LOCUS NC_011883 2873437 bp DNA circular BCT 23-DEC-2012
DEFINITION Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
chromosome, complete genome.
ACCESSION NC_011883
VERSION NC_011883.1 GI:220903286
DBLINK Project: 59213
BioProject: PRJNA59213
KEYWORDS .
SOURCE Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
ORGANISM Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
Desulfovibrionaceae; Desulfovibrio.
REFERENCE 1 (bases 1 to 2873437)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Lu,M., Kiss,H.,
Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ovchinnikova,G. and Hazen,T.C.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2873437)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2873437)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Lu,M., Kiss,H.,
Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Ovchinnikova,G. and Hazen,T.C.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP001358.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4082401
Source DNA available from Terry C. Hazen (TCHazen@lbl.gov)
Organism available from ATCC: ATCC 27774
Contacts: Terry C. Hazen (TCHazen@lbl.gov)
David Bruce (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2873437
/organism="Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774"
/mol_type="genomic DNA"
/strain="ATCC 27774"
/sub_species="desulfuricans"
/culture_collection="ATCC:27774"
/db_xref="taxon:525146"
gene complement(394..618)
/locus_tag="Ddes_0001"
/db_xref="GeneID:7286102"
CDS complement(394..618)
/locus_tag="Ddes_0001"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478599.1"
/db_xref="GI:220903287"
/db_xref="GeneID:7286102"
/translation="MMYFQPLSGIALVAQNTPPDTTDVIAYLPSVINDITAAIDQLQS
ADSASSFMQTQWRMAAANMLGIGAVTGGWA"
gene complement(649..2220)
/locus_tag="Ddes_0002"
/db_xref="GeneID:7283653"
CDS complement(649..2220)
/locus_tag="Ddes_0002"
/inference="protein motif:PFAM:PF01551"
/note="PFAM: Peptidase M23;
KEGG: dvl:Dvul_0008 peptidase M23B"
/codon_start=1
/transl_table=11
/product="peptidase M23"
/protein_id="YP_002478600.1"
/db_xref="GI:220903288"
/db_xref="InterPro:IPR016047"
/db_xref="GeneID:7283653"
/translation="MGLPVELDKALAHAYKLLMGSKMKRLWLAGVLLLAVLGFVVARH
AGLPGLSAVSGPESAQEQAAVPNSEQTQEHDGSQGNPSLQNPENNPAGSGEPDSSSAS
SPSSDSTNADHADLAADAAADAADAGAAPGEAVVRGTFERGDTVSKVLENSGGQGTHQ
YVSAARQVFSMRSFREGQPYVVVTDTESGKVKRFEYEIDSHHRLVVEGTDAPAARLEP
IEYVVLLDSVAGTINDNLFQAVADMGESPQMALKLADLFGAEINFIRDLQQGDSFAVL
VEKRYREGEYKGYGRILAAHFTNKGKTYEAYIFKDGKRAEYYNRKGESLRKTLLQAPL
AFTRITSRFTNSRLHPILNYRRAHHGVDYAAPTGTPVKAVGDGVVTQRSWAGGYGNQI
IVKHTAGLESMYAHLSGYARGLAKGQRVRQGQVIGFVGSTGLATGPHLDFRLRQNGKF
IDPAKAINPRGEPVSKKAMAEFEKIVALELAYLNGEKPLSEYEPGSIVPDKPIPAPEK
PAEKEKSKPAKKGRR"
misc_feature complement(862..1155)
/locus_tag="Ddes_0002"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 2640..4013
/locus_tag="Ddes_0003"
/db_xref="GeneID:7283654"
CDS 2640..4013
/locus_tag="Ddes_0003"
/inference="protein motif:PFAM:PF08299"
/note="PFAM: Chromosomal replication initiator DnaA
domain; Chromosomal replication initiator DnaA;
KEGG: dvu:DVU0001 chromosomal replication initiator
protein DnaA"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator DnaA
domain-containing protein"
/protein_id="YP_002478601.1"
/db_xref="GI:220903289"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:7283654"
/translation="MLKKELREILAENRATAGETWLESLTLRQEKDTLRVVFPHMYFA
DWFSLHRRAAFEDALRRHFTRLHEDSVPRIVYESAAPGAFAARTLPQPVSPPPGPDCR
SNTMAEAEDPFADFICNDKNAFPLATARDLAADTTSTAYNPFLVCGRSGTGKSRLLQA
MTCVMSRTADPARMICSSAARFCSEHLVWARRPELFWLRYDVLVLDDIQDLAGHDAWQ
RKLVTIIDTCPGRQKNLPGIPSGEDIPSAGEQIHRAAPRMIFACSGQPQALKALDERL
RSRLESGLVVELMEPDLDVRLRYLQVICKERRLPLTREQLLFLAQRCSQFRLLQGLML
KVGAYCAVKGNNLTQSDMENIVRTGVAEKMPGCREILGEVARRLNLRPEDVLGAKRRP
DLVLARQVSMYICRRKLGLSYPELGRAFGGRDHSTVIYAINKIKKLMVSNKSVHQLVT
EIEMKTP"
misc_feature 2694..4004
/locus_tag="Ddes_0003"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 3060..3656
/locus_tag="Ddes_0003"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 3738..4004
/locus_tag="Ddes_0003"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(3807..3809,3831..3836,3855..3857,3873..3881,
3906..3920,3927..3929,3936..3941)
/locus_tag="Ddes_0003"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 4162..5316
/locus_tag="Ddes_0004"
/db_xref="GeneID:7283655"
CDS 4162..5316
/locus_tag="Ddes_0004"
/EC_number="2.7.7.7"
/inference="protein motif:TFAM:TIGR00663"
/note="KEGG: dvu:DVU0002 DNA polymerase III, beta subunit;
TIGRFAM: DNA polymerase III, beta subunit;
PFAM: DNA polymerase III beta chain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_002478602.1"
/db_xref="GI:220903290"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:7283655"
/translation="MKLTVNKEQIIEGLLKAVAIIPAKAGAQYLRSIWLKAEDGGLSV
MSTDANIEFTGRYQAEVAQPGLIGVQGRAFVDLVRQLPSGVLHLSLDEASGNLLVEQG
RRTYKLPVSGAEWFQNFSSFPEENTVTWSGDFLQDLLDKVAFCISDDDAMDAIACLCM
MPKGNGRIDVCGLNGHQFALVSFTHDELAERLPEEGILIQKKYLQDIKKWLGVDEIEL
SITGKRLYLRSMSKAETLSLPRATHQYPDYSIFMSKLASEDMHPMTLDRKEAMEALGR
ILIFNTESDRCTYMDLSSGEALLSAQGQDVGSASESLEVTYGGDIKRIAFPTRNLMDV
LAHFVSGKTDMMLTGAEGPCGIRGADDPDYTVIIMPMKVSETTYYSEEDV"
misc_feature 4162..5313
/locus_tag="Ddes_0004"
/note="DNA polymerase III subunit beta; Provisional;
Region: PRK14947"
/db_xref="CDD:184911"
misc_feature 4162..5277
/locus_tag="Ddes_0004"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(4231..4233,4375..4377,4396..4398,4765..4767)
/locus_tag="Ddes_0004"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(4378..4380,4387..4389,4468..4470,4474..4476,
4996..4998,5089..5094)
/locus_tag="Ddes_0004"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(4678..4680,4684..4695,5140..5142,5266..5277)
/locus_tag="Ddes_0004"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(4678..4680,4684..4689,4921..4923,5026..5028,
5065..5070,5149..5151,5266..5277)
/locus_tag="Ddes_0004"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 5316..7721
/locus_tag="Ddes_0005"
/db_xref="GeneID:7283656"
CDS 5316..7721
/locus_tag="Ddes_0005"
/EC_number="5.99.1.3"
/inference="protein motif:TFAM:TIGR01059"
/note="KEGG: dvl:Dvul_0005 DNA gyrase, B subunit;
TIGRFAM: DNA gyrase, B subunit;
PFAM: DNA gyrase subunit B domain protein; ATP-binding
region ATPase domain protein; TOPRIM domain protein; DNA
topoisomerase type IIA subunit B region 2 domain protein;
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_002478603.1"
/db_xref="GI:220903291"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:7283656"
/translation="MALQNPVDGGYTASSITILEGLSAVRKRPAMYIGSTDARGLHHL
VYEVVDNSIDEAMAGFCTRITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTK
LHAGGKFDNTSYKVSGGLHGVGVSCVNALSEDLTVTVRRDGKRYRQRYSRGLPQDELT
VIGEGVDGHGTTVRFKPDEEIFEVSEFSYDTLKKRFEELAYLNKGLFIECIDERIGET
HVFHAEGGIRQFVSDLNSGEQGIHSIIFGEGVVDNVTVDFALQYNAGYKENILTFANN
IRTKEGGTHLVGFRTALTRAINGYIKGQADLVKKMKNTSLSGDDVREGLTAVISVKLP
QPQFEGQTKTKLGNSEVAGLVSGVVYDRLNIYFEENPKDIRLIIEKAVDAARARDAAR
RAKELVRRKGALSDNALPGKLADCQSKDPSESELFIVEGDSAGGSAKQGRNPRNQAIL
PLRGKILNTERTRFDKMLANKEVKALITAMGAGIGEDDTDLEKLRYHKIIIMTDADVD
GAHIRTLLLTFFFRQYQEMVERGFVYIAQPPLYRVHNSRMEKFIKDDAELNSFLLSRV
SEDVIVTATNGKEYTGTALSNLVERIETLELRLDDAEMTGTPRDLFLALTTYPEQVDA
AMLERQDAGLTEWLNERGYMLTLETEQSEDDEERLFAIFENTGGHQSRRGMEFFASRL
YRMTWQLFSELREECGGLDFVMRRKDGETPAQNLFDLMRMVLDEARKGINIQRYKGLG
EMNPEQLWVTTMNPENRILLQVSVDDANEASDAFMELMGDRVEPRREFIERNALAVHD
LDI"
misc_feature 5346..7718
/locus_tag="Ddes_0005"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 5436..5744
/locus_tag="Ddes_0005"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(5454..5456,5466..5468,5475..5477,5541..5543,
5547..5549,5553..5555,5559..5564,5679..5690,5724..5726,
5730..5732)
/locus_tag="Ddes_0005"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 5466..5468
/locus_tag="Ddes_0005"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(5553..5555,5559..5561,5679..5681,5685..5687)
/locus_tag="Ddes_0005"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 5988..6506
/locus_tag="Ddes_0005"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 6138..6140
/locus_tag="Ddes_0005"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(6318..6320,6327..6332,6336..6338,6471..6476,
6486..6488,6498..6500)
/locus_tag="Ddes_0005"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(6336..6338,6342..6344)
/locus_tag="Ddes_0005"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 6585..6929
/locus_tag="Ddes_0005"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(6603..6608,6615..6617,6825..6827,6831..6833,
6837..6839)
/locus_tag="Ddes_0005"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(6603..6605,6825..6827)
/locus_tag="Ddes_0005"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 7491..7685
/locus_tag="Ddes_0005"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 7987..10554
/locus_tag="Ddes_0006"
/db_xref="GeneID:7283657"
CDS 7987..10554
/locus_tag="Ddes_0006"
/EC_number="5.99.1.3"
/inference="protein motif:TFAM:TIGR01063"
/note="KEGG: dvl:Dvul_0004 DNA gyrase, A subunit;
TIGRFAM: DNA gyrase, A subunit;
PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase
repeat beta-propeller"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_002478604.1"
/db_xref="GI:220903292"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005743"
/db_xref="InterPro:IPR006691"
/db_xref="GeneID:7283657"
/translation="MAEMQQPQISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHR
RIMFAQYELANNYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVD
GQGNFGSIDGDAPAAMRYTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSK
VPNLLLNGSSGIAVGMATNIPPHNLGELCDALQLLLDDPQCSIDDLMEHVKGPDFPTS
GYVYAGKGLYDAYHTGRGTVKVRGRMEIEDRKKSAQSIVIREIPYGLNKSSLVEKIAA
LVNDRKIDGITDLRDESDRRGIRVVIDLKRGTIPEIVINALYKFTPLESSFGINMLAV
VDNRPQLLNLKSALTCFVDHRREVVIRRTRYDLEKAEARAHILEGLRVAIDNIDEVVA
LIRASASPDEARAALMKRFELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEF
YRSILENTEVLRGELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLS
RRGYMKRTGLENYQQQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQL
KVHQVPEGSRTAKGVHINNLLPLEDGEWVTTVLALREFAEDKYFLFVTKRGMVKRSSA
SLYARCRKTGLMAVGLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPMGRVA
TGVKGIALRRQDFVVAGVIVKETDQTTEIMSISANGFGKRTSIELYRLQSRGGKGIIN
FKVTGKTGPVVGAMPVRDDDSLILLTSANKIVRIGLDEVRSKGRATMGVMLVRLDEGA
HVVGFDRVDEGGQTGRDLSEDMDEDAVPEGSAPAAQDAPSSAPADRGAGEGGTGEDA"
misc_feature 8008..10410
/locus_tag="Ddes_0006"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 8068..9402
/locus_tag="Ddes_0006"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(8068..8151,8164..8313,8317..8373,8377..8448,
8455..8457)
/locus_tag="Ddes_0006"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 8344..8346
/locus_tag="Ddes_0006"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(9139..9147,9154..9165,9196..9201,9241..9291)
/locus_tag="Ddes_0006"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 9502..9612
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 9640..9792
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 9808..9945
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 9955..10095
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10114..10257
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10264..10407
/locus_tag="Ddes_0006"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 10569..11483
/locus_tag="Ddes_0007"
/db_xref="GeneID:7283658"
CDS 10569..11483
/locus_tag="Ddes_0007"
/inference="similar to AA sequence:KEGG:Dvul_0003"
/note="KEGG: dvl:Dvul_0003 putative lipoprotein"
/codon_start=1
/transl_table=11
/product="putative lipoprotein"
/protein_id="YP_002478605.1"
/db_xref="GI:220903293"
/db_xref="GeneID:7283658"
/translation="MFFTAEKRGFRGALPPCPPEGRQRPSGGRGFFLFPLGGSVRGLA
LAVAFCFCLGLAGCDNPVLQGDDLSQAREAVAQRQWSLAERLLERYLREAQDSQNADD
RWEAWQQLLLVVNAAGQEPRASLEYLETMLEEYMDDDARSAVVLRRMAEVNESLHRHE
RAVDLWNAYIGLGGLGPEQILEGHRRLAAMQFSLRRFDAGEDTLQQCLGLPLPDHDKI
MCMYDLADQNMARERWQDVADLSQQILDSDPDQNLRGLAGYLLADALEQLGKGTEALK
QFELARDAYPNPSVIDNRIAHLRKKLKK"
gene 11489..12892
/locus_tag="Ddes_0008"
/db_xref="GeneID:7283659"
CDS 11489..12892
/locus_tag="Ddes_0008"
/inference="protein motif:TFAM:TIGR01134"
/note="TIGRFAM: amidophosphoribosyltransferase;
PFAM: glutamine amidotransferase class-II;
phosphoribosyltransferase;
KEGG: dvl:Dvul_2807 amidophosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="amidophosphoribosyltransferase"
/protein_id="YP_002478606.1"
/db_xref="GI:220903294"
/db_xref="InterPro:IPR000583"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR005854"
/db_xref="GeneID:7283659"
/translation="MIKHECGVFGIYDHDDAARLAYFGLYAQQHRGQESAGIVTFDGK
AVNEHRGMGLVPDVFSEADLQRLVGRHAVGHVRYSTTGSSSSGNAQPFLANYKGRAIA
LAHNGNLVNAAQLREDLENEGAIFSTSNDTEVFMHLLVRALRHNDLPGAVKEACYRVQ
GAYCLLVMADGVMVAVRDPHGFHPLAFGRMNGSPVFASETCAFDLLEAEFVRTVEPGE
VVVVEGNSVRSERLIGPMPEKPAQCIFELIYFARPDSYVFDEQVYQCRKKMGWNLAME
SAPDVDFVMPFPDSGIYPALGFAQRSGLHYEHAMIRNHYVGRTFIQPSQSMRSFGVRV
KINPVREMIEGKRICIIDDSIVRGTTMMTRVKKLRELGAKEVHIRISSPPVMSPCHYG
IDFSSRGELIAAQHSLEEIQRKLDVDSLHYLSIEGLMGSVSKPQHYCMACFTGEYPVP
CEECGDKFKLEGSCGSR"
misc_feature 11504..12832
/locus_tag="Ddes_0008"
/note="amidophosphoribosyltransferase; Region: purF;
TIGR01134"
/db_xref="CDD:162218"
misc_feature 11504..12262
/locus_tag="Ddes_0008"
/note="Glutamine amidotransferases class-II (GN-AT)_GPAT-
type. This domain is found at the N-terminus of glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase) . The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the...; Region:
GPATase_N; cd00715"
/db_xref="CDD:48479"
misc_feature order(11504..11506,11579..11584,11717..11719,11804..11809,
11879..11881)
/locus_tag="Ddes_0008"
/note="active site"
/db_xref="CDD:48479"
misc_feature order(11552..11557,11564..11566,11585..11587,11768..11770,
11885..11887,11894..11899,11906..11911)
/locus_tag="Ddes_0008"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48479"
misc_feature 12308..12673
/locus_tag="Ddes_0008"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(12350..12352,12356..12358,12542..12550,12554..12568,
12641..12643)
/locus_tag="Ddes_0008"
/note="active site"
/db_xref="CDD:206754"
gene 13137..14387
/gene="hisS"
/locus_tag="Ddes_0009"
/db_xref="GeneID:7283660"
CDS 13137..14387
/gene="hisS"
/locus_tag="Ddes_0009"
/EC_number="6.1.1.21"
/inference="protein motif:TFAM:TIGR00442"
/note="catalyzes a two-step reaction, first charging a
histidine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA
synthetase; forms homodimers; some organisms have a
paralogous gene, hisZ, that is similar to hisS and
produces a protein that performs the first step in
histidine biosynthesis along with HisG"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_002478607.1"
/db_xref="GI:220903295"
/db_xref="InterPro:IPR002314"
/db_xref="InterPro:IPR004154"
/db_xref="InterPro:IPR006195"
/db_xref="InterPro:IPR015807"
/db_xref="GeneID:7283660"
/translation="MSIARIKGFADMFPPDSDIFTRMENTARDIFGRYGFVELRTPIV
EFTELFQRSIGEETDVVQKEMYTFPDRKDRSLTLRPEATAGVMRAYIESGLANREAVS
RLFTTGPMFRYERPQKGRMRQFHQINCECLGSHSPYADADLISMLLRFLDALGLEDLT
LKVNSLGCSQCRPKFKDALLAYLETVDSAALCADCARRVHTNPLRVLDCKQPGCRAIT
DAAPKLLDYNCPECRAHFDTVLGLLNGEKLPFELDHRLVRGLDYYCRTTFEVVSGSIG
AQAAVAGGGRYDGLIRSLGGPDAPGVGFAAGMERLALMMGAGAAVPADFYLVGMDAQS
RAQGYALAQNLRAAGLRGEMNFSEAGFKSLMRQAGKSGARYCLIMGPDEAAQNTVVVK
NLESGEQTTVPQAQALHILQTGTN"
misc_feature 13137..14375
/gene="hisS"
/locus_tag="Ddes_0009"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:178812"
misc_feature 13182..14081
/gene="hisS"
/locus_tag="Ddes_0009"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(13197..13199,13233..13235,13248..13268,13338..13343,
13377..13379,13383..13385,13398..13403,13410..13415,
13500..13505,13524..13526,13548..13550,13560..13562,
13569..13571,13989..13991,14043..14048)
/gene="hisS"
/locus_tag="Ddes_0009"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 13242..13268
/gene="hisS"
/locus_tag="Ddes_0009"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(13377..13379,13383..13385,13470..13472,13476..13478,
13497..13499,13506..13508,13512..13514,13524..13526,
13908..13910,13914..13916,13920..13925,13974..13976,
13989..13991,14046..14048,14055..14057,14064..14066)
/gene="hisS"
/locus_tag="Ddes_0009"
/note="active site"
/db_xref="CDD:73226"
misc_feature 13467..13481
/gene="hisS"
/locus_tag="Ddes_0009"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(14043..14057,14064..14066)
/gene="hisS"
/locus_tag="Ddes_0009"
/note="motif 3; other site"
/db_xref="CDD:73226"
misc_feature 14100..14372
/gene="hisS"
/locus_tag="Ddes_0009"
/note="HisRS Histidyl-anticodon binding domain. HisRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
HisRS_anticodon; cd00859"
/db_xref="CDD:29799"
misc_feature order(14124..14129,14232..14234,14250..14252,14274..14276,
14304..14306,14310..14312)
/gene="hisS"
/locus_tag="Ddes_0009"
/note="anticodon binding site; other site"
/db_xref="CDD:29799"
gene 14407..16290
/gene="aspS"
/locus_tag="Ddes_0010"
/db_xref="GeneID:7283661"
CDS 14407..16290
/gene="aspS"
/locus_tag="Ddes_0010"
/inference="protein motif:TFAM:TIGR00459"
/note="catalyzes a two-step reaction, first charging an
aspartate molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; contains discriminating
and non-discriminating subtypes"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_002478608.1"
/db_xref="GI:220903296"
/db_xref="InterPro:IPR002312"
/db_xref="InterPro:IPR004115"
/db_xref="InterPro:IPR004364"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004524"
/db_xref="InterPro:IPR006195"
/db_xref="GeneID:7283661"
/translation="MAEQTAQAVAQGQDVQQEHQKYITGLGDWHRSQTCGELTLANNG
QEVCLMGWVQYRRDHGGLIFVDLRDRSGLTQVVFSPDAAPEAHKNAHILRSEYVLAIK
GLVRPRPEGMVNPNMVTGEIEVVVTEWKLLNTSKTPPFTIENRCDAGENLRLAWRYLD
LRRPRMQDNLRLRHKVAQCIRRHLDEDGFVEVETPVLTKSTPEGARDFLVPSRLNTGE
FYALPQSPQLFKQLLMVAGMDRYFQIVRCFRDEDLRADRQPEFTQVDIEMSFADEETV
MGMAEKLMARVFRDVMGKELSLPFPRMPWDEAMARYGVDKPDTRFGLELVDITEIVRG
SGFKLFATAPLVKGMRVPGGESMTRKEIDAFTEFVKIYGAQGLAWIKIKADEWQSPIA
KFLSDEERKGIAAALDLQVGDIVFFQAGEPGMVNAALGNLRVHLADHMNLIPENTFNF
LWVTDFPLYEYDEEEKRYVACHHPFTSPAPGHMELMTSDPARARARAYDMVLNGSEVG
GGSIRIHSGEVQRRMFEALGFTPEQAESQFGFLIQALEHGAPPHGGLAFGLDRLIMLL
AGASSIRDVIAFPKTQKATCLMTDAPSPVAAKQLRELGLRLREQPGEKGKTDKPGEAE
KAE"
misc_feature 14488..16200
/gene="aspS"
/locus_tag="Ddes_0010"
/note="aspartyl-tRNA synthetase; Validated; Region: aspS;
PRK00476"
/db_xref="CDD:179042"
misc_feature 14497..14904
/gene="aspS"
/locus_tag="Ddes_0010"
/note="EcAspRS_like_N: N-terminal, anticodon recognition
domain of the type found in Escherichia coli aspartyl-tRNA
synthetase (AspRS), the human mitochondrial (mt) AspRS-2,
the discriminating (D) Thermus thermophilus AspRS-1, and
the nondiscriminating (ND)...; Region: EcAspRS_like_N;
cd04317"
/db_xref="CDD:58587"
misc_feature order(14497..14499,14506..14508,14560..14562,14614..14616,
14803..14805,14809..14814)
/gene="aspS"
/locus_tag="Ddes_0010"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58587"
misc_feature order(14569..14571,14575..14583,14596..14598,14629..14631,
14686..14688,14728..14730,14746..14748,14773..14775,
14821..14823)
/gene="aspS"
/locus_tag="Ddes_0010"
/note="anticodon binding site; other site"
/db_xref="CDD:58587"
misc_feature 14914..>15345
/gene="aspS"
/locus_tag="Ddes_0010"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature order(14923..14931,14938..14940,14947..14952,14959..14961,
14968..14979,14983..15003,15022..15024,15031..15045,
15055..15066,15109..15114,15121..15126,15142..15144,
15154..15156,15184..15186,15214..15216,15229..15231)
/gene="aspS"
/locus_tag="Ddes_0010"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73228"
misc_feature 14989..15003
/gene="aspS"
/locus_tag="Ddes_0010"
/note="motif 1; other site"
/db_xref="CDD:73228"
misc_feature order(15013..15021,15079..15081,15085..15087,15094..15096,
15151..15153,15157..15159,15172..15180,15187..15189,
15193..15195)
/gene="aspS"
/locus_tag="Ddes_0010"
/note="active site"
/db_xref="CDD:73228"
misc_feature 15148..15159
/gene="aspS"
/locus_tag="Ddes_0010"
/note="motif 2; other site"
/db_xref="CDD:73228"
misc_feature 15442..15693
/gene="aspS"
/locus_tag="Ddes_0010"
/note="GAD domain; Region: GAD; pfam02938"
/db_xref="CDD:145868"
misc_feature <15748..16155
/gene="aspS"
/locus_tag="Ddes_0010"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature 16078..16089
/gene="aspS"
/locus_tag="Ddes_0010"
/note="motif 3; other site"
/db_xref="CDD:73228"
gene 16332..16850
/locus_tag="Ddes_0011"
/db_xref="GeneID:7283662"
CDS 16332..16850
/locus_tag="Ddes_0011"
/EC_number="3.5.1.88"
/inference="protein motif:TFAM:TIGR00079"
/note="KEGG: dvl:Dvul_0029 peptide deformylase;
TIGRFAM: peptide deformylase;
PFAM: formylmethionine deformylase"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_002478609.1"
/db_xref="GI:220903297"
/db_xref="InterPro:IPR000181"
/db_xref="GeneID:7283662"
/translation="MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGV
GLAAPQVGRNIRMLVMDPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRA
DVKRMSRVHLSATDLDGNAIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDS
KVKKWLKRKTAV"
misc_feature 16344..16769
/locus_tag="Ddes_0011"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature order(16458..16466,16479..16481,16605..16613,16737..16742,
16749..16751)
/locus_tag="Ddes_0011"
/note="active site"
/db_xref="CDD:29602"
misc_feature order(16464..16466,16479..16481,16611..16613,16740..16742)
/locus_tag="Ddes_0011"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature order(16608..16610,16737..16739,16749..16751)
/locus_tag="Ddes_0011"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 16823..17836
/locus_tag="Ddes_0012"
/db_xref="GeneID:7283663"
CDS 16823..17836
/locus_tag="Ddes_0012"
/EC_number="2.1.2.9"
/inference="protein motif:TFAM:TIGR00460"
/note="KEGG: dvu:DVU3365 methionyl-tRNA formyltransferase;
TIGRFAM: methionyl-tRNA formyltransferase;
PFAM: formyl transferase domain protein"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_002478610.1"
/db_xref="GI:220903298"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR005793"
/db_xref="InterPro:IPR005794"
/db_xref="GeneID:7283663"
/translation="MAQEKDCRIVFMGTPGFAAASLRRLAAWPRAHIVAVYTQPDRPA
GRGQKLAMSAVKKLALELGIPVCQPASLKGAEAQAELAAFRPDVLAVAAYGLILPDAV
LDMPRLAPVNVHASILPGLRGAAPIQRAVMEGWQPGARAGISIMRIGSRLDAGPVYAM
GDTPIGEHTSGSLHDALAELGAELLVTVLDDLMEGRAVAVEQDESLATHAAKLGKRDG
YINWTRSAAEAHAQIRGVTPRPGARTVLHLDAGTDFEARSMPLIVSPGTIGETAAGTA
PGSVRHDGQDISIACGDCWYTLGMVRPEGRKDMPVRDLLNGSLKNLPQGVCGEARSPE
ESL"
misc_feature 16844..17773
/locus_tag="Ddes_0012"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature 16844..17461
/locus_tag="Ddes_0012"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(16859..16861,16871..16876,17093..17116,17129..17131,
17156..17167,17189..17191,17258..17260,17264..17269,
17276..17281)
/locus_tag="Ddes_0012"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(16862..16867,16871..16873,16937..16939,16949..16951,
16955..16966,17096..17107,17156..17158,17162..17167,
17189..17197,17456..17458)
/locus_tag="Ddes_0012"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(17093..17095,17102..17104,17108..17116,17129..17131,
17156..17158,17264..17269,17276..17281)
/locus_tag="Ddes_0012"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(17156..17158,17162..17164,17279..17281)
/locus_tag="Ddes_0012"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 17471..17755
/locus_tag="Ddes_0012"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(17537..17539,17600..17602,17606..17608,17726..17728,
17732..17734,17738..17743,17747..17749)
/locus_tag="Ddes_0012"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 18207..19082
/locus_tag="Ddes_0013"
/db_xref="GeneID:7283664"
CDS 18207..19082
/locus_tag="Ddes_0013"
/inference="protein motif:PFAM:PF01976"
/note="PFAM: protein of unknown function DUF116;
KEGG: dvl:Dvul_0031 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478611.1"
/db_xref="GI:220903299"
/db_xref="InterPro:IPR002829"
/db_xref="GeneID:7283664"
/translation="MKLRKSPFSLPPEQYGGARKRIFIGLMLASCLVVCLGLAVFLIL
PWSDLLDGMVWLERLSITVGLVSIGGLMWLCLMLVFHIYTGKALPGARSVRHITIRLF
FPLMELLAKFVGIERGKVRRSFIKVNNELVLSCRRAVQPGELLLLLPHCVQRSSCPHR
LVHNADLCRRCGQCPVGDLLHLRDRYGIRLAIATGGTIARRIVVQTRPRCIIAVACER
DLTSGIQDSYPLPVFGVLNMRPNGPCLDTLVPLAALEDAVRLFLGLEHMAAHGQAGEK
CPSVDAVIPDGEGRA"
misc_feature 18510..18983
/locus_tag="Ddes_0013"
/note="Protein of unknown function DUF116; Region: DUF116;
pfam01976"
/db_xref="CDD:145254"
gene 19079..20659
/locus_tag="Ddes_0014"
/db_xref="GeneID:7283665"
CDS 19079..20659
/locus_tag="Ddes_0014"
/inference="protein motif:PFAM:PF01029"
/note="PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44;
KEGG: lip:LI0876 tRNA and rRNA cytosine-C5-methylases"
/codon_start=1
/transl_table=11
/product="NusB/RsmB/TIM44"
/protein_id="YP_002478612.1"
/db_xref="GI:220903300"
/db_xref="InterPro:IPR001678"
/db_xref="InterPro:IPR006027"
/db_xref="GeneID:7283665"
/translation="MSRNRNISLRKLSCNGRTAALRALLLVDDGLSAQQALASVLDAP
VAHGASGNSREKSHTANAGRCQGLSAQDRALCTELVYGCLRTELRLNFLLGRVLPRPQ
GLPRPMQILLALAVYGLLFQDKVPSHAVVYEAVEQARALFGQGLARVANGALRSLQRM
GEEPAQPSFYAGQSGVKKYRHGAGGTDSFLGKCIFYSIPLWIGELWRSAYGDEAALRL
MQRSFERPWAALRINARHTDGAALHAVLAAPQAEGRASAIAGLSGAATESGATEQDSL
QYHIDIADRVDKNENNEGQGNGHKPVAIGQWGLAFAPGTMPREALGLDLRQWLARGAL
SWQSAGSQQALLALGLDRWHEPVWDACAGHGGKSTALMEWGVPVSLCTDRSFARLRGL
PTQCTTLGLPVPPHCLADAIRPPVGQWPGHILVDAPCSGLGVLGRRPDIRRREPQHLA
ELEVLQQNMLRVLADILQPGRELAYITCTLNPAENERAVDQLLENNSDLTIERQWQTG
HSHPWLEGMFGAVLRKKG"
misc_feature 19127..19555
/locus_tag="Ddes_0014"
/note="NusB family; Region: NusB; pfam01029"
/db_xref="CDD:201560"
misc_feature 19172..19180
/locus_tag="Ddes_0014"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29564"
misc_feature <20141..20650
/locus_tag="Ddes_0014"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(21378..22292)
/locus_tag="Ddes_0015"
/db_xref="GeneID:7283666"
CDS complement(21378..22292)
/locus_tag="Ddes_0015"
/inference="protein motif:TFAM:TIGR00180"
/note="TIGRFAM: parB-like partition protein;
PFAM: ParB domain protein nuclease;
KEGG: dvu:DVU3360 ParB family protein"
/codon_start=1
/transl_table=11
/product="parB-like partition protein"
/protein_id="YP_002478613.1"
/db_xref="GI:220903301"
/db_xref="InterPro:IPR003115"
/db_xref="InterPro:IPR004437"
/db_xref="GeneID:7283666"
/translation="MSGNKKGLGRGLDALFGGSEPKREQEAASSSLPVSSLRPNPGQP
RRHFDEVALRELAASIKAQGIIQPLLVRPLAGGETYQIVAGERRWRAAQMAGLDNVPV
YIRELSDKEVMAAALIENLQREDLNPIEEAEALQALREALDLTQEELAARLGKSRPAV
ANALRLLQLSAAAREDLQTGRISAGHARCLLGIDEPAAAEALRLRIQSHGMTVREAED
AAAFWRGNSALPWLEEEKQDRKPAPQKISRKKSPAFKVLQKDLSSALGCAAKISGDEN
GGRISLNYANKQELDALLEKFGVALEGQ"
misc_feature complement(21930..22202)
/locus_tag="Ddes_0015"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
misc_feature complement(21510..22199)
/locus_tag="Ddes_0015"
/note="Stage 0 sporulation protein J (antagonist of Soj)
containing ParB-like nuclease domain [Transcription];
Region: Spo0J; COG1475"
/db_xref="CDD:31664"
gene 22528..22935
/locus_tag="Ddes_0016"
/db_xref="GeneID:7283667"
CDS 22528..22935
/locus_tag="Ddes_0016"
/inference="similar to AA sequence:KEGG:Dvul_0036"
/note="KEGG: dvl:Dvul_0036 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478614.1"
/db_xref="GI:220903302"
/db_xref="GeneID:7283667"
/translation="MFEHPELRYVTDAKGNVEAVQLSYKLWEQIEPKIRSHISCQPAD
KPLVQAEAPLKGFEQLLQYWDFKYPYTPDVACPHCGAKTDDWRTDPAQPFLLTNANIG
GLLVFLCKCCRTTIRKKHFHKHVAVEHTTPRAE"
gene complement(23050..23838)
/locus_tag="Ddes_0017"
/db_xref="GeneID:7283668"
CDS complement(23050..23838)
/locus_tag="Ddes_0017"
/inference="protein motif:PFAM:PF01656"
/note="PFAM: Cobyrinic acid ac-diamide synthase;
KEGG: dvl:Dvul_0037 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_002478615.1"
/db_xref="GI:220903303"
/db_xref="InterPro:IPR000392"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:7283668"
/translation="MARIISIANQKGGVGKTTTAINLSAALAVMEKKVLLVDCDPQAN
STSGLGLQQENLHGDLYNTFYEPEQVRQNIAKSRSPFLDILPASTNLVAVELELVDKM
AREFYLDECLKAVQKDYEYIILDCPPSLGLLTLNALCASRELLIPLQCEFFALEGIVK
LLQTYEQVKKRLNPELSLLGVVLTMYDTRNRLTREVKNEVRRCFPDHLFETVIPRNVR
LSEAPSHGKSIIHYDIKSKGADAYLGLSKEVVLRRPSKKSTVLQ"
misc_feature complement(23065..23838)
/locus_tag="Ddes_0017"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:31385"
misc_feature complement(<23713..23829)
/locus_tag="Ddes_0017"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature complement(23788..23808)
/locus_tag="Ddes_0017"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature complement(23788..23790)
/locus_tag="Ddes_0017"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature complement(23287..>23484)
/locus_tag="Ddes_0017"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature complement(23464..23466)
/locus_tag="Ddes_0017"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 24135..24542
/locus_tag="Ddes_0018"
/db_xref="GeneID:7283669"
CDS 24135..24542
/locus_tag="Ddes_0018"
/inference="protein motif:PFAM:PF00072"
/note="PFAM: response regulator receiver;
KEGG: dvl:Dvul_0150 response regulator receiver protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_002478616.1"
/db_xref="GI:220903304"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:7283669"
/translation="MGFKKILLVDDEEEVTRILAKRLGRRGYECATAANGQLALNAME
DTAYHVVIMDVKMPVMDGMSALQKIHRLWPCTQVILLSGHADMQLAVQAMSEGAFGYL
MKPVDLDELLFKIEDAATQCRLEAEQGGANNPS"
misc_feature 24150..24482
/locus_tag="Ddes_0018"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 24153..24491
/locus_tag="Ddes_0018"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(24162..24167,24294..24296,24318..24320,24378..24380,
24435..24437,24444..24449)
/locus_tag="Ddes_0018"
/note="active site"
/db_xref="CDD:29071"
misc_feature 24294..24296
/locus_tag="Ddes_0018"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(24303..24308,24312..24320)
/locus_tag="Ddes_0018"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 24444..24452
/locus_tag="Ddes_0018"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 24564..25394
/locus_tag="Ddes_0019"
/db_xref="GeneID:7283670"
CDS 24564..25394
/locus_tag="Ddes_0019"
/inference="protein motif:PFAM:PF01323"
/note="PFAM: DSBA oxidoreductase;
KEGG: dvl:Dvul_2927 DsbA oxidoreductase"
/codon_start=1
/transl_table=11
/product="DSBA oxidoreductase"
/protein_id="YP_002478617.1"
/db_xref="GI:220903305"
/db_xref="InterPro:IPR001853"
/db_xref="GeneID:7283670"
/translation="MTVFKKAGAVALLGLMTFGGWALLAQQGARAASVQVTEENLPQM
LEKLFQERPDLVMDVLRKHSEAVLDIAQQGSNLRRQRSLEAQWNQEMKTPKPVKVEGR
PVLGAKNAKVRIVAFSDFTCHFCQQAAGTVSGIMKEYGKDVSLVFKNLPLDEKGPASI
ASRYFLAVAQQSEEKAWKFHDALFADRNRLVTEGETFLKKTAQDLGVDMKRLAKDVHS
KKISDIMDEDQQDAQKLGVEGTPYFLVNDLVVRGALPPDLFKRAVDMAKNQADNKSAK
"
sig_peptide 24564..24641
/locus_tag="Ddes_0019"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.619 at
residue 26"
misc_feature 24879..25355
/locus_tag="Ddes_0019"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
misc_feature 24900..25355
/locus_tag="Ddes_0019"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
gene complement(26392..27039)
/locus_tag="Ddes_0020"
/db_xref="GeneID:7283671"
CDS complement(26392..27039)
/locus_tag="Ddes_0020"
/inference="similar to AA sequence:KEGG:Dvul_0201"
/note="KEGG: dvl:Dvul_0201 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478618.1"
/db_xref="GI:220903306"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:7283671"
/translation="MARKTAISESLLSIADISRHFSLPESTTRYYCKRFAAFIPSVGE
GRRRRYRPETLEVIAAILEQMQKSRTAAAVEDALLARFPRNAVALAGNAPLQAVQPPA
QDFFPSAALQLMERQTTALEGIAQLLHAVVERLPAQTGQTAPGASGQNADLRQELDTL
RLLLHSSEKTQQADLEQLRQWMGRIIRSKGAAENPADATEPSLKQGKAASGSGQS"
misc_feature complement(26806..27006)
/locus_tag="Ddes_0020"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(<26857..27006)
/locus_tag="Ddes_0020"
/note="Helix-Turn-Helix DNA binding domain of
transcription regulators from the MerR superfamily;
Region: HTH_MerR-SF; cl02600"
/db_xref="CDD:207663"
misc_feature complement(order(26896..26904,26953..26955,26995..27003))
/locus_tag="Ddes_0020"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133389"
gene complement(27922..28419)
/locus_tag="Ddes_0021"
/db_xref="GeneID:7283672"
CDS complement(27922..28419)
/locus_tag="Ddes_0021"
/inference="protein motif:PFAM:PF00877"
/note="PFAM: NLP/P60 protein;
KEGG: dvu:DVU3188 NLP/P60 family protein"
/codon_start=1
/transl_table=11
/product="NLP/P60 protein"
/protein_id="YP_002478619.1"
/db_xref="GI:220903307"
/db_xref="InterPro:IPR000064"
/db_xref="GeneID:7283672"
/translation="MKGMTDIHIFSKPWAALLMLAFFLLAGCGLQRPVDPGPAPESAH
KVVRTAYSQMGKKYRSGGASPQKGFDCSGLIWWVYKQNGYKVPRITVDQAKTGYAVPK
DQARPGDIVVFRTGSSPRGLHTGIYAGGDSFIHSPRRGEKVRMESITIPYWRSKLIAV
RRVVR"
sig_peptide complement(28324..28419)
/locus_tag="Ddes_0021"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.610) with cleavage site probability 0.383 at
residue 32"
misc_feature complement(27937..>28329)
/locus_tag="Ddes_0021"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(27934..28257)
/locus_tag="Ddes_0021"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(29190..32714)
/locus_tag="Ddes_0022"
/db_xref="GeneID:7283673"
CDS complement(29190..32714)
/locus_tag="Ddes_0022"
/inference="protein motif:PFAM:PF00580"
/note="PFAM: UvrD/REP helicase;
KEGG: dvl:Dvul_2483 UvrD/REP helicase"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_002478620.1"
/db_xref="GI:220903308"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:7283673"
/translation="MNFIADLHIHSRFSRATSKALNARHLAAWARCKGIGVLGTGDFT
HPQWRAELSEQLELDESSGLYRLKGEPEELDVMAGGHMGDGSAEKPLFMLQAEISSIY
KRHGKVRKVHNLIFVRTLEDAERLSLRLEQIGNLHSDGRPILGLDSRDLLEIMLECAE
DSVMIPAHIWTPWFALFGSKSGFDRLTDCYGDLSEHIFALETGLSSDPEMNRLVSQLD
GYALVSNSDAHSGANLGREANLFAGRPSYAGMFEALRTAARRQPQDALDCRFLGTMEF
YPDEGKYHLDGHRACNVVLEPRESRKLGNICPVCGKPLTVGVLHRVWELADREESPQL
PHEPEARPLIPLPEVVGEILGVGIASRRVQERYGSLLRELGPELDILCRMPEQEIRDH
WEPLGEAVARMRRGQVFRQGGYDGEYGVVRVFTPEELDDIRNTWRGAGRGALPGLAPV
KSRKAGPSAADAAKITGDSATGTAPAVKMRRTRAASVNMLDLMKERPAAASPSQAGQP
GHGTPASGGTGSFSEEQYQALVAGPGPVLVQAGPGAGKTRVLVGRIQHLLDQGTAPHK
LLAVTFTRRAANEMRQRLAAALPHMQDLPCCDTLHGLAWGRMRAVTQAQGQECLLLGE
DAALRFFMAANPQLQAREARELWRQLSLARETRHTLHAGHAALELAAARYTARKAEQP
DFRYVDYADLLDWWLDHLDDLPRDMLPQHVLVDEVQDLSPVQLDIIRGMLPPDGSGFF
GIGDPDQAIYGFRGVSGQSEASLRSIWPGLSVYCLGRSFRSSQAVLNMAHSLLLHKGQ
CGPLTAAQSLNAQLRLFSAPDQQAELRWISRRVQALLGATGHTLLDQQQNSAEAHELD
GTLAPGDIAVLVRLRAQIPPLKAALEQAGIPCSAPVEEAFWQDAACARLLALAAVYCG
FSGLAQVFDAATPQQSLQKDLDTATDNPFAAAGPLPPPGDLESWLAGQNWAGEVLLTG
RAWRELKRSWKEQESWQEFLHHLAWLQETEMVRNKAEHVQIMTMHASKGLEFQAVFLP
GLEDGLLPLRRDMLFGPATDTITGAARNTGNSNADTADAIAPTVADTARTDAGPAANE
YEAPEQEDEERRLLYVALTRAARALFVSHSARRTLYGKSLALPPSPFLEQIRHCCRQS
VLTPHRQTLVRSLSLLPPGPEEKPRGKS"
misc_feature complement(31422..32714)
/locus_tag="Ddes_0022"
/note="PHP family phosphoesterase with a Zn ribbon
[General function prediction only]; Region: COG1379"
/db_xref="CDD:31569"
misc_feature complement(29253..31148)
/locus_tag="Ddes_0022"
/note="Superfamily I DNA and RNA helicases [DNA
replication, recombination, and repair]; Region: UvrD;
COG0210"
/db_xref="CDD:30559"
misc_feature complement(30903..31136)
/locus_tag="Ddes_0022"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
gene complement(32728..33735)
/locus_tag="Ddes_0023"
/db_xref="GeneID:7283674"
CDS complement(32728..33735)
/locus_tag="Ddes_0023"
/inference="similar to AA sequence:KEGG:DVU0452"
/note="KEGG: dvu:DVU0452 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478621.1"
/db_xref="GI:220903309"
/db_xref="GeneID:7283674"
/translation="MTQYAAPHDVMSARARFPAGLEQPEGSLRFGADALLLAAFVTRH
LEAKKHRYAAGGSLARSPGLTPVPVAELGSGCGAALLALALRCPQVAGLGLEREEPLV
QAARRNARLLGLSGHVGLPDVSDLPDMTASLDGLDGVTAPSGQARFAMLDIADRSALA
ALAVPALPHTQASPAGARRLAGNQHIVMANPPYDTGGRPSPRAMRERALRGNGNTAGG
ENVLDTFCRAAAMLLRHQGYFFCIHDARALPQLCAAMQAARFGIRRILPVHARAGGPA
LRILVESRKNAAHDTVLEAPLCLHGDSPDAKPLWTAEALRFCPWLSRNDAGDSALFTA
S"
misc_feature complement(32785..33675)
/locus_tag="Ddes_0023"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:33880"
gene complement(33825..36089)
/locus_tag="Ddes_0024"
/db_xref="GeneID:7283675"
CDS complement(33825..36089)
/locus_tag="Ddes_0024"
/inference="protein motif:PFAM:PF01136"
/note="PFAM: peptidase U32;
KEGG: dvl:Dvul_0074 peptidase U32"
/codon_start=1
/transl_table=11
/product="peptidase U32"
/protein_id="YP_002478622.1"
/db_xref="GI:220903310"
/db_xref="InterPro:IPR001539"
/db_xref="GeneID:7283675"
/translation="MSDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAI
YLGLKHFSARMQAENFGLTELSRLTDLAHAENARVYVAMNTLIKPDEPAAAYRLTKRL
ATQVRPDGLIVQDLAILDLARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPR
ELSIDEIRLMGEACPEGLDLECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRR
VYRQGGPAALALVRNAEREEMDRARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDR
NEAAALAHGRGRSGRQGSMRGPGRKEHSGRWFSCLDLSLDVLAKTLLDIPHLVSWKIE
GRKKGPHYVYHVVTAYRMLRDNPGDPKARKTAEEILQMALGRPATRARFLPQKDNTVP
TTPDGQTSSGLLAGKLRIEQDGSVVLKPHLELLPQDYLRVGVEDERWHATLPVTRRIP
KGGSLIMRLPKHKTPKAGTSVFLIDRREPELMRILKSWQARLDQFPGRQSKAVESSPR
MPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQLQALWLSPRSADISRTVVQRICWWLPP
VVWPGEEETLRRSVARLWRDGARHFVCNEPWQRGLFPDSLDENADLLVGPFCNAANAP
ALGILAGMGFTGAFVSPELPREEMLALPRQSPLPLGAVLSGFWPVGLSRFGLLGVKTN
EPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMAAAGYGFFAHMQENPPASLPD
MRRESLFNWDGSLL"
misc_feature complement(<35430..36041)
/locus_tag="Ddes_0024"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:31168"
misc_feature complement(<35427..35813)
/locus_tag="Ddes_0024"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
misc_feature complement(34926..>35189)
/locus_tag="Ddes_0024"
/note="Peptidase family U32; Region: Peptidase_U32;
cl03113"
/db_xref="CDD:207842"
gene complement(36086..37102)
/locus_tag="Ddes_0025"
/db_xref="GeneID:7283676"
CDS complement(36086..37102)
/locus_tag="Ddes_0025"
/inference="protein motif:PFAM:PF01370"
/note="PFAM: NAD-dependent epimerase/dehydratase;
short-chain dehydrogenase/reductase SDR; 3-beta
hydroxysteroid dehydrogenase/isomerase;
dTDP-4-dehydrorhamnose reductase; Male sterility domain;
KEGG: dvl:Dvul_0038 NAD-dependent epimerase/dehydratase"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_002478623.1"
/db_xref="GI:220903311"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002198"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR005913"
/db_xref="InterPro:IPR008089"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:7283676"
/translation="MHVLVTGAAGFIGYHLAARLLADGHSVVGIDNCNDYYDVQLKKD
RLAQLAALPQASCFRFEPLDLADGPGMSALFAREGFSHVVNLAAQAGVRYSLVNPESY
LSSNLTGFGHVLEGCRHNKVGHLLFASSSSVYGLNAAQPYSVRHNVDHPVSLYAATKK
SNELMAHSYSHLYGIPCTGLRFFTVYGPWGRPDMALHLFTTAIVRGEPIKVFNEGRMR
RDFTYIDDIVEGIVRLLPLAPGPDPAFDPAAPDPASSSAPWRIYNIGNNNTVELNDFI
ATLEDALGMKARKDMLPMQPGDVKATWADINDLTALTGFAPSTPLREGIARFVEWYKE
YYKI"
misc_feature complement(36089..37102)
/locus_tag="Ddes_0025"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature complement(36098..37102)
/locus_tag="Ddes_0025"
/note="UDP glucuronic acid epimerase, extended (e) SDRs;
Region: UDP_GE_SDE_e; cd05253"
/db_xref="CDD:187563"
misc_feature complement(order(36548..36559,36626..36628,36638..36640,
36713..36721,36788..36790,36839..36847,37004..37012,
37067..37078,37082..37084))
/locus_tag="Ddes_0025"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187563"
misc_feature complement(order(36626..36628,36638..36640,36713..36715,
36785..36787))
/locus_tag="Ddes_0025"
/note="active site"
/db_xref="CDD:187563"
misc_feature complement(order(36446..36448,36470..36472,36506..36508,
36551..36553,36638..36640,36713..36715))
/locus_tag="Ddes_0025"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187563"
gene 37280..38386
/locus_tag="Ddes_0026"
/db_xref="GeneID:7283677"
CDS 37280..38386
/locus_tag="Ddes_0026"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_1966 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478624.1"
/db_xref="GI:220903312"
/db_xref="GeneID:7283677"
/translation="MHISDKKERRAPAGSADGAGAERPADDRKPAGKPGEGASSARAG
KSSAGRPASVAAQPWYAGQHKDALLYLMIAIFFVELAVGGVAFFYGVMHAAPEVPGGP
PMARFPWLGWVLAAILAPVGLILIVHLAGTWVSRFLGREAGDVAASGGGGHAADADQV
PERLQRFYAIIRNAPTVVVLLGILLLGAALFFVDGAFTALVALGSSLVPYIPWIAGSV
AAMIAVCYLVHRLFIYRHHRMQQEFAYRREVLERTGIVLVDKNCIPLPQTEEQRLALG
EARIVDARAALPPADGAPPTENRETREAGKHEEYGQKGRNASGSEGFSSAGNAEDEIT
DAEIISPEISAEISAEVPADTGDNEAKSRSAGKV"
misc_feature <37484..37663
/locus_tag="Ddes_0026"
/note="Integral membrane protein TerC family; Region:
TerC; cl10468"
/db_xref="CDD:200777"
gene complement(38411..39103)
/locus_tag="Ddes_0027"
/db_xref="GeneID:7283678"
CDS complement(38411..39103)
/locus_tag="Ddes_0027"
/inference="protein motif:PFAM:PF02570"
/note="PFAM: Precorrin-8X methylmutase CbiC/CobH;
KEGG: dvl:Dvul_0292 precorrin-8X methylmutase CbiC/CobH"
/codon_start=1
/transl_table=11
/product="precorrin-8X methylmutase CbiC/CobH"
/protein_id="YP_002478625.1"
/db_xref="GI:220903313"
/db_xref="InterPro:IPR003722"
/db_xref="GeneID:7283678"
/translation="MTYIPAPEHSVELDPACTPQTIEERSFAIIDEEMPPPRPFEGLL
WQVARRCVHTLGDTEIVHDLCLSQTALEAGVNALLAGCTVYTDTRMAAAGLPLRRLTP
LGVTVTPIMALPGLDALARAKKTTRSRAGLESLAAQMQGHIMVIGNAPTALLGLLDVL
EQGAPPPALIVGMPVGFVNAAQSKELLRRTAWPHFTLLGRKGGSAVAAACVNALADIA
LARRGLTQAAAL"
misc_feature complement(38492..39049)
/locus_tag="Ddes_0027"
/note="Precorrin isomerase [Coenzyme metabolism]; Region:
CobH; COG2082"
/db_xref="CDD:32265"
misc_feature complement(38492..39040)
/locus_tag="Ddes_0027"
/note="Precorrin-8X methylmutase; Region: CbiC; pfam02570"
/db_xref="CDD:202290"
gene complement(39141..40895)
/locus_tag="Ddes_0028"
/db_xref="GeneID:7283679"
CDS complement(39141..40895)
/locus_tag="Ddes_0028"
/inference="protein motif:PFAM:PF07685"
/note="PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ
domain protein glutamine amidotransferase;
KEGG: dvl:Dvul_0293 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="CobB/CobQ domain-containing protein glutamine
amidotransferase"
/protein_id="YP_002478626.1"
/db_xref="GI:220903314"
/db_xref="InterPro:IPR002586"
/db_xref="InterPro:IPR011698"
/db_xref="GeneID:7283679"
/translation="MHTEQPRIPGIIIAGTGSNTGKTTATLALLCALAARGIPVRAAK
TGPDYIDAAFHAAITGLPAANLDTWMCRETLPKAGESPLTSRKRLPRGLRSVFARMAG
PENSQKHSFGTPAPALLVVEGAMGLYDGGHGGAGSTAQLAALLDLPILLICSAAGLGQ
SVAPLVEGYVRHKPHWLSVHGPTPRFLGVICTHVGSPRHAEIIEDALKPLQKTDGLPL
LGLLPRAGAPALKSRHLGLVEAREALSALDRPALAHWFEENCRLDALLRLVGTADSLH
NTPDAAAFFMANAEKGSPATEETAWAARFFMPRPPGGRHVLQNAVDGAGMGQHDAPAA
PQKTSTPKRTRRPRVGMAWDAAFSFCYADLPPLLAELGAELVFFSPLRDAAPPPGCSA
LYFPGGYPELHAPQLSTNVRMLDALRALARNGLPIYGECGGYIYLMHSLRLKTHDGAD
RATEHPMAGLLPIHCTLGQERAALGYRAALALPGWPQDRPQDRAQTGAGAECSRPAPI
WVRGHEFHYAREDDSPLPAHCAPLWNLYDSKGIFLRQEGCRHGSVAGTWLHCYPEGSR
RFWRTWLEAAVKNNGRTM"
misc_feature complement(39162..40880)
/locus_tag="Ddes_0028"
/note="cobyrinic acid a,c-diamide synthase; Validated;
Region: PRK01077"
/db_xref="CDD:179218"
misc_feature complement(39177..39851)
/locus_tag="Ddes_0028"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyrinic Acid a,c-Diamide Synthase; Region:
GATase1_CobB; cd03130"
/db_xref="CDD:153224"
misc_feature complement(order(39207..39209,39213..39215,39603..39605))
/locus_tag="Ddes_0028"
/note="catalytic triad [active]"
/db_xref="CDD:153224"
gene complement(41207..41443)
/locus_tag="Ddes_0029"
/db_xref="GeneID:7283680"
CDS complement(41207..41443)
/locus_tag="Ddes_0029"
/inference="similar to AA sequence:KEGG:Dvul_0294"
/note="KEGG: dvl:Dvul_0294 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478627.1"
/db_xref="GI:220903315"
/db_xref="GeneID:7283680"
/translation="MKYLIVEDFSGQPVPFVFPRRVDHSDMREQLPYGQVLSAGFLEL
GPQGFICSGGHAELGLKARPREDAAIIAEALRQR"
gene complement(41453..42502)
/locus_tag="Ddes_0030"
/db_xref="GeneID:7283681"
CDS complement(41453..42502)
/locus_tag="Ddes_0030"
/inference="protein motif:PFAM:PF02618"
/note="PFAM: aminodeoxychorismate lyase;
KEGG: dvl:Dvul_0308 aminodeoxychorismate lyase"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase"
/protein_id="YP_002478628.1"
/db_xref="GI:220903316"
/db_xref="InterPro:IPR003770"
/db_xref="GeneID:7283681"
/translation="MKTLLRLLGLLLLLALAGGGWLAYEAHTFLNTPAQSEGQDVFFD
VPPGARFAQVAAGLEQKGIITDARRFALLARYKEWDSRLQAGRFALNSGWLPEKVLDT
LVNGQPVLFRITVPEGLTWWQTGKLLEEAGLVRFDDFRQVVTDPAFLRHYGIPFATAE
GFLMPDTYLLKKADEPDMAQARSVAGRMVDNFWRKAAPVWPDGRKPAVDQLKTWMILA
SVVEKETGIDAERPRVAGVYQNRLARNMILQADPTVIYGLGPGFDGNLRRNHLDDPNN
LYNTYQRPGLPPGPICSFGMAALKAAINPEKHDFLYFVAVTDGGEHAFSTNLADHNKA
VRQYLQNRRKAQQSR"
sig_peptide complement(42422..42502)
/locus_tag="Ddes_0030"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.325 at
residue 27"
misc_feature complement(41489..42382)
/locus_tag="Ddes_0030"
/note="YceG-like family; Region: YceG; pfam02618"
/db_xref="CDD:202312"
misc_feature complement(41498..42256)
/locus_tag="Ddes_0030"
/note="proteins similar to Escherichia coli yceG; Region:
yceG_like; cd08010"
/db_xref="CDD:153433"
misc_feature complement(order(41498..41500,41507..41512,41519..41521,
41540..41545,41690..41692,41699..41701,41750..41752,
41756..41758,42161..42163,42170..42175,42194..42196,
42206..42208,42233..42250,42254..42256))
/locus_tag="Ddes_0030"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153433"
gene complement(42499..42921)
/locus_tag="Ddes_0031"
/db_xref="GeneID:7283682"
CDS complement(42499..42921)
/locus_tag="Ddes_0031"
/inference="protein motif:PFAM:PF03652"
/note="PFAM: Holliday junction resolvase YqgF;
SMART: Resolvase RNase H domain protein fold;
KEGG: dvl:Dvul_0307 Holliday junction resolvase YqgF"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase YqgF"
/protein_id="YP_002478629.1"
/db_xref="GI:220903317"
/db_xref="InterPro:IPR005227"
/db_xref="InterPro:IPR006641"
/db_xref="GeneID:7283682"
/translation="MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEK
IIEAGAEAVVVGLPLTQDGKESLTTRQVRNVTQRLKRRIPLPFYYMVEELSSEEAWAD
LREAGLKMRKRKAVLDQQAAVRILSSFLALAPQERSPA"
misc_feature complement(42532..42918)
/locus_tag="Ddes_0031"
/note="Uncharacterized protein family (UPF0081); Region:
UPF0081; pfam03652"
/db_xref="CDD:202719"
gene complement(42937..43926)
/locus_tag="Ddes_0032"
/db_xref="GeneID:7283683"
CDS complement(42937..43926)
/locus_tag="Ddes_0032"
/inference="protein motif:TFAM:TIGR00233"
/note="catalyzes a two-step reaction, first charging a
tryptophan molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_002478630.1"
/db_xref="GI:220903318"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002306"
/db_xref="GeneID:7283683"
/translation="MSKELRTVSGMRPTGPLHLGHYFGVLKNWVELQHTEEAYFFVAD
WHALTSDYADPSKVGQNIREMVKDWVGAGLNPEDCVIFRQSAVKEHAELSLLLSMITP
VSWLERNPTYKEQQQQISNKDLGNAGFLCYPVLMAADILMYRPHGVPVGEDQLPHMEL
TREIARRFNYLYGGDLLPEPKAMLTPAAKCPGLDGRKMSKSYNNGIFLSDNMADIQEK
VRGMFTDKARLRKSDPGNPDVCNLFPYHVLLSSAEEQAEIRQGCTGATLGCVDCKKIF
LRNLEAFLTPLQERRAVLDANPARVDEILAHGNERARAFACQTMSLVREKMGV"
misc_feature complement(43078..43911)
/locus_tag="Ddes_0032"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature complement(order(43327..43329,43333..43338,43360..43362,
43456..43458,43465..43470,43474..43479,43483..43485,
43510..43512,43519..43521,43531..43533,43675..43677,
43789..43791,43804..43806,43855..43857,43864..43869,
43873..43875,43891..43905))
/locus_tag="Ddes_0032"
/note="active site"
/db_xref="CDD:173903"
misc_feature complement(42940..43902)
/locus_tag="Ddes_0032"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature complement(43864..43875)
/locus_tag="Ddes_0032"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature complement(order(43522..43527,43534..43539,43543..43545,
43606..43611,43615..43626,43630..43635,43642..43650,
43654..43659,43780..43785,43792..43794))
/locus_tag="Ddes_0032"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature complement(43324..43338)
/locus_tag="Ddes_0032"
/note="KMSKS motif; other site"
/db_xref="CDD:173903"
gene complement(43946..44620)
/locus_tag="Ddes_0033"
/db_xref="GeneID:7283684"
CDS complement(43946..44620)
/locus_tag="Ddes_0033"
/inference="protein motif:PFAM:PF02163"
/note="PFAM: peptidase M50;
KEGG: lip:LI0021 Zn-dependent proteases"
/codon_start=1
/transl_table=11
/product="peptidase M50"
/protein_id="YP_002478631.1"
/db_xref="GI:220903319"
/db_xref="InterPro:IPR008915"
/db_xref="GeneID:7283684"
/translation="MFNIDISQALNTLSIAAVPALLGIILHEVAHGWVAARCGDPTAR
MMGRLTLNPLPHIDPMGLMVFGLTSLSGSFVFGWAKPVPVNPRYFRDPAKGMMLVALA
GPLTNFILAGIFGVLLRLTLNFFPPIEWQYSNVYIFALKSMQAGVIINFGLGWLNLLP
IPPLDGSKVVAYFLPFNAALRYLSVERFGFIILLGLLFTGLLGMVLGPLVSGSARGLL
SLLGIL"
misc_feature complement(44060..44584)
/locus_tag="Ddes_0033"
/note="Uncharacterized homologs of Site-2 protease (S2P),
zinc metalloproteases (MEROPS family M50) which cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of the...; Region:
S2P-M50_like_1; cd06158"
/db_xref="CDD:100079"
misc_feature complement(order(44126..44128,44150..44152,44528..44530,
44537..44542))
/locus_tag="Ddes_0033"
/note="active site"
/db_xref="CDD:100079"
misc_feature complement(44141..44152)
/locus_tag="Ddes_0033"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100079"
gene complement(44686..44991)
/locus_tag="Ddes_0034"
/db_xref="GeneID:7283685"
CDS complement(44686..44991)
/locus_tag="Ddes_0034"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvu:DVU0136 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478632.1"
/db_xref="GI:220903320"
/db_xref="GeneID:7283685"
/translation="MTEASAKPQDEGRRYERAPVEIPAHCQVVKPEHTGARIVVLLQP
EEKHLSLPRPKTSRQLLAALGLAEETALVARDGQLLTPDRRIWPGDQVLVRKVASSG"
gene complement(45015..45479)
/locus_tag="Ddes_0035"
/db_xref="GeneID:7283686"
CDS complement(45015..45479)
/locus_tag="Ddes_0035"
/inference="protein motif:TFAM:TIGR01909"
/note="TIGRFAM: C_GCAxxG_C_C family protein;
KEGG: mla:Mlab_0460 hypothetical protein"
/codon_start=1
/transl_table=11
/product="C_GCAxxG_C_C family protein"
/protein_id="YP_002478633.1"
/db_xref="GI:220903321"
/db_xref="InterPro:IPR010181"
/db_xref="GeneID:7283686"
/translation="MGILMEQHAHERMELAEAQENFGMGIICAQQVFAHFSGRFGLQP
EEAMRTAACFGSGMGQAATCGCVTGALMVLGLAHGCAGPCSRERKRNLYSRRDAFITA
FAGSHGGLLCREILGYDLTIPEERTLIMEKDLFTTVCAPLVCAACGLLEEYL"
misc_feature complement(45018..45398)
/locus_tag="Ddes_0035"
/note="Putative redox-active protein (C_GCAxxG_C_C);
Region: C_GCAxxG_C_C; pfam09719"
/db_xref="CDD:192344"
gene complement(45506..46495)
/locus_tag="Ddes_0036"
/db_xref="GeneID:7283687"
CDS complement(45506..46495)
/locus_tag="Ddes_0036"
/inference="protein motif:PFAM:PF07670"
/note="PFAM: nucleoside recognition domain protein;
KEGG: dvl:Dvul_2272 hypothetical protein"
/codon_start=1
/transl_table=11
/product="nucleoside recognition domain-containing
protein"
/protein_id="YP_002478634.1"
/db_xref="GI:220903322"
/db_xref="InterPro:IPR011642"
/db_xref="GeneID:7283687"
/translation="MPVSPSAAENAFSLAALWHALGWPLLRLLLGMAAGLLIANVLEA
LRWTRHLARLAAPLARLAHLREVAGAGFSLAFVSPAAANGLLSDSHNMGELSDRELML
ANLFNSLPAYMVHTPTIFLLTWPVLGTPAIIYVGLTLLAAVGRTAFTVVLARRLLPPP
PPGCAACKADNNEKTDWAAAMHKAWKRFTRRLPKLVYFTAPIYVLMYLLQQFGYFALA
EQWLSQHMAWLSFLKPQAMGIIVLHLAAELGAALGAAGSVLQTGGLSARDVVLALMVG
NILSTPMRAIRHQLPSYSGFFRPALALRLILANQGLRAASMAAVTALYYYAGA"
misc_feature complement(45527..46384)
/locus_tag="Ddes_0036"
/note="Uncharacterized protein conserved in archaea
[Function unknown]; Region: COG3366"
/db_xref="CDD:33173"
gene complement(46566..47036)
/locus_tag="Ddes_0037"
/db_xref="GeneID:7283688"
CDS complement(46566..47036)
/locus_tag="Ddes_0037"
/EC_number="3.1.26.4"
/inference="protein motif:PRIAM:3.1.26.4"
/note="PFAM: ribonuclease H;
KEGG: dvl:Dvul_2274 ribonuclease H"
/codon_start=1
/transl_table=11
/product="Ribonuclease H"
/protein_id="YP_002478635.1"
/db_xref="GI:220903323"
/db_xref="InterPro:IPR002156"
/db_xref="GeneID:7283688"
/translation="MQNVTIHTDGSCLGNPGPGGWAAILRLDEGDHRKEFSGGYALTT
NNRMEMLAVIEALALLKSPCTVDLYTDSRYVCDSVSKGWLWGWVKKNWIKSDKKPVLN
VDLWQRMLPLLRQHKVNFHWLKGHAGHPENERCDVLARAQASRRDLPPDTGYKP"
misc_feature complement(46608..47027)
/locus_tag="Ddes_0037"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature complement(order(46617..46619,46671..46673,46824..46826,
46890..46892,46899..46907,47001..47012))
/locus_tag="Ddes_0037"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature complement(order(46629..46631,46824..46826,46890..46892,
47010..47012))
/locus_tag="Ddes_0037"
/note="active site"
/db_xref="CDD:187702"
gene complement(47279..49024)
/locus_tag="Ddes_0038"
/db_xref="GeneID:7283689"
CDS complement(47279..49024)
/locus_tag="Ddes_0038"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: chemotaxis sensory transducer;
KEGG: dvu:DVU1975 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478636.1"
/db_xref="GI:220903324"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:7283689"
/translation="MKLGVKLSLMSAFLLLLTAILGTFSLMQMSKINDGSTELSYEWL
PSTRCAMDFNIIASDYRLAEALFITTPPTDEYRQVYKTRMESTQKSLSAVAARYMPLI
GSAQERQAYETFARQWKEYSDLSGRIMQLADSGNLDQALQLFRVQSRTLYEQGRESLA
TLVRINTEGGNAASKECDDLYATSKKLIIILLAAALIAGTLTVVFIIRSTHKQLGKDP
GELNSIADRVVQGDYNVDDGNAKEGVYKAIVAMVSALKSNIERAQEESIRAQDAAEKA
GIAQHAAEEAQARAENARREGLLDAAAQLEGVVNIIASASEELSAQIEQSSHGAAQQA
GRIADTATAVEEMNVTVLEVARNASSGADLSGATQQKAREGEQITSQCQTAISDVQND
TMALKAGMDELSGHAQAINEIMTVISDIADQTNLLALNAAIEAARAGDAGRGFAVVAD
EVRKLAEKTMASTQDVGRAIRAIQESSRDGVHRMDAAVDKVNLATEFSLRSGDALKEI
LGLAEQTADQVRSIATASEQQSASSEEIARSVEHVNTIAGETAQAMGEASKAVSDLAA
QAQELARIIESLKRA"
sig_peptide complement(48932..49024)
/locus_tag="Ddes_0038"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.709 at
residue 31"
misc_feature complement(48482..48946)
/locus_tag="Ddes_0038"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature complement(47288..48073)
/locus_tag="Ddes_0038"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(47330..47992)
/locus_tag="Ddes_0038"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(47333..47338,47345..47347,47354..47359,
47366..47368,47375..47380,47384..47389,47396..47401,
47405..47407,47471..47473,47480..47482,47489..47494,
47501..47503,47510..47515,47522..47527,47531..47536,
47543..47545,47552..47557,47564..47566,47573..47578,
47615..47620,47627..47632,47636..47641,47648..47653,
47660..47662,47669..47674,47681..47683,47690..47692,
47702..47704,47723..47725,47732..47734,47744..47746,
47753..47758,47765..47767,47774..47776,47783..47788,
47795..47800,47807..47809,47816..47821,47825..47827,
47837..47842,47846..47851,47858..47860,47867..47872,
47879..47884,47891..47893,47900..47905,47912..47914,
47921..47926,47930..47935,47942..47944,47951..47956,
47963..47968))
/locus_tag="Ddes_0038"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(47657..47758)
/locus_tag="Ddes_0038"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(49852..51273)
/locus_tag="Ddes_0039"
/db_xref="GeneID:7283690"
CDS complement(49852..51273)
/locus_tag="Ddes_0039"
/EC_number="3.3.1.1"
/inference="protein motif:TFAM:TIGR00936"
/note="catalyzes the formation of L-homocysteine from
S-adenosyl-L-homocysteine"
/codon_start=1
/transl_table=11
/product="S-adenosyl-L-homocysteine hydrolase"
/protein_id="YP_002478637.1"
/db_xref="GI:220903325"
/db_xref="InterPro:IPR000043"
/db_xref="InterPro:IPR015878"
/db_xref="GeneID:7283690"
/translation="MTKALDLSLAHKVADMALADFGKKEMQLSEREVPGLMECIKKYG
SSQPLKGLKITGSLHMTIQTAMLIQTLHALGADLRWASCNIFSTQDHAAAAIADLGMA
KVFAWKGETLEDYWWCTEMALTWPDGSGPDLIVDDGGDATLLIHKGVEAENNPAILDE
KTDNKELQCILDRLKLRLKEDPQHWHKVAAGMKGVSEETTTGVHRLYQLEAAGKLLFP
AINVNDAVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVIGYGDVGKGCAQSMRG
LGARVLVTEIDPICALQAAMEGYEVTTVEDALPYGDIYVTCTGNYHVISGKHMEGMKD
EAIVCNIGHFDNEIEMTYLENTPGITCLNIKPQVDKWTLKSGRSIIVLAEGRLVNLGC
ATGHASFVMSNSFTNQTLAQIKLATEKLENKVYTLPKELDEEVARLHLGRLGAKLTKL
SREQADYIGVNVDGPYKSDHYRY"
misc_feature complement(49855..51240)
/locus_tag="Ddes_0039"
/note="Adenosylhomocysteinase; Provisional; Region:
PTZ00075"
/db_xref="CDD:185430"
misc_feature complement(49879..51228)
/locus_tag="Ddes_0039"
/note="S-adenosyl-L-homocysteine hydrolase (AdoHycase)
catalyzes the hydrolysis of S-adenosyl-L-homocysteine
(AdoHyc) to form adenosine (Ado) and homocysteine (Hcy).
