAAMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQK
TQLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRAL
IACRILQQLRAEGEPRLDVAHNFVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDY
SWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQL
IYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA"
misc_feature 341670..342797
/locus_tag="SeAg_B0348"
/note="hypothetical protein; Reviewed; Region: PRK09588"
/db_xref="CDD:181972"
misc_feature 341703..342770
/locus_tag="SeAg_B0348"
/note="Hedgehog/Intein domain, found in Hedgehog proteins
as well as proteins which contain inteins and undergo
protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In
protein splicing an intervening polypeptide sequence - the
intein - is excised from a protein; Region: Hint; cl15780"
/db_xref="CDD:214250"
gene 342806..343420
/gene="prfH"
/locus_tag="SeAg_B0349"
/db_xref="GeneID:6793812"
CDS 342806..343420
/gene="prfH"
/locus_tag="SeAg_B0349"
/note="similar to release factor 1 and 2"
/codon_start=1
/transl_table=11
/product="peptide chain release factor-like protein"
/protein_id="YP_002145297.1"
/db_xref="GI:197248567"
/db_xref="GeneID:6793812"
/translation="MILLQLSSAQGPDECCLAVKKALDCLTKEAAREKVSLTRLETEP
GRLPDTLRSALVSLDGEKAMAFSERWCGTLLWICTSPYRPHHGRKNWYVGIGRFSADE
QMQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
IAWRLEQQRQNECAALKSERRLFHHQIERGNPLRIFKGMAFTPQ"
misc_feature 342806..343405
/gene="prfH"
/locus_tag="SeAg_B0349"
/note="peptide chain release factor-like protein;
Reviewed; Region: prfH; PRK08179"
/db_xref="CDD:181271"
misc_feature 342809..343414
/gene="prfH"
/locus_tag="SeAg_B0349"
/note="Protein chain release factor B [Translation,
ribosomal structure and biogenesis]; Region: PrfB;
COG1186"
/db_xref="CDD:31379"
gene complement(343575..345032)
/gene="pepD"
/locus_tag="SeAg_B0350"
/db_xref="GeneID:6797016"
CDS complement(343575..345032)
/gene="pepD"
/locus_tag="SeAg_B0350"
/note="identified by match to protein family HMM PF01546;
match to protein family HMM PF07687; match to protein
family HMM TIGR01893"
/codon_start=1
/transl_table=11
/product="aminoacyl-histidine dipeptidase"
/protein_id="YP_002145298.1"
/db_xref="GI:197250098"
/db_xref="GeneID:6797016"
/translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKG
LYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIQPYIDG
EWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWL
QADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGG
EIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVAADNVGAL
KTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRN
SDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
KGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIG
PTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK"
misc_feature complement(343584..345014)
/gene="pepD"
/locus_tag="SeAg_B0350"
/note="Xaa-His dipeptidase; Region: aa-his-dipept;
TIGR01893"
/db_xref="CDD:162585"
misc_feature complement(343587..345008)
/gene="pepD"
/locus_tag="SeAg_B0350"
/note="M20 Peptidase D has specificity for
beta-alanyl-L-histidine dipeptide; Region: M20_pepD;
cd03890"
/db_xref="CDD:193510"
misc_feature complement(order(343662..343664,344526..344528,
344595..344600,344688..344690,344805..344807))
/gene="pepD"
/locus_tag="SeAg_B0350"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193510"
misc_feature complement(order(343887..343892,343899..343904,
343911..343913,344022..344027,344034..344036,
344055..344060,344064..344069,344163..344165,
344175..344177,344334..344336,344364..344366))
/gene="pepD"
/locus_tag="SeAg_B0350"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193510"
gene 345281..345739
/gene="gpt"
/locus_tag="SeAg_B0351"
/db_xref="GeneID:6794195"
CDS 345281..345739
/gene="gpt"
/locus_tag="SeAg_B0351"
/EC_number="2.4.2.22"
/note="'catalyzes the conversion of guanine, xanthine and,
to a lesser extent, hypoxanthine to GMP, XMP and IMP,
respectively'"
/codon_start=1
/transl_table=11
/product="xanthine-guanine phosphoribosyltransferase"
/protein_id="YP_002145299.1"
/db_xref="GI:197249007"
/db_xref="GeneID:6794195"
/translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
MYPKAHFVTIFAKPAGRPLVDDYVIDIPQNTWIEQPWDMGVVFVPPISGR"
misc_feature 345374..345667
/gene="gpt"
/locus_tag="SeAg_B0351"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(345386..345388,345392..345394,345542..345550,
345554..345568,345623..345625)
/gene="gpt"
/locus_tag="SeAg_B0351"
/note="active site"
/db_xref="CDD:206754"
gene 345828..347072
/gene="frsA"
/locus_tag="SeAg_B0352"
/db_xref="GeneID:6797301"
CDS 345828..347072
/gene="frsA"
/locus_tag="SeAg_B0352"
/EC_number="3.1.-.-"
/note="forms a 1:1 complex with the unphosphorylated from
of enzyme IIAGlc; FrsA may promote fermentation"
/codon_start=1
/transl_table=11
/product="fermentation/respiration switch protein"
/protein_id="YP_002145300.1"
/db_xref="GI:197249425"
/db_xref="GeneID:6797301"
/translation="MTQANLSETLFKPRFKHTETSTLVRRFNRGSQPPMQSALDGKNV
PHWYRMINRLMWIWRGVDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
KQAMDWQQKACQEQDAMRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEA
AQRLPGSLREMEFAVPGGSPVTAFLHMPKGDGPFPTVLMCGGLDAMQTDYYTLYERYF
APRGIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
NVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMHDASDEA
LRVELNRYSLKVQGLLGRRCPTPMLSGFWKNDPFSPEEESRLITTSSSDGKLIEIPFN
PVYRNFDHALQEITDWINHRLC"
misc_feature 345828..347069
/gene="frsA"
/locus_tag="SeAg_B0352"
/note="fermentation/respiration switch protein; Reviewed;
Region: frsA; PRK05077"
/db_xref="CDD:179925"
gene 347130..347531
/locus_tag="SeAg_B0353"
/db_xref="GeneID:6793336"
CDS 347130..347531
/locus_tag="SeAg_B0353"
/note="involved in the expression of csgBA which is
involved in curli formation; interacts with sigmaS"
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional regulator Crl"
/protein_id="YP_002145301.1"
/db_xref="GI:197247709"
/db_xref="GeneID:6793336"
/translation="MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNV
KPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTAVPINETEVVERLEYTLRE
FHEKLRDLLISMELALEPSDDFNDEPVKLSA"
misc_feature 347130..347510
/locus_tag="SeAg_B0353"
/note="DNA-binding transcriptional regulator Crl;
Provisional; Region: PRK10984"
/db_xref="CDD:182882"
gene complement(347582..348634)
/locus_tag="SeAg_B0354"
/db_xref="GeneID:6797109"
CDS complement(347582..348634)
/locus_tag="SeAg_B0354"
/note="identified by match to protein family HMM PF00267"
/codon_start=1
/transl_table=11
/product="outer membrane phosphoporin protein E"
/protein_id="YP_002145302.1"
/db_xref="GI:197247505"
/db_xref="GeneID:6797109"
/translation="MNKSTLAIVVSIIASASVHAAEVYNKNGNKLDVYGKVKAMHYMS
DYDSKDGDQSYVRFGFKGETQINDQLTGYGRWEAEFAGNKAESDSSQQKTRLAFAGLK
LKDIGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFG
IVDGLDLTLQYQGKNEDRDVKKQNGDGFGTSVSYDFGGSDFAVSGAYTLSDRTREQNL
QRRGTGDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQFD
FGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNTL
GINDDDIVAIGLTYQF"
misc_feature complement(347585..348550)
/locus_tag="SeAg_B0354"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; Region:
gram_neg_porins; cd00342"
/db_xref="CDD:30071"
misc_feature complement(order(347585..347587,347591..347593,
347597..347599,347684..347686,347693..347698,
348188..348193,348197..348199,348296..348304,
348332..348346,348350..348355,348386..348397,
348401..348403,348407..348415,348419..348421,
348437..348451,348512..348520,348524..348526,
348542..348544,348548..348550))
/locus_tag="SeAg_B0354"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:30071"
misc_feature complement(order(348197..348199,348257..348259,
348350..348352,348464..348466,348527..348529))
/locus_tag="SeAg_B0354"
/note="eyelet of channel; other site"
/db_xref="CDD:30071"
gene complement(348700..348852)
/locus_tag="SeAg_B0355"
/db_xref="GeneID:6793148"
CDS complement(348700..348852)
/locus_tag="SeAg_B0355"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145303.1"
/db_xref="GI:197249852"
/db_xref="GeneID:6793148"
/translation="MPTTCTRSVKFCCAGSASVAAEFDHFITATIKHIFLKKFSLCHK
SFITER"
gene 348917..350020
/gene="proB"
/locus_tag="SeAg_B0356"
/db_xref="GeneID:6793045"
CDS 348917..350020
/gene="proB"
/locus_tag="SeAg_B0356"
/EC_number="2.7.2.11"
/note="catalyzes the formation of glutamate 5-phosphate
from glutamate in proline biosynthesis"
/codon_start=1
/transl_table=11
/product="gamma-glutamyl kinase"
/protein_id="YP_002145304.1"
/db_xref="GI:197251188"
/db_xref="GeneID:6793045"
/translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQML
LTRADMEDRERFLNARDTLRALLDNHIVPVINENDAVATAEIKVGDNDNLSALAAILA
GADKLLLLTDQQGLFTADPRSNPQAELIKDVYGVDDALRSIAGDSVSGLGTGGMSTKL
QAADVACRAGIDTIIASGSKPGVIGDVMEGISVGTRFHAQASPLENRKRWIFGAPPAG
EITVDEGATAAMLERGSSLLPKGIKSVTGNFSRGEVIRICNLQGRDIAHGVSRYNSDA
LRRIAGHHSQQIDAILGYEYGPVAVHRDDMITR"
misc_feature 348917..350011
/gene="proB"
/locus_tag="SeAg_B0356"
/note="gamma-glutamyl kinase; Provisional; Region:
PRK05429"
/db_xref="CDD:235460"
misc_feature 348932..349684
/gene="proB"
/locus_tag="SeAg_B0356"
/note="AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes
glutamate-dependent ATP cleavage; G5K transfers the
terminal phosphoryl group of ATP to the gamma-carboxyl
group of glutamate, in the first and controlling step of
proline (and, in mammals, ornithine)...; Region:
AAK_G5K_ProB; cd04242"
/db_xref="CDD:239775"
misc_feature order(348956..348958,349421..349429,349436..349441,
349547..349549,349553..349555,349565..349567)
/gene="proB"
/locus_tag="SeAg_B0356"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239775"
misc_feature order(349031..349036,349043..349045,349133..349135,
349145..349147,349214..349216,349220..349222,
349262..349267,349283..349285,349292..349294,
349322..349324,349328..349333)
/gene="proB"
/locus_tag="SeAg_B0356"
/note="homotetrameric interface [polypeptide binding];
other site"
/db_xref="CDD:239775"
misc_feature 349067..349090
/gene="proB"
/locus_tag="SeAg_B0356"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:239775"
misc_feature order(349070..349072,349325..349327,349358..349360)
/gene="proB"
/locus_tag="SeAg_B0356"
/note="putative allosteric binding site; other site"
/db_xref="CDD:239775"
misc_feature 349742..349966
/gene="proB"
/locus_tag="SeAg_B0356"
/note="PUA domain; Region: PUA; pfam01472"
/db_xref="CDD:201816"
gene 350032..351282
/gene="proA"
/locus_tag="SeAg_B0357"
/db_xref="GeneID:6793514"
CDS 350032..351282
/gene="proA"
/locus_tag="SeAg_B0357"
/EC_number="1.2.1.41"
/note="Catalyzes the phosphorylation of L-glutamate during
the proline biosynthesis pathway"
/codon_start=1
/transl_table=11
/product="gamma-glutamyl phosphate reductase"
/protein_id="YP_002145305.1"
/db_xref="GI:197249439"
/db_xref="GeneID:6793514"
/translation="MLEQMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILS
ANVQDVEQARDNGLSEAMLDRLTLTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSG
LRLERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAVILRGGKETHRTNAATVRVIQ
KALKACGLPEAAVQAIDNPDRSLVNEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
TGGIGVCHIFVDSSADIAPALKIIVNAKTQRPSTCNTVETLLVHQDIAERFLPALSKQ
MAESGVTLHGDETVMQVLHGPAKLVPLKPEELDNEFLSLDLNVVVVENMDGAIGHIRE
HGTQHSDAILTCDMHNAARFVNEVDSAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHA
RGPMGLEALTTYKWIGFGDGTIRA"
misc_feature 350098..351264
/gene="proA"
/locus_tag="SeAg_B0357"
/note="Gamma-glutamyl phosphate reductase (GPR), aldehyde
dehydrogenase families 18 and 19; Region:
ALDH_F18-19_ProA-GPR; cd07079"
/db_xref="CDD:143398"
misc_feature 350098..351246
/gene="proA"
/locus_tag="SeAg_B0357"
/note="gamma-glutamyl phosphate reductase; Region: proA;
TIGR00407"
/db_xref="CDD:161862"
misc_feature 350788..350790
/gene="proA"
/locus_tag="SeAg_B0357"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143398"
gene 351398..351473
/locus_tag="SeAg_B0358"
/db_xref="GeneID:6793350"
tRNA 351398..351473
/locus_tag="SeAg_B0358"
/product="tRNA-Thr"
/db_xref="GeneID:6793350"
gene complement(351909..352772)
/locus_tag="SeAg_B0359"
/db_xref="GeneID:6794959"
CDS complement(351909..352772)
/locus_tag="SeAg_B0359"
/note="identified by match to protein family HMM PF00665"
/codon_start=1
/transl_table=11
/product="ISEc16, orfB"
/protein_id="YP_002145306.2"
/db_xref="GI:449785018"
/db_xref="GeneID:6794959"
/translation="MLASTPPTSTGVFNRALSSLAIACICKRYVWHQRRHQINRRQRF
RLVCDNVVREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFR
PVSYRKHGLPVSENLLKQDFYASGPNQKWVDDITYLRTGEGWLYLAVVIDLWSRSVIG
WSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSMS
ARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYIECDYNRWRRHSACGGL
SPEQFENQNLA"
misc_feature complement(352470..352622)
/locus_tag="SeAg_B0359"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(351912..352598)
/locus_tag="SeAg_B0359"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:32633"
misc_feature complement(352053..352394)
/locus_tag="SeAg_B0359"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(351915..352085)
/locus_tag="SeAg_B0359"
/note="Integrase core domain; Region: rve_2; pfam13333"
/db_xref="CDD:205513"
gene 352771..353412
/locus_tag="SeAg_B0360"
/db_xref="GeneID:6797378"
CDS 352771..353412
/locus_tag="SeAg_B0360"
/codon_start=1
/transl_table=11
/product="glycerol dehydratase reactivation factor large
subunit"
/protein_id="YP_002145307.2"
/db_xref="GI:449785019"
/db_xref="GeneID:6797378"
/translation="MAVAGALTTPGCDAPLAILDLGAGSTDAAIINSDGVVKAVHLAG
AGNIVSLLIQTELGLSDPFLAEEIKKYPLAKVESLFSIRHENGAVEFFREPLSPSVFA
KVVYLKEGELIPVDNQTSLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDITFVV
LVGGSSLDFEIPQMITDALAHYGVVAGQGNIRGTEGPRNAVATGLVLAGEAKK"
misc_feature <352771..353406
/locus_tag="SeAg_B0360"
/note="Diol dehydratase reactivase ATPase-like domain;
Region: DDR; pfam08841"
/db_xref="CDD:149788"
misc_feature <352816..353397
/locus_tag="SeAg_B0360"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
gene 353546..353845
/locus_tag="SeAg_B0361"
/db_xref="GeneID:6794832"
CDS 353546..353845
/locus_tag="SeAg_B0361"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145308.2"
/db_xref="GI:449785020"
/db_xref="GeneID:6794832"
/translation="MPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPA
SPEVVMARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV"
misc_feature 353546..353842
/locus_tag="SeAg_B0361"
/note="Domain of unknown function (DUF1889); Region:
DUF1889; pfam08986"
/db_xref="CDD:192193"
gene 354087..355424
/locus_tag="SeAg_B0362"
/db_xref="GeneID:6797330"
CDS 354087..355424
/locus_tag="SeAg_B0362"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="YP_002145309.1"
/db_xref="GI:197249845"
/db_xref="GeneID:6797330"
/translation="MNAVNSANVKDKYCIHGCLLANRQMAIRIFYGTLCMKNNIEETI
GKYLPILMILPLAGLAELASLYSIQALLPKLSEVYNIPLNQVGMILSAEVGFLALAML
FSGTLSDRFGRKPIIFYSLLAGGILTLLCATASSWPMLVVYRALLGIAVSGITAAVTV
YISEEVSPALAGIVTGYFIFGNSLGSMSGRVFATLMMEHVSIDTIFFIFGGVLIAMAL
AVKLFLPTSRQFVPTPSLQLGAVLKGGLEHFKNIRVSLCFVIGFILFGSFTSIFNFLA
FYLHRPPYELSYTWIGLIPVSFSLTFFLAPYAARVALNIGSMNALSMLIICMMVGAFL
TLIAPSLWVFISGIVLLSVAFFSAHSTVLAWVSSRSPNAKGQATSFYLLCYYSGGAVM
GYLNGYLFSWQGWNAIAASCLMMLGIGLFICRFIFAKYEKQPQIKKQSVQESF"
misc_feature 354234..355391
/locus_tag="SeAg_B0362"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature 354237..355367
/locus_tag="SeAg_B0362"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(354279..354281,354288..354296,354300..354305,
354354..354356,354363..354368,354375..354377,
354387..354392,354396..354401,354537..354542,
354549..354554,354561..354566,354573..354575,
354609..354614,354621..354626,354642..354644,
354879..354881,354888..354893,354900..354905,
354912..354914,354954..354956,354966..354968,
354978..354980,354987..354989,354999..355001,
355140..355142,355149..355154,355161..355163,
355173..355178,355185..355187,355215..355220,
355227..355232,355239..355244,355251..355253)
/locus_tag="SeAg_B0362"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 355556..356977
/gene="leuC"
/locus_tag="SeAg_B0363"
/note="'3-isopropylmalate dehydratase, large subunit; this
gene contains a frame shift which may be the result of
sequencing error; identified by match to protein family
HMM PF00330; match to protein family HMM TIGR00170'"
/pseudogene="unknown"
/db_xref="GeneID:6793038"
gene 356979..357605
/gene="leuD"
/locus_tag="SeAg_B0364"
/db_xref="GeneID:6792472"
CDS 356979..357605
/gene="leuD"
/locus_tag="SeAg_B0364"
/EC_number="4.2.1.33"
/note="identified by match to protein family HMM PF00694;
match to protein family HMM TIGR00171"
/codon_start=1
/transl_table=11
/product="3-isopropylmalate dehydratase small subunit"
/protein_id="YP_002145310.1"
/db_xref="GI:197251116"
/db_xref="GeneID:6792472"
/translation="MDTFKQISGRIAPMLEPNIDTDVIMPKQFLKGIDRQGLDKGVFF
DRRFMAGGQPNPDFILNMPGWQSATFLLVGPNFGCGSSREHAVWGLKQLGIRGLIGST
FAGIFDDNCQRNGILTVSLDEPALARLAQLAASADTNSITVSLDRCEITTAEETISFV
ISELKRAMLAAGEDAIAWTLQYLPEIENFEVAHYSRRPWLKRPASPRG"
misc_feature 357018..357350
/gene="leuD"
/locus_tag="SeAg_B0364"
/note="Aconatase-like swivel domain of 3-isopropylmalate
dehydratase and related uncharacterized proteins.