The equilibrium lies far on the side of AdoHyc synthesis,
but in nature the removal of Ado and...; Region:
AdoHcyase; cd00401"
/db_xref="CDD:29522"
misc_feature complement(order(49900..49905,49912..49917,49924..49926,
49930..49938,49942..49947,49954..49956,49996..49998,
50074..50076,50092..50094,50185..50187,50236..50238,
50269..50277,50308..50319,50368..50373,50380..50391,
50395..50421,50440..50445,50506..50520,50524..50526,
50533..50538,50557..50562,50569..50571,50581..50583,
50596..50598,50602..50604,50650..50655,50662..50664,
51178..51183,51202..51204))
/locus_tag="Ddes_0039"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature complement(order(50086..50088,50578..50580,50590..50592,
50677..50682,50863..50865,51085..51087,51091..51093,
51097..51099))
/locus_tag="Ddes_0039"
/note="active site"
/db_xref="CDD:29522"
misc_feature complement(order(50086..50088,50107..50109,50113..50115,
50245..50253,50305..50307,50320..50325,50416..50424,
50476..50484,50488..50490,50575..50577,50671..50679))
/locus_tag="Ddes_0039"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene complement(51376..52299)
/locus_tag="Ddes_0040"
/db_xref="GeneID:7283691"
CDS complement(51376..52299)
/locus_tag="Ddes_0040"
/inference="protein motif:PFAM:PF08241"
/note="PFAM: regulatory protein ArsR; UbiE/COQ5
methyltransferase; Methyltransferase type 11;
Methyltransferase type 12;
KEGG: dvl:Dvul_2348 methyltransferase type 11"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_002478638.1"
/db_xref="GI:220903326"
/db_xref="InterPro:IPR001845"
/db_xref="InterPro:IPR004033"
/db_xref="InterPro:IPR013216"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:7283691"
/translation="MALLYFKALSDETRLRLVHILLHYELSVNELVRILDMGQSRVSR
HLKILTEAGLLTSRRDGLWVFYAVPRSGEEREFLRAAMPFVQADAAMRADLNMAAQML
EERALKTRQFFNAIAEDWDELNREVLGTFDLPDAVCAAIPENCGMAVDLGCGTGAVLA
RMLPLARGVIGVDGSARMLEICRRRFTPEDLSADRVSLRIGELSHLPLRDHEADFACI
NLVLHHLSEPIEGLREIHRIMAPGGRLFVADFLRHTDETMRNRYGDRWLGFEEGGLAA
DLDAVGFRTVSCAKQPVDRGLTLFLLTAEAR"
misc_feature complement(52054..52284)
/locus_tag="Ddes_0040"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(52054..52062,52066..52074,52078..52083,
52141..52143,52231..52233,52240..52245,52252..52257,
52264..52266,52273..52275,52279..52284))
/locus_tag="Ddes_0040"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(order(52102..52110,52123..52131,52147..52152,
52156..52161,52168..52173,52177..52188,52213..52221,
52258..52266,52276..52281))
/locus_tag="Ddes_0040"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(order(52081..52083,52210..52212,52219..52221))
/locus_tag="Ddes_0040"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(51547..51855)
/locus_tag="Ddes_0040"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(51643..51645,51691..51699,51778..51783,
51829..51849))
/locus_tag="Ddes_0040"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 52442..52972
/locus_tag="Ddes_0041"
/db_xref="GeneID:7283692"
CDS 52442..52972
/locus_tag="Ddes_0041"
/inference="protein motif:PFAM:PF05258"
/note="PFAM: protein of unknown function DUF721;
KEGG: dvl:Dvul_2350 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478639.1"
/db_xref="GI:220903327"
/db_xref="InterPro:IPR007922"
/db_xref="GeneID:7283692"
/translation="MYPRVFRKKDKNAEPIAAGEVLASVLAGLGVEPGQAQARHRLAH
LWENWSMVMGPDLGMLARPLGHHRDLLLIGAEDAMLAQELHLMSGELLERANAFMEEP
FFGGVKVSLLMGKAGLDVTARKPLPEEEQGWRAPRRHMPEPVHANGAFLGRMDPASPV
ARAYARFAEKAGHSGV"
misc_feature 52505..52768
/locus_tag="Ddes_0041"
/note="Protein of unknown function (DUF721); Region:
DUF721; pfam05258"
/db_xref="CDD:203224"
gene 53493..53870
/locus_tag="Ddes_0042"
/db_xref="GeneID:7283693"
CDS 53493..53870
/locus_tag="Ddes_0042"
/inference="similar to AA sequence:KEGG:Dvul_2048"
/note="KEGG: dvl:Dvul_2048 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478640.1"
/db_xref="GI:220903328"
/db_xref="GeneID:7283693"
/translation="MNVQKSMEDICLKHDNGGDFSFRGRLFSECSWYDEALGMLTRQK
LYVTDTNDQVYYIVRSSGQERSRHAYRLAVRGDNCIIHNGMAEMSLQFDMLMLAVRGL
CGLEAGATPTLSMVEEMLKAANA"
gene complement(54382..55287)
/locus_tag="Ddes_0043"
/db_xref="GeneID:7283694"
CDS complement(54382..55287)
/locus_tag="Ddes_0043"
/inference="similar to AA sequence:KEGG:Dvul_2321"
/note="KEGG: dvl:Dvul_2321 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478641.1"
/db_xref="GI:220903329"
/db_xref="GeneID:7283694"
/translation="MLIEKLQPLTDVFDWLHHSWERATTQRRVALLILWVYLLALLGV
ELNRQAMLPPWLAGVTPTSHFYAIHLAFTLILVLEVMSLVFIIPSSLSQSMGKQFEIL
TLILLRNAFKELAHLPEPVSVAGDMTPVLYIAISGTGALLVYLCLGLYKRIARRHMHF
IQSPDMRMRYVMSKKLLALALFIIFMGTALRDFALFVTTGGDQNFFETLYTILIFSDI
TMVLIAQRYMPAFHAVFRNSGFVIGTLLMRLALSAAPLWSPVIGLFAAFFVLALTWVT
NYFTPPPPPDGAQEQSQPALPETTD"
gene 55813..59364
/locus_tag="Ddes_0044"
/db_xref="GeneID:7283695"
CDS 55813..59364
/locus_tag="Ddes_0044"
/inference="protein motif:PFAM:PF02913"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein; protein of unknown function DUF224 cysteine-rich
region domain protein; FAD linked oxidase domain protein;
KEGG: dvl:Dvul_0306 FAD linked oxidase domain-containing
protein"
/codon_start=1
/transl_table=11
/product="FAD linked oxidase domain-containing protein"
/protein_id="YP_002478642.1"
/db_xref="GI:220903330"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR004017"
/db_xref="InterPro:IPR004113"
/db_xref="InterPro:IPR006094"
/db_xref="InterPro:IPR017900"
/db_xref="GeneID:7283695"
/translation="MPHKGPHISISPDYVVNRILRINIDDFAEWPESVRNLAIAIAEE
LFLMAYNPFIDADTVRSSVRDSFEKESVSLAHYYATAIGEGITMFWSAHEAEMEFREK
LISALGDILPAECILTNPGALVESATDATDLRMELPLLVVEPDTTEQVAELVKLANDM
KFALIPRGGGSGMTGGAVPARKRTLIVSLTRLTRVGPIDMENMSVTCEAGAITQTVIN
AVDAAGALFSVDPASKQASSIGGNISENAGGPMAFEYGTTLDNLLWWRMVTPTGEIIT
VERENHPRHKILPHETAVFVVKDVSGGVRNVVHLRGDEIRLPGLGKDVTNKALGGLPG
MQKEGVDGIITEAGFIVHPKPRHKRVMVLEFFGRSMHPAAVVVRELVALRNRIREEGD
YAHLSAMEEFNAKYVQAIEYKRKSEQYDGAPISVIILQVDGDDPYLLDTCVGDIVSVV
EQQENVDIIVAADDKEGERFWEDRHKLSAIAKRTSGFKLNEDVVIPMDRIPDFALFLE
QINLECTAASYRHALQEVGRLPGFPMEDKDFNREFSQASKAASGDVAAADVSDVEMAE
RAEAFLEVLKEKYSHLAKKISKIRDYMEASRIVVASHMHAGDGNCHVNIPVNSNDAQM
LEEAEEVAARVMAECQEMGGEVSGEHGIGITKIAFFSKEKMDALRAFKERVDPRDVMN
PAKLVYRDLPVRPFTFSFNRLIRDIRESGLPDKDKLIHLLTSIQVCTRCGKCKQVCSM
CYPERSMQYHPRNKNMVMGMLLEAVYYSQVNKGRIDDRLLKWMRDLVEHCTACGRCMA
NCPVKIPSGEVALTLRALLEHEGASGHPIKGRALEWLVRDIAHRAPKAAKVASLGQKM
QNKFLGFVPAVWKRRMQSPLFSGRGPKMGYTNLYESLKLHRGAVFTPAEPAPGMPLAL
YFPGCGGALFYDRIGTSSIMLLLKAGFAVAVPPRHMCCGFPLLAAGMDTAFEDNMAQN
RQYLASMLRSLVKQGFDCKYLVTACGSCRDGLERLNIQAQFPDLVMRDVVQLTMPLLS
REDLRAPVAEGSRLVYHGACHCEWADVHKVKGQRQVVRALGEFSGADVVLSPGCCGES
GMGAMTSPQIYNLLRTRKQQRLEDAMGENYDGPVVVGCPSCKIGIARCLINMHDKHSV
LHVAEWLAGQIDGEDRRQSFRKKVNETRGDVRVIDLK"
misc_feature 56128..>57324
/locus_tag="Ddes_0044"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:30625"
misc_feature 56224..56643
/locus_tag="Ddes_0044"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature <57547..57870
/locus_tag="Ddes_0044"
/note="FAD linked oxidases, C-terminal domain; Region:
FAD-oxidase_C; pfam02913"
/db_xref="CDD:202465"
misc_feature 57994..59292
/locus_tag="Ddes_0044"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:30596"
misc_feature 58549..58812
/locus_tag="Ddes_0044"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature 58945..59202
/locus_tag="Ddes_0044"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene complement(59454..60860)
/locus_tag="Ddes_0045"
/db_xref="GeneID:7283696"
CDS complement(59454..60860)
/locus_tag="Ddes_0045"
/EC_number="4.1.1.15"
/inference="protein motif:TFAM:TIGR01788"
/note="KEGG: lip:LI0261 glutamate decarboxylase isozyme;
TIGRFAM: glutamate decarboxylase;
PFAM: Pyridoxal-dependent decarboxylase"
/codon_start=1
/transl_table=11
/product="glutamate decarboxylase"
/protein_id="YP_002478643.1"
/db_xref="GI:220903331"
/db_xref="InterPro:IPR002129"
/db_xref="InterPro:IPR010107"
/db_xref="GeneID:7283696"
/translation="MTAKNTLRNTVLDDTYAASDMANAMPRHEMPQQESRPRDVYQAI
HDELMLDGNSRQNLATFCQTWVDPEINQIMAECVDKNMIDKDEYPQTAETETRCVHML
ADLWHSPDPKGTLGCSTTGSSEAAMLGGLAMKRRWVNMRKAAGKPYDKPNMVCGPVQV
CWEKFARYWDVELREIPMEKDRLIMTAEEVIKRCDENTIGVVPTLGVTFTGQYEPVEE
VSKALDKLQKDKGWDIPIHVDGASGGFLAPFIEPDLLWDFRLPRVKSINSSGHKFGLA
PLGVGWVVWREKSDLPEDLIFNVNYLGGNMPTFALNFSRPGGQIIAQYYNFLRLGREG
YRRIHQNCYDTARFLGDEIAKLGPFEVLYNGRGGIPALCWTFKANAKTSYSLYDLSDR
LRSRGWQVPAYSMPAHREDLVVMRVLVRHGFSRDLGSLLVDDLKRAMAHFDAHPVSKP
LSETEAGSNSHAGRAAKK"
misc_feature complement(59490..60860)
/locus_tag="Ddes_0045"
/note="Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism]; Region:
GadB; COG0076"
/db_xref="CDD:30425"
misc_feature complement(59547..60692)
/locus_tag="Ddes_0045"
/note="DOPA decarboxylase family. This family belongs to
pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups in
this CD correspond to DOPA/tyrosine decarboxylase (DDC),
histidine decarboxylase (HDC), and...; Region:
DOPA_deC_like; cd06450"
/db_xref="CDD:99743"
misc_feature complement(order(60045..60047,60054..60056,60135..60137,
60144..60146,60249..60251,60483..60485,60492..60497))
/locus_tag="Ddes_0045"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99743"
misc_feature complement(60045..60047)
/locus_tag="Ddes_0045"
/note="catalytic residue [active]"
/db_xref="CDD:99743"
gene complement(60864..62351)
/locus_tag="Ddes_0046"
/db_xref="GeneID:7283697"
CDS complement(60864..62351)
/locus_tag="Ddes_0046"
/inference="protein motif:PFAM:PF00324"
/note="PFAM: amino acid permease-associated region;
KEGG: lip:LI0262 amino acid transporters"
/codon_start=1
/transl_table=11
/product="amino acid permease-associated protein"
/protein_id="YP_002478644.1"
/db_xref="GI:220903332"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:7283697"
/translation="MPEQPPKNVAISTLALMALGTVVSLNALPMMALEGLSLVFYILF
ATVVFLLPAGMVSAELGSAFAERKGGVYIWVKEAFGPRWGFVAIWLQWVQTLAWYPTI
LGFSAASLAYCLGDPHLSQSGVYTGLVSIGIYACATGVALSGTGAVNTLTKYSVFMGT
LVPSLFIIILGLFWIDQGNAVAFLTQNTQIDGHMVREHVHPRFFPHFTGLGSVTFLAG
ILLMFSGIEVQGVQAASMKNPRRDFPIAMLLASAIAFLIYLMGSLAVATVLTPKEISL
TAGLMEAFSLMLHKFDLDFLVPLIALLITFGGVGNVMAWVSGPSKGMLQTARDGEAPP
FFGKVNKAGAPVALLAIQGVIVLALSSIYFLVKNVSIAFFILTTLTASIYLAMYLLMF
GAAIRLRITRPDLPRTYSVPGGLVGMFLIGGTGLLGVAFAFTAGFFPPHNLPVGNPAL
YVALVAGGLSIFIAIPLIIQAFKKPQWKRTTSAENNFSINGNNGD"
sig_peptide complement(62268..62351)
/locus_tag="Ddes_0046"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.898) with cleavage site probability 0.673 at
residue 28"
misc_feature complement(60888..62333)
/locus_tag="Ddes_0046"
/note="putative glutamate/gamma-aminobutyrate antiporter;
Region: put_Glu_GABA_T; TIGR03813"
/db_xref="CDD:163525"
gene 62754..64253
/locus_tag="Ddes_0047"
/db_xref="GeneID:7283698"
CDS 62754..64253
/locus_tag="Ddes_0047"
/inference="protein motif:PFAM:PF00324"
/note="PFAM: amino acid permease-associated region;
KEGG: sfv:SFV_2499 putative amino acid antiporter"
/codon_start=1
/transl_table=11
/product="amino acid permease-associated protein"
/protein_id="YP_002478645.1"
/db_xref="GI:220903333"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:7283698"
/translation="MGEVKEQTSGSKMTITTIVIMNITAVVSLRFLPSEAEYGLGAIF
YYAFAALVFLVPMALVAAELATTYPEKGGVFRWVSEAFGPRWGFLAMAMLWIEVIPYF
PTVLTFGAVSIAFMDPNVSMAETMAANKWYITGFVLLVYWISVFIALRGVGIFARVSK
WCGIVGTIIPAAVVVVLGFAYLFCSGKPPLIELSWGALIPDFTNFSNVVLAASIFLAY
AGMEMNAVHVKDMDNPTKKYPIAITIASVGTVAIFLLSTLGIAFVVPKQDINLTQSLL
LAYDLLFKWINAEWLGSVLAVMLAFGVLGGVVTWIAGPNTGVLAVAKAGYLPRWFQKT
NRFGMGSHLMIVQAVVVTILSITFVVMPSVQAAFQILSQLTVILYLVMYMLMFASGIR
LRLSQPNRPRPYRVPGMYLWATLGFLGSLLAFTLSFVPPSQISIGSPETYMMYLIVLV
VIFVAIPLTIFALRKPEWRDPNSDFEPFTWEKEKAQAAAQPQTGTQAGS"
misc_feature 62835..64193
/locus_tag="Ddes_0047"
/note="putative glutamate/gamma-aminobutyrate antiporter;
Region: put_Glu_GABA_T; TIGR03813"
/db_xref="CDD:163525"
gene 64339..65271
/locus_tag="Ddes_0048"
/db_xref="GeneID:7283699"
CDS 64339..65271
/locus_tag="Ddes_0048"
/EC_number="3.5.1.2"
/inference="protein motif:PRIAM:3.5.1.2"
/note="catalyzes the formation of glutamate from
glutamine"
/codon_start=1
/transl_table=11
/product="glutaminase"
/protein_id="YP_002478646.1"
/db_xref="GI:220903334"
/db_xref="InterPro:IPR015868"
/db_xref="GeneID:7283699"
/translation="MPAIEKIQSVVNSAYAQFSKASGGANADYIPFLANIPSDLAAVA
VVTAQGQVAAAGDAQYRFAIESISKVCTLALALEDFGPQAVQEKIGTSPTGLPFNSVM
ALELHGDKPLSPLVNAGAMASASLVKAGSTEERWQRILDMQRRLGSKEIAISDELNQS
EQTTNFHNRGIAWLLYSAGYMYCDPMEACDVYTRQCSTLLNTVELATVGATIAARGRN
PVTGEQVLKPEHCPCIMAEMTMEGMYDSSGDWAYKVGLPGKSGVGGGILTIVPGIMAI
AAFSPPLDSVGNSVRGQKMAAFVANELGYNLYKA"
misc_feature 64339..65268
/locus_tag="Ddes_0048"
/note="glutaminase; Reviewed; Region: PRK12356"
/db_xref="CDD:183468"
gene complement(65454..66422)
/locus_tag="Ddes_0049"
/db_xref="GeneID:7283700"
CDS complement(65454..66422)
/locus_tag="Ddes_0049"
/inference="protein motif:PFAM:PF01965"
/note="PFAM: helix-turn-helix- domain containing protein
AraC type; ThiJ/PfpI domain protein;
KEGG: sen:SACE_4268 AraC family transcription regulator"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_002478647.1"
/db_xref="GI:220903335"
/db_xref="InterPro:IPR000005"
/db_xref="InterPro:IPR002818"
/db_xref="GeneID:7283700"
/translation="MNMHNIGILALPGFVPFDCSIPFQLFSLACGKSGEHAYDLNFIG
DTGRVSSGQFSIEGALPLAAMQEMNTVIVPGVTPSFGVCSQGVLDALRQARDAGIRMA
SICTGACILAAAGLLDGMQATTHWSVAEELAARYPQIDVEADILFVDNGQVLTSAGLA
SGIDLCLHMIRQDLGAAAAEELAAFFVVPMERDGGQRQFIRRTGPESGGNLAPLLLWM
QENMHKNLTLSSICRQAHMSSRTLNRRFLEQVGAPPMLWLTRARVRRSQALLESSSMS
VEEIAASTGFGSAASLRDHFRRTVGTSPTAWRKTFKRYYTGQDMRE"
misc_feature complement(65484..66407)
/locus_tag="Ddes_0049"
/note="Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription]; Region: COG4977"
/db_xref="CDD:34583"
misc_feature complement(65856..66407)
/locus_tag="Ddes_0049"
/note="AraC transcriptional regulators having a Type 1
glutamine amidotransferase (GATase1)-like domain; Region:
GATase1_AraC_1; cd03137"
/db_xref="CDD:153231"
misc_feature complement(66108..66110)
/locus_tag="Ddes_0049"
/note="conserved cys residue [active]"
/db_xref="CDD:153231"
misc_feature complement(65646..65771)
/locus_tag="Ddes_0049"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(65496..65612)
/locus_tag="Ddes_0049"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 66603..67442
/locus_tag="Ddes_0050"
/db_xref="GeneID:7283701"
CDS 66603..67442
/locus_tag="Ddes_0050"
/inference="protein motif:PFAM:PF01965"
/note="PFAM: ThiJ/PfpI domain protein;
KEGG: plu:plu3545 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ThiJ/PfpI domain-containing protein"
/protein_id="YP_002478648.1"
/db_xref="GI:220903336"
/db_xref="InterPro:IPR002818"
/db_xref="InterPro:IPR006311"
/db_xref="GeneID:7283701"
/translation="MTRRDFTVSALSAAAGMALAGNASDALAAGTAGEGQKPRQDADK
KPHIAFVLYEGMTVLDLIGPAEVLGGPQFRVDYVSRSMAPVYAESRADKRLGFMPTAT
FANVASADIVCVPGTSDPYLQIQQQDMVEWLAAVGQKAQWVTSVCTGSFLLGAAGLLQ
GYKATSHWTLVDELAWFGALPVQERVVRDRNRVTGAGVTSGIDFGLVLLALVAGEETA
NIKQLLLEYDPAPPFRSGSPRSASPALVETVRNQYQAHIRENMPYARSSLEAAAQRLG
VRR"
sig_peptide 66603..66689
/locus_tag="Ddes_0050"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.508 at
residue 29"
misc_feature 66738..67256
/locus_tag="Ddes_0050"
/note="Putative intracellular protease/amidase [General
function prediction only]; Region: ThiJ; COG0693"
/db_xref="CDD:31037"
misc_feature 66744..67286
/locus_tag="Ddes_0050"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in a subgroup of proteins similar to PfpI
from Pyrococcus furiosus; Region: GATase1_PfpI_2; cd03139"
/db_xref="CDD:153233"
misc_feature 67041..67043
/locus_tag="Ddes_0050"
/note="conserved cys residue [active]"
/db_xref="CDD:153233"
gene complement(67564..68517)
/locus_tag="Ddes_0051"
/db_xref="GeneID:7283702"
CDS complement(67564..68517)
/locus_tag="Ddes_0051"
/inference="protein motif:PFAM:PF01145"
/note="PFAM: band 7 protein;
KEGG: cts:Ctha_1815 band 7 protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478649.1"
/db_xref="GI:220903337"
/db_xref="InterPro:IPR001107"
/db_xref="InterPro:IPR001972"
/db_xref="GeneID:7283702"
/translation="MEIVNSFGWLFLLAVLVIIILVKTAVVVPNQSAFIVERLGKFSK
VLYAGFHILVPFVDVIAYKRSLKEQVLDVPKQTCITRDNVSVDIDGVLYLQIITPEKS
AYGISDYEWGAIQLAQTSLRSVIGTLELDRTFEERTRINQEVVEALDAATSPWGVKVL
RYEIRDITPPITVMEAMEKQMRAEREKRAAIAQSEGEMQSRINLAEGAKAAAIAQSEG
EKQAIINQAEGEAAQIRTVAQATAEGLRIVGEPLGNDSVAAAQLRLAEAYITQFGHIA
KQGNSLIIPADIADTAGMVAAVSKIIKPGEGLSKNVSRPQG"
misc_feature complement(67780..68433)
/locus_tag="Ddes_0051"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:30678"
misc_feature complement(67804..68433)
/locus_tag="Ddes_0051"
/note="Band_7_stomatin_like: A subgroup of the band 7
domain of flotillin (reggie) like proteins similar to
stomatin and podicin (two lipid raft-associated integral
membrane proteins). Individual proteins of this band 7
domain family may cluster to form...; Region:
Band_7_stomatin_like; cd03403"
/db_xref="CDD:48215"
gene complement(68695..69171)
/locus_tag="Ddes_0052"
/db_xref="GeneID:7283703"
CDS complement(68695..69171)
/locus_tag="Ddes_0052"
/inference="protein motif:PFAM:PF01957"
/note="PFAM: protein of unknown function DUF107;
KEGG: dps:DP1870 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478650.1"
/db_xref="GI:220903338"
/db_xref="InterPro:IPR002810"
/db_xref="GeneID:7283703"
/translation="MNAPLLWFILGAAFFVAELMTPAMVLLFFGVGAWVAALTALMGL
GLAWQLITFICLSLLTLLFLRRRLRAVFGGRAHRVPAGNCNSHGEESCSPHPLTGRQG
VVSKAVHPGKIGEVSIDGSFWRATAHEKLAEGSPVRVQGADPGDALVLHVSPATKS"
misc_feature complement(68725..69171)
/locus_tag="Ddes_0052"
/note="Membrane protein implicated in regulation of
membrane protease activity [Posttranslational
modification, protein turnover, chaperones / Intracellular
trafficking and secretion]; Region: COG1585"
/db_xref="CDD:31773"
gene complement(69297..70250)
/locus_tag="Ddes_0053"
/db_xref="GeneID:7283704"
CDS complement(69297..70250)
/locus_tag="Ddes_0053"
/inference="similar to AA sequence:KEGG:Dvul_2440"
/note="KEGG: dvl:Dvul_2440 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478651.1"
/db_xref="GI:220903339"
/db_xref="GeneID:7283704"
/translation="MSKKSKSGAPETADKENSVKQQPADGAETQAHAEENARVHHEGL
GDAWAVLTGRNPAEIMGQIVSTVLHEGGTRPSWQWKHGGKDHIMMAWPQDQPVRASVL
MAGEEGEKLDPVSAVPLLDGLPNDLTVEGVFPWQNGLGANVAVSMIEGKNPMWFFDPL
YGRDKNDLTPEITHTFLLAGLAFAVRKALLDHMTITQGPQYEAHAEAWLEANPGKGRL
DVPPLQVDVSDRHMIMPGRNFCEYQMRAVIEEVQDYQLEKMPVKALYVTFPFENRPSM
RLVIYASKMILGDFEPEAGQAIDAYIWLQGRVIDFDQGPQQ"
gene complement(70353..72584)
/locus_tag="Ddes_0054"
/db_xref="GeneID:7283705"
CDS complement(70353..72584)
/locus_tag="Ddes_0054"
/EC_number="2.7.7.8"
/inference="protein motif:PRIAM:2.7.7.8"
/note="KEGG: dvl:Dvul_2438 polynucleotide
phosphorylase/polyadenylase;
PFAM: 3' exoribonuclease; RNA binding S1 domain protein;
KH type 1 domain protein; Exoribonuclease, phosphorolytic
domain 2; Polynucleotide phosphorylase, phosphorolytic
RNA-binding, bacterial/organelle-type;
SMART: KH domain protein"
/codon_start=1
/transl_table=11
/product="polynucleotide phosphorylase/polyadenylase"
/protein_id="YP_002478652.1"
/db_xref="GI:220903340"
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR015847"
/db_xref="InterPro:IPR015848"
/db_xref="GeneID:7283705"
/translation="MSQDIFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVV
LVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRP
IRPLFPKGLNEDVQVLASVISADQENESDVLALTGASAALMLSPLPFEGPVAGGRIAR
VGGQFVLNPTFEQQAQSDLNIVFAASGDALTMVEGDARFISEDVIIEALEWGRLQILP
LVEIQHKLRELCGKPKMNFTPHQDDEALVACVHELALANGMEEALRVPEKMARKDARK
AVKDKVMETLKADPAWAENEAALKAVSDILGGLEKKLVRARIVNEGTRIDGRDTTTVR
PIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFP
PFSVGEVKPVRVSRREIGHGALAEKSLRPVLPADADFPFTLRVVAETMESNGSSSMAA
VCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEKFIVLTDILGDEDALGDMDFKIAGTAE
GVTGVQMDIKITGLTTEIMRTAMQQAREGRLHILEEMAKAIASPRKELSRYAPQHAEV
FVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSGRVSIFAPTAEALEKAREMVSYYD
QRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALVHVSQLDVNRVEQPGDVARLGEDMLV
KVIEINGDRIRASRKAVLLEEQGHPWNPEDTARPQRSDRGDRGDRRGDRGGRDRRDRG
DRR"
misc_feature complement(70485..72572)
/locus_tag="Ddes_0054"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:183327"
misc_feature complement(71874..72557)
/locus_tag="Ddes_0054"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature complement(order(72456..72458,72465..72467,72471..72473,
72477..72479,72507..72509,72516..72518,72522..72524,
72549..72551,72555..72557))
/locus_tag="Ddes_0054"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature complement(order(72207..72221,72231..72233,72237..72239,
72243..72245,72318..72320,72333..72347,72354..72365,
72369..72380,72384..72386,72390..72392,72432..72434,
72438..72440,72444..72446,72450..72452,72477..72479,
72492..72509))
/locus_tag="Ddes_0054"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature complement(71598..>71687)
/locus_tag="Ddes_0054"
/note="Polyribonucleotide nucleotidyltransferase, RNA
binding domain; Region: PNPase; pfam03726"
/db_xref="CDD:202745"
misc_feature complement(70929..71591)
/locus_tag="Ddes_0054"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature complement(order(70938..70943,70953..70955,70965..70967,
70977..70979,71553..71555,71562..71591))
/locus_tag="Ddes_0054"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature complement(order(71259..71267,71271..71273,71277..71279,
71283..71285,71373..71375,71376..71378,71385..71393,
71397..71408,71415..71417,71421..71423,71469..71477,
71487..71495,71499..71501,71505..71507,71517..71522,
71544..71558,71568..71570,71574..71576))
/locus_tag="Ddes_0054"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature complement(order(71037..71039,71043..71045,71079..71081,
71085..71087,71103..71105,71244..71252,71352..71354,
71364..71366,71412..71414,71418..71420))
/locus_tag="Ddes_0054"
/note="active site"
/db_xref="CDD:206769"
misc_feature complement(70725..70889)
/locus_tag="Ddes_0054"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:29003"
misc_feature complement(order(70794..70805,70818..70823,70830..70835,
70842..70856,70860..70868,70872..70874))
/locus_tag="Ddes_0054"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:29003"
misc_feature complement(70842..70853)
/locus_tag="Ddes_0054"
/note="G-X-X-G motif; other site"
/db_xref="CDD:29003"
misc_feature complement(70497..70697)
/locus_tag="Ddes_0054"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:88437"
misc_feature complement(order(70611..70613,70617..70619,70647..70649,
70671..70673))
/locus_tag="Ddes_0054"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88437"
misc_feature complement(70551..70556)
/locus_tag="Ddes_0054"
/note="domain interface; other site"
/db_xref="CDD:88437"
gene complement(72753..73022)
/gene="rpsO"
/locus_tag="Ddes_0055"
/db_xref="GeneID:7283706"
CDS complement(72753..73022)
/gene="rpsO"
/locus_tag="Ddes_0055"
/inference="protein motif:PFAM:PF00312"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_002478653.1"
/db_xref="GI:220903341"
/db_xref="InterPro:IPR000589"
/db_xref="InterPro:IPR005290"
/db_xref="GeneID:7283706"
/translation="MVLDPTQKKSVIDAHAKHEGDTGSPEVQVALLTARIEDLTGHFK
EHKKDFHSRTGLLKLVGRRRNILNYLKKTDVQRYRALIEKLGLRK"
misc_feature complement(72765..73004)
/gene="rpsO"
/locus_tag="Ddes_0055"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature complement(order(72816..72818,72828..72830,72867..72872,
72876..72881,72885..72887,72897..72899,72906..72908,
72918..72920,72939..72941,72948..72950,72999..73001))
/gene="rpsO"
/locus_tag="Ddes_0055"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(72771..72773,72783..72785,72903..72905,
72912..72914,72921..72926,72933..72935))
/gene="rpsO"
/locus_tag="Ddes_0055"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(72765..72770,72831..72833,72843..72845))
/gene="rpsO"
/locus_tag="Ddes_0055"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene complement(73067..74131)
/locus_tag="Ddes_0056"
/db_xref="GeneID:7283707"
CDS complement(73067..74131)
/locus_tag="Ddes_0056"
/inference="protein motif:TFAM:TIGR00431"
/note="TIGRFAM: tRNA pseudouridine synthase B;
PFAM: pseudouridylate synthase TruB domain protein;
KEGG: dvl:Dvul_2436 tRNA pseudouridine synthase B"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_002478654.1"
/db_xref="GI:220903342"
/db_xref="InterPro:IPR002501"
/db_xref="InterPro:IPR014780"
/db_xref="GeneID:7283707"
/translation="MVKKDNVAQARPFQCPESPAPNSPLAGGSGPSAYGQHEQNADSA
THGQTRRTPPLPQQHGVLVLNKPSGPTSARCLTAIKRLGQKKIGHAGTLDPLASGVLL
VLLGQATKLSGHLMSGGGKVYNGVLRLGQTTDTWDIEGQVTAEAPWQHISEDDVRREV
TAWLQLTEQPVPSYSAAKHEGQPLYKLARKGLDAPQKTKFMEISQADVLEISLPLVRF
RVACSSGTYIRSLAHSLGMRLGCGAVLTELTREYSHPFGLDVARDPADFTADPTLLPG
CVIPVADALPHWPRVDLTPEEAARVRNGMAVSCRTPQADAAPGDELAFLMDQGQALAL
AKREITPAGPCWAVMRGLWN"
misc_feature complement(73112..73957)
/locus_tag="Ddes_0056"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK05033"
/db_xref="CDD:179918"
misc_feature complement(73325..73954)
/locus_tag="Ddes_0056"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature complement(order(73382..73384,73445..73462,73535..73537,
73598..73612,73763..73765,73769..73771,73784..73786,
73793..73798,73805..73807,73847..73861,73865..73873,
73904..73906,73913..73915,73919..73921))
/locus_tag="Ddes_0056"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature complement(order(73445..73447,73850..73861))
/locus_tag="Ddes_0056"
/note="active site"
/db_xref="CDD:211339"
gene complement(74700..75809)
/locus_tag="Ddes_0057"
/db_xref="GeneID:7283708"
CDS complement(74700..75809)
/locus_tag="Ddes_0057"
/inference="protein motif:PFAM:PF01368"
/note="PFAM: phosphoesterase RecJ domain protein;
phosphoesterase DHHA1;
KEGG: lip:LI0536 exopolyphosphatase-like protein"
/codon_start=1
/transl_table=11
/product="phosphoesterase RecJ domain-containing protein"
/protein_id="YP_002478655.1"
/db_xref="GI:220903343"
/db_xref="InterPro:IPR001667"
/db_xref="InterPro:IPR003156"
/db_xref="GeneID:7283708"
/translation="MQPTDFIPAPYVQDALRMVEALKGMDRIVVAGHVNPDGDAAGSV
AAAGHILRAMGKEFMLYAAPGLPRYLGFFPMPAVVHTSLAHTPFTPQCALLLDCGEPE
RLGSELAALLPQLDTVNIDHHLGGDGMGSLGNWVVTEAAATAQLMAYVAMAADLPLTG
DLGLSVALGLLTDTGGFCHGNTSADVLALASHLVANGCHLHWLREKMDNDWSLGRWRL
WGQLMERAVVEHHGQIGFCPVSLKDLGRCQALKEDLEGFVEQLRRLRGVKVAALLREE
SPRLCKFSLRSYGSIDVRAMAADMGGGGHFNAAGGTLRLPLKKAGEELLRRIALRLDG
RAPEIPEAPGTGEERHTPDDETAAGNNDQSQVTTS"
misc_feature complement(74826..75770)
/locus_tag="Ddes_0057"
/note="Exopolyphosphatase-related proteins [General
function prediction only]; Region: COG0618"
/db_xref="CDD:30963"
misc_feature complement(75297..75749)
/locus_tag="Ddes_0057"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
gene complement(75796..76113)
/locus_tag="Ddes_0058"
/db_xref="GeneID:7283709"
CDS complement(75796..76113)
/locus_tag="Ddes_0058"
/inference="protein motif:PFAM:PF04456"
/note="PFAM: protein of unknown function DUF503;
KEGG: dvl:Dvul_2434 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478656.1"
/db_xref="GI:220903344"
/db_xref="InterPro:IPR007546"
/db_xref="GeneID:7283709"
/translation="MKRKHIHMTMFMAVLTVEFSLHGNDNLKAKRRVANSLKQKTRNK
FNVAIAEAGTENSLSRLRLAVVSISNSEGHLRSRMDKCALMMEAVCPEEMVDSQVEIY
AAD"
sig_peptide complement(76042..76113)
/locus_tag="Ddes_0058"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.774) with cleavage site probability 0.772 at
residue 24"
misc_feature complement(75814..76083)
/locus_tag="Ddes_0058"
/note="Protein of unknown function (DUF503); Region:
DUF503; pfam04456"
/db_xref="CDD:146881"
gene complement(76502..79495)
/gene="infB"
/locus_tag="Ddes_0059"
/db_xref="GeneID:7283710"
CDS complement(76502..79495)
/gene="infB"
/locus_tag="Ddes_0059"
/inference="protein motif:TFAM:TIGR00487"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_002478657.1"
/db_xref="GI:220903345"
/db_xref="InterPro:IPR000178"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR006847"
/db_xref="GeneID:7283710"
/translation="MSEEKIKVSELAKEFPAVPNKDMLRALRELGASAKSMAGSLTTE
EAARVREHFAEQKQADAERSGSHPNVIVRRRRKDADKADAPEVTEAAPAAREEVAPPA
EEKPAAVEAPAQAEPVAEAPAASPHKVEEKAAPEAAKAEPAEKAKSSKARVVSAARVI
SRPGEEEEKKPEPVVESKPEPVAEISPVAAALAAREAAARAEEKSSEKGEEKGAKAAR
LARPDASAMPEGSSAPTLPQRAPEARTEAWKDADASAAADAAPRRAPRADGGQAPSAA
PQVRIISRPAPGSQPDRSTRPAGGRPGAPGGPRGDSAGRPPRPGGPRPSGPGGPRPAG
GPRPGGFGQQPAAPASPTDTRDGQSKKKRLKGRRTVDFQQGDFGGRRDDDDSQRLNRG
KGRRKGGKPTSSQATQPLKAAKRKIRVTEAIRVADMAHQMGLKANEIIKVLFGLGVMA
TINQALDFDTATLVASEFGYEVEKAGFSEDDYLTPKEVDAPETLKPRPPVVTIMGHVD
HGKTSLLDAIRKSNVTSGEAGGITQHIGAYHVKTKRGEIVFLDTPGHEAFTAMRARGA
QVTDLVILVVAADDGVMEQTREAINHARAAGVPIMVAVNKMDKPSADPDRVLRELAEL
GLQAEEWGGDTIVAKVAAKTRMGLDDLLEMVALQSEIMELKANPDKAAKGHIVEAKLD
KGRGPVATVLIQEGTLRQGDSFVCGPFSGRVRALMNDQGKKVKEAGPSLPVEVQGFEG
VPEAGEEFFVVSDEKLARRIADSRAIKQRERELASESRVTLETFLSQRKSDQETLTLN
LVLKSDVQGSLEAITEALLKQSTDKVRINVVHGGTGAITESDILLASASQAIIIGFNV
RPTAKIKDVAEHENVDIRFYEIIYKLVDDIKSAMAGLLAPVQREVYLGQAEVRDTFSV
PKIGLIAGSYVADGKIARNAGVRLLRDGVVVYTGKISSLKRFKDDAREVVKGNECGVG
LENFNDVKIGDIIEAFETVEEAATL"
misc_feature complement(79337..79489)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(76505..78256)
/gene="infB"
/locus_tag="Ddes_0059"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature complement(78083..78238)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(77510..78001)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature complement(77960..77983)
/gene="infB"
/locus_tag="Ddes_0059"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature complement(order(77639..77641,77651..77653,77756..77761,
77828..77833,77885..77890,77936..77941,77948..77950,
77957..77962,77972..77974,77978..77980))
/gene="infB"
/locus_tag="Ddes_0059"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature complement(order(77567..77575,77669..77674,77678..77683,
77828..77830,77957..77977))
/gene="infB"
/locus_tag="Ddes_0059"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature complement(77888..77908)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature complement(77900..77902)
/gene="infB"
/locus_tag="Ddes_0059"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature complement(77834..77845)
/gene="infB"
/locus_tag="Ddes_0059"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature complement(77783..77839)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature complement(77672..77683)
/gene="infB"
/locus_tag="Ddes_0059"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature complement(77567..77575)
/gene="infB"
/locus_tag="Ddes_0059"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature complement(77201..77482)
/gene="infB"
/locus_tag="Ddes_0059"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature complement(76835..77161)
/gene="infB"
/locus_tag="Ddes_0059"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature complement(76535..76786)
/gene="infB"
/locus_tag="Ddes_0059"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene complement(79488..79733)
/locus_tag="Ddes_0060"
/db_xref="GeneID:7283711"
CDS complement(79488..79733)
/locus_tag="Ddes_0060"
/inference="protein motif:PFAM:PF04296"
/note="PFAM: protein of unknown function DUF448;
KEGG: dvu:DVU0509 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478658.1"
/db_xref="GI:220903346"
/db_xref="InterPro:IPR007393"
/db_xref="GeneID:7283711"
/translation="MGERQETAVAVEGPVRMCVMCRRRFAKAQLTRHVLTPQGILTID
AEKTRPGRGWYLCSDAACMAKFVRFRPGARRKGGKHV"
misc_feature complement(<79539..79688)
/locus_tag="Ddes_0060"
/note="Protein of unknown function (DUF448); Region:
DUF448; pfam04296"
/db_xref="CDD:202962"
misc_feature complement(order(79569..79571,79638..79640,79686..79688))
/locus_tag="Ddes_0060"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29345"
gene complement(79744..81093)
/gene="nusA"
/locus_tag="Ddes_0061"
/db_xref="GeneID:7283712"
CDS complement(79744..81093)
/gene="nusA"
/locus_tag="Ddes_0061"
/inference="protein motif:TFAM:TIGR01953"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_002478659.1"
/db_xref="GI:220903347"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR010213"
/db_xref="InterPro:IPR013735"
/db_xref="GeneID:7283712"
/translation="MNLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMD
VEVSYNDETGDIEVYQFKIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVE
DLGRIAAQSAKQVIIQRMRDAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRTE
AILPREEQIPREHYKRGDRVQALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVD
DGVVQIMGVARDPGSRAKVAVLSRERDVDPVGACVGVRGSRIQNIVQELHGERIDIVV
WSADIATYARNALAPALVSRIVVDEEENLLEVIVPDDQLTNAIGRKGQNVKLAARLLG
WKVDIFTETRYNEANAIGHGLEQVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKL
TISASRIADLRSAINFLAPVVEETPESSAVELGRTHADEEDSGQDQTGDSPREDAQD"
misc_feature complement(79825..81093)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature complement(80713..81084)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature complement(80494..80694)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature complement(order(80602..80604,80608..80610,80635..80637,
80659..80661))
/gene="nusA"
/locus_tag="Ddes_0061"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature complement(order(80509..80511,80608..80610,80614..80616,
80641..80643,80653..80655))
/gene="nusA"
/locus_tag="Ddes_0061"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature complement(80203..80403)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature complement(80323..80334)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48407"
misc_feature complement(80077..80253)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature complement(80125..80136)
/gene="nusA"
/locus_tag="Ddes_0061"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
gene complement(81202..81978)
/locus_tag="Ddes_0062"
/db_xref="GeneID:7283713"
CDS complement(81202..81978)
/locus_tag="Ddes_0062"
/inference="protein motif:PFAM:PF02576"
/note="PFAM: protein of unknown function DUF150;
KEGG: dvl:Dvul_2430 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478660.1"
/db_xref="GI:220903348"
/db_xref="InterPro:IPR003728"
/db_xref="GeneID:7283713"
/translation="MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDV
PTIPQRPGMPEGSEEPSSAITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLAL
ALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGP
RRVWRGTLVAVEDDAFVLAPVTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQK
PGKKPGKPQGKEVPKGGSGSTAPKKAAAKKKAGRTAAEND"
misc_feature complement(81358..81963)
/locus_tag="Ddes_0062"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature complement(81454..81942)
/locus_tag="Ddes_0062"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature complement(81358..81615)
/locus_tag="Ddes_0062"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature complement(order(81358..81372,81376..81381,81385..81393,
81448..81450,81469..81471,81487..81489,81493..81495,
81541..81543,81547..81549))
/locus_tag="Ddes_0062"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature complement(order(81379..81381,81457..81459,81463..81465))
/locus_tag="Ddes_0062"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 82479..84047
/locus_tag="Ddes_0063"
/db_xref="GeneID:7283714"
CDS 82479..84047
/locus_tag="Ddes_0063"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS sensor protein;
PFAM: chemotaxis sensory transducer;
KEGG: dvl:Dvul_1295 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="Pas/Pac sensor-containing methyl-accepting
chemotaxis sensory transducer"
/protein_id="YP_002478661.1"
/db_xref="GI:220903349"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:7283714"
/translation="MSLQRKIWVLGCIALAVATGLAWAAVLLGGMPAGTVWGAAAGGL
LVLLVLGFGLGQAYGRAIPALAQCLRGGAEGRGDMPACCSPQAVPGDLQKIYAAAYDM
AASLRRTDGVLHGILTGMPLPYLLVDENERATSTNQACLDMLEIDGPVKNCLGKTLAE
LFYNDASRDTAVGKSIRTGQYFHNLSVTIAGHKGRRIDVLANVFPVYDKQKNCLGGLC
LYVDMTALKEAEQMIKDKNERMRAAAQELDGAVQELAAISEGLVAGIGRSDNDAARAA
RLLTEAATAMNQMTATVREVAHNAADASTASAQTRDKAHEGAQVVSNVTQSIDEVHEV
SMALKSDMALLDRHARDITEIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVAD
EVRKLAEKTMTSTSDVGSAIGSIQQSTAKSMTSMDSAVTQVEQATAYAGKSGQALNAI
VGTVEDTVAQISAIAAASEQQSVASEQINRSIDEVNNVMAGTARSMAEARQETDRLVA
LIERLADLTARLQE"
sig_peptide 82479..82553
/locus_tag="Ddes_0063"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.959 at
residue 25"
misc_feature 82848..83153
/locus_tag="Ddes_0063"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature 83334..84041
/locus_tag="Ddes_0063"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 83337..83936
/locus_tag="Ddes_0063"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(83361..83366,83373..83378,83385..83387,83394..83399,
83403..83408,83415..83417,83424..83429,83436..83438,
83445..83450,83457..83462,83469..83471,83478..83483,
83487..83492,83502..83504,83508..83513,83520..83522,
83529..83534,83541..83546,83553..83555,83562..83564,
83571..83576,83583..83585,83595..83597,83604..83606,
83625..83627,83637..83639,83646..83648,83655..83660,
83667..83669,83676..83681,83688..83693,83697..83702,
83709..83714,83751..83756,83763..83765,83772..83777,
83784..83786,83793..83798,83802..83807,83814..83819,
83826..83828,83835..83840,83847..83849,83856..83861,
83865..83870,83877..83882,83886..83891,83898..83900,
83907..83912,83919..83921,83928..83933)
/locus_tag="Ddes_0063"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 83571..83672
/locus_tag="Ddes_0063"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(84087..85394)
/locus_tag="Ddes_0064"
/db_xref="GeneID:7283715"
CDS complement(84087..85394)
/locus_tag="Ddes_0064"
/inference="protein motif:TFAM:TIGR01084"
/note="TIGRFAM: A/G-specific adenine glycosylase;
PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD
family protein;
KEGG: dvl:Dvul_2698 A/G-specific adenine glycosylase"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_002478662.1"
/db_xref="GI:220903350"
/db_xref="InterPro:IPR000086"
/db_xref="InterPro:IPR000445"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR004036"
/db_xref="InterPro:IPR005760"
/db_xref="GeneID:7283715"
/translation="MPKKAIKFPTDPKTGKKSRTTPNPLPGLETAAAAQGCSGLPPRH
LPPEKHIPALQNALLDWFAVHQRALPWRNSYTPYEVWISEVMLQQTQMERGVRYFIRW
MERFPDIAALAAAHEEDVLRMWEGLGYYSRARHILAAARKIMAEHNGIFPRDPAAIRA
LPGVGPYTAGAIASIAFEKKLPCVDANVERVVSRIFDVDSPVKQEPAAGVIHQWALRL
VPEGKARAHNQAMMELGALVCRKKPCCASCPLGAFCISHHLGIEDQRPVPGKRATVTP
VNAVTGVLRRGEKIFVQKRPASGVWGNLWEFPGGRVEEGESPEQAVVREFMEETGFTV
NVAARHGIIRHGYTTYRLTLHCFGLDLAAPGKDCTPETCPAPPVLTAATQYRWASPQE
LEDLAMPAAHRKLADSLFSQPGQTAGASTMPRQGRLTDGTDTD"
misc_feature complement(84168..85256)
/locus_tag="Ddes_0064"
/note="A/G-specific DNA glycosylase [DNA replication,
recombination, and repair]; Region: MutY; COG1194"
/db_xref="CDD:31387"
misc_feature complement(84690..85163)
/locus_tag="Ddes_0064"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(order(84999..85001,85113..85115,85122..85130))
/locus_tag="Ddes_0064"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(84891..84914)
/locus_tag="Ddes_0064"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(84699..84701,84711..84713,84882..84884))
/locus_tag="Ddes_0064"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(84840..84842)
/locus_tag="Ddes_0064"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(84168..84566)
/locus_tag="Ddes_0064"
/note="The MutT pyrophosphohydrolase is a prototypical
Nudix hydrolase that catalyzes the hydrolysis of
nucleoside and deoxynucleoside triphosphates (NTPs and
dNTPs) by substitution at a beta-phosphorus to yield a
nucleotide monophosphate (NMP) and inorganic...; Region:
MutT_pyrophosphohydrolase; cd03425"
/db_xref="CDD:72883"
misc_feature complement(order(84189..84191,84252..84254,84339..84341,
84408..84413,84420..84422,84456..84458,84462..84467,
84558..84560,84564..84566))
/locus_tag="Ddes_0064"
/note="active site"
/db_xref="CDD:72883"
misc_feature complement(order(84189..84191,84339..84341,84345..84347,
84462..84467,84558..84560,84564..84566))
/locus_tag="Ddes_0064"
/note="8-oxo-dGMP binding site [chemical binding]; other
site"
/db_xref="CDD:72883"
misc_feature complement(84399..84467)
/locus_tag="Ddes_0064"
/note="nudix motif; other site"
/db_xref="CDD:72883"
misc_feature complement(order(84408..84413,84420..84422))
/locus_tag="Ddes_0064"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:72883"
gene 85516..86025
/locus_tag="Ddes_0065"
/db_xref="GeneID:7283716"
CDS 85516..86025
/locus_tag="Ddes_0065"
/inference="protein motif:PFAM:PF00160"
/note="PFAM: peptidyl-prolyl cis-trans isomerase
cyclophilin type;
KEGG: dvl:Dvul_2696 peptidylprolyl isomerase"
/codon_start=1
/transl_table=11
/product="cyclophilin type peptidyl-prolyl cis-trans
isomerase"
/protein_id="YP_002478663.1"
/db_xref="GI:220903351"
/db_xref="InterPro:IPR002130"
/db_xref="GeneID:7283716"
/translation="MADNPTVLLETTSGDILLELFPDKAPKTVANFLQYVDDGFYNNT
IFHRVIPGFMIQGGGLGARMDEKATREPVANEADNGVKNERGTIAMARTRDPHSATAQ
FFINLVDNDFLNHSAPTLDGWGYCAFGRVTEGMEVVEKIAKVKTKSMGMHENVPVDMV
LITGASRFE"
misc_feature 85534..86004
/locus_tag="Ddes_0065"
/note="peptidyl-prolyl cis-trans isomerase B (rotamase B);
Provisional; Region: PRK10791"
/db_xref="CDD:182734"
misc_feature 85537..86001
/locus_tag="Ddes_0065"
/note="cyclophilin_EcCYP_like: cyclophilin-type A-like
peptidylprolyl cis- trans isomerase (PPIase) domain
similar to the cytosolic E. coli cyclophilin A and
Streptomyces antibioticus SanCyp18. Compared to the
archetypal cyclophilin Human cyclophilin A, these...;
Region: cyclophilin_EcCYP_like; cd01920"
/db_xref="CDD:29391"
misc_feature order(85657..85659,85663..85665,85672..85677,85681..85683,
85786..85803,85825..85827,85849..85854,85888..85890)
/locus_tag="Ddes_0065"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29391"
gene 86356..86835
/locus_tag="Ddes_0066"
/db_xref="GeneID:7283717"
CDS 86356..86835
/locus_tag="Ddes_0066"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478664.1"
/db_xref="GI:220903352"
/db_xref="GeneID:7283717"
/translation="MSRDIINAVQAPYRHSWSLLTQFIDVCPENIWNGTRGGWPVWQQ
VAHTIAVLNFFTLGEKDAPLPAPCDQATLMLKVQGACAVGKDAMRDYAEAVRICVDAW
LDGLSDADLARLHAVLSQKIGMDVTYGAAVAMLASHTCYHIGSCDAALRDSGLPGVF"
misc_feature 86392..86787
/locus_tag="Ddes_0066"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
gene 87314..87829
/locus_tag="Ddes_0067"
/db_xref="GeneID:7283718"
CDS 87314..87829
/locus_tag="Ddes_0067"
/inference="protein motif:PFAM:PF04264"
/note="PFAM: YceI family protein;
KEGG: ote:Oter_2283 YceI family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478665.1"
/db_xref="GI:220903353"
/db_xref="InterPro:IPR007372"
/db_xref="GeneID:7283718"
/translation="MTTWKSDPDHSRLGFVVRHITITDIAGRFAEFTASAQIGKDDLS
DATFSMAARVASIDTDVAARDEHLRSADFFEAGTYPEITFASSHVRMDSKGEGKISGA
LTIHGVTKEVTFSIQASEVVTNPMNNAPTRAFKVWGSVKRSDFGLGTSIPALIVGEEV
HVAADVECSPV"