3-isopropylmalate dehydratase catalyzes the isomerization
between 2-isopropylmalate and 3-isopropylmalate, via the
formation of 2-isopropylmaleate...; Region: IPMI_Swivel;
cd01577"
/db_xref="CDD:73275"
misc_feature 357216..357572
/gene="leuD"
/locus_tag="SeAg_B0364"
/note="Aconitase swivel domain. Aconitase (aconitate
hydratase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle. This is
the aconitase swivel domain, which undergoes swivelling
conformational change in the enzyme...; Region:
Aconitase_swivel; cl00215"
/db_xref="CDD:213084"
misc_feature 357219..357227
/gene="leuD"
/locus_tag="SeAg_B0364"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73275"
gene 357620..358498
/locus_tag="SeAg_B0365"
/db_xref="GeneID:6793771"
CDS 357620..358498
/locus_tag="SeAg_B0365"
/note="identified by match to protein family HMM PF01557"
/codon_start=1
/transl_table=11
/product="5-oxopent-3-ene-1,2,5-tricarboxylate
decarboxylase"
/protein_id="YP_002145311.1"
/db_xref="GI:197251752"
/db_xref="GeneID:6793771"
/translation="MKLVQYLVNGGKRYGIMQETGIIDLSQRLGDKYPTLKSLLCANA
LTDAALWCDEPADYYYQEVTFLPVIDDPQKIICVGMNYADKRIEFNETNPAPTLFVRF
ADSQTGHNGLLLKPENTNEFDYEGELAVVIGRRCSRVSAEDALDYVAGYSCYMDGSVR
DWQHSWFTAGKNWPSTGSFGPCLVTTDDIPDPQMLRLLTRLNGREVQNESTANMIHPI
ASLIAYISTFTLLSPGDTILTGSPGGVGKKRVPPLFLHDGDVIEVEIEHIGTLRNVVR
DSRYLTSSVSWHDGRK"
misc_feature 357620..358456
/locus_tag="SeAg_B0365"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 357839..358447
/locus_tag="SeAg_B0365"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 358498..359412
/locus_tag="SeAg_B0366"
/db_xref="GeneID:6793645"
CDS 358498..359412
/locus_tag="SeAg_B0366"
/EC_number="3.8.1.3"
/note="identified by match to protein family HMM PF00561"
/codon_start=1
/transl_table=11
/product="haloacetate dehalogenase H-1"
/protein_id="YP_002145312.1"
/db_xref="GI:197247520"
/db_xref="GeneID:6793645"
/translation="MSTLIECGASPFIPGFALKDVRLENGLTVRVAIGGSGSPLVLLH
GHPQNHTTWRKVAPTLAQNHTVILPDLRGYGDSDKPTSDPAHRTYSKRTMAQDIVMLM
DALGFSRFAFVGHDRGGRVGHRLALDYPDRVTCCTFIDIAPTATMYALTDKSFATRYF
WWFFLIQPFPLPETMIAHDPAFFLRKHISGQLKIEGATSQEAFNEYLRCYQNPEMIHA
ICEDYRAAATIDLDDDAADTSARIRCPLQLLWGGLGTVGQLYDVVGTWKEKALNVQGE
ALPCGHSPQEECPEYFIQKLQSFLHSVL"
misc_feature 358570..359406
/locus_tag="SeAg_B0366"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:223669"
gene 359446..360411
/locus_tag="SeAg_B0367"
/db_xref="GeneID:6793163"
CDS 359446..360411
/locus_tag="SeAg_B0367"
/note="identified by match to protein family HMM PF00126;
match to protein family HMM PF03466"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002145313.1"
/db_xref="GI:197247663"
/db_xref="GeneID:6793163"
/translation="MKTTPVGKKHRQPLEGWPSVEDLFVFVTVARNGGFARAALELGL
SPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGENALGGAMQVVSEMDGFVSRLDNQ
RGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVKLTLTDREVDLVEEGIDIEIR
VGDDINELYIARQLATNRRILCASPEYLERHGKPESVSALVQHDCLMIQEKNSAFGNW
ILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLRSEWDVAQYIERGELVRVLPQ
WYQEANIWAVYTRRSSSSDRIKICIDFLTEHLAQCLPGGKAPGVL"
misc_feature 359485..360357
/locus_tag="SeAg_B0367"
/note="transcriptional activator TtdR; Provisional;
Region: PRK09801"
/db_xref="CDD:182085"
misc_feature 359506..359682
/locus_tag="SeAg_B0367"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 359767..360357
/locus_tag="SeAg_B0367"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_9; cd08479"
/db_xref="CDD:176168"
misc_feature order(359797..359799,359809..359811,359926..359928,
359968..359970,359974..359976,360163..360165,
360214..360216,360292..360294)
/locus_tag="SeAg_B0367"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176168"
misc_feature order(359800..359805,359815..359820,359824..359829,
359836..359838,359848..359850,359854..359874,
360055..360057,360145..360159,360178..360183,
360190..360192)
/locus_tag="SeAg_B0367"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176168"
gene 361320..361718
/locus_tag="SeAg_B0368"
/db_xref="GeneID:6797061"
CDS 361320..361718
/locus_tag="SeAg_B0368"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_002145314.2"
/db_xref="GI:449785021"
/db_xref="GeneID:6797061"
/translation="MKLIIILLLALFPLCSSASNHYALVFENNTILLVLNLKCSPCDL
NCANIQYQLFNKETESVISGVAKPVTTGIENNFRGYMMRNNNTFYTLIESDNENVWDM
SVEEKGTQQNKDAVQKVKYQLNTIFDNGTC"
gene complement(361765..362523)
/locus_tag="SeAg_B0369"
/db_xref="GeneID:6795567"
CDS complement(361765..362523)
/locus_tag="SeAg_B0369"
/note="identified by match to protein family HMM PF00345;
match to protein family HMM PF02753"
/codon_start=1
/transl_table=11
/product="fimbrial chaperone protein"
/protein_id="YP_002145315.1"
/db_xref="GI:197249532"
/db_xref="GeneID:6795567"
/translation="MRNYRQWLVFSKVILTLLGLTGWYGPAQAAVNIDRTRIIFASDD
VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL
SSRQQLATDRESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEA
EEKKLRFIAKENTIRIVNPTSWYMSLTLTMDNKKSIGDIMVAPKTARDVPLTRSPTPG
ASINYAVINDSGNWRQYTAILEKYISESDFTPEF"
misc_feature complement(361768..362466)
/locus_tag="SeAg_B0369"
/note="fimbrial assembly chaperone StbE; Provisional;
Region: PRK15246"
/db_xref="CDD:185158"
misc_feature complement(362128..362436)
/locus_tag="SeAg_B0369"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(361819..362004)
/locus_tag="SeAg_B0369"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(362489..363814)
/locus_tag="SeAg_B0370"
/db_xref="GeneID:6792874"
CDS complement(362489..363814)
/locus_tag="SeAg_B0370"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial usher"
/protein_id="YP_002145316.1"
/db_xref="GI:197250266"
/db_xref="GeneID:6792874"
/translation="MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTA
QNWIGATDTNTGNIGLPTVISVSNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLY
RCDTADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF
WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGY
IAFKGPGLITERIKAGLDHASDYYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVK
IPPVAVGILASGGNSQAPFHVSLECESGAVSSALPSTSAANVAMGFVVNQPTAVAAAR
RLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWY
GYKDLTTRVSSGSVETYSGDFTASLEAIGGQTVTAGSVNAQLQAVVSFQ"
misc_feature complement(362492..363814)
/locus_tag="SeAg_B0370"
/note="putative fimbrial usher protein StbD; Provisional;
Region: PRK15247"
/db_xref="CDD:185159"
gene complement(363819..366380)
/locus_tag="SeAg_B0371"
/db_xref="GeneID:6796233"
CDS complement(363819..366380)
/locus_tag="SeAg_B0371"
/note="identified by match to protein family HMM PF00577"
/codon_start=1
/transl_table=11
/product="outer membrane fimbrial usher protein"
/protein_id="YP_002145317.1"
/db_xref="GI:197248725"
/db_xref="GeneID:6796233"
/translation="MSPTINLNRKSLALLIAIVCSGSAQGEEYYFDPALLQGATYGQN
IARFNEQQTPSGDYLADVYVNGTLVTSSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKS
LPATDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGAL
ALFLRHNTNWTHTENTDSHYRYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQSGSAW
RYNSVRTWVQRPVASINSILSLGDSYTDSSLFGSLSFNGAKLVTDERMRPQGKRGYAP
EVRGVAASSAHVVVKQLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSR
FTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIENRFFEGTFQHGVNNTITLNLGSRIA
QRYQAWLAGGVWATGMGAFGLNATWSNARAEHNDRQQGWRAELSYSKTFTTGTNLVLA
AYRYSTNGFRDLQDVLGVRREAKTGIDYYSDTLHQRNRLSATVSQPLGRLGTLNLSAS
TADYYNNQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYDRFYHGVNEPLDVSSRQK
YTETTMSFNVSIPLDWGENRTSVAMNYNQSSQSRSSTVSMTGSNGENSDLSWSVYGGY
ERYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQGDNYRQEGLGASGTLVLHPGGLT
AGPYTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAILPSLSPYRVNNVTLDTRKMRS
DAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIG
MVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVAYQLDLHTKEPFLYLNKICEKE"
misc_feature complement(363822..366380)
/locus_tag="SeAg_B0371"
/note="fimbrial outer membrane usher protein StbC;
Provisional; Region: PRK15248"
/db_xref="CDD:185160"
misc_feature complement(365874..366293)
/locus_tag="SeAg_B0371"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:206124"
misc_feature complement(364092..365825)
/locus_tag="SeAg_B0371"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:201318"
misc_feature complement(363873..364064)
/locus_tag="SeAg_B0371"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:206123"
gene complement(366364..367167)
/locus_tag="SeAg_B0372"
/db_xref="GeneID:6795613"
CDS complement(366364..367167)
/locus_tag="SeAg_B0372"
/note="identified by match to protein family HMM PF00345"
/codon_start=1
/transl_table=11
/product="fimbrial chaperone protein"
/protein_id="YP_002145318.1"
/db_xref="GI:197249620"
/db_xref="GeneID:6795613"
/translation="MKRQTIFNRQGVVEMKVDTRHSALYYLIVFLLLALPATASWASV
TILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVF
RIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIK
LFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNL
DADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH"
misc_feature complement(366367..367125)
/locus_tag="SeAg_B0372"
/note="fimbrial chaperone protein StbB; Provisional;
Region: PRK15249"
/db_xref="CDD:185161"
misc_feature complement(366664..367041)
/locus_tag="SeAg_B0372"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:201170"
misc_feature complement(366388..366594)
/locus_tag="SeAg_B0372"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:202375"
gene complement(367187..367723)
/locus_tag="SeAg_B0373"
/db_xref="GeneID:6796311"
CDS complement(367187..367723)
/locus_tag="SeAg_B0373"
/note="identified by match to protein family HMM PF00419"
/codon_start=1
/transl_table=11
/product="fimbrial protein"
/protein_id="YP_002145319.1"
/db_xref="GI:197249963"
/db_xref="GeneID:6796311"
/translation="MSMKKYLAMITGSLLVSSSAMAVSDNTITFQGEVSDETCSVVIN
GNQAKPVVLLPTVSTKELSEQGKTAGPITFDIGLSGCTGSQDKTTKISTVFVGNQVTS
NGNLGNTGSAKNVEVQLLDTSGEPINLTGGFTGDGDLQLEPNASEASATYTARYYSTG
KAEAGTVAATLQYAVSYK"
misc_feature complement(367190..367651)
/locus_tag="SeAg_B0373"
/note="P pilus assembly protein, pilin FimA [Cell motility
and secretion / Intracellular trafficking and secretion];
Region: FimA; COG3539"
/db_xref="CDD:33341"
gene 368387..369121
/locus_tag="SeAg_B0374"
/db_xref="GeneID:6796904"
CDS 368387..369121
/locus_tag="SeAg_B0374"
/codon_start=1
/transl_table=11
/product="transmembrane regulator"
/protein_id="YP_002145320.1"
/db_xref="GI:197249726"
/db_xref="GeneID:6796904"
/translation="MNESIFLLDKRVVFDSTKMTLSHGNEIIRISEAETHLLLAFWHG
LYKKEDIIHFVWENRGGCVSESSYYKLINQMRNDFSSIGLQPSDIVTRPRVGVSLSVA
IEPIKKITSLKVSDENVKGTPTRENVFYKIKRHSVFVVLTGAILLALLYGVFTIYKAP
VRNSPDSFFTYLGEYNDYAIYKTKEDKVTLSEVVFAFNSLKIKIYRQNGRHLYYIREP
NMNIFLQCLNPVEMAVPKCITVKERY"
misc_feature 368420..>368698
/locus_tag="SeAg_B0374"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:214025"
gene 369094..369594
/locus_tag="SeAg_B0375"
/note="conserved hypothetical protein; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6795670"
gene 369929..371479
/locus_tag="SeAg_B0376"
/db_xref="GeneID:6795474"
CDS 369929..371479
/locus_tag="SeAg_B0376"
/note="identified by match to protein family HMM PF00563"
/codon_start=1
/transl_table=11
/product="cyclic diguanylate phosphodiesterase (EAL)
domain-containing protein"
/protein_id="YP_002145321.1"
/db_xref="GI:197250980"
/db_xref="GeneID:6795474"
/translation="MLFIAVPLIVMILVGLLAGIFQLKRDIAVSANTLLRFSADISAA
SWQVAGKAARLAESSCTDTLKELSRTRAFTPYVRDIGFLENGDITCSFVTGTERYHFS
RLAGLSLPASYPERWLRSIGSMAEGPDRLVVVYVKKVAANKAAFVIVDSQYVQELMEI
LAAERASAFSLTFGAGEAITSAATLRGKAFLTQRFTSTDHTIQLMVRTPFSTLSAYWL
QNLFIFVPLSLCLSVGMILFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGS
CGGVEALMRWPQPDGRFITPDIFITAAENEGMIIPLSRHLFELIAHDVINWTVPDDFY
ISVNISPAHLMDDGFIQDIEALRTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKG
VLIAIDDFGTGYCSLSYLQQLPVDSLKIDRTFIDTIDTSSNDVPVLDTIITLSQRLGL
NVVAEGVSTQHQLRYILSHGVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLKGENE
SASGLVAE"
misc_feature 369992..370603
/locus_tag="SeAg_B0376"
/note="CSS motif domain associated with EAL; Region:
CSS-motif; pfam12792"
/db_xref="CDD:205074"
misc_feature 370679..371389
/locus_tag="SeAg_B0376"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 371579..372322
/locus_tag="SeAg_B0377"
/db_xref="GeneID:6794116"
CDS 371579..372322
/locus_tag="SeAg_B0377"
/note="identified by match to protein family HMM PF00486"
/codon_start=1
/transl_table=11
/product="response regulator"
/protein_id="YP_002145322.1"
/db_xref="GI:197251588"
/db_xref="GeneID:6794116"
/translation="MSQNNYLIDKRVILDCERMTLSCAGESITISESERSLLIAFHEG
LFKKDDLINYVWGRKGVVVSDASYYKLINQLRGSFDKIGLKGASVVTRPRVGVLLSVS
IEPLSDEAQNTPLPAVAETELSTVEVRRDDTIIPPIPGAVNKKDWLYFCLAALLMFFM
MYKVKGENIDYFTLQGSYDGYTFYSVGHDKTHLTDIVEAYSEMSNEIHKQNGKIIYYI
RVPNTNIFVQCLNQLDIAEPKCISIKERY"
misc_feature 371585..371944
/locus_tag="SeAg_B0377"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:214025"
misc_feature order(371669..371671,371717..371722,371777..371779,
371786..371788,371810..371815,371849..371851,
371864..371866)
/locus_tag="SeAg_B0377"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 372295..372783
/locus_tag="SeAg_B0378"
/db_xref="GeneID:6796801"
CDS 372295..372783
/locus_tag="SeAg_B0378"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145323.1"
/db_xref="GI:197247872"
/db_xref="GeneID:6796801"
/translation="MHFYKRTLLSVATLGMLAVSVVLMVVWVRNSSHSSINTNEFLCT
TRTVTTIQPKDIHADGSLVLDFKMKRITLQYEIKTKDNGVKILYRDVYMKNLHRTAPG
VYTFEVSQVKVFATDTAGDLLSYLRVLHPEAANEIRISKVGEKTFFYSLNRQLYNVCT
AQ"
gene 373185..373709
/locus_tag="SeAg_B0379"
/db_xref="GeneID:6794817"
CDS 373185..373709
/locus_tag="SeAg_B0379"
/note="identified by match to protein family HMM PF06316;
match to protein family HMM TIGR03304"
/codon_start=1
/transl_table=11
/product="attachment invasion locus protein"
/protein_id="YP_002145324.1"
/db_xref="GI:197248393"
/db_xref="GeneID:6794817"
/translation="MKRRSSFLVFLGLLLASPLALANDQHTVSFGYAQTHLSSLKNSD
SKDLRGFNFKYRYEFNETWGMLGSFTATRNEMENYTWKEGKLHKNGSDSVDYGSLMFG
PTYRFNDYVSLYGNAGIATMKFNKHSKEDSFAYGAGVIFNPVKSISIDASWEASRFFA
VDTNTFGVSVGYRF"
misc_feature 373257..373706
/locus_tag="SeAg_B0379"
/note="Outer membrane protein beta-barrel domain; Region:
OMP_b-brl; cl17254"
/db_xref="CDD:247808"
gene 373853..374494
/locus_tag="SeAg_B0380"
/db_xref="GeneID:6796439"
CDS 373853..374494
/locus_tag="SeAg_B0380"
/codon_start=1
/transl_table=11
/product="response regulator"
/protein_id="YP_002145325.1"
/db_xref="GI:197248072"
/db_xref="GeneID:6796439"
/translation="MINSLSEQLPLKTIGIVLTDDYYTYLGIASLFEDGKCFMFPLNG
EYNSCQISASEDIIIIIDGRVLIQGVWKGFKALMQHYPHARRIWLTRRDIGKLYPHGC
DRDPDIDPDLAKPVFIEHFIKYACANEVAVGELAPLTKKEEELLWHFLYKKSMSQIAS
SYGMSRKTLYIHRLRICRKYGFKRFFHLLFIYQRSRHIFASKICRVDKNADQA"
misc_feature 374252..374446
/locus_tag="SeAg_B0380"
/note="DNA-binding HTH domain-containing proteins
[Transcription]; Region: CsgD; COG2771"
/db_xref="CDD:32632"
misc_feature order(374267..374275,374312..374320,374342..374347,
374351..374356,374360..374374,374405..374407)
/locus_tag="SeAg_B0380"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(374303..374305,374312..374314,374405..374413,
374420..374422)
/locus_tag="SeAg_B0380"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 374550..374729
/locus_tag="SeAg_B0381"
/db_xref="GeneID:6795192"
CDS 374550..374729
/locus_tag="SeAg_B0381"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145326.1"
/db_xref="GI:197248867"
/db_xref="GeneID:6795192"
/translation="MLLAIKILISALDEKTKIRLREHIEKTEQEIASSIHDSIMTETF
LQQMKDIRYILNIVP"
gene 374763..375146
/locus_tag="SeAg_B0382"
/db_xref="GeneID:6795021"
CDS 374763..375146
/locus_tag="SeAg_B0382"
/codon_start=1
/transl_table=11
/product="cytochrome c type biogenesis protein CycH"
/protein_id="YP_002145327.1"
/db_xref="GI:197248184"
/db_xref="GeneID:6795021"
/translation="MINRPGISMKKILVCFVGLALTACSANSLNYGAEQVRVMTSEPG
KECSYLGDITGSQGNFFTGGWTSNSNLETGARNDLKNKAYKMGGNTVVLLTQRAGQTG
SSWHGSGSSKQTNVTLSGNVYRCPR"
misc_feature 374838..375137
/locus_tag="SeAg_B0382"
/note="Domain of unknown function (DUF4156); Region:
DUF4156; pfam13698"
/db_xref="CDD:205873"
gene complement(375216..376673)
/locus_tag="SeAg_B0383"
/db_xref="GeneID:6793124"
CDS complement(375216..376673)
/locus_tag="SeAg_B0383"
/note="identified by match to protein family HMM PF02321;
match to protein family HMM TIGR01845"
/codon_start=1
/transl_table=11
/product="outer membrane protein OprM"
/protein_id="YP_002145328.1"
/db_xref="GI:197249851"
/db_xref="GeneID:6793124"
/translation="MKITFTGYRQTATLATLAFVTTLAGCTMAPKHERPASPTAMVYP
YATSTVSGAPDAADIGWRDFFHDPLLQELIAIALRNNRDLRKAGLNVEAARALYRIQR
AEMLPTLGIATAMDAGRTPADLSVTDEPEINRRYEMAGATTAWELDLWGRVRSLSDQA
LAAYMALDETYIAARMSLVSEVASAWLTLRADRELLRLTEDTLAAQKSSYTLTTQLAR
TGNATQLDLRMAEIALRSAEINRAAYTRQLARDRNALELLLGQPLTPELSRRLNEAVT
LTEGAIPTTLPGGLPSDLLVRRPDIRAAEYRLRGANARIGAARAAFFPTISLTGTAGT
ASASLSGLFEPGSGSWRFLPQITLPLFHGGALRADLDRAHVQKQIEIASYENVIQQAF
RDVADGLAGQRTLNDQVQSEQRAVEASQIAYELAGLRFQEGVDDYLTLLDTHRMLYGA
QQRLVRTRLMQQLNIINLYKALGGGWREYSEKKQG"
misc_feature complement(375249..376601)
/locus_tag="SeAg_B0383"
/note="efflux transporter, outer membrane factor (OMF)
lipoprotein, NodT family; Region: outer_NodT; TIGR01845"
/db_xref="CDD:162557"
gene complement(376690..379857)
/locus_tag="SeAg_B0384"
/db_xref="GeneID:6793044"
CDS complement(376690..379857)
/locus_tag="SeAg_B0384"
/note="identified by match to protein family HMM PF00873;
match to protein family HMM TIGR00915"
/codon_start=1
/transl_table=11
/product="OqxB"
/protein_id="YP_002145329.1"
/db_xref="GI:197249206"
/db_xref="GeneID:6793044"
/translation="MKFTHFFIARPIFAIVLSLLMLLAGAIAFLKLPLSEYPAVTPPT
VQVSASYPGANPQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDP
DMAQIQVQNRVSRALPRLPEEVQRIGIVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFA
IRQVRDELARLPGVGDVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVA
AGSVGQQPEASAAFQMTVNTLGRLTSEEQFGEIVVKIGADGEVTRLRDVARVTLGADA
YTLRSLLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVF
VRASLQSVAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSL
NTLSLFGLVLSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVL
TAVFIPSAFLAGLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKAD
WLTRLMGTVTGGFFHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFH
QVPNGFVPAQDKYYLVGIAQLPSGASLDRTEAVVKQMSAIALAEPGVESVVVFPGLSV
NGPVNVPNSALMFAMLKPFDEREDPSLSANAIAGKLMHKFSHIPDGFIGIFPPPPVPG
LGATGGFKLQIEDRAELGFEAMTKVQSEIMSKAMQTPELANMLASFQTNAPQLQVDID
RVKAKSMGVSLTDIFETLQINLGSLYVNDFNRFGRTWRVMAQADAPFRMQQEDIGLLK
VRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSSGQATDAIEKIV
RETLPEGMVFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQYNSWSLPFAVLLIA
PMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFARAKEHDGADPLTAV
LEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGMLGVTLFGLLLT
PVFYVVVRRMALKRENRVDSHDQQA"
misc_feature complement(376744..379842)
/locus_tag="SeAg_B0384"
/note="AcrB/AcrD/AcrF family; Region: ACR_tran; pfam00873"
/db_xref="CDD:201483"
gene complement(379854..381080)
/locus_tag="SeAg_B0385"