misc_feature 87320..87814
/locus_tag="Ddes_0067"
/note="YceI-like domain; Region: YceI; pfam04264"
/db_xref="CDD:202950"
gene complement(88910..89551)
/locus_tag="Ddes_0068"
/db_xref="GeneID:7283719"
CDS complement(88910..89551)
/locus_tag="Ddes_0068"
/inference="protein motif:PFAM:PF00596"
/note="PFAM: class II aldolase/adducin family protein;
KEGG: dvl:Dvul_2810 class II aldolase/adducin family
protein"
/codon_start=1
/transl_table=11
/product="class II aldolase/adducin family protein"
/protein_id="YP_002478666.1"
/db_xref="GI:220903354"
/db_xref="InterPro:IPR001303"
/db_xref="GeneID:7283719"
/translation="MTAPGHCPDKASLSASAGELTPHMVENLRSVCRDAWRQGLLSGC
NGNASLRLPTPHSDTVCLTRSGAAKGRLTAEDCCLVSLADGATLHGGPASTESGMHLA
VYRALPDCAAILHTHPRRLLALSLRLGGTMEDFLNLPLFEAEVWRARLGVAPALPPGT
PELAQAVAEAARTSPAVWMAGHGLCSTGASLAEALCLTEELEHLAAIQLLSMP"
misc_feature complement(88988..89470)
/locus_tag="Ddes_0068"
/note="Class II Aldolase and Adducin N-terminal domain;
Region: Aldolase_II; smart01007"
/db_xref="CDD:198075"
misc_feature complement(order(89009..89011,89120..89125,89129..89131,
89171..89179,89192..89197,89201..89203,89339..89344,
89348..89350,89426..89428,89450..89452,89462..89464))
/locus_tag="Ddes_0068"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature complement(order(89006..89008,89201..89203,89207..89209,
89264..89272,89354..89359,89411..89413))
/locus_tag="Ddes_0068"
/note="active site"
/db_xref="CDD:29521"
misc_feature complement(order(89006..89008,89201..89203,89207..89209))
/locus_tag="Ddes_0068"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene complement(89548..90456)
/locus_tag="Ddes_0069"
/db_xref="GeneID:7283720"
CDS complement(89548..90456)
/locus_tag="Ddes_0069"
/inference="protein motif:PFAM:PF00535"
/note="PFAM: glycosyl transferase family 2;
KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family
protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_002478667.1"
/db_xref="GI:220903355"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:7283720"
/translation="MRAHIGVVTWNRLDLTRRCLTSLLAQTPPGYSLTVTDNGSTDGT
PRYLKELADAHPHMRLHLLKRNMGVAVASNLAWGDAGAADCFVKLDNDVEICDPHWLE
RLTGMLAADGRVGMAGYRLCPWHEGTPLRLADSTPALSVACCNGACACIPRAVHEKLG
FWNESYGRYGYEDLEYSWRARQAGYLLAYALQEDAVRHLGAEPEQRDPNMENGKLSSR
TAALSGTKAYLMYLLLFEKGIIPLKVGRKYLPVEGPDGTVFSLNPEHKALQRLLTRLV
QTVETSQTGDISCLDLSAWQKKGRLS"
misc_feature complement(89860..90456)
/locus_tag="Ddes_0069"
/note="Glycosyltransferase like family 2; Region:
Glyco_tranf_2_3; pfam13641"
/db_xref="CDD:205818"
misc_feature complement(89857..90444)
/locus_tag="Ddes_0069"
/note="Subfamily of Glycosyltransferase Family GT2 of
unknown function; Region: GT_2_like_c; cd04186"
/db_xref="CDD:133029"
misc_feature complement(order(90181..90186,90343..90345))
/locus_tag="Ddes_0069"
/note="Probable Catalytic site; other site"
/db_xref="CDD:133029"
misc_feature complement(order(89932..89934,89938..89940,90181..90183))
/locus_tag="Ddes_0069"
/note="metal-binding site"
/db_xref="CDD:133029"
gene complement(90458..91528)
/locus_tag="Ddes_0070"
/db_xref="GeneID:7283721"
CDS complement(90458..91528)
/locus_tag="Ddes_0070"
/EC_number="2.7.4.16"
/inference="protein motif:TFAM:TIGR01379"
/note="KEGG: dvu:DVU0157 thiamin-monophosphate kinase;
TIGRFAM: thiamine-monophosphate kinase;
PFAM: AIR synthase related protein"
/codon_start=1
/transl_table=11
/product="thiamine-monophosphate kinase"
/protein_id="YP_002478668.1"
/db_xref="GI:220903356"
/db_xref="InterPro:IPR000728"
/db_xref="InterPro:IPR006283"
/db_xref="GeneID:7283721"
/translation="MVPSPVPGGSAATSAVPLSEDRILACLAGYFPQTHPSLLLGRGD
DCAVLKAEKPLCVSSDLFLEDIHFRRNYFTPEDTGYKALAVNVSDLAGCGARPLAFTL
CLGLPAWVDMDWLNRFFSGMAELAGKHRIALAGGDLSRSTSLHISITVWGEAAEPGSF
LARGGSMPGDILFLVGPLGLARAGLALLEEQGREALHHWPAVCAAHLRPVPQVDAGLM
LSRAGYNARPPALMDLSDGILRDLPRLLGLSGELSATCPEKCTGLGAEIVLPRGRLHP
EVLHYAAATGKNPVYEALLGGEDYALLGSCAPDMLPPLHAAIPGLFSIGVVTSGGGIV
CNNEPLEKLGGGFDHFDAGQDA"
misc_feature complement(90479..91441)
/locus_tag="Ddes_0070"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:180226"
misc_feature complement(90602..91438)
/locus_tag="Ddes_0070"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature complement(order(90821..90826,90830..90832,91040..91042,
91118..91126,91172..91174,91223..91225,91262..91264,
91394..91402))
/locus_tag="Ddes_0070"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature complement(order(91082..91084,91088..91090,91109..91120,
91127..91129,91172..91174,91340..91342,91346..91354,
91391..91393))
/locus_tag="Ddes_0070"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene complement(91530..93836)
/locus_tag="Ddes_0071"
/db_xref="GeneID:7283722"
CDS complement(91530..93836)
/locus_tag="Ddes_0071"
/inference="protein motif:PFAM:PF00580"
/note="PFAM: UvrD/REP helicase;
KEGG: dvl:Dvul_2812 UvrD/REP helicase"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_002478669.1"
/db_xref="GI:220903357"
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
/db_xref="GeneID:7283722"
/translation="MIDYAQALNEAQYEAATSGDGPVLVVAGAGSGKTRTIVYRLAWL
AENGVSPESMLLLTFTRKAAQEMLHRAGLLLDHGLSGVQGGTFHAFAFSVLRRWKPAW
LADRPFTVMDAADITSAVKHCRDDLKLGKGDKSFPKTQTVVGLLSKARNKELPLDEVL
RREAFHLLPHAESLSRLGEAYNTYRREKGLMDYDDLLFELEALLRQNEVAAASLRQRF
SHILVDEYQDTNLVQARIVRLLAGPEDAPPGNVMAVGDEAQSIYAFRGANVRNILDFP
KLFPGARVIRLEENYRSTRPVLEVANSLLAHAAESFRKKLFTRKEGGEPVRLVTPLSD
ASQARLVVRRIEELLRDHMPHEIAVLFRAGFHSYNLEMALNQAGIGFRKYGGLRYTEA
AHVKDVMAYARLLLNPLDLPAFARVAAQHSGIGPKTVEKLYNVIRSGDAAATEKALAR
HTGFLEDVRFINDLRTRPMAPSSTLAAVLEHYRPRLESLYPEDWPRRQQGLEEIIQMA
SGYVHLDLFLADLALESPEEDENDAEGKITLSTVHSAKGLEWNAVCIIDLVEDRFPSR
HALARPEDFEEERRLMYVACTRARQCLDLYAPASLYNRAERGSQHVNQSPFVRELAPG
LVEEWVEGFGGGISRRAAGGFGSPGAFQPRPATRPQGMQPPQEHAAYDDCQLPPEHAA
GGRPVAAGGPAGNGGYGGYSRPEVPPPAATSSQGGDTPGQGHLCYCQHRIFGRGKIIR
HISPEKVQVNFPGFGLKIILSEYLLMEN"
misc_feature complement(91938..93815)
/locus_tag="Ddes_0071"
/note="Superfamily I DNA and RNA helicases [DNA
replication, recombination, and repair]; Region: UvrD;
COG0210"
/db_xref="CDD:30559"
misc_feature complement(93564..93797)
/locus_tag="Ddes_0071"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(92067..>92237)
/locus_tag="Ddes_0071"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 94442..94975
/locus_tag="Ddes_0072"
/db_xref="GeneID:7283723"
CDS 94442..94975
/locus_tag="Ddes_0072"
/inference="similar to AA sequence:KEGG:DVU3281"
/note="KEGG: dvu:DVU3281 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478670.1"
/db_xref="GI:220903358"
/db_xref="GeneID:7283723"
/translation="MPEEQSQFQSAVASVLESVMFENWLRFYFISEKPESASDEGETP
LFMAVPVKGMERIAELYPHLLPLADEMNGKEVTFEMSQRAICNYIAAYVDGKLIARDS
AAMIFNSSTFQVQMQLFNTWVQMHEDQLDRGFTEFGAWRKLFDEWRQSPGARELAEKM
TLSLHSASAGSDKDTVQ"
gene 95095..95772
/locus_tag="Ddes_0073"
/db_xref="GeneID:7283724"
CDS 95095..95772
/locus_tag="Ddes_0073"
/inference="protein motif:PFAM:PF06962"
/note="PFAM: putative rRNA methylase;
KEGG: gme:Gmet_2819 putative rRNA methylase"
/codon_start=1
/transl_table=11
/product="putative rRNA methylase"
/protein_id="YP_002478671.1"
/db_xref="GI:220903359"
/db_xref="InterPro:IPR010719"
/db_xref="GeneID:7283724"
/translation="MRRLSLLEHLAHAALERALVTCAADASSVPHGGQGAQAAVGAAP
GLLLVDATAGNGHDSLFLLGAAPRNALLLAMDVQAQAVAATGALLAAHGFAHAARVLH
TGHECLADVLAALAPEDRQRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEALA
PGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLLVERL
PVRKNRA"
misc_feature <95398..95745
/locus_tag="Ddes_0073"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene 96075..96959
/locus_tag="Ddes_0074"
/db_xref="GeneID:7283725"
CDS 96075..96959
/locus_tag="Ddes_0074"
/inference="protein motif:TFAM:TIGR01230"
/note="TIGRFAM: agmatinase;
PFAM: Arginase/agmatinase/formiminoglutamase;
KEGG: dvu:DVU0421 agmatinase, putative"
/codon_start=1
/transl_table=11
/product="agmatinase"
/protein_id="YP_002478672.1"
/db_xref="GI:220903360"
/db_xref="InterPro:IPR005925"
/db_xref="InterPro:IPR006035"
/db_xref="GeneID:7283725"
/translation="MQHFLASEYSPVLPEQAGFHIIPVPLEQSVSYGAGTAGGPAALL
EASQQLEAWECGHAPGETGFYTAPPVDCGGPVEKVLDRIEAATARAISCAALPVLLGG
EHTVTLGALRALAKEAQRSREPFGIVQFDAHADLRSSYEGSPYSHACVMHRAVADLGL
PLVQFAVRDFCREEAEVRKAHNVTHYDAYFMARVGLPEQPLPEDFPRRIYITFDVDAF
DASLMPATGTPSPGGISWREAHFILERCVAGRRVIGLDVVELAPIQGLHHCNFTAAKL
THLLMGLAHAANTGPDGA"
misc_feature 96129..96917
/locus_tag="Ddes_0074"
/note="Agmatinase and related proteins; Region:
Agmatinase-like_2; cd11593"
/db_xref="CDD:212539"
misc_feature order(96384..96386,96465..96467,96471..96479,96513..96518,
96714..96716,96720..96722,96849..96851)
/locus_tag="Ddes_0074"
/note="putative active site [active]"
/db_xref="CDD:212539"
misc_feature order(96384..96386,96465..96467,96471..96473,96477..96479,
96714..96716,96720..96722)
/locus_tag="Ddes_0074"
/note="Mn binding site [ion binding]; other site"
/db_xref="CDD:212539"
gene 97190..98023
/locus_tag="Ddes_0075"
/db_xref="GeneID:7283726"
CDS 97190..98023
/locus_tag="Ddes_0075"
/EC_number="2.1.2.11"
/inference="protein motif:TFAM:TIGR00222"
/note="KEGG: efa:EF1860 3-methyl-2-oxobutanoate
hydroxymethyltransferase;
TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase;
PFAM: Ketopantoate hydroxymethyltransferase"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_002478673.1"
/db_xref="GI:220903361"
/db_xref="InterPro:IPR003700"
/db_xref="GeneID:7283726"
/translation="MKNTVVTFRAAKGQDKLVVLTAYDYSTARVMDAAGVNALLVGDS
LGMVMLGHEDTLGVSMDDMVRHCGAVARGAEQALVICDMPYMSYHTGIDEAVRNAGRL
VTEGRAQAVKLEGGAEFCDVVRAIVRASIPVMGHLGLTPQSVNAMGGFKMQGKTPAAA
QKLLDDARALQEAGAFALVLECVPAPLAARITKELAIPVIGIGAGADCDGQVLVWQDM
AGLNARPLPRFVKYFGSVDMALRDAIEAYTREVRVGAFPGEEHCYPLPEGMEKALKKL
K"
misc_feature 97202..97960
/locus_tag="Ddes_0075"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature order(97202..97207,97259..97270,97277..97279,97322..97324,
97328..97345,97355..97360,97373..97375,97382..97387,
97394..97396,97403..97405,97442..97447,97475..97477,
97487..97489,97496..97501,97514..97516,97568..97585,
97613..97618,97622..97633,97715..97717,97835..97837,
97844..97849,97889..97891,97898..97912)
/locus_tag="Ddes_0075"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature order(97250..97252,97307..97309,97313..97321,97433..97435,
97523..97525,97595..97597,97610..97612,97730..97732,
97823..97825,97829..97831)
/locus_tag="Ddes_0075"
/note="active site"
/db_xref="CDD:119342"
misc_feature order(97316..97318,97433..97435,97523..97525)
/locus_tag="Ddes_0075"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene complement(98174..99106)
/locus_tag="Ddes_0076"
/db_xref="GeneID:7283727"
CDS complement(98174..99106)
/locus_tag="Ddes_0076"
/inference="protein motif:TFAM:TIGR01413"
/note="TIGRFAM: Dyp-type peroxidase family;
PFAM: Dyp-type peroxidase;
KEGG: bth:BT_1219 hypothetical protein"
/codon_start=1
/transl_table=11
/product="Dyp-type peroxidase family protein"
/protein_id="YP_002478674.1"
/db_xref="GI:220903362"
/db_xref="InterPro:IPR006314"
/db_xref="GeneID:7283727"
/translation="MKPQDVTNTPGEHAIFMVFGLQDEAGAAAKVKDLCADFSAVARS
MRTRLPDSAISCIMGFGAEAWNRLFPGRGKPGELEVFKEIKGNRHTAVSTPGDIFFHI
RAARLDVCLEAASIISAKLQGAVYAIDEVQGFRYYDGRSIIGFVDGTENPEDDARLTA
ATIGDEDAAFKGGSYAFVQKYLHDMDAWNALSTEEQEKAIGRHKFNDVELSDDEKPEN
AHNAVTNIEDADGNELKIVRANMPFANPAKSEFGTYFIGYAGTFSTTRKMLENMFIGE
PVGNTDRLLDFSTAATGTLFFIPPLEMLEALGES"
misc_feature complement(98195..99067)
/locus_tag="Ddes_0076"
/note="Dyp-type peroxidase family; Region: Dyp_perox;
cl01067"
/db_xref="CDD:194026"
gene complement(99214..102474)
/locus_tag="Ddes_0077"
/db_xref="GeneID:7283728"
CDS complement(99214..102474)
/locus_tag="Ddes_0077"
/inference="protein motif:PFAM:PF00270"
/note="PFAM: helicase domain protein; DEAD/DEAH box
helicase domain protein; Helicase superfamily 1 and 2
ATP-binding;
SMART: DEAD-like helicases;
KEGG: dvu:DVU0256 DEAD-box ATP dependent DNA helicase"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_002478675.1"
/db_xref="GI:220903363"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:7283728"
/translation="MSVGSYIAALLASEKLGGQVTCHRLLPASEARYAPTRLPWPAAI
SRTLEQRGIPGLYSHQALATDHIRAGHSIVAATPTASGKSLIYNLPVLERHLRDPDAR
ALYLFPLKALAQDQLAAFNALTAAWPKDARPAAALYDGDTTDHFRRKIRRDPPAVLIS
NPEMLHLGILPHHEQWAAFLAGLTHVVVDEAHTYRGVFGAHMAQVFRRLNRLAGRYGA
NPVYVLCTATVGNPGELGAALTGAAWPGTGDSRHPESPVPSGTDAAATQTVEAGGFFP
QQPAALPPPVVIDRSGAPQGPRHFVFLNPEQSPATAAIDLLKAALARNLRTIVYCRSR
RMTELISLWAGQSGSFSSRISAYRAGFLPEERRSIESRMASGELLAVVSTSALELGID
IGGLDVCILVGYPGTVMATLQRGGRVGRAQQESAVIVVAGEDALDQYFARNPDDFFNR
PPEKAVVNPDNEVILARHLECAAAEMPLRLGEAMLASPAALDAARALNAQGLLLQSAE
GGQLMASRKRPQRHVDLRGTGQTFSIEDGQGHIIGSVDGFRAWRETHPGAVYLHRGRS
YIIEEIDSGRARIVAKEARVSWFTRTRGQKSTDILEEAERTSLGRVLVCRGRLRIIDT
ITGYEKRSTTGNRLLTIAPLDAPPQVFETEGLWFVIPDNIRAGLEENFMHFMGGIHAL
EHAAIGMLPLLIMADRNDFGGISTPMHIQLGLPAVFIYDGLPGGAGLTRQAFSDARAL
LEATCKTVASCPCEDGCPSCVHSPKCGSGNRPISKLAALELLRRLLAPGSEGDHLLQT
LVTSPPPPRPELEQKLDFFAANGAAAAPVPQTSGTAEPAGTDAHAAAPRHAGKDTGML
PAAAEGTSPASGITAPRKRIRQHDAACAPSAVRSEVNSMTGLLPHTPIAPPAHFLVFD
VETRRAAAEVGGWHKAGDMGVSVAVAYDSRADDFFSYSQDELPALFERMRAAGLVVGF
NSLRFDYAVLTPFAPFDLRGLPSLDLLQRVKERLSYRISLDNLGQATLNEPKSADGLQ
ALRWWKEGKVEETTAYCRKDVDLTRRLYLYGLEHGHLLFTNKAGGRVRVPVNFSPL"
misc_feature complement(100150..102399)
/locus_tag="Ddes_0077"
/note="helicase/secretion neighborhood putative DEAH-box
helicase; Region: DECH_helic; TIGR03817"
/db_xref="CDD:163529"
misc_feature complement(101791..102264)
/locus_tag="Ddes_0077"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(102223..102237)
/locus_tag="Ddes_0077"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(101899..101910)
/locus_tag="Ddes_0077"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(101185..101574)
/locus_tag="Ddes_0077"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(101317..101325,101398..101403,
101470..101481))
/locus_tag="Ddes_0077"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(101215..101217,101224..101226,
101236..101238,101299..101301))
/locus_tag="Ddes_0077"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(100192..100434)
/locus_tag="Ddes_0077"
/note="Domain of unknown function (DUF1998); Region:
DUF1998; pfam09369"
/db_xref="CDD:204215"
misc_feature complement(99307..99738)
/locus_tag="Ddes_0077"
/note="DnaQ-like (or DEDD) 3'-5' exonuclease domain
superfamily; Region: DnaQ_like_exo; cl10012"
/db_xref="CDD:211457"
gene complement(102489..103223)
/locus_tag="Ddes_0078"
/db_xref="GeneID:7283729"
CDS complement(102489..103223)
/locus_tag="Ddes_0078"
/inference="protein motif:PFAM:PF00132"
/note="PFAM: transferase hexapeptide repeat containing
protein;
KEGG: dvl:Dvul_2637 hexapaptide repeat-containing
transferase"
/codon_start=1
/transl_table=11
/product="transferase hexapeptide repeat containing
protein"
/protein_id="YP_002478676.1"
/db_xref="GI:220903364"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:7283729"
/translation="MNMLRKALELGLTPANIISYLCLQAMTRWGRFWGTLRLRCKAVF
VGVPVGQGVSAHGPVGLMRWPGSHISIGAGASLISSWRRATAAALASPVRLRTFGPGA
RIDVGPGAQLSGTSITARSTTISIGRQALLAPNCIIVDSDFHAHWPPEARATEPGMEG
DRPVTIGDYAWIGLNCIILKGVTIGEGAIIGAGSVVTRDVPPHCLAAGSPARVLRHLA
PGEDRTAAADRTVPAEDKSFPETARA"
misc_feature complement(102579..>102836)
/locus_tag="Ddes_0078"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature complement(102582..>102833)
/locus_tag="Ddes_0078"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature complement(order(102597..102599,102645..102647,
102702..102704,102711..102713,102717..102719,
102786..102794,102813..102815,102831..102833))
/locus_tag="Ddes_0078"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(102582..102584,102594..102596,
102600..102605,102609..102611,102630..102635,
102648..102653,102657..102659,102687..102689,
102702..102707,102711..102713,102786..102788,
102792..102794))
/locus_tag="Ddes_0078"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(102594..102596,102600..102605,
102630..102635,102648..102653,102687..102689,
102702..102707,102711..102713,102786..102788,
102792..102794))
/locus_tag="Ddes_0078"
/note="active site"
/db_xref="CDD:100053"
gene complement(103413..103958)
/locus_tag="Ddes_0079"
/db_xref="GeneID:7283730"
CDS complement(103413..103958)
/locus_tag="Ddes_0079"
/EC_number="1.6.5.2"
/inference="protein motif:PRIAM:1.6.5.2"
/note="PFAM: NADPH-dependent FMN reductase;
KEGG: dar:Daro_2797 NAD(P)H dehydrogenase
(quinone):NADPH-dependent FMN reductase"
/codon_start=1
/transl_table=11
/product="NAD(P)H dehydrogenase (quinone)"
/protein_id="YP_002478677.1"
/db_xref="GI:220903365"
/db_xref="InterPro:IPR005025"
/db_xref="GeneID:7283730"
/translation="MSDLTFIGISGSLRRASRNTGLLRCCAAHLPEGVRMEMADISGL
PFYNQDIEKPQAVKDLVARVTAADALVLACPEYNYSLAPALKNALDWLSREPDLAPLT
GKAACIVGAGGGMGTSRSQYHLRQVCVYLNLRVLNRPELFSNAFSACFDDNGDVQDDG
LTRQVTDVMQALAQWTRQLRK"
misc_feature complement(103416..103949)
/locus_tag="Ddes_0079"
/note="Predicted flavoprotein [General function prediction
only]; Region: COG0431"
/db_xref="CDD:30780"
gene complement(104183..104602)
/locus_tag="Ddes_0080"
/db_xref="GeneID:7283731"
CDS complement(104183..104602)
/locus_tag="Ddes_0080"
/inference="similar to AA sequence:KEGG:STH3036"
/note="KEGG: sth:STH3036 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478678.1"
/db_xref="GI:220903366"
/db_xref="GeneID:7283731"
/translation="MKKKLEPGLSGTLEITVSEAMLACNVGSGLVDVFSTAMMIAWME
ATAVATVQEILDHQGLGMTTVGTKVDISHMAATPCGMKVIFTAELVGMSSNGKGLTFK
VSARDEVGLIGEGLHERVVVHKEKFESRTRDRKLCGC"
misc_feature complement(104198..104590)
/locus_tag="Ddes_0080"
/note="Predicted thioesterase [General function prediction
only]; Region: COG5496"
/db_xref="CDD:35055"
gene complement(104886..106469)
/locus_tag="Ddes_0081"
/db_xref="GeneID:7283732"
CDS complement(104886..106469)
/locus_tag="Ddes_0081"
/EC_number="1.7.2.2"
/inference="protein motif:PRIAM:1.7.2.2"
/note="PFAM: cytochrome c552;
KEGG: dvl:Dvul_2333 nitrite reductase (cytochrome;
ammonia-forming)"
/codon_start=1
/transl_table=11
/product="Nitrite reductase"
/protein_id="YP_002478679.1"
/db_xref="GI:220903367"
/db_xref="InterPro:IPR003321"
/db_xref="InterPro:IPR011031"
/db_xref="GeneID:7283732"
/translation="MNKRIVTTALALATLLGVALLSGCQDVSTELKAPKYKTGIAETE
TKMSAFKGQFPQQYASYMKNNEDRIMTDYKGSVPYHKNDNVNPLPKGFKHAQPYLKNL
WLGYPFMYEYNETRGHTYAIDDFLNIDRINRFAADGKGNLPATCWNCKTPKMMEWVSQ
YGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATMELRLYSEPLKDWLKRSGKDWQ
KMSRNEKRTLVCAQCHVEYYFTHKDNGPAAKPVFPWDNGFNPEDMYQYYKGHGAKGPD
GKPGPFVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYVREDGKKISS
HWMTSPMKDPEMRACRQCHADKTGEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVRL
ANAYEGHRAANYEALMAEAREMVRKGQLFWDYVSAENSVGFHNPAKALDTLMTSMECS
QKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRLLPALPK
AEQVWEGQDRLTSQAGQDK"
sig_peptide complement(106398..106469)
/locus_tag="Ddes_0081"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.592 at
residue 24"
misc_feature complement(105111..106322)
/locus_tag="Ddes_0081"
/note="Cytochrome c552; Region: Cytochrom_C552; pfam02335"
/db_xref="CDD:190282"
gene complement(106462..106929)
/locus_tag="Ddes_0082"
/db_xref="GeneID:7283733"
CDS complement(106462..106929)
/locus_tag="Ddes_0082"
/inference="similar to AA sequence:KEGG:Dvul_2334"
/note="KEGG: dvl:Dvul_2334 NapC/NirT cytochrome c family
protein"
/codon_start=1
/transl_table=11
/product="NapC/NirT cytochrome c family protein"
/protein_id="YP_002478680.1"
/db_xref="GI:220903368"
/db_xref="InterPro:IPR011031"
/db_xref="GeneID:7283733"
/translation="MGTPRNGPWLKWLLGGVAAGVVLMGVLAYAMTTTDQRPFCASCH
IMQEAAVTQKMGTHANLACNDCHAPHNLLVKLPFKAQEGLRDVVGNIMGHDIPRPLSL
RTRDVVNANCKACHTQTNINVASMDAKPYCVDCHKGVAHMRMKPISTRTVAYE"
sig_peptide complement(106837..106929)
/locus_tag="Ddes_0082"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.985 at
residue 31"
misc_feature complement(106507..>106815)
/locus_tag="Ddes_0082"
/note="cytochrome c nitrate reductase, small subunit;
Region: cytochr_NrfH; TIGR03153"
/db_xref="CDD:188289"
gene 107283..109907
/locus_tag="Ddes_0083"
/db_xref="GeneID:7283734"
CDS 107283..109907
/locus_tag="Ddes_0083"
/EC_number="2.7.13.3"
/inference="protein motif:PRIAM:2.7.13.3"
/note="PFAM: response regulator receiver; ATP-binding
region ATPase domain protein; histidine kinase A domain
protein; Hpt domain protein;
KEGG: dvl:Dvul_2335 multi-sensor hybrid histidine kinase"
/codon_start=1
/transl_table=11
/product="Hpt sensor hybrid histidine kinase"
/protein_id="YP_002478681.1"
/db_xref="GI:220903369"
/db_xref="InterPro:IPR000408"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="GeneID:7283734"
/translation="MVSLYNKKNRSAIWLPLLACFLWLVFTTGLYRQASRVDEAHRLE
LEHTRLSTVARQLMDARNWNAAHGGVYVLESEYGKPNLWLPEGERTVTTGDGRTLVLM
NPAYMSRQLAERNSEPGIEISVISNMPLRPENMADTWENDALSQCTAGAREIFSAPQP
GSHGKLRLLSVLVAQQSCLRCHVSRKVGEVLGGISVSQDGEAYVHNAALQQRNMRMLY
ALLALTGVLAVGGLTLNLTRRRWLAEEASRMKSAFMARLSHDMRTPLTAILGMSELLQ
QQNVSERDRKKALRYLTQAGSALLEMVRDITDHATLEQGVLHLRTAPFSLRACLADCV
ALYSPVAEAKGLDIDLDVDSGLPDAVAGDSFRLRQALGNLVSNAVKFTDMGRVRICVE
PGPVQGRKKGEDGSARLCLRILVQDTGPGLREEDAERIFESFQRGSDASGAPGTGLGL
YIARTIARRMGGDVSVVSSPGSGACFTLEVCLHLPGDGLGPESGSGPGLPPDGENRAG
AVGLPPGLASGAAAAPYTESVPQYSDSAAGLAASGGGSHTAGISCTACSPDKQPCPGS
LAKDHGSGPAKRPEAPCFEGCRILVAEDNEANRYIMEHMLKAEGARVGMAKDGSAALA
ALCENPWDMVILDSRMPGVSGLDVLRAVREGRTCAPAEQRTVIYTAALNAEDRRICED
LGADRILLKPLTFSGLRSELAALLFDGQKAARAAAAPKQGGEAGGSLSEPASAPAEIA
PAVWNRPEALAALDDDEDLLRRLARVLCEDLRSRETHMAAAQNAGDSATLRRLAHAVK
NSAGAMRLDLLRARAGEAERSEDSTLPASVERMRHAMREALLLLEAEPGCMQSQEVSV
HSAGAALCSGAASQKGEC"
sig_peptide 107283..107387
/locus_tag="Ddes_0083"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.924) with cleavage site probability 0.757 at
residue 35"
misc_feature 107331..107873
/locus_tag="Ddes_0083"
/note="Protein of unknown function (DUF3365); Region:
DUF3365; pfam11845"
/db_xref="CDD:204759"
misc_feature 108021..108206
/locus_tag="Ddes_0083"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(108039..108041,108051..108053,108063..108065,
108072..108074,108084..108086,108093..108095,
108144..108146,108156..108158,108165..108167,
108177..108179,108186..108188,108198..108200)
/locus_tag="Ddes_0083"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 108057..108059
/locus_tag="Ddes_0083"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 108381..108722
/locus_tag="Ddes_0083"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(108399..108401,108411..108413,108420..108422,
108525..108527,108531..108533,108537..108539,
108543..108548,108621..108632,108678..108680,
108684..108686,108699..108704,108708..108710)
/locus_tag="Ddes_0083"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 108411..108413
/locus_tag="Ddes_0083"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(108537..108539,108543..108545,108621..108623,
108627..108629)
/locus_tag="Ddes_0083"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 109047..109388
/locus_tag="Ddes_0083"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 109050..109400
/locus_tag="Ddes_0083"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(109059..109064,109191..109193,109215..109217,
109287..109289,109344..109346,109353..109358)
/locus_tag="Ddes_0083"
/note="active site"
/db_xref="CDD:29071"
misc_feature 109191..109193
/locus_tag="Ddes_0083"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(109200..109205,109209..109217)
/locus_tag="Ddes_0083"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 109353..109361
/locus_tag="Ddes_0083"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 109907..111439
/locus_tag="Ddes_0084"
/db_xref="GeneID:7283735"
CDS 109907..111439
/locus_tag="Ddes_0084"
/inference="protein motif:PFAM:PF00158"
/note="PFAM: response regulator receiver; sigma-54 factor
interaction domain-containing protein; ATPase associated
with various cellular activities AAA_5;
SMART: AAA ATPase;
KEGG: dvl:Dvul_2336 two component, sigma54 specific, Fis
family transcriptional regulator"
/codon_start=1
/transl_table=11
/product="putative Fis family two component sigma-54
specific transcriptional regulator"
/protein_id="YP_002478682.1"
/db_xref="GI:220903370"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:7283735"
/translation="MARILVVDDEALMRTMAEVVCTRMGHEVLLAESVSQGLELGRQG
VDVVLLDVWLPDGNGLEWQGDFAHLPGMPDVVIITGHGDGDAAEAALRSGAWEFLTKP
LKVRDIEQCLRHVLTFRENRVPGPESLLVDSGHVLGTGMGMSRALKLLAQAAQSEVNV
LLLGETGVGKEVFAKALYRNSARAARPFVTVDCASLPDNLVESHLFGHSRGAFTGADR
AREGLLLSANKGTLFLDEVGDLPQTIQGAFLRALELRRFRPVGDVREVSSDFRLVAAT
NRDIESMAREGTFRADLLYRLQGMTIVIPPLRERRDEIPALTRQAASRFCLHNDLPPK
AVSDAMLDVLMEYSWPGNVRELIHSVERACLAAGQGDELLPAHLPTRMRVDEARRRMG
RGPDSGIADVAGGGQAAACGFSGALYGAGSSASFGQPAVGEGASGRHAGGSAASVLHP
GLPPVAAGDDLPDLRQWKARAEEVYVRSIWGASNGDARTAAGMAGVSRGHWYELMKKH
GL"
misc_feature 109916..110245
/locus_tag="Ddes_0084"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 109919..110254
/locus_tag="Ddes_0084"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(109928..109933,110060..110062,110081..110083,
110141..110143,110198..110200,110207..110212)
/locus_tag="Ddes_0084"
/note="active site"
/db_xref="CDD:29071"
misc_feature 110060..110062
/locus_tag="Ddes_0084"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(110066..110071,110075..110083)
/locus_tag="Ddes_0084"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 110207..110215
/locus_tag="Ddes_0084"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 110330..110824
/locus_tag="Ddes_0084"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 110381..110782
/locus_tag="Ddes_0084"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature 110396..110419
/locus_tag="Ddes_0084"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(110399..110422,110609..110611,110735..110737)
/locus_tag="Ddes_0084"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 110597..110614
/locus_tag="Ddes_0084"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 110792..110794
/locus_tag="Ddes_0084"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 111867..112124
/locus_tag="Ddes_0085"
/db_xref="GeneID:7283736"
CDS 111867..112124
/locus_tag="Ddes_0085"
/inference="similar to AA sequence:KEGG:Dvul_2341"
/note="KEGG: dvl:Dvul_2341 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478683.1"
/db_xref="GI:220903371"
/db_xref="GeneID:7283736"
/translation="MNKNSITIKGYVTAMPRSVDARQARVAVVQDDVEYRIVPRGAGV
DLDDAVSLPVEVFGLLEEADGVSYLVVRGYTVLEDDSWLEE"
gene complement(112349..114148)
/locus_tag="Ddes_0086"
/db_xref="GeneID:7283737"
CDS complement(112349..114148)
/locus_tag="Ddes_0086"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
chemotaxis sensory transducer; Cache type 2 domain
protein;
KEGG: dvu:DVU0344 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="Cache sensor-containing methyl-accepting
chemotaxis sensory transducer"
/protein_id="YP_002478684.1"
/db_xref="GI:220903372"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="InterPro:IPR013163"
/db_xref="GeneID:7283737"
/translation="MLRNISIAQRITCFVTLMIAMVIAMAVLSFFMTSNVIDEGTSVA
RNQLLDSQRARIKDVTQASALGLAAMTRGLPPQEQLGVIADYIEKSRFEDDASGYFYV
YEGTVNVAHPTQKQLVGKDLSGTADKQGVHYVVELHKAAAKGGGFVDFVFPKPGAGDV
FKLGYAEKIEGTPYWIGTGVYIDNVDREENRLHSTMGSLLTRTLGTYGGGFLAALLLI
VVPLSYRLATSITRPLAGITGQARAVAAGNLDVTITPDGKDEVALLERALRDMVDKLK
KLINETAEKSRQADEAANEARVAQSRAELAGQDAQAKAAAMLVAADRLEQVAHAVSTA
STQLSTQIEQSDRGAMDSAQRLTEAAAAINQMNATVQSVAQNATQASASSHDTREKAV
AGAHIVEQAVRSISQVHEVSQRLTENMGQLNDQAQAISKIMNVISDIADQTNLLALNA
AIEAARAGDAGRGFAVVADEVRKLAEKTMASTHDVGAAITSIQASTAKSMTAMETATE
QVSQATEFAHQSGQALEEIVSTVEATADQVNAIAAASEQQSVASEEINRSISTVNDVV
QQTAEAMHEAALAVSDLARQAQNLSSLIGDMKK"
sig_peptide complement(114068..114148)
/locus_tag="Ddes_0086"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.990) with cleavage site probability 0.834 at
residue 27"
misc_feature complement(113747..114007)
/locus_tag="Ddes_0086"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:198117"
misc_feature complement(113318..113461)
/locus_tag="Ddes_0086"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(113324..113329,113336..113341,
113345..113350,113357..113362,113366..113371,
113417..113419,113423..113428,113435..113440,
113444..113449,113456..113461))
/locus_tag="Ddes_0086"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(112364..113140)
/locus_tag="Ddes_0086"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(112418..113059)
/locus_tag="Ddes_0086"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(112421..112426,112433..112435,
112442..112447,112454..112456,112463..112468,
112472..112477,112484..112489,112535..112540,
112547..112549,112556..112561,112568..112570,
112577..112582,112589..112594,112598..112603,
112610..112612,112619..112624,112631..112633,
112640..112645,112682..112687,112694..112699,
112703..112708,112715..112720,112727..112729,
112736..112741,112748..112750,112757..112759,
112769..112771,112790..112792,112799..112801,
112811..112813,112820..112825,112832..112834,
112841..112843,112850..112855,112862..112867,
112874..112876,112883..112888,112892..112894,
112904..112909,112913..112918,112925..112927,
112934..112939,112946..112951,112958..112960,
112967..112972,112979..112981,112988..112993,
112997..113002,113009..113011,113018..113023,
113030..113035))
/locus_tag="Ddes_0086"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(112724..112825)
/locus_tag="Ddes_0086"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(114728..114817)
/locus_tag="Ddes_R0001"
/note="tRNA-Ser4"
/db_xref="GeneID:7283738"
tRNA complement(114728..114817)
/locus_tag="Ddes_R0001"
/product="tRNA-Ser"
/db_xref="GeneID:7283738"
gene complement(115009..115284)
/locus_tag="Ddes_0087"
/db_xref="GeneID:7283739"
CDS complement(115009..115284)
/locus_tag="Ddes_0087"
/inference="protein motif:PFAM:PF00216"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: dvl:Dvul_2207 histone family protein DNA-binding
protein"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_002478685.1"
/db_xref="GI:220903373"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:7283739"
/translation="MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVT
FTGFGSFKVVERAARKGRNPRTGMEITIPASKVAKFTPGKGLKDAIK"
misc_feature complement(115018..115281)
/locus_tag="Ddes_0087"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(115018..115020,115039..115041,
115045..115047,115057..115062,115126..115128,
115141..115146,115153..115167,115177..115182,
115189..115194,115201..115203,115246..115248,
115258..115260,115267..115269,115276..115281))
/locus_tag="Ddes_0087"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(115033..115035,115042..115044,
115048..115050,115060..115062,115090..115101,
115108..115110,115114..115119,115123..115125,
115135..115137,115144..115149,115153..115155,
115159..115161,115204..115206,115273..115281))
/locus_tag="Ddes_0087"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene complement(115635..116570)
/locus_tag="Ddes_0088"
/db_xref="GeneID:7283740"
CDS complement(115635..116570)
/locus_tag="Ddes_0088"
/EC_number="5.1.1.3"
/inference="protein motif:TFAM:TIGR00067"
/note="KEGG: dvl:Dvul_2202 glutamate racemase;
TIGRFAM: glutamate racemase;
PFAM: Asp/Glu/hydantoin racemase"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_002478686.1"
/db_xref="GI:220903374"
/db_xref="InterPro:IPR001920"
/db_xref="InterPro:IPR004391"
/db_xref="InterPro:IPR015942"
/db_xref="GeneID:7283740"
/translation="MNQSSRLPVGLFDSGMGGLTVLKALNHRLPGEDLLYLGDTARLP
YGTKGPDTIVRYTLKAAQKLVDMGVKMLVVACNTATAAALPALRQHFAPLPVLGVVEP
GAQAAAQASRNGHIVVLGTEATINGGAYQQAIARIRPEAVVLGRACNLFVPLAEEGWM
DGPLVEGVARRYLEGFFCAPDTNGANGSNDAASTAQPRAAAGAANAPVQPDTLLLGCT
HYPLLQGALRHVVGPDVRIVDSAAITAQVVAGELARLEMLHPDTREGTGAAGMSCRTG
QSRFLTTDHVARFIRTGSLFLGRKMAENEVTLVDL"
misc_feature complement(115677..116567)
/locus_tag="Ddes_0088"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:179146"
gene complement(116616..117569)
/locus_tag="Ddes_0089"
/db_xref="GeneID:7283741"
CDS complement(116616..117569)
/locus_tag="Ddes_0089"
/inference="protein motif:PFAM:PF01925"
/note="PFAM: protein of unknown function DUF81;
KEGG: dvu:DVU0770 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478687.1"
/db_xref="GI:220903375"
/db_xref="InterPro:IPR002781"
/db_xref="GeneID:7283741"
/translation="MYFPTAGIECNPFIPFGAALCISFFTSMGGISGAFLLLPFHMSV
LGYVNPSVSATNQFFNILACPPGVWRYWREGRLIWPLALTVAAGTLPGVFLGALIRVN
WLPDPDKFKIFAGLVLLYVGGRMARAVWKGRQAESPGMKLHGAPGTSDAAVAGKDDRC
AGPDAPANCCRVLEWNTRSLSFAFQEKKHVVSTPRLALLSLVVGLIGGVYGIGGGAIM
APFLVSFFALPVYAVAGATLFATFLTSVAGVSFYSLLAPLYPGMAIAPDWRMGILVGL
GGMCGMYLGARCQKHVPATALKCLLAVILLFTALRYLGQSF"
misc_feature complement(<117171..117533)
/locus_tag="Ddes_0089"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
misc_feature complement(<117156..117524)
/locus_tag="Ddes_0089"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
misc_feature complement(116619..>116912)
/locus_tag="Ddes_0089"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
misc_feature complement(116634..>116912)
/locus_tag="Ddes_0089"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene 117878..118531
/gene="hisH"
/locus_tag="Ddes_0090"
/db_xref="GeneID:7283742"
CDS 117878..118531
/gene="hisH"
/locus_tag="Ddes_0090"
/inference="protein motif:TFAM:TIGR01855"
/note="with HisF IGPS catalyzes the conversion of
phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide
ribonucleotide phosphate and glutamine to
imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamide ribonucleotide, and
glutamate in histidine biosynthesis; the HisH subunit
provides the glutamine amidotransferase activity that
produces the ammonia necessary to HisF for the synthesis
of imidazole-glycerol phosphate and
5-aminoimidazol-4-carboxamide ribonucleotide"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisH"
/protein_id="YP_002478688.1"
/db_xref="GI:220903376"
/db_xref="InterPro:IPR000991"
/db_xref="InterPro:IPR010139"
/db_xref="InterPro:IPR011698"
/db_xref="InterPro:IPR011702"
/db_xref="GeneID:7283742"
/translation="MLAILDYKAGNQTSVRRALEHLGVPCAITADPAMLESAAGVIFP
GVGAAGQAMSALAEAGLDKALHHVARRGQPLLGICLGCQILLESSEENAAKTLGIVPG
VCRRFEDHMRQEDGSAAPVPHMGWNSLEAVAPCVLLDGIDPASEYYFVHSYYVEPDPS
LVLATTTYGRTFCSLYGRDGLWAAQFHPEKSGRPGLRLLGNFYEYCRQSRQEARHAQ"
misc_feature 117878..118504
/gene="hisH"
/locus_tag="Ddes_0090"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13141"
/db_xref="CDD:183868"
misc_feature 117884..118483
/gene="hisH"
/locus_tag="Ddes_0090"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in imidazole glycerol phosphate synthase (IGPS);
Region: GATase1_IGP_Synthase; cd01748"
/db_xref="CDD:153219"
misc_feature order(117995..118018,118106..118120,118436..118438,
118442..118444)
/gene="hisH"
/locus_tag="Ddes_0090"
/note="putative active site [active]"
/db_xref="CDD:153219"
misc_feature 117995..118018
/gene="hisH"
/locus_tag="Ddes_0090"
/note="oxyanion strand; other site"
/db_xref="CDD:153219"
misc_feature order(118112..118114,118436..118438,118442..118444)
/gene="hisH"
/locus_tag="Ddes_0090"
/note="catalytic triad [active]"
/db_xref="CDD:153219"
gene 118521..119300
/locus_tag="Ddes_0091"
/db_xref="GeneID:7283743"
CDS 118521..119300
/locus_tag="Ddes_0091"
/inference="protein motif:TFAM:TIGR00735"
/note="catalyzes the conversion of
5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-
1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine
to imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamideribonucleotide and glutamate;
the HisF subunit acts as a cyclase"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisF"
/protein_id="YP_002478689.1"
/db_xref="GI:220903377"
/db_xref="InterPro:IPR004651"
/db_xref="InterPro:IPR006062"
/db_xref="GeneID:7283743"
/translation="MLSKRVIPCLDVRNGRLTKGVKFVGNEDIGDPVESARRYYEEGA
DEIVFYDITASAEARGIFLDVVERVAEQIFIPFSVGGGISSVADMRAVLLAGAEKVSI
NSAAVKNPRLIGDGADAFGSQAVVVGMDVLAVPESPEIPSGYEIVIHGGRKRMGLDAI
AWARCCQELGAGELCVNSIDADGTKDGYELKLTRAIADAVSLPVIASGGAGEPRHMLE
AVTGGGASAALIASIVHYGQYSIRQCKEYMAAHGARMRLTW"
misc_feature 118530..119273
/locus_tag="Ddes_0091"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature 118533..119183
/locus_tag="Ddes_0091"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature order(118575..118577,118668..118670,118764..118766,
118827..118832,118902..118904,118908..118910,
118968..118970,119049..119051,119064..119069,
119139..119147,119211..119216)
/locus_tag="Ddes_0091"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature order(118638..118640,118653..118655,118719..118721,
118731..118733,118740..118742,118746..118748,
118803..118805,118812..118817,118887..118889,
119037..119039,119121..119123,119196..119198)
/locus_tag="Ddes_0091"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene 119529..120461
/locus_tag="Ddes_0092"
/db_xref="GeneID:7283744"
CDS 119529..120461
/locus_tag="Ddes_0092"
/inference="similar to AA sequence:KEGG:Dvul_0429"
/note="KEGG: dvl:Dvul_0429 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478690.1"
/db_xref="GI:220903378"
/db_xref="GeneID:7283744"
/translation="MTNRDAARSCGGKPAVSTGQAALPQGLARLLADLPALAVAFSGG
IDSRFLCHAALLCGCDVLAVHARGPHVPAEESDSAQVWARARGLPLLVVDFDPLSLPE
VAVNSRQRCYACKQGLLKAIAGALAHTGKMAGNAPAGKDPHGTRLLCDGSNADDLTAF
RPGLRALKEAGIISPLAEAGMGKEAIRAAARAAGLDNPDQCARPCLLTRLAYGLAPQK
DVLRRIAAVESSLAALRGGGDVGGIAPGPVAGCALGDFRLRLVPQPVLQAQFLPEALA
ASVRRILEAHGFMDCELLVGQGVSGFFDRPPVQP"
misc_feature 119649..120230
/locus_tag="Ddes_0092"
/note="Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases, ATP sulphurylases Universal
Stress Response protein and electron transfer flavoprotein
(ETF). The domain forms a apha/beta/apha fold which binds
to Adenosine nucleotide; Region: AANH_like; cl00292"
/db_xref="CDD:213090"
misc_feature order(119649..119651,119658..119669,119721..119723,
119727..119729)
/locus_tag="Ddes_0092"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:73291"
gene 120493..120726
/locus_tag="Ddes_0093"
/db_xref="GeneID:7283745"
CDS 120493..120726
/locus_tag="Ddes_0093"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_0428 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478691.1"
/db_xref="GI:220903379"
/db_xref="GeneID:7283745"
/translation="MRPACFSALHTALRLHAGLDFALKRAYEYPLISMGLTPEDIMAH
KKIERKKELDRRRHRRAERLKQRVREAKAAAKA"
gene 121331..121672
/locus_tag="Ddes_0094"
/db_xref="GeneID:7283746"
CDS 121331..121672
/locus_tag="Ddes_0094"
/inference="protein motif:TFAM:TIGR02605"
/note="TIGRFAM: regulatory protein, FmdB family;
PFAM: Putative regulatory protein FmdB;
KEGG: dvl:Dvul_0427 FmdB family regulatory protein"
/codon_start=1
/transl_table=11
/product="FmdB family regulatory protein"
/protein_id="YP_002478692.1"
/db_xref="GI:220903380"
/db_xref="InterPro:IPR013429"
/db_xref="GeneID:7283746"
/translation="MIMPIYEYQCSKCQHRFEEWVKSPSDQGEEPCPKCGAASPRIMS
QTSFVLKGGGWYVDDYGYRKGIKEEGGASSSPSPAEASPAAPAAPAPAAAPAAAPATP
APAAGPAKTDS"
misc_feature 121337..121492
/locus_tag="Ddes_0094"
/note="putative regulatory protein, FmdB family; Region:
CxxC_CxxC_SSSS; TIGR02605"
/db_xref="CDD:211756"
misc_feature 121337..121462
/locus_tag="Ddes_0094"
/note="Putative regulatory protein; Region:
CxxC_CXXC_SSSS; smart00834"
/db_xref="CDD:197903"
gene 121680..122990
/locus_tag="Ddes_0095"
/db_xref="GeneID:7283747"
CDS 121680..122990
/locus_tag="Ddes_0095"
/inference="protein motif:TFAM:TIGR00928"
/note="TIGRFAM: adenylosuccinate lyase;
PFAM: fumarate lyase;
KEGG: dvl:Dvul_0426 adenylosuccinate lyase"
/codon_start=1
/transl_table=11
/product="adenylosuccinate lyase"
/protein_id="YP_002478693.1"
/db_xref="GI:220903381"
/db_xref="InterPro:IPR000362"
/db_xref="InterPro:IPR003031"
/db_xref="InterPro:IPR004769"
/db_xref="GeneID:7283747"
/translation="MIERYTRPEMDRIWTLKNRYQAWLDVELAVCRAWSEMGRIPAEA
VAVICDKAAIDVDRILEIEEVTRHDVIAFLTSLEEKVGPDARYIHLGCTSSDIVDTAN
ALLLVQAGELILKDIRGLLGSIESLARRHKGVLCMGRTHGIHAEPTSFGLKMAGFYAE
FSRHLARVEAGLESVRVGKISGAVGTYAFLSPELEARALGHLGLGVDPHSTQIIQRDR
YAHFFTSLAILGGGIERLCVELRHLQRTEVLEVEEGFARGQKGSSAMPHKKNPISAEN
MTGLSRLLRTNALAALENQALWHERDISHSSVERVIMPDSTILADYILARLTRLLDGL
VVKPDRMRENMDRSFGLYFSQRVLTALVSGGLPRQQAYEAVQRLAMQSWESRVPFPDL
VRADADMSSRLGEAALKDLFDPSYYLQHEDEIFARVFAESPARA"
misc_feature 121680..122975
/locus_tag="Ddes_0095"
/note="adenylosuccinate lyase; Provisional; Region:
PRK07492"
/db_xref="CDD:181000"
misc_feature 121689..122960
/locus_tag="Ddes_0095"
/note="Adenylsuccinate lyase (ASL)_subgroup 1; Region:
Adenylsuccinate_lyase_1; cd01360"
/db_xref="CDD:176464"
misc_feature order(121722..121727,121884..121886,121911..121913,
121938..121943,121947..121952,122094..122111,
122115..122117,122133..122138,122145..122147,
122154..122159,122175..122180,122196..122198,
122226..122237,122244..122246,122250..122252,
122298..122300,122304..122309,122328..122330,
122340..122342,122361..122363,122382..122384,
122394..122396,122400..122405,122409..122414,
122484..122489,122502..122504,122514..122516,
122523..122528,122532..122537,122544..122549,
122556..122564,122568..122591,122598..122603,
122607..122612,122622..122624,122742..122744,
122754..122756,122763..122768,122781..122786,
122931..122933,122937..122939,122949..122951)
/locus_tag="Ddes_0095"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176464"
misc_feature order(121881..121883,121944..121946,122100..122102,
122313..122315,122481..122483,122487..122489,
122502..122504)
/locus_tag="Ddes_0095"
/note="active site"
/db_xref="CDD:176464"
gene 123003..123584
/locus_tag="Ddes_0096"
/db_xref="GeneID:7283748"
CDS 123003..123584
/locus_tag="Ddes_0096"
/EC_number="2.4.2.10"
/inference="protein motif:TFAM:TIGR00336"
/note="KEGG: dvl:Dvul_0425 orotate
phosphoribosyltransferase;
TIGRFAM: orotate phosphoribosyltransferase;
PFAM: phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_002478694.1"
/db_xref="GI:220903382"
/db_xref="InterPro:IPR000836"
/db_xref="InterPro:IPR004467"
/db_xref="GeneID:7283748"
/translation="MSVCTQEHMMELKRRLARLLVEKSYREGDFMLASGRRSDYYFDC
RVTALHAEGSWLIGTLFNHMLRDLDIRGVGGMTMGADPLVSATTVVSHEQGRPLHGLL
VRKEAKGHGTGQFVEGLGNFNAGDRVAMLEDVVTTGGSLLKACHRISDAELNIVAVCA
ILDREEGGREKLREAGYELLALFTRAELVALAR"
misc_feature 123219..123554
/locus_tag="Ddes_0096"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(123231..123233,123237..123239,123396..123404,
123408..123422,123492..123494)
/locus_tag="Ddes_0096"
/note="active site"
/db_xref="CDD:206754"
gene 123760..126228
/locus_tag="Ddes_0097"
/db_xref="GeneID:7283749"
CDS 123760..126228
/locus_tag="Ddes_0097"
/inference="protein motif:PFAM:PF03734"
/note="PFAM: ErfK/YbiS/YcfS/YnhG family protein;
KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein"
/codon_start=1
/transl_table=11
/product="ErfK/YbiS/YcfS/YnhG family protein"
/protein_id="YP_002478695.1"
/db_xref="GI:220903383"
/db_xref="InterPro:IPR005490"