/db_xref="GeneID:6795965"
CDS complement(379854..381080)
/locus_tag="SeAg_B0385"
/note="identified by match to protein family HMM PF00529;
match to protein family HMM TIGR01730"
/codon_start=1
/transl_table=11
/product="auxiliary transport protein, membrane fusion
protein (MFP) family"
/protein_id="YP_002145330.1"
/db_xref="GI:197247802"
/db_xref="GeneID:6795965"
/translation="MRRTFKIMLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPP
PSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAVSVPEGRLVSRGQLLFQ
IDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNAR
QAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVS
HNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRST
GTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYVLIVGKEN
QVEYRPVELGQMVDGLRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTA
TLTKADGDSAPKAVRQ"
misc_feature complement(379947..380930)
/locus_tag="SeAg_B0385"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature complement(380724..380870)
/locus_tag="SeAg_B0385"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature complement(380196..380537)
/locus_tag="SeAg_B0385"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 381224..381337
/locus_tag="SeAg_B0386"
/db_xref="GeneID:6793294"
CDS 381224..381337
/locus_tag="SeAg_B0386"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145331.1"
/db_xref="GI:197248485"
/db_xref="GeneID:6793294"
/translation="MSRIILFYEPSHILAEPCSLNTLDLPTMASFRLSDTE"
gene 381357..383645
/locus_tag="SeAg_B0387"
/db_xref="GeneID:6794555"
CDS 381357..383645
/locus_tag="SeAg_B0387"
/EC_number="3.6.3.4"
/note="identified by match to protein family HMM PF00122;
match to protein family HMM PF00403; match to protein
family HMM PF00702; match to protein family HMM TIGR01494;
match to protein family HMM TIGR01511; match to protein
family HMM TIGR01525"
/codon_start=1
/transl_table=11
/product="copper-translocating P-type ATPase"
/protein_id="YP_002145332.1"
/db_xref="GI:197247863"
/db_xref="GeneID:6794555"
/translation="MSQSENRHDTISLLIEGMTCASCVARVEKGIKAVPGVTDATVNL
ATERATVRGTASAEAVIAAIEKTGYEARPIETAGQGEDDSEEKKEAERVRLKRDLILA
SVLALPVFVLEMGSHLIPGMHEWVIKTIGLQQSWYWQFALTLLVLTIPGRRFYLKGFP
ALARLAPDMNSLVAVGTAAAFGYSLVATFTPDLLPEGTVNVYYEAAAVIVALILLGRF
LEARAKGRTSEAIKRLVGLQARVAHVLREGRIVDIPVDEVVLGDCVEVRPGERIPVDG
EVTEGRSFVDESMITGEPIPVEKSAGSAVVGGTVNQKGALTLRATAVGGQTMLAQIIR
LVEQAQGSKLPIQAVVDKVTLWFVPMVMLIAALTFVVWLAFGPSPALTFALINGVAVL
IIACPCAMGLATPTSIMVGTGRGAEMGVLFRKGEALQLLKDAKVVAVDKTGTLTEGRP
VLTDLDVASGFERREVLAKVAAVESRSEHPIARAIVVSAEEEGIALPGMNGFESVTGM
GVYATVAGTRVDVGADRYMREIGVDISGFATTAERLGQEGKSPLYAAIDGQLAAIIAV
ADPIKPSTPAAINALHQLGIKVAMITGDNARTAQAIARQLGIDDVVAEVLPEGKVEAI
RRLKAAYGQVAFVGDGINDAPALAESDVGLAIGTGTDVAVESADVVLMSGNLQGVPNA
IALSKATIRNIHQNLFWAFAYNTALIPVAAGALFPVWGILLSPVFAAGAMAMSSVFVL
GNALRLRRFRAPMATPSDTSTT"
misc_feature 381384..383612
/locus_tag="SeAg_B0387"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature 381390..381572
/locus_tag="SeAg_B0387"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(381408..381416,381423..381425)
/locus_tag="SeAg_B0387"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 382002..382643
/locus_tag="SeAg_B0387"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature 383022..383297
/locus_tag="SeAg_B0387"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 383130..383132
/locus_tag="SeAg_B0387"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 383657..384121
/gene="cueR"
/locus_tag="SeAg_B0388"
/db_xref="GeneID:6794808"
CDS 383657..384121
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="identified by match to protein family HMM PF00376;
match to protein family HMM PF09278; match to protein
family HMM TIGR02044"
/codon_start=1
/transl_table=11
/product="Cu(I)-responsive transcriptional regulator"
/protein_id="YP_002145333.1"
/db_xref="GI:197247472"
/db_xref="GeneID:6794808"
/translation="MNIGKAAKASKVSAKMIRYYEQIGLIPAASRTDSGYRAYTQADV
NQLHFIRRARDLGFSVAEISDLLNLWNNQSRQSADVKRLAQTHIDELDRRIQNMQHMA
QTLKALIHCCAGDALPDCPILHTLGQPDDSEPEARTGAVLRRPRRHGLAKRL"
misc_feature 383657..384034
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="Cu(I)-responsive transcriptional regulator; Region:
CueR; TIGR02044"
/db_xref="CDD:131099"
misc_feature 383657..384034
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="Helix-Turn-Helix DNA binding domain of CueR-like
transcription regulators; Region: HTH_CueR; cd01108"
/db_xref="CDD:133383"
misc_feature order(383660..383668,383708..383710,383759..383767)
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133383"
misc_feature order(383801..383803,383810..383812,383822..383827,
383852..383854,383864..383866,383885..383890,
383897..383899,383906..383908,383918..383920,
383936..383938,383948..383950,383957..383962,
383981..383983,383996..384010,384014..384016,
384020..384022,384029..384034)
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133383"
misc_feature order(383885..383887,383990..383992,384014..384016)
/gene="cueR"
/locus_tag="SeAg_B0388"
/note="copper binding site [ion binding]; other site"
/db_xref="CDD:133383"
gene 384199..384393
/locus_tag="SeAg_B0389"
/db_xref="GeneID:6796137"
CDS 384199..384393
/locus_tag="SeAg_B0389"
/note="identified by match to protein family HMM PF00403"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145334.1"
/db_xref="GI:197249541"
/db_xref="GeneID:6796137"
/translation="MQFHIDDMTCGGCASTVKKTILTLDANATVRTDPATRLVDVETS
LSAEQIAAALQKAGFPPRER"
misc_feature 384202..384384
/locus_tag="SeAg_B0389"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(384220..384228,384235..384237)
/locus_tag="SeAg_B0389"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
gene complement(384437..384550)
/locus_tag="SeAg_B0390"
/db_xref="GeneID:6792883"
CDS complement(384437..384550)
/locus_tag="SeAg_B0390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145335.1"
/db_xref="GI:197248923"
/db_xref="GeneID:6792883"
/translation="MLAKIDKSLHIINKAYWHMICHIFYGDYLTQRKAKRG"
gene 384685..385938
/locus_tag="SeAg_B0391"
/db_xref="GeneID:6792612"
CDS 384685..385938
/locus_tag="SeAg_B0391"
/note="identified by match to protein family HMM PF00083;
match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily protein"
/protein_id="YP_002145336.1"
/db_xref="GI:197249958"
/db_xref="GeneID:6792612"
/translation="MYTPLNWTTTQRHVAFASFTSWMLDAFDFFILVFVLSDLAEWFH
ASVSDVSIAIMLTLAVRPIGALLFGRMAEKYGRRPILMLNILFFTVFELLSAWSPTFM
AFLIFRVMYGVAMGGIWGVASSLAMETIPDRSRGLMSGIFQAGYPCGYLFASVIFGLF
YSMVGWRGMFLIGALPVVLLPYIWFKVPESPVWLAARARKENTALLPVLRKQWKLCLY
LVLVMAFFNFFSHGTQDLYPTFLKMQHGFDPHLISIIAIFYNIAAMLGGIFYGTLSER
IGRKKAIMIAAFLALPVLPLWAFSSGSFTIGLGAFLMQFMVQGAWGVVPTWLNELVPA
NARAVLPGFVYQLGNLLASVNATLQARIAETHGGNYGLAMAIVAGAVAILICVFVAFG
RETRGVVISGTDSDALPESAISHRT"
misc_feature 384706..385827
/locus_tag="SeAg_B0391"
/note="putative sialic acid transporter; Region: 2A0112;
TIGR00891"
/db_xref="CDD:162092"
misc_feature 384730..385854
/locus_tag="SeAg_B0391"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(384769..384771,384778..384786,384790..384795,
384844..384846,384853..384858,384865..384867,
384877..384882,384886..384891,385027..385032,
385039..385044,385051..385056,385063..385065,
385099..385104,385111..385116,385132..385134,
385363..385365,385372..385377,385384..385389,
385396..385398,385438..385440,385450..385452,
385462..385464,385471..385473,385483..385485,
385624..385626,385633..385638,385645..385647,
385657..385662,385669..385671,385702..385707,
385714..385719,385726..385731,385738..385740)
/locus_tag="SeAg_B0391"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 386127..388085
/locus_tag="SeAg_B0392"
/db_xref="GeneID:6796899"
CDS 386127..388085
/locus_tag="SeAg_B0392"
/EC_number="2.1.1.72"
/note="identified by match to protein family HMM PF01555"
/codon_start=1
/transl_table=11
/product="type III restriction-modification system StyLTI
enzyme mod"
/protein_id="YP_002145337.1"
/db_xref="GI:197250580"
/db_xref="GeneID:6796899"
/translation="MLKDNQKHNESVAPNSAFLSELQRALPEFFIADRYNEQGELIAK
GGFDLAKFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLAEN
KNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDHFEYSDRALQD
MFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLK
LMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAKTGQGALRLEPLSKEY
IQKSYKEPTEQFPEGKWRPVPLTVSKGLSGGGYTYKITTPNGTVHERLWAYPEASYQK
LVADNLVYFGKDNGGIPQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFD
TPKPTALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL
SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATPTQQTLDDL
DSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGGASGEETLLTTWLVADG
YKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGTEQTRDLLNHIGTHQLPVQTIVIYG
YSFDLESIRELEIGLKQLDQKVNLVKRY"
misc_feature 386136..388004
/locus_tag="SeAg_B0392"
/note="Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair]; Region: COG2189"
/db_xref="CDD:32372"
misc_feature 386436..>386564
/locus_tag="SeAg_B0392"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:214256"
misc_feature 386511..387467
/locus_tag="SeAg_B0392"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene 388098..391067
/locus_tag="SeAg_B0393"
/db_xref="GeneID:6794497"
CDS 388098..391067
/locus_tag="SeAg_B0393"
/EC_number="3.1.21.5"
/note="identified by match to protein family HMM PF04851;
match to protein family HMM PF08774"
/codon_start=1
/transl_table=11
/product="type III restriction-modification system StyLTI
enzyme res"
/protein_id="YP_002145338.1"
/db_xref="GI:197248044"
/db_xref="GeneID:6794497"
/translation="MNILLEELPHQEQALAAILASFTGIDHAQADHNHYANPLIKERY
DDKANIDVKMETGTGKTYVYTRLMYELHQNYGLFKFVLVVPTPAIKEGARNFITSDYA
RQHFSQFYENTRMELCTINAGDFKVKSGRKNFPAQLLSFTDASRRDSHTIQVLLINAQ
MLNSASMTRDDYDQTLLGGLTSPVKGLQMTRPVVIIDEPHRFARDNKFYRAIQAIQPQ
MIVRFGATFPDIVEGKGKNKCVRKDYYRRQPQFDLNAVDSFNDGLVKGIDIYYPNLPE
EQANNRYIVDSVTAKKLILRRGSKIAEVGVGENLADVDAGFEGSIEYAGSKMLSNDLE
LEAGMALVPGTFGASYQELIIQDAIDKHFDTEQANFLRSNEPENNAPRIKTLSLFFID
SIKSYRDDEGWLKVTFERLLKKKLTQLIDDYQRKTLPREVEYLSFLQATLASLHSDNQ
NVHAGYFGEDRGSGDEAIQAEVDDILKNKEKLLSFSDHHGNWETRRFLFSKWTLREGW
DNPNVFVIAKLRSSGSESSKIQEVGRGLRLPVDENGHRVHQEEWPSRLSFLIGYDEKA
FASMLVDEINRDSKVQLNEQKLDEAMITLIVTERQKVDPAFTELRLLEDLDDKKLINR
SNEFKPSVTLNGETKSGFAWLLEFYPELTQARVRADRIRDNKPASRLRVRLRKENWEQ
LSSIWEQFSRRYMLQFERSGASLEQIAAEVLRDPALYIRQKPSQVQQRLVSNEDNGRF
EVAQREGELAASEFMAGMKYGHFLKQLALRTSLPVNVLHPVLMAMLRDVLHGDSRYLS
EISLDNMTRALQTRINAHFAQRHDYLPLDFQASTSVFDSTARQFREEISAEIVGKNVD
ENAIDDPRSLYQIPPLRYDSVDPELPLLKYDYPQQVSVFGKLPKRAIQIPKYTGGSTT
PDFVYRIERQDADSVYLLVETKAENMRVGDQVILDAQRKFFDMLRRQNINVEFADATS
APAVFSTINGLIEGKAN"
misc_feature 388098..391058
/locus_tag="SeAg_B0393"
/note="type III restriction-modification system StyLTI
enzyme res; Provisional; Region: PRK15483"
/db_xref="CDD:185380"
misc_feature 388107..>388388
/locus_tag="SeAg_B0393"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
misc_feature <388674..388784
/locus_tag="SeAg_B0393"
/note="Type III restriction enzyme, res subunit; Region:
ResIII; pfam04851"
/db_xref="CDD:203105"
misc_feature 390702..391010
/locus_tag="SeAg_B0393"
/note="VRR-NUC domain; Region: VRR_NUC; pfam08774"
/db_xref="CDD:204059"
gene 391562..392965
/gene="cioA"
/locus_tag="SeAg_B0394"
/db_xref="GeneID:6795162"
CDS 391562..392965
/gene="cioA"
/locus_tag="SeAg_B0394"
/note="identified by match to protein family HMM PF01654"
/codon_start=1
/transl_table=11
/product="cyanide-insensitive oxidase CioA"
/protein_id="YP_002145339.1"
/db_xref="GI:197248698"
/db_xref="GeneID:6795162"
/translation="MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKT
RNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL
TAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI
HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTLAIRRM
FSMALWMAVVVAPVQALIGDMHGLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPD
MEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTVVFWSFRLMVGMGVL
MIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLL
RTRDAVSAHSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRP
ARPISAVGESLEQEKRE"
misc_feature 391583..392875
/gene="cioA"
/locus_tag="SeAg_B0394"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:201906"
gene 392962..393972
/gene="cydB"
/locus_tag="SeAg_B0395"
/db_xref="GeneID:6795585"
CDS 392962..393972
/gene="cydB"
/locus_tag="SeAg_B0395"
/EC_number="1.10.3.-"
/note="identified by match to protein family HMM PF02322;
match to protein family HMM TIGR00203"
/codon_start=1
/transl_table=11
/product="cytochrome D ubiquinol oxidase subunit II"
/protein_id="YP_002145340.1"
/db_xref="GI:197251858"
/db_xref="GeneID:6795585"
/translation="MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRD
VMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFE
FRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFN
LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHD
DIAERWFTLPNLYYFLPVPVLVLAFSVWLWRSVKKPESHARPFILTLGLIFLGFSGLG
ISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEG
YH"
misc_feature 392971..393939
/gene="cydB"
/locus_tag="SeAg_B0395"
/note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
pfam02322"
/db_xref="CDD:190279"
misc_feature 392974..>393531
/gene="cydB"
/locus_tag="SeAg_B0395"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
misc_feature <393820..393948
/gene="cydB"
/locus_tag="SeAg_B0395"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene 393972..394103
/locus_tag="SeAg_B0396"
/db_xref="GeneID:6796039"
CDS 393972..394103
/locus_tag="SeAg_B0396"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145341.1"
/db_xref="GI:197247359"
/db_xref="GeneID:6796039"
/translation="MVKVKKWSRRVVWMVAIWCASVLLLAGVGMLFRLLMTSAGFRS"
gene 394310..395314
/locus_tag="SeAg_B0397"
/db_xref="GeneID:6793903"
CDS 394310..395314
/locus_tag="SeAg_B0397"
/note="identified by match to protein family HMM PF00165"
/codon_start=1
/transl_table=11
/product="araC family transcriptional regulator"
/protein_id="YP_002145342.1"
/db_xref="GI:197250738"
/db_xref="GeneID:6793903"
/translation="MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQ
SSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQ
TFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWEHR
AASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGL
PVTGEYQRLELIRRLLEQTPEKAYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRD
CRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPGELRDASLTASRHCA
"
misc_feature 395036..395278
/locus_tag="SeAg_B0397"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
gene 395472..397568
/locus_tag="SeAg_B0398"
/db_xref="GeneID:6793868"
CDS 395472..397568
/locus_tag="SeAg_B0398"
/note="identified by match to protein family HMM PF00593;
match to protein family HMM PF07715; match to protein
family HMM TIGR01783"
/codon_start=1
/transl_table=11
/product="ferrichrome-iron receptor"
/protein_id="YP_002145343.1"
/db_xref="GI:197251193"
/db_xref="GeneID:6793868"
/translation="MFMFATTRMALLIGGAIGGATFPLFAQETTKNDTVIVTSPVQSG
ATKLATPDIETPQSVSIITRQQFEEQGATSVRQAVSYTPGVYSNQIGASNRFDYIVLR
GFSDGSLDNVYLDGLKMMGDTNSHSSLVVDPWFLEDIEVVRGPASVLYGRSSPGGIVA
LTSRKPAFDAGGEVKLFAGNNNQRGAAFDVTGPLDDNERVAARLSGMTRYADSQFTPL
KEERYALMPSLTWRITDRTRLDLMAYLHRDPQGGSHSGLPYQGTVVPYNGRKISNTFF
EGEDDYDKYDRRENMVGYNIEHLFDNGWSVRQKLRYLHTKVTLNQVYAAGWLNETALN
RGYSGSGEKMSAIALDNQLDGSVDTGAINHRLLVGIDYQDRSNHTTGYYGAFPPIDAF
NPVYGAQPDYITLYSREKHKLRQTGYYLQDQMSWDRWRFTLGGRYDRVSVSNIDKLHD
SRSDLDKNNVSTRAALLYLFDNGVAPYLSYSTAFTPTSFADENGNVLEPMKGKQWEAG
VKYEPLGGNSQFSAAVYRINQTNIATKEEPTDPYRSIGEIESKGVELEAISHLSDSVR
LQAAYTYTDIRYKKSSPQEQGKRAVYAPRNQASAWLSYDVKSGLLEGLTLGSGIRYVN
GVTSDRLNTHTLPSYTLVDMVVGYDLSSIGLNGLSAQLNVNNLTDKRYVAACNSLSYC
YFGAERSIVGSVSWAF"
misc_feature 395604..397565
/locus_tag="SeAg_B0398"
/note="ferrichrome outer membrane transporter;
Provisional; Region: PRK10044"
/db_xref="CDD:182206"
misc_feature 395643..397565
/locus_tag="SeAg_B0398"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature order(395643..395672,395700..395729,395766..395783,
395805..395828,395868..395900,395934..395960)
/locus_tag="SeAg_B0398"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature order(396420..396422,396495..396497)
/locus_tag="SeAg_B0398"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene complement(397609..398241)
/locus_tag="SeAg_B0399"
/db_xref="GeneID:6793519"
CDS complement(397609..398241)
/locus_tag="SeAg_B0399"
/note="identified by match to protein family HMM PF01810;
match to protein family HMM TIGR00949"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_002145344.1"
/db_xref="GI:197249347"
/db_xref="GeneID:6793519"
/translation="MEPFHAVVLTVSLFVLTFFNPGANLFVVVQTSLASGRRAGVITG
LGVATGDAFYSGLGLFGLATLITQCEAVFSLIKIVGGAYLLWFAWNSIRHQATPQMST
LQTPIAAPWTIFFRRGLMTDLSNPQTVLFFISIFSVTLSAETPTWARLMAWAGIVLSS
VIWRIFLSQAFSLPAVRRAYGRIQRIASRVIGAIIGMFALRLLYEGVTYR"
misc_feature complement(397636..398184)
/locus_tag="SeAg_B0399"
/note="The Resistance to Homoserine/Threonine (RhtB)
Family protein; Region: 2A76; TIGR00949"
/db_xref="CDD:162127"
gene 398473..398748
/locus_tag="SeAg_B0400"
/db_xref="GeneID:6795352"
CDS 398473..398748
/locus_tag="SeAg_B0400"
/note="identified by match to protein family HMM PF07338"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145345.1"
/db_xref="GI:197249432"
/db_xref="GeneID:6795352"
/translation="MKTGYKVMLGALAFVVTNVYAAEIMKKTDFDKVASEYTKIGTIS
TTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK"
misc_feature 398473..398745
/locus_tag="SeAg_B0400"
/note="hypothetical protein; Provisional; Region:
PRK09929"
/db_xref="CDD:182151"
gene complement(398884..400509)
/gene="prpR"
/locus_tag="SeAg_B0401"
/db_xref="GeneID:6793343"
CDS complement(398884..400509)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="identified by match to protein family HMM PF00158;
match to protein family HMM PF02954; match to protein
family HMM PF06506; match to protein family HMM TIGR02329"
/codon_start=1
/transl_table=11
/product="propionate catabolism operon regulatory protein
PrpR"
/protein_id="YP_002145346.1"
/db_xref="GI:197251644"
/db_xref="GeneID:6793343"
/translation="MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITP
IQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAK
AGKLTSSIGIVTYQETIPALLAFQKTFHLCLEQRSYVTEEDARGQINELKANGIEAVV
GAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTRRQRVDYPSGKGLQTRYEL
GDIRGQSPQMEQLRQTITLYARSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQNK
PSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM
PLPLQTRLLRVLEEKAVTRVGGHQPIPVEVRVISATHCDLDREIMQGRFRPDLFYRLS
ILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGN
IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDAHTLQDVLAR
FKGDKSATARYLGISRTTLWRRLKAGAKDQSGN"
misc_feature complement(398896..400509)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="propionate catabolism operon regulatory protein
PrpR; Provisional; Region: PRK15424"
/db_xref="CDD:185322"
misc_feature complement(399910..400419)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="Propionate catabolism activator; Region: PrpR_N;
pfam06506"
/db_xref="CDD:148236"
misc_feature complement(399310..399843)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(399742..399765)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(399397..399399,399523..399525,
399739..399762))
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(399520..399537)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(399340..399342)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(398914..>399006)
/gene="prpR"
/locus_tag="SeAg_B0401"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 400775..401662
/gene="prpB"
/locus_tag="SeAg_B0402"
/db_xref="GeneID:6796374"
CDS 400775..401662
/gene="prpB"
/locus_tag="SeAg_B0402"
/EC_number="4.1.3.30"
/note="catalyzes the formation of pyruvate and succinate
from 2-methylisocitrate"
/codon_start=1
/transl_table=11
/product="2-methylisocitrate lyase"
/protein_id="YP_002145347.1"
/db_xref="GI:197250852"
/db_xref="GeneID:6796374"
/translation="MSLHSPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYL
SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVK
SIAKAGAAALHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTDPNFVIMARTD
ALAVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRQFADVAQVPILANITEFGATP
LFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYES
INYYQFEEKLDALYRNKKS"
misc_feature 400787..401647
/gene="prpB"
/locus_tag="SeAg_B0402"
/note="PEP phosphonomutase and related enzymes
[Carbohydrate transport and metabolism]; Region: PrpB;
COG2513"
/db_xref="CDD:32583"
misc_feature 400802..401527
/gene="prpB"
/locus_tag="SeAg_B0402"
/note="Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate...; Region:
ICL_PEPM; cd00377"
/db_xref="CDD:119340"
misc_feature order(400808..400810,400829..400831,400835..400846,
400850..400864,400868..400873,400880..400882,
400886..400894,400913..400915,400925..400930,
400937..400939,400943..400945,400952..400963,
400967..400972,400979..400984,400988..400993,
401000..401005,401045..401047,401066..401071,
401081..401083,401090..401092,401177..401182,
401189..401191,401198..401203,401210..401212,
401498..401506,401510..401518,401522..401527)
/gene="prpB"
/locus_tag="SeAg_B0402"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:119340"
misc_feature order(400901..400903,400907..400915,400946..400948,
401027..401029,401033..401035,401117..401119,
401246..401248,401336..401338,401402..401404,
401408..401410,401480..401482)
/gene="prpB"
/locus_tag="SeAg_B0402"
/note="active site"
/db_xref="CDD:119340"
misc_feature order(400946..400948,401027..401029,401033..401035,
401117..401119)
/gene="prpB"
/locus_tag="SeAg_B0402"
/note="Mg2+/Mn2+ binding site [ion binding]; other site"
/db_xref="CDD:119340"
gene 401785..402954
/gene="prpC"
/locus_tag="SeAg_B0403"
/db_xref="GeneID:6795755"
CDS 401785..402954
/gene="prpC"
/locus_tag="SeAg_B0403"
/EC_number="2.3.3.5"
/note="catalyzes the synthesis of 2-methylcitrate from
propionyl-CoA and oxaloacetate; also catalyzes the
condensation of oxaloacetate with acetyl-CoA but with a
lower specificity"
/codon_start=1
/transl_table=11
/product="methylcitrate synthase"
/protein_id="YP_002145348.1"
/db_xref="GI:197250290"
/db_xref="GeneID:6795755"
/translation="MTDTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHY
RGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPA
ASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERI
QPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSD
VYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPV
YTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNM
MGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRPFVSIDDRC"
misc_feature 401815..402948
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="Citrate synthase [Energy production and
conversion]; Region: GltA; COG0372"
/db_xref="CDD:30721"
misc_feature 401842..402939
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="Subgroup of Escherichia coli (Ec) 2-methylcitrate
synthase (2MCS)_like. 2MCS catalyzes the condensation of
propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form
2-methylcitrate and coenzyme A (CoA) during propionate
metabolism. Citrate synthase (CS)...; Region:
Ec2MCS_like_1; cd06117"
/db_xref="CDD:99870"
misc_feature order(401842..401850,401857..401871,402055..402060,
402067..402072,402094..402096,402106..402108,
402118..402120,402127..402129,402271..402273,
402382..402396,402403..402408,402418..402420,
402427..402438,402445..402447,402466..402471,
402475..402486,402607..402609,402880..402912)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99870"
misc_feature order(401851..401853,402382..402384,402391..402393,
402484..402492,402496..402498,402505..402507,
402586..402609,402616..402618,402631..402633,
402736..402738,402742..402744,402751..402753,
402757..402759,402820..402822,402832..402834,
402880..402882,402889..402891)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="active site"
/db_xref="CDD:99870"
misc_feature order(401851..401853,402382..402384,402391..402393,
402484..402489,402586..402591,402595..402609,
402631..402633,402751..402753,402832..402834)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="citrylCoA binding site [chemical binding]; other
site"
/db_xref="CDD:99870"
misc_feature order(402382..402384,402391..402393,402487..402492,
402604..402606,402631..402633,402757..402759,
402820..402822,402832..402834,402889..402891)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="oxalacetate/citrate binding site [chemical
binding]; other site"
/db_xref="CDD:99870"
misc_feature order(402484..402489,402496..402498,402505..402507,
402586..402603,402607..402609,402616..402618,
402736..402738,402742..402744,402751..402753,
402757..402759,402880..402882)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="coenzyme A binding site [chemical binding]; other
site"
/db_xref="CDD:99870"
misc_feature order(402487..402489,402604..402606,402757..402759)
/gene="prpC"
/locus_tag="SeAg_B0403"
/note="catalytic triad [active]"
/db_xref="CDD:99870"
gene 402994..404445
/gene="prpD"
/locus_tag="SeAg_B0404"
/db_xref="GeneID:6795419"
CDS 402994..404445
/gene="prpD"
/locus_tag="SeAg_B0404"
/EC_number="4.2.1.79"
/note="'functions in propionate metabolism; involved in
isomerization of (2S,3S)-methylcitrate to
(2R,3S)-methylisocitrate; also encodes minor aconitase or
dehydratase activity; aconitase C'"
/codon_start=1
/transl_table=11
/product="2-methylcitrate dehydratase"
/protein_id="YP_002145349.1"
/db_xref="GI:197250681"
/db_xref="GeneID:6795419"
/translation="MSTQELNIRPEFDREIVDIVDYVMNYDITSKVAYDTAHYCLLDT
LGCGLEALEYPACKKLLGPIVPGTVVPNGARVPGTQFQLDPVQAAFNIGAMIRWLDFN
DTWLAAEWGHPSDNLGGILATADWLSRNAVAAGKAPLTMKQVLSGMIKAHEIQGCIAL
ENAFNRVGLDHVLLVKVASTAVVAEMLGLTRDEILNAVSLAWVDGQSLRTYRHAPNTG
TRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAKTWGFYDVSFKGETFRFQRPYGSY
VMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACLRIIDK
KGPLNNPADRDHCIQYMVAVPLLFGRLTAADYEDEVAQDKRIDALREKIVCYEDPAFT
ADYHDPEKRAIGNAITVEFTDGSRFGEVVVEYPIGHARRRADGIPKLIEKFKINLARQ
FPTRQQQRILDVSLDRARLEQMPVNEYLDLYVI"
misc_feature 402994..404442
/gene="prpD"
/locus_tag="SeAg_B0404"
/note="2-methylcitrate dehydratase; Provisional; Region:
prpD; PRK09425"
/db_xref="CDD:181845"
gene 404486..406372
/gene="prpE"
/locus_tag="SeAg_B0405"
/db_xref="GeneID:6793809"
CDS 404486..406372
/gene="prpE"
/locus_tag="SeAg_B0405"
/EC_number="6.2.1.17"
/note="'catalyzes the formation of propionyl-CoA using
propionate as a substrate; PrpE from Ralstonia
solanacearum can produce acetyl-, propionyl-, butyryl- and
acrylyl-coenzyme A, and Salmonella enterica produces
propionyl- and butyryl-coenzyme A; not expressed in
Escherichia coli when grown on propionate/minimal media;
ATP-dependent'"
/codon_start=1
/transl_table=11
/product="propionyl-CoA synthetase"
/protein_id="YP_002145350.1"
/db_xref="GI:197249636"
/db_xref="GeneID:6793809"
/translation="MSFSEFYQRSINEPEAFWAEQARRIDWRQPFTQTLDHSRPPFAR
WFCGGTTNLCHNAVDRWLDKQPEALALIAVSSETDEERTFTFSQLHDEVNIVAAMLLS
LGVQRGDRVLVYMPMIAEAQITLLACARIGAIHSVVFGGFASHSVAARIDDARPALIV
SADAGARGGKILPYKKLLDDAIAQAQHQPKHVLLVDRGLAKMAWVDGRDLDFATLRQQ
HLGASVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGGV
FFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTYPDCGVWWKIVEKYQVNRMFSAP
TAIRVLKKFPTAQIRNHDLSSLEALYLAGEPLDEPTASWVTETLGVPVIDNYWQTESG
WPIMALARALDDRPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEGPLPPGC
IQSIWGDDARFVKTYWSLFNRQVYATFDWGIRDAEGYYFILGRTDDVINIAGHRLGTR
EIEESISSYPNVAEVAVVGIKDALKGQVAVAFVIPKQSDTLADREAARDEENAIMALV
DNQIGHFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLQQIRQ
AIEE"
misc_feature 404486..406369
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="propionyl-CoA synthetase; Provisional; Region:
prpE; PRK10524"
/db_xref="CDD:182517"
misc_feature 404519..406351
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="Adenylate forming domain, Class I; Region:
AFD_class_I; cl17068"
/db_xref="CDD:213459"
misc_feature order(405194..405196,405203..405220,405224..405229)
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213270"
misc_feature order(405203..405205,405569..405574,405635..405652,
405917..405919,405953..405955,405962..405964,
405995..405997,406259..406261)
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213270"
misc_feature order(405203..405205,405326..405331,405482..405484,
405488..405493,405500..405502,405569..405574,
405635..405652,405917..405919,405953..405955,
405962..405964,405986..405997,406202..406204)
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="active site"
/db_xref="CDD:213270"
misc_feature order(405326..405328,405488..405493,405500..405502,
405569..405571,405986..405994,406184..406186,
406202..406204)
/gene="prpE"
/locus_tag="SeAg_B0405"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213270"
gene complement(406476..407450)
/gene="hemB"
/locus_tag="SeAg_B0406"
/db_xref="GeneID:6792737"
CDS complement(406476..407450)
/gene="hemB"
/locus_tag="SeAg_B0406"
/EC_number="4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_002145351.1"
/db_xref="GI:197248866"
/db_xref="GeneID:6792737"
/translation="MTDLIHRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDY
KAIDAMPGVMRIPEKQLAREIERIANAGIRSVMTFGISHHTDDTGSDTWKEDGLVARM
SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVIAAAAGAD
FIAPSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKT
YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLREIRERTELPLGAYQVSGEY
AMIKFAAMAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKNILR"
misc_feature complement(406494..407426)
/gene="hemB"
/locus_tag="SeAg_B0406"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region: ALAD_PBGS;
cd00384"
/db_xref="CDD:88598"
misc_feature complement(order(406542..406544,406551..406553,
406563..406565,406617..406619,406689..406703,
406755..406760,406767..406769,406785..406787,
406794..406796,406851..406859,406944..406949,
407028..407033,407298..407300,407307..407309,
407379..407381,407412..407417,407424..407426))
/gene="hemB"
/locus_tag="SeAg_B0406"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88598"
misc_feature complement(order(406515..406517,406632..406634,
406641..406643,406710..406712,406791..406793,
406803..406805,406821..406823,406836..406841,
406848..406850,406866..406868,406956..406958,
407061..407063,407085..407087,407091..407093,
407097..407099))
/gene="hemB"
/locus_tag="SeAg_B0406"
/note="active site"
/db_xref="CDD:88598"
misc_feature complement(order(406710..406712,406866..406868))
/gene="hemB"
/locus_tag="SeAg_B0406"
/note="Schiff base residues; other site"
/db_xref="CDD:88598"
gene 407670..407789
/locus_tag="SeAg_B0407"
/db_xref="GeneID:6795020"
CDS 407670..407789
/locus_tag="SeAg_B0407"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145352.1"
/db_xref="GI:197247517"
/db_xref="GeneID:6795020"
/translation="MWVLTLFIFILFFFNPYLSYMYFVFLFSCKVMKKNAFQL"
gene complement(407780..407896)
/locus_tag="SeAg_B0408"
/db_xref="GeneID:6793160"
CDS complement(407780..407896)
/locus_tag="SeAg_B0408"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145353.1"
/db_xref="GI:197248151"
/db_xref="GeneID:6793160"
/translation="MFSKKDYAASLLKGSIILYPQSGFGHELKRRNKSKLYN"
gene 407963..410935
/locus_tag="SeAg_B0409"
/db_xref="GeneID:6793091"
CDS 407963..410935
/locus_tag="SeAg_B0409"
/note="identified by match to protein family HMM PF03212;
match to protein family HMM PF03797; match to protein
family HMM TIGR01414"
/codon_start=1
/transl_table=11
/product="flagellar protein"
/protein_id="YP_002145354.2"
/db_xref="GI:449785022"
/db_xref="GeneID:6793091"
/translation="MHSWKKKLVVSQLALACTLAITSQANATTYDTWTYINNPTTALD
WANMDNPGTVDGNYVNYSGFVYYNNANGDFDQTFNGDTVNGTISTYYLNHDYATDSDN
TLNITNSNIHGSITSKLPFGYWSITPASIDPVTGAVTPRMYNGYTYDNGTTITDTNWY
DGDVFTLNISNSTIDDDYEALYFTDTYLSGDDGTTTKTTNESFYTALGVAVDLNVESN
INIANNSRVAGIALSQGDTTNTAYTSEYHQWDNNISVSNSTVTSGSEIPLEDDYDGAK
YFFGNSAEPSDYNGDGSVNDVALSFSDNADSNYSMKNNVYFDHSTLLGDVEFSSHWNN
DGEFFYSTGYDSNGDGVKDTNGGWIDDSQNVDELNITLDNGSKWIGSANITADAIAPA
NMYDVAYNSLTPGATIEANDWDRVIDNKVFQSGVFNVALNNGSEWDTVNSSIIDTLAV
NNGSQVNVTDSTLVSDTIGLTNGSSMNIGEDGQVATDHLTIDSYSTVALNDDVTHYGD
YSLYANTITVTNGGMLDVNVDQFDNGVFSTDKLELTSGNTADHNGNVVSGVFNIHSSD
YVLNADLVNDRTWDTTQANYGYGTIAMNSDGHLTINGNGDINNGDELDNSSVDNVVAA
TGNYKVRIDNATGAGSVADYKGNELIYVNDVNTDATFSAANKADLGAYTYQAKQEGNT
VVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGN
FNGDNGTINYDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQS
AYIYSSARFANNIFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLK
LGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQA
LTPYFKLAYVYDDSNNDADVNGDSIDNGVEGSAVRVGLGTQFSFTKNFSAYTDANYLG
GGDVDQDWSANVGVKYTW"
misc_feature 409526..410008
/locus_tag="SeAg_B0409"
/note="Pertactin-like passenger domains (virulence
factors) of autotransporter proteins of the type V
secretion system. Autotransporters are proteins used by
Gram-negative bacteria to transport proteins across their
outer membranes. The C-terminal (beta) domain...; Region:
PL_Passenger_AT; cd00253"
/db_xref="CDD:29327"
misc_feature 409802..410932
/locus_tag="SeAg_B0409"
/note="outer membrane autotransporter barrel domain;
Region: autotrans_barl; TIGR01414"
/db_xref="CDD:162346"
misc_feature 410141..410887
/locus_tag="SeAg_B0409"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 411021..411644
/locus_tag="SeAg_B0410"
/note="inner membrane protein; this gene contains a frame
shift which may be the result of sequencing error;
identified by match to protein family HMM PF00027"
/pseudogene="unknown"
/db_xref="GeneID:6793023"
gene complement(411688..412845)
/locus_tag="SeAg_B0411"
/db_xref="GeneID:6795560"
CDS complement(411688..412845)
/locus_tag="SeAg_B0411"
/note="this protein has no known enzymatic function"
/codon_start=1
/transl_table=11
/product="beta-lactam binding protein AmpH"
/protein_id="YP_002145355.1"
/db_xref="GI:197251539"
/db_xref="GeneID:6795560"
/translation="MKRSLLFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFY
GSGATGMALVVIDGNQRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLD
QGTVKLNDPLSKYAPPGAHVPTYQGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
REQRWNWLSTATLKVAPGSQAAYSNLAFDLLADALATASGKPYTQLFEEKITRPLGMK
DTTFTPSPDQCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYHR
SQQADRMQTLIYQRTQLKKIIGMDVPGKADALGLGWVYMAPKDGRPGIIQKTGGGGGF
ITYMAMIPQYNIGAFVVVTRSPLTRFTNMSDGINDLVTELSGNKPIAIPAS"
misc_feature complement(411712..412845)
/locus_tag="SeAg_B0411"
/note="beta-lactam binding protein AmpH; Provisional;
Region: PRK10662"
/db_xref="CDD:182627"
misc_feature complement(411769..412845)
/locus_tag="SeAg_B0411"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
gene 413192..414412
/gene="smbA"
/locus_tag="SeAg_B0412"
/db_xref="GeneID:6796751"
CDS 413192..414412
/gene="smbA"
/locus_tag="SeAg_B0412"
/note="'in Escherichia coli SbmA is involved in uptake of
microcin J25; functions along with FhuA, TonB, and ExbB/D
in this capacity; in Sinorhizobium meliloti, BacA is
essential and required for symbiosis; defects appear to
affect the cell envelope'"
/codon_start=1
/transl_table=11
/product="transporter"
/protein_id="YP_002145356.1"
/db_xref="GI:197250908"
/db_xref="GeneID:6796751"
/translation="MFKSFFPKPGPFFMSAFVWALIAVIFWQAGGGDWVARLVGASDE
VPISAARFWSLDYLIFYAYYLICVGLFATFWFIYSPHRWQYWSILGTSLIIFVTWFLV
EVGVAVNAWYAPFYDLIQTALSSPHKVTLGQFYHEVGVFLGIALIAVVIGVLNNFFVS
HYVFRWRTAMNEHYMAHWQYLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA
FLPVLVTLSAHVPNLPIVGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
AAYRKELVYGEDDASRATPPTVRELFSAVRHNYFRLYFHYMYFNIARILYLQVDNVFG
LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTLVELMSIYKRLRSFERQ
LDGQPVQEVTHSFS"
misc_feature 413237..414409
/gene="smbA"
/locus_tag="SeAg_B0412"
/note="microcin B17 transporter; Reviewed; Region:
PRK11098"
/db_xref="CDD:182960"
gene 414427..415521
/locus_tag="SeAg_B0413"
/db_xref="GeneID:6795813"
CDS 414427..415521
/locus_tag="SeAg_B0413"
/note="identified by match to protein family HMM PF07759"
/codon_start=1
/transl_table=11
/product="outer membrane lipoprotein"
/protein_id="YP_002145357.1"
/db_xref="GI:197248459"
/db_xref="GeneID:6795813"
/translation="MSAASRLYPLPFLAVAILAGCSSQSGQPVSKGEKPVDVASVVRQ
KMPASVKDREAWAKDIATTFKSQGLAPTVENICSVLAVAQQESGYQADPVVPGLSKIA
WQEIDRRAERLHIPLFLVHTALKINSPNGKSYSERLDTVKTEKQLSAIFDDFINMVPM
GQTLFGSYNPVHTGGPMQVSIAFAEQHAKGYPWKMTGTVRQEVFTRRGGLWFGTYHLL
NYPANYSAPVFRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYNSKEPGKTE
LAVRKLAGQLGMSEREIRSQLEKGDSLAFEKTALYKKVYKLAEAKTGKTLAREMLPGI
QLESPKITRKLTTAWFAKRVDERRARCMGR"
misc_feature 414568..415518
/locus_tag="SeAg_B0413"
/note="Protein of unknown function (DUF1615); Region:
DUF1615; pfam07759"
/db_xref="CDD:219558"
gene complement(415559..415867)
/locus_tag="SeAg_B0414"
/db_xref="GeneID:6794529"
CDS complement(415559..415867)
/locus_tag="SeAg_B0414"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145358.1"
/db_xref="GI:197247801"
/db_xref="GeneID:6794529"
/translation="MADFTLSKSLFSGKHRETSSTPGNIAYAIFVLFCFWAGAQLLNL
LVHAPGIYEHLMQVQDTGRPRVEIGLGVGTIFGLVPFLTGCLIFAVIAAFLRWRHRHQ
"
misc_feature complement(415565..415867)
/locus_tag="SeAg_B0414"
/note="Protein of unknown function (DUF2755); Region:
DUF2755; pfam10954"
/db_xref="CDD:151401"
gene 416135..416350
/locus_tag="SeAg_B0415"
/db_xref="GeneID:6793293"
CDS 416135..416350
/locus_tag="SeAg_B0415"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145359.1"
/db_xref="GI:197250130"
/db_xref="GeneID:6793293"
/translation="MRLPVKIRRDWHYYAFSIGLIFILNGVVGLLGFEAKGWQTYGVG
LVTWIISFWLAGFIIRRREDGEVKDAR"
misc_feature 416135..416326
/locus_tag="SeAg_B0415"
/note="Protein of unknown function (DUF2754); Region:
DUF2754; pfam10953"
/db_xref="CDD:151400"
gene complement(416376..417470)
/gene="ddl"
/locus_tag="SeAg_B0416"
/db_xref="GeneID:6797153"
CDS complement(416376..417470)
/gene="ddl"
/locus_tag="SeAg_B0416"
/EC_number="6.3.2.4"
/note="D-alanine--D-alanine ligase; DdlA; DdlB;
cytoplasmic; catalyzes the formation of D-alanyl-D-alanine