/db_xref="GeneID:7283749"
/translation="MAVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQAS
LYNEGLPSHLVAVDKNRQTFMFFEKKSPLKLRYTYPCTTGQLTGDKKVLNDLRTPEGV
YFVEYKIASGLDFKEYGGIAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCV
AIGLKEIDEVGPSLVPGTAVVLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSS
RMFEFYDADAYSKAMPESFAAFRLNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQ
FYTASNLSTEGVRRLYWQRGDDKKFRIVGMEWSPRDLGMRAAYQKGQLVAEAPLQTAS
DADSEAPLPPRLDMPESAADGTEVVTASAADGSKAGGKTSAEAAAPGKSVALSEPLVP
RRMQAPPPAEVNWGARPAMEDSARVAAEQRAAEELAARQRAEEERAAAQRLAEIRAAE
ERAAAVKAEAERLAAEQAAAEKAAAEAEAQRLAQLAAEKLAAERAAAKAEAERLAAEK
AAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQLAAQRAAEELEAKKQAALAAQDLRLT
PELRTQLQQAVSGWNAALAARSPALADFYDHARFNREPGAPRGLSYNAAWRELEKHLG
APWLRYISRKPSFEVQGKLAVSRCEELVAGPHGLSEGVRTLWWRKGDNGDLRIVASQF
QPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAYMAYYTDSAVQQGRWGAKNIR
RQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADSAGHSDRGTKTLLLQYDGK
KWLITREDWTAAPAAAPAPGGGRP"
sig_peptide 123760..123876
/locus_tag="Ddes_0097"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.937 at
residue 39"
misc_feature 123913..124305
/locus_tag="Ddes_0097"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:202749"
misc_feature 125860..126165
/locus_tag="Ddes_0097"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene 126225..126971
/locus_tag="Ddes_0098"
/db_xref="GeneID:7283750"
CDS 126225..126971
/locus_tag="Ddes_0098"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_0423 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478696.1"
/db_xref="GI:220903384"
/db_xref="GeneID:7283750"
/translation="MKYKESLSIIFMRDNGPRRSFRVCRGRFYAALVFFACLPVLSSV
LGWHCWQLWQENAALRANVLRFESDYQGAQATAERLEHLEELLREEDVQGRDLVLRRL
GGGEPAVEAPPADRDENGKSEALRGAEGPGHEDFPAIDLDYVKVGNVQVRALRGGKLR
LALDLRNTDNQRLASGSVSGTLITADGAKHPLSFDPENVGDFRISRFKRTVIVVRLPG
RLDLVNAQVILEVRNQDESVVYRNIFPVEH"
gene complement(127384..129690)
/locus_tag="Ddes_0099"
/db_xref="GeneID:7283751"
CDS complement(127384..129690)
/locus_tag="Ddes_0099"
/inference="protein motif:PFAM:PF00330"
/note="PFAM: aconitate hydratase domain protein;
KEGG: dsy:DSY4204 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478697.1"
/db_xref="GI:220903385"
/db_xref="InterPro:IPR001030"
/db_xref="GeneID:7283751"
/translation="MIELISNAVVIDGNTIRSAEEARAKGVDVEAARKNSLAARILSA
HNTAPAGENVLRIRFDALASHDITYVGIIQTARASGLTEFPVPYALTNCHNSLCAVGG
TINEDDHLFGLAAAQKYGGIFVPPHLAVIHQYVREMMTKCGGMILGSDSHTRYGALGV
MAVGEGGPELVKQLLGKTYDVADPQKIAVWLEGTPRPGVGPQDVALALIAAVFKNGFV
KNKVLEFMGPGVEGLSVEYRCGIDVMTTETTCLSSIWTTDAKVARYLEQHGRPGDYAE
LRLEGPAAYDGLIRIDLGKIVPMMALPFHPSNAYPVAEVARHAPELLAHVEDEARRQF
GDAARGLNLCGKIRDGGLWVDQGIIAGCAGGSFENITLAAAILDGKSTGNLAFSLSVY
PASEPQGLALVNNGSTAKLMAAGAVMKNAFCGPCFGAGDTPAHGALSIRHTTRNFPNR
EGSKPANGQLSAVALMDARSIAATAANGGRLTPATDLDWSAPGLAGISLDYRFEPLIY
HRRVYNGFGQAKPETPLIFGPNIADWPAMSALPEHLLLQVASVITDPVTTTDELIPSG
ETSSLRSNPLKLAEYTLSRKDPGYVERAKTVNALEKTRLSNAADADLVARVRALFAIC
GLNIPQNGTDLADVGIGSTIFAVKPGDGSAREQAASCQKVLGGWANLAVEYATKRYRS
NLINWGMLPFIVDADLADVLQIGDWLAVPHVRKAVQEAEPTLLAHIVRENGTSEQIAL
TLKDLTDDERQIILDGCLINFYNATRTA"
misc_feature complement(127396..129690)
/locus_tag="Ddes_0099"
/note="putative hydratase; Provisional; Region: PRK11413"
/db_xref="CDD:183125"
misc_feature complement(128254..129459)
/locus_tag="Ddes_0099"
/note="Aconitase catalytic domain; Aconitase catalyzes the
reversible isomerization of citrate and isocitrate as part
of the TCA cycle; Region: Aconitase; cl00285"
/db_xref="CDD:199278"
misc_feature complement(order(128341..128343,128356..128358,
128410..128412,129238..129243))
/locus_tag="Ddes_0099"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153129"
misc_feature complement(order(128359..128361,128410..128415,
128422..128424,128605..128607,129235..129237))
/locus_tag="Ddes_0099"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153129"
misc_feature complement(127558..128019)
/locus_tag="Ddes_0099"
/note="Aconitase swivel domain. Aconitase (aconitate
hydratase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle. This is
the aconitase swivel domain, which undergoes swivelling
conformational change in the enzyme...; Region:
Aconitase_swivel; cl00215"
/db_xref="CDD:213084"
misc_feature complement(127726..127734)
/locus_tag="Ddes_0099"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73200"
gene complement(129739..130443)
/locus_tag="Ddes_0100"
/db_xref="GeneID:7283752"
CDS complement(129739..130443)
/locus_tag="Ddes_0100"
/inference="protein motif:PFAM:PF01810"
/note="PFAM: Lysine exporter protein (LYSE/YGGA);
KEGG: bcz:BCZK2117 homoserine/threonine efflux protein"
/codon_start=1
/transl_table=11
/product="lysine exporter protein LysE/YggA"
/protein_id="YP_002478698.1"
/db_xref="GI:220903386"
/db_xref="InterPro:IPR001123"
/db_xref="GeneID:7283752"
/translation="MISLENLLLFVPMAALLVMLPGPDFALIAKISLLNGRPQGQAAA
CGVALGISVHTTAAMLGISAIIAQSVLWFSILKYVGAAYLIWLGIQALRHGRQASAAV
VKVAPQADDLKEHAPAHGVMKKPAAAPHLTGRQWWSFFRQGFLTNALNPKAVIIFLTF
LPQFMNPHAPLGPQFLELGGILSALCLLWYVPLAYMLGRVRHIFESSRFQLWLQRFTG
FIFIAFGLKLAAAQSR"
sig_peptide complement(130363..130443)
/locus_tag="Ddes_0100"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.783) with cleavage site probability 0.779 at
residue 27"
misc_feature complement(129760..130386)
/locus_tag="Ddes_0100"
/note="LysE type translocator; Region: LysE; cl00565"
/db_xref="CDD:207111"
gene complement(130685..131827)
/locus_tag="Ddes_0101"
/db_xref="GeneID:7283753"
CDS complement(130685..131827)
/locus_tag="Ddes_0101"
/inference="protein motif:PFAM:PF00180"
/note="PFAM: isocitrate/isopropylmalate dehydrogenase;
KEGG: dvl:Dvul_2464 isocitrate/isopropylmalate
dehydrogenase"
/codon_start=1
/transl_table=11
/product="isocitrate/isopropylmalate dehydrogenase"
/protein_id="YP_002478699.1"
/db_xref="GI:220903387"
/db_xref="InterPro:IPR001804"
/db_xref="GeneID:7283753"
/translation="MRKTVYWIEGDGIGPEIWQAARPVIEGAIRAAGADLTLDWVELL
AGDKAVKENGHPLPEATLEALRHAELAMKGPLGTPVGTGIRSLNVALRQTLDLYACIR
PVRHFEGLETPVKHPERVNMVIFRENTEDVYAGVEFAANTPEARKLVAFLRDELGVTK
VGDDAAVGIKPMTEAGSKRLVRRALRFALDQKQESLTLVHKGNIMKFTEGAFRQWGYD
VAAQEFGDCTCTEKEPVAGRLVVKDRIADAMFQEALLRPEQYQVLATPNLNGDYISDA
LAAQVGGLGLAPGVNMSDTLAFYEATHGTAPTIAGKDRANPGSVILCGALMLEHLGQH
DAAGRIRRAVAKAIAGKAVTEDLAAQVTGSRVVGCKEFGDIIGTNL"
misc_feature complement(130706..131815)
/locus_tag="Ddes_0101"
/note="isocitrate dehydrogenase; Validated; Region:
PRK06451"
/db_xref="CDD:180566"
misc_feature complement(130688..131809)
/locus_tag="Ddes_0101"
/note="Isocitrate/isopropylmalate dehydrogenase; Region:
Iso_dh; cl00445"
/db_xref="CDD:212218"
gene complement(131915..133750)
/locus_tag="Ddes_0102"
/db_xref="GeneID:7283754"
CDS complement(131915..133750)
/locus_tag="Ddes_0102"
/inference="protein motif:PFAM:PF00682"
/note="PFAM: pyruvate carboxyltransferase;
KEGG: dvl:Dvul_2536 pyruvate carboxyltransferase"
/codon_start=1
/transl_table=11
/product="pyruvate carboxyltransferase"
/protein_id="YP_002478700.1"
/db_xref="GI:220903388"
/db_xref="InterPro:IPR000891"
/db_xref="GeneID:7283754"
/translation="MSNIIHQSGGSRTLVMQEPETPQLYRELFPYTSICRTSFDEVLL
APRPAEQMRITDTTFRDGQQARPPYTVKQVAKMFDFLHRLGGKTGLITASEFFLYSAK
DRKCIDVCRARGYRFPRVTAWIRATRDDLKLARDMEFDETGMLTSVSDYHIFLKLGKT
RQQAMDMYVGMAEQALEWGIIPRCHFEDITRADIYGFCLPLAQRLMELSRQSGMPVKI
RLCDTMGYGVPYPGAALPRSVQRIVRAFTDEAGVPGQWLEWHGHNDFHKVLVNGVTAW
LNGCGAVNSTLFGFGERTGNTPLEALLVEYISLTGDDAAADTTVLHEVAQFFEKELDY
RIPHNYPFVGRDFNATSAGVHADGLAKNEEIYNIFDTKHLLGRSVPIIITDKTGRAGV
AYWINTNLNLEKERQISKKHPAVGKIYDAIMAVYEETGRTTNFSHVEMEALVQRFMPE
LFVSEFDNMKQLAGELAANLLVRLARDKDLLDFGEKAHAKIDAFEREYPFIQYCYLTD
ATGSLKCSAITDPMYKETYEALPIGYDFSGREWFKKPMQSGDLHIMDVYQSHFTSKLI
ITVSCAVTDEKDNIAGVIGVDIQLEELLKRARSLKHEVGTVDDGD"
misc_feature complement(132413..133603)
/locus_tag="Ddes_0102"
/note="Isopropylmalate/homocitrate/citramalate synthases
[Amino acid transport and metabolism]; Region: LeuA;
COG0119"
/db_xref="CDD:30468"
misc_feature complement(132761..133591)
/locus_tag="Ddes_0102"
/note="Clostridium kluyveri Re-citrate synthase and
related proteins, catalytic TIM barrel domain; Region:
DRE_TIM_Re_CS; cd07947"
/db_xref="CDD:163684"
misc_feature complement(order(132965..132967,132971..132973,
133088..133090,133190..133192,133376..133378,
133382..133384,133466..133468,133559..133561,
133568..133573))
/locus_tag="Ddes_0102"
/note="active site"
/db_xref="CDD:163684"
misc_feature complement(order(133466..133468,133568..133573))
/locus_tag="Ddes_0102"
/note="catalytic residues [active]"
/db_xref="CDD:163684"
misc_feature complement(order(132965..132967,132971..132973,
133088..133090,133568..133570))
/locus_tag="Ddes_0102"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163684"
misc_feature complement(<131948..132094)
/locus_tag="Ddes_0102"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
gene 133985..136192
/locus_tag="Ddes_0103"
/db_xref="GeneID:7283755"
CDS 133985..136192
/locus_tag="Ddes_0103"
/inference="protein motif:PFAM:PF00773"
/note="PFAM: ribonuclease II;
KEGG: dvl:Dvul_0179 ribonuclease II"
/codon_start=1
/transl_table=11
/product="ribonuclease II"
/protein_id="YP_002478701.1"
/db_xref="GI:220903389"
/db_xref="InterPro:IPR001900"
/db_xref="GeneID:7283755"
/translation="MSDCVRYPAPGCVVEYLEGNAVQIALITEEAGGRLRLLLPNRRE
TRLNAPRLLPWLGPMYSADLGKEDAVRLLEQHRKSREELAADVPVMDAWELAQGEVAI
APAQWFAELFATDPDSDQVAAYGRALLACKSHFRFQPPDFQVFPAETVEKRLTEEKTR
LEREALIAGGAAFLRLLWDVACRKRDLPPPPAAGSGSGEWPAPEVAGRLEEVLRVRMT
DPEGQEHETLWRTLAKGLPDVPHLPVQLLMAWGKLPAHYNFWLDRAGYTPGDSWWMPH
REEVEALAAAAAVGAMPFVQPAPETVSAETPLPENSKCPVPGLLPESPLPFISIDSAS
TRDVDDAFYVETTADGRTLTLALACPALYWPFGGPLDKAVLHRGTSIYLPEGDCHMLP
EELGTSSYSLLAGQPRPALCVRVPVDGNGHFGPCEVYLARVNLAANLTYSDSQAVLDA
LAAGESAALPDNPAATHADLLGLGLALARQRQQARIEGGAVIMDRPDPAIRLEGEGTE
VRVHVGPDYHAPDAQMLVAEMMILASAAVAHWALERDVAMLHRVQDVVLPREYAGIWH
TPQDMTRIMRALTPSGLEVQARPHAALGLDRYTPVTSPLRRYPDLVNEAQVVHFLCSG
QPRWSESALTELLQTLSPVLDAVGQVQRFRPRYWKLLYFRQQGDKVWWPGVITEENDA
FVSVSLQDQGMFVRGRRKLFDDRAHPGLRVDVRIGKVHPLYNEIMILEAATVD"
misc_feature 134957..135847
/locus_tag="Ddes_0103"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:201436"
misc_feature 134957..135847
/locus_tag="Ddes_0103"
/note="This domain is the catalytic domain of ribonuclease
II; Region: RNB; smart00955"
/db_xref="CDD:198023"
gene 136302..136973
/locus_tag="Ddes_0104"
/db_xref="GeneID:7283756"
CDS 136302..136973
/locus_tag="Ddes_0104"
/inference="protein motif:PFAM:PF02660"
/note="PFAM: protein of unknown function DUF205;
KEGG: dvl:Dvul_0178 hypothetical protein"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_002478702.1"
/db_xref="GI:220903390"
/db_xref="InterPro:IPR003811"
/db_xref="GeneID:7283756"
/translation="MLEILWIALAYVLGSAPWGLVIARTFCGIDPRESGSRNTGATNV
ARLCGFGWGVATLLCDVLKGAVPVWLAFRINASPVFVSMVALACVLGHVFSCFMKFRG
GKAVATSIGIFLPLAFWQLLASSLLCMLVIWRSGFVSLGSLTLVTALPVALAVSGQWG
WLPLSLAVWAVVVWKHRENIVRLRSGTEKSWLKSKNKGAAAGNAAEGDDTQNMNPQDA
GRKDG"
misc_feature 136302..136970
/locus_tag="Ddes_0104"
/note="membrane protein; Provisional; Region: PRK14397"
/db_xref="CDD:172873"
gene 137283..138728
/locus_tag="Ddes_0105"
/db_xref="GeneID:7283757"
CDS 137283..138728
/locus_tag="Ddes_0105"
/EC_number="4.2.3.1"
/inference="protein motif:TFAM:TIGR00260"
/note="KEGG: dvl:Dvul_0177 threonine synthase;
TIGRFAM: threonine synthase;
PFAM: Pyridoxal-5'-phosphate-dependent protein beta
subunit"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_002478703.1"
/db_xref="GI:220903391"
/db_xref="InterPro:IPR000634"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR004450"
/db_xref="GeneID:7283757"
/translation="MAHADFPAYRGRMEYVCLDCGARYPGDSLLYTCPQCGGVFLLEN
LDFARLKERSGQEWRKIFDDRCASRSTALKGIFRYYELLAPLLDEDDIVYLGEGITPV
VEASAALRDMTGVAFAYKNDGQNPSASFKDRGMACAFSYLKWLCRRNQWDEVLTVCAS
TGDTSAAAALYASYVGAPLKSVVLLPHGKVTPQQLAQPLGSGATVLELPGVFDDCMKV
VELLAENYRVALLNSKNSWRILGQESYAYEVAQWYGWDMTDQCLFVPIGNAGNVTAIM
SGFLKMLDLGMITGLPRIFGVQSEHADPVWRYYDAPAGSRCWQPVTVQPSVAQAAMIG
NPVSFPRVRMLAERFMESGGERAFQVVRVTEQQIMDAMIMANRHGHIACTQGGECLAG
LRNARTLGLVGDHEHAVLDATAHALKFAGFQDMYFNDAFPPEYGVSPDKSLANLPELL
LPQSAREGRDVAEFASLGAEAVVQRLKLQKK"
misc_feature 137328..138536
/locus_tag="Ddes_0105"
/note="threonine synthase; Validated; Region: PRK06260"
/db_xref="CDD:180494"
misc_feature 137508..138539
/locus_tag="Ddes_0105"
/note="Threonine synthase is a pyridoxal phosphate (PLP)
dependent enzyme that catalyses the last reaction in the
synthesis of threonine from aspartate. It proceeds by
converting O-phospho-L-homoserine (OPH) into threonine and
inorganic phosphate. In plants; Region: Thr-synth_1;
cd01563"
/db_xref="CDD:107206"
misc_feature order(137568..137570,137583..137588,137655..137657,
137742..137744,137790..137792,137799..137804,
137826..137828,137877..137897,137901..137909,
137943..137948,138036..138038,138405..138413,
138417..138422,138525..138527)
/locus_tag="Ddes_0105"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:107206"
misc_feature order(137673..137675,137769..137771,138081..138095,
138519..138521)
/locus_tag="Ddes_0105"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107206"
misc_feature 137673..137675
/locus_tag="Ddes_0105"
/note="catalytic residue [active]"
/db_xref="CDD:107206"
gene 138947..139396
/locus_tag="Ddes_0106"
/db_xref="GeneID:7283758"
CDS 138947..139396
/locus_tag="Ddes_0106"
/inference="protein motif:PFAM:PF06445"
/note="PFAM: transcription activator effector binding;
KEGG: aoe:Clos_2726 transcription activator effector
binding"
/codon_start=1
/transl_table=11
/product="transcription activator effector binding
protein"
/protein_id="YP_002478704.1"
/db_xref="GI:220903392"
/db_xref="InterPro:IPR010499"
/db_xref="GeneID:7283758"
/translation="MDEFKATVVNFPATRLTGMKVRTSLAHAQQDCPAVWQRFGPRMP
GIEGRQSFGVSIMLSAEEIEYWAAVEADGRELPADMGHVDVPAGTYVACRVPDLESIG
IAYMFIFEKWLGSQETYAYNEQVPCFELYPPAWCPDVPFEIYVPLKG"
misc_feature 138965..139390
/locus_tag="Ddes_0106"
/note="Bacterial transcription activator, effector binding
domain; Region: AraC_E_bind; smart00871"
/db_xref="CDD:197939"
gene complement(139534..140883)
/locus_tag="Ddes_0107"
/db_xref="GeneID:7283759"
CDS complement(139534..140883)
/locus_tag="Ddes_0107"
/EC_number="2.7.8.6"
/inference="protein motif:TFAM:TIGR03025"
/note="KEGG: dvl:Dvul_2655 sugar transferase;
TIGRFAM: sugar transferase, PEP-CTERM system associated;
exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase;
PFAM: sugar transferase"
/codon_start=1
/transl_table=11
/product="exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase"
/protein_id="YP_002478705.1"
/db_xref="GI:220903393"
/db_xref="InterPro:IPR003362"
/db_xref="InterPro:IPR017464"
/db_xref="InterPro:IPR017475"
/db_xref="GeneID:7283759"
/translation="MISSYRMGLLQVLDLFCILLALTISGMTTIAPDLSVFDDYTGAS
LFTIFFYMLFFYILDAYNVGNEDFKETTGRVLVACLLAIVSSATASYAFQHWRFDRKT
ITLLFALSFCLSLLWRWLYHLNADRLTHPLRILLVGVDRAGKVRQLLAEGLPQAEILG
YVGERDQGPDAGPCLGPPFLALDIAQEKKATMILLLPDAPIDDDIAHELLQAKLRGSM
VVDIRSFYEHVVQRLPLSQLTDEWLLQTEGFSLNTRGSLRRLKRALDVLISLLLLIPA
TPVMLLTALIVRLESPGPVIYKQDRVGLFEKEFTVYKFRSMRADAEKDGAVWASAKDS
RVTFFGRFIRKVRIDELPQIWNILKGDMSFIGPRPERMTFVQKLKETIPYYSLRHTVK
PGLTGWAQVCYPYGASEEDARRKLEYDLYYIKNMSILLDINIIFKTIGVVLFPKGAR"
misc_feature complement(139543..140853)
/locus_tag="Ddes_0107"
/note="sugar transferase, PEP-CTERM system associated;
Region: EpsB_2; TIGR03013"
/db_xref="CDD:163104"
misc_feature complement(139537..140103)
/locus_tag="Ddes_0107"
/note="Bacterial sugar transferase; Region: Bac_transf;
pfam02397"
/db_xref="CDD:202231"
gene complement(141243..142391)
/locus_tag="Ddes_0108"
/db_xref="GeneID:7283760"
CDS complement(141243..142391)
/locus_tag="Ddes_0108"
/inference="protein motif:PFAM:PF00534"
/note="PFAM: glycosyl transferase group 1;
KEGG: dvl:Dvul_2654 glycosyl transferase, group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_002478706.1"
/db_xref="GI:220903394"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:7283760"
/translation="MKIIVLGNQARSMSNFWSVLIRRMHRAGHEVVCCAPPGDPGSEA
ALAAQGARLLHYPLDRKGLNPLRDLRTTGALLRLFKAEKPDLLFSSTIKPVIYGCIAA
RVAGIPHVYATITGLGYAFEADSFFKKCVNRLSALLYRTALAGTEGVFFQNDDDIAVF
RRAGILGARARILKARGTGVDTSRFAPAPLPGLEADGSLEGPPVFLLVARLLEAKGLE
EYAQAARTLKAAHPQARFLLLGPAEQGLGSISLETVRQWQTEGCIEYLGETRDVRPYV
SAAHVMVLPSWREGTPTSIMEGMSMGRAAVVTDAPGCREVVRDGYNGYLVPLRDPQAL
AAAMEKFIRQPKLMAEMGANGRRMAVDEFDAEKVAVRILEDMRVPALA"
misc_feature complement(141270..142391)
/locus_tag="Ddes_0108"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(141270..142388)
/locus_tag="Ddes_0108"
/note="This family is most closely related to the GT1
family of glycosyltransferases. cap1E in Streptococcus
pneumoniae is required for the synthesis of type 1
capsular polysaccharides; Region: GT1_cap1E_like; cd03808"
/db_xref="CDD:99980"
misc_feature complement(order(141510..141512,141576..141578,
141762..141770,142308..142310))
/locus_tag="Ddes_0108"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99980"
gene 142663..143685
/locus_tag="Ddes_0109"
/db_xref="GeneID:7283761"
CDS 142663..143685
/locus_tag="Ddes_0109"
/inference="protein motif:PFAM:PF01370"
/note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta
hydroxysteroid dehydrogenase/isomerase; polysaccharide
biosynthesis protein CapD; Male sterility domain;
KEGG: dvl:Dvul_2662 NAD-dependent epimerase/dehydratase"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_002478707.1"
/db_xref="GI:220903395"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR002225"
/db_xref="InterPro:IPR003869"
/db_xref="InterPro:IPR008089"
/db_xref="InterPro:IPR013120"
/db_xref="GeneID:7283761"
/translation="MSAYSQLCATMQASPSRWLITGVAGFIGSNLLERLLGLGQTVVG
LDNFLTGYQKNLDMVRDIVGPEAWSRFTFIEGDIRDVDTCRKACEGVQHVLHEAALGS
VPRSIDDPLLSNSCNITGFLHMLVAARDAGVKSFVYAASSSTYGDSPELPKVEDKIGR
PLSPYAVTKYVDELYADVFTRCYGFSSVGLRYFNVFGQRQDPYGAYAAVIPQWFASLI
KGETVYVNGDGETSRDFCYIDNVVEANLLASFARGEAANTVYNVAFGQRTTLNELFAL
IREEVARHKPEAAKADVEHRDFRAGDVRHSLADISRAETRLGYAPRFDVRQGLRLAGD
WYAANL"
misc_feature 142663..143670
/locus_tag="Ddes_0109"
/note="Vi polysaccharide biosynthesis protein TviC;
Provisional; Region: PRK15181"
/db_xref="CDD:185103"
misc_feature 142711..143670
/locus_tag="Ddes_0109"
/note="UDP-N-acetylglucosamine 4-epimerase, extended (e)
SDRs; Region: UDP_AE_SDR_e; cd05256"
/db_xref="CDD:187566"
misc_feature order(142726..142728,142732..142743,142798..142815,
142888..142896,142951..142959,142963..142965,
143008..143010,143077..143085,143155..143157,
143167..143169,143236..143247,143281..143283)
/locus_tag="Ddes_0109"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187566"
misc_feature order(142963..142968,143083..143091,143155..143157,
143236..143238,143242..143244,143284..143289,
143296..143301,143332..143340,143353..143355,
143359..143361,143470..143472,143557..143559,
143566..143571,143578..143580)
/locus_tag="Ddes_0109"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187566"
misc_feature order(142978..142983,142990..142995,143002..143004,
143014..143019,143026..143028,143038..143040,
143047..143049,143143..143154,143161..143166,
143170..143175,143182..143187,143194..143199,
143209..143211)
/locus_tag="Ddes_0109"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187566"
misc_feature order(143011..143013,143083..143085,143155..143157,
143167..143169)
/locus_tag="Ddes_0109"
/note="active site"
/db_xref="CDD:187566"
gene complement(143616..144128)
/locus_tag="Ddes_0110"
/db_xref="GeneID:7283762"
CDS complement(143616..144128)
/locus_tag="Ddes_0110"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: similar to CREB-regulated transcription
coactivator 1 (Transducer of regulated cAMP response
element-binding protein 1) (Transducer of CREB protein
1) (Mucoepidermoid carcinoma translocated protein 1)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478708.1"
/db_xref="GI:220903396"
/db_xref="GeneID:7283762"
/translation="MRQHFFCVPGSRGSIKAQGKNTIGKRVTNRESGPALHAAAPLSH
CAQKQCRRRQKSFSGEWSHQDRSNPDRQRPSRPEQQAPEPLLPEAAQAARRQTPAITP
QHSLDRHPKNPRKTGTLSATLPRATAGAHNSGNAHPQMSIPEGNRLYRLAAYQSPASR
SPCRTSKRGA"
misc_binding 144283..144384
/note="gcvT element as predicted by Rfam (RF00504), score
53.33"
/bound_moiety="glycine"
gene 144617..144919
/locus_tag="Ddes_0111"
/db_xref="GeneID:7283763"
CDS 144617..144919
/locus_tag="Ddes_0111"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478709.1"
/db_xref="GI:220903397"
/db_xref="GeneID:7283763"
/translation="MPYRSLVLSSPEHCDSPGASTPVDVSSLNLIEQAQARYAAAAHR
APVLLEGRALRDCAFVDVELLRATIESLNCSIASLSPPHWRPSGSEPARLPHEKEM"
gene 144921..146207
/locus_tag="Ddes_0112"
/db_xref="GeneID:7283764"
CDS 144921..146207
/locus_tag="Ddes_0112"
/EC_number="1.21.4.3"
/inference="protein motif:PRIAM:1.21.4.3"
/note="PFAM: Glycine/sarcosine/betaine reductase complex
protein B alpha and beta subunits;
KEGG: chy:CHY_2391 glycine reductase proprotein GrdE"
/codon_start=1
/transl_table=11
/product="Sarcosine reductase"
/protein_id="YP_002478710.1"
/db_xref="GI:220903398"
/db_xref="InterPro:IPR015417"
/db_xref="GeneID:7283764"
/translation="MKLELHRIMVSKLAFGAHTGIRDGVLTVNREELTALLKQDERLD
SVEIDAAHPGESVRIMPVKDAIEPRCKLEGPGEVFPGWIGDVENAGEGKTLVLTGMAV
LTTGRVVAPQEGIVDMSGPGADYTPFAKTCNLTLALSAAADLEPHQCEACFRLAGLRA
AHYLAAACKEATADKVEEFDFPPFSEAMHAHPGLPRVAYIYMLQSQGLLHDTWVYGVD
AKRILPTMISPTEVMDGAIISGNCVSACDKNNTYVHLNNPVIRSLYDHHGKDLNFVGV
IITNENVTLADKKRSSSYAVKLARMMGVDAVVISEEGFGNPDADLIMNCRKSEQAGIR
TVLITDEFAGRDGSSQSLADSCPEGDACVTAGNANEVIILPPMQKIIGDQAPAETIAG
GFFGSVREDGSLEVELQAILGATNELGFNRIGGRTL"
misc_feature 144921..146201
/locus_tag="Ddes_0112"
/note="Glycine/sarcosine/betaine reductase component B
subunits; Region: Gly_reductase; pfam09338"
/db_xref="CDD:150114"
gene 146239..147543
/locus_tag="Ddes_0113"
/db_xref="GeneID:7283765"
CDS 146239..147543
/locus_tag="Ddes_0113"
/EC_number="1.21.4.3"
/inference="protein motif:TFAM:TIGR01918"
/note="KEGG: aoe:Clos_0958 selenoprotein B;
Contains selenocysteine;
TIGRFAM: glycine reductase, selenoprotein B; selenoprotein
B, glycine/betaine/sarcosine/D-proline reductase family;
PFAM: Selenoprotein B glycine/betaine/sarcosine/D-proline
reductase"
/codon_start=1
/transl_except=(pos:147283..147285,aa:Sec)
/transl_table=11
/product="glycine/betaine/sarcosine/D-proline reductase
family selenoprotein B"
/protein_id="YP_002478711.1"
/db_xref="GI:220903399"
/db_xref="InterPro:IPR010186"
/db_xref="InterPro:IPR010187"
/db_xref="GeneID:7283765"
/translation="MAYKLVHYINQFFAGIGGEDKADVSPEVREGIVGPGMAFKAALG
DQAEIVATFICGDNYCANNLDAVAARMVETVKSFGADGLIAGPAFNAGRYGTACGAVC
AAVNKQLGLPVVSGMYRESPGVDLYRKEVTIVETADSARGMGKAVPAMAAVVLKLLRG
EEIADPAAEGVFPKGIRKNMFYDEPGAERAVRMLIKKVGGEEFKTEYAMPIFDRVEPR
PAIADMSRATIAVVTSGGIVPEGNPDHIAASSAQNFGAYSIEGVTDLEKGRYLTAHGG
YDQTYANQDPDRVLPIDVLRDLEKEGRIGKLYNVFYTTVGNGTSVANSRKFGTEIGSQ
LKAAHVDGVILTSTUGTCTRCGATLAKAIEEAADVPVVHMCTIVPISLSIGANRIVPT
VSIPHPLGNPELSAAEEKHLRRELVLKALQALSTGVDGQTVF"
misc_feature 146248..147540
/locus_tag="Ddes_0113"
/note="glycine reductase, selenoprotein B; Region:
gly_red_sel_B; TIGR01917"
/db_xref="CDD:130972"
misc_feature 146248..147540
/locus_tag="Ddes_0113"
/note="selenoprotein B,
glycine/betaine/sarcosine/D-proline reductase family;
Region: various_sel_PB; TIGR01918"
/db_xref="CDD:130973"
gene 147790..148704
/locus_tag="Ddes_0114"
/db_xref="GeneID:7283766"
CDS 147790..148704
/locus_tag="Ddes_0114"
/EC_number="1.8.1.9"
/inference="protein motif:TFAM:TIGR01292"
/note="KEGG: pth:PTH_1417 thioredoxin reductase;
TIGRFAM: thioredoxin reductase;
PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; FAD dependent oxidoreductase"
/codon_start=1
/transl_table=11
/product="thioredoxin reductase"
/protein_id="YP_002478712.1"
/db_xref="GI:220903400"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000759"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR005982"
/db_xref="InterPro:IPR006076"
/db_xref="InterPro:IPR008255"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:7283766"
/translation="MEKRELVIIGAGPAGLSAAIYGKRAGLDTLVLEKGRPGGQILTT
SRVENYPGIIDGTGTGLADAFRAHAEFFKAEFRSVSVQKLEVRGNEKIITLKDGTEIA
AGAVIVASGAYFRKQGCPGEKKYTGMGVSYCAVCDAAFFEDLEVAVIGGGNTAVEEAC
YLTGFASRVYLIHRRDEFRADRLVVEHALANPKIVPVMDSVLESIEGSDMVEKIMVRN
VKTNKMRQIDLSGVFIFIGTLPNAEFLHGLLQTDAGGWIITDDKLQTSVPGIFAAGDV
RNTSLRQVVTAAGDGARAAMAAYAYLQH"
misc_feature 147805..148647
/locus_tag="Ddes_0114"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:200090"
misc_feature 147811..148008
/locus_tag="Ddes_0114"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
misc_feature 148225..148443
/locus_tag="Ddes_0114"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 148840..150375
/locus_tag="Ddes_0115"
/db_xref="GeneID:7283767"
CDS 148840..150375
/locus_tag="Ddes_0115"
/EC_number="1.21.4.4"
/inference="protein motif:PRIAM:1.21.4.4"
/note="KEGG: chy:CHY_2394 glycine reductase complex,
protein C"
/codon_start=1
/transl_table=11
/product="betaine reductase"
/protein_id="YP_002478713.1"
/db_xref="GI:220903401"
/db_xref="GeneID:7283767"
/translation="MKTVGIKAAAYCLNFAPELALHHGGTPAQERRAKPDSEFLRELP
KHAQTFEQAASYAPNKTYVGAMSVDELAAAPAPWIDNLGEPQRFGKFGEIMPEDEFIG
LMDICDVFDLIWLEEGFATAVAARLAQNPVMGEKQMARLEKGRPEAELLAAIEKHHAL
PLYFAGKVVGCCRRAHDTDENLEAGIMLENLASKASAVLCLLHLIKNAGMAPADVDFV
VECSEEAVGDAMQRGGGNMAKAVAEIAECVNASGFDVRGFCAAPVAAMITAAGMVASG
VRPNVVVISGGSVPKLYMNARDHIKKGVVPLENCVGSFALLLVPDDGQTPVMRLEGIG
KHTVGAGASPQAITTALTFDPLSRVGLKLTDVDKYAPELHNAEITLPAGAGNVPEANY
KMIAALAVMKGQIERADIQKFVDERGMPGFAHTQGHIPSGVPYVGHALEALKEGRIRR
AMIIGKGSLFLGRLTNLADGVSFIMEAPGSAPAAQDVSQADVTEMLLGTLGDLAANLQ
KGR"
misc_feature 149386..150219
/locus_tag="Ddes_0115"
/note="Condensing enzymes; Family of enzymes that catalyze
a (decarboxylating or non-decarboxylating) Claisen-like
condensation reaction. Members are share strong structural
similarity, and are involved in the synthesis and
degradation of fatty acids, and the...; Region:
cond_enzymes; cl09938"
/db_xref="CDD:199422"
misc_feature order(149614..149616,150121..150123)
/locus_tag="Ddes_0115"
/note="active site"
/db_xref="CDD:73194"
gene 150386..151552
/locus_tag="Ddes_0116"
/db_xref="GeneID:7283768"
CDS 150386..151552
/locus_tag="Ddes_0116"
/EC_number="1.21.4.2"
/inference="protein motif:PRIAM:1.21.4.2"
/note="PFAM: fatty acid synthesis plsX protein;
KEGG: cpo:COPRO5265_0228 fatty acid/phospholipid synthesis
protein PlsX"
/codon_start=1
/transl_table=11
/product="glycine reductase"
/protein_id="YP_002478714.1"
/db_xref="GI:220903402"
/db_xref="InterPro:IPR003664"
/db_xref="GeneID:7283768"
/translation="MASQNDKRAILGKALEDLVTRARSGREPCRIGLMAAGGEHSDME
FITAAAAAMKEDAALTVVGVGPRPAGLLPAGMDWIETGCEGGELAAGMEKALDSGHIQ
GAVALHYPFPLGVSTVGRILTPALGRAMFVACTTGMSAAKRQQALLRNAVLGIAVAKA
SGLAAPAVGVLNVDAAPQVLRALNRMAEKGYALNLGQSVRGDGGSLLRGNDLLRGAVD
VCVTDTLTGNVLMKLFGAFTSGGAYETTGWGYGPSVGEGWNKVVSIISRASGSPVIAN
ALAYTAAAVRGRLPVLVAEELRMARAAGLDDELAAFEKSDAAPAVQVSPPPVEPTDEE
IHGIDVLDLEQAVRCLWKEKIYAEAAMGCTGPVVKLASARLEAARKILADAGYI"
misc_feature 150473..151492
/locus_tag="Ddes_0116"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 151657..151974
/locus_tag="Ddes_0117"
/db_xref="GeneID:7283769"
CDS 151657..151974
/locus_tag="Ddes_0117"
/inference="protein motif:PFAM:PF00085"
/note="PFAM: Thioredoxin domain;
KEGG: sth:STH2871 thioredoxin"
/codon_start=1
/transl_table=11
/product="thioredoxin domain-containing protein"
/protein_id="YP_002478715.1"
/db_xref="GI:220903403"
/db_xref="InterPro:IPR006662"
/db_xref="InterPro:IPR013766"
/db_xref="GeneID:7283769"
/translation="MIIVDKENFEAEVQQSAMPCVVDLWGPQCGPCLALMPAVEELAA
TYEGKVKFCKLNVAENRRLVIGLRVMAVPTILFYKGGECVARLTGDAVSVESIKAEAD
KLL"
misc_feature 151675..151953
/locus_tag="Ddes_0117"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(151741..151743,151750..151752)
/locus_tag="Ddes_0117"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene 152085..152561
/locus_tag="Ddes_0118"
/db_xref="GeneID:7283770"
CDS 152085..152561
/locus_tag="Ddes_0118"
/EC_number="1.21.4.2"
/inference="protein motif:PRIAM:1.21.4.2"
/note="GrdA accepts a carboxymethylselenoether from
protein B and transfers it to protein C forming a protein
C-bound acetyl-thioester; oxidized GrdA is then reduced by
thioredoxin"
/codon_start=1
/transl_except=(pos:152214..152216,aa:Sec)
/transl_table=11
/product="glycine/sarcosine/betaine reductase complex
protein A"
/protein_id="YP_002478716.1"
/db_xref="GI:220903404"
/db_xref="InterPro:IPR006812"
/db_xref="GeneID:7283770"
/translation="MGKLTGKKLLLLGERDGVPGPAMADVFANSGAEILFSATECFVU
TAAGAMDLENQQRVKDAAEKFGGENVVVILGSSDPEGAEIYAETVTMGDPTFAGPLAG
VPLGLCVYHILEPEIKEEADPAKWEEQISMMEMVLNVDALVESVRKMREANSKFSL"
misc_feature 152124..152546
/locus_tag="Ddes_0118"
/note="glycine/sarcosine/betaine reductase complex protein
A; Reviewed; Region: PRK13265"
/db_xref="CDD:183931"
gene 153006..154763
/locus_tag="Ddes_0119"
/db_xref="GeneID:7283771"
CDS 153006..154763
/locus_tag="Ddes_0119"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: chemotaxis sensory transducer;
KEGG: dvl:Dvul_0942 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478717.1"
/db_xref="GI:220903405"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:7283771"
/translation="MNSFSLRGKFILTITIGAVALAAMFSFSLDAVSTLDRSFLQMRN
VDVVGKITSLEIGKDINYVSRLTRDAMLGGNIEKDIKQQSDIAKRNEERFQQLAAMPF
SGEEKKIIDEARTAAINFIANGRDVLLPLQSVPVDERYKGYKEYAKMVTPYAMAYRDQ
GGLFDKAMNARFDAAMQQMQEQLDHSRTTMWIILAVSMLAIYGVGFASTSRDLNVMRE
CIAFAGELGSETLTRRLDTSKRSSITPLAKALNATADNLDSFRAETLKATAEAQKERD
EAQGFMLQAQAAKEEAEKAKVEGMLYAASQLEAVVQTLNTTTDNLSSLIHNANNGTTR
QADRMRETASAMEQMNASMLEVAQSSSHAANTADQTRSKAQDGSTSVTELLDNIREVQ
QQAGEMKDGMAGLGVQAEAIGKVLNVIADIADQTNLLALNAAIEAARAGDAGRGFAVV
ADEVRKLAEKTMTATREVGEAIGGIQSGTTHTIDVVTRTVSRIQGASQLADRSGTALA
EIVSMVDLTTDQVRAIAAASEEQSAASSEINRSLDEVDRISGENASFMHQSADSIMEL
SRQAGVLQDLISQMKQGGA"
sig_peptide 153006..153101
/locus_tag="Ddes_0119"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.968 at
residue 32"
misc_feature 153978..154748
/locus_tag="Ddes_0119"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 154044..154685
/locus_tag="Ddes_0119"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(154068..154073,154080..154085,154092..154094,
154101..154106,154110..154115,154122..154124,
154131..154136,154143..154145,154152..154157,
154164..154169,154176..154178,154185..154190,
154194..154199,154209..154211,154215..154220,
154227..154229,154236..154241,154248..154253,
154260..154262,154269..154271,154278..154283,
154290..154292,154302..154304,154311..154313,
154332..154334,154344..154346,154353..154355,
154362..154367,154374..154376,154383..154388,
154395..154400,154404..154409,154416..154421,
154458..154463,154470..154472,154479..154484,
154491..154493,154500..154505,154509..154514,
154521..154526,154533..154535,154542..154547,
154554..154556,154563..154568,154614..154619,
154626..154631,154635..154640,154647..154649,
154656..154661,154668..154670,154677..154682)
/locus_tag="Ddes_0119"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 154278..154379
/locus_tag="Ddes_0119"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 155018..156361
/locus_tag="Ddes_0120"
/db_xref="GeneID:7283772"
CDS 155018..156361
/locus_tag="Ddes_0120"
/EC_number="3.1.5.1"
/inference="protein motif:TFAM:TIGR01353"
/note="KEGG: csa:Csal_0252 deoxyguanosinetriphosphate
triphosphohydrolase-like protein;
TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase;
PFAM: metal-dependent phosphohydrolase HD sub domain;
SMART: metal-dependent phosphohydrolase HD region"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate triphosphohydrolase"
/protein_id="YP_002478718.1"
/db_xref="GI:220903406"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006261"
/db_xref="InterPro:IPR006674"
/db_xref="GeneID:7283772"
/translation="MSKHTEQWGRLLAPYRRTRQGKDLVTLDLVRNPFVQDYDRIIFS
SSFRRLAKKTQVHPLVRNDHIHNRLTHSLEVSCVGRSLALLAGQGLAERGQLPQGYSP
EHLGQIIQAACLAHDIGNPPFGHAGEEAIRDWFKDTGHTEHYFKELRPAERADFEAFD
GNAQGFRVVNTLENNKDSGGFRLTFPVLASLVKYPCSAHEALGRSSGKFNYYTAEQEI
FADIFSTLGLMHDGRARRHPLSYLLEAADDICYRIIDMEDARELRIITYQDIKDAMAP
LLSDSDMDGGRLADMDSDRRRSGMLRTKAMGRSIPSVVQTFLDNYEDIMNGTLQGDLL
KHARQDVADFMAAAKTVFNCKIMNNPQKTALEIGTYTLYKRLLDVFIPACFNFSKKNA
MSYQETRALTLMGTNAPAEGECLYTAYLRVLDFVSGMTDDYATFISQQFSGTAAS"
misc_feature 155036..156346
/locus_tag="Ddes_0120"
/note="deoxyguanosinetriphosphate triphosphohydrolase-like
protein; Provisional; Region: PRK01096"
/db_xref="CDD:179219"
misc_feature 155213..>155494
/locus_tag="Ddes_0120"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(155228..155230,155363..155368)
/locus_tag="Ddes_0120"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 155366..155368
/locus_tag="Ddes_0120"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 156445..156714
/locus_tag="Ddes_0121"
/db_xref="GeneID:7283773"
CDS 156445..156714
/locus_tag="Ddes_0121"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478719.1"
/db_xref="GI:220903407"
/db_xref="GeneID:7283773"
/translation="MGKSLAFGKGRRDSFSQGRLFSLIVRRADGLNSENKKTAIPAGS
QNFSITTKLFSLSPTVQAAQLTDEEEVLVARRIPKKALGYRDPRT"
gene complement(156734..157333)
/locus_tag="Ddes_0122"
/db_xref="GeneID:7283774"
CDS complement(156734..157333)
/locus_tag="Ddes_0122"
/inference="protein motif:COG:COG0529"
/note="KEGG: afu:AF0288 adenylylsulfate kinase"
/codon_start=1
/transl_table=11
/product="adenylylsulfate kinase-like protein"
/protein_id="YP_002478720.1"
/db_xref="GI:220903408"
/db_xref="GeneID:7283774"
/translation="MTPVIWLLGLSGSGKTTLGSLVRLFLEGQGVETEFIDEDHFCRR
AGLDGIAPGERITAINALRDQALQHHAQGRVCVVAATTPYSGMRQKNRENLPLYHEVW
VRCSLQTLVNRDTRGLYAMAGQAHVPGLSGLTDRFDEPLHADHIIDTDRHDLAESYLI
LRNLALEALSMARRWNRLSHGLPAAVLPPTPARERCIAL"
misc_feature complement(156833..157324)
/locus_tag="Ddes_0122"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(order(157283..157294,157307..157309))
/locus_tag="Ddes_0122"
/note="active site"
/db_xref="CDD:73295"
gene complement(157572..157648)
/locus_tag="Ddes_R0002"
/note="tRNA-Asp1"
/db_xref="GeneID:7283775"
tRNA complement(157572..157648)
/locus_tag="Ddes_R0002"
/product="tRNA-Asp"
/db_xref="GeneID:7283775"
gene complement(157659..157734)
/locus_tag="Ddes_R0003"
/note="tRNA-Val3"
/db_xref="GeneID:7283776"
tRNA complement(157659..157734)
/locus_tag="Ddes_R0003"
/product="tRNA-Val"
/db_xref="GeneID:7283776"
gene 158014..159072
/locus_tag="Ddes_0123"
/db_xref="GeneID:7283777"
CDS 158014..159072
/locus_tag="Ddes_0123"
/inference="protein motif:PFAM:PF01522"
/note="PFAM: polysaccharide deacetylase;
KEGG: dvl:Dvul_2705 polysaccharide deacetylase"
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase"
/protein_id="YP_002478721.1"
/db_xref="GI:220903409"
/db_xref="InterPro:IPR002509"
/db_xref="GeneID:7283777"
/translation="MKPLWIRLWAIFFFGLAVCAAPGVQARVVDGGSIMDQHMRENLC
ALTFDDGPSANTPQLLDMLSEYGIPATFFLLGKQAERHPDLVRRILAEGHEVGNHSYS
HPNLRMLSPEKKLQEIGQTDAILRSLGASPSFLRPPYGAYDNHTVSVAESLGLGIMLW
SLDSRDWKSLPANYATLRSTRGTVYDTGALRGIFLFHDTHRRTVEDLPRIIRDLRAGG
CQRFVTVSDYLDGLLDPEPGILMTRRPTDSAQPAVADKKPGRLKEQFQEMPPESYPAG
TAALPLARTSRPWRSGSGAAETGRPPAAEVDRQAAGENSGPGHDSSVQPTTGAPEAGL
PLGSSVFTPGAAAGSADA"
sig_peptide 158014..158094
/locus_tag="Ddes_0123"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.969 at
residue 27"
misc_feature 158137..158658
/locus_tag="Ddes_0123"
/note="Catalytic NodB homology domain of rhizobial
NodB-like proteins; Region: CE4_NodB_like_6s_7s; cd10917"
/db_xref="CDD:213022"
misc_feature <158146..158703
/locus_tag="Ddes_0123"
/note="Predicted xylanase/chitin deacetylase [Carbohydrate
transport and metabolism]; Region: CDA1; COG0726"
/db_xref="CDD:31070"
misc_feature order(158152..158163,158308..158325,158419..158421,
158425..158430,158491..158493,158509..158514,
158596..158598,158602..158604)
/locus_tag="Ddes_0123"
/note="NodB motif; other site"
/db_xref="CDD:213022"
misc_feature order(158158..158163,158308..158310,158320..158322,
158425..158433,158491..158493,158596..158598,
158602..158604)
/locus_tag="Ddes_0123"
/note="active site"
/db_xref="CDD:213022"
misc_feature order(158158..158160,158419..158421,158509..158511,
158602..158604)
/locus_tag="Ddes_0123"
/note="catalytic site [active]"
/db_xref="CDD:213022"
misc_feature order(158161..158163,158308..158310,158320..158322)
/locus_tag="Ddes_0123"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:213022"
gene complement(159509..160729)
/locus_tag="Ddes_0124"
/db_xref="GeneID:7283778"
CDS complement(159509..160729)
/locus_tag="Ddes_0124"
/inference="protein motif:TFAM:TIGR01047"
/note="TIGRFAM: carboxynorspermidine decarboxylase;
PFAM: Orn/DAP/Arg decarboxylase 2;
KEGG: dvu:DVU0419 carboxynorspermidine decarboxylase"
/codon_start=1
/transl_table=11
/product="carboxynorspermidine decarboxylase"
/protein_id="YP_002478722.1"
/db_xref="GI:220903410"
/db_xref="InterPro:IPR000183"
/db_xref="InterPro:IPR005730"
/db_xref="GeneID:7283778"
/translation="MHCQHLLFDPARIPSPCFVLDENQLSANAAVLNSVQERTGAKIL
LALKGYAAWGTFPLLSRFKGHGPLWGACASSVDEARLAREEFGGEVHAFAAGWNRREM
AELLTLTDHIVFNSTAQWREFAPAIAMWNKGRCPDRQIQCGLRINPEHSEGAVEIYNP
CAPGSRLGIRRKHFDPTAMTGISGLHFHTLCEQGADALERTLAAVESHFGQWLPQCRW
INMGGGHHITKPGYDLDLLCRLLTQWRDRYQAQIYLEPGEAVALDAGWLVATVLDVIE
ADMPIAILDIGIPCHMPDVIEMPYRPRVRYEHDGAAVLAGEAGQKAWTCRLAGKSCLA
GDVAGEYSFDAPLKPGQRLVFEDMAIYSMVKTTTFNGLRLPSIGICGPDAAGDMYFRM
LREFGYANFKNRLS"
misc_feature complement(159515..160693)
/locus_tag="Ddes_0124"
/note="carboxynorspermidine decarboxylase; Region: nspC;
TIGR01047"
/db_xref="CDD:188104"
misc_feature complement(159590..160687)
/locus_tag="Ddes_0124"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Carboxynorspermidine Decarboxylase; Region:
PLPDE_III_CANSDC; cd06829"
/db_xref="CDD:143502"
misc_feature complement(order(159617..159625,159632..159640,
159722..159724,159731..159739,159743..159745,
159866..159868,159875..159877,159881..159883,
159887..159889,159905..159916,160244..160255,
160364..160366,160376..160378,160385..160387,
160433..160435,160496..160501,160505..160510,
160586..160588,160685..160687))
/locus_tag="Ddes_0124"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143502"
misc_feature complement(order(159623..159625,159635..159637,
159647..159649,159731..159736,159956..159967,
160058..160063,160157..160159,160166..160168,
160295..160297,160448..160450,160514..160516,
160586..160588,160592..160594))
/locus_tag="Ddes_0124"
/note="active site"
/db_xref="CDD:143502"
misc_feature complement(order(159647..159649,159734..159736,
159956..159967,160058..160063,160157..160159,
160166..160168,160295..160297,160448..160450,
160514..160516,160586..160588,160592..160594))
/locus_tag="Ddes_0124"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143502"
misc_feature complement(order(159734..159736,160586..160588))
/locus_tag="Ddes_0124"
/note="catalytic residues [active]"
/db_xref="CDD:143502"
misc_feature complement(order(159623..159625,159635..159637,
159647..159649,159731..159736,159956..159958,
160157..160159))
/locus_tag="Ddes_0124"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143502"
gene complement(161550..162761)
/locus_tag="Ddes_0125"
/db_xref="GeneID:7283779"
CDS complement(161550..162761)
/locus_tag="Ddes_0125"
/inference="protein motif:PFAM:PF03435"
/note="PFAM: Saccharopine dehydrogenase;
KEGG: dvl:Dvul_2516 saccharopine dehydrogenase"
/codon_start=1
/transl_table=11
/product="saccharopine dehydrogenase"
/protein_id="YP_002478723.1"
/db_xref="GI:220903411"
/db_xref="InterPro:IPR005097"
/db_xref="GeneID:7283779"
/translation="MANILIIGAGGVGSVVVHKCAQVAANGGVFNKITLASRTVSRCD
AIAQSVKARYGVDVATAKVDADNVPELCQLIRSVKPDLVCNVALPYQDLHIMDACLEC
GVHYVDTANYEPLDTAKFEYKWQWAYADRFREAGLTALLGSGFDPGVTNVFAAWVMKH
ELDEVHVLDIIDCNAGDHGQPFATNFNPEINIREVTARGRYWERGEWVETDPLSWSMN
FDFPSGIGSKKCFLMYHEELESLVKNLKGLRRARFWMTFSDNYLNHLKVLGNVGMTRI
DPVNFQGQDIVPIQFLSKLLPDPASLGPLTKGKTCIGDLMRGVKDGKEKTVYIYNICD
HEACYAEVGSQAISYTTGVPAMIGSKMVAEGVWRKPGVWNMEQFDPDPFLKDLGTYGL
PWQSVDVTGKI"
misc_feature complement(161559..162761)
/locus_tag="Ddes_0125"
/note="Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism]; Region: LYS9;
COG1748"
/db_xref="CDD:31934"
misc_feature complement(<162513..162761)
/locus_tag="Ddes_0125"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(162945..164366)
/locus_tag="Ddes_0126"
/db_xref="GeneID:7283780"
CDS complement(162945..164366)
/locus_tag="Ddes_0126"
/inference="protein motif:PFAM:PF00850"
/note="PFAM: histone deacetylase superfamily;
KEGG: dvl:Dvul_1093 histone deacetylase superfamily
protein"
/codon_start=1
/transl_table=11
/product="histone deacetylase superfamily protein"
/protein_id="YP_002478724.1"
/db_xref="GI:220903412"
/db_xref="InterPro:IPR000286"
/db_xref="GeneID:7283780"
/translation="MTEQRAGQRPAAHSFDQAGAKAALRAARRLGVVFFPAFDWAISP
THPEREERLLYTRDQLVEEGLFDIPGITEYRPAFASHAQLERAHFCLPTTSAVSTDSH
LAAAGGAIRAARLVLDGHEDRAFALVRPPGHHAMRVVHGNRGFCNINNEAVMAEYIRD
HYPHPDGRPLRIAIVDTDVHHGDGTQDVFWNDPHTLFISLHQDGRTLYPGTGFLHECG
GPGALGRTINIPLPPETCDAGYLYAVEHAVLPILEDFKPDFIINSAGQDNHFTDPLAN
MKLSAQGYAALTRLLNPHVAVLEGGYAIRGALPYVNLGICLALAGIDAGDVREPGWSP
ESTLQSASVGQYIARLCEEVRDCYFKPPATPSEGQAEGQGQDRWWVRQKHVFYDTDML
SEGQNEAWRLCPDCSGLGRIETASERVARSLCLLVPRHACPACRERGRDLASQARRAG
RHAHVLLLDGDLIAPDTSREGPR"
misc_feature complement(163377..164237)
/locus_tag="Ddes_0126"
/note="Deacetylases, including yeast histone deacetylase
and acetoin utilization protein [Chromatin structure and
dynamics / Secondary metabolites biosynthesis, transport,
and catabolism]; Region: AcuC; COG0123"
/db_xref="CDD:30472"
misc_feature complement(163407..164231)
/locus_tag="Ddes_0126"
/note="Histone deacetylases and histone-like deacetylases,
classII; Region: HDAC_classII; cd09992"
/db_xref="CDD:212518"
misc_feature complement(order(163467..163469,163566..163568,
163827..163829,163833..163835,163932..163937,
163965..163970))
/locus_tag="Ddes_0126"
/note="active site"
/db_xref="CDD:212518"
misc_feature complement(order(163566..163568,163827..163829,
163833..163835))
/locus_tag="Ddes_0126"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:212518"
gene complement(164359..164700)
/locus_tag="Ddes_0127"
/db_xref="GeneID:7283781"
CDS complement(164359..164700)
/locus_tag="Ddes_0127"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478725.1"
/db_xref="GI:220903413"
/db_xref="GeneID:7283781"
/translation="MQEYYDLYVEGTKLNFVPRKNGAAGFESALPEPPANHVAAGILG
DPELMYCVAFRKEDGPGGVFAMYDEDSLLFVAVAESNLAYSLGLSQMGRMVTYARYGA
DIFDALDENDD"
gene complement(164931..165584)
/locus_tag="Ddes_0128"
/db_xref="GeneID:7283782"
CDS complement(164931..165584)
/locus_tag="Ddes_0128"
/EC_number="2.7.4.9"
/inference="protein motif:PRIAM:2.7.4.9"
/note="PFAM: thymidylate kinase;
KEGG: dvu:DVU2140 thymidylate kinase"
/codon_start=1
/transl_table=11
/product="dTMP kinase"
/protein_id="YP_002478726.1"
/db_xref="GI:220903414"
/db_xref="InterPro:IPR000062"
/db_xref="GeneID:7283782"