from two D-alanines in peptidoglycan synthesis; there are
two forms of this enzyme in Escherichia coli"
/codon_start=1
/transl_table=11
/product="D-alanyl-alanine synthetase A"
/protein_id="YP_002145360.1"
/db_xref="GI:197249513"
/db_xref="GeneID:6797153"
/translation="MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID
KAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVI
FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT
LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKV
VVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPS
EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQA
SGLGYTDLISRLIELALERHTANNALKTTM"
misc_feature complement(416415..417470)
/gene="ddl"
/locus_tag="SeAg_B0416"
/note="D-alanyl-alanine synthetase A; Reviewed; Region:
ddl; PRK01966"
/db_xref="CDD:179356"
misc_feature complement(417081..417461)
/gene="ddl"
/locus_tag="SeAg_B0416"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature complement(416427..417032)
/gene="ddl"
/locus_tag="SeAg_B0416"
/note="D-ala D-ala ligase C-terminus; Region:
Dala_Dala_lig_C; pfam07478"
/db_xref="CDD:203643"
gene 417578..418261
/locus_tag="SeAg_B0417"
/db_xref="GeneID:6792855"
CDS 417578..418261
/locus_tag="SeAg_B0417"
/note="identified by match to protein family HMM PF06904"
/codon_start=1
/transl_table=11
/product="extensin family protein"
/protein_id="YP_002145361.1"
/db_xref="GI:197251128"
/db_xref="GeneID:6792855"
/translation="MRGKGFLIIVLLGGIGGLGYRYLPSYYNPFAPLQLADPPGWITT
FKLQRLTPSQCRELLTAANQQGLISSQPVADSAGECPLSHVVRVRDFGQVKLSSSFLA
SCPLALRSALFVEQQAKPLTETWMKRRLTRIEHLGSYACRNIYHRPDARRSEHASAEA
LDVSGFQLSDGRKITVLRGWGREETGPWLRAMLNASCHYYGNGLGPDYNAAHANHFHL
GMRGYGVCR"
misc_feature <417635..418258
/locus_tag="SeAg_B0417"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3921"
/db_xref="CDD:33707"
misc_feature 417731..418258
/locus_tag="SeAg_B0417"
/note="Extensin-like protein C-terminus; Region:
Extensin-like_C; pfam06904"
/db_xref="CDD:148494"
gene 418430..419641
/locus_tag="SeAg_B0418"
/db_xref="GeneID:6793783"
CDS 418430..419641
/locus_tag="SeAg_B0418"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily protein"
/protein_id="YP_002145362.1"
/db_xref="GI:197249926"
/db_xref="GeneID:6793783"
/translation="MESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEAL
SMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQL
FLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADH
IGLRAVFLITAILLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLF
FTTMVIQLCNGSISPILALFIKSMMPDSNNIAFLSGLIASVPGISALISAPRLGKLGD
RIGTERILMATLICAVLLFFAMSWVTTPFQLGLLRFLLGFADGAMLPAVQTLLVKYSS
DQITGRIFGYNQSFMYLGNVVGPLMGATVSAMAGFRWVFIATAAIVLINIGQLTLALR
RRRNAQKAKGQ"
misc_feature 418436..419629
/locus_tag="SeAg_B0418"
/note="drug efflux system protein MdtG; Provisional;
Region: PRK09874"
/db_xref="CDD:182127"
misc_feature 418451..419575
/locus_tag="SeAg_B0418"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(418493..418495,418502..418510,418514..418519,
418583..418585,418592..418597,418604..418606,
418616..418621,418625..418630,418766..418771,
418775..418780,418787..418792,418799..418801,
418835..418840,418847..418852,418868..418870,
419102..419104,419111..419116,419123..419128,
419135..419137,419186..419188,419198..419200,
419210..419212,419219..419221,419231..419233,
419372..419374,419381..419386,419393..419395,
419405..419410,419417..419419,419450..419455,
419462..419467,419474..419479,419486..419488)
/locus_tag="SeAg_B0418"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 419938..420198
/locus_tag="SeAg_B0419"
/db_xref="GeneID:6792589"
CDS 419938..420198
/locus_tag="SeAg_B0419"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145363.1"
/db_xref="GI:197247479"
/db_xref="GeneID:6792589"
/translation="MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNE
QEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH"
misc_feature 419938..420195
/locus_tag="SeAg_B0419"
/note="anti-RssB factor; Provisional; Region: PRK10244"
/db_xref="CDD:182328"
gene 420548..420868
/locus_tag="SeAg_B0420"
/db_xref="GeneID:6796144"
CDS 420548..420868
/locus_tag="SeAg_B0420"
/note="identified by match to protein family HMM PF07769"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145364.1"
/db_xref="GI:197251519"
/db_xref="GeneID:6796144"
/translation="MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQA
LKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACL
KKAA"
misc_feature 420608..420865
/locus_tag="SeAg_B0420"
/note="hypothetical protein; Provisional; Region:
PRK11505"
/db_xref="CDD:183165"
misc_feature 420623..420724
/locus_tag="SeAg_B0420"
/note="psiF repeat; Region: PsiF_repeat; pfam07769"
/db_xref="CDD:203759"
misc_feature 420752..420856
/locus_tag="SeAg_B0420"
/note="psiF repeat; Region: PsiF_repeat; pfam07769"
/db_xref="CDD:203759"
gene 420960..422072
/gene="adrA"
/locus_tag="SeAg_B0421"
/db_xref="GeneID:6796731"
CDS 420960..422072
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="'catalyzes the conversion of 2 GTP into c-di-GMP;
adrA overexpression induces cellulose biosynthesis, cell
adherence to abiotic surfaces and swimming and swarming
motility; AdrA acts post-transcriptionally on the bcsABZC
operon activating cellulose biosynthesis'"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase AdrA"
/protein_id="YP_002145365.1"
/db_xref="GI:197251011"
/db_xref="GeneID:6796731"
/translation="MFPKIMNDENFYRKAVEQAVAPPDPSDDRQRSGLRFARRIRLPR
AVGLGGMFLPVAAVLVSQPVFGGWWLLLVGWSFVWPHLAWQWAAKALDPLRQEIYNLK
VDAILSGMWIALMGVNMLPAAALFMMMSMNLMGAGGRRLFTVGMGLLLASCLVTLQLT
GLPVAMRSSSLEVTLSLPVIMLYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVY
NRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQI
TLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLRLPGAPQVMLRISVGV
APLTPQIGHYREWLKSADMALYKAKNAGRNRTEVAA"
misc_feature 420975..422069
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="diguanylate cyclase AdrA; Provisional; Region:
adrA; PRK10245"
/db_xref="CDD:182329"
misc_feature 421071..421343
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="MASE2 domain; Region: MASE2; pfam05230"
/db_xref="CDD:147434"
misc_feature 421590..422054
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(421698..421700,421827..421829)
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(421713..421715,421722..421727,421737..421739,
421749..421751,421815..421817,421821..421832)
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(421803..421805,421887..421889)
/gene="adrA"
/locus_tag="SeAg_B0421"
/note="I-site; other site"
/db_xref="CDD:143635"
gene complement(422087..422896)
/gene="proC"
/locus_tag="SeAg_B0422"
/db_xref="GeneID:6793580"
CDS complement(422087..422896)
/gene="proC"
/locus_tag="SeAg_B0422"
/EC_number="1.5.1.2"
/note="catalyzes the formation of L-proline from
pyrroline-5-carboxylate"
/codon_start=1
/transl_table=11
/product="pyrroline-5-carboxylate reductase"
/protein_id="YP_002145366.1"
/db_xref="GI:197248293"
/db_xref="GeneID:6793580"
/translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA
LHDQYGINAAQSAQEVAQVADIVFGAVKPGIMVKVLSEISSSLNKDSLVVSIAAGVTL
DQLARALGHDRKIIRAMPNTPSLVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
GKHPGELKDMVCSPGGTTIEAVRVLEERGFRAAVIEAMTKCMEKSEALSKS"
misc_feature complement(422090..422896)
/gene="proC"
/locus_tag="SeAg_B0422"
/note="pyrroline-5-carboxylate reductase; Reviewed;
Region: PRK11880"
/db_xref="CDD:237008"
misc_feature complement(422093..422896)
/gene="proC"
/locus_tag="SeAg_B0422"
/note="NADP oxidoreductase coenzyme F420-dependent;
Region: F420_oxidored; cl17232"
/db_xref="CDD:247786"
gene 422930..423079
/locus_tag="SeAg_B0423"
/db_xref="GeneID:6794849"
CDS 422930..423079
/locus_tag="SeAg_B0423"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145367.1"
/db_xref="GI:197249733"
/db_xref="GeneID:6794849"
/translation="MVSLTRIENGQKEKQHFDERQKRETIKDCISYGRHYDHLGGCGC
VSECH"
gene 423036..423491
/locus_tag="SeAg_B0424"
/db_xref="GeneID:6795677"
CDS 423036..423491
/locus_tag="SeAg_B0424"
/note="identified by match to protein family HMM PF02639"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145368.1"
/db_xref="GI:197251635"
/db_xref="GeneID:6795677"
/translation="MTIWVDADACPNVIKEILYRAAERMQLPLILVANQALRVPPSRF
IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEVLEKGAAALNPRGERYSDATI
RERLTMRDFMDTLRASGVQTGGPNTLSPRDRQHFAAELDKWWLESQRKK"
misc_feature 423036..423488
/locus_tag="SeAg_B0424"
/note="hypothetical protein; Validated; Region: PRK00124"
/db_xref="CDD:178882"
gene 423676..424221
/gene="aroL"
/locus_tag="SeAg_B0425"
/db_xref="GeneID:6796365"
CDS 423676..424221
/gene="aroL"
/locus_tag="SeAg_B0425"
/EC_number="2.7.1.71"
/note="type II enzyme similar to type I but differentially
regulated and with a lower Km; catalyzes the formation of
shikimate 3-phosphate from shikimate in aromatic amino
acid biosynthesis"
/codon_start=1
/transl_table=11
/product="shikimate kinase"
/protein_id="YP_002145369.1"
/db_xref="GI:197249572"
/db_xref="GeneID:6796365"
/translation="MMQPLYLVGPRGCGKTTIGMALAQATGFRFADTDRWLQSHVQMS
VADIVEKEGWGGFRARETAALEAVSAPSTVVATGGGIILTEYNRRYMHRVGVVIYLCA
PVSTLVNRLEAEPEADLRPTLTGKPLSEEVREVLEQRDALYRETAHYIIDATKAPAQV
VSEIIAALPPSTQRLQGDVYT"
misc_feature 423676..424197
/gene="aroL"
/locus_tag="SeAg_B0425"
/note="Shikimate kinase [Amino acid transport and
metabolism]; Region: AroK; COG0703"
/db_xref="CDD:31047"
misc_feature 423685..424140
/gene="aroL"
/locus_tag="SeAg_B0425"
/note="Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway which
converts erythrose-4-phosphate to chorismic acid, found in
bacteria, fungi and plants. Chorismic acid is a important
intermediate in the synthesis...; Region: SK; cd00464"
/db_xref="CDD:30188"
misc_feature order(423709..423726,424003..424005,424033..424035)
/gene="aroL"
/locus_tag="SeAg_B0425"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:30188"
misc_feature order(423721..423723,423769..423771,423775..423777)
/gene="aroL"
/locus_tag="SeAg_B0425"
/note="magnesium binding site [ion binding]; other site"
/db_xref="CDD:30188"
misc_feature order(423775..423777,423847..423849,423856..423858,
423907..423915,424090..424092)
/gene="aroL"
/locus_tag="SeAg_B0425"
/note="putative shikimate binding site; other site"
/db_xref="CDD:30188"
gene 424248..424439
/locus_tag="SeAg_B0426"
/db_xref="GeneID:6796261"
CDS 424248..424439
/locus_tag="SeAg_B0426"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145370.1"
/db_xref="GI:197250343"
/db_xref="GeneID:6796261"
/translation="MPTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSLISEH
PTAEEAMDAKKRYEDPDKS"
misc_feature 424248..424436
/locus_tag="SeAg_B0426"
/note="hypothetical protein; Provisional; Region:
PRK10380"
/db_xref="CDD:182421"
gene 424690..425367
/locus_tag="SeAg_B0427"
/db_xref="GeneID:6795473"
CDS 424690..425367
/locus_tag="SeAg_B0427"
/note="identified by match to protein family HMM PF07302"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145371.1"
/db_xref="GI:197248244"
/db_xref="GeneID:6795473"
/translation="MSASLAILTIGVVPMSEVLPLLTEYIDEQHITHHSLLGKMSRED
VMADYAVEPGDDPLLTLLNDNQIAHVSRQKVERDLQSVVEVLDNQGYDVIILMSTAAI
KSMAARNSILLEPLRIIPPLVASIVDGHQVGVIVPVAELLAAQEKKWQVLQMPPVYSL
ANPVHGSEQQLIDAGQALLDQGADVIMLDCLGFHQRHRDILQQALDVPVLLSNVLIAR
LASELLV"
misc_feature 424690..425361
/locus_tag="SeAg_B0427"
/note="hypothetical protein; Provisional; Region:
PRK10481"
/db_xref="CDD:182491"
gene 425438..425722
/locus_tag="SeAg_B0428"
/db_xref="GeneID:6796531"
CDS 425438..425722
/locus_tag="SeAg_B0428"
/note="identified by match to protein family HMM PF06865"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145372.1"
/db_xref="GI:197247889"
/db_xref="GeneID:6796531"
/translation="MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAEPEE
MTVVSGALKVLLPGTVEWKVYTAGEVFNVPGHSEFHLQVAEPTSYLCRYL"
misc_feature 425438..425719
/locus_tag="SeAg_B0428"
/note="hypothetical protein; Provisional; Region:
PRK10579"
/db_xref="CDD:182565"
gene complement(425765..426676)
/gene="rdgC"
/locus_tag="SeAg_B0429"
/db_xref="GeneID:6796807"
CDS complement(425765..426676)
/gene="rdgC"
/locus_tag="SeAg_B0429"
/note="Required for efficient pilin antigenic variation"
/codon_start=1
/transl_table=11
/product="recombination associated protein"
/protein_id="YP_002145373.1"
/db_xref="GI:197247969"
/db_xref="GeneID:6796807"
/translation="MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMG
WVPPMGSHSDALTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKT
EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDE
IAVHIEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFD
ADFILMTGELAALIQSLVEGLGGEAQR"
misc_feature complement(425768..426673)
/gene="rdgC"
/locus_tag="SeAg_B0429"
/note="recombination associated protein; Reviewed; Region:
rdgC; PRK00321"
/db_xref="CDD:178977"
gene 426802..427710
/locus_tag="SeAg_B0430"
/db_xref="GeneID:6797218"
CDS 426802..427710
/locus_tag="SeAg_B0430"
/EC_number="2.7.1.59"
/note="catalyzes phosphorylation of fructose; cytosolic
enzyme"
/codon_start=1
/transl_table=11
/product="fructokinase"
/protein_id="YP_002145374.1"
/db_xref="GI:197247612"
/db_xref="GeneID:6797218"
/translation="MRIGIDLGGTKTEVIALDDAGEQRFRHRLPTPREDYQQTIETIA
TLVDMAEQATGQTGSVGIGIPGSLSPYTGVVKNANSTWLNGQPFDSDVSRRLKREVRL
ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRVHIGGNGTAGEWGHNPL
PWMDDDELRYCEEIPCYCGKQGCIETFISGTGFATDYQRLSGNALKGDEIIRLVDAQD
AVAELALSRYELRLAKALSHVVNILDPDVIVLGGGMSNVERLYKTVPSLMKSFVFGGE
CETPVRKARHGDSSGVRGAAWLWPLA"
misc_feature 426802..427701
/locus_tag="SeAg_B0430"
/note="fructokinase; Reviewed; Region: PRK09557"
/db_xref="CDD:181951"
misc_feature 426808..427251
/locus_tag="SeAg_B0430"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(426817..426828,426832..426834,426838..426840,
427114..427116,427186..427197)
/locus_tag="SeAg_B0430"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(427730..428902)
/locus_tag="SeAg_B0431"
/db_xref="GeneID:6794710"
CDS complement(427730..428902)
/locus_tag="SeAg_B0431"
/note="member of the major facilitator superfamily (MFS)
of transporters; unknown function; may be associated with
transport or processing of arabinose polymers"
/codon_start=1
/transl_table=11
/product="MFS transport protein AraJ"
/protein_id="YP_002145375.1"
/db_xref="GI:197248102"
/db_xref="GeneID:6794710"
/translation="MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMI
SFYAFGVVLGAPVMALFSSRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSG
FPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPVGTYLSQEFSWRYTF
LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPAPWLIFAATMFGNAGVFAW
FSYIKPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIV
LSLMALFFFSGYKTASLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
LGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG"
misc_feature complement(427757..428902)
/locus_tag="SeAg_B0431"
/note="MFS transport protein AraJ; Provisional; Region:
PRK10091"
/db_xref="CDD:182234"
misc_feature complement(427850..428890)
/locus_tag="SeAg_B0431"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(427892..427894,427901..427906,
427913..427918,427925..427930,427958..427960,
427967..427972,427982..427984,427991..427996,
428003..428005,428147..428149,428159..428161,
428168..428170,428180..428182,428192..428194,
428234..428236,428243..428248,428255..428260,
428267..428269,428483..428485,428501..428506,
428513..428518,428552..428554,428561..428566,
428573..428578,428585..428590,428726..428731,
428735..428740,428750..428752,428759..428764,
428771..428773,428822..428827,428831..428839,
428846..428848))
/locus_tag="SeAg_B0431"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(429075..432215)
/locus_tag="SeAg_B0432"
/db_xref="GeneID:6795222"
CDS complement(429075..432215)
/locus_tag="SeAg_B0432"
/note="with SbcD cleaves DNA hairpin structures; also has
5' single-strand endonuclease activity"
/codon_start=1
/transl_table=11
/product="exonuclease SbcC"
/protein_id="YP_002145376.1"
/db_xref="GI:197247629"
/db_xref="GeneID:6795222"
/translation="MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKT
TLLDAICLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNRAR
NQPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYERFTRSMLLSQGQFAA
FLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQL
QQLEASLQALTDEEKRLLADQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKA
QPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACA
HRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSD
TRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIIPKQKRQAQLQAAIA
RHHQEQMQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPCPL
CGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESE
AQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQ
IAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQRQT
EFADLQTQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTT
QEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKAL
SAQSTQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDAD
NRQRQRALMAEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGLTLDNLVWLANHQLT
RLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHK
TRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKERIPVQIKVKK
INGLGYSKLDKAFAVE"
misc_feature complement(429078..432215)
/locus_tag="SeAg_B0432"
/note="exonuclease subunit SbcC; Provisional; Region:
PRK10246"
/db_xref="CDD:182330"
misc_feature complement(<431733..432215)
/locus_tag="SeAg_B0432"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature complement(432084..432107)
/locus_tag="SeAg_B0432"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(431751..431753,432081..432089,
432093..432098))
/locus_tag="SeAg_B0432"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(431751..431762)
/locus_tag="SeAg_B0432"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(429126..>429386)
/locus_tag="SeAg_B0432"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature complement(429342..429371)
/locus_tag="SeAg_B0432"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(429270..429287)
/locus_tag="SeAg_B0432"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(429252..429263)
/locus_tag="SeAg_B0432"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(429168..429188)
/locus_tag="SeAg_B0432"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene complement(432212..433414)
/locus_tag="SeAg_B0433"
/db_xref="GeneID:6794727"
CDS complement(432212..433414)
/locus_tag="SeAg_B0433"
/note="'with SbcC cleaves DNA hairpin structure, also has
5' single-strand endonuclease activity'"
/codon_start=1
/transl_table=11
/product="exonuclease SbcD"
/protein_id="YP_002145377.1"
/db_xref="GI:197249309"
/db_xref="GeneID:6794727"
/translation="MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAII
VAGDIFDTGSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNT
TVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY
YQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYI
ALGHIHRAQCVGGTEHIRYCGSPIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVT
QPLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHNIQRRIQTLTESLPVE
VLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDPPQRERLNQLFSSTLY
ALNEEHEA"
misc_feature complement(432215..433414)
/locus_tag="SeAg_B0433"
/note="exonuclease subunit SbcD; Provisional; Region:
PRK10966"
/db_xref="CDD:182871"
misc_feature complement(432674..433411)
/locus_tag="SeAg_B0433"
/note="Mre11 nuclease, N-terminal metallophosphatase
domain; Region: MPP_Mre11_N; cd00840"
/db_xref="CDD:163616"
misc_feature complement(order(432743..432751,432863..432865,
433163..433168,433271..433273,433385..433387,
433391..433393))
/locus_tag="SeAg_B0433"
/note="active site"
/db_xref="CDD:163616"
misc_feature complement(order(432743..432745,432749..432751,
432863..432865,433166..433168,433271..433273,
433385..433387,433391..433393))
/locus_tag="SeAg_B0433"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163616"
misc_feature complement(order(433016..433021,433148..433153,
433157..433159,433262..433264,433361..433381))
/locus_tag="SeAg_B0433"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:163616"
misc_feature complement(432296..432595)
/locus_tag="SeAg_B0433"
/note="Type 5 capsule protein repressor C-terminal domain;
Region: SbcD_C; pfam12320"
/db_xref="CDD:204880"
gene complement(433457..433588)
/locus_tag="SeAg_B0434"
/db_xref="GeneID:6795312"
CDS complement(433457..433588)
/locus_tag="SeAg_B0434"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145378.1"
/db_xref="GI:197248526"
/db_xref="GeneID:6795312"
/translation="MRQIYDRFMKKKGGIDSMLMIYDTGETVHYRVPAVNCAQKWRG"
gene 433630..434319
/gene="phoB"
/locus_tag="SeAg_B0435"
/db_xref="GeneID:6796975"
CDS 433630..434319
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="two component response regulator for the phosphate
regulon; PhoR phosphorylates PhoB"
/codon_start=1
/transl_table=11
/product="transcriptional regulator PhoB"
/protein_id="YP_002145379.1"
/db_xref="GI:197250808"
/db_xref="GeneID:6796975"
/translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNE
PWPDLILLDWMLPGGSGLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDY
ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEF
KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTV
RGTGYRFSTRF"
misc_feature 433630..434316
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="transcriptional regulator PhoB; Provisional;
Region: PRK10161"
/db_xref="CDD:182277"
misc_feature 433645..433989
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(433654..433659,433786..433788,433810..433812,
433876..433878,433933..433935,433942..433947)
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="active site"
/db_xref="CDD:29071"
misc_feature 433786..433788
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(433795..433800,433804..433812)
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 433942..433950
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 434023..434304
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(434095..434097,434152..434157,434209..434211,
434218..434220,434242..434247,434278..434280,
434293..434295)
/gene="phoB"
/locus_tag="SeAg_B0435"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 434389..435684
/gene="phoR"
/locus_tag="SeAg_B0436"
/db_xref="GeneID:6792951"
CDS 434389..435684
/gene="phoR"
/locus_tag="SeAg_B0436"
/EC_number="2.7.3.-"
/note="membrane-associated histidine protein kinase that
phosphorylates phoB in response to environmental signals
as part of the two-component phosphate regulatory system
phoR/phoB"
/codon_start=1
/transl_table=11
/product="phosphate regulon sensor protein"
/protein_id="YP_002145380.1"
/db_xref="GI:197250186"
/db_xref="GeneID:6792951"
/translation="MLERLSWKRLVLELVLCCIPALILSAFFGYLPWFLLAAVTGLLV
WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLRYPEFTQYLKTRD
FTRPLHLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
LTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNE
KVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYNAVNHTP
AGTHITVSWRRAAHGAEFCIQDNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLA
IVKHALNHHESRLEIDSSPGKGTRFSFVLPERLIAKNSD"
misc_feature 434389..435678
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="phosphate regulon sensor protein; Provisional;
Region: phoR; PRK11006"
/db_xref="CDD:182895"
misc_feature 434395..434664
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="Domain of unknown function (DUF3329); Region:
DUF3329; pfam11808"
/db_xref="CDD:204751"
misc_feature 434707..435027
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(434755..434757,434767..434769,434785..434787,
434824..434835,434926..434928,434941..434943)
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(434815..434817,434827..434829,434851..434853,
434860..434862,434881..434883,434962..434964,
434968..434970)
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 434995..435183
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(435007..435009,435019..435021,435031..435033,
435040..435042,435052..435054,435061..435063,
435112..435114,435124..435126,435133..435135,
435145..435147,435154..435156,435166..435168)
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 435025..435027
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 435340..435651
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(435358..435360,435370..435372,435379..435381,
435448..435450,435454..435456,435460..435462,
435466..435471,435550..435561,435607..435609,
435613..435615,435628..435633,435637..435639)
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 435370..435372
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(435460..435462,435466..435468,435550..435552,
435556..435558)
/gene="phoR"
/locus_tag="SeAg_B0436"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(435897..436046)
/locus_tag="SeAg_B0437"
/db_xref="GeneID:6797211"
CDS complement(435897..436046)
/locus_tag="SeAg_B0437"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145381.1"
/db_xref="GI:197251880"
/db_xref="GeneID:6797211"
/translation="MPFPEDYKAAFFINFSGKSSRTDAAKNCFSIYRANAVVMTAPEA
QFKRL"
gene 436093..437412
/gene="brnQ"
/locus_tag="SeAg_B0438"
/db_xref="GeneID:6796061"
CDS 436093..437412
/gene="brnQ"
/locus_tag="SeAg_B0438"
/note="identified by match to protein family HMM PF05525;
match to protein family HMM TIGR00796"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid transport system II
carrier protein"
/protein_id="YP_002145382.1"
/db_xref="GI:197251091"
/db_xref="GeneID:6796061"
/translation="MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
AIGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGLLLATVCYLAVGPLFATPRT
ATVSFEVGIAPLTGDSAMPLLIYSVVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
ILSVAAIIWPAGPISNALDAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSANGAAILHAYVQHTFG
GAGSFLLAALIFIACLVTAVGLTCACAEFFAQYIPLSYRTLVFILGGFSMVVSNLGLS
HLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAF
GDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH"
misc_feature 436093..437409
/gene="brnQ"
/locus_tag="SeAg_B0438"
/note="branched-chain amino acid transport system 2
carrier protein BrnQ; Provisional; Region: PRK15433"
/db_xref="CDD:185331"
gene 437427..438857
/gene="proY"
/locus_tag="SeAg_B0439"
/db_xref="GeneID:6793744"
CDS 437427..438857
/gene="proY"
/locus_tag="SeAg_B0439"
/note="'cryptic permease that may be involved in the
transport of proline across the inner membrane; in
Salmonella typhimurium, the proY gene is silent unless
overexpressed on a multicopy plasmid or activated by a
proZ mutation'"
/codon_start=1
/transl_table=11
/product="proline-specific permease"
/protein_id="YP_002145383.1"
/db_xref="GI:197249029"
/db_xref="GeneID:6793744"
/translation="MYTTGLNAPWFFIVLIGQKLMESNNKLKRGLSTRHIRFMALGSA
IGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN
LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPAVPHWIWVLSVVLIICAINLM
SVKVFGELEFWFSFFKVATIIIMIVAGIGIIVWGIGNGGQPTGIHNLWSNGGFFSNGW
LGMIMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMS
IYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAE
QGSAPKVFAKTSRRGIPWVTVLVMTIALLFAVYLNYIMPENVFLVIASLATFATVWVW
IMILLSQIAFRRRLPPEEVKALKFKVPGGVVTTIAGLIFLVFIIALIGYHPDTRISLY
VGFAWIVLLLIGWIFKRRRDRQLAQA"
misc_feature 437487..438854
/gene="proY"
/locus_tag="SeAg_B0439"
/note="putative proline-specific permease; Provisional;
Region: proY; PRK10580"
/db_xref="CDD:182566"
gene 439019..440836
/locus_tag="SeAg_B0440"
/db_xref="GeneID:6797323"
CDS 439019..440836
/locus_tag="SeAg_B0440"
/EC_number="3.2.1.20"
/note="identified by match to protein family HMM PF00128"
/codon_start=1
/transl_table=11
/product="maltodextrin glucosidase"
/protein_id="YP_002145384.1"
/db_xref="GI:197249511"
/db_xref="GeneID:6797323"
/translation="MLNAWHLPVAPFVKQHNDKLTITLWLSGENPPSRVTLRSEFDNE
EISLAMRKQRRQPQPGVTAWRATLNIALGQPRRRYSFKLLWHDRQLWFTPQGFNRFPP
ARLEQFAVDVPDSGPQWVADQIFYQIFPDRFARSATREADQDRVYYHHAAGQEIVLRD
WDDPLTPLAGGSTFYGGCLNGICEKLPYLKKLGVTALYLNPVFTAPSVHKYDTEDYRH
VDPQFGGDRALLRLRRETQAQGMRLVLDGVFNHSGDSHAWFDRHNRSTGGACHHPDSP
WRDWYSFSPQGVALDWLGYPSLPKLDYQSETLVDEIYRGEDSIVRHWLKAPWNMDGWR
LDVVHMLGEAGGARHNLQHVAGITRAAKEAQPEAYIVGEHFGDARQWLQADAEDAAMN
YRGFTFPLWGFLANTDIAYEPQHIDARTCIAWMDNYRAGLSHQQQLRMFNQLDSHDTA
RFKTLLGKDAARLPLAVVWLFTWPGVPCIYYGDEVGVDGANDPMCRKPFPWDERKQDG
NLLALYQRMAKLRQRSLALRRGGCQALYAEGDVVVFVRVYQQQRALVAINRGEACEVA
LEALPLLNVAGWQCKTGSGDIREGRLSLPAISATVWMNR"
misc_feature 439019..440806
/locus_tag="SeAg_B0440"
/note="maltodextrin glucosidase; Provisional; Region:
PRK10785"
/db_xref="CDD:182728"
misc_feature 439067..439309
/locus_tag="SeAg_B0440"
/note="N-terminal Early set domain associated with the
catalytic domain of cyclomaltodextrinase and
pullulan-degrading enzymes; Region: E_set_CDase_PDE_N;
cd02857"
/db_xref="CDD:199887"
misc_feature order(439244..439246,439250..439252,439298..439303)
/locus_tag="SeAg_B0440"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:199887"
misc_feature 439382..440611
/locus_tag="SeAg_B0440"
/note="Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins; Region:
AmyAc_CMD; cd11338"
/db_xref="CDD:200477"
misc_feature order(439643..439645,439649..439651,439769..439771,
439910..439912,440024..440029,440135..440137,
440141..440143,440357..440362,440492..440494,
440504..440506)
/locus_tag="SeAg_B0440"
/note="active site"
/db_xref="CDD:200477"
misc_feature order(439916..439918,440033..440050,440081..440083,
440141..440146,440210..440212,440309..440311)
/locus_tag="SeAg_B0440"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:200477"
misc_feature order(440024..440026,440135..440137,440360..440362)
/locus_tag="SeAg_B0440"
/note="catalytic site [active]"
/db_xref="CDD:200477"
gene complement(440908..441510)
/locus_tag="SeAg_B0441"
/db_xref="GeneID:6792853"
CDS complement(440908..441510)
/locus_tag="SeAg_B0441"
/EC_number="1.11.1.15"
/note="identified by match to protein family HMM PF00578;
match to protein family HMM PF08534"
/codon_start=1
/transl_table=11
/product="peroxiredoxin-2"
/protein_id="YP_002145385.1"
/db_xref="GI:197248597"
/db_xref="GeneID:6792853"
/translation="MVLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPM
DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAM
VADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA
LQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAENISSL"
misc_feature complement(440911..441510)
/locus_tag="SeAg_B0441"
/note="peroxidase; Provisional; Region: PRK15000"
/db_xref="CDD:184962"
misc_feature complement(440977..441501)
/locus_tag="SeAg_B0441"
/note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells through
its peroxidase activity by reducing hydrogen peroxide,
peroxynitrite, and organic hydroperoxides; Region:
PRX_Typ2cys; cd03015"
/db_xref="CDD:239313"
misc_feature complement(order(440989..441000,441043..441045,
441064..441069,441079..441087,441091..441099,
441136..441138,441166..441168,441355..441357,
441364..441369,441499..441501))
/locus_tag="SeAg_B0441"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239313"
misc_feature complement(order(441151..441153,441187..441189,
441193..441195,441268..441273,441373..441375))
/locus_tag="SeAg_B0441"
/note="decamer (pentamer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:239313"
misc_feature complement(order(441133..441135,441361..441363,
441370..441372))
/locus_tag="SeAg_B0441"
/note="catalytic triad [active]"
/db_xref="CDD:239313"
misc_feature complement(order(440998..441000,441361..441363))
/locus_tag="SeAg_B0441"
/note="peroxidatic and resolving cysteines [active]"
/db_xref="CDD:239313"
gene complement(441720..442301)
/gene="acpH"
/locus_tag="SeAg_B0442"
/db_xref="GeneID:6797046"
CDS complement(441720..442301)
/gene="acpH"
/locus_tag="SeAg_B0442"
/EC_number="3.1.4.14"
/note="Converts holo-ACP to apo-ACP by hydrolytic cleavage
of the phosphopantetheine prosthetic group from ACP"
/codon_start=1
/transl_table=11
/product="ACP phosphodieterase"
/protein_id="YP_002145386.1"
/db_xref="GI:197249111"
/db_xref="GeneID:6797046"
/translation="MNFLAHLHLAHLADSSLSGNLLADFVRGNPATHYPPDVVEGIYM
HRRIDVMTDNLPEVREAREWFRHETRRVASITLDVMWDHFLSRHWTQISPDFPLQAFV
GYAHAQVATILPDSPPRFVNLNDYLWSEKWLERYRDMDFIQNVLNGMANRRPRLDALR
DSWYDLDAHYDALEERFWHFYPRMMAQAARKAL"
misc_feature complement(441723..442301)
/gene="acpH"
/locus_tag="SeAg_B0442"
/note="acyl carrier protein phosphodiesterase;
Provisional; Region: PRK10045"
/db_xref="CDD:182207"
gene 442395..443459
/gene="queA"
/locus_tag="SeAg_B0443"
/db_xref="GeneID:6794242"
CDS 442395..443459
/gene="queA"
/locus_tag="SeAg_B0443"
/EC_number="5.-.-.-"
/note="Synthesizes oQ from preQ1 in a single
S-adenosylmethionine-requiring step"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_002145387.1"
/db_xref="GI:197248441"
/db_xref="GeneID:6794242"
/translation="MRVTDFSFELPESLIAHYPQPERSRCRLLSLEGPTGALTHGTFT
DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
PGTELLLGDDESIHATMTARHGALFEVEFNDPRPVLDILNAIGHMPLPPYIDRPDEDA
DRELYQTVYSEKPGAVAAPTAGLHFDEPLLAALREKGVEMAFVTLHVGAGTFQPVRVD
TIEDHIMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKRDLIEPF
FGDTQIFIYPGYQYKVIDALITNFHLPESTLIMLVSAFAGYQHTMNAYKTAVEQKYRF
FSYGDAMFITYNPQAISERP"
misc_feature 442395..443426
/gene="queA"
/locus_tag="SeAg_B0443"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
misc_feature 442398..443426
/gene="queA"
/locus_tag="SeAg_B0443"
/note="Queuosine biosynthesis protein; Region:
Queuosine_synth; pfam02547"
/db_xref="CDD:202279"
gene 443656..444783
/gene="tgt"
/locus_tag="SeAg_B0444"
/db_xref="GeneID:6794511"
CDS 443656..444783
/gene="tgt"
/locus_tag="SeAg_B0444"
/EC_number="2.4.2.29"
/note="'Exchanges the guanine residue with
7-aminomethyl-7-deazaguanine in tRNAs with GU(N)
anticodons (tRNA-Asp, -Asn, -His and -Tyr)'"
/codon_start=1
/transl_table=11
/product="queuine tRNA-ribosyltransferase"
/protein_id="YP_002145388.1"
/db_xref="GI:197248843"
/db_xref="GeneID:6794511"
/translation="MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPE
EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
MSLRWAKRSRDRFDSLGNKNALFGIIQGSVYEDLRDISVKGLVEIGFDGYAVGGLAVG
EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
LFVTDGVVKIRNAKHKSDTSPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
LRYYQRLMAGLRKAIEEGKLESFVTEFYQRQGRPVPPLNVD"
misc_feature 443656..444747
/gene="tgt"
/locus_tag="SeAg_B0444"
/note="queuine tRNA-ribosyltransferase; Provisional;
Region: tgt; PRK00112"
/db_xref="CDD:178873"
misc_feature 443662..444765
/gene="tgt"
/locus_tag="SeAg_B0444"
/note="tRNA-guanine family transglycosylase; Region:
tgt_general; TIGR00449"
/db_xref="CDD:129541"
gene 444806..445138
/gene="yajC"
/locus_tag="SeAg_B0445"
/db_xref="GeneID:6794996"
CDS 444806..445138
/gene="yajC"
/locus_tag="SeAg_B0445"
/note="member of preprotein translocase; forms a
heterotrimer with SecD and SecF; links the
SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG
complex"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit YajC"
/protein_id="YP_002145389.1"
/db_xref="GI:197251743"
/db_xref="GeneID:6794996"
/translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAEAGYIAIALNDTTEVVIKRDFVAAVL
PKGTMKAL"
misc_feature 444812..445135
/gene="yajC"
/locus_tag="SeAg_B0445"
/note="preprotein translocase subunit YajC; Validated;
Region: yajC; PRK05585"
/db_xref="CDD:235518"
gene 445166..447013
/gene="secD"
/locus_tag="SeAg_B0446"
/db_xref="GeneID:6795563"
CDS 445166..447013
/gene="secD"
/locus_tag="SeAg_B0446"
/note="'part of the preprotein secretory system; when
complexed with proteins SecF and YajC, SecDFyajC
stimulates the proton motive force-driven protein
translocation, and appears to be required for the release
of mature proteins from the extracytoplasmic side of the
membrane'"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecD"
/protein_id="YP_002145390.1"
/db_xref="GI:197247540"
/db_xref="GeneID:6795563"
/translation="MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVA
ASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVA
LNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQGGNQLRAVMTDAR
LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
ATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
INIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
KQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIA
GIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVII
LYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI"
misc_feature 445169..445474
/gene="secD"
/locus_tag="SeAg_B0446"
/note="SecD export protein N-terminal TM region; Region:
SecD-TM1; pfam13721"
/db_xref="CDD:205896"
misc_feature 445478..447010
/gene="secD"
/locus_tag="SeAg_B0446"
/note="preprotein translocase subunit SecD; Reviewed;
Region: secD; PRK05812"
/db_xref="CDD:180271"
misc_feature 445523..445594
/gene="secD"
/locus_tag="SeAg_B0446"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 446480..446947
/gene="secD"
/locus_tag="SeAg_B0446"
/note="protein-export membrane protein, SecD/SecF family;
Region: 2A0604s01; TIGR00916"
/db_xref="CDD:162105"
gene 447024..447995
/gene="secF"
/locus_tag="SeAg_B0447"
/db_xref="GeneID:6793183"
CDS 447024..447995
/gene="secF"
/locus_tag="SeAg_B0447"
/note="'forms a complex with SecD and YajC; SecDFyajC
stimulates the proton motive force-driven protein
translocation; seems to modulate the cycling of SecA by
stabilizing its membrane-inserted state and appears to be
required for the release of mature proteins from the
extracytoplasmic side of the membrane; in some organisms,
such as Bacillus subtilis, SecD is fused to SecF'"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_002145391.1"
/db_xref="GI:197250831"
/db_xref="GeneID:6793183"
/translation="MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVR
GFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTE
GETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY
VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLT
MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
misc_feature 447063..447941
/gene="secF"
/locus_tag="SeAg_B0447"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:183847"
misc_feature 447141..447221
/gene="secF"
/locus_tag="SeAg_B0447"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 447363..447929
/gene="secF"
/locus_tag="SeAg_B0447"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:111266"
gene complement(447974..448090)
/locus_tag="SeAg_B0449"
/db_xref="GeneID:6795734"
CDS complement(447974..448090)
/locus_tag="SeAg_B0449"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145392.1"
/db_xref="GI:197250466"
/db_xref="GeneID:6795734"
/translation="MIVPHAIEFILDNKKPQHPAMLRLFSVMLTPAYGRMDG"
gene 448089..448436
/locus_tag="SeAg_B0448"
/db_xref="GeneID:6796677"
CDS 448089..448436
/locus_tag="SeAg_B0448"
/note="identified by match to protein family HMM PF01844"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145393.1"
/db_xref="GI:197250240"
/db_xref="GeneID:6796677"
/translation="MAIIPKNYARLESGYREKALKLFPWVCGRCSREFVYSNLRELTV
HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGSTVIAGEDAQKDVGEATYN
PFADLKAMMNKKK"
misc_feature 448140..448307
/locus_tag="SeAg_B0448"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:238038"
misc_feature order(448215..448217,448221..448229,448233..448235,
448266..448271,448281..448286,448293..448295,
448305..448307)
/locus_tag="SeAg_B0448"
/note="active site"
/db_xref="CDD:238038"
gene 448830..448982
/locus_tag="SeAg_B0450"
/note="conserved hypothetical protein; this gene contains
a frame shift which may be the result of sequencing error"
/pseudogene="unknown"
/db_xref="GeneID:6796207"
gene complement(449066..449929)
/locus_tag="SeAg_B0451"
/db_xref="GeneID:6793620"
CDS complement(449066..449929)
/locus_tag="SeAg_B0451"
/note="identified by match to protein family HMM PF03502"
/codon_start=1
/transl_table=11
/product="nucleoside-specific channel-forming protein tsx"
/protein_id="YP_002145394.1"
/db_xref="GI:197250407"
/db_xref="GeneID:6793620"
/translation="MKKTLLAVSAALALTSSFTANAAENDQPQYLSDWWHQSVNVVGS
YHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGSPLFME
IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPM
GLSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVPITDLWGGKLSYIGFTNFDWGSDL
GDDPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTG
WGGYLVVGYNF"
misc_feature complement(449069..449860)
/locus_tag="SeAg_B0451"
/note="nucleoside-specific channel-forming protein Tsx;
Provisional; Region: PRK15106"
/db_xref="CDD:237911"
gene complement(450229..450726)
/locus_tag="SeAg_B0452"
/db_xref="GeneID:6795132"
CDS complement(450229..450726)
/locus_tag="SeAg_B0452"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145395.1"
/db_xref="GI:197249918"
/db_xref="GeneID:6795132"
/translation="MSLTACAPQSEVRQMHQSISTLNKEMTQLNQETVKITQQNKLNA
ESTRGVYLLPGANTPARLESQIGTLRMTLLEITPVADGAHATLRIQGESRDPLPAFSA
TVEYGQLQGTTENYQEVNAQSLLVNAPASLLAPSDVNISLPLKGITPAQLGFIRIHDI
QPVNQ"
misc_feature complement(450232..450726)
/locus_tag="SeAg_B0452"
/note="hypothetical protein; Provisional; Region:
PRK11530"
/db_xref="CDD:183180"
gene 450801..450947
/locus_tag="SeAg_B0453"
/db_xref="GeneID:6792581"
CDS 450801..450947
/locus_tag="SeAg_B0453"
/note="identified by glimmer"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145396.1"
/db_xref="GI:197251442"
/db_xref="GeneID:6792581"
/translation="MVVRYTHKGTDPLSQKRSAFVVAPVQGKIVFSKSSGQDAVCIAH
FVSP"
gene 450920..451369
/gene="nrdR"
/locus_tag="SeAg_B0454"
/db_xref="GeneID:6792451"
CDS 450920..451369
/gene="nrdR"
/locus_tag="SeAg_B0454"
/note="identified by match to protein family HMM PF03477;
match to protein family HMM TIGR00244"
/codon_start=1
/transl_table=11
/product="transcriptional regulator NrdR"
/protein_id="YP_002145397.1"
/db_xref="GI:197250916"
/db_xref="GeneID:6792451"
/translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
ELVMPRVIKSNDVREPFNEDKLRSGMLRALEKRPVSADDVEMALNHIKSQLRATGERE
VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKDFGEEIARLQD"
misc_feature 450920..451363
/gene="nrdR"
/locus_tag="SeAg_B0454"
/note="transcriptional regulator NrdR; Validated; Region:
nrdR; PRK00464"
/db_xref="CDD:234774"
misc_feature 451064..451330
/gene="nrdR"
/locus_tag="SeAg_B0454"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
gene 451373..452476
/gene="ribD"
/locus_tag="SeAg_B0455"
/db_xref="GeneID:6794050"
CDS 451373..452476
/gene="ribD"
/locus_tag="SeAg_B0455"
/EC_number="1.1.1.193"
/EC_number="3.5.4.26"
/note="'riboflavin biosynthesis protein which catalyzes
the deamination and reduction steps in the riboflavin
biosynthesis pathway; catalyzes the formation of
5-amino-6-(5-phosphoribosylamino)uracil from
2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
and the formation of
5-amino-6-(5-phosphoribosylamino)uracil from
5-amino-6-(5-phosphoribitylamino)uracil'"
/codon_start=1
/transl_table=11
/product="bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase"
/protein_id="YP_002145398.1"
/db_xref="GI:197248845"
/db_xref="GeneID:6794050"
/translation="MQDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQ
RAGDPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQD
PNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGR
TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQAS
YPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQEDSRAWPDAVRTISVPAHN
GHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLC
ELPGLEKLADAPQFTFSEIRHVGPDVCLHMVSA"
misc_feature 451373..452473
/gene="ribD"
/locus_tag="SeAg_B0455"
/note="bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase; Provisional; Region: ribD; PRK10786"
/db_xref="CDD:182729"
misc_feature 451391..451729
/gene="ribD"
/locus_tag="SeAg_B0455"
/note="Riboflavin-specific deaminase. Riboflavin
biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase)
catalyzes the deamination of
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate, which is an intermediate step in the...;
Region: Riboflavin_deaminase-reductase; cd01284"
/db_xref="CDD:29827"
misc_feature order(451520..451528,451592..451597,451622..451624)
/gene="ribD"
/locus_tag="SeAg_B0455"
/note="catalytic motif [active]"
/db_xref="CDD:29827"
misc_feature order(451520..451522,451526..451528,451595..451597,
451622..451624)
/gene="ribD"
/locus_tag="SeAg_B0455"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29827"
misc_feature 451805..452461
/gene="ribD"
/locus_tag="SeAg_B0455"
/note="riboflavin-specific deaminase C-terminal domain;
Region: ribD_Cterm; TIGR00227"
/db_xref="CDD:129330"
gene 452565..453035
/gene="ribH"
/locus_tag="SeAg_B0456"
/db_xref="GeneID:6794999"
CDS 452565..453035
/gene="ribH"
/locus_tag="SeAg_B0456"
/EC_number="6.3.3.-"
/note="'RibE; 6,7-diimethyl-8-ribityllumazine synthase;
DMRL synthase; lumazine synthase; beta subunit of
riboflavin synthase; condenses
5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione
with L-3,4-dihydrohy-2-butanone-4-phosphate to generate
6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then
uses 2 molecules of DMRL to produce riboflavin (vitamin
B12); involved in the last steps of riboflavin
biosynthesis; forms a 60mer (icosahedral shell) in both
Bacillus subtilis and Escherichia coli; in Bacillus
subtilis this 60mer is associated with the riboflavin
synthase subunit (alpha) while in Escherichia coli it is
not'"
/codon_start=1
/transl_table=11
/product="6,7-dimethyl-8-ribityllumazine synthase"
/protein_id="YP_002145399.1"
/db_xref="GI:197248504"
/db_xref="GeneID:6794999"
/translation="MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQV
KDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLA
SVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
misc_feature 452607..453008
/gene="ribH"
/locus_tag="SeAg_B0456"
/note="lumazine synthase (6,7-dimethyl-8-ribityllumazine
synthase, LS), catalyzes the penultimate step in the
biosynthesis of riboflavin (vitamin B2); type-I; Region:
Lumazine_synthase-I; cd09209"
/db_xref="CDD:187742"
misc_feature order(452610..452612,452628..452630,452718..452729,
452736..452741,452745..452753,452757..452765,
452769..452771,452781..452783,452814..452816,
452820..452825,452829..452831,452835..452840,
452844..452852,452856..452864,452868..452882,
452889..452894,452904..452906,452910..452912,
452916..452918,452922..452924,452934..452936,
452946..452948,452970..452972,452979..452981,
452991..452993,453000..453005)
/gene="ribH"
/locus_tag="SeAg_B0456"
/note="homopentamer interface [polypeptide binding]; other
site"
/db_xref="CDD:187742"
misc_feature order(452628..452633,452730..452741,452802..452819,
452823..452825,452829..452834,452901..452915,
452946..452948,452970..452972,452979..452981)
/gene="ribH"
/locus_tag="SeAg_B0456"
/note="active site"
/db_xref="CDD:187742"
gene 453056..453475
/gene="nusB"
/locus_tag="SeAg_B0457"
/db_xref="GeneID:6794574"
CDS 453056..453475
/gene="nusB"
/locus_tag="SeAg_B0457"
/note="Regulates rRNA biosynthesis by transcriptional
antitermination"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_002145400.1"
/db_xref="GI:197249816"
/db_xref="GeneID:6794574"
/translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
VLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKV
AINEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK"
misc_feature 453071..453457
/gene="nusB"
/locus_tag="SeAg_B0457"
/note="Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role in
the regulation of ribosomal RNA biosynthesis in eubacteria
by modulating the efficiency of transcriptional
antitermination. NusB along with other Nus...; Region:
Terminator_NusB; cd00619"
/db_xref="CDD:238342"
misc_feature order(453071..453073,453083..453085)
/gene="nusB"
/locus_tag="SeAg_B0457"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238342"
gene 453557..454537
/gene="thiL"
/locus_tag="SeAg_B0458"
/db_xref="GeneID:6793008"
CDS 453557..454537
/gene="thiL"
/locus_tag="SeAg_B0458"
/EC_number="2.7.4.16"
/note="catalyzes the formation of thiamine diphosphate
from thiamine phosphate ant ATP"
/codon_start=1
/transl_table=11
/product="thiamine monophosphate kinase"
/protein_id="YP_002145401.1"
/db_xref="GI:197249517"
/db_xref="GeneID:6793008"
/translation="MACGEFSLIARYFDRVRSSRLDVETGIGDDCALLNIPEKQTLAI
STDTLVAGIHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLAA
FSDSLFEQLDYYDMQLIGGDTTRGPLSMTLGIHGLVPVGRALKRSGAKPGDWIYVTGT
LGDSAAGLAILRGDFRVGSWGDADYLVKRHLRPTPRILQGQALRDLASSAIDLSDGLI
SDLGHILQASNCGARIDLEALPDSEELWGHANDPEQKLRWMLSGGEDYELCFTVPELN
RGALDVALGHLGVPFTCIGQMTADIEGIAFVRDGEPVTFDWKGYDHFATP"
misc_feature 453557..454525
/gene="thiL"
/locus_tag="SeAg_B0458"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:180226"
misc_feature 453566..454450
/gene="thiL"
/locus_tag="SeAg_B0458"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature order(453581..453583,453638..453646,453779..453781,
453818..453820,453866..453868,453914..453922,
453992..453994,454190..454192,454196..454201)
/gene="thiL"
/locus_tag="SeAg_B0458"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature order(453590..453592,453647..453649,453692..453700,
453704..453706,453866..453868,453911..453913,
453920..453931,453947..453949,453953..453955)
/gene="thiL"
/locus_tag="SeAg_B0458"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene 454524..455030
/gene="pgpA"
/locus_tag="SeAg_B0459"
/db_xref="GeneID:6792859"
CDS 454524..455030
/gene="pgpA"
/locus_tag="SeAg_B0459"
/EC_number="3.1.3.27"
/note="hydrolyzes phosphatidylglycerophosphate to produce
phosphatidylglycerol and phosphate"
/codon_start=1
/transl_table=11
/product="phosphatidylglycerophosphatase A"
/protein_id="YP_002145402.1"
/db_xref="GI:197249910"
/db_xref="GeneID:6792859"
/translation="MPRHKDVAKSRLNLRNPWHLLATGFGSGLSPVVPGTMGSLAAIP
FWYLMTFLPWQLYSLVVMFGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMAL
PTTDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIG
HHWPLGII"
misc_feature 454575..455000
/gene="pgpA"
/locus_tag="SeAg_B0459"
/note="Phosphatidylglycerophosphatase A; a bacterial
membrane-associated enzyme involved in lipid metabolism;
Region: PgpA; cd06971"
/db_xref="CDD:133477"
misc_feature order(454584..454586,454650..454652,454698..454700,
454707..454712,454722..454727,454773..454775,
454782..454790,454797..454802,454806..454811,
454818..454820,454851..454859,454863..454871,
454875..454880,454884..454889,454998..455000)
/gene="pgpA"
/locus_tag="SeAg_B0459"
/note="tetramer interfaces [polypeptide binding]; other
site"
/db_xref="CDD:133477"
misc_feature order(454782..454784,454791..454796,454944..454946,
454953..454958)
/gene="pgpA"
/locus_tag="SeAg_B0459"
/note="binuclear metal-binding site [ion binding]; other
site"
/db_xref="CDD:133477"
gene complement(455134..456108)
/locus_tag="SeAg_B0460"
/db_xref="GeneID:6792573"
CDS complement(455134..456108)
/locus_tag="SeAg_B0460"
/note="identified by match to protein family HMM PF00248"
/codon_start=1
/transl_table=11
/product="oxidoreductase, aldo/keto reductase family"
/protein_id="YP_002145403.1"
/db_xref="GI:197249467"
/db_xref="GeneID:6792573"
/translation="MQYNTLGNTDLRVSRLCLGCMTFGEPSRGNHAWTLPEESSRPII
KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARRDEVVVATKVFHRVGDLPEGLSR
AQILRSIDDSLNRLGMEYVDILQIHRWDYTTPIEETLEALNDVVKAGKARYIGASSMH
ASQFAQALALQKQHGWAPFVTMQDHYNLIYREEEREMLPLCWQEGVAVIPWSPLARGR
LTRPWGETTARLVSDDVGKNLYAESDKNDAQIAERLAGVSEALGATRAQVALAWLLSK
RGVAAPIIGASREEQLDELLNAVDLTLKPEQIAELETPYKQHPVVGFK"
misc_feature complement(455143..456108)
/locus_tag="SeAg_B0460"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature complement(455173..456102)
/locus_tag="SeAg_B0460"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature complement(order(455224..455229,455236..455238,
455251..455262,455311..455313,455461..455478,
455560..455562,455635..455640,455725..455730,
455845..455847,455926..455928,455941..455943,
456046..456054))
/locus_tag="SeAg_B0460"
/note="active site"
/db_xref="CDD:119408"
misc_feature complement(order(455728..455730,455845..455847,
455926..455928,455941..455943))
/locus_tag="SeAg_B0460"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(456165..458027)
/gene="dxs"
/locus_tag="SeAg_B0461"
/db_xref="GeneID:6793379"
CDS complement(456165..458027)
/gene="dxs"
/locus_tag="SeAg_B0461"
/EC_number="2.2.1.7"
/note="catalyzes the formation of 1-deoxy-D-xylulose
5-phosphate from pyruvate and D-glyceraldehyde
3-phosphate"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_002145404.1"
/db_xref="GI:197249621"
/db_xref="GeneID:6793379"
/translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKDRRTVCVIGDGAITAGMA
FEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVMGLISTLKNMRDLKGPQ
FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPGYSKIFGDWLCETAA
KDSKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIY
STFLQRAYDQVIHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMT
PSDENECRQMLFTGYHYNDGPTAVRYPRGNAQGVALTPLEKLPIGKGLVKRHGEKLAI
LNFGTLMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAG
SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWQA"
misc_feature complement(456168..457997)
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="1-deoxy-D-xylulose-5-phosphate synthase; Region:
dxs; TIGR00204"
/db_xref="CDD:129308"
misc_feature complement(457164..457889)
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature complement(order(457479..457481,457485..457487,
457566..457577,457659..457661))
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature complement(456594..457061)
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature complement(order(456621..456623,456687..456692,
456738..456740,456747..456749,456822..456827,
456834..456836,456888..456896,456900..456905,
456912..456929,456933..456935,456942..456944,
456993..456995,457011..457013,457017..457019))
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(456696..456698,456702..456707,
456711..456716,456741..456743,456747..456749,
456828..456830,456834..456839,456918..456926,
456933..456935,456993..456995))
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(order(456834..456836,456843..456845,
456918..456920,456924..456926))
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature complement(456195..456545)
/gene="dxs"
/locus_tag="SeAg_B0461"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(458051..458950)
/gene="ispA"
/locus_tag="SeAg_B0462"
/db_xref="GeneID:6796312"
CDS complement(458051..458950)
/gene="ispA"
/locus_tag="SeAg_B0462"
/EC_number="2.5.1.10"
/note="identified by match to protein family HMM PF00348"
/codon_start=1
/transl_table=11
/product="geranyltranstransferase"
/protein_id="YP_002145405.1"
/db_xref="GI:197248755"
/db_xref="GeneID:6796312"
/translation="MDFTQQLQACVTQANQALSRFIAPLPFQNTPVVEAMQYGALLGG
KRLRPFLVYATGQMFGVSTATLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
IKFGEANAILAGDALQTLAFAIISDAPMPEVADRDRIAMIAELANASGIAGMCGGQAL
DLAAEGQRITLDALERIHRHKTGALIRAAVRLGALSAGDKGRNTLPILDRYAESIGLA
FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARNKARDLIEDARQSLHQ
LAAQSLDTSALEALANYIIQRDK"
misc_feature complement(458054..458950)
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature complement(458060..458866)
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(458210..458212,458225..458227,
458240..458242,458270..458272,458279..458284,
458396..458398,458405..458410,458468..458470,
458477..458479,458663..458668,458687..458692,
458696..458704,458708..458716,458723..458725))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(458687..458716)
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(458210..458212,458225..458227,
458240..458242,458270..458272,458279..458284,
458408..458410,458468..458470,458663..458668,
458687..458689,458696..458701))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(458279..458284,458408..458410,
458663..458668,458687..458689,458696..458701))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(458408..458410,458468..458470,
458663..458668,458687..458689,458696..458701))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(458204..458218,458225..458242,
458258..458263,458633..458671,458678..458683))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(458210..458212,458225..458227,
458240..458242,458270..458272,458279..458284))
/gene="ispA"
/locus_tag="SeAg_B0462"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(458951..459193)
/gene="xseB"
/locus_tag="SeAg_B0463"
/db_xref="GeneID:6795644"
CDS complement(458951..459193)
/gene="xseB"
/locus_tag="SeAg_B0463"
/EC_number="3.1.11.6"
/note="catalyzes the bidirectional exonucleolytic cleavage
of DNA"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII small subunit"
/protein_id="YP_002145406.1"
/db_xref="GI:197250253"
/db_xref="GeneID:6795644"
/translation="MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQ
LARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE"