/translation="MFVTFEGIEGAGKSTAIDYLSDYLQARGHDPVLTREPGGSALGR
RLRALLLDVRTGGLASRAELFLFLADRAQHVTEVIRPALEAGQVVLCDRFTDSTLAYQ
GYGRGLDTEYLRSLNTAATGGLEPDLTLLLDLPVRCGLERAGERNRSAGMVIAEGRFD
SESLDFHERVRRGYRALAEEEPERFAIIDASQPPEDVVLQCRSAIEAYLRRRGRGLD"
misc_feature complement(164955..165584)
/locus_tag="Ddes_0128"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:179089"
misc_feature complement(164964..165584)
/locus_tag="Ddes_0128"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:30190"
misc_feature complement(order(165147..165149,165282..165284,
165306..165311,165372..165374,165384..165386,
165543..165545))
/locus_tag="Ddes_0128"
/note="TMP-binding site; other site"
/db_xref="CDD:30190"
misc_feature complement(order(165015..165017,165159..165161,
165540..165542))
/locus_tag="Ddes_0128"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30190"
gene complement(165560..166591)
/locus_tag="Ddes_0129"
/db_xref="GeneID:7283783"
CDS complement(165560..166591)
/locus_tag="Ddes_0129"
/inference="protein motif:TFAM:TIGR00277"
/note="KEGG: dvl:Dvul_1091 metal dependent
phosphohydrolase;
TIGRFAM: metal dependent phophohydrolase;
PFAM: nucleic acid binding OB-fold tRNA/helicase-type;
metal-dependent phosphohydrolase HD sub domain;
SMART: metal-dependent phosphohydrolase HD region"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_002478727.1"
/db_xref="GI:220903415"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR006675"
/db_xref="GeneID:7283783"
/translation="MEKGCYVKDISPTSEARGLFAVSQAAQGQSRNGPYWRLTLVDAS
GSLEAKIWHPLSADFSEIPAGALAWVEGRAGLYRDQVQLTVEHMRLLDAAESAAVDQT
ALMPASPYPLDDMLHELDGAIKAEFTHAPWRKLVQGFFSNAEMRAAFRVCPAAKGVHH
AYVGGLLEHTLSVFNLCRRIADQYPELDRQTLLAGALFHDIGKLREFSGGLANDYTDE
GRLLGHLMLGIEMLAPFMARSGLEEPLQRHLKHLILSHHGELQFGAVRPPHTPEAMAL
HYADNLDAKMAQCRGLFAQMEEDGQDWTPWQATLGRPVHRAARTPEKAAPATRKKAVK
EECLSLLKV"
misc_feature complement(165674..166543)
/locus_tag="Ddes_0129"
/note="Predicted HD-superfamily hydrolase [General
function prediction only]; Region: COG3481"
/db_xref="CDD:33284"
misc_feature complement(166307..166540)
/locus_tag="Ddes_0129"
/note="YhaM_OBF_like: A subfamily of OB folds similar to
that found in Bacillus subtilis YhaM and Staphylococcus
aureus cmp-binding factor-1 (SaCBF1). Both these proteins
are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+
for activity and is inactive in...; Region: YhaM_OBF_like;
cd04492"
/db_xref="CDD:72964"
misc_feature complement(order(166340..166348,166367..166375,
166394..166396,166436..166438,166442..166450,
166466..166468,166472..166483,166520..166528))
/locus_tag="Ddes_0129"
/note="generic binding surface I; other site"
/db_xref="CDD:72964"
misc_feature complement(order(166325..166327,166379..166381,
166385..166387,166391..166393))
/locus_tag="Ddes_0129"
/note="generic binding surface II; other site"
/db_xref="CDD:72964"
misc_feature complement(165695..166102)
/locus_tag="Ddes_0129"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(165752..165754,165992..165997,
166085..166087))
/locus_tag="Ddes_0129"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(165992..165994)
/locus_tag="Ddes_0129"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 166710..167483
/locus_tag="Ddes_0130"
/db_xref="GeneID:7283784"
CDS 166710..167483
/locus_tag="Ddes_0130"
/EC_number="3.1.3.5"
/inference="protein motif:TFAM:TIGR00087"
/note="KEGG: dvl:Dvul_1090 stationary-phase survival
protein SurE;
TIGRFAM: stationary-phase survival protein SurE;
PFAM: Survival protein SurE"
/codon_start=1
/transl_table=11
/product="stationary-phase survival protein SurE"
/protein_id="YP_002478728.1"
/db_xref="GI:220903416"
/db_xref="InterPro:IPR002828"
/db_xref="GeneID:7283784"
/translation="MNVLLTNDDGIRAKGLRALYAALREAGHTVYVVAPMSQQSGVGH
SLTVFEPVRATVIEEPDFTGTGVYGTPTDCVKLALGRLLPHKPDLVMSGINAGANVGP
DILYSGTVGAATEAAHEELPSMAVSFDSFSHNTAPDMDLMPQARHAVNLAERMNWSAV
GRRRVININYPACPLDEAQDLRVCPQTSAVWKNVYIEREDPRGAPYWWLEGEIPPASI
EPGSDKDLLNRGHITLTPLCFDFTDHEGLTALKCMKLQG"
misc_feature 166710..167462
/locus_tag="Ddes_0130"
/note="5'(3')-nucleotidase/polyphosphatase; Provisional;
Region: surE; PRK00346"
/db_xref="CDD:178982"
gene 167914..168840
/locus_tag="Ddes_0131"
/db_xref="GeneID:7283785"
CDS 167914..168840
/locus_tag="Ddes_0131"
/EC_number="4.1.2.13"
/inference="protein motif:TFAM:TIGR01859"
/note="KEGG: dvl:Dvul_1089 fructose-1,6-bisphosphate
aldolase, class II;
TIGRFAM: ketose-bisphosphate aldolase;
fructose-1,6-bisphosphate aldolase, class II;
PFAM: ketose-bisphosphate aldolase class-II"
/codon_start=1
/transl_table=11
/product="fructose-1,6-bisphosphate aldolase"
/protein_id="YP_002478729.1"
/db_xref="GI:220903417"
/db_xref="InterPro:IPR000771"
/db_xref="InterPro:IPR011289"
/db_xref="GeneID:7283785"
/translation="MPLISPKEMFAAAYAGGYAIGAFNVNNMEIIQGIMGAASEEKSP
VILQVSAGARKYAGQPYIMKLVEAALAVDASVPVAVHLDHGPSFEMCRECIDGGFTSV
MIDGSHLPYEENIALTKQVVDYARPRGVWVEAELGKLAGIEEHVQSDEHVYTDPDEAV
DFVERTGCDSLAIAIGTSHGAYKFKGEPKLDFERLEAICRKLPDYPLVLHGASSVPQE
FVDLCNQYGGNVGGARGVPEDMLRRAAGMGVCKINVDTDIRLAVTACIRQYLAEHPEE
FDPRSYLKPAREAVRQMVAHKIRTVMGSSGKA"
misc_feature 167932..168837
/locus_tag="Ddes_0131"
/note="hypothetical protein; Provisional; Region:
PRK08185"
/db_xref="CDD:181275"
misc_feature 167932..168831
/locus_tag="Ddes_0131"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:29573"
misc_feature order(167992..168000,168007..168009,168067..168069,
168076..168084,168094..168096,168106..168108,
168115..168120,168340..168342,168679..168684,
168688..168693,168700..168702,168712..168714,
168721..168723)
/locus_tag="Ddes_0131"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29573"
misc_feature order(168160..168165,168445..168453,168457..168459,
168541..168546,168550..168552,168670..168672,
168676..168681)
/locus_tag="Ddes_0131"
/note="active site"
/db_xref="CDD:29573"
misc_feature order(168163..168165,168448..168450,168541..168543)
/locus_tag="Ddes_0131"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29573"
misc_feature order(168445..168447,168451..168453,168457..168459,
168544..168546,168550..168552)
/locus_tag="Ddes_0131"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:29573"
gene 168871..169875
/locus_tag="Ddes_0132"
/db_xref="GeneID:7283786"
CDS 168871..169875
/locus_tag="Ddes_0132"
/EC_number="1.2.1.12"
/inference="protein motif:TFAM:TIGR01534"
/note="KEGG: dvl:Dvul_1088 glyceraldehyde-3-phosphate
dehydrogenase, type I;
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I;
PFAM: glyceraldehyde 3-phosphate dehydrogenase"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase, type
I"
/protein_id="YP_002478730.1"
/db_xref="GI:220903418"
/db_xref="InterPro:IPR000173"
/db_xref="InterPro:IPR006424"
/db_xref="GeneID:7283786"
/translation="MPVKLGLNGFGRIGRYLLRLLADDQDLQIVAINARADNAALAYL
FKYDSTYGNFAGTVDHDENGIIVNGRHIAVTRCKPGEWEWKRLGVTIAVETTGTIKDG
EGLAMHLACGAEKVVISAPAKDVDAMIVMGVNDHVYDCARHKVISAASCTTNCLAPVV
KVLHEKFGIRHGLMTTIHSYTMSQRILDGSHKDWRRGRSAAVSMVPSSTGAAKAVGVV
MPELEGKLNGMSVRVPTFACSLVDLTCEVERSCDAAAVNAALKAASEGVMGPNMGFSE
EPLVSIDYRGSTHGGVVDALSTQVLDGSMVKVLIWYDNEAGFTNQLLRLLRMVGSRCR
"
misc_feature 168877..169320
/locus_tag="Ddes_0132"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; pfam00044"
/db_xref="CDD:200954"
misc_feature 168880..169842
/locus_tag="Ddes_0132"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:211668"
misc_feature 169336..169806
/locus_tag="Ddes_0132"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene complement(170136..171086)
/locus_tag="Ddes_0133"
/db_xref="GeneID:7283787"
CDS complement(170136..171086)
/locus_tag="Ddes_0133"
/inference="protein motif:PFAM:PF08338"
/note="PFAM: NAD-dependent epimerase/dehydratase; domain
of unknown function DUF1731;
KEGG: lip:LI0081 nucleoside-diphosphate sugar epimerase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478731.1"
/db_xref="GI:220903419"
/db_xref="InterPro:IPR001509"
/db_xref="InterPro:IPR010099"
/db_xref="InterPro:IPR013549"
/db_xref="GeneID:7283787"
/translation="MHVLILGATGFIGSHITASLLAAGHTVCAAARSGGSGRPAADGL
AYATWDGKNPDGLRPLLEHADAVINLQGENIGAARWTRARKQAIVQSRLDAGYALVTA
LHELRHKNQRLPQCLLQASACGYYGLWPDAATAPPCTEHSPAGQGFLARTCVQWEAST
APVEDMGIRRCILRFSPVLGKKSSGAAGGFLERMLPPFRYFMGGPVGSGHQPVSWIHM
EDVTRIALFLLAQSGLCGTFNASAPETVSMRRFAHTLGSVCARPVWLPVPASLVRLAL
GEMAEELILCGQNPFPSRLADAGYAFRYGSLEQALADTLA"
sig_peptide complement(171018..171086)
/locus_tag="Ddes_0133"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.736) with cleavage site probability 0.520 at
residue 23"
misc_feature complement(170142..171083)
/locus_tag="Ddes_0133"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(170154..171080)
/locus_tag="Ddes_0133"
/note="TIGR01777 family protein; Region: yfcH"
/db_xref="CDD:188166"
misc_feature complement(order(170553..170564,170628..170630,
170640..170642,170721..170729,170871..170879,
170979..170987,171051..171053,171057..171062,
171066..171068))
/locus_tag="Ddes_0133"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature complement(order(170628..170630,170640..170642,
170721..170723,170811..170813))
/locus_tag="Ddes_0133"
/note="active site"
/db_xref="CDD:187535"
gene complement(171294..173720)
/locus_tag="Ddes_0134"
/db_xref="GeneID:7283788"
CDS complement(171294..173720)
/locus_tag="Ddes_0134"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
chemotaxis sensory transducer;
KEGG: dvu:DVU1975 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478732.1"
/db_xref="GI:220903420"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:7283788"
/translation="MTIRAKFLLTFFAAIILGIGSTLLIVTGKMDTMNERSTQAYMEH
ALSSTNNYIALFFKQAQESATMLASTPAIREAFGHLPLFTDNSEPQQVARPAMTPQAR
TVDEIFQLVKDSHANYSSITFGAENGGFLEYPLASWPAGHDPRTKKWYRQQMESSRAT
NISSAYTTAQGVAACAVTAKVSGADGRPLGVIDIDITLSALVVMVEGIKIGQTGSIIL
LEDSGMVLAAPQYKAWVNRNISECGVPALQDLLAAGGTGTLALDGVEKRIVVYKGFQG
WRMIALMNESEVSADMNAALKQVLLAGAAITAVLLLLALWIVQSIRKPLHQMVQCTTS
ISNGDLDCLPSAKRFSAELLQLHTGLSRITDTCKNMRTQVTATVGSVADGYLRSSINE
TEFRGDFKKIVESINGLAGSMLAVIDKIPSPIMIRDAQRKIRFLNEAAMFGGKTPDSM
TGTACSGHFRADACAGGCAADQCFASSRKETTSTVSHPSDGTAIDMFYTALPYGSDAV
LALMTDQTQMLQAQRQVMEVAREVEEVGTKLSAASHELAHIIALSDQGAERQAMRVGE
TASAMEEMNSTVLEVARNAEQAANMAMGTREKAQEGAEIVRKSVNCIQTVQSQSLQLK
NDMNTLNRNAADISQIMGVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKL
AEKTMSSTTEVARAIAAIQSSAGQSVNSVDASTRSIEEATTFVTLSGTALEEIVSMVD
TTADQVRAIATASEEQSATSDEINRSVNEINEIGIKTAQGMRDANTAVSGLKQLSQTL
DALLKTMKLS"
sig_peptide complement(173634..173720)
/locus_tag="Ddes_0134"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.832) with cleavage site probability 0.339 at
residue 29"
misc_feature complement(173022..173195)
/locus_tag="Ddes_0134"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature complement(171303..172058)
/locus_tag="Ddes_0134"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(171408..172007)
/locus_tag="Ddes_0134"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(171411..171416,171423..171425,
171432..171437,171444..171446,171453..171458,
171462..171467,171474..171479,171483..171488,
171495..171497,171504..171509,171516..171518,
171525..171530,171537..171542,171546..171551,
171558..171560,171567..171572,171579..171581,
171588..171593,171630..171635,171642..171647,
171651..171656,171663..171668,171675..171677,
171684..171689,171696..171698,171705..171707,
171717..171719,171738..171740,171747..171749,
171759..171761,171768..171773,171780..171782,
171789..171791,171798..171803,171810..171815,
171822..171824,171831..171836,171840..171842,
171852..171857,171861..171866,171873..171875,
171882..171887,171894..171899,171906..171908,
171915..171920,171927..171929,171936..171941,
171945..171950,171957..171959,171966..171971,
171978..171983))
/locus_tag="Ddes_0134"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(171672..171773)
/locus_tag="Ddes_0134"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(174349..174888)
/locus_tag="Ddes_0135"
/db_xref="GeneID:7283789"
CDS complement(174349..174888)
/locus_tag="Ddes_0135"
/inference="protein motif:PFAM:PF01558"
/note="PFAM: pyruvate ferredoxin/flavodoxin
oxidoreductase;
KEGG: lip:LI0792 ferredoxin oxidoreductases, gamma
subunit"
/codon_start=1
/transl_table=11
/product="pyruvate ferredoxin/flavodoxin oxidoreductase"
/protein_id="YP_002478733.1"
/db_xref="GI:220903421"
/db_xref="InterPro:IPR002869"
/db_xref="GeneID:7283789"
/translation="MSKYQDVIIAGFGGQGVMLIGNLLAQAGMEHGLEVSFIPVYGAE
MRGGTANCTVVLDEHAIGSPLVREPLSTIILNEPSLAKFQPRLHRDGVQVVNASLVNR
ELVDTTLRTVYIPANDMAHELGNVKLANMVALGAWLKATGALPPAVVQDALHRVISAH
YAKLIPVNEKALEAGYSFA"
misc_feature complement(174352..174888)
/locus_tag="Ddes_0135"
/note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
Region: POR; cl00546"
/db_xref="CDD:207101"
misc_feature complement(174355..174873)
/locus_tag="Ddes_0135"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
gamma; Validated; Region: PRK08537"
/db_xref="CDD:181462"
gene complement(174881..175732)
/locus_tag="Ddes_0136"
/db_xref="GeneID:7283790"
CDS complement(174881..175732)
/locus_tag="Ddes_0136"
/inference="protein motif:PFAM:PF02775"
/note="PFAM: thiamine pyrophosphate protein domain protein
TPP-binding;
KEGG: lip:LI0791 ferredoxin oxidoreductases, beta subunit"
/codon_start=1
/transl_table=11
/product="thiamine pyrophosphate domain-containing
TPP-binding protein"
/protein_id="YP_002478734.1"
/db_xref="GI:220903422"
/db_xref="InterPro:IPR011766"
/db_xref="GeneID:7283790"
/translation="MSAQQTEILRPGCTTPREGERLVFDVNPVLNERHTYYCPGCHHG
IAHRLVSEVLHELGVADRTILVAAVGCATFTYDYFNVDGLEAPHGRACAVATGVRRAR
PESVVFTYQGDGDMAAIGMAESLHAANRGEKITTIFINNTVYGMTGGQMAPTTLVGQK
TTTSRQGRNVGNEGGPIRMAEIMAQLDGVAYAARCALDSVKHVRAAKKAVRKAFDAQL
QGLGFGFVELLSGCPTNWHLDPIAANRRIAEAMIPVFPLGVYKDVSSADATAENAGQD
SQEAGRE"
misc_feature complement(<175013..175642)
/locus_tag="Ddes_0136"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy
production and conversion]; Region: PorB; COG1013"
/db_xref="CDD:31217"
misc_feature complement(175028..175624)
/locus_tag="Ddes_0136"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:207466"
misc_feature complement(order(175304..175306,175310..175312,
175388..175399,175469..175471))
/locus_tag="Ddes_0136"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene complement(175735..176844)
/locus_tag="Ddes_0137"
/db_xref="GeneID:7283791"
CDS complement(175735..176844)
/locus_tag="Ddes_0137"
/inference="protein motif:PFAM:PF01855"
/note="catalyzes the coenzyme A-dependent oxidation of
3-methyl-2-oxobutanoate coupled to the reduction of
ferredoxin producing S-(2-methylpropanoyl)-CoA"
/codon_start=1
/transl_table=11
/product="2-ketoisovalerate ferredoxin reductase"
/protein_id="YP_002478735.1"
/db_xref="GI:220903423"
/db_xref="InterPro:IPR002880"
/db_xref="GeneID:7283791"
/translation="MSQNSSERILIKGNEAVAFGAVDAGCRCYFGYPITPQNEIPEVL
SSLLPEHGGQFVQAESEVAAVNMLLGAAACGIPALTSSSSCGISLMQEGISYMAGSHI
PGVMVNMQRGGPGLGDIGPSQGDYFQAVKGGGHGDHRNLVLAPATAQECYDFMFRAFA
LAFRYANPVMVLGDAIVGQIKEPVRRIPPADAVSPEALAAMTKGWRLEGYGKRGTGAQ
PRLLKSVYLAEGALAERNRLLMKKYDDMKAECAWECMDVDDAELVVVAFGSIGRIARS
AIRRLRAEGHKIGLFRPITLFPFPEEALRALAPGRRFLVMEQNTGQMVEDVRLALFAQ
PGISASSVLWHGIMPGLFIGADALREPMLQALKEK"
misc_feature complement(175738..176832)
/locus_tag="Ddes_0137"
/note="2-ketoisovalerate ferredoxin reductase; Validated;
Region: PRK07119"
/db_xref="CDD:180853"
misc_feature complement(176320..176808)
/locus_tag="Ddes_0137"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature complement(order(176452..176457,176503..176508,
176545..176547,176557..176559,176566..176568,
176617..176619,176623..176625,176632..176640,
176644..176649,176668..176679,176719..176721,
176728..176730,176740..176742,176758..176763))
/locus_tag="Ddes_0137"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(176557..176559,176566..176568,
176617..176619,176623..176625,176632..176640,
176644..176649,176668..176679,176719..176724,
176740..176742,176746..176751,176758..176763))
/locus_tag="Ddes_0137"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(176662..176664,176746..176748))
/locus_tag="Ddes_0137"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(176512..176514,176740..176742))
/locus_tag="Ddes_0137"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
gene complement(176841..177065)
/locus_tag="Ddes_0138"
/db_xref="GeneID:7283792"
CDS complement(176841..177065)
/locus_tag="Ddes_0138"
/inference="protein motif:PFAM:PF00037"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein;
KEGG: dvl:Dvul_0044 4Fe-4S ferredoxin iron-sulfur binding
domain-containing protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_002478736.1"
/db_xref="GI:220903424"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR017900"
/db_xref="GeneID:7283792"
/translation="MSRIVFLEERCKGCRLCVEACPVHILRPSGRFNRQGYEVMEMDG
QCTGCASCAVMCPDVAIRVFKSAVKKGGEA"
misc_feature complement(176985..177056)
/locus_tag="Ddes_0138"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:207738"
misc_feature complement(176895..177035)
/locus_tag="Ddes_0138"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene complement(177275..178372)
/gene="queA"
/locus_tag="Ddes_0139"
/db_xref="GeneID:7283793"
CDS complement(177275..178372)
/gene="queA"
/locus_tag="Ddes_0139"
/inference="protein motif:TFAM:TIGR00113"
/note="Synthesizes oQ from preQ1 in a single
S-adenosylmethionine-requiring step"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_002478737.1"
/db_xref="GI:220903425"
/db_xref="InterPro:IPR003699"
/db_xref="GeneID:7283793"
/translation="MHIEEADFLLQSYRFDLPQEQVAQFPPEERGGSRLLVMPRNGEL
TLRHENFCDLPDCLPEGALLIANNSRVLQARLLGTRSTGGKVEFLLLTPLPLVIERAR
ADKNGGLYAEAEGLVRSGGSIREGESFGFGAGIGVTVLESGPFGQRRVRLSWTGDLAA
AFAATGHIPLPPYIKRPDAEDDLSRYQTVYSRQDKTGSVAAPTAGLHFTPPLRERLAA
KGFEWAEVTLYVGYGTFSPVRSSDIRSHRMHREYIEVPEATALAIARAREEKRPVIAV
GTTSLRTLEGVAELCGRVQPYTGWTDIFLYPGRPFRVADGLVTNFHLPESSLLMLVSA
FAGRKRVLDAYAEAIANNYRFFSYGDAMLIR"
misc_feature complement(177281..178351)
/gene="queA"
/locus_tag="Ddes_0139"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
misc_feature complement(177281..178348)
/gene="queA"
/locus_tag="Ddes_0139"
/note="Queuosine biosynthesis protein; Region:
Queuosine_synth; pfam02547"
/db_xref="CDD:202279"
gene 178503..179102
/locus_tag="Ddes_0140"
/db_xref="GeneID:7283794"
CDS 178503..179102
/locus_tag="Ddes_0140"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_0042 putative lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478738.1"
/db_xref="GI:220903426"
/db_xref="GeneID:7283794"
/translation="MRRPLVILVLLAVLATIQGCASIGLENPFSNDPLTGGTDASTSQ
LLGVPVPAGMQRYASHGFQDFGPGGGRQGLEVLRGQVNTAFAAQIMYSGLQSQGWQLR
LALRKGARAVYVYDRGAAMAVLTFESQAVLTIMNIWTGDRLPDGAPLPMQDAADAAPA
PPAGDSGGFGDSGGMNTAPQGGHGGGSYGAGGGLQERNL"
sig_peptide 178503..178568
/locus_tag="Ddes_0140"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.984) with cleavage site probability 0.570 at
residue 22"
gene 179099..180352
/locus_tag="Ddes_0141"
/db_xref="GeneID:7283795"
CDS 179099..180352
/locus_tag="Ddes_0141"
/inference="protein motif:TFAM:TIGR00521"
/note="TIGRFAM: phosphopantothenoylcysteine
decarboxylase/phosphopantothenate/cysteine ligase;
PFAM: flavoprotein; DNA/pantothenate metabolism
flavoprotein domain protein;
KEGG: dvl:Dvul_0041 phosphopantothenoylcysteine
decarboxylase/phosphopantothenate--cysteine ligase"
/codon_start=1
/transl_table=11
/product="phosphopantothenoylcysteine
decarboxylase/phosphopantothenate/cysteine ligase"
/protein_id="YP_002478739.1"
/db_xref="GI:220903427"
/db_xref="InterPro:IPR003382"
/db_xref="InterPro:IPR005252"
/db_xref="InterPro:IPR007085"
/db_xref="GeneID:7283795"
/translation="MSDQKRGFKTPFDHSTRFAQKRLHLGVCGSVACYRAADLLRAWR
GMGMHVSATLTPGARRFVTPMLFESLGAAPVYEDMFSQGQEIFAHLEPGQHAHAMVVA
PASADALFRLAHGAAGDMLAAQALAFDGPLVIAPAMNPRMWAHAATRANVALLRERGA
HIVAPACGGTACGDEGEGRLAPLHDIFLAALKALSPQDMAGRRVMVTLGPTREGWDGV
RFWSNPSSGLMGAALAVCAWLRGAEVTAVCGPGVRARMPQGIARRDVVSARDMFAVAA
ALWPQMDVGMFTAAVADFSPRPLGGRKFKKAEAPQGFSLDFLPNPDILQSLAEQRAPG
QKILAFAAETAPDMNALLPLAHAKITRKKADLLAANRVNSADSGFASPTNSMVVVDAN
GREEIWPTQSKADVAWELCSWLLRM"
misc_feature 179141..180328
/locus_tag="Ddes_0141"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:180143"
misc_feature 179159..179542
/locus_tag="Ddes_0141"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature 179693..180265
/locus_tag="Ddes_0141"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene 180334..181278
/locus_tag="Ddes_0142"
/db_xref="GeneID:7283796"
CDS 180334..181278
/locus_tag="Ddes_0142"
/inference="similar to AA sequence:KEGG:Dvul_0040"
/note="KEGG: dvl:Dvul_0040 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478740.1"
/db_xref="GI:220903428"
/db_xref="GeneID:7283796"
/translation="MAFAHVNPLTALWQRRGLSCLLMHEGFDAFAPRSVESAAIPPVR
SREEQPRYGSAARQPVHARQGMQGGAKAPGSVDGQTGPGRQGGHEGQGSSFRQATAPS
RGQAAPPSPVQEQGSGHRSAPVPAEGGQSAQPSGSRLWKPLAPDLWPTPWRRQLEKAR
PGLVLWTYWNLGLDLCNAQVEGQMERRGFLQKLLQDLAHPAGTHTFWPASLPDEGGTE
PAAPPAVPPAREDGLVPHADAFWSGASRLGARGVVVMGSAAVKALGLPSGLRPLQQAR
YRGHMVWVLWDVDYMQREDQRYASMLAFLRQALRQVTR"
gene 181754..182137
/locus_tag="Ddes_0143"
/db_xref="GeneID:7283797"
CDS 181754..182137
/locus_tag="Ddes_0143"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: bth:BT_2176 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478741.1"
/db_xref="GI:220903429"
/db_xref="GeneID:7283797"
/translation="MFIAIGLMFLGMLAGFLLRGRRLASVLSRCVTPAIVLLLFALGI
SVGGNSTLMGALPELGSAAMLLTLCGVGGSLVCVLCIRRFFRQPPEPDALKRFCASDG
TEKSCTAHFSAPASSAGTGQDDPRA"
sig_peptide 181754..181828
/locus_tag="Ddes_0143"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.850) with cleavage site probability 0.838 at
residue 25"
gene 182134..182733
/locus_tag="Ddes_0144"
/db_xref="GeneID:7283798"
CDS 182134..182733
/locus_tag="Ddes_0144"
/inference="protein motif:PFAM:PF03956"
/note="PFAM: protein of unknown function DUF340 membrane;
KEGG: bvu:BVU_1366 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478742.1"
/db_xref="GI:220903430"
/db_xref="InterPro:IPR005642"
/db_xref="GeneID:7283798"
/translation="MNGSLLILFFFGAGVLLARLGLVPDYFIEHDMTLYVLWALMLLV
GVSMGADRRFGEMLRTLRPRVLLLPLATTVGTFAGTALASFFLVYSAAECMAVGAGFA
YYSLSSIFITQYKGPELGTIALISNIARELITLLFTPLLVRLMGPTAAISCGGASTLD
TTLPVITRYAGNQWIFISIVHALVLDFSVPFWVTFFCSI"
sig_peptide 182134..182190
/locus_tag="Ddes_0144"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.677) with cleavage site probability 0.593 at
residue 19"
misc_feature 182236..182727
/locus_tag="Ddes_0144"
/note="Membrane protein of unknown function (DUF340);
Region: DUF340; pfam03956"
/db_xref="CDD:202829"
gene 182970..183662
/locus_tag="Ddes_0145"
/db_xref="GeneID:7283799"
CDS 182970..183662
/locus_tag="Ddes_0145"
/inference="similar to AA sequence:KEGG:Dvul_2682"
/note="KEGG: dvl:Dvul_2682 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478743.1"
/db_xref="GI:220903431"
/db_xref="GeneID:7283799"
/translation="MARMRSAKQKLKECINSPQWRDHLDEIAQGGLENVGPLFSFLLL
GPQTMHRAAVALGQVTARLAEKQPEAAKNIIRRLMWHLNEESGNIGWGIPDAFGEILA
ASPSLAKDFHRILISYIIDLGYDDNFCDHDILRRSCYWSIGRLALARPELCLGARKWL
LKGLEDQDIICRGMAAWALSQLPPDLMDAPALRRLADAGHDEMCELFDGNDVYEKSVS
QIAGEALDRLSA"
misc_feature 183369..183515
/locus_tag="Ddes_0145"
/note="HEAT-like repeat; Region: HEAT_EZ; pfam13513"
/db_xref="CDD:205691"
gene complement(183917..185194)
/locus_tag="Ddes_0146"
/db_xref="GeneID:7283800"
CDS complement(183917..185194)
/locus_tag="Ddes_0146"
/inference="similar to AA sequence:KEGG:GSU1966"
/note="KEGG: gsu:GSU1966 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478744.1"
/db_xref="GI:220903432"
/db_xref="GeneID:7283800"
/translation="MPNLHSFLQRLFPICRSITGNGVRQTLSILKEELPALQLHEVPS
GTPVFDWTVPDEWNITEARLTGPDGEVIADFAHCNLHVVGYSEPVDIHLSLDDLQEHL
HSRPDLPEAIPYVTSYYARRWGFCLKHSIRQKLKPGTYHAVIRASLEPGHLSYGEFVL
PGQSEKEIFLSTYVCHPSMANNELSGPVVATALARWLQSAPRRYTYRIVFVPETIGAI
TYLSKNHQMLRQRVAAGFNLTCLGDDRAYSYVPSRKGNTLADRAALHVLRHFAPDFVR
YTFHDRGSDERQYCSPGIDLPLCSVMRTKYHAFPEYHTSLDDCSLVTEKGLQGGFEIM
RKILETLEEDVTYQCRVLCEPQLGRRGLYPTLSTRYSCTEQVDLMMDLLAYADGSMSL
LEEAETVGADIFRCASVMRQLEEQGVICRKSES"
misc_feature complement(183938..185182)
/locus_tag="Ddes_0146"
/note="M28 Zn-Peptidases; Region: M28_like_3; cd05644"
/db_xref="CDD:193522"
misc_feature complement(183938..185086)
/locus_tag="Ddes_0146"
/note="Domain of unknown function (DUF2172); Region:
DUF2172; pfam09940"
/db_xref="CDD:150595"
misc_feature complement(order(184256..184258,184478..184480,
184550..184555,184649..184651,184670..184672,
184676..184678))
/locus_tag="Ddes_0146"
/note="active site"
/db_xref="CDD:193522"
misc_feature complement(order(184256..184258,184649..184651,
184667..184669))
/locus_tag="Ddes_0146"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193522"
gene complement(185856..186821)
/locus_tag="Ddes_0147"
/db_xref="GeneID:7283801"
CDS complement(185856..186821)
/locus_tag="Ddes_0147"
/inference="protein motif:PFAM:PF01584"
/note="PFAM: response regulator receiver; CheW domain
protein;
KEGG: lip:LI1117 chemotaxis signal transduction protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver modulated CheW
protein"
/protein_id="YP_002478745.1"
/db_xref="GI:220903433"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002545"
/db_xref="GeneID:7283801"
/translation="MAQTNILLETGTNELEIVEFYVNQDGYEAHYGLNVAKVVEIGRR
QPVTAMPEMRHKALLGAFLHRNGRIVPLIDMACFLGNAPITNEDAKVIVTEFNGVCTG
FLVSGVNRIYRLSWTDVEAPGQFLQNMSRSSVTGVVRLEERVIFLLDLEAIVAELHPA
MALRFDASDMAAPDGKTYKILHVDDSSSIRSLLLDLLNKEGRFKVEQRVNGQEAWDYL
QSVRNRCEAENRPVSDFLQGIITDIEMPAMDGLALCKRIKEDPVLKKLPVAIFSSMIN
DSLARKCALVGADAQYTKPDLKALSKKLYELITVAWEQQNATAKS"
misc_feature complement(186345..186815)
/locus_tag="Ddes_0147"
/note="Chemotaxis signal transduction protein [Cell
motility and secretion / Signal transduction mechanisms];
Region: CheW; COG0835"
/db_xref="CDD:31177"
misc_feature complement(185898..186215)
/locus_tag="Ddes_0147"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(185937..185942,185949..185951,
186006..186008,186072..186074,186096..186098))
/locus_tag="Ddes_0147"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(186096..186098)
/locus_tag="Ddes_0147"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(186072..186080,186084..186089))
/locus_tag="Ddes_0147"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(185937..185942)
/locus_tag="Ddes_0147"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(186957..187091)
/locus_tag="Ddes_0148"
/db_xref="GeneID:7283802"
CDS complement(186957..187091)
/locus_tag="Ddes_0148"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478746.1"
/db_xref="GI:220903434"
/db_xref="GeneID:7283802"
/translation="MPACFYTVYGSSFLHCAIPGAYRNMVFLFSEKAAAFYCQGIPSA
"
gene complement(187216..188136)
/locus_tag="Ddes_0149"
/db_xref="GeneID:7283803"
CDS complement(187216..188136)
/locus_tag="Ddes_0149"
/inference="protein motif:TFAM:TIGR01136"
/note="TIGRFAM: cysteine synthase; cysteine synthase A;
PFAM: Pyridoxal-5'-phosphate-dependent protein beta
subunit;
KEGG: dvl:Dvul_2297 cysteine synthases"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="YP_002478747.1"
/db_xref="GI:220903435"
/db_xref="InterPro:IPR001216"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR005856"
/db_xref="InterPro:IPR005859"
/db_xref="GeneID:7283803"
/translation="MLTNILQAIGNTPMLRLDLSKDMPGTVWLKLENRNPGGSIKDRV
AFHLIENALQWGELEPGGLVVEATSGNMGIGIALVSAVRGLRCVLAMPESMSLERRNL
LRGLGAELVLTPAARGMTGAVEEARRIAEEQGGFIPGQFTNPEAVQAHYKTTGPEIYS
DSVGKMDVLVAGVGSGSSITGAGRFLKERIPGFRVIAVEPAASPVISGGAASPHLIQG
IGAGFIPAILDRSLLDEILLADGEEALDTARLLMRQGIVAGISTGANVRAALQVAARQ
EMAGKNIVTFACDTGERYMSTRLFTDMAQA"
misc_feature complement(187246..188127)
/locus_tag="Ddes_0149"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature complement(187249..188109)
/locus_tag="Ddes_0149"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature complement(order(187252..187254,187261..187263,
187291..187293,187366..187374,187375..187383,
187654..187659,187819..187824,187831..187836,
187843..187848,187894..187896,187903..187905,
188029..188031,188035..188037,188053..188055,
188089..188097))
/locus_tag="Ddes_0149"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(order(187270..187275,187354..187356,
187483..187485,187603..187620,187924..187926,
188014..188016))
/locus_tag="Ddes_0149"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(188014..188016)
/locus_tag="Ddes_0149"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 188356..188817
/locus_tag="Ddes_0150"
/db_xref="GeneID:7283804"
CDS 188356..188817
/locus_tag="Ddes_0150"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: ppd:Ppro_0148 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478748.1"
/db_xref="GI:220903436"
/db_xref="GeneID:7283804"
/translation="MKLLKAASLICALVFCLSAGTAQAKADSVALYTEAVMTGDIPAL
ETLLAPNYWNIAANGHIEDKEHFIQSIKNKELVVDRLTILNARTALIGGAQLVTGNGY
FKGTSVPPQPEGLMRFTLVLVKNQGREQVVLFQATPVVPSTDCKDGNCKIQ"
sig_peptide 188356..188430
/locus_tag="Ddes_0150"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.975 at
residue 25"
misc_feature 188449..188739
/locus_tag="Ddes_0150"
/note="SnoaL-like domain; Region: SnoaL_3; pfam13474"
/db_xref="CDD:222158"
gene complement(189130..190533)
/locus_tag="Ddes_0151"
/db_xref="GeneID:7283805"
CDS complement(189130..190533)
/locus_tag="Ddes_0151"
/inference="protein motif:TFAM:TIGR01350"
/note="TIGRFAM: dihydrolipoamide dehydrogenase;
PFAM: FAD-dependent pyridine nucleotide-disulphide
oxidoreductase; pyridine nucleotide-disulphide
oxidoreductase dimerisation region;
KEGG: dps:DP0303 dihydrolipoamide dehydrogenase, E3
component"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_002478749.1"
/db_xref="GI:220903437"
/db_xref="InterPro:IPR000103"
/db_xref="InterPro:IPR000815"
/db_xref="InterPro:IPR001327"
/db_xref="InterPro:IPR004099"
/db_xref="InterPro:IPR006258"
/db_xref="InterPro:IPR012999"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:7283805"
/translation="MKKLTIIGSGPGGHMAAFAAARAGHSVTLVESAAVGGTCLHTGC
IPTKTFKSSADALEKIRHMGNYAITGNADASISMPDLLARKKNVIGLLTTGLEKTCAS
LKITIVRGRGRVVSAREVAVSTQEGTVLVESDNVIIATGSRPLDLPSLPADHKHILNS
DDALALEHVPTSIAIVGGGVIGCEMACIFRSFGAQVTVIEGQDRLLPIPSVDAEMSKL
LLREMKKAGIRVELGKTVSAATVEQGVAKLAVSPSRPRGDAPAEAAMLDVESVFVTVG
RVPNTEGLGLAEAGIAVTPRGWIEVDDCLQTSVPGVFAIGDVLGPEKIMLAHMASAEA
EHVVAHLDSPAPCDYSVVPSAIFTTPEIGCVGLSEEQALAAGLPVRCTLLQVRELGKA
HAMGEIAGVFKLVAHAENNTILGAHLCGPHATDLVAEAGLAIRMGAKVDDVAHTIHAH
PTLAEGFYELCHKAARP"
sig_peptide complement(190474..190533)
/locus_tag="Ddes_0151"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.973) with cleavage site probability 0.893 at
residue 20"
misc_feature complement(189142..190524)
/locus_tag="Ddes_0151"
/note="dihydrolipoamide dehydrogenase; Region:
lipoamide_DH; TIGR01350"
/db_xref="CDD:211643"
misc_feature complement(189781..190020)
/locus_tag="Ddes_0151"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(189151..189480)
/locus_tag="Ddes_0151"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(190703..191095)
/locus_tag="Ddes_0152"
/db_xref="GeneID:7283806"
CDS complement(190703..191095)
/locus_tag="Ddes_0152"
/inference="protein motif:TFAM:TIGR00527"
/note="TIGRFAM: glycine cleavage system H protein;
PFAM: glycine cleavage H-protein;
KEGG: nph:NP4772A glycin cleavage system H protein"
/codon_start=1
/transl_table=11
/product="glycine cleavage system H protein"
/protein_id="YP_002478750.1"
/db_xref="GI:220903438"
/db_xref="InterPro:IPR002930"
/db_xref="InterPro:IPR003016"
/db_xref="InterPro:IPR017453"
/db_xref="GeneID:7283806"
/translation="MSSYTLPEDRSYTDEHIWLREDAQGLTVGISDFAQAQLEEVVYV
DMPAVGSAVEAGKEFGSVESMKSVSALFSPVSGVVEAVNTDLENKPDLVNSDCYGQGW
ILRLRREGDNAVPLLSAEEYRTHLKSQA"
misc_feature complement(190778..191062)
/locus_tag="Ddes_0152"
/note="Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system (GCS)
found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of 4
different components (P-, H-, T- and...; Region: GCS_H;
cd06848"
/db_xref="CDD:133457"
misc_feature complement(190898..190900)
/locus_tag="Ddes_0152"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133457"
gene complement(191290..191751)
/locus_tag="Ddes_0153"
/db_xref="GeneID:7283807"
CDS complement(191290..191751)
/locus_tag="Ddes_0153"
/inference="protein motif:PFAM:PF02566"
/note="PFAM: OsmC family protein;
KEGG: drm:Dred_2833 OsmC family protein"
/codon_start=1
/transl_table=11
/product="OsmC family protein"
/protein_id="YP_002478751.1"
/db_xref="GI:220903439"
/db_xref="InterPro:IPR003718"
/db_xref="GeneID:7283807"
/translation="MAKINVEWKGNMVFEGRDSDGHSLVMDASAIYGGSNQGVRPMEM
LLISLAGCTGIEVGHAMNKMRLEYTSFTITADAVRREEIPQIFTEINVEYTVEGTGIS
LERFVRAFELGAVKYCSVANMLKASSKINYSFVLNGQHYNYPLQDGEAAPQ"
misc_feature complement(191338..191751)
/locus_tag="Ddes_0153"
/note="Predicted redox protein, regulator of disulfide
bond formation [Posttranslational modification, protein
turnover, chaperones]; Region: COG1765"
/db_xref="CDD:31951"
gene complement(191764..193359)
/locus_tag="Ddes_0154"
/db_xref="GeneID:7283808"
CDS complement(191764..193359)
/locus_tag="Ddes_0154"
/inference="protein motif:PFAM:PF00474"
/note="PFAM: Na+/solute symporter;
KEGG: drm:Dred_2834 Na+/solute symporter"
/codon_start=1
/transl_table=11
/product="Na+/solute symporter"
/protein_id="YP_002478752.1"
/db_xref="GI:220903440"
/db_xref="InterPro:IPR001734"
/db_xref="GeneID:7283808"
/translation="MTSSAIWMFGLALAYTLLLIVMSQIAKKKAQAGEDFFVGGRKFS
RWTVAFCITGLFSGSTYIAILELSYLTGISALWYGVAELTHVLIIALVLIGPFRKRMM
VTVSGLIGDKYGRAAKGIAGGITAITFPMWSVATALAFASCINAITGMDMLLAVVITA
ALMYVFLSAGGMWSVAMTQTANFFVFMIMFAVAIYAIAINPGFDAVTTLLTTDAKYGS
LTSVGLQTILAWFGTFLINVLLAQAAFQMALSCKTADEGRKGLLIAGGFNVIFIAMGV
LVGAAAAIVTPGNARGLVAVPIYLMETLPAPMVGLFTLGIWACALGWGAPCQFSGATS
LGRDVGSAIWPDASDAKLVKLTRLSLLALTCLMILFGYLRSEQAAWWNIFAWTARNGA
TFAPMVAALFWSVATPRGSLTALIAGCGAGLIWNWLGGWAVGSFYLKIHPVWVAMAAN
IIGMTVVSLAEKGWYFISPAGGLRALRNASIGLALVLAIALMAAGTWFYQTGLWGMTA
FLVVLCAWVALIFSTERQQPSMI"
sig_peptide complement(193273..193359)
/locus_tag="Ddes_0154"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.884) with cleavage site probability 0.394 at
residue 29"
misc_feature complement(191986..193335)
/locus_tag="Ddes_0154"
/note="Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding domain;
Region: SLC5sbd; cd10322"
/db_xref="CDD:212032"
misc_feature complement(order(192391..192396,192403..192405,
193198..193200))
/locus_tag="Ddes_0154"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212032"
gene complement(193883..195607)
/locus_tag="Ddes_0155"
/db_xref="GeneID:7283809"
CDS complement(193883..195607)
/locus_tag="Ddes_0155"
/inference="protein motif:PFAM:PF00158"
/note="PFAM: CBS domain containing protein; sigma-54
factor interaction domain-containing protein;
helix-turn-helix Fis-type; ATPase associated with various
cellular activities AAA_5;
SMART: AAA ATPase;
KEGG: drm:Dred_2835 putative PAS/PAC sensor protein"
/codon_start=1
/transl_table=11
/product="Fis family sigma-54 specific transcriptional
regulator"
/protein_id="YP_002478753.1"
/db_xref="GI:220903441"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:7283809"
/translation="MPALPEESMLVEQVMHDNPETLTPGHLLKDALPVYERHGVNCVP
ILDENKKVRGILTIFRLVQAIRSGKSFETPISEVMDVDLVSIRNDATFGMACSMPIDR
MLVLDHDDRLVGVLTKKELIHKIYKAFCSADCHNRELSAVINCATDGIIIFDTNGNAL
YTNDKIRFLLPDCDTINQPASPAMKAVAELLKKTLHSRKSASTLLEDCNGKQVIFSTT
PIFDADQRLFRCVLSAQDMTEVTRLQEEAENSRRKLAAFQEASLKGTRTIAHNPAMLR
LLDEAARLGSVDSTVLITGETGAGKEVVAMHIHNHSKRRNGPLVQINCGTIPQHLQEA
ELFGYEKGSFTGANATRAGMLEVAHEGTLMLDEVGEMDLTLQVKLLRALQEGVIYRIG
GRKPVRLDVRIIAMTNRDLLKMVRENTFREDLYYRLNVIPLAVPPLRERCEDILPLAQ
HFLSCFSKKYSCACSLSPAEEEMLQAYSWPGNVRELANFMERLTIASLSSGNRAPVWE
SIVRPNGSVAPPVNAPMREQMRHFEKQCVENALRNTVSIRAAARALGISHATLLRKMR
EHDLVVQN"
misc_feature complement(195242..195577)
/locus_tag="Ddes_0155"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
misc_feature complement(195239..195559)
/locus_tag="Ddes_0155"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cd02205"
/db_xref="CDD:73081"
misc_feature complement(194882..195166)
/locus_tag="Ddes_0155"
/note="PAS fold; Region: PAS_4; pfam08448"
/db_xref="CDD:117025"
misc_feature complement(193904..194806)
/locus_tag="Ddes_0155"
/note="psp operon transcriptional activator PspF; Region:
phageshock_pspF; TIGR02974"
/db_xref="CDD:163093"
misc_feature complement(194315..194788)
/locus_tag="Ddes_0155"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(194702..194725)
/locus_tag="Ddes_0155"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(194384..194386,194510..194512,
194699..194722))
/locus_tag="Ddes_0155"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(194507..194524)
/locus_tag="Ddes_0155"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(194327..194329)
/locus_tag="Ddes_0155"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(193904..194014)
/locus_tag="Ddes_0155"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene complement(196044..197060)
/locus_tag="Ddes_0156"
/db_xref="GeneID:7283810"
CDS complement(196044..197060)
/locus_tag="Ddes_0156"
/EC_number="1.2.1.12"
/inference="protein motif:TFAM:TIGR01534"
/note="KEGG: dvl:Dvul_2386 glyceraldehyde-3-phosphate
dehydrogenase, type I;
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I;
PFAM: glyceraldehyde 3-phosphate dehydrogenase"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase, type
I"
/protein_id="YP_002478754.1"
/db_xref="GI:220903442"
/db_xref="InterPro:IPR000173"
/db_xref="InterPro:IPR006424"
/db_xref="GeneID:7283810"
/translation="MSKIRIGINGFGRIGRQVFRALHQHYRDRVEVVAINDLFDAETN
FHLLEYDSVYGRAHLDAKIDGAEVTVGDWKIHCFAERDPKQLAWGQYGVDIVVESTGI
FRKASQCSVHIENGAKKVIITAPAKEEDITIVMGVNHQEYDPAKHHIVSNASCTTNCL
APVALVLQKEFGIQIGNMTTIHSYTNDQRILDMAHKDPRRARAAACNIIPTSTGAAQA
VAKVIPELKGKFSGYSLRVPTPTVSVVDFTGILEKETDTETLLGKLKEASETYLKGIL
EYNDKALVSMDFKGNPASSILEASYTTVQDGKMVKLVAWYDNEWGYSCRVCDLACLMA
EKGL"
misc_feature complement(196077..197009)
/locus_tag="Ddes_0156"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:211668"
misc_feature complement(196596..197009)
/locus_tag="Ddes_0156"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; smart00846"
/db_xref="CDD:197914"
misc_feature complement(196113..196583)
/locus_tag="Ddes_0156"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene 197096..197215
/locus_tag="Ddes_0157"
/db_xref="GeneID:7283811"
CDS 197096..197215
/locus_tag="Ddes_0157"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478755.1"
/db_xref="GI:220903443"
/db_xref="GeneID:7283811"
/translation="MLPCAFPAGAGLLTANGAVLEAQGVAPMDRAEEPRSRAE"
sig_peptide 197096..197161
/locus_tag="Ddes_0157"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.779) with cleavage site probability 0.397 at
residue 22"
gene complement(197234..197788)
/locus_tag="Ddes_0158"
/db_xref="GeneID:7283812"
CDS complement(197234..197788)
/locus_tag="Ddes_0158"
/inference="protein motif:PFAM:PF01590"
/note="PFAM: GAF domain protein;
KEGG: dvl:Dvul_2385 putative GAF sensor protein"
/codon_start=1
/transl_table=11
/product="putative phytochrome sensor protein"
/protein_id="YP_002478756.1"
/db_xref="GI:220903444"
/db_xref="InterPro:IPR003018"
/db_xref="GeneID:7283812"
/translation="MAQDYFRALRDVALVINSSLEPKDVLHKITEQTASTMGCKASTI
RLLDTTGRFLLPSAAHGLSATYLRKGPVEVKRSGMDGEVLAGKTIHLKDAAADGRFQY
PESAKTEGLVSVLSAPLMVDGKAIGLIRVYSAEEREFTPDEQTFMEAVAAISALAIEN
ARLHEALRNNYELMSKHAYSVYED"
misc_feature complement(197312..197734)
/locus_tag="Ddes_0158"
/note="GAF domain; Region: GAF_2; pfam13185"
/db_xref="CDD:205366"
misc_feature complement(197285..197722)
/locus_tag="Ddes_0158"
/note="Domain present in phytochromes and cGMP-specific
phosphodiesterases; Region: GAF; smart00065"
/db_xref="CDD:197499"
gene complement(197973..198314)
/locus_tag="Ddes_0159"
/db_xref="GeneID:7283813"
CDS complement(197973..198314)
/locus_tag="Ddes_0159"
/inference="protein motif:PFAM:PF04519"
/note="PFAM: protein of unknown function DUF583;
KEGG: dvl:Dvul_2189 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478757.1"
/db_xref="GI:220903445"
/db_xref="InterPro:IPR007607"
/db_xref="GeneID:7283813"
/translation="MAKDEIAYLGSDTVYEGKLHFKGTVRIEGKFSGEIVSEGTLNVG
KDALVTGSLDVGELLLSGRFTGEVTARRRVVVYGSGVLEGQVQTPVLLTEEGGIIEGQ
VSMQGCGKVKA"
misc_feature complement(198000..198290)
/locus_tag="Ddes_0159"
/note="Polymer-forming cytoskeletal; Region: Bactofilin;
pfam04519"
/db_xref="CDD:203037"
gene complement(198340..199446)
/locus_tag="Ddes_0160"
/db_xref="GeneID:7283814"
CDS complement(198340..199446)
/locus_tag="Ddes_0160"
/inference="protein motif:TFAM:TIGR02210"
/note="TIGRFAM: rod shape-determining protein RodA;
PFAM: cell cycle protein;
KEGG: dvl:Dvul_2188 rod shape-determining protein RodA"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein RodA"
/protein_id="YP_002478758.1"
/db_xref="GI:220903446"
/db_xref="InterPro:IPR001182"
/db_xref="InterPro:IPR011923"
/db_xref="GeneID:7283814"
/translation="MDKSLFSYINWGLLACMLLLYLVGVGNLYSASGTRVETGLAFNS
FYQRQIIWGLCGLACMLLAMTFDYRQLRNLAWPFFFLTMLLLLLVPIAGKTVYGAKRW
LSLGFMSVQPSELAKLSVLVLAARLLARDGRPLGWKDFISIAFICLLPCALIVVQPDL
GTTMLILLILAGMILFHGLKGYVLKTCLLAVPCFGAFMWLVGMHDYQRQRILTFLDPT
TDPRGTGYHIIQSRIAIGSGELWGKGFKEGTQSQLRFLPERHSDFAVAVFGEEWGFVG
CVALVTLFCLFLLSIFSTAAQAKDRFGSMLVVGVFFYFFWQILINMGMVIGIMPVVGI
PLPFISYGGSATVVNFTLLGIVLNVSMRRFMFKG"
sig_peptide complement(199354..199446)
/locus_tag="Ddes_0160"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.984) with cleavage site probability 0.966 at
residue 31"
misc_feature complement(198355..199419)
/locus_tag="Ddes_0160"
/note="rod shape-determining protein RodA; Region:
rodA_shape; TIGR02210"
/db_xref="CDD:211724"
gene complement(199816..201738)
/locus_tag="Ddes_0161"
/db_xref="GeneID:7283815"
CDS complement(199816..201738)
/locus_tag="Ddes_0161"
/EC_number="2.4.1.129"
/inference="protein motif:TFAM:TIGR03423"
/note="KEGG: dvu:DVU0786 penicillin-binding protein;
TIGRFAM: penicillin-binding protein 2;
PFAM: penicillin-binding protein transpeptidase;
Penicillin-binding protein dimerisation domain"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 2"
/protein_id="YP_002478759.1"
/db_xref="GI:220903447"
/db_xref="InterPro:IPR001460"
/db_xref="InterPro:IPR005311"
/db_xref="InterPro:IPR017790"
/db_xref="GeneID:7283815"
/translation="MLRKIKKNSLLGAKDKNARKGIRSWLKIQVEGERYQPPRGGIIL
LQILVGLLFFVLVVRFWYLQMHRGAEFAQQAQNNRLRIERIFAPRGRIMDDQGKVLAD
NRTAYGLSLVREDCPDIPATLAQISAWSGIPLPQIWEKFRQDRFKVKSFEPLLMITDI
DFDLVARIESEIHAWPGLEIVVRTKRSYPEKDLFAHVLGYVAEANEQEMAADSALAMG
DLVGKQGLELELEKQLRGRKGLYDVEVDAHSRVLGKFLREEPRGGKEIRLSLDRDLQE
AAWNALGGEAGCVVVMEPDTGKLRALVTSPAYDNNLFAAGISQRDWDALRTNSRFPLQ
NRVIQSVYPPGSVWKLVIAAMLLERGVNPRESVFCPGQVKLGNQIFRCWKRGGHGSQD
MQSALVNSCDVYFYQMGERMGIDKIEEFAKASGFGRPTGIDLPHEKSGLVPSKEWKKR
RFGRPWVRGETYNVSIGQGYTLVTPVQMAVFVSALLNGGNLLKPQLLDDAQREIKGNI
PAKAATLNFVVEAMRKTATGGTARIVNRKDADMGGKTGTAQVVKLKMAAGDRRLRTHE
MEYAQRDHAWITTWGVKDGKAYVVVVMVEHGGGGSSVAGPVAKKVYEHLFGPDPGSPA
APAPVPAPASPGERTD"
misc_feature complement(199891..201558)
/locus_tag="Ddes_0161"
/note="penicillin-binding protein 2; Region: pbp2_mrdA;
TIGR03423"
/db_xref="CDD:200273"
misc_feature complement(200980..201486)
/locus_tag="Ddes_0161"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature complement(199975..200880)
/locus_tag="Ddes_0161"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene complement(201722..202192)
/locus_tag="Ddes_0162"
/db_xref="GeneID:7283816"
CDS complement(201722..202192)
/locus_tag="Ddes_0162"
/inference="similar to AA sequence:KEGG:Dvul_2186"
/note="KEGG: dvl:Dvul_2186 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478760.1"
/db_xref="GI:220903448"
/db_xref="GeneID:7283816"
/translation="MSTLRDVIWWLCFLAAAVGIQAFVPGLDVMTVGLIILLQERDYK
NMLWLLPLFILLQEGMGTRVFGGVIVWYIAVIVLFRMGRWLFEAENFLFIFLLSACLG
AAYFGVAWLMAPLQDLPFNFQDTLDKSLIQAIFIPFAWKLLVATRHGKAHAAEN"
gene complement(202189..203079)
/locus_tag="Ddes_0163"
/db_xref="GeneID:7283817"
CDS complement(202189..203079)
/locus_tag="Ddes_0163"
/inference="protein motif:TFAM:TIGR00219"
/note="in some organisms this protein is a transmembrane
protein while in others it is periplasmic; involved in
some organisms with other components of the MreBCD complex
and with penicillin binding proteins in the periplasm or
cell wall"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreC"
/protein_id="YP_002478761.1"
/db_xref="GI:220903449"
/db_xref="InterPro:IPR005223"
/db_xref="InterPro:IPR007221"
/db_xref="GeneID:7283817"
/translation="MTLRRIIILAGILLILFLAMYSWNQRTRALDNLAAEVGLELAGA
VLKPLRAVQDSAQDMWDRYFDLVAVREENEILRQRVDEMEARLLANGEDMAELKRLRA
LIQLPVDQSWRPLGARVLSGRMGPNAVLDSVTISRGYSTGGRPGTPLVTHLGLVGRVL
KASAHSAIALLLTDPGSRIAVFSQESRAPGILAGQGTGQPLEVNFVQRATRVNEGEIL
ITSGLDGKYPKGIPVARVLSVAPSDYTQFMAIKAEPLVDLHHLEEVLLLEPTGVAPPP
DLGAPPKEIHGPPTPGRPAP"
sig_peptide complement(203005..203079)
/locus_tag="Ddes_0163"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.988) with cleavage site probability 0.700 at
residue 25"
misc_feature complement(202324..202929)
/locus_tag="Ddes_0163"
/note="rod shape-determining protein MreC; Provisional;
Region: PRK13922"
/db_xref="CDD:184397"
misc_feature complement(202348..202704)
/locus_tag="Ddes_0163"
/note="rod shape-determining protein MreC; Region: MreC;
pfam04085"
/db_xref="CDD:202883"
gene complement(203485..204525)
/locus_tag="Ddes_0164"
/db_xref="GeneID:7283818"
CDS complement(203485..204525)
/locus_tag="Ddes_0164"
/inference="protein motif:TFAM:TIGR00904"
/note="functions in MreBCD complex in some organisms"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein MreB"
/protein_id="YP_002478762.1"
/db_xref="GI:220903450"
/db_xref="InterPro:IPR001023"
/db_xref="InterPro:IPR003494"
/db_xref="InterPro:IPR004753"
/db_xref="GeneID:7283818"
/translation="MSKILDFALGMFSNDLAIDLGTANTCVYVKGHGIVLREPSVVAV
KKDPRGNNVVLAVGQDAKRMLGRTPGNIWAIRPMKDGVIADFEVTEAMLRHFIAKVHN
SRRLVRPRIMICVPTGITQVEKRAVKESAQSAGAREVYLIEEPMAAAIGADLPIQEPT
SNMVVDIGGGTTEVAVISLSGIVYSRSVRVGGDKMDEAIMTHVKRKYNMLIGESSAEE
IKIKIASAYPLDPEQQIEVKGRDLVTGIPQNIIITSEEVRKAISEQVDSIVQAVRIAL
EQTPPELAADIVDRGIVLTGGGALLKGLDQLLREETSLPITVVDDPLSTVVVGTGKAM
DNLHILKEVCID"
misc_feature complement(203488..204501)
/locus_tag="Ddes_0164"
/note="rod shape-determining protein MreB; Provisional;
Region: PRK13927"
/db_xref="CDD:184401"
misc_feature complement(203512..204480)
/locus_tag="Ddes_0164"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature complement(order(203548..203550,203557..203559,
203623..203628,203632..203640,203863..203868,
203875..203877,203947..203952,204013..204024,
204028..204030,204094..204096,204283..204285,
204454..204465,204469..204471))
/locus_tag="Ddes_0164"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature complement(order(204028..204030,204469..204471))
/locus_tag="Ddes_0164"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature complement(order(203512..203514,203584..203586,
203680..203682,203689..203691,203779..203781,
203788..203790,203812..203814,203881..203883,
203887..203889,203983..203985,204043..204045,
204049..204051,204310..204312,204334..204336,
204391..204393))
/locus_tag="Ddes_0164"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature complement(order(203566..203568,203575..203577,
203581..203583,203656..203664,204040..204042,
204064..204069))
/locus_tag="Ddes_0164"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 204767..205810
/locus_tag="Ddes_0165"
/db_xref="GeneID:7283819"
CDS 204767..205810
/locus_tag="Ddes_0165"
/inference="protein motif:TFAM:TIGR01212"
/note="KEGG: dvl:Dvul_2183 putative radical SAM protein;
TIGRFAM: conserved hypothetical protein;
PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478763.1"
/db_xref="GI:220903451"
/db_xref="InterPro:IPR005911"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:7283819"
/translation="MLRWHTLAVYFRRKYGTRVQKIPLDAGASCPNRDGSLSHRGCTF
CNASGSGSGLGVRGFSLEEQWRAWLEKYRATDADRAFMAYLQSYSNTYGPPERLQLLL
QQVAALPGCLGVAVGTRPDCLGPHKLDMLAACRINASGNGPDGVHHYTRNAHGDNGYK
KGAGGMENGGLSEVWLELGLQSAHNATLRRINRGHDTACSETAVRQAAERGLAVCGHL
MAGLPGEDEAAFLESLDWALSLPLSGLKLHNVYVPRGTSLARLYEEGGYHPLARDEYV
DLLCTALPRIPSAMVMHRVQSDPAPGELLAPAWAAEKRGVITDLRRALTARDLWQGKA
ADVPDMRPEWYGG"
misc_feature 204773..205780
/locus_tag="Ddes_0165"
/note="Predicted Fe-S oxidoreductase [General function
prediction only]; Region: COG1242"
/db_xref="CDD:31435"
gene complement(205832..207637)
/locus_tag="Ddes_0166"
/db_xref="GeneID:7283820"
CDS complement(205832..207637)
/locus_tag="Ddes_0166"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
chemotaxis sensory transducer; Cache type 2 domain
protein;
KEGG: dvl:Dvul_0339 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="Cache sensor-containing methyl-accepting
chemotaxis sensory transducer"
/protein_id="YP_002478764.1"
/db_xref="GI:220903452"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR013163"
/db_xref="GeneID:7283820"
/translation="MNVKAWLVTLCLAFTLGMGILFFSNMYISKLVLDDITLPQISAA
LKAKYEYGLKHTVELAAQTLARSLEDAASPEEKYALIGELTDFQRFFPDEEGYLFTYK
TDGTRINVPINKSQNGKNFIDLKDPNGVPFIRDLIDAARKGGGFVLYHFEKAGAGVQP
KLSYAQLVPGTDVIIGTGVYIDGVDKERSRITSLVTESQNHYSRVQAALGAGILALIL
CIAWGVTRRICPPLLQLTAEAEEVAAGRLDHLTTIKPSSPLEIRALHASLKIMITNLH
SRVQEAAQKTLEAAEALEQAKTAQDRAEKAQAQAETARRDGMLAAAGQLEGIAGVLSS
ASTELSAQIEQSDKGAAESSQRLAEAATAMNEMNATVQEVAQNAGMASGASMDTRDKA
LTGARIVHDAMNSIARVQEHSLALKDDMARLNEHALAISRIMNVISDIADQTNLLALN
AAIEAARAGDAGRGFAVVADEVRKLAEKTMTSTSDVAEAIRAIQESTRQSMTGVENAV
NAIGEATGLAGQSGAALEGIVTTIEETTDQINAIAAASEEQSAASEEINRSIVEVNDM
SRHTAIAMGEAASAVTGLAAQAQKLAELIQDMKRA"
misc_feature complement(207239..207481)
/locus_tag="Ddes_0166"
/note="Cache is an extracellular domain that is predicted
to have a role in small-molecule recognition in a wide
range of proteins; Region: Cache_2; smart01049"
/db_xref="CDD:198117"
misc_feature complement(206807..206980)
/locus_tag="Ddes_0166"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature complement(order(206813..206818,206825..206830,
206834..206839,206846..206851,206855..206860,
206912..206914,206918..206923,206930..206935,
206939..206944))
/locus_tag="Ddes_0166"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(205850..206626)
/locus_tag="Ddes_0166"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(206027..206527)
/locus_tag="Ddes_0166"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(206033..206035,206042..206047,
206054..206056,206063..206068,206075..206080,
206084..206089,206096..206098,206105..206110,
206117..206119,206126..206131,206168..206173,
206180..206185,206189..206194,206201..206206,
206213..206215,206222..206227,206234..206236,
206243..206245,206255..206257,206276..206278,
206285..206287,206297..206299,206306..206311,
206318..206320,206327..206329,206336..206341,
206348..206353,206360..206362,206369..206374,
206378..206380,206390..206395,206399..206404,
206411..206413,206420..206425,206432..206437,
206444..206446,206453..206458,206465..206467,
206474..206479,206483..206488,206495..206497,
206504..206509,206516..206521))
/locus_tag="Ddes_0166"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(206210..206311)
/locus_tag="Ddes_0166"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(208332..209456)
/locus_tag="Ddes_0167"
/db_xref="GeneID:7283821"
CDS complement(208332..209456)
/locus_tag="Ddes_0167"
/inference="protein motif:PFAM:PF03459"
/note="PFAM: integrase family protein; TOBE domain
protein;
KEGG: dvl:Dvul_2790 TOBE domain-containing protein"
/codon_start=1
/transl_table=11
/product="TOBE domain-containing protein"
/protein_id="YP_002478765.1"
/db_xref="GI:220903453"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR004606"
/db_xref="InterPro:IPR005116"
/db_xref="GeneID:7283821"
/translation="MEKNKNREEMAALLRTLSSADRAWLRQRLMRRDSAALLQDTGRI
SPRELLAVESWLWERAAAARGPREKRPRLRMWLIFMLLRYAALRLVEIFSLKPGHMDL
QEGIIRLPDNNGSPGREVPLPLTVSRRLRRVLEDPALFPESHDLLRCDASYVRRCLQQ
CGAACGLPKGLLSARALRHSRALELGRQGLPLPVVDIFLGRRAAPGQSGIVRCDLQEA
RRLLREQLQRERPMKTSARNVFQGRITSLRQTGIMVEVAMRTAGGLRIVSLITDESCR
TLALAEGKLVNASVKAPWVLVAPGEMPKNTAPPAENCFVGVVERVREDQMVAEVLVAL
PEGSLVCAIQSGGQNPACGLKAGQKATVLFKSFSVILNLD"
misc_feature complement(208857..209255)
/locus_tag="Ddes_0167"
/note="DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain. The
tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family...; Region: INT_REC_C; cd01182"
/db_xref="CDD:29503"
misc_feature complement(order(208923..208925,208932..208934,
209118..209120,209193..209195))
/locus_tag="Ddes_0167"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29503"
misc_feature complement(order(208923..208925,208932..208934,
209193..209195))
/locus_tag="Ddes_0167"
/note="active site"
/db_xref="CDD:29503"
misc_feature complement(order(208923..208925,209193..209195))
/locus_tag="Ddes_0167"
/note="catalytic residues [active]"
/db_xref="CDD:29503"
misc_feature complement(order(208932..208937,209118..209120,
209190..209195))
/locus_tag="Ddes_0167"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29503"
misc_feature complement(208344..>208763)
/locus_tag="Ddes_0167"
/note="DNA-binding transcriptional regulator ModE;
Provisional; Region: PRK10676"
/db_xref="CDD:182640"
misc_feature complement(208560..208763)
/locus_tag="Ddes_0167"
/note="molybdenum-pterin binding domain; Region: Mop;
TIGR00638"
/db_xref="CDD:161972"
gene 209612..210364
/locus_tag="Ddes_0168"
/db_xref="GeneID:7283822"
CDS 209612..210364
/locus_tag="Ddes_0168"
/inference="protein motif:TFAM:TIGR01256"
/note="TIGRFAM: molybdenum ABC transporter, periplasmic
molybdate-binding protein;
PFAM: extracellular solute-binding protein family 1;
KEGG: dvu:DVU0177 molybdenum ABC transporter, periplasmic
molybdenum-binding protein"
/codon_start=1
/transl_table=11
/product="molybdenum ABC transporter periplasmic
molybdate-binding protein"
/protein_id="YP_002478766.1"
/db_xref="GI:220903454"
/db_xref="InterPro:IPR005950"
/db_xref="InterPro:IPR006059"
/db_xref="GeneID:7283822"
/translation="MKKSFFSRIFLTLACVGLLSLPAHAAEMTVSGAASLTNAFTELK
DMFEKQHPGLKVNVNFAASNPLLKQIQEGAPVDVFASADQATMDKAAAAKVVDPATRK
NFAENDLVLIVPAGSKKPAALADLKKFKKVAIGNPDSVPVGRYTKAALTDAKLWDAMQ
PALIQGNSVRQVLDYVARGEVDAGFVYATDARQMADKVDVVMVVGGHEPVTYPIAVAL
TGTNPKMGQEFLNFVLSPEGLAVLAKYGFSKP"
misc_feature 209612..210361
/locus_tag="Ddes_0168"
/note="ABC-type molybdate transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: ModA; COG0725"
/db_xref="CDD:31069"
sig_peptide 209612..209689
/locus_tag="Ddes_0168"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 26"
misc_feature 209708..210349
/locus_tag="Ddes_0168"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene 210553..211233
/locus_tag="Ddes_0169"
/db_xref="GeneID:7283823"
CDS 210553..211233
/locus_tag="Ddes_0169"
/inference="protein motif:TFAM:TIGR02141"
/note="TIGRFAM: molybdate ABC transporter, inner membrane
subunit;
PFAM: binding-protein-dependent transport systems inner
membrane component;
KEGG: dvl:Dvul_2788 molybdate ABC transporter, inner
membrane subunit"
/codon_start=1
/transl_table=11
/product="molybdate ABC transporter inner membrane
subunit"
/protein_id="YP_002478767.1"
/db_xref="GI:220903455"
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR011867"
/db_xref="GeneID:7283823"
/translation="MDLDGISIWSPLELSLRVAGTATLVSFVAATLMAWLLARKKGPM
PALLDALCTLPLVLPPTVLGYYLILLVGRRGLLGHWLAEMGINLIFSWKGAVVAATVV
VFPLIYKSARAALEQVDSHLENAARTLGASEWRVFVSVSLPLAWKGIFAGLMLAFARG
MGEFGATLMIAGNIPGKTQTLALAIYDAFQAGNDVQATWLVIVTSLACVSMLMAAELL
LKLKRRRR"
misc_feature 210571..211131
/locus_tag="Ddes_0169"
/note="ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones]; Region: CysU; COG0555"
/db_xref="CDD:30901"
misc_feature 210595..211179
/locus_tag="Ddes_0169"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(210634..210639,210646..210651,210664..210666,
210694..210705,210709..210738,210745..210750,
210754..210756,210853..210858,210862..210864,
210868..210870,210877..210882,210886..210888,
210898..210903,210910..210912,210961..210963,
211003..211008,211015..211017,211036..211047,
211054..211059,211096..211101,211129..211134,
211141..211146,211150..211155,211162..211167,
211174..211179)
/locus_tag="Ddes_0169"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(210712..210756,211036..211053)
/locus_tag="Ddes_0169"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(210754..210756,210838..210840,211054..211056,
211090..211092,211099..211101,211129..211131)
/locus_tag="Ddes_0169"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(210913..210951,210967..210972,210982..210984)
/locus_tag="Ddes_0169"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 211230..212006
/locus_tag="Ddes_0170"
/db_xref="GeneID:7283824"
CDS 211230..212006
/locus_tag="Ddes_0170"
/inference="protein motif:PFAM:PF00005"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: dvl:Dvul_2789 ABC transporter related"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_002478768.1"
/db_xref="GI:220903456"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR017871"
/db_xref="GeneID:7283824"
/translation="MISLRLYKSFKNAAVPFSLDVDYEIGDEHKNVVLFGPSGSGKSL
TMQCLAGLVRPDSGHIRLGGRTLYDGQANVFIPAQRRRIGYMFQDYALFPHLTLLQNV
AYSGTGLWPWRVCPAQQERAQAVLERFGIGHLARNLPSQLSGGQRQRAALARALNAGP
ELLLLDEPFSALDPLLRERLREELLELIAGLTIPAVIITHDPGDVDAFAGSLILYDHG
HARLVPDYTELRRGFGSPGHCLRHLQEQAAAAGCPAEQAF"
misc_feature 211230..211943
/locus_tag="Ddes_0170"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature 211230..211883
/locus_tag="Ddes_0170"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 211335..211358
/locus_tag="Ddes_0170"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(211344..211349,211353..211361,211491..211493,
211725..211730,211827..211829)
/locus_tag="Ddes_0170"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 211482..211493
/locus_tag="Ddes_0170"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 211653..211682
/locus_tag="Ddes_0170"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 211713..211730
/locus_tag="Ddes_0170"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 211737..211748
/locus_tag="Ddes_0170"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 211815..211835
/locus_tag="Ddes_0170"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 213021..214136
/locus_tag="Ddes_0171"
/db_xref="GeneID:7283825"
CDS 213021..214136
/locus_tag="Ddes_0171"
/EC_number="5.1.1.1"
/inference="protein motif:TFAM:TIGR00492"
/note="KEGG: mta:Moth_2167 alanine racemase;
TIGRFAM: alanine racemase;
PFAM: alanine racemase domain protein"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_002478769.1"
/db_xref="GI:220903457"
/db_xref="InterPro:IPR000821"
/db_xref="InterPro:IPR001608"
/db_xref="InterPro:IPR011079"
/db_xref="GeneID:7283825"
/translation="MVSFDRPVWAEIDLSAFRHNMRQIKSLLQPGTIFCPIIKADGYG
HGAVPLAHEAVAMGAGYLGVAILDEAAALRAAGITLPILILGYTPPQAAAFVVSNHIT
QTIFSKEQADALSAAASNLGITVKVHVKVDTGMTRIGVRPEEAAAFCSYVAGLENVHL
EGMFTHFASSDSADHAYCLEQFGRFTAAIAAVEASGIRLGIRHCANSAAILSLPEGHL
DMVRAGIILYGLKPSDECPMPIDLRPVMRLKARLAMVKQVPPGVGVSYGSIYHTQKES
SLATIPIGYADGYTRMLSRKAQVLLRGQRAPVVGRICMDQCMVDVSHVPQAAVGDEVL
LFGGPDLPADEIAAHLGTINYEVVCMVGKRVPRVYVE"
misc_feature 213036..214130
/locus_tag="Ddes_0171"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 213039..214130
/locus_tag="Ddes_0171"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430"
/db_xref="CDD:143481"
misc_feature order(213129..213131,213135..213137,213147..213149,
213273..213275,213408..213410,213429..213431,
213516..213518,213636..213641,213684..213695,
213816..213818,213873..213875,213957..213962,
214083..214085)
/locus_tag="Ddes_0171"
/note="active site"
/db_xref="CDD:143481"
misc_feature order(213129..213131,213135..213137,213147..213149,
213273..213275,213429..213431,213516..213518,
213636..213641,213684..213695,214083..214085)
/locus_tag="Ddes_0171"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143481"
misc_feature order(213135..213140,213213..213215,213222..213227,
213336..213341,213423..213434,213516..213518,
213522..213524,213777..213788,213792..213794,
213804..213809,213813..213821,213858..213860,
213873..213875,213891..213893,213963..213968,
214071..214076,214083..214088,214110..214112)
/locus_tag="Ddes_0171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143481"
misc_feature order(213135..213137,213147..213149,213429..213431,
213516..213518,213816..213818,213873..213875,
213957..213962,214083..214085)
/locus_tag="Ddes_0171"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143481"
misc_feature order(213135..213137,213816..213818)
/locus_tag="Ddes_0171"
/note="catalytic residues [active]"
/db_xref="CDD:143481"
gene 214362..215768
/locus_tag="Ddes_0172"
/db_xref="GeneID:7283826"
CDS 214362..215768
/locus_tag="Ddes_0172"
/inference="protein motif:PFAM:PF00324"
/note="PFAM: amino acid permease-associated region;
KEGG: btl:BALH_0632 amino acid permease, proline-specific
permease"
/codon_start=1
/transl_table=11
/product="amino acid permease-associated protein"
/protein_id="YP_002478770.1"
/db_xref="GI:220903458"
/db_xref="InterPro:IPR004840"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:7283826"
/translation="MSSENKGVTGENLTRGLESRHIQLIAIGGAIGVGLFLGSSTAIR
TAGPGLLLSYLIGGIIIFFVMRALGEVAVAYPVSGSFSAYANMFMGPRMGYITGWTYW
FVWIVTGMAEITAVGVYCTFWWPDLPQWIPALLALVCMTTVNLISVKLFGEFEFWFAL
IKVVVIIAMIAIGLGIILFGIGHGGVPTGISNLYALEGGFLPNGMTGVFMALSMVMFA
FVGIELIGVTAGEACNPEKSIPSAINKVLWRILLFYIGALFVIMSIFPWNEIGVHGSP
FVLTFKNIGIAAAAGIINFVVATAALSSCNSGIYSNGRMLYNLALQKRAPQYFAQTSR
ANVPARGILVSSCIMLIGVFLNYIVPEEVFLIVTSVATFAVVWIWATIIIVQMKSRQS
KSPEEAAAVKYKMPWYPYSNYFALAGLVCVYVILSLGESTRIAMIVGPIWIIGINVVY
NLLGWNKKDAQPGLGAES"
misc_feature 214368..215735
/locus_tag="Ddes_0172"
/note="Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism]; Region: AnsP;
COG1113"
/db_xref="CDD:31310"
gene 215970..217142
/locus_tag="Ddes_0173"
/db_xref="GeneID:7283827"
CDS 215970..217142
/locus_tag="Ddes_0173"
/EC_number="1.6.1.2"
/inference="protein motif:PRIAM:1.6.1.2"
/note="PFAM: alanine dehydrogenase/PNT domain protein;
KEGG: pgn:PGN_1120 putative NADPH-NAD transhydrogenase"
/codon_start=1
/transl_table=11
/product="NAD(P)(+) transhydrogenase"
/protein_id="YP_002478771.1"
/db_xref="GI:220903459"
/db_xref="InterPro:IPR007698"
/db_xref="InterPro:IPR007886"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:7283827"
/translation="MKFQGMTIGVPKEIMHGERRVSATPDTVKKMVADGATVLVEKGA
GDGAFFADSAYVEAGGKIIEDVQEIFAKADVILKVKEPLFNDKVNKHEAEMVRDGQYL
ITFLHPAAPVNHEMMKKLAATGVISITLDGIPRISRAQGMDALTSMSTVAGYKGVLMA
ANRLAKFMPMVGTAVGVIKPANVLVIGTGVAGLQAVATAKRLGAVVTAVDIRPDAREQ
SMSLGAKPFDVGVPAEVAIGEGGYAQRLSDEWLNKEREALKPLVKDADIIILSALIPG
KLAPILITKEMVASMAPGSSIVDISIDQGGNCELTEAGEVVVKHGVTIDGTKNIPGMM
PTSSTWMFANNVYQLLAFLAQDGKIVLDRTDPIIESTLSTIDKQIVHRGAREAMGL"
misc_feature 215988..217103
/locus_tag="Ddes_0173"
/note="NAD/NADP transhydrogenase alpha subunit [Energy
production and conversion]; Region: PntA; COG3288"
/db_xref="CDD:33098"
misc_feature 215994..216425
/locus_tag="Ddes_0173"
/note="Alanine dehydrogenase/PNT, N-terminal domain;
Region: AlaDh_PNT_N; pfam05222"
/db_xref="CDD:203211"
misc_feature 216450..216941
/locus_tag="Ddes_0173"
/note="Alanine dehydrogenase/PNT, C-terminal domain;
Region: AlaDh_PNT_C; smart01002"
/db_xref="CDD:198070"
gene 217227..217508
/locus_tag="Ddes_0174"
/db_xref="GeneID:7283828"
CDS 217227..217508
/locus_tag="Ddes_0174"
/inference="similar to AA sequence:KEGG:PGN_1121"
/note="KEGG: pgn:PGN_1121 probable NADPH-NAD
transhydrogenase alpha subunit"
/codon_start=1
/transl_table=11
/product="putative NADPH-NAD transhydrogenase alpha
subunit"
/protein_id="YP_002478772.1"
/db_xref="GI:220903460"
/db_xref="GeneID:7283828"
/translation="MTPFTLLAVFVVATLLGYKIISHVPSLLHTPLMSAMNALSGVII
LGAVTATYLAGSTFFTLLGAVAVAMAIVNVFGGFDITHKMLRMVAGKKK"
misc_feature 217275..217487
/locus_tag="Ddes_0174"
/note="Domain of unknown function (DUF3814); Region:
DUF3814; pfam12769"
/db_xref="CDD:205065"
gene 217562..220606
/locus_tag="Ddes_0175"
/db_xref="GeneID:7283829"
CDS 217562..220606
/locus_tag="Ddes_0175"
/EC_number="1.6.1.2"
/inference="protein motif:PRIAM:1.6.1.2"
/note="PFAM: NAD(P) transhydrogenase beta subunit;
KEGG: pgn:PGN_1122 NADPH-NAD transhydrogenase beta
subunit"
/codon_start=1
/transl_table=11
/product="NAD(P)(+) transhydrogenase"
/protein_id="YP_002478773.1"
/db_xref="GI:220903461"
/db_xref="InterPro:IPR004003"
/db_xref="GeneID:7283829"
/translation="MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLA
ILVTMFKDGSLASPALWLAIAVGMTLGLTLSNKVKMIQMPQMVAFLHGIGGGAAAIVS
FLVLTDTGAPSAFERGSACLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIM
AILAVMGFSVLMGTAFPQFLFGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSM
GGVCAAIAGFAVNDPLLVAIGGIIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSA
PAKKAAPAARAAAPARSVESEAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLES
RGAKVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDV
VNPAANTAEGTPIYGMPILKADEAKNIIIANYDDKPGYAGVPNPLYGRDGVILMTGDA
GKTFDRLLAYAQGNGPADEAAPAAGADSREAEAAKLVQNARNVVIVPGYGMALAQAQH
KVKLLADALESRGVKVSYGIHPVAGRMPGHMNVLLAEANVDYENLLEMDTVNPMFAES
DLVVIIGANDVVNPAANTAEGTPIYGMPILKADECRNIIVCNYDDKPGYAGVPNPLYE
RDGVILMTGDAAKTVDRLVSFAQGESPAAPAAGTDSREADAAKLVQNARNVVIVPGYG
MALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDT
VNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKADEAKNIIIANYDDKPGYA
GVPNPLYEREGVILMTGDAGKTFDRLLAYAQGESPAAPAAAPAVSGGADQVDMVLKEA
KNVIIVPGYGMALAQAQHKVKQLADLLESRGAKISYGIHPVAGRMPGHMNVLLAEANV
DYENLLEMDVVNPMFAEADLVIVIGANDVVNPAANTAEGTPIYGMPILKADEAKNIII
CNYDDKPGYAGVDNTLYGRPGVIMMLGDASATMDKLIAMVQK"
misc_feature 217583..218935
/locus_tag="Ddes_0175"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; COG1282"
/db_xref="CDD:31473"
misc_feature 217598..218938
/locus_tag="Ddes_0175"
/note="NAD(P) transhydrogenase beta subunit; Region: PNTB;
pfam02233"
/db_xref="CDD:145408"
misc_feature <219017..219496
/locus_tag="Ddes_0175"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
misc_feature <219548..220036
/locus_tag="Ddes_0175"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
misc_feature <220088..220588
/locus_tag="Ddes_0175"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
gene 220815..221315
/locus_tag="Ddes_0176"
/pseudo
/db_xref="GeneID:7283830"
gene complement(221439..222138)
/locus_tag="Ddes_0177"
/pseudo
/db_xref="GeneID:7283831"
misc_binding complement(222342..222538)
/note="Cobalamin riboswitch as predicted by Rfam
(RF00174), score 80.21"
/bound_moiety="adenosylcobalamin"
gene complement(222806..224845)
/locus_tag="Ddes_0178"
/db_xref="GeneID:7283832"
CDS complement(222806..224845)
/locus_tag="Ddes_0178"
/inference="protein motif:PFAM:PF08238"
/note="PFAM: Sel1 domain protein repeat-containing
protein;
KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing
protein"
/codon_start=1
/transl_table=11
/product="Sel1 domain-containing protein"
/protein_id="YP_002478774.1"
/db_xref="GI:220903462"
/db_xref="InterPro:IPR006597"
/db_xref="GeneID:7283832"
/translation="MRRDKLHDITAPTGSARCKNSPRKVTMPVLWGLAPDGFLSAALR
TFKTRLFALRARCLHVLPLCALILCALPPGAPGTHLAAAYVWGPRPALAAAASIPTPT
PAEPRVHEPVVPVPTVTVPTVQAPVVQAPQLQPSGGQQRPGWSGSSGRSGNAGQAASL
QDAGNDGRQVSPTREIMGFLFGGNTGTASDNATAAPQDTASHPSTSIRNGSLNSTGPN
GAPMPPGPIAVPLPAPVAPPAPVAPVAPAPVPATPGNRVPARAVAEMQPQSPEAQLRQ
KQQNAERERQRQEKARRSSRPAKATETAGPEASRPAADHAGTPTSVPPPAAKEENTPP
DVPETPKAESPFTPGSPEAQANEAYQKGDFAQARAIWQHLADGGDGQSMNNLGVLYDL
GLGVEPDEGRALHWFAQSAAAGHPSGMSNYGRMLEQGRGIEANPHEAARWFDLAARQG
QPEAQYNLGLMYESGHGVSRDYKAAAAWYSRAAAQQQIDALARLGHLYRAGEGVEKNA
ARATLLLYAAAMRGSVHAMKELEAMAEASGVRHGAVLFGQRLDTANRTAMRDTLSRAG
MQPSRQDDAYICDLYIPGALVPGARQMALCYGPGRPAPLGFVELEYAAPHKDTAQSIM
RMVSERFGPPSAGEGDDGHIWNLGTVIVATRYNPAQQTVSLMYMVPAIYHLTRQD"
misc_feature complement(<223247..223873)
/locus_tag="Ddes_0178"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature complement(223601..223708)
/locus_tag="Ddes_0178"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(223496..223600)
/locus_tag="Ddes_0178"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature complement(<223427..223492)
/locus_tag="Ddes_0178"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(225292..226527)
/locus_tag="Ddes_0179"
/db_xref="GeneID:7283833"
CDS complement(225292..226527)
/locus_tag="Ddes_0179"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: bbt:BBta_5626 hydrolase domain-containing
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478775.1"
/db_xref="GI:220903463"
/db_xref="GeneID:7283833"
/translation="MSKILTEAAYLHRYFRVLLLLAVAACLLVLPYTVWWLYKSGDVA
VERAVEDQAAGRFVIFGSGVSQDFVDYKLQLYSRVKPEIAAVGSSRVMQFRSAYFRKS
FLNVGGTAGNLSVLRSTIDAMLAEHRPEALIIGLDFWWFMPQWHPDPFKDEPPTSGSY
NYGLESLKKPWGWLLEGKVSIHDFIAPVLLESAGGFRAGRYGIMAQQTDDGFGPDGSW
YYTAETTGQKRPFDYQFEDTLTQVRHGIKAFFHARPLEGSRDPGGISSAHVDAFAEIY
CRLKSRGIDTFVFISPLSVKVLDSIRQREADYPHLFHLKEALMARGIEVVDFTDPRTF
GSGDCEFVDGFHGGEVTYARMLRDMADRWPALLTYVNMEKINAVIRDWRGHALVFDER
VTDRTETDFNNFNCPKRKP"
misc_feature complement(<225304..>225516)
/locus_tag="Ddes_0179"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene complement(226543..228207)
/locus_tag="Ddes_0180"
/db_xref="GeneID:7283834"
CDS complement(226543..228207)
/locus_tag="Ddes_0180"
/inference="protein motif:PFAM:PF03062"
/note="PFAM: membrane bound O-acyl transferase MBOAT
family protein;
KEGG: gvi:gll0947 alginate O-acetylation protein"
/codon_start=1
/transl_table=11
/product="membrane bound O-acyl transferase MBOAT family
protein"
/protein_id="YP_002478776.1"
/db_xref="GI:220903464"
/db_xref="InterPro:IPR004299"
/db_xref="GeneID:7283834"
/translation="MLFNSYSFLFLFLPLLLLCWRLAAGFGPARLSLVLLLFSTVFYA
LWGLPFLLLLAGILIMNYAFALALSAPENAAAAATGTDGAAHAAPPYAEDGTDGQTTG
SPRNRRQLFSNGGLKRLGCWACSRKGLLTLALILNLLPLLWFKYSWFFAQNLALLMGA
EWNFTPPGLPLGISFYTFIQIAWLVSVYRRQVTPQGFSRHALFSACFPYVISGPIVRY
EQMGPQLDELSGSTSEGLAQGFTLFTIGLAKKVLLADGLAVYANAVFNAAEKAFPVSG
AEAWLGSFCYTFQLYFDFSGYTDMAIGLGLMLGLRLPENFDSPYKATGIVDFWRRWHI
TLSSWLRDFLYIPLGGNRKGRLMQYRNLFLTMLIGGAWHGAGWTFIIWGALHGAMLSI
NHFFRACIKGSLTERVLAALPLRIFFIFFTFMCINLCWVVFRTVSLDGAVTMYGAMFA
GPFTAEAAGLAADHTGLSAMGALAARWLPNNYFQGWMPFALLGISLVLVWAFPNSHEL
LHGKRDGTRPLLSWRPSAAWATGLACLAFVTLVLVSRKATFLYFQF"
sig_peptide complement(228130..228207)
/locus_tag="Ddes_0180"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.958) with cleavage site probability 0.505 at
residue 26"
misc_feature complement(226789..>227778)
/locus_tag="Ddes_0180"
/note="Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane]; Region:
DltB; COG1696"
/db_xref="CDD:31882"
gene complement(228424..228711)
/locus_tag="Ddes_0181"
/db_xref="GeneID:7283835"
CDS complement(228424..228711)
/locus_tag="Ddes_0181"
/inference="protein motif:PFAM:PF00216"
/note="PFAM: histone family protein DNA-binding protein;
KEGG: dvl:Dvul_2538 histone family protein DNA-binding
protein"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_002478777.1"
/db_xref="GI:220903465"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:7283835"
/translation="MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDR
ALLISGFGKFECYDKASRKGRNPKTDETITLPPRKVMVFRLSRKFRSELNP"
misc_feature complement(228442..228696)
/locus_tag="Ddes_0181"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(228451..228453,228460..228462,
228466..228468,228478..228480,228508..228519,
228526..228528,228532..228537,228541..228543,
228553..228555,228562..228567,228571..228573,
228577..228579,228622..228624,228688..228696))
/locus_tag="Ddes_0181"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(228457..228459,228463..228465,
228475..228480,228544..228546,228559..228564,
228571..228585,228595..228600,228607..228612,
228619..228621,228661..228663,228673..228675,
228682..228684,228691..228696))
/locus_tag="Ddes_0181"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
gene 228936..230141
/locus_tag="Ddes_0182"
/db_xref="GeneID:7283836"
CDS 228936..230141
/locus_tag="Ddes_0182"
/inference="protein motif:PFAM:PF04055"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: lip:LI0429 coproporphyrinogen III oxidase-like
protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_002478778.1"
/db_xref="GI:220903466"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:7283836"
/translation="MKTVSARIFSLTLPWVLPAAQACALVPVFLPFRGCPVRCVFCAQ
DVQTGSVSAACPAEAVSGTAFAPRTGTAPAAAAGRASLPSPLPPLPVQPLDVLLHETR
GNLERRHTLGLPPAELAFYGGTFTAMPDGDQAACLDLAGLALERGWIRSFRCSTRPDC
VTAPVLERLRAAGCRCVELGVQSFSDAALAASSRGYDGATALRACAHVKDAGLALGVQ
LLPGMPGHAPADFLADVPQALRAGADMLRFYPCLVLEGTALARMWRQGTYSPWPLEAT
LDLLAQGWLMAQAAHVPVIRMGLAPEAALDGAVLAGPVDRSLGSRVMGRALLLAVRRA
VEAAGETSGASCVPVLSELRLPGACQGYIWGTRGELRPAWAGLGLEPKNARFDAVCGQ
TLFLTLTCS"
sig_peptide 228936..229010
/locus_tag="Ddes_0182"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.975) with cleavage site probability 0.512 at
residue 25"
misc_feature 229032..229775
/locus_tag="Ddes_0182"
/note="Elongator protein 3, MiaB family, Radical SAM;
Region: Elp3; smart00729"
/db_xref="CDD:197846"
misc_feature <229269..229739
/locus_tag="Ddes_0182"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(229296..229298,229302..229307,229401..229406,
229473..229475,229593..229595,229683..229688)
/locus_tag="Ddes_0182"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 230563..232653
/locus_tag="Ddes_0183"
/db_xref="GeneID:7283837"
CDS 230563..232653
/locus_tag="Ddes_0183"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
chemotaxis sensory transducer;
KEGG: dvl:Dvul_2346 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478779.1"
/db_xref="GI:220903467"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:7283837"
/translation="MKMGIMSKMMLNILVPSMLGLTAVCVFSYWRAETSLTQQIAHEL
NTVIDKQVHGLATVQQMTRGLMKTSAESNHVKNALLRRGSSQSVLEVVYDGEPASYGS
EDVQNVLDDLTEHFGIVDGAGLLDLDGRVIAHTSRDLVGRGMGDRRSVNVALQGSMGI
ENLPNHTGELATIVTTPVMKDGKTQGVLYAYMSLPRLSAGTTDTIKIGKDGFCAVYDS
EGRVLMHPDKSLIGTDGSNQPHVRAALGNGNGRVVYDHNDTEMVAYYRHMPESNWHVV
LVGDRDELLEPARNLLKENMLMGGVAILVVGCIIIVVARGIARSIKAGENYVQAVAGG
NFNPSPQEETELAQAARRGDEIGGLSQGIQGMVGKLRSLFSESEEKNHQAEIAKTEAE
EAMGEAQEARKQAENARQEGMLAAAGQLEAVAGIISSASTQLSAQIEQSDRSAAESSQ
RLSEAATAMNQMNATVQEVAHNAAAASSASRETKEKAHAGAQIVEQAVRSIEAVRHVS
EELKSDMAELGDHAQSITRIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADE
VRKLAEKTMASTHDVSAAIQAIQNSTAKSMSSADNAVNQIAQATNYASESGQALREIV
ATVEGTSDQVNAIATASEEQSAASDEINQSIVQVNEMSRQSAVAMAEATQAVAELAAQ
AHTLKNLIAQMKLG"
sig_peptide 230563..230649
/locus_tag="Ddes_0183"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.802) with cleavage site probability 0.767 at
residue 29"
misc_feature 231061..231261
/locus_tag="Ddes_0183"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature 231451..231678
/locus_tag="Ddes_0183"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature 231859..232557
/locus_tag="Ddes_0183"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 231940..232527
/locus_tag="Ddes_0183"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(231964..231969,231976..231981,231988..231990,
231997..232002,232006..232011,232018..232020,
232027..232032,232039..232041,232048..232053,
232060..232065,232072..232074,232081..232086,
232090..232095,232105..232107,232111..232116,
232123..232125,232132..232137,232144..232149,
232156..232158,232165..232167,232174..232179,
232186..232188,232198..232200,232207..232209,
232228..232230,232240..232242,232249..232251,
232258..232263,232270..232272,232279..232284,
232291..232296,232300..232305,232312..232317,
232354..232359,232366..232368,232375..232380,
232387..232389,232396..232401,232405..232410,
232417..232422,232429..232431,232438..232443,
232450..232452,232459..232464,232468..232473,
232480..232485,232489..232494,232501..232503,
232510..232515,232522..232524)
/locus_tag="Ddes_0183"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 232174..232275
/locus_tag="Ddes_0183"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 233201..233575
/locus_tag="Ddes_0184"
/db_xref="GeneID:7283838"
CDS 233201..233575
/locus_tag="Ddes_0184"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478780.1"
/db_xref="GI:220903468"
/db_xref="GeneID:7283838"
/translation="MSSMGAEGMRKVCWFFHISLPPVGGLAGLATHCRFVRLCCFPPG
FSRAETLAGLPRHRAFSCGLDSTVSLCLPFRGGVAHSRNLVYTALALFCRFAYALSGV
CLYWQAGVGSRFVRYWNHIKFL"
gene complement(233951..234406)
/locus_tag="Ddes_0185"
/db_xref="GeneID:7283839"
CDS complement(233951..234406)
/locus_tag="Ddes_0185"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_0015 zinc resistance-associated
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478781.1"
/db_xref="GI:220903469"
/db_xref="GeneID:7283839"
/translation="MRKTSFLLTFLCGMLLPAHSPAQNQQGEALPPPAMRTAMSTQDV
WLDYLPPSQRMKAQLIMEEYRPKVRDLRQRIFSKKSELEELSYNRNTSPDTLPRLGRE
LQVLRDELQALLIHADQRMRREVGIPLGTLASRGCSMEFTSKDTIEGVQ"
sig_peptide complement(234332..234406)
/locus_tag="Ddes_0185"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.709 at
residue 25"
misc_feature complement(234014..>234262)
/locus_tag="Ddes_0185"
/note="CpxP component of the bacterial Cpx-two-component
system and related proteins; Region: CpxP_like; cl01482"
/db_xref="CDD:207426"
gene 234547..236112
/locus_tag="Ddes_0186"
/db_xref="GeneID:7283840"
CDS 234547..236112
/locus_tag="Ddes_0186"
/inference="protein motif:PFAM:PF02518"
/note="PFAM: ATP-binding region ATPase domain protein;
histidine kinase A domain protein;
KEGG: dvl:Dvul_0016 signal transduction histidine kinase,
nitrogen specific, NtrB"
/codon_start=1
/transl_table=11
/product="sensor protein ZraS"
/protein_id="YP_002478782.1"
/db_xref="GI:220903470"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:7283840"
/translation="MASARCMMTLRAHDAISTGMTSAHNNPDGESRKEPPQGWGGLEL
YASMKGMRGVSRTPLGLLMGGAALVLALMISLLAYISIERSEAAMARLLAEKGSSLII
AFESILRSGMRSEAGVRLQVLLEEMAASPGIVFVSVTMPDGIIVAHSNRVRLGEILKV
EDREMDETRMRDLNPGMLAQWGIMQMEGQRVFVVYRQFSPGMADMPRGYPVPIIFLGL
EISPFEITRSQNRDYVAMLSSVTLLVGLACLLALYYAERARESRQQQRKAEVEVRRLE
AEVRRKEKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGQRFPEGSEDRAAANVMVSEV
DRLNRVIMDLIGLSRPSDVCPRPGRLADVVEHVMRLIRQDAEKRGVEVECRVAPGVPL
AMVDPERMGQALLNLCLNALDAMPEGGRLTFAVTWHKKGVCLMVRDTGVGIVPRQLPH
VFDPYFTTKGQGTGLGLAMVHKIVEAHNGEISVTSRQAQSGAAGETIFRIWLPEAPPA
TPPFVERRKRKRL"
misc_feature 234688..236106
/locus_tag="Ddes_0186"
/note="sensor protein ZraS; Provisional; Region: PRK10364"
/db_xref="CDD:182411"
misc_feature 235435..235593
/locus_tag="Ddes_0186"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature 235435..235437
/locus_tag="Ddes_0186"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature order(235441..235443,235450..235452,235462..235464,
235471..235473,235522..235524,235534..235536,
235543..235545,235555..235557,235564..235566,
235576..235578)
/locus_tag="Ddes_0186"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 235786..236052
/locus_tag="Ddes_0186"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(235852..235854,235858..235860,235864..235866,
235870..235875,235936..235947,235993..235995,
235999..236001,236014..236016,236032..236034,
236038..236040)
/locus_tag="Ddes_0186"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature order(235864..235866,235870..235872,235936..235938,
235942..235944)
/locus_tag="Ddes_0186"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 236171..237544
/locus_tag="Ddes_0187"
/db_xref="GeneID:7283841"
CDS 236171..237544
/locus_tag="Ddes_0187"
/inference="protein motif:PFAM:PF00158"
/note="PFAM: response regulator receiver; sigma-54 factor
interaction domain-containing protein; helix-turn-helix
Fis-type; ATPase associated with various cellular
activities AAA_5;
SMART: AAA ATPase;
KEGG: dvl:Dvul_0017 two component, sigma54 specific, Fis
family transcriptional regulator"
/codon_start=1
/transl_table=11
/product="Fis family two component sigma-54 specific
transcriptional regulator"
/protein_id="YP_002478783.1"
/db_xref="GI:220903471"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:7283841"
/translation="MKNSILVVDDDDAHRGMLRTMLRSWDYVVEEAADGDEAVALVRE
KAFDAVLTDVRMARMNGIHALKGILAYNPALPVILMTAYSSVETAVEALRLGAYDYLV
KPLDFESLKHSLQQGIERSRLSVENRELRRQLSHAAAMPGIIGRSPAIRAMQEIMDTV
APTEATVLITGESGTGKELVARALHGKSLRADKPLVTVNCAALAENLLESELFGHEKG
SFTGAERRREGRFAQAHGGTLFLDEVGEMPLSLQAKLLRALQQGEVQRVGSDTQLTVD
VRVLAATNRDLRHEVAHRRFREDLFFRLNVISVEVPPLRERAEDIPVLAAYFLENFAS
RNRKAVRGFSAQALDIMLRHSWPGNVRELENAVERAVILCTGDLITARELPSVLSETV
AAAEAPAEAPAEADLSLAGLPLDEVERRVIEETLRQTGDNKSEAARRLGITRATLHNK
LRKYELE"
misc_feature 236171..237541
/locus_tag="Ddes_0187"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature 236186..236518
/locus_tag="Ddes_0187"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(236195..236200,236327..236329,236351..236353,
236411..236413,236468..236470,236477..236482)
/locus_tag="Ddes_0187"
/note="active site"
/db_xref="CDD:29071"
misc_feature 236327..236329
/locus_tag="Ddes_0187"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(236336..236341,236345..236353)
/locus_tag="Ddes_0187"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 236477..236485
/locus_tag="Ddes_0187"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 236600..237109
/locus_tag="Ddes_0187"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 236681..236704
/locus_tag="Ddes_0187"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(236684..236707,236894..236896,237020..237022)
/locus_tag="Ddes_0187"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 236882..236899
/locus_tag="Ddes_0187"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 237077..237079
/locus_tag="Ddes_0187"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 237410..237532
/locus_tag="Ddes_0187"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 237768..238373
/locus_tag="Ddes_0188"
/db_xref="GeneID:7283842"
CDS 237768..238373
/locus_tag="Ddes_0188"
/inference="protein motif:PFAM:PF01966"
/note="PFAM: metal-dependent phosphohydrolase HD sub
domain;
SMART: metal-dependent phosphohydrolase HD region;
KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_002478784.1"
/db_xref="GI:220903472"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="GeneID:7283842"
/translation="MPDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAE
HSYRVSVMGYALARMSGVDPAKVTFLCLFHDLHEARTGDLNYVNHRYAQCQPRRALED
CVAGTGLEDDVLPLWDELAENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLES
TVKRLRSPAARELAEVVLRTDHNRWWYGRVEKDWWIRRGRE"
misc_feature 237828..238295
/locus_tag="Ddes_0188"
/note="HD domain; Region: HD_3; pfam13023"
/db_xref="CDD:205204"
gene 238508..239965
/locus_tag="Ddes_0189"
/db_xref="GeneID:7283843"
CDS 238508..239965
/locus_tag="Ddes_0189"
/inference="protein motif:PFAM:PF00563"
/note="PFAM: GGDEF domain containing protein; EAL domain
protein;
KEGG: cpy:Cphy_2835 diguanylate cyclase/phosphodiesterase"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase/phosphodiesterase"
/protein_id="YP_002478785.1"
/db_xref="GI:220903473"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="GeneID:7283843"
/translation="MHFLGDGTEDRAGGYMRLSGDWGVESFFPELDLKSRESCRIRRL
LGCMEQYDRTTWLLQFESFLQEALRVVRSDLTGRRFAVLHADMQGFQVLNRLYGEQAG
NSMLRAFAAFLRHLDCYVCASRIFADQFTMLFTVPEGTSLEVAAGKIVAKGELFLAKK
RNLHPRSHLAFVGGVCPVEGTPASLHPHVSRADQARRALKPTLRSRGGIFTDAMEVRR
LQRQSLYEDVIKSLECGGVFFLLQPQIDIATGAVVGAEALARMRTPDGRDIMPASFVP
LLEESGDIISLDFLVYEQVCRYLRQCLDTGRPFVPVTVNISRENFKNPAFAEEFHALV
CAHGLEPRHVGLEITESVFIKNLTEIRDSVRQFKQYGYSIWLDDFGAGYSSLNVLKEV
PFDVIKIDRSLLGSGEIASVNKSIISSIISLSGDLHMEVLCEGVENATQRNFLLGFGG
IQAQGFFYARPMSCQDFEALMEGGATLNPPQGGVR"
misc_feature 238685..239092
/locus_tag="Ddes_0189"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(238763..238765,238889..238891)
/locus_tag="Ddes_0189"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(238778..238780,238787..238792,238802..238804,
238814..238816,238877..238879,238883..238894)
/locus_tag="Ddes_0189"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(238859..238861,238949..238951)
/locus_tag="Ddes_0189"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 239183..239896
/locus_tag="Ddes_0189"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(240081..240863)
/locus_tag="Ddes_0190"
/db_xref="GeneID:7283844"
CDS complement(240081..240863)
/locus_tag="Ddes_0190"
/inference="protein motif:TFAM:TIGR00761"
/note="TIGRFAM: acetylglutamate kinase;
PFAM: aspartate/glutamate/uridylate kinase;
KEGG: predicted protein; K00930 acetylglutamate kinase"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_002478786.1"
/db_xref="GI:220903474"
/db_xref="InterPro:IPR001048"
/db_xref="InterPro:IPR001057"
/db_xref="InterPro:IPR004662"
/db_xref="GeneID:7283844"
/translation="MNNATVVIKYGGHAMDKPDLCTAFATDLAQLSAQSMGFVVVHGG
GPQISALLQRLSIESRFENGLRVTDQPTMEAVEMVLCGQVNKAVVASLAAHGVRSAGI
SGRDGNLLRAAIKNPALGLVGEVEAVDPALPRCLLEAGFVPVVAPVAGGADGQALNIN
ADTAAGALAGALAADYFVLISDVPGVLDAEGRLIPALTRKEIENLCAEGVITGGMIPK
VESCLHALDSGCRRALILDGRAPSSLRRYLLDDAPLGTVVIG"
misc_feature complement(240090..240848)
/locus_tag="Ddes_0190"
/note="AAK_NAGK-like: N-Acetyl-L-glutamate kinase
(NAGK)-like . Included in this CD are the Escherichia coli
and Pseudomonas aeruginosa type NAGKs which catalyze the
phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in
the second step of arginine...; Region: AAK_NAGK-like;
cd04238"
/db_xref="CDD:58604"
misc_feature complement(order(240210..240212,240228..240230,
240234..240236,240303..240305,240321..240323,
240729..240734,240828..240833,240837..240839))
/locus_tag="Ddes_0190"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58604"
misc_feature complement(order(240381..240383,240387..240392,
240666..240668,240729..240734))