misc_feature complement(458960..459193)
/gene="xseB"
/locus_tag="SeAg_B0463"
/note="exodeoxyribonuclease VII small subunit;
Provisional; Region: PRK00977"
/db_xref="CDD:179195"
gene 459403..460851
/gene="thiI"
/locus_tag="SeAg_B0464"
/db_xref="GeneID:6796220"
CDS 459403..460851
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="Required for the synthesis of the thiazole moiety"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein ThiI"
/protein_id="YP_002145407.1"
/db_xref="GI:197250561"
/db_xref="GeneID:6796220"
/translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAQYREQL
EGKTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLL
LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVA
ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
DFARTMPEYCGVISKSPTVKAIKAKIEAEEENFDFSILDKVVEEANNVDIREIAQQTQ
QEVVEVETVSGFGANDVILDIRSVDEQDDKPLKVEGVDVVSLPFYKLSTKFGDLDQSK
TWLLWCERGVMSRLQALYLREQGFANVKVYRP"
misc_feature 459403..460848
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="tRNA s(4)U8 sulfurtransferase; Provisional; Region:
PRK01269"
/db_xref="CDD:179268"
misc_feature 459406..459912
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="THUMP domain of thiamine biosynthesis protein ThiI;
Region: THUMP_ThiI; cd11716"
/db_xref="CDD:212585"
misc_feature 459940..460461
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the Adenosine
Nucleotide Hydrolysis suoerfamily and predicted to bind to
Adenosine nucleotide; Region: ThiI; cd01712"
/db_xref="CDD:30167"
misc_feature order(459949..459957,459961..459972,460027..460029,
460033..460035)
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30167"
misc_feature 460615..460845
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature 460768..460770
/gene="thiI"
/locus_tag="SeAg_B0464"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene complement(460895..461692)
/gene="phnV"
/locus_tag="SeAg_B0465"
/db_xref="GeneID:6794476"
CDS complement(460895..461692)
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="identified by match to protein family HMM PF00528;
match to protein family HMM TIGR03255"
/codon_start=1
/transl_table=11
/product="2-aminoethylphosphonate ABC transport system,
membrane component PhnV"
/protein_id="YP_002145408.1"
/db_xref="GI:197250070"
/db_xref="GeneID:6794476"
/translation="MLIWSPKGRAAAGVVASVLFIVFFFLPLAVILMSSLSQQWNGIL
PSGFTLNHFVNALHGAAWDALLASLTIGFCASLFALLCGVWAALALRQYGVKTQKWLS
MVFYLPSAIPSVSVGLGILVAFSQGPLQMNGTLWIVLTAHFVLISAFTFSNVSTGLAR
ISADIENVASSLGASPWYRLRHVTLPLLMPWMVSALALSLSLSMGELGATMMIYPPGW
TTLPVAIFSLTDRGNIADGAALTIVLVAITLLLMMKLERIAKRLGQK"
misc_feature complement(460997..461692)
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism]; Region: PotC; COG1177"
/db_xref="CDD:31370"
misc_feature complement(460979..461500)
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(460979..460984,460991..460996,
461024..461029,461057..461062,461069..461080,
461099..461101,461108..461113,461153..461155,
461204..461206,461213..461218,461228..461230,
461234..461239,461246..461248,461252..461254,
461258..461260,461264..461266,461330..461332,
461336..461341,461348..461377,461381..461392,
461420..461422,461435..461440,461447..461452))
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(461063..461080,461330..461374))
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(460994..460996,461024..461026,
461033..461035,461060..461062,461279..461281,
461330..461332))
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(461132..461134,461144..461149,
461165..461203))
/gene="phnV"
/locus_tag="SeAg_B0465"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(461695..462555)
/gene="phnU"
/locus_tag="SeAg_B0466"
/note="'2-aminoethylphosphonate ABC transporter, permease
protein; this gene contains a premature stop which may be
the result of sequencing error; identified by match to
protein family HMM PF00528; match to protein family HMM
TIGR03226'"
/pseudogene="unknown"
/db_xref="GeneID:6794167"
gene complement(462558..463667)
/gene="phnT"
/locus_tag="SeAg_B0467"
/db_xref="GeneID:6796003"
CDS complement(462558..463667)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="identified by match to protein family HMM PF00005;
match to protein family HMM PF08402; match to protein
family HMM TIGR03258"
/codon_start=1
/transl_table=11
/product="2-aminoethylphosphonate ABC transporter
ATP-binding protein"
/protein_id="YP_002145409.1"
/db_xref="GI:197251314"
/db_xref="GeneID:6796003"
/translation="MLMKTTAVHAPASQGTSGIVLDSLRVAYHGNVVLKPLSLTIEPG
EVLALIGPSGSGKTTVLRAVAGFVQPAGGRILIGDTDVTHLPPYKRGLAMVVQNYALF
PHLKVEDNVAFGLRAQKQPKALINERVTQALKTVGMSDYAARYPHQLSGGQQQRVAIA
RAIAVRPRVLLLDEPLSALDAQIRHNMVEEIARLHRELPELTILYVTHDQTEALTLAD
KIGIMKDGSLIAHGETRALYQHPPNRFAAEFLGRANILSAIALGITEAPGLVDVSCGG
AVIRAFSRGSHHGYNKLLCIRPQHLSLTPRSDYSNRFNATLQSVHWQGDLTHLLCDVA
GETVRMVLTHVNPLPRVGDKLALWFEPDDAVLIEV"
misc_feature complement(462561..463628)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT; Region: PhnT; TIGR03258"
/db_xref="CDD:132302"
misc_feature complement(462915..463613)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature complement(463494..463517)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(463044..463046,463146..463151,
463377..463379,463491..463499,463503..463508))
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(463377..463388)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(463194..463223)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(463146..463163)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(463128..463139)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(463038..463058)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
misc_feature complement(462567..462788)
/gene="phnT"
/locus_tag="SeAg_B0467"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene complement(463673..464686)
/gene="phnS"
/locus_tag="SeAg_B0468"
/db_xref="GeneID:6794599"
CDS complement(463673..464686)
/gene="phnS"
/locus_tag="SeAg_B0468"
/note="identified by match to protein family HMM PF01547;
match to protein family HMM TIGR03227"
/codon_start=1
/transl_table=11
/product="2-aminoethylphosphonate ABC transporter
substrate-binding protein"
/protein_id="YP_002145410.1"
/db_xref="GI:197247982"
/db_xref="GeneID:6794599"
/translation="MKLSRLALLSVFALASAPSWAESVVTVYSIDGLHDGDNSWYQVQ
FDAFTKATGITVRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAEKLLANFN
TDAASAIPDANNLYSPLVKNYLSFIYNSKLLKTAPASWQDLLDGKFKNKLQYSTPGQA
ADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPSASTGKLTALVNKGEIYVANGDLQ
MNLAQMERNPNVKIFWPANDKGERSALAIPYVIGLVQGAPQSENGKKLINFLLSKEAQ
TRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDDVAVSLSADISRWHKVT
ESE"
misc_feature complement(463676..464629)
/gene="phnS"
/locus_tag="SeAg_B0468"
/note="2-aminoethylphosphonate ABC transporter
substrate-binding protein; Provisional; Region: PRK15046"
/db_xref="CDD:185006"
misc_feature complement(463688..464554)
/gene="phnS"
/locus_tag="SeAg_B0468"
/note="ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: AfuA; COG1840"
/db_xref="CDD:32025"
gene complement(464884..465603)
/locus_tag="SeAg_B0469"
/db_xref="GeneID:6797231"
CDS complement(464884..465603)
/locus_tag="SeAg_B0469"
/note="identified by match to protein family HMM PF00392;
match to protein family HMM PF07702; match to protein
family HMM TIGR03337"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002145411.1"
/db_xref="GI:197247490"
/db_xref="GeneID:6797231"
/translation="MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFN
TTRITIRESLAQLESSGLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTA
LLSGVLTTVPVEVMEPLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD
LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGR
VLDLDIEYWRHDSLRIEVDTH"
misc_feature complement(464887..465579)
/locus_tag="SeAg_B0469"
/note="transcriptional regulator protein; Region: phnR;
TIGR03337"
/db_xref="CDD:132380"
misc_feature complement(465382..465579)
/locus_tag="SeAg_B0469"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(465391..465402,465406..465411,
465439..465441,465448..465453,465457..465471,
465493..465498,465502..465504,465571..465573,
465577..465579))
/locus_tag="SeAg_B0469"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(464905..465324)
/locus_tag="SeAg_B0469"
/note="UTRA domain; Region: UTRA; pfam07702"
/db_xref="CDD:203732"
gene 465743..466846
/gene="phnW"
/locus_tag="SeAg_B0470"
/db_xref="GeneID:6796156"
CDS 465743..466846
/gene="phnW"
/locus_tag="SeAg_B0470"
/EC_number="2.6.1.37"
/note="catalyzes the formation of phosphonoacetaldehyde
from 2-aminoethylphosphonate and pyruvate"
/codon_start=1
/transl_table=11
/product="2-aminoethylphosphonate--pyruvate transaminase"
/protein_id="YP_002145412.1"
/db_xref="GI:197248362"
/db_xref="GeneID:6796156"
/translation="MTSRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIR
QQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMSGL
MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHR
YGKTYIVDAMSSFGGIPMDIATLHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGR
SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQ
RSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS
QSDCFRIGNIGEVYAADITALLTAIRTAMYWMK"
misc_feature 465743..466840
/gene="phnW"
/locus_tag="SeAg_B0470"
/note="Serine-pyruvate aminotransferase/archaeal aspartate
aminotransferase [Amino acid transport and metabolism];
Region: COG0075"
/db_xref="CDD:30424"
misc_feature 465749..466837
/gene="phnW"
/locus_tag="SeAg_B0470"
/note="2-aminoethylphosphonate--pyruvate transaminase;
Region: transamin_PhnW; TIGR02326"
/db_xref="CDD:131379"
misc_feature order(465938..465943,465950..465952,466157..466159,
466244..466246,466253..466255,466313..466315,
466322..466324)
/gene="phnW"
/locus_tag="SeAg_B0470"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 466322..466324
/gene="phnW"
/locus_tag="SeAg_B0470"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 466856..467665
/gene="phnX"
/locus_tag="SeAg_B0471"
/db_xref="GeneID:6796408"
CDS 466856..467665
/gene="phnX"
/locus_tag="SeAg_B0471"
/EC_number="3.11.1.1"
/note="catalyzes the degradation of phosphonoacetaldehyde
to acetaldehyde and phosphate"
/codon_start=1
/transl_table=11
/product="phosphonoacetaldehyde hydrolase"
/protein_id="YP_002145413.1"
/db_xref="GI:197251419"
/db_xref="GeneID:6796408"
/translation="MNRIHAVILDWAGTTVDFGSFAPTQIFVEAFRQAFDVEITLAEA
RVPMGLGKWQHIEALGKLPAVDARWQAKFGRSMSAADIDAIYAAFMPLQIAKVIDFSS
PIAGVIDTIAALRAEGIKIGSCSGYPRAVMERLVPAAAEHGYRPDHWVATDDLVAGGR
PGPWMALQNVIALGIDAVAHCVKVDDAAPGISEGLNAGMWTVGLAVSGNEFGATWDAY
QTMSKEDVAVRREHAASKLYAAGAHYVVDSLADLPEVIAHINARLAQGERP"
misc_feature 466856..467662
/gene="phnX"
/locus_tag="SeAg_B0471"
/note="phosphonoacetaldehyde hydrolase; Provisional;
Region: PRK13478"
/db_xref="CDD:184075"
misc_feature 467147..467464
/gene="phnX"
/locus_tag="SeAg_B0471"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 467228..467230
/gene="phnX"
/locus_tag="SeAg_B0471"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(467762..468352)
/locus_tag="SeAg_B0472"
/db_xref="GeneID:6794405"
CDS complement(467762..468352)
/locus_tag="SeAg_B0472"
/note="identified by match to protein family HMM PF01965;
match to protein family HMM TIGR01383"
/codon_start=1
/transl_table=11
/product="DJ-1 family protein"
/protein_id="YP_002145414.1"
/db_xref="GI:197250355"
/db_xref="GeneID:6794405"
/translation="MSAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLT
IVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIV
AAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGT
AIDFGLKIIDLLAGREKAHEVASQLVMAAGIYNYYE"
misc_feature complement(467765..468352)
/locus_tag="SeAg_B0472"
/note="oxidative-stress-resistance chaperone; Provisional;
Region: PRK11574"
/db_xref="CDD:183210"
misc_feature complement(467837..468340)
/locus_tag="SeAg_B0472"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135"
/db_xref="CDD:153229"
misc_feature complement(468032..468034)
/locus_tag="SeAg_B0472"
/note="conserved cys residue [active]"
/db_xref="CDD:153229"
gene complement(468315..469226)
/gene="panE"
/locus_tag="SeAg_B0473"
/db_xref="GeneID:6795079"
CDS complement(468315..469226)
/gene="panE"
/locus_tag="SeAg_B0473"
/EC_number="1.1.1.169"
/note="ketopantoate reductase; catalyzes the NADPH
reduction of ketopantoate to pantoate; functions in
pantothenate (vitamin B5) biosynthesis"
/codon_start=1
/transl_table=11
/product="2-dehydropantoate 2-reductase"
/protein_id="YP_002145415.1"
/db_xref="GI:197248569"
/db_xref="GeneID:6795079"
/translation="MKITVLGCGALGQLWLSALCKHGHDVQGWLRVPQPYCSVNLIDT
DGSFFNESLTANDPDFLAKSELLLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGT
IEELQNIQQPMLMGTITHAARRDGNIIIHVANGTTHIGPAREQDGDYSYLADILQGVL
PDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHPDEINAICEEVAAVIERE
GYHTSADDLRYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRARVHGLAVP
ENSRLFEMVKRKESEYERSGTGMPRPW"
misc_feature complement(468345..469226)
/gene="panE"
/locus_tag="SeAg_B0473"
/note="2-dehydropantoate 2-reductase; Reviewed; Region:
PRK06522"
/db_xref="CDD:180603"
misc_feature complement(468795..469220)
/gene="panE"
/locus_tag="SeAg_B0473"
/note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
pfam02558"
/db_xref="CDD:202282"
misc_feature complement(468360..468725)
/gene="panE"
/locus_tag="SeAg_B0473"
/note="Ketopantoate reductase PanE/ApbA C terminal;
Region: ApbA_C; pfam08546"
/db_xref="CDD:203977"
gene 469352..469843
/locus_tag="SeAg_B0474"
/db_xref="GeneID:6797018"
CDS 469352..469843
/locus_tag="SeAg_B0474"
/note="nucleotide binding property based on structural
studies of Haemophilus influenzae crystallized protein in
PDB Accession Number 1IN0 and NMR studies of Escherichia
coli YajQ; the YajQ protein from Pseudomonas synringae
appears to play a role in activation of bateriophage phi6
segment L transcription"
/codon_start=1
/transl_table=11
/product="nucleotide-binding protein"
/protein_id="YP_002145416.1"
/db_xref="GI:197249428"
/db_xref="GeneID:6797018"
/translation="MPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEATIELNDA
NKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEAKLKQGI
ESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQPFQFKN
FRD"
misc_feature 469355..469837
/locus_tag="SeAg_B0474"
/note="Proteins similar to Escherichia coli YajQ; Region:
YajQ_like; cd11740"
/db_xref="CDD:213038"
gene complement(469890..471254)
/locus_tag="SeAg_B0475"
/db_xref="GeneID:6793339"
CDS complement(469890..471254)
/locus_tag="SeAg_B0475"
/note="identified by match to protein family HMM PF07690"
/codon_start=1
/transl_table=11
/product="inner membrane transport protein YajR"
/protein_id="YP_002145417.1"
/db_xref="GI:197247536"
/db_xref="GeneID:6793339"
/translation="MNDYKMTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
ASEALIGIAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLAVFVAGSVIAALSHSIW
GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTH
SLGLNALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLLKLN
FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMVIAFAAVVPFIIYAEVKRR
MKQVFLFCVGLIIVAEIVLWGAGQHFWELVIGVQLFFLAFNLMEALLPSLISKESPAG
YKGTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPP
YVSSLRVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQL
ISKG"
misc_feature complement(470100..471215)
/locus_tag="SeAg_B0475"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(470190..471206)
/locus_tag="SeAg_B0475"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature complement(order(470202..470204,470211..470216,
470223..470228,470235..470240,470271..470273,
470280..470285,470295..470297,470304..470309,
470316..470318,470460..470462,470472..470474,
470481..470483,470493..470495,470505..470507,
470547..470549,470556..470561,470568..470573,
470580..470582,470811..470813,470829..470834,
470841..470846,470880..470882,470889..470894,
470901..470906,470913..470918,471048..471053,
471057..471062,471072..471074,471081..471086,
471093..471095,471147..471152,471156..471164,
471171..471173))
/locus_tag="SeAg_B0475"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 471800..473311
/locus_tag="SeAg_B0476"
/db_xref="GeneID:6793179"
CDS 471800..473311
/locus_tag="SeAg_B0476"
/note="identified by match to protein family HMM PF08238"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145418.1"
/db_xref="GI:197251172"
/db_xref="GeneID:6793179"
/translation="MEIKYLSLCILAGILFVSQVNASENNGKDDVKYAALTQKDLDAL
PVEKRASVLDELGFIHEYGIGVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGV
AKDSAQANMYAKKMNLDNLLIEQEYIDKFSQEIYAAKALADTDKSQRPEFINALFNLL
NNRPESDALFFSRIGFNQEKTFRLATLWGQDGDPQMDYQLGLLALNDFSGHYVDEPYK
ARPASLKWFRAAAEKGVVEAQSLLGGIYSGGEGDEWGIKPDIQEAQKWYGQAAEQGDS
DAQIALGKIYYSGATGRTDYAKALALFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCD
KAWSYYKKASRYVGKKVEEKIFLSKCAADIQSRKNNADALPKVTLKKESIFSRGITAK
PKECALIFQIGTDKIRNMANLHITLELKNDDGVATEETLMIPPFGLNTLGIDMQNHAV
DPLVTSYDLPLYTQDFCHGIGDIHFTLKSATATINDKNVDLLKADSVRFLDKE"
misc_feature 471944..472678
/locus_tag="SeAg_B0476"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 471962..472051
/locus_tag="SeAg_B0476"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 472505..472624
/locus_tag="SeAg_B0476"
/note="Sel1 repeat; Region: Sel1; pfam08238"
/db_xref="CDD:203883"
misc_feature 472754..472828
/locus_tag="SeAg_B0476"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene 473323..474813
/locus_tag="SeAg_B0477"
/db_xref="GeneID:6793498"
CDS 473323..474813
/locus_tag="SeAg_B0477"
/note="identified by match to protein family HMM PF08238"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002145419.1"
/db_xref="GI:197251704"
/db_xref="GeneID:6793498"
/translation="MIKQKWNLLLLLGLSFASVCQAGDDIDALYSRIAQKDIQALNEL
KALAKDNNAQALAELGFIYEYGVSVSVDIPQAIKYYEQACDLDGDYGCFNAAYFYEYG
IGTQKDITQAKILAKQLREKTNLSNINLDKKVSERIIGSVYSNKLEAYRDLSFRPHFI
QGLSFYFYAPQSDERKLLSRIGFDSSHLARIAILWAREGDPEVAYQTAKLVSTLYFNN
ETKTIDIAEALKWLRISAEKGDADSQTLLGFLYEHAGLGLQPDGEKARKWYEMAAQQG
NGEALYTLGRMYYSGVMVNVDYDKALYFFKKAYEKELQAAADYLAQMYFNGQSVDVDC
QQSWHYYDNSYIKKMTQRDYLDYCEKDRKRRNDFSQQLPELTLEKYAGLFGRIDNIPL
CQIGFVVNTNKLIHVANLRVELILKNDVGVSDERMVAFPPLGLNTLGAEQGMGDSFKS
MGYILMKNGDLCDYHKLTFTVKSATATINGKKVDLLKTDNLHIIQN"
misc_feature <473419..473688
/locus_tag="SeAg_B0477"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 473479..473580
/locus_tag="SeAg_B0477"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature <473908..474432
/locus_tag="SeAg_B0477"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 474043..474153
/locus_tag="SeAg_B0477"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 474154..474255
/locus_tag="SeAg_B0477"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(474898..475785)
/gene="cyoE"
/locus_tag="SeAg_B0478"
/db_xref="GeneID:6795522"
CDS complement(474898..475785)
/gene="cyoE"
/locus_tag="SeAg_B0478"
/EC_number="2.5.1.-"
/note="converts protoheme IX and farnesyl diphosphate to
heme O"
/codon_start=1