/locus_tag="Ddes_0190"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58604"
gene 241110..243110
/locus_tag="Ddes_0191"
/db_xref="GeneID:7283845"
CDS 241110..243110
/locus_tag="Ddes_0191"
/EC_number="2.7.13.3"
/inference="protein motif:PRIAM:2.7.13.3"
/note="PFAM: response regulator receiver; ATP-binding
region ATPase domain protein; histidine kinase A domain
protein;
KEGG: glo:Glov_1726 multi-sensor hybrid histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_002478787.1"
/db_xref="GI:220903475"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="GeneID:7283845"
/translation="MLEARRIFDEELSWGREAMAAASVGLWAISYDTRTERTAMFTNE
AMRRLLGVPEGLDPEACAAFWLRHVDSRDLPLIRDSLAAFKDDASMREIRYAYCHPGM
GAMHVRCGGRRVSSADDPVLRITGFHQDISELHAAHNALRESLSRLSLACRLGWLGVF
ELGRKNGRPEFSCNEVFYEQFGLRESADAAERLVAVEKCILPEDRHRWRNLCRAEGWT
LGFQEHVELRVSHPWRGLCWFVVAYEVVGTQDEPRITGYVHDVTKQRQHECMLREAKE
SAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDLSPQQRDYVEKIHSTCESLL
DIINDLLDFSKIEANHMDLEALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDIPQ
TLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHREGNSVTLACLVSDEGIGMSE
EEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGGRIHVQSAPGKGSVFRVEL
PFGVGRDDVFAPDMAGAGPEEQPGCLRGLRVLMAEDGDINREIMEVLLSGMGVQCTAV
SNGQEALEAWRAHAGDIDLILMDVQMPVMDGYTATREIRADSRPEAATVPIVAMTAYA
MRGDAERSLQAGMNAHLTKPVDVRELMLTLKRLACPCEGRLG"
misc_feature <241971..242636
/locus_tag="Ddes_0191"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 241971..242144
/locus_tag="Ddes_0191"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(241971..241973,241983..241985,241995..241997,
242004..242006,242016..242018,242025..242027,
242073..242075,242085..242087,242094..242096,
242106..242108,242115..242117,242127..242129)
/locus_tag="Ddes_0191"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 241989..241991
/locus_tag="Ddes_0191"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 242310..242633
/locus_tag="Ddes_0191"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(242328..242330,242340..242342,242349..242351,
242430..242432,242436..242438,242442..242444,
242448..242453,242532..242543,242589..242591,
242595..242597,242610..242615,242619..242621)
/locus_tag="Ddes_0191"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 242340..242342
/locus_tag="Ddes_0191"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(242442..242444,242448..242450,242532..242534,
242538..242540)
/locus_tag="Ddes_0191"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 242724..243074
/locus_tag="Ddes_0191"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 242727..243083
/locus_tag="Ddes_0191"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(242736..242741,242874..242876,242898..242900,
242970..242972,243027..243029,243036..243041)
/locus_tag="Ddes_0191"
/note="active site"
/db_xref="CDD:29071"
misc_feature 242874..242876
/locus_tag="Ddes_0191"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(242883..242888,242892..242900)
/locus_tag="Ddes_0191"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 243036..243044
/locus_tag="Ddes_0191"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 243345..244736
/gene="gltX"
/locus_tag="Ddes_0192"
/db_xref="GeneID:7283846"
CDS 243345..244736
/gene="gltX"
/locus_tag="Ddes_0192"
/inference="protein motif:TFAM:TIGR00464"
/note="Charges one glutamine molecule and pairs it to its
corresponding RNA trinucleotide during protein
translation"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_002478788.1"
/db_xref="GI:220903476"
/db_xref="InterPro:IPR000924"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR004527"
/db_xref="GeneID:7283846"
/translation="MTQVVTRFAPSPTGHLHIGGARTAIFCWLLARHFNGRFHLRIED
TDLLRSKQEYTDSILASMRWLGLDWDGELTYQTQRTDIYNAYVDKLLENGHAYWCSCT
PETVEAMREEARAKGLKPRYNGCCRNRDLGPGEGHCVRLKAPLSGKVVFDDLVKGKIA
VDVGELDDMVIRRADGMPTYNMAVVVDDHDMGITHVIRGDDHVSNTPRQILIYEALGL
SVPRFGHVPMILGPDRQKLSKRHGARAVIEYQQDGLLPQALVNYLVRLGWSHGNQELF
TPEELVEYFDGTNLNPAAAAFDPTKLEWCNAHFMREMPLAELAALTAPFVEQAGLGSL
PQERLEPLCAMFRERANNLKALAESFRPLLVPAAELEYAEKDAAKHLAEAGKAHLTAL
AAVFAACDPFTAENLEAALNAYVADNGLKFKEVAPPLRTALMGFMGGSHLNEIMAFLG
RDETLARLEKAAG"
misc_feature 243345..244730
/gene="gltX"
/locus_tag="Ddes_0192"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:179296"
misc_feature 243354..>243626
/gene="gltX"
/locus_tag="Ddes_0192"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature 243393..243404
/gene="gltX"
/locus_tag="Ddes_0192"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <243855..244280
/gene="gltX"
/locus_tag="Ddes_0192"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(243882..243884,243894..243896,243936..243941,
243945..243950,244023..244028,244050..244055)
/gene="gltX"
/locus_tag="Ddes_0192"
/note="active site"
/db_xref="CDD:173905"
misc_feature 244050..244064
/gene="gltX"
/locus_tag="Ddes_0192"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene complement(244998..245789)
/locus_tag="Ddes_0193"
/db_xref="GeneID:7283847"
CDS complement(244998..245789)
/locus_tag="Ddes_0193"
/inference="protein motif:TFAM:TIGR01400"
/note="TIGRFAM: flagellar biosynthetic protein FliR;
PFAM: type III secretion system inner membrane R protein;
KEGG: lip:LI0532 flagellar biosynthesis pathway, component
FliR"
/codon_start=1
/transl_table=11
/product="flagellar biosynthetic protein FliR"
/protein_id="YP_002478789.1"
/db_xref="GI:220903477"
/db_xref="InterPro:IPR002010"
/db_xref="InterPro:IPR006303"
/db_xref="GeneID:7283847"
/translation="MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAV
TLVFTLGVWPHLALPGSSMPAHPFDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELL
GFQMGFTMINFADPLTGNQTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPG
ALFIGSNILWQILHLAAQMFVLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGF
PAKIGVGFFFVGLLLVIMADHVETFILGLDGLFTNLLRSMSTLYQ"
misc_feature complement(245124..245759)
/locus_tag="Ddes_0193"
/note="flagellar biosynthesis protein FliR; Reviewed;
Region: fliR; PRK05701"
/db_xref="CDD:180211"
gene complement(245911..247482)
/locus_tag="Ddes_0194"
/db_xref="GeneID:7283848"
CDS complement(245911..247482)
/locus_tag="Ddes_0194"
/inference="protein motif:PFAM:PF07690"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: aav:Aave_2158 major facilitator superfamily MFS_1"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily protein"
/protein_id="YP_002478790.1"
/db_xref="GI:220903478"
/db_xref="InterPro:IPR007114"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:7283848"
/translation="MNKDNLNTGNGQPTDTSGKPGPSRAARRRILLAVMVAWLPIATD
MTILHIAVPSLTLALKATGTEILWIIDIYPLIVASLLVPMGTRSDSVGPRKLLLAGLV
IFMAASLAAAFAPTARALIAARACLALGASMIVPSVLAIIRITFDDWKERAMALGIWG
TVSTVSAAMGPLVGGLLLEHFWWGSVFLINVPLILIILPLAAAILPRPRPGPRKPWPI
GQALTLAAGLMSTVYAVKTIFRQDSSLLLCGIALLCGIGLMALFIRKQMTARTPMLDL
DLFRLPAIRVGLVAALVVSGALAGVELTIAQELQFVLGRTPLQAGIFMLPIMAASAVG
GPLAGRLVVMAGLRNVFTVSLLAAGGSLAGLGLASFHDAGWLVAAYMVVLGLSLSIGL
TASSIAIMGSVPPEKGGAAGSIEALGYDLGAGLGITAFGVLLAANYSAALRLPENLRQ
HLPRSALDSISDTMVAAELTGGEKGQAIVEAGQAAFTAAHSTVLLSAALLVCLLALWV
FSSLRRYRGEEQRRG"
misc_feature complement(246025..247395)
/locus_tag="Ddes_0194"
/note="methyl viologen resistance protein SmvA;
Provisional; Region: PRK14995"
/db_xref="CDD:184957"
misc_feature complement(<246910..247392)
/locus_tag="Ddes_0194"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(246982..246984,247000..247005,
247012..247017,247054..247056,247063..247068,
247075..247080,247087..247092,247228..247233,
247237..247242,247252..247254,247261..247266,
247273..247275,247324..247329,247333..247341,
247348..247350))
/locus_tag="Ddes_0194"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(247574..247938)
/locus_tag="Ddes_0195"
/pseudo
/db_xref="GeneID:7283849"
gene 248133..248422
/locus_tag="Ddes_0196"
/pseudo
/db_xref="GeneID:7283850"
gene complement(248585..249625)
/locus_tag="Ddes_0197"
/db_xref="GeneID:7283851"
CDS complement(248585..249625)
/locus_tag="Ddes_0197"
/inference="protein motif:PFAM:PF00072"
/note="PFAM: response regulator receiver; CheW domain
protein;
KEGG: dvl:Dvul_1997 putative CheW protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver modulated CheW
protein"
/protein_id="YP_002478791.1"
/db_xref="GI:220903479"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR002545"
/db_xref="GeneID:7283851"
/translation="MTLRPQPGGASRQHTSPAVRHAQADRMVAMSQNSMLNVNNNELE
IIEFLIDEKQPDGSAYSGHYGINVAKVLEIIRLPNITSVPSKCDPSVLGTFNLRGKVL
PILNLATWLGKEMVTENNAKVIVTEFSGVQAAFLVSAVTSIHRMTWDRIEPPNQYVQN
YSRDSITGVLRIQGRVLFILDMEKILASLDSTLDMSQIKVDTTPVEGAGQFHLLVADD
SNSLRHIIKSSLQKSGFRVTAVASGREAWEYLQTARNEAQAQGKELTDMVHLVISDIE
MPEMDGHMLTAQIRDTPGLSTLPVILFSSLITDALYAKGVKVGADKQVSKPDLPGLSK
IIRELIAEKLNK"
misc_feature complement(249047..249439)
/locus_tag="Ddes_0197"
/note="Chemotaxis signal transduction protein [Cell
motility and secretion / Signal transduction mechanisms];
Region: CheW; COG0835"
/db_xref="CDD:31177"
misc_feature complement(248588..248992)
/locus_tag="Ddes_0197"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(248606..248986)
/locus_tag="Ddes_0197"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(248645..248650,248657..248659,
248714..248716,248780..248782,248804..248806,
248972..248977))
/locus_tag="Ddes_0197"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(248804..248806)
/locus_tag="Ddes_0197"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(248780..248788,248792..248797))
/locus_tag="Ddes_0197"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(248645..248650)
/locus_tag="Ddes_0197"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(249832..250518)
/locus_tag="Ddes_0198"
/db_xref="GeneID:7283852"
CDS complement(249832..250518)
/locus_tag="Ddes_0198"
/EC_number="4.2.99.18"
/inference="protein motif:TFAM:TIGR01083"
/note="KEGG: dvl:Dvul_1999 endonuclease III;
TIGRFAM: endonuclease III;
PFAM: HhH-GPD family protein; Endonuclease III/Nth;
SMART: iron-sulfur cluster loop"
/codon_start=1
/transl_table=11
/product="endonuclease III"
/protein_id="YP_002478792.1"
/db_xref="GI:220903480"
/db_xref="InterPro:IPR003265"
/db_xref="InterPro:IPR003651"
/db_xref="InterPro:IPR004035"
/db_xref="InterPro:IPR004036"
/db_xref="InterPro:IPR005759"
/db_xref="GeneID:7283852"
/translation="MSAKNSRPARAQKVLAALRTRYPAPHTHLDAETAWQLLVATVLA
AQCTDARVNTVTPELFRRWPGPADLMGVPVEELEAVIRSTGFYRSKAKNLLGAAARVC
EVYDGRIPNSLEELITLPGVARKTANVVLFGAFGINEGLAVDTHVKRISYRLGLTEST
DPVVIERDLMALFPREEWGDVNHRMVWFGREVCEARKPLCGQCEMAIFCPRLEPPKTP
RPARRKVPPA"
misc_feature complement(249886..250500)
/locus_tag="Ddes_0198"
/note="Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair]; Region: Nth;
COG0177"
/db_xref="CDD:30526"
misc_feature complement(249952..250416)
/locus_tag="Ddes_0198"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(order(250249..250251,250366..250368,
250375..250383))
/locus_tag="Ddes_0198"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(250141..250164)
/locus_tag="Ddes_0198"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(249961..249963,249973..249975,
250132..250134))
/locus_tag="Ddes_0198"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(250087..250089)
/locus_tag="Ddes_0198"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(249886..249945)
/locus_tag="Ddes_0198"
/note="Iron-sulfur binding domain of endonuclease III;
Region: EndIII_4Fe-2S; cl15304"
/db_xref="CDD:210074"
gene 250642..250965
/locus_tag="Ddes_0199"
/db_xref="GeneID:7283853"
CDS 250642..250965
/locus_tag="Ddes_0199"
/inference="protein motif:PFAM:PF03091"
/note="PFAM: CutA1 divalent ion tolerance protein;
KEGG: afw:Anae109_1180 CutA1 divalent ion tolerance
protein"
/codon_start=1
/transl_table=11
/product="CutA1 divalent ion tolerance protein"
/protein_id="YP_002478793.1"
/db_xref="GI:220903481"
/db_xref="InterPro:IPR004323"
/db_xref="GeneID:7283853"
/translation="MSYLVYVTAPDEELALDLARMLVEQSLAAGVNIVPGARSIYRWR
GQVHDAAECLLMAQVSHEALPAFEAAVKSMHSYEVPCIVALPIEAGHEPYLRWIRENS
RPPSA"
misc_feature 250645..250950
/locus_tag="Ddes_0199"
/note="CutA1 divalent ion tolerance protein; Region:
CutA1; pfam03091"
/db_xref="CDD:202531"
gene 251096..252052
/locus_tag="Ddes_0200"
/db_xref="GeneID:7283854"
CDS 251096..252052
/locus_tag="Ddes_0200"
/inference="protein motif:PFAM:PF00294"
/note="PFAM: PfkB domain protein;
KEGG: dvl:Dvul_2001 ribokinase-like domain-containing
protein"
/codon_start=1
/transl_table=11
/product="PfkB domain-containing protein"
/protein_id="YP_002478794.1"
/db_xref="GI:220903482"
/db_xref="InterPro:IPR002173"
/db_xref="InterPro:IPR011611"
/db_xref="GeneID:7283854"
/translation="MSIYVSGSLAFDRIMTFPGNFQDHILMDKLHMINVSFMVDGMDE
RRGGCAGNIAYSLALLEEKPVIVGAAGRDFDSYAQTLAAHGLPLDGIRRADEVFTALC
YITTDLNSNQITGFYPGAMTLPSLYDFPALDPAKDIAIVSPGNLDDMRRLPRFYREKG
VPYIFDPGQQLPVLTAEELLDAIEGSLACITNDYELNMICKATGRSEDEIAAGTRWLV
TTLGAEGAQVHGNRGENVRIAPVPVEKVLDPTGAGDAHRAGLIKGLVSGLAMPEAARL
GSVSASFALEKLGTQEHAITPALFRQRYEAVFGPLPQGIFAA"
misc_feature 251099..252019
/locus_tag="Ddes_0200"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 251099..251968
/locus_tag="Ddes_0200"
/note="Ribokinase-like subgroup A. Found in bacteria and
archaea, this subgroup is part of the ribokinase/pfkB
superfamily. Its oligomerization state is unknown at this
time; Region: ribokinase_group_A; cd01942"
/db_xref="CDD:29364"
misc_feature order(251249..251251,251846..251848,251855..251857)
/locus_tag="Ddes_0200"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29364"
misc_feature order(251669..251671,251753..251755,251840..251842,
251849..251854,251861..251863,251927..251929,
251936..251938)
/locus_tag="Ddes_0200"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29364"
gene 252186..252638
/locus_tag="Ddes_0201"
/db_xref="GeneID:7283855"
CDS 252186..252638
/locus_tag="Ddes_0201"
/inference="protein motif:PFAM:PF00903"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: spe:Spro_2338 hypothetical protein"
/codon_start=1
/transl_table=11
/product="Glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_002478795.1"
/db_xref="GI:220903483"
/db_xref="InterPro:IPR004360"
/db_xref="GeneID:7283855"
/translation="MTHNLPEGIKVLFVSGFGPVVRRQEASERLYRDTLGLPLEPTEG
YEGYWHTQAVDGVKHFALWPLDNAALSCFGSAQWPDDIPVPQAWLEMDVEDIESATRL
LEESGCTLLTRLRQEPWGQTVTRFLSPEGLLVAIAHTPFLREAGQGCS"
misc_feature 252243..252593
/locus_tag="Ddes_0201"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature 252258..252587
/locus_tag="Ddes_0201"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cd06587"
/db_xref="CDD:211348"
misc_feature order(252330..252332,252366..252368,252372..252374,
252447..252449,252558..252560,252582..252584)
/locus_tag="Ddes_0201"
/note="active site"
/db_xref="CDD:211348"
gene 252951..253379
/locus_tag="Ddes_0202"
/db_xref="GeneID:7283856"
CDS 252951..253379
/locus_tag="Ddes_0202"
/inference="protein motif:PFAM:PF04657"
/note="PFAM: protein of unknown function DUF606;
KEGG: gme:Gmet_2636 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478796.1"
/db_xref="GI:220903484"
/db_xref="InterPro:IPR006750"
/db_xref="GeneID:7283856"
/translation="MLYIALMVFGGCLVALQSPVNAALSRTVGILESSFVSFAGGTLF
LGLAVLFFGRGQLMRLPEAPSWQWIGGVFGAIMVLNTIIAVPRIGVLTTAMAMIFGNL
LMAAIIDNYGWFGLPVTPFGWRRLLGFVLVLAGLALVFRR"
sig_peptide 252951..253019
/locus_tag="Ddes_0202"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.995 at
residue 23"
misc_feature 252954..253319
/locus_tag="Ddes_0202"
/note="Protein of unknown function, DUF606; Region:
DUF606; pfam04657"
/db_xref="CDD:191054"
gene 253494..253967
/locus_tag="Ddes_0203"
/db_xref="GeneID:7283857"
CDS 253494..253967
/locus_tag="Ddes_0203"
/inference="protein motif:PFAM:PF04073"
/note="PFAM: YbaK/prolyl-tRNA synthetase associated
region;
KEGG: dvl:Dvul_0019 YbaK/prolyl-tRNA synthetase associated
region"
/codon_start=1
/transl_table=11
/product="YbaK/prolyl-tRNA synthetase associated
domain-containing protein"
/protein_id="YP_002478797.1"
/db_xref="GI:220903485"
/db_xref="InterPro:IPR007214"
/db_xref="GeneID:7283857"
/translation="MRIDAVKAVLASHGLAEGYMEFEVSSATVDLAAAAVGCEPGRIA
KSLSVMGPEGPVVLVVMGTARLDNRKFKDTFRCKPRFIKPEDLQEQVGHPMGGVCPFA
LHDNVRVYLDASLKHFDPVYPAAGAPNNAVKISLAELERVTGGTWVDVCKEEERA"
misc_feature 253500..253943
/locus_tag="Ddes_0203"
/note="This CD, composed mainly of bacterial single-domain
proteins, includes the Thermus thermophilus (Tt) YbaK-like
protein, a homolog of the trans-acting Escherichia coli
YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium
tumefaciens ProX Ala-tRNA(Pro)...; Region:
ProX_deacylase; cd04333"
/db_xref="CDD:88584"
misc_feature order(253626..253628,253779..253784,253863..253865)
/locus_tag="Ddes_0203"
/note="putative deacylase active site [active]"
/db_xref="CDD:88584"
gene complement(254051..254338)
/locus_tag="Ddes_0204"
/db_xref="GeneID:7283858"
CDS complement(254051..254338)
/locus_tag="Ddes_0204"
/inference="protein motif:PFAM:PF02001"
/note="PFAM: protein of unknown function DUF134;
KEGG: dsy:DSY3441 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478798.1"
/db_xref="GI:220903486"
/db_xref="InterPro:IPR002852"
/db_xref="GeneID:7283858"
/translation="MHGPRGTAEDAVIMTVDQYETLRLIDLESMTQEACAENMHIART
TVQSIYAEARKKLADALVNGKMLHIEGGEYRLCNGDGAQCGGGGCRRGRNR"
misc_feature complement(254114..>254335)
/locus_tag="Ddes_0204"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
gene complement(254740..255009)
/locus_tag="Ddes_0205"
/db_xref="GeneID:7283859"
CDS complement(254740..255009)
/locus_tag="Ddes_0205"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dol:Dole_0573 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478799.1"
/db_xref="GI:220903487"
/db_xref="GeneID:7283859"
/translation="MPCNDTTGPEGAGPRTGRGMCGGNAVERNMKQGGGMGRGMRHGA
CRGQNMPGMDVAQEYGRGQGRGMCRGRGMRRMNTPACAADDATEN"
gene complement(255653..256000)
/locus_tag="Ddes_0206"
/db_xref="GeneID:7283860"
CDS complement(255653..256000)
/locus_tag="Ddes_0206"
/inference="protein motif:PFAM:PF07883"
/note="PFAM: Cupin 2 conserved barrel domain protein;
KEGG: trq:TRQ2_1532 cupin 2 domain-containing protein"
/codon_start=1
/transl_table=11
/product="cupin"
/protein_id="YP_002478800.1"
/db_xref="GI:220903488"
/db_xref="InterPro:IPR013096"
/db_xref="GeneID:7283860"
/translation="MIYRADALEGFEKEMFGGPGTTKFTKIVNEEGLAGKGRLFNLVN
LKPGCAIGSHKHSGELEIYHVLKGQGTYNDNGTEVLVKAGDVTVCNDGEVHGILNTGT
EDLEMVALILFTR"
misc_feature complement(255668..255880)
/locus_tag="Ddes_0206"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
gene complement(256098..259043)
/locus_tag="Ddes_0207"
/db_xref="GeneID:7283861"
CDS complement(256098..259043)
/locus_tag="Ddes_0207"
/inference="protein motif:PFAM:PF00924"
/note="PFAM: MscS Mechanosensitive ion channel;
KEGG: dvu:DVU1544 mechanosensitive ion channel family
protein"
/codon_start=1
/transl_table=11
/product="mechanosensitive ion channel MscS"
/protein_id="YP_002478801.1"
/db_xref="GI:220903489"
/db_xref="InterPro:IPR006685"
/db_xref="GeneID:7283861"
/translation="MRYFLRFSSLFLLILCCVLAAGHTPAADTDTATPENPAAASRDA
VKPSDAAPGAASAVLPAGSADSATTGNPAPAAGQAPQGTPSAQETSPAAAPLPVQPQA
APAAPAANGDESAAPAPRPGTSEKKEPAKAKAEKKASPKPKTEKKENAAPKADKKEAR
PAAADKKDAPAAQEEENATAQEEEKSGVLHDPWEMVWSSQHSMLEEVNGKALAMSDTF
ADRALNVSEKVQPFVDEARRLLVLSNTYKNMPNAMEAVSRRLTVTITEVRKILSPMMD
ARSEAQGLLERISYLADSLPEDLHDERLSSEMQEYIQALAMTRLRLTAVLAQYDTALA
PSLALLNRLEKTREEISSQLPALWKDYYLQKPVPWLSPAAWADFPKQMTYSYQGLLLR
IPVEVPVTPENWGTAVLRFFMCLLFAGVITVLLSRRWLNETSTPTVRHIFHVSLPWFC
VGLALLGSSISATGEFFRLFLALGNLSLIVAQINLAWDLRRLKYPEVQIDRSPFWHLI
PLTLCAYVLLYLPLLRPLVLVIWMGLLITDIMRQRRRKEQDLGPLHLESSVLEAEPVV
LWLCLIMTIFGLHLYSMVLYLCFVSCSLALQLSLGGMSFVTTVSEKLPKEGIRAALAH
TAIALAAPVVLVVAFVGVTQWVGTLPGGLPLLQYYILRGVNVGATQFNVLHLLMIVSA
FYITRTAVAMGSRFLGRLPKQGLQIDATLIPPIQTAFSYALWCFFGLFVLKALGMELS
NLAMVAGGLSVGIGFGMQTIVNNFLSGLILIFSRTLQAGDVVEVGGTQGRVRKISVRA
TMVETFDNALIIVPNSEFVASRLINWTRNSRTVRKEIKVGVAYGSDTAAVMRILLATA
NANSNVLKYPPPNVIFADFGASTLDFNLLFWVRDYDVGASTTSAIRLEIEKEFRNQRI
EVAFPQLDIHIKEMPPRVKNTPPPSELRAARRLTRRPRRRLEAASSRKVAENTAGTPH
PDNTDDNDA"
sig_peptide complement(258960..259043)
/locus_tag="Ddes_0207"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.728 at
residue 28"
misc_feature complement(256296..256889)
/locus_tag="Ddes_0207"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 259223..260269
/locus_tag="Ddes_0208"
/db_xref="GeneID:7283862"
CDS 259223..260269
/locus_tag="Ddes_0208"
/inference="protein motif:PFAM:PF04015"
/note="PFAM: protein of unknown function DUF362;
KEGG: dvu:DVU3036 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478802.1"
/db_xref="GI:220903490"
/db_xref="InterPro:IPR007160"
/db_xref="GeneID:7283862"
/translation="MPGLDKADARRHIRLMENQSFSAGAMPVALDRCEGYDRQSLDRL
TGDVLDAARIAQFHSLKPGTRVLVKPNLLMGKPLACTSPGVVAAACRWLRDHGAQMAV
ADSPGFGRAVAVARAIGLESSLRPLGLAVRELDRPVPVRLDTDLPAGLQGGRGGRKRP
SFQVSSAVQECDFILSLPRVKAHGQMLLTLAVKNCFGCVSGLHKAVAHAREGRDPVYF
ADCLAALWAALPPVAALADGGVAMHRTGPSKGEAFVLKLMGASPSAVALDEALYAVFG
LGPQDVPLGAALARRKAPGSAAAGTEMAFPLLRPEDFDARGFELPQRLSHTSFHPARF
VQSCLRRAIAAIKK"
misc_feature 259298..260104
/locus_tag="Ddes_0208"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2006"
/db_xref="CDD:32189"
misc_feature 259415..260047
/locus_tag="Ddes_0208"
/note="Domain of unknown function (DUF362); Region:
DUF362; pfam04015"
/db_xref="CDD:190830"
gene 260281..260916
/locus_tag="Ddes_0209"
/db_xref="GeneID:7283863"
CDS 260281..260916
/locus_tag="Ddes_0209"
/EC_number="2.5.1.3"
/inference="protein motif:TFAM:TIGR00693"
/note="KEGG: dvl:Dvul_1139 thiamine-phosphate
pyrophosphorylase;
TIGRFAM: thiamine-phosphate pyrophosphorylase;
PFAM: thiamine monophosphate synthase"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="YP_002478803.1"
/db_xref="GI:220903491"
/db_xref="InterPro:IPR003733"
/db_xref="GeneID:7283863"
/translation="MPRILPGETDIYAITDSRLSLGRSLEEVASALLGAGVRLLQYRE
KNFKGGEMLEECRLLRRLTREAGACFIVNDHVDIAMLVDADGVHVGQEDLPVPEVRRL
VGPDMIIGLSTHEPDQALAARALGADYLGVGPIFATQTKEDVVAPVGFGYLDWVAANI
DMPFVAIGGIKAHNIAEVARHGARCCSLVSELVGAPDIAARVDAVRRAMRG"
misc_feature 260311..260874
/locus_tag="Ddes_0209"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature order(260314..260316,260320..260322,260401..260403,
260407..260409,260542..260544,260614..260616,
260665..260667,260671..260673,260692..260694,
260698..260700,260773..260775,260785..260787,
260839..260850)
/locus_tag="Ddes_0209"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature order(260401..260403,260407..260409,260413..260415,
260497..260502,260557..260559,260614..260616,
260692..260694,260698..260703,260785..260787,
260845..260850)
/locus_tag="Ddes_0209"
/note="active site"
/db_xref="CDD:73367"
misc_feature order(260407..260409,260413..260415,260497..260502,
260548..260550,260557..260559,260614..260616,
260701..260703)
/locus_tag="Ddes_0209"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene complement(261062..261979)
/locus_tag="Ddes_0210"
/db_xref="GeneID:7283864"
CDS complement(261062..261979)
/locus_tag="Ddes_0210"
/inference="protein motif:PFAM:PF03466"
/note="PFAM: regulatory protein LysR; LysR
substrate-binding;
KEGG: bcj:BCAL1417 LysR family regulatory protein"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002478804.1"
/db_xref="GI:220903492"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:7283864"
/translation="MEMTDLRTLVSVMETGSITAAAKALNRVPSGVTMRILQLEENLG
VQLFLREKKRLYPTDKAQSLYQYALRILALAEEAENRVRGMAPGGKFRIGALESAAAA
RLPEVLARLHAGYPQIALELVVGTSRSLYKDVLENRLDAVFVVDMPEDDRLERMNAFA
EELVVIAPEGHSPIRYPDDIGRKTLLAFQGGCAYQNRLVNWFRAHGREPERIAELASY
HAIVGGVIAGMGVGAVPDSVLHLCRSDGILSVHRLGHPLCHATTELIWRKGMLSANMT
ALRQCLHSTPEVLGRSIAPEKNTDIPLQK"
misc_feature complement(261134..261979)
/locus_tag="Ddes_0210"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(261794..261973)
/locus_tag="Ddes_0210"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(261134..261709)
/locus_tag="Ddes_0210"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature complement(order(261299..261304,261308..261313,
261329..261346,261608..261628,261632..261634,
261644..261646,261653..261658,261662..261667))
/locus_tag="Ddes_0210"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 262112..262501
/locus_tag="Ddes_0211"
/db_xref="GeneID:7283865"
CDS 262112..262501
/locus_tag="Ddes_0211"
/inference="protein motif:PFAM:PF03788"
/note="PFAM: LrgA family protein;
KEGG: dsy:DSY3772 hypothetical protein"
/codon_start=1
/transl_table=11
/product="LrgA family protein"
/protein_id="YP_002478805.1"
/db_xref="GI:220903493"
/db_xref="InterPro:IPR005538"
/db_xref="GeneID:7283865"
/translation="MKETWKFLWQMAFLMALFLASNWLVGVTGLPMPGNVLGIIVLFL
LLLTGVVKEDHISTAANFLLKHMVFFFVPVAVGLMQWGGVFYDYGWILLAAIVVGAIL
PLLTVGLLGRALRRRTRRKEEESCSPM"
sig_peptide 262112..262192
/locus_tag="Ddes_0211"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.657) with cleavage site probability 0.254 at
residue 27"
misc_feature 262160..262414
/locus_tag="Ddes_0211"
/note="LrgA family; Region: LrgA; pfam03788"
/db_xref="CDD:202768"
gene 262486..263199
/locus_tag="Ddes_0212"
/db_xref="GeneID:7283866"
CDS 262486..263199
/locus_tag="Ddes_0212"
/inference="protein motif:PFAM:PF04172"
/note="PFAM: LrgB family protein;
KEGG: gbm:Gbem_2907 LrgB family protein"
/codon_start=1
/transl_table=11
/product="LrgB family protein"
/protein_id="YP_002478806.1"
/db_xref="GI:220903494"
/db_xref="InterPro:IPR007300"
/db_xref="GeneID:7283866"
/translation="MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAI
IITVLVVCDLPYAVYEPAAKIMTVFIGPATVALALPLYRYRQVLLRYVLAITGSVCAG
AFVAMFSAGLIARLGGLPQEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGT
LGSLIGGWTLNLAGVADPFARGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGII
TAAIAPVVVWLVLCFPGIA"
misc_feature 262531..263055
/locus_tag="Ddes_0212"
/note="LrgB-like family; Region: LrgB; pfam04172"
/db_xref="CDD:146683"
gene complement(263654..264489)
/locus_tag="Ddes_0213"
/pseudo
/db_xref="GeneID:7283867"
gene 264835..266007
/locus_tag="Ddes_0214"
/db_xref="GeneID:7283868"
CDS 264835..266007
/locus_tag="Ddes_0214"
/EC_number="1.6.1.2"
/inference="protein motif:PRIAM:1.6.1.2"
/note="PFAM: alanine dehydrogenase/PNT domain protein;
KEGG: pgn:PGN_1120 putative NADPH-NAD transhydrogenase"
/codon_start=1
/transl_table=11
/product="NAD(P)(+) transhydrogenase"
/protein_id="YP_002478807.1"
/db_xref="GI:220903495"
/db_xref="InterPro:IPR007698"
/db_xref="InterPro:IPR007886"
/db_xref="InterPro:IPR013027"
/db_xref="GeneID:7283868"
/translation="MKFQGMTIGVPKEIMHGERRVSATPDTVKKMVADGATVLVEKGA
GDGAFFADSAYVEAGGKIIEDVQEIFAKADVILKVKEPLFNDKVNKHEAEMVRDGQYL
ITFLHPAAPVNHEMMKKLAATGVISITLDGIPRISRAQGMDALTSMSTVAGYKGVLMA
ANRLAKFMPMVGTAVGVIKPANVLVIGTGVAGLQAVATAKRLGAVVTAVDIRPDAREQ
SMSLGAKPFDVGVPAEVAIGEGGYAQRLSDEWLNKEREALKPLVKDADIIILSALIPG
KLAPILITKEMVASMAPGSSIVDISIDQGGNCELTEAGEVVVKHGVTIDGTKNIPGMM
PTSSTWMFANNVYQLLAFLAQDGKIVLDRTDPIIESTLSTIDKQIVHRGAREAMGL"
misc_feature 264853..265968
/locus_tag="Ddes_0214"
/note="NAD/NADP transhydrogenase alpha subunit [Energy
production and conversion]; Region: PntA; COG3288"
/db_xref="CDD:33098"
misc_feature 264859..265290
/locus_tag="Ddes_0214"
/note="Alanine dehydrogenase/PNT, N-terminal domain;
Region: AlaDh_PNT_N; pfam05222"
/db_xref="CDD:203211"
misc_feature 265315..265806
/locus_tag="Ddes_0214"
/note="Alanine dehydrogenase/PNT, C-terminal domain;
Region: AlaDh_PNT_C; smart01002"
/db_xref="CDD:198070"
gene 266092..266373
/locus_tag="Ddes_0215"
/db_xref="GeneID:7283869"
CDS 266092..266373
/locus_tag="Ddes_0215"
/inference="similar to AA sequence:KEGG:PGN_1121"
/note="KEGG: pgn:PGN_1121 probable NADPH-NAD
transhydrogenase alpha subunit"
/codon_start=1
/transl_table=11
/product="putative NADPH-NAD transhydrogenase alpha
subunit"
/protein_id="YP_002478808.1"
/db_xref="GI:220903496"
/db_xref="GeneID:7283869"
/translation="MTPFTLLAVFVVATLLGYKIISHVPSLLHTPLMSAMNALSGVII
LGAVTATYLAGSTFFTLLGAVAVAMAIVNVFGGFDITHKMLRMVAGKKK"
misc_feature 266140..266352
/locus_tag="Ddes_0215"
/note="Domain of unknown function (DUF3814); Region:
DUF3814; pfam12769"
/db_xref="CDD:205065"
gene 266427..268928
/locus_tag="Ddes_0216"
/db_xref="GeneID:7283870"
CDS 266427..268928
/locus_tag="Ddes_0216"
/EC_number="1.6.1.2"
/inference="protein motif:PRIAM:1.6.1.2"
/note="PFAM: NAD(P) transhydrogenase beta subunit;
KEGG: pgn:PGN_1122 NADPH-NAD transhydrogenase beta
subunit"
/codon_start=1
/transl_table=11
/product="NAD(P)(+) transhydrogenase"
/protein_id="YP_002478809.1"
/db_xref="GI:220903497"
/db_xref="InterPro:IPR004003"
/db_xref="GeneID:7283870"
/translation="MNAITYNIIAGILVAAVLFGLRLMNKVPTAVRGNLFCASAMGLA
ILVTMFKDGSLASPALWLAIAVGMTLGLTLSNKVKMIQMPQMVAFLHGIGGGAAAIVS
FLVLTDTGAPSAFERGSACLALAMGMTTIAGSFVAAGKLHQILPQKPVILPDHTKIIM
AILAVMGFSVLMGTAFPQFLFGFFIFLMFVTGTAFGIGFTLRVGGADMPITISLLNSM
GGVCAAIAGFAVNDPLLVAIGGIIGSSGYLLTRIMCRAMNRKLLSILLGESSVVTPSA
PAKKAAPAARAAAPARSVESEAAKLVQNARNVVIVPGYGMALAQAQYKVKQLADLLES
RGAKVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDTVNPMFAESDLVIVVGANDV
VNPAANTAEGTPIYGMPILKADEAKNIIIANYDDKPGYAGVPNPLYGRDGVILMTGDA
GKTFDRLLAYAQGNGPADEAAPAAGADSREAEAAKLVQNARNVVIVPGYGMALAQAQH
KVKLLADALESRGVKVSYGIHPVAGRMPGHMNVLLAEANVDYENLLEMDTVNPMFAES
DLVVIIGANDVVNPAANTAEGTPIYGMPILKADECRNIIVCNYDDKPGYAGVPNPLYE
RDGVILMTGDAAKTVDRLVSFAQGESPAAPAAGTDSREADAAKLVQNARNVVIVPGYG
MALAQAQYKVKQLADLLESRGARVSYGIHPVAGRMPGHMNVLLAEANVDYEHLLEMDT
VNPMFAESDLVIVVGANDVVNPAANSAEGTPIYGMPILKADEAKNIIIANYDDKPGYA
GVPNPLYEREGVILMTGDAGKTFDRLLAYAQGGQA"
misc_feature 266448..267800
/locus_tag="Ddes_0216"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; COG1282"
/db_xref="CDD:31473"
misc_feature 266463..267803
/locus_tag="Ddes_0216"
/note="NAD(P) transhydrogenase beta subunit; Region: PNTB;
pfam02233"
/db_xref="CDD:145408"
misc_feature <267882..268361
/locus_tag="Ddes_0216"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
misc_feature <268413..268901
/locus_tag="Ddes_0216"
/note="NAD/NADP transhydrogenase beta subunit [Energy
production and conversion]; Region: PntB; cl00566"
/db_xref="CDD:199328"
gene 268934..269539
/locus_tag="Ddes_0217"
/db_xref="GeneID:7283871"
CDS 268934..269539
/locus_tag="Ddes_0217"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478810.1"
/db_xref="GI:220903498"
/db_xref="GeneID:7283871"
/translation="MYLPSGIKQNALRGLRKNACLWMSLRPTPLWPRHAAETQPAIAF
FMRSSSGRSFLTGRGCPVLHFFHFPTRHMTLSFMTRTEMQVSFALPGGGSVKIFFNSA
LLPAWHAYCLLLRQQAGQGLQCARSDQASGSRQQGGCGVCLPTELRSFFVVRPALAGC
AECFVELWDFDFRAVYGRSPTFLRSELPCQQRTQMNMSTGI"
gene 269497..270855
/locus_tag="Ddes_0218"
/db_xref="GeneID:7283872"
CDS 269497..270855
/locus_tag="Ddes_0218"
/inference="protein motif:PFAM:PF00202"
/note="PFAM: aminotransferase class-III;
KEGG: pin:Ping_0051
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase"
/codon_start=1
/transl_table=11
/product="class III aminotransferase"
/protein_id="YP_002478811.1"
/db_xref="GI:220903499"
/db_xref="InterPro:IPR005814"
/db_xref="GeneID:7283872"
/translation="MSAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLN
GKEYLDATSGGVWCVNVGYGRDRIANAAAEQMKKLPFYAASCGSQPAIDFSEKLLSHM
PGLSRVYISSSGSEANEKAFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQ
EERREQYGPFTPGFVEFPACLAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVI
LEPITAGGGIIVPPEGYYETISEICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPD
IVTMAKGVASAYMPISCTVTTEEVFAALQDTTDKLSYFRDISTFGGCLAAPAAALENI
KIIEEESLLDNVVAMGDYLQQGLQELLSHSNVGDVRGKGLLQGIEFVADKASKKPLEE
EKVIAVCGAMAKRGVLVGRTNRSFVGRNNIVNVAPAYIVTKDQIDIILKALRESITEV
LG"
misc_feature 269497..270846
/locus_tag="Ddes_0218"
/note="aminotransferase; Validated; Region: PRK07678"
/db_xref="CDD:181078"
misc_feature 269539..270837
/locus_tag="Ddes_0218"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(269833..269841,269935..269940,269944..269946,
270154..270156,270253..270255,270259..270264,
270340..270342)
/locus_tag="Ddes_0218"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(269836..269841,269935..269940,270154..270156,
270253..270255,270262..270264,270340..270342)
/locus_tag="Ddes_0218"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 270340..270342
/locus_tag="Ddes_0218"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(271014..272831)
/locus_tag="Ddes_0219"
/db_xref="GeneID:7283873"
CDS complement(271014..272831)
/locus_tag="Ddes_0219"
/inference="protein motif:TFAM:TIGR00229"
/note="KEGG: dps:DP0355 transcriptional regulator;
TIGRFAM: PAS sensor protein;
PFAM: sigma-54 factor interaction domain-containing
protein; helix-turn-helix Fis-type; PAS fold-4 domain
protein; PAS fold domain protein;
SMART: PAS domain containing protein; AAA ATPase"
/codon_start=1
/transl_table=11
/product="Fis family PAS modulated sigma54 specific
transcriptional regulator"
/protein_id="YP_002478812.1"
/db_xref="GI:220903500"
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
/db_xref="GeneID:7283873"
/translation="MNKRIYDIIYLLNLIPSSSCALVCSDEQWNIEACSHSFHLLTQK
INNSLSGNKEIDPSTQDNNHSFLRTLELYCSHELSKKVQASKPDVPTDISLPCGKWTL
CWKWLNSEDSRPGKNRRRFVLLHENHAADNQPDVHLLYQELHAIMDSMYDGMWIIDSN
GTTLHVNKAMKRIANIEPEEMIGKSVTIPVLEGKFSAAVTLEALEQRKIVTRFDDYPN
GIRCLNTSTPIFDKQGNIWRVVACIRDLTELETLQRRLADAERTAFLRQAEAAAVQHS
NEKKLVATGKVMRRCVSELEKAARAPSGILILGETGTGKTYAASYIHQKSPRADGPFI
SVNCAAIPPTLIESELFGYEKGAFTGASRSGKKGYFGLADKGTLLLDEIGELPLSMQA
KILHVLDGQGFRKIGGEKELRVDVRIIAATNRPLDQLVNSGLFRADLYYRLRVLSINM
PPLREHPEDIPALMMVFLDKACTRYNTIKTFSPSVIDCFSKHSWPGNVRELRAAVDFL
AAMTESSVISMRDLPAYLLGDLPGICEDEEDESLPGQADSNLSFREAVENLERSLISE
ALAATGSTYKAAARLGISQSTVVRKAKQLRIPVTEKKRN"
misc_feature complement(272073..272756)
/locus_tag="Ddes_0219"
/note="FOG: PAS/PAC domain [Signal transduction
mechanisms]; Region: AtoS; COG2202"
/db_xref="CDD:32384"
misc_feature complement(272094..272384)
/locus_tag="Ddes_0219"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(272178..272180,272193..272195,
272265..272270,272304..272306,272322..272324,
272334..272336))
/locus_tag="Ddes_0219"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(272157..272159,272235..272240,
272247..272249,272274..272276))
/locus_tag="Ddes_0219"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(271053..272258)
/locus_tag="Ddes_0219"
/note="Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms]; Region: PspF; COG1221"
/db_xref="CDD:31414"
misc_feature complement(271476..271976)
/locus_tag="Ddes_0219"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(271884..271907)
/locus_tag="Ddes_0219"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(271563..271565,271689..271691,
271881..271904))
/locus_tag="Ddes_0219"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(271686..271703)
/locus_tag="Ddes_0219"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(271506..271508)
/locus_tag="Ddes_0219"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(271047..271166)
/locus_tag="Ddes_0219"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 273168..274910
/locus_tag="Ddes_0220"
/db_xref="GeneID:7283874"
CDS 273168..274910
/locus_tag="Ddes_0220"
/inference="protein motif:TFAM:TIGR03457"
/note="catalyzes the formation of acetyl phosphate and
sulfite from 2-sulfoacetaldehyde; is active when grown on
taurine as a sole carbon source"
/codon_start=1
/transl_table=11
/product="sulfoacetaldehyde acetyltransferase"
/protein_id="YP_002478813.1"
/db_xref="GI:220903501"
/db_xref="InterPro:IPR000399"
/db_xref="InterPro:IPR011766"
/db_xref="InterPro:IPR012000"
/db_xref="InterPro:IPR012001"
/db_xref="InterPro:IPR017820"
/db_xref="GeneID:7283874"
/translation="MPKMTPSEAMTEVLVQEGVNHVSGILGSAFMDMLDLFPAAGIDF
VSVRHEQTAGHMEDAYSRLTGRAGVVIGQNGPGITNYVTAVATANMAHSPMVVISPSA
GSISVGWDGFQECDTWNLFKPITKASLRVPHPKRAADILRTAFRIAYAERGPVLVDIP
RDYFYGELDEDILHPSQYRVAPGGIGNPEHFAAAVEVLKNAKNPVIISGRGVVDSGCM
ETLKAMAEYLGAPVATTYLHNDAFPCDHPLWTGPIGYMGSKAAMRILQKADVILAVGT
RLSYFGTLPQYDINYFPKTAKIVQIDINPRHIAKTHPVAVGLCADAKDASEELFARLR
EAVPAKKDLTPVHNLVKDELENWYKEIALIADEPVEAGRMHPRKALEVVGKFITDHDA
IATTDIGNTSSTANSYLRFKKTKRHVATLTFGNTGFAYQAALGAQLACPEDLTVAIVG
DGAWGMSLFEVPTACQYNLPVIATVYNNGAWCAEKKNQVDFYNNRFVGADIWSKSYAK
IGEAMGADGYTVNTQKDLAEALDTARKNRRPAVIEIMTDGTRLAPPFRRDALALPTRF
LPKYEHLDKAHFNK"
misc_feature 273168..274889
/locus_tag="Ddes_0220"
/note="sulfoacetaldehyde acetyltransferase; Validated;
Region: PRK07525"
/db_xref="CDD:181016"
misc_feature 273189..273650
/locus_tag="Ddes_0220"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(273228..273230,273243..273248,273258..273260,
273270..273272,273294..273314,273321..273323,
273330..273335,273342..273347,273351..273359,
273393..273395,273414..273416,273426..273428,
273435..273440)
/locus_tag="Ddes_0220"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(273243..273251,273258..273260,273270..273272,
273297..273299,273303..273314,273318..273320,
273393..273395,273402..273407,273411..273416,
273423..273425,273525..273527,273534..273536)
/locus_tag="Ddes_0220"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(273243..273245,273315..273317,273393..273395,
273405..273407)
/locus_tag="Ddes_0220"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 273741..274154
/locus_tag="Ddes_0220"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 274284..274862
/locus_tag="Ddes_0220"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:207466"
misc_feature order(274443..274445,274515..274526,274599..274601,
274605..274607)
/locus_tag="Ddes_0220"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene 275079..276551
/locus_tag="Ddes_0221"
/db_xref="GeneID:7283875"
CDS 275079..276551
/locus_tag="Ddes_0221"
/inference="protein motif:PFAM:PF00324"
/note="PFAM: amino acid permease-associated region;
KEGG: dps:DP0547 amino acid transporter"
/codon_start=1
/transl_table=11
/product="amino acid permease-associated protein"
/protein_id="YP_002478814.1"
/db_xref="GI:220903502"
/db_xref="InterPro:IPR004841"
/db_xref="GeneID:7283875"
/translation="MSQVHESRPVLEKNMSPLSIWALAFGAIIGWGAFIMPGLRFLPG
SGPIGACIGFVCGGLLLMFIAVSYGKVVGLYPVAGGVFAFAYAAFGPGLAFVGGWALL
LGYLCIIALNGTAIVLLTRFLIPGVLELGYMYSIAEWKIYFGELLFLEAVLALFWYLN
YRGADVVSKVQVVLAVILAIGVLALLVGAIVSPTSQWQNIEPWFAQDKSVIASIAAVT
AIAPWLFVGFDTIPQAAEEFNFSAKTGVRLMLLSIVCGIVTYSIITLAVAAVIPYQEL
LALNPVWHTGYTVSLSLGKVGSIVLALAVLSAILTGINGFFIASSRLMFSMGRAHILP
VWFSSLHKTHKTPHNALNFTLVVVAIAPFFGREVLSWVVDMSSIGTIVAYFFASASAF
VIMRKHEDNCNISGILGCMASLVCLGLLTLPMSPACIGPESWHVLVAWFILGVFFYIV
RYKAVHAISEEERTYMILGESDLKEHIAQRAASKPDQLAA"
misc_feature 275136..276464
/locus_tag="Ddes_0221"
/note="Amino acid transporters [Amino acid transport and
metabolism]; Region: PotE; COG0531"
/db_xref="CDD:30877"
gene complement(277508..278539)
/locus_tag="Ddes_0222"
/db_xref="GeneID:7283876"
CDS complement(277508..278539)
/locus_tag="Ddes_0222"
/inference="protein motif:PFAM:PF00589"
/note="PFAM: integrase family protein;
KEGG: dvl:Dvul_1487 phage integrase family protein"
/codon_start=1
/transl_table=11
/product="integrase family protein"
/protein_id="YP_002478815.1"
/db_xref="GI:220903503"
/db_xref="InterPro:IPR002104"
/db_xref="GeneID:7283876"
/translation="MSIGCKKNGTWYVQYRIPGEKYPLREYTGIGEEGKTAARELDRQ
VKEQKAKGAVTKRVQRTGRIHLDQLAQAYLTERKLSGKSAQWLEEMETLFNKKILPRL
CFCPVDDLKYPDVIAMAAEAWPTVSLATRQRYLGYLKAAFNFGRKHELTATNPLDKWE
RQKEPRLEFNFSVPDLLKLYDCAAPHLAWAIKVEWHIGTRPGRSELFALRWRHIDFES
RIIKIYGTKTDGSFRAVPMLPHFEAALKEKRKQALGEFVVDYKGRQVKKLQTAFEGAQ
RRANLGYHVRLYDIRHLFATTMLNGGADHAAVAKLLGHSAVSTTHKWYYHVLPGETRR
ALAVKPDPF"
misc_feature complement(277526..278377)
/locus_tag="Ddes_0222"
/note="Integrase [DNA replication, recombination, and
repair]; Region: XerC; COG0582"
/db_xref="CDD:30927"
misc_feature complement(277547..277999)
/locus_tag="Ddes_0222"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature complement(order(277568..277570,277676..277684,
277859..277861,277937..277942))
/locus_tag="Ddes_0222"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
misc_feature complement(order(277568..277570,277598..277600,
277667..277669,277676..277678,277859..277861,
277940..277942))
/locus_tag="Ddes_0222"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature complement(order(277568..277570,277598..277600,
277667..277669,277676..277678,277940..277942))
/locus_tag="Ddes_0222"
/note="active site"
/db_xref="CDD:29495"
gene complement(278544..278927)
/locus_tag="Ddes_0223"
/db_xref="GeneID:7283877"
CDS complement(278544..278927)
/locus_tag="Ddes_0223"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478816.1"
/db_xref="GI:220903504"
/db_xref="GeneID:7283877"
/translation="MATAQGQQLFKLAHVWYWLPPGAAFFHKLIEVDGDAAIVVAGMV
ERFGIGLVKAQAGRDLDGDVFVNVPKLLDQRVVIGQALFTRQGAAKQATGSALKTWMP
LWLTAITFYTLPDDLKFGKNLHSLP"
gene 279047..279469
/locus_tag="Ddes_0224"
/db_xref="GeneID:7283878"
CDS 279047..279469
/locus_tag="Ddes_0224"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478817.1"
/db_xref="GI:220903505"
/db_xref="GeneID:7283878"
/translation="MLMFVGSHTRKLYICTSTRNLAAYRQIQEALVLSRFELQDWTRF
LPKPGPDFDTRKNEDPHGAAFAYCSRALGSADMVVYIGPSGCDASAELGIAWAAGVPV
WGVAGPDQRPGVMIKGCVTRWFPTVEALVDQLTRWRGW"
gene 279541..280083
/locus_tag="Ddes_0225"
/db_xref="GeneID:7283879"
CDS 279541..280083
/locus_tag="Ddes_0225"
/inference="protein motif:PFAM:PF02498"
/note="PFAM: BRO domain protein;
KEGG: ppw:PputW619_1315 prophage antirepressor"
/codon_start=1
/transl_table=11
/product="prophage antirepressor"
/protein_id="YP_002478818.1"
/db_xref="GI:220903506"
/db_xref="InterPro:IPR003497"
/db_xref="GeneID:7283879"
/translation="METVRNSFVFGNSDVRVAQDETGVLWFVAKDVAEALEYQESSIT
QIINLVQSIPEEWKGLKPIKTLGGRQEVHCLAEPGLYWFLGRSDKPKALPFQKWIYGE
VLPSIRKTGGYDLRLNMDEVKQIVRLPEPYKRDAFRRLLAQAGKHNDKSEGTRLMLNI
CCIFAAAETCSPLDQARLTI"
misc_feature 279580..279855
/locus_tag="Ddes_0225"
/note="BRO family, N-terminal domain; Region: Bro-N;
pfam02498"
/db_xref="CDD:202258"
gene 280583..280843
/locus_tag="Ddes_0226"
/db_xref="GeneID:7283880"
CDS 280583..280843
/locus_tag="Ddes_0226"
/inference="protein motif:PFAM:PF04365"
/note="PFAM: protein of unknown function DUF497;
KEGG: gur:Gura_0581 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478819.1"
/db_xref="GI:220903507"
/db_xref="InterPro:IPR007460"
/db_xref="GeneID:7283880"
/translation="MKFEYDPAKSAANKIKHGLTFEEAKALWEDENLLEVPVLRTGEE
RYLVIGAISGKMWTGVITYRGGAVRIISVRRSRKEEVEYYES"
misc_feature 280595..280825
/locus_tag="Ddes_0226"
/note="Protein of unknown function (DUF497); Region:
DUF497; pfam04365"
/db_xref="CDD:146812"
gene 280833..281087
/locus_tag="Ddes_0227"
/db_xref="GeneID:7283881"
CDS 280833..281087
/locus_tag="Ddes_0227"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_1495 CopG family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478820.1"
/db_xref="GI:220903508"
/db_xref="GeneID:7283881"
/translation="MSHEKQISAEEFDRRFDAGEDISGHVDWTAARRPNKQTQRVNVD
FPVWMVDALDTEARHLGVSRQALVKVWIANCLARDSHSAR"
gene 281236..281439
/locus_tag="Ddes_0228"
/db_xref="GeneID:7283882"
CDS 281236..281439
/locus_tag="Ddes_0228"
/inference="protein motif:PFAM:PF01809"
/note="PFAM: protein of unknown function DUF37;
KEGG: ilo:IL2081 alpha-hemolysin family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478821.1"
/db_xref="GI:220903509"
/db_xref="InterPro:IPR002696"
/db_xref="GeneID:7283882"
/translation="MMKKLVLACIRWYQRRPSSLHARCRFEPTCSEYMALAVQKYGTL
RGLWLGVRRIARCRPPYGGVDYP"
misc_feature 281239..281436
/locus_tag="Ddes_0228"
/note="Haemolytic domain; Region: Haemolytic; pfam01809"
/db_xref="CDD:201984"
gene 281464..281712
/locus_tag="Ddes_0229"
/db_xref="GeneID:7283883"
CDS 281464..281712
/locus_tag="Ddes_0229"
/inference="similar to AA sequence:KEGG:YpsIP31758_1761"
/note="KEGG: ypi:YpsIP31758_1761 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478822.1"
/db_xref="GI:220903510"
/db_xref="GeneID:7283883"
/translation="MDYEYKTVPAPMVLSIKTEKEAEQAIYNFGNMINREAGDGWEFH
SMETITTEEAPGCFSGGKATTRHYNMLIFKREKPTSGE"
misc_feature 281470..281691
/locus_tag="Ddes_0229"
/note="Domain of unknown function (DUF4177); Region:
DUF4177; pfam13783"
/db_xref="CDD:205956"
gene 281725..282606
/locus_tag="Ddes_0230"
/db_xref="GeneID:7283884"
CDS 281725..282606
/locus_tag="Ddes_0230"
/inference="similar to AA sequence:KEGG:Ava_0171"
/note="KEGG: ava:Ava_0171 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478823.1"
/db_xref="GI:220903511"
/db_xref="GeneID:7283884"
/translation="MAKIDEVGPWSIKKLDLLRNYLIAYTQIMTSEKIKSWCKSRHYV
DAFAGATYHVDKESYELVEGSPRIALNLEPGFDTYSFIDMDRRRIEDTIDPLRDEYPE
KANNIFTHCGDCNQILTEKILPQFPQSGFCPQRGFMFLDPYGINLNWSTVEAVANSRI
FDVLINFSVMGVYRKLGGKPPSDCDRQKINALMGTEDWFEVAYAENKQLSLLELAEPQ
YERRSREIAERLVKYYQERLQTCFKYVSRAVIMKNSSGGPMYALILASHAELAKKKME
EIFARDKKRPNVNVTYG"
gene 282615..283364
/locus_tag="Ddes_0231"
/db_xref="GeneID:7283885"
CDS 282615..283364
/locus_tag="Ddes_0231"
/inference="protein motif:PFAM:PF07505"
/note="PFAM: Gp37Gp68 family protein;
KEGG: rca:Rcas_0327 Gp37Gp68 family protein"
/codon_start=1
/transl_table=11
/product="Gp37Gp68 family protein"
/protein_id="YP_002478824.1"
/db_xref="GI:220903512"
/db_xref="InterPro:IPR011101"
/db_xref="GeneID:7283885"
/translation="MALSKIEWTEASWNPVTGCDKISAGCKNCYAERMAMRLKAMGNP
NYADGFKVTLQPQMLDVPQRWSTSKTIFVNSMSDLFHEDVPLDYIKQVFEVMRLCPHH
TFQVLTKRSERLRELAPQLRWAHNIWMGVSVENADCTFRIDHLRNVPAVVRFLSCEPL
LGPLDNLNLDCITWLIAGGESGPKARPMEKAWASSLRDQCVARDIPFFFKQWGGVNRK
KTGRVLEGKIWDEMPEHPVKKNLLRVARAAS"
misc_feature 282624..283313
/locus_tag="Ddes_0231"
/note="Phage protein Gp37/Gp68; Region: Gp37_Gp68;
pfam07505"
/db_xref="CDD:116125"
gene complement(283391..283552)
/locus_tag="Ddes_0232"
/db_xref="GeneID:7283886"
CDS complement(283391..283552)
/locus_tag="Ddes_0232"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478825.1"
/db_xref="GI:220903513"
/db_xref="GeneID:7283886"
/translation="MKKNHSQPKASEEKPNNEKPINFITEFRHWRSGEVLRAEDYGIK
AFPIPIKKG"
gene complement(283688..283942)
/locus_tag="Ddes_0233"
/db_xref="GeneID:7283887"
CDS complement(283688..283942)
/locus_tag="Ddes_0233"
/inference="similar to AA sequence:KEGG:ESA_00350"
/note="KEGG: esa:ESA_00350 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478826.1"
/db_xref="GI:220903514"
/db_xref="GeneID:7283887"
/translation="MLVYELEDAIYETEGIQIIIRANRNEETELDYDYQRACSGNTTL
SELRRGRLSDLGERYEYEVIDGDNDTPNGRTKLSTIRDSY"
gene 284293..284514
/locus_tag="Ddes_0234"
/db_xref="GeneID:7283888"
CDS 284293..284514
/locus_tag="Ddes_0234"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478827.1"
/db_xref="GI:220903515"
/db_xref="GeneID:7283888"
/translation="MSFPSFLSHRLSLVQEQQLELAVLAEHVKRGSGHMRRLALECLA
QRQAELAADLAQVAQLAAPRAALRKEVAA"
gene 284511..284972
/locus_tag="Ddes_0235"
/db_xref="GeneID:7283889"
CDS 284511..284972
/locus_tag="Ddes_0235"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478828.1"
/db_xref="GI:220903516"
/db_xref="GeneID:7283889"
/translation="MNCAHIQTIHFDTPTEVLAALERQRGDFADLADESATVIQAVGK
AITPPPQALEDRTGARRALENQQAQLVWLAAETGAMLAALADTREDTAMPAPHPQPCE
TSTVLRLYNLGASLDHLCATLPEEQAGLALLLRMISAELDRCAADLDEAEA"
gene complement(285017..285397)
/locus_tag="Ddes_0236"
/db_xref="GeneID:7283890"
CDS complement(285017..285397)
/locus_tag="Ddes_0236"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: mmw:Mmwyl1_0594 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478829.1"
/db_xref="GI:220903517"
/db_xref="GeneID:7283890"
/translation="MGVISEGKAALELTRELVSYLKKAGEHDPKLMGMFEDLREKVLS
LYESDIELRQQVRELEEKVKLRENTFFNRKNGAYYIGTPEDTKDGPFCAKCFHEKEEL
VPMFEDSYDGEYMGRCPVCKSVIG"
misc_feature complement(285206..>285316)
/locus_tag="Ddes_0236"
/note="bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed; Region:
PRK11072"
/db_xref="CDD:182946"
gene complement(285407..285649)
/locus_tag="Ddes_0237"
/db_xref="GeneID:7283891"
CDS complement(285407..285649)
/locus_tag="Ddes_0237"
/inference="protein motif:PFAM:PF04606"
/note="PFAM: transcriptional activator Ogr/delta;
KEGG: dvl:Dvul_2769 phage transcriptional activator,
Ogr/delta"
/codon_start=1
/transl_table=11
/product="transcriptional activator Ogr/delta"
/protein_id="YP_002478830.1"
/db_xref="GI:220903518"
/db_xref="InterPro:IPR007684"
/db_xref="GeneID:7283891"
/translation="MRIYCSRCGQKAIIRTSKQLGGTRKLYCLCGDPQCGHSFVMDLS
FSHTISPSALDLPEKVRNGLQQQSPGQILSLFAVLG"
misc_feature complement(285530..285649)
/locus_tag="Ddes_0237"
/note="zinc-ribbon domain; Region: zinc_ribbon_5; cl11777"
/db_xref="CDD:209383"
misc_feature complement(285503..285640)
/locus_tag="Ddes_0237"
/note="Ogr/Delta-like zinc finger; Region: Ogr_Delta;
pfam04606"
/db_xref="CDD:203053"
gene complement(285696..286730)
/locus_tag="Ddes_0238"
/db_xref="GeneID:7283892"
CDS complement(285696..286730)
/locus_tag="Ddes_0238"
/inference="protein motif:TFAM:TIGR01540"
/note="TIGRFAM: phage portal protein, PBSX family;
PFAM: portal protein;
KEGG: dvl:Dvul_2768 PBSX family phage portal protein"
/codon_start=1
/transl_table=11
/product="phage portal protein, PBSX family"
/protein_id="YP_002478831.1"
/db_xref="GI:220903519"
/db_xref="InterPro:IPR006430"
/db_xref="InterPro:IPR006944"
/db_xref="GeneID:7283892"
/translation="MKKHKKRPGGQHAADTTGGKSRAIAFSFGEPESVMTGELSQYLG
VYLQDNGQYYQTPVPLTGLARLLRANAYHWPMLEFKVNKLLRGFMGSAALDRITMRKA
ATDYMVFANAYLQRLYNMFGQVVGYTHLAAINMRRAKADDQYIMLGVDGSMTTFEPGE
VLHVKNYDVSQEIYGLPSYLGAIQSMLLQEDATLFRRRYYRNGAHMGYVFYSSSAYLD
LDDESALRMAMKESKGVGNFRNLFLHIPNGKEKDIQILPVGDFSTKDELEKIKNISRD
DIIAAHRIPPALANIIPSVAGGLGDITAADAVYVQNEIEPLQEDLGVVNDDLPEHLRV
HFAPATAPMP"
misc_feature complement(285705..286730)
/locus_tag="Ddes_0238"
/note="Phage-related protein [Function unknown]; Region:
COG4695; cl01923"
/db_xref="CDD:194210"
misc_feature complement(285741..286574)
/locus_tag="Ddes_0238"
/note="phage portal protein, PBSX family; Region:
portal_PBSX; TIGR01540"
/db_xref="CDD:162410"
gene complement(286741..288588)
/locus_tag="Ddes_0239"
/db_xref="GeneID:7283893"
CDS complement(286741..288588)
/locus_tag="Ddes_0239"
/inference="protein motif:PFAM:PF03237"
/note="PFAM: protein of unknown function DUF264; putative
terminase ATPase subunit;
KEGG: dvl:Dvul_1472 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478832.1"
/db_xref="GI:220903520"
/db_xref="InterPro:IPR004921"
/db_xref="InterPro:IPR010332"
/db_xref="GeneID:7283893"
/translation="MPEPDTDRKQGQNDPKSQPPRRRYPEEVKSAARSLFLRHWKVAE
VAETLGVPERTIYDWSVKGAWLDLLSHEGPDEAINRRLEVLVGRDNKTQAELREIDLL
ISSQERRLRMREREQAQAATVGQSGEAAGGRERENPFHGGTTAKKSGKKSRKKNDVSH
LTAEDFKERLHKRFFAYQREISATKEHRNRMFLKARQLGFTWFFAQEAFEDAVLNGDN
QIFLSATRAQSEIFLHYIRDICGEAFDIELKGNPLVLHTAKGPATLYFLATSSRSAQG
YHGHVYGDEFFWMPKFKEFWKVASGMAAHAKWRRTMFSTPSIITHEAYPRWSGKEYLS
RFKNPAPWPDKAALRQGLICPDNTYRRIVTLDDAEAGGCNLFNRADLEQEYSPEDMRQ
LFGCEFIDDTLAVFLLGLLEGCMEDPDGWGIDLRQARPVDNAGVWGGYDPSRTRDDAS
FVVLLPPQKAGDKIRTLERHTWKGKSYLWQVGRIRELHDKYRFQHMGIDVTGPGQAVL
ENVRLFCPVAMPITYSLATKAALVLKALEVMEQKRLAWDAAQTDIAHAFMTIRQVATP
SGQITYAAHRTDTTGHADVAWAIMHALAAEPLARQSRAGGKTSSLAFSS"
misc_feature complement(286777..288522)
/locus_tag="Ddes_0239"
/note="terminase ATPase subunit; Provisional; Region: P;
PHA02535"
/db_xref="CDD:164931"
misc_feature complement(288343..288510)
/locus_tag="Ddes_0239"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 288701..289531
/locus_tag="Ddes_0240"
/db_xref="GeneID:7283894"
CDS 288701..289531
/locus_tag="Ddes_0240"
/inference="protein motif:PFAM:PF05929"
/note="PFAM: capsid scaffolding;
KEGG: dvl:Dvul_1471 phage capsid scaffolding"
/codon_start=1
/transl_table=11
/product="capsid scaffolding"
/protein_id="YP_002478833.1"
/db_xref="GI:220903521"
/db_xref="InterPro:IPR009228"
/db_xref="GeneID:7283894"
/translation="MAKLTTDFIKVAQVGPAADGRTIHEEWLREMAESYNPATYTAML
WPEHCRWFGNLGEVLELRAGPDEAGVFSLFARFAPNAAMLDYNAAGQGLFYSIEVSEN
FADSGKTYLSGLGVTDSPASLGMPSTRFTAQKDINCFSNVPFAPIKPEDKDDAPGWFK
RFFPQFFNKTEGAAPEAAPNPKKEPNMEELEARVTAVEETVAALAEQVGGFEGRLAAL
EVDVAAGGSGDASGGDFAVKALARQIGALRNEFRQVASVARPGTTAPKTLGAARKPLL
"
misc_feature 288704..>289096
/locus_tag="Ddes_0240"
/note="Phage capsid scaffolding protein (GPO) serine
peptidase; Region: Phage_GPO; cl15838"
/db_xref="CDD:210238"
gene 289565..290599
/locus_tag="Ddes_0241"
/db_xref="GeneID:7283895"
CDS 289565..290599
/locus_tag="Ddes_0241"
/inference="protein motif:TFAM:TIGR01551"
/note="TIGRFAM: phage major capsid protein, P2 family;
PFAM: major capsid protein P2;
KEGG: dvl:Dvul_2765 P2 family phage major capsid protein"
/codon_start=1
/transl_table=11
/product="phage major capsid protein, P2 family"
/protein_id="YP_002478834.1"
/db_xref="GI:220903522"
/db_xref="InterPro:IPR006441"
/db_xref="GeneID:7283895"
/translation="MRKRTSERFAREVLSALAQGYSVPSVGEHFAIEPSVAQRLNDKI
VEQSTFLPRINIVPVDELVGENLLGYAKEPVTSRTDTSGSGERKPKDVLGLGKYDYQL
HKTDSDVAIRYNTIDVWAKFPDLADHYARYVQERIAADRELIGWYGERAVATTDLVAN
PLMQDVNKGWLQYMRDNLPANILTEGEHAGEIRIGKGGDYSCLDVAINDMVEGIPYYL
QKDLVALIGRDLIVRERAMLFEAVQGTPTEKAAMDSFSQKYGGLPWETPSFFPARGLV
ITPLANLSLYHQDTSWRRKIEDNAKKDQYEDYLSRNEGYVVETPEQLVAWEFANVKLP
FEEGGQTVWK"
misc_feature 289565..290563
/locus_tag="Ddes_0241"
/note="Phage major capsid protein, P2 family; Region:
Phage_cap_P2; cl04947"
/db_xref="CDD:174828"
gene 290599..291348
/locus_tag="Ddes_0242"
/db_xref="GeneID:7283896"
CDS 290599..291348
/locus_tag="Ddes_0242"
/inference="protein motif:PFAM:PF05944"
/note="PFAM: small terminase subunit;
KEGG: dvl:Dvul_2764 phage small terminase subunit"
/codon_start=1
/transl_table=11
/product="small terminase subunit"
/protein_id="YP_002478835.1"
/db_xref="GI:220903523"
/db_xref="InterPro:IPR010270"
/db_xref="GeneID:7283896"
/translation="MKFGIMRAHQDRVGNEGRVIAQLPKGKAPVSPQGKGLLAGRQLE
EFLTASLAEDLAVLKGMAATERKAAHKRDVLLPKYAAYVDRLRQQGQKHELLGYWLVW
LFDAGKMDEAMAFAEWAMQCGLKLPERFQSAVPYFVASQVAAWAEGEFNGNRSVEPYF
TNCALGIAEDPDCWNLPDDLTARYCRLQGLVAERGGRLEEAEAHLQRALDLGAKVKTA
LDRIRKKIERGDTSPEDGATGDDSPAAPSED"
misc_feature 290743..291135
/locus_tag="Ddes_0242"
/note="Phage small terminase subunit; Region:
Phage_term_smal; pfam05944"
/db_xref="CDD:147866"
gene 291453..291920
/locus_tag="Ddes_0243"
/db_xref="GeneID:7283897"
CDS 291453..291920
/locus_tag="Ddes_0243"
/inference="protein motif:PFAM:PF05926"
/note="PFAM: head completion protein;
KEGG: dvl:Dvul_2763 prophage PSPPH06, putative head
completion/stabilization protein"
/codon_start=1
/transl_table=11
/product="head completion protein"
/protein_id="YP_002478836.1"
/db_xref="GI:220903524"
/db_xref="InterPro:IPR009225"
/db_xref="GeneID:7283897"
/translation="MSSLKGFGITTGKTATTVLDGDGFYPDLAVAEFMELYRLPAEYA
EALIADHLDLARLWAAGELAAWREKQQASGHTALDQISVHGISGGALRLYKRAVFCRA
KALLLPQFATIERREPARNDAKEAPESAQAFFAQAANALAAITGRTFISVEAI"
misc_feature 291504..291917
/locus_tag="Ddes_0243"
/note="Phage head completion protein (GPL); Region:
Phage_GPL; pfam05926"
/db_xref="CDD:147853"
gene 291920..292444
/locus_tag="Ddes_0244"
/db_xref="GeneID:7283898"
CDS 291920..292444
/locus_tag="Ddes_0244"
/inference="similar to AA sequence:KEGG:Dvul_2762"
/note="KEGG: dvl:Dvul_2762 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478837.1"
/db_xref="GI:220903525"
/db_xref="GeneID:7283898"
/translation="MRKLAALVGHILEVTGLPPEQVFAYADQGDLYPLGRDRAPLRPE
PGEDAPVLRQVELGTFRYDGVIQIERYPGAGHDFAALITTWLIERDPARDGLADPALD
IELNIRGGDCDVQMTIEFEERLEAVEDPAGNIPFDGTRWSLASVTITPATTLTALAAV
NTGAGHMPGKGDGR"
misc_feature 291920..292345
/locus_tag="Ddes_0244"
/note="P2 phage tail completion protein R (GpR); Region:
P2_Phage_GpR; pfam06891"
/db_xref="CDD:148486"
gene 292441..293124
/locus_tag="Ddes_0245"
/db_xref="GeneID:7283899"
CDS 292441..293124
/locus_tag="Ddes_0245"
/inference="similar to AA sequence:KEGG:Dvul_2761"
/note="KEGG: dvl:Dvul_2761 phage virion morphogenesis
protein"
/codon_start=1
/transl_table=11
/product="phage virion morphogenesis protein"
/protein_id="YP_002478838.1"
/db_xref="GI:220903526"
/db_xref="GeneID:7283899"
/translation="MSDFRLTIKSDARNSLLDRQLNAFKHDVRARQKHAHALGGMVRS
AAKQNIRGQKTFEGQPFTPRQASRKKAAMLRGLAKKLAVISKASEGGGVIVGWRNNFE
AGIAGRHQWGQGEDWTPQRARAERGIPNYKAPCTRAQAKALNQAGYRRARKGKPAKKM
SAKALQQSLTLGQAALILRLMRTGQAKGKQHWRDTVPARPFLGVTSAKAKEYSEQLAA
KIMQTTRKG"
gene 293136..294245
/locus_tag="Ddes_0246"
/db_xref="GeneID:7283900"
CDS 293136..294245
/locus_tag="Ddes_0246"
/inference="similar to AA sequence:KEGG:Dvul_2760"
/note="KEGG: dvl:Dvul_2760 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478839.1"
/db_xref="GI:220903527"
/db_xref="GeneID:7283900"
/translation="MLGTVQVNNLNLIQGPLTAVENFLLFTGQGAGTNEGKLISVNAQ
SDLDAVLGLESSNLKKQVAAAQLNAGQNWNAAVLPLRDGDTWQDAVDLAVEEMQVEGI
CLTDPVSQAVEVERMQAKAETIMAKYMAPVFMAAAARPPLETETWEDYRSAISPITSG
LVADQVTLTASMYGHELGTYMGRLCNKSVTVADSPIRVKTGSLLGEWSVKPTDKDGRN
LDMATLYALDKARFSVPQWHPGYDGIYWGDGNVLDVNGGDYQVIENLRVVQKCMRRVY
PLAVARIGDRTLNETPESIAAAQTYFARPLREMAKKRKILGVPFPGEIHPPAKDAITL
VWLSKYELEVWITARPYNCPKAITCNLLLDLTNYA"
misc_feature 293136..294227
/locus_tag="Ddes_0246"
/note="Protein of unknown function (DUF2586); Region:
DUF2586; pfam10758"
/db_xref="CDD:151230"
gene 294255..294725
/locus_tag="Ddes_0247"
/db_xref="GeneID:7283901"
CDS 294255..294725
/locus_tag="Ddes_0247"
/inference="similar to AA sequence:KEGG:Dvul_2759"
/note="KEGG: dvl:Dvul_2759 prophage PSPPH06, putative tail
tube protein"
/codon_start=1
/transl_table=11
/product="prophage PSPPH06 tail tube protein"
/protein_id="YP_002478840.1"
/db_xref="GI:220903528"
/db_xref="GeneID:7283901"
/translation="MSRQRIGAKDFDITIGDLSLSVSQATLGITDNIEVAKDKGVPNG
WVAGDVGAEGDMDLDALGVSILSEAAASAGSWRELPEFDMLFFAKAASGEEMKVEAFG
CKLKVESLLTINANEGASKHTTKVKFLVTSPDFVHINGVPYLGASETEGIVTPS"
misc_feature 294279..294686
/locus_tag="Ddes_0247"
/note="Protein of unknown function (DUF2597); Region:
DUF2597; pfam10772"
/db_xref="CDD:119292"
gene 294737..295120
/locus_tag="Ddes_0248"
/db_xref="GeneID:7283902"
CDS 294737..295120
/locus_tag="Ddes_0248"
/inference="protein motif:PFAM:PF08291"
/note="PFAM: protein of unknown function DUF882; Peptidase
M15A;
KEGG: rsh:Rsph17029_1851 peptidase M15A"
/codon_start=1
/transl_table=11
/product="peptidase M15A"
/protein_id="YP_002478841.1"
/db_xref="GI:220903529"
/db_xref="InterPro:IPR010275"
/db_xref="InterPro:IPR013230"
/db_xref="GeneID:7283902"
/translation="MPKLFRHFNEYSGPWPWPNFAPKEVSCSHCGEMYLDSESMDALQ
ELRESLGRPIVITSGHRCSAHNKAVGGVESSQHLKIAFDCACPANEQDSFVKKAVDAG
FRGIGRYPRRGFVHLDMGPRRQWTG"
misc_feature 294788..295090
/locus_tag="Ddes_0248"
/note="Peptidase M15; Region: Peptidase_M15_3; cl01194"
/db_xref="CDD:120464"
gene 295402..295674
/locus_tag="Ddes_0249"
/db_xref="GeneID:7283903"
CDS 295402..295674
/locus_tag="Ddes_0249"
/inference="similar to AA sequence:KEGG:ASA_1577"
/note="KEGG: asa:ASA_1577 phage protein"
/codon_start=1
/transl_table=11
/product="phage protein"
/protein_id="YP_002478842.1"
/db_xref="GI:220903530"
/db_xref="GeneID:7283903"
/translation="MRYSKFGPLVLCLLMVGGCSTSPLVKTEVIQRMPPEVLMQECPE
TVIPQSGNNGELLEVTASLRQDLEECNKKLKRLREWAHEHQTPGSK"
sig_peptide 295402..295479
/locus_tag="Ddes_0249"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.985) with cleavage site probability 0.391 at
residue 26"
misc_feature <295438..295542
/locus_tag="Ddes_0249"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 295674..296006
/locus_tag="Ddes_0250"
/db_xref="GeneID:7283904"
CDS 295674..296006
/locus_tag="Ddes_0250"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478843.1"
/db_xref="GI:220903531"
/db_xref="GeneID:7283904"
/translation="MQDPVDLTYLERILQFALLPASLYGAGGALMHSTRKGRSIGQAL
MEVVGGVVTANMVCPLIQSETPEKWHYTLFFLVGWGGLELVGRIYEAAVCALERYIHR
KINPESGE"
gene 296009..296269
/locus_tag="Ddes_0251"
/db_xref="GeneID:7283905"
CDS 296009..296269
/locus_tag="Ddes_0251"
/inference="similar to AA sequence:KEGG:ASA_3839"
/note="KEGG: asa:ASA_3839 phage protein"
/codon_start=1
/transl_table=11
/product="phage protein"
/protein_id="YP_002478844.1"
/db_xref="GI:220903532"
/db_xref="GeneID:7283905"
/translation="MKKTITLNVNGKILRFDMTPEIYNKYINELTANKKVAPTQNMLM
RAVHDEDKDTLKEFSAMPGAVFEIAAMLVEEYAPELTVTVGE"
misc_feature 296021..296266
/locus_tag="Ddes_0251"
/note="Protein of unknown function (DUF2765); Region:
DUF2765; pfam10963"
/db_xref="CDD:151410"
gene 296302..296454
/locus_tag="Ddes_0252"
/db_xref="GeneID:7283906"
CDS 296302..296454
/locus_tag="Ddes_0252"
/inference="similar to AA sequence:KEGG:Dvul_2753"
/note="KEGG: dvl:Dvul_2753 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478845.1"
/db_xref="GI:220903533"
/db_xref="GeneID:7283906"
/translation="MSQIFVLCRKWFPGREIDVDCMAEAVFLERDYWEKMNIAVANGI
AKAFNP"
gene 296460..298313
/locus_tag="Ddes_0253"
/db_xref="GeneID:7283907"
CDS 296460..298313
/locus_tag="Ddes_0253"
/inference="protein motif:TFAM:TIGR01760"
/note="TIGRFAM: phage tail tape measure protein, TP901
family;
PFAM: tail tape measure protein TP901 core region;
KEGG: dvl:Dvul_1457 TP901 family phage tail tape measure
protein"
/codon_start=1
/transl_table=11
/product="phage tail tape measure protein, TP901 family"
/protein_id="YP_002478846.1"
/db_xref="GI:220903534"
/db_xref="InterPro:IPR010090"
/db_xref="GeneID:7283907"
/translation="MATKLEKLFFAIGVQDGASSKIAKLQANISTLADRAKGAFIGMG
SAAMGLAGTALSIKALAGPAIELNHALGEVEALGVDSKGLKILQTEAGRFAMQYGKSA
TDVIKSSTAIQEQVDGLTAKELATFTTASNVLAMASRSSVDSMTGYVSKMHGLFETQA
GNMGQARWAEQMVGQTAFVTKAFKAKGEEISAGFDALGNRAVRAGISAGEQMAVIAAA
QRDMGGTAAGEQYKLLVDKARTAGRALGVSFTDQQGHMLSMVDILERVRAKYGDTLTT
AQQASLGKALGDEKAGAFLNTLLSKQGELTRVIKDVSTVTNMDGARASARQTTDAFQR
FGASLDYVKTNFMQKLLPTLERWTHKASDHLDTINKWITKYPNVARVIGYVVLALLSL
AAVVAVGTMAFNLFKLASMPVVGAIKGITSVFKLLTVAIRANPIGFLIWALIMCVMYW
DEVSASIGKVWGLLRGFFESLGPIGAPFVLLMDTLAERWRLFTDLFKDFSWTKLLRFA
IASVLTPLEFFINAIGKLLSHVPGMSEKAEKLMNWKAANLVDMPSTPEDLEVESLKQS
KTLQVQQGGVMPSGGSSSTMNNNGRSVTIGEQHIHVENATDMNDFWTMGLG"
misc_feature 296718..297320
/locus_tag="Ddes_0253"
/note="Phage-related minor tail protein; Region:
PhageMin_Tail; pfam10145"
/db_xref="CDD:204404"
gene 298313..298675
/locus_tag="Ddes_0254"
/db_xref="GeneID:7283908"
CDS 298313..298675
/locus_tag="Ddes_0254"
/inference="similar to AA sequence:KEGG:DVU1641"
/note="KEGG: dvu:DVU1641 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478847.1"
/db_xref="GI:220903535"
/db_xref="GeneID:7283908"
/translation="MAESMYRDLLIVDDDISLDGGGYPVLVTDRPCIAQDILHMIRES
GLLVELVGERDVRRRKTNLVKLTLMVDQDSRIKPGTTAIEEVWISRERVEFWLTAETL
AFGRISFLAIAGNATETT"
misc_feature 298382..298639
/locus_tag="Ddes_0254"
/note="Protein of unknown function (DUF2590); Region:
DUF2590; pfam10761"
/db_xref="CDD:119281"
gene 298675..299865
/locus_tag="Ddes_0255"
/db_xref="GeneID:7283909"
CDS 298675..299865
/locus_tag="Ddes_0255"
/inference="similar to AA sequence:KEGG:Dvul_1453"
/note="KEGG: dvl:Dvul_1453 uncharacterized phage Mu
protein GP47-like protein"
/codon_start=1
/transl_table=11
/product="phage Mu protein GP47-like protein"
/protein_id="YP_002478848.1"
/db_xref="GI:220903536"
/db_xref="GeneID:7283909"
/translation="MESFAKELFTGMVRDSGMPVTESDMRAEWEKLNQGEGSLIRNDS
SFSPFWRLITSIVTRPAQWLVNLLVEDVLPNSFLRFASGVYLDVYAWGLNLVRKGSAP
ARGRVVFTRATATGELNIPGGVYIETPPVNGVVYRVKTLAPAVISNGELALEVLVEAE
EHGEAWNLGAGYYSILSQPINGIVDVSNPADWLDTPGADTEKDDALRLRCRNQFAAVG
QLHHDAAYKALIAAFTGVRIDYLYFEARQAVRGPGTANCYVMVESGPAPQTLCDAING
YIMGGGNHGHGDDLLCLPIIEQPEALVATVHAVDEAGAERRAVLLEEVENRIRCAFRQ
NTAYNMTKPLPQSRFSFSRLGDELHAALPDLKSVEFHRGEDIVSLLTLPVLERLDITM
GAAA"
misc_feature 298735..>299361
/locus_tag="Ddes_0255"
/note="Baseplate J-like protein; Region: Baseplate_J;
cl01294"
/db_xref="CDD:174609"
gene 299862..300476
/locus_tag="Ddes_0256"
/db_xref="GeneID:7283910"
CDS 299862..300476
/locus_tag="Ddes_0256"
/inference="similar to AA sequence:KEGG:Dvul_1452"
/note="KEGG: dvl:Dvul_1452 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478849.1"
/db_xref="GI:220903537"
/db_xref="GeneID:7283910"
/translation="MSSPLSPFSLSFWMNGAENTKLGKAAHAWFSLLGKTAAWSLDNR
DPMTCDERTLNLLAWERCVRRYPGEPERLYRLRVKYAYANAKDSGQTAGWGRIFERLE
LGGLTLAERVPGQDWDRVGIIADDSQFPDQQNVLEIIIEDYGRTCRRYYFDSRIPIPA
LAHVGRFSWHQETVEAAMSTRAIADAGARLSVFDHHTATVEAHA"
gene 300473..302302
/locus_tag="Ddes_0257"
/db_xref="GeneID:7283911"
CDS 300473..302302
/locus_tag="Ddes_0257"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_1451 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478850.1"
/db_xref="GI:220903538"
/db_xref="GeneID:7283911"
/translation="MSTILTAAGESLIARLQAEGKALVIDTMILANVPGQDHTQAIAP
GVTVPAEAQIALRYAIPPQYRAYVNPNQVVYSAMLGSDMGDFTFNWQGLWCSEHETLV
AVATFPALEKRRYDEANGKTGNNLTRNFLLTFTGARELTGLTISADVWQLDFTVRLNG
MDERERLSNFDIYGHAFFDAQGWLLQKTSEAYAFTPGLGYVGGIRAELAEALPLATPE
AANLPQNVWLDVCLRHTGSDRIAEAAPMLTPPTAPLADSVADETCLMHYRALVARIED
DGTVTDLRPRKTSGALPIPDVATPEVAGTMRPDDVTCHMDADLLKVSGRYTICATAAA
TAAKTASLDHFALVPGVAVEVAFANVNIAANPTLNINGSGAKPITYCGVPVEVGALAQ
GQVYTLIYSGSSWQILGGMAPYPIGQYVWWEDTLVRPGFKPANANIISDFAATYPQMA
AYLSTPHGAARLFASLAEYEVAHNAAWATLADGSKVSWSNIGGVAKFFWNKAADTLLM
PDLTEMTRFMAGASLGVGGVQGDRGRNANGSALVVTGTGASGSGALYHPGGPSEFLTG
QGSNNARFSSLSIDLSRVQPIGPTFAPRRWGALACAYLGQPAS"
misc_feature 300473..300958
/locus_tag="Ddes_0257"
/note="Phage tail-collar fibre protein; Region: DUF3751;
pfam12571"
/db_xref="CDD:204968"
gene 302589..303167
/locus_tag="Ddes_0258"
/db_xref="GeneID:7283912"
CDS 302589..303167
/locus_tag="Ddes_0258"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvu:DVU2731 tail fiber assembly protein,
putative"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478851.1"
/db_xref="GI:220903539"
/db_xref="GeneID:7283912"
/translation="MAIAHRYSRPEQYYTSSAEDHGYPPYNSTPDDLPPRPWGRQWPQ
HVKGTWVLVEDHRERKAPAFSAEDEQEGTEYWLADDTHDTPARYMHTPGPLPTGALTT
RPEQPLADVKAAKVATIIAGHEAALAGAVALSDPTPSTVAVEAGLLAASDPEGLEYVR
NALAARRAALLAAVAAADTAEAVQAIVVSYAV"
gene 303177..303983
/locus_tag="Ddes_0259"
/db_xref="GeneID:7283913"
CDS 303177..303983
/locus_tag="Ddes_0259"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478852.1"
/db_xref="GI:220903540"
/db_xref="GeneID:7283913"
/translation="MLSTALPTEIRGGVCTGPEKPKEDGATARGPGRVTVISDRVFDF
RDYPTAKQDEVISGVNGAIVRMQRCVILGGIKAVLAGNGDHPGNDMRFGHWEMEDCFI
MGAGRRCPEVQDCVELTMRRCWIHNWGRAFDVRAFGGWAHRGGRLVAEDCLFTQSGGI
FSLGLRTTIADIFAHIGQAWNDEGLSGLLRARTYLPGVCRGLTASTGGLALATRCYRN
RCWIRLGNCDPFIDSAEALQIVADIDALMPEEGRKRMGSLVEKFKALEGI"
gene 303980..304954
/locus_tag="Ddes_0260"
/db_xref="GeneID:7283914"
CDS 303980..304954
/locus_tag="Ddes_0260"
/inference="similar to AA sequence:KEGG:Dvul_1449"
/note="KEGG: dvl:Dvul_1449 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478853.1"
/db_xref="GI:220903541"
/db_xref="GeneID:7283914"
/translation="MSFQPVSFSPSGSVADLSAGLGPALAGLQNGLAQGASSLQGLDL
PPSGSGDLEAQMKQAREQASTALAEPAAFMAITPFQHGIGTRKGEYAYLTPAQALATL
ASRFEDAQVTSDGDNTELALVVMLVATVSHAAMAQALEGFNKVYPIPQLEQVCRRAKA
LSTLETDKFTIPKGPGFPAWGQMAPQKNATGQAVAKALGGMLAAGEGAGMGATSPGDM
LAAFAQKQTQKLQEKAADLQALADSMTGGNDAWVGFSIHAPGPYLFRYLGKLPIPFDE
ASKCTSLLCWFGKPDQVAFYRESFGLCRRTLTNAVCLTCPGENAACPF"
gene 304942..305478
/locus_tag="Ddes_0261"
/db_xref="GeneID:7283915"
CDS 304942..305478
/locus_tag="Ddes_0261"
/inference="similar to AA sequence:KEGG:Dvul_2745"
/note="KEGG: dvl:Dvul_2745 nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="nucleoid DNA-binding protein"
/protein_id="YP_002478854.1"
/db_xref="GI:220903542"
/db_xref="GeneID:7283915"
/translation="MSFLILDDFTVPGFGLNVSVNEQLKSEDASGESSSTATAKKGNK
GKKLEVRLSLRFKHADDLRQLMRVAEATEGKDGKVYTITNDTANAVGMRQGSFTGNIK
VDEAENLRLWEISFTLTEHISVPEMDESRQGAMPVATQKNAGAAVGGDEEEKEENLSS
FERVLKQLNEAIGPESEQ"
gene 305475..306176
/locus_tag="Ddes_0262"
/db_xref="GeneID:7283916"
CDS 305475..306176
/locus_tag="Ddes_0262"
/inference="similar to AA sequence:KEGG:Dvul_1447"
/note="KEGG: dvl:Dvul_1447 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478855.1"
/db_xref="GI:220903543"
/db_xref="GeneID:7283916"
/translation="MKLLKRLTVNGVEYPVVAEEVRLDLDRPGVATFQVWAEERLEGQ
VNFALGWNMQSSLTQFFAGEVATSTPVDARQQKLFCRELSARLDKASPVALRHPTMRQ
VLAAYAEQTGLAFIVPDKPYADTKVPAFNGFGSAYHAMQSLGDVFHIDDYVWLTQGNG
KIFAGSWADSRWKGREVEIPQEMLKKISADGSRTIAAVPGLRPGCVVNASSGGGRVET
VTLAGIHMRFKCKQS"
gene 306161..307243
/locus_tag="Ddes_0263"
/db_xref="GeneID:7283917"
CDS 306161..307243
/locus_tag="Ddes_0263"
/inference="protein motif:PFAM:PF06715"
/note="PFAM: Gp5 domain protein;
KEGG: dvl:Dvul_2743 GP5 domain-containing protein"
/codon_start=1
/transl_table=11
/product="Gp5 domain-containing protein"
/protein_id="YP_002478856.1"
/db_xref="GI:220903544"
/db_xref="InterPro:IPR010609"
/db_xref="GeneID:7283917"
/translation="MQAILKNAILRLFPELSGGLHLDRYGRVLTIADAPGQGASSERF
RPRLAADIEILTADMEPDPAFPKYTAVPLPVPMGAGGEAGVFAPPRPGALVVVGFAYG
RQDHPIIRQIYGMGDSLPQVGPEEMLLQQGPTTFQRADAGGNWSRETDAAITDKSVSR
RVEAMDSSTKLATETKQVSEHSRLEVDGTRTVEVGTQLTMLAGSRADLGTLGVMNLTA
GGESTHTTGKNAVETVGGDHTSTVKGNRQINIAGNRSMLVQGADSVTVQGTETIKATG
KLVIESGQEILLRAPVIKIQGILTTEGYEGGPGSSTLYGDFTVRQGGVAVPDNDVTAG
SVSLRGHTHKGVQSGSGTTGTPVGGA"
misc_feature <306374..>306487
/locus_tag="Ddes_0263"
/note="Phage-related baseplate assembly protein; Region:
Phage_base_V; pfam04717"
/db_xref="CDD:203075"
gene complement(307382..307558)
/locus_tag="Ddes_0264"
/db_xref="GeneID:7283918"
CDS complement(307382..307558)
/locus_tag="Ddes_0264"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478857.1"
/db_xref="GI:220903545"
/db_xref="GeneID:7283918"
/translation="MTEKQKLEAVGFLAGWLDKLSVGCLVVGLFQPTHMIGGIIGSLT
CFAVAITLKIRSVK"
gene complement(307666..307884)
/locus_tag="Ddes_0265"
/db_xref="GeneID:7283919"
CDS complement(307666..307884)
/locus_tag="Ddes_0265"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478858.1"
/db_xref="GI:220903546"
/db_xref="GeneID:7283919"
/translation="MSQSISQAQCAPPQNPPDNVIMHLYHTAAAMEHLAGTLPEDMDG
LAHLIGKLGKDVEFCAILLDDAPPDAED"
gene 308230..309276
/locus_tag="Ddes_0266"
/db_xref="GeneID:7283920"
CDS 308230..309276
/locus_tag="Ddes_0266"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: sml:Smlt2077A hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478859.1"
/db_xref="GI:220903547"
/db_xref="GeneID:7283920"
/translation="MEFSWLEDIWNWIVNNPLFSGAGGAVLAVIIGGIFRKKQKSANS
IESTNNSGQITQSANSAAVYSIFGNNSPTVYTGVSIKEVQEFSTSLIQSECEKYNARA
LIEIEKRINEFNRFFLDVLQEVNFNFQTLSDPGKQYSIRNALAQYIRSDNKYTHEILI
GLVKKRLNSDNQSILQIGSDDALANISSLTAKQMDLIFSLCALRYFQIMTNDFKYFTA
CIEEISNVISVYDKLSIIDFNNIISKGFMLDEPLAVAWYSEENLGENIYYCNKEIFDR
ANVDMSTLEKIKENMQKIFPITHRANERLGEIALGKMGATPAALVLTDIVFFLRFPHI
KRASLHSVLNNLVG"
gene complement(309883..309958)
/locus_tag="Ddes_R0004"
/note="tRNA-Lys2"
/db_xref="GeneID:7283921"
tRNA complement(309883..309958)
/locus_tag="Ddes_R0004"
/product="tRNA-Lys"
/db_xref="GeneID:7283921"
gene complement(310156..311919)
/locus_tag="Ddes_0267"
/db_xref="GeneID:7283922"
CDS complement(310156..311919)
/locus_tag="Ddes_0267"
/EC_number="6.1.1.18"
/inference="protein motif:TFAM:TIGR00440"
/note="catalyzes a two-step reaction, first charging a
glutamine molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="glutaminyl-tRNA synthetase"
/protein_id="YP_002478860.1"
/db_xref="GI:220903548"
/db_xref="InterPro:IPR000924"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002016"
/db_xref="InterPro:IPR004514"
/db_xref="GeneID:7283922"
/translation="MAPETKSTVPSPAAPAAGSPSPSSNATAAESANKPGVDFIRARI
MEDNATGRYGGKVHTRFPPEPNGYLHLGHAKSICLNFGVANEFNGLCNLRFDDTNPTK
EEQEYVDSIREDVHWLGGDWQDREFYASNYFEQLYEYAEQLIKMGKAYVDDLSAEEIR
EHRGTLTEPGRESPWRNRSVEENLDLFRRMRAGEFADGERVLRAKINMASPNLVMRDP
TIYRIRHAEHHRTGNDWCIYPMYDFTHCLSDSIEGITHSLCTLEFVNNRELYDWVLET
LGVYHPQQIEFARLNLTYTVLSKRKLIQLVKEGHVQGWDDPRMPTLSGLRRRGVPPEA
LREFCSRIGLARADSTVEYSMLEFCVREHLNAHAARVMAVLDPIKVVIENYPEGQVEE
FDMPFHPEDESYGSRKVPFSREIYVERDDFRLDPPKKYHRLAPGVEVRLRYAYFITCR
EAVLDENGNVTELRCVYDPESRGGQSPDGRKVKGTIHWVSGAHALPAEVRLYEQLFSV
ENPNAAPEGQSFLDYINPQSLTVVEGLLEPALAELAVGRKVQFERLGYFCKDKDSTAE
RPVFNRTATLRDTWAKLEKKG"
sig_peptide complement(311833..311919)
/locus_tag="Ddes_0267"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.994) with cleavage site probability 0.948 at
residue 29"
misc_feature complement(310174..311823)
/locus_tag="Ddes_0267"
/note="glutaminyl-tRNA synthetase; Provisional; Region:
PRK05347"
/db_xref="CDD:180031"
misc_feature complement(<311467..311754)
/locus_tag="Ddes_0267"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(311701..311712)
/locus_tag="Ddes_0267"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(311701..311712)
/locus_tag="Ddes_0267"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(order(311701..311703,311710..311712))
/locus_tag="Ddes_0267"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(310810..>311238)
/locus_tag="Ddes_0267"
/note="catalytic core domain of glutaminyl-tRNA
synthetase; Region: GlnRS_core; cd00807"
/db_xref="CDD:185676"
misc_feature complement(311020..311034)
/locus_tag="Ddes_0267"
/note="KMSKS motif; other site"
/db_xref="CDD:185676"
misc_feature complement(310240..310818)
/locus_tag="Ddes_0267"
/note="tRNA synthetases class I (E and Q), anti-codon
binding domain; Region: tRNA-synt_1c_C; pfam03950"
/db_xref="CDD:202825"
gene 312303..312397
/locus_tag="Ddes_R0005"
/note="tRNA-Ser1"
/db_xref="GeneID:7283923"
tRNA 312303..312397
/locus_tag="Ddes_R0005"
/product="tRNA-Ser"
/db_xref="GeneID:7283923"
gene 312579..313205
/locus_tag="Ddes_0268"
/db_xref="GeneID:7283924"
CDS 312579..313205
/locus_tag="Ddes_0268"
/inference="similar to AA sequence:KEGG:APECO1_4218"
/note="KEGG: ecv:APECO1_4218 putative phage integrase"
/codon_start=1
/transl_table=11
/product="putative phage integrase"
/protein_id="YP_002478861.1"
/db_xref="GI:220903549"
/db_xref="GeneID:7283924"
/translation="MALTIKEIEAAKPKTNKKTGKQAPVKLSDENGLMLFVTSQNKIW
RARYFYMGKEQNLTLGKYPLMSLKEAREANFALRQQLDRGENPAKAKKAKQEEQLAVF
AEERRIARGESHPDSFGAIAEDWLSDVKKGWKRRTCVAEAKRVRKHLIEPLGHLLIKD
VKANEHIRPLFQRLEDAGKYTTLKKIAEKTVSIFNFAIALGKTENNPA"
misc_feature 312690..>313202
/locus_tag="Ddes_0268"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
gene 313363..313686
/locus_tag="Ddes_0269"
/db_xref="GeneID:7283925"
CDS 313363..313686
/locus_tag="Ddes_0269"
/inference="similar to AA sequence:KEGG:XfasM23_2250"
/note="KEGG: xfn:XfasM23_2250 putative plasmid conjugal
transfer protein"
/codon_start=1
/transl_table=11
/product="putative plasmid conjugal transfer protein"
/protein_id="YP_002478862.1"
/db_xref="GI:220903550"
/db_xref="GeneID:7283925"
/translation="MPSKKMHVSTYLTAEEYAEVKANADRAYLSLSRFLRLTSMGQPV
KSLEYEKERMELRALKGTIGQIGGLLKQAIVQDAAPREQINHLLRKLDSCRLDIQTLI
RKIGA"
misc_feature 313381..>313596
/locus_tag="Ddes_0269"
/note="conjugal transfer relaxosome component TraJ;
Provisional; Region: PRK13877"
/db_xref="CDD:184361"
gene 313965..314357
/locus_tag="Ddes_0270"
/db_xref="GeneID:7283926"
CDS 313965..314357
/locus_tag="Ddes_0270"
/inference="protein motif:TFAM:TIGR00632"
/note="TIGRFAM: DNA mismatch endonuclease Vsr;
PFAM: DNA mismatch endonuclease vsr;
KEGG: mca:MCA1618 DNA mismatch endonuclease, vsr"
/codon_start=1
/transl_table=11
/product="DNA mismatch endonuclease Vsr"
/protein_id="YP_002478863.1"
/db_xref="GI:220903551"
/db_xref="InterPro:IPR004603"
/db_xref="GeneID:7283926"
/translation="MTNRSANMKAIKSRNTKPELMLRALLRRLGFPGYRLHRKDLPGK
PDVAYIGRKKAIFVHGCFWHGHPCKNGYHLPQTNPGYWGPKIERNMTRDKEHIAKLEA
LGWSVLIVWECELNKVDIKIIVKNFMEN"
misc_feature 313974..314309
/locus_tag="Ddes_0270"
/note="Very Short Patch Repair (Vsr) Endonuclease.
Endonucleases in DNA repair that recognize damaged DNA and
cleave the phosphodiester backbone. Vsr endonucleases have
a common endonuclease topology that has been tailored for
recognition of TG mismatches; Region: Vsr; cd00221"
/db_xref="CDD:29956"
misc_feature order(313974..313985,314010..314015,314091..314093,
314142..314144,314229..314231,314238..314240,
314247..314249,314298..314300)
/locus_tag="Ddes_0270"
/note="additional DNA contacts [nucleotide binding]; other
site"
/db_xref="CDD:29956"
misc_feature order(313986..313988,313995..313997,314229..314231)
/locus_tag="Ddes_0270"
/note="mismatch recognition site; other site"
/db_xref="CDD:29956"
misc_feature order(314019..314021,314100..314102,314154..314156,
314241..314243)
/locus_tag="Ddes_0270"
/note="active site"
/db_xref="CDD:29956"
misc_feature order(314145..314147,314301..314303)
/locus_tag="Ddes_0270"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29956"
misc_feature 314148..314153
/locus_tag="Ddes_0270"
/note="DNA intercalation site [nucleotide binding]; other
site"
/db_xref="CDD:29956"
gene 314426..315358
/locus_tag="Ddes_0271"
/db_xref="GeneID:7283927"
CDS 314426..315358
/locus_tag="Ddes_0271"
/inference="protein motif:TFAM:TIGR00675"
/note="TIGRFAM: DNA-cytosine methyltransferase;
PFAM: C-5 cytosine-specific DNA methylase;
KEGG: ecp:ECP_3766 putative type II 5-cytosoine
methyltransferase"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_002478864.1"
/db_xref="GI:220903552"
/db_xref="InterPro:IPR001525"
/db_xref="GeneID:7283927"
/translation="MRIVSLFSGAGGLDLGLIQAGHEIVWANDFDKDCVATYKKNIGN
HAVLGDIKKINASQIPRGEVVVGGFPCQGFSQANLLRSGNDERNSLYIEFLRIVSSLQ
PRYFLAENVRGILSLEGGSAIKKILGDFNNAGYRLKYKLFNVADFGVPQSRFRVIIAG
TRKDIPKRLDYEYPAATHAQAPSQGKLPWVTIGEALKEIPEPGDGVALLNHDYSKYKI
TNRNFTGHRKTDPGKPSPTILARGNGQGGVCAIQHPNNHRRMSVREQAIIQSFPLDFE
FVGKLNSCYRQVGNAVPVEFAKFLGKELTRLEQR"
misc_feature 314426..315337
/locus_tag="Ddes_0271"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:73191"
misc_feature 314426..315337
/locus_tag="Ddes_0271"
/note="C-5 cytosine-specific DNA methylase; Region:
DNA_methylase; pfam00145"
/db_xref="CDD:201035"
misc_feature order(314444..314461,314507..314518,314570..314581,
314627..314629,314633..314635)
/locus_tag="Ddes_0271"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature order(314627..314629,314636..314641,314648..314659,
314666..314668,314684..314686,314750..314752,
314756..314761,314882..314884,314888..314890,
315044..315046,315050..315052,315071..315076,
315080..315085,315293..315295)
/locus_tag="Ddes_0271"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(314627..314629,314636..314638,314648..314650,
314750..314752,314756..314758,314882..314884,
314888..314890,315293..315295)
/locus_tag="Ddes_0271"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene 315355..316281
/locus_tag="Ddes_0272"
/db_xref="GeneID:7283928"
CDS 315355..316281
/locus_tag="Ddes_0272"
/inference="protein motif:TFAM:TIGR00675"
/note="TIGRFAM: DNA-cytosine methyltransferase;
PFAM: C-5 cytosine-specific DNA methylase;
KEGG: ecp:ECP_3766 putative type II 5-cytosoine
methyltransferase"
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="YP_002478865.1"
/db_xref="GI:220903553"
/db_xref="InterPro:IPR001525"
/db_xref="GeneID:7283928"
/translation="MKVVSLFSGAGGLDLGFKMAGHSIIWANDVYEDAVKTYRMNIGD
HILCKDISQVTTAEVPDSDIIIGGFPCQGFSVANIKRNISDERNTLYKHLLRVVSAKQ
PKFFLAENVKGILSLGKGHVIQMILNDFENIGYTMQLKLLNAADYGVPQTRQRVFIAG
VRKDLDVIFTYPDATHSCEGTGGLKKWRSVGEALAGLPDPDEPNDILNHDYSKYKLRF
NGYLGHREIDPGKPAPTVTARGDDRGGVVVLHHPNNQRRMSCRELAIVQGFPVDYAFF
GNRSSVYRQVGNAVPPLLAYAMAKQFNQYACE"
misc_feature 315355..316257
/locus_tag="Ddes_0272"
/note="Cytosine-C5 specific DNA methylases; Methyl
transfer reactions play an important role in many aspects
of biology. Cytosine-specific DNA methylases are found
both in prokaryotes and eukaryotes. DNA methylation, or
the covalent addition of a methyl group...; Region:
Cyt_C5_DNA_methylase; cd00315"
/db_xref="CDD:73191"
misc_feature 315355..316257
/locus_tag="Ddes_0272"
/note="C-5 cytosine-specific DNA methylase; Region:
DNA_methylase; pfam00145"
/db_xref="CDD:201035"
misc_feature order(315373..315390,315436..315447,315499..315510,
315556..315558,315562..315564)
/locus_tag="Ddes_0272"
/note="cofactor binding site; other site"
/db_xref="CDD:73191"
misc_feature order(315556..315558,315565..315570,315577..315588,
315595..315597,315613..315615,315679..315681,
315685..315690,315811..315813,315817..315819,
316027..316029,316033..316035,316054..316059,
316063..316068,316216..316218)
/locus_tag="Ddes_0272"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:73191"
misc_feature order(315556..315558,315565..315567,315577..315579,
315679..315681,315685..315687,315811..315813,
315817..315819,316216..316218)
/locus_tag="Ddes_0272"
/note="substrate interaction site [chemical binding];
other site"
/db_xref="CDD:73191"
gene 316286..317536
/locus_tag="Ddes_0273"
/db_xref="GeneID:7283929"
CDS 316286..317536
/locus_tag="Ddes_0273"
/inference="similar to AA sequence:KEGG:ECP_3768"
/note="KEGG: ecp:ECP_3768 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478866.1"
/db_xref="GI:220903554"
/db_xref="GeneID:7283929"
/translation="MLPQNFVPQKPFADFKWKWASLQCTESLNDPVVLLGVLFRMRKL
EPHGYKYSSPEFAAELQGLSNDIQDSIGVDLARRTGERNLIRNSGQYWRAVGLLSDDR
SGKIQLTEFGRRVADHDISQTEFAAITIQTFKLPNVQIQSNEECQEWIDHSLVIYPLR
LILTIVRELYKMGQGCITPDELIHIIIPLSGVKAELQDYVNFILWFRAKEITLIGWPD
CAPRDNDERIAREYLLFLSNYGYLNKHNGTTRWSENYQYNYELDAEIEAILAEPPRDE
SLQEALQQIRTTDIASEIERKRVGSQRISRPNQARFRKEVLRACERCLITNVTMPEVL
EAAHIKPFKYNGEDTIANGFAMRMDIHLLFDAGHLRISDAGEVYLSTRARMDYGATIP
PRIVLPGYTNLDFIRWRWDNYNGI"
misc_feature 316571..>316978
/locus_tag="Ddes_0273"
/note="AlwI restriction endonuclease; Region: RE_AlwI;
pfam09491"
/db_xref="CDD:204253"
misc_feature 317252..317398
/locus_tag="Ddes_0273"
/note="HNH endonuclease; Region: HNH_2; pfam13391"
/db_xref="CDD:205569"
gene complement(317570..318358)
/locus_tag="Ddes_0274"
/db_xref="GeneID:7283930"
CDS complement(317570..318358)
/locus_tag="Ddes_0274"
/inference="protein motif:PFAM:PF00665"
/note="PFAM: Integrase catalytic region;
KEGG: dvl:Dvul_2602 integrase catalytic subunit"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_002478867.1"
/db_xref="GI:220903555"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:7283930"
/translation="MRKACAIVLISRTLYAYAPTPRDDTDVIETLIRLADSYPRYGFG
KLFSLLRRQGYRWNHKRVHRIYRQLKLHLRRKGKKRLPTRNPQPLAVPPQANCCWSVD
FMHDSLSSGQRFRTFNVEDDYSRECLAIEVDTSLPAARILRVLDRVAAWRGYPEKLRM
DNGPELISIQMAEWAEAHGVELEFIQPGKPTQNSYVERFNRTYRTEVLDYYLFSSLAE
VKEITANWLKQYNEERPHESLGNIPPAEYLEINSPQKVSTFGWH"
sig_peptide complement(318308..318358)
/locus_tag="Ddes_0274"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.908) with cleavage site probability 0.908 at
residue 17"
misc_feature complement(317603..318304)
/locus_tag="Ddes_0274"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:32633"
misc_feature complement(<318161..>318256)
/locus_tag="Ddes_0274"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(317738..318064)
/locus_tag="Ddes_0274"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(317627..317827)
/locus_tag="Ddes_0274"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:205859"
gene complement(318415..318681)
/locus_tag="Ddes_0275"
/db_xref="GeneID:7283931"
CDS complement(318415..318681)
/locus_tag="Ddes_0275"
/inference="protein motif:PFAM:PF01527"
/note="PFAM: transposase IS3/IS911 family protein;
KEGG: dvu:DVU2011 ISD1, transposase OrfA"
/codon_start=1
/transl_table=11
/product="transposase IS3/IS911 family protein"
/protein_id="YP_002478868.1"
/db_xref="GI:220903556"
/db_xref="InterPro:IPR002514"
/db_xref="GeneID:7283931"
/translation="MQKSRFTESQIIRILKEAEGGRTVADVCREYGVSQATYYKWKSK
YGGMEAADIKRLKELEEENRKLKRMFANLSLEHEVLKDIIAKKL"
misc_feature complement(318559..318675)
/locus_tag="Ddes_0275"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature complement(order(318559..318567,318571..318576,
318670..318675))
/locus_tag="Ddes_0275"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
gene 320093..329368
/locus_tag="Ddes_0276"
/db_xref="GeneID:7283932"
CDS 320093..329368
/locus_tag="Ddes_0276"
/inference="protein motif:TFAM:TIGR01965"
/note="TIGRFAM: outer membrane adhesin like proteiin;
KEGG: sdn:Sden_0384 hypothetical protein"
/codon_start=1
/transl_table=11
/product="outer membrane adhesin-like protein"
/protein_id="YP_002478869.1"
/db_xref="GI:220903557"
/db_xref="InterPro:IPR001343"
/db_xref="InterPro:IPR002126"
/db_xref="InterPro:IPR010221"
/db_xref="GeneID:7283932"
/translation="MADVKLSRPASGQQFVIPSAPDARLVLDFPADQVSIDRPEGSSS
LFFHFDDGASIELQNFYGAYNKEALPEFEIDGQLIAGTDFFEAFGPDLVPAAGPASAE
RGARYNEYSDMGLAEGVWHLNELDYRLAFDTPQTDDEWAYGVIDNLAPTLSTGGAPIT
LGLTETGWDGVSTASPAPVRTTGSFTVRDPDGDSLTATVTIGGKTVAVSLAGPTTVES
DYGTLVITPSGRGSDVTFDFEYTLKEDPYSKADQLAQGEQVTDGIVISVNDGMGHTVN
QPVNVVITGSNDAPDITGVVSDIGGADGHTVKDDGVFGRQGDQKTGTIGTDENAAIHT
PGTENGQMRLSVSGKILAQDPDSDAELTFGFVDKSGSALAAGSELGMLPDGTTPITVT
DVSESDGILVIETDYGTLTLVTTGADAGSYTFTLHKDADATNRLAENEEITLTLRPTV
TDNHGATDGNAGVTRPDADGASSAVNDLVITIKGSNDLPTVESSSWTKTAPGSVTEDA
SVNTITGTITATDVDADEGATLRYGFNHNGTMVETLYVVPVGEADGKLTYALATEAPA
DGNYYGTLTITGSGASADYAFALNNDAPCTQALDDSSSKTGSGPDWSSLEVTVPVVVM
DAVGGYAQENIHLTINGVNDAPVFTSADASHSVKESGVYAEGERDGVLHSAENAATTD
DSFTTGGSVAARDVDGHGASDTLTYGLVDEHGKQFGGTSGEATIYVTAEYKDRAWTPS
YSSDPATADAPGYLGKLVMGKDGNYTFTLKNDGIADSIAEGDKVDLAFTPAVHDGTEY
NKAGEAPTIAITVNGSNDAPTITSHDSRLSVTEGAFGGEAGVASASGTVHGADVDKGD
ALSYHLTLGGDTGTLDGAALHGTLYVVSDGQGGVTLSADPVSGETYGKLIMSADGTYT
FTLDNDSPVVQKMTTDDKQTLDFNVAVVDDKGAYAHESVTLTINGANDAPYMLSQKGV
GTVKDDGVYSAGGDSGPLNQDELNPVTNTDAADPGAGTFKQSVSGAVKAEDYENNPLT
YKLDNSGSFPDSGAPAGYDDGNCTTITNDYGTLYLKDDGSYTFVLDMDSPEVNALGER
DSHVIKFPVSASDGNSSTSFDNAITITVKGTNDAPVLGEPQWTKGSEITQDLNASATT
RISGTVSATDVDSGDQANLKFYFVGDDGSSVATRFYVGLDGSLTATKPSGDYLGELNM
NSSGGKGTYTFTLNNASPTVQAMGETDTKDISFKIAVRDPQGAYDKQEGDVTFTIRGG
DDPTFINTGDLNQDHKLIEAGVMPKSTVTDADAREYKDSSAGVPTATGRIHATDTDAK
DQEELDKAPNTEGTKLHYIIKVGSESHDLNERMADAKADGKNAFTIDTQFGSLTIMRD
DAGGFKYEYAVDNTNPDVQKMNLGDKASDGFTVLVKDTVANKTVSEAPVKVTITGAND
RPTLDADSLKGGTIEITENTDGKNLVGRVEVADVEQGIGNKGGHSDYEAVSKGFTFSL
VTAKDALTAEQIAGLKTDGNLEDEKLFNPGSDSPVLQGEYGRLTIDQATGEYRYERTA
GLTTLAEGKTVTDVFYVRVKDADGAYSEIKPIEITIHGKDNAGWLTNNSLTVTEDGVT
GNVQGILNWKGDTEKLGANEDVSGGNMSGKLGWHDVDQGDTYKADGYTYGDAAVSAGG
AGAIPETPEVERSGNTYAVKGYGTVTVDANGNYAFTKSETDNGAFDALQAGQSITITI
PVTLGKDTAGADITQNLVITIKGTNDAPVVTDLPEIKAGVDISDIDWTSSVLVDFIQK
EAQNQLEYQKAHGGGWGNFDPNSWLIKAITAMNAEHPPYWLVAGYSKGDAGELINRTW
YSEARAEKILDAIQQDSHASDALKDSMADYNTAVATDVSKTDWTSSAFEQFIKQEVQN
QLDYQKAHGGGWNTFDPNSWLIKAIGSDLWLVEKYNDLGMDAWLATGTWFNADMAEKM
LHAIADNQAATDALKKLIADKVSDTVIGEGIADTATVLDPATGDVSSYATDVDDAADS
LKFFFVDKDGNVVQSHEGKYGTLVVQPNGQYTYVLNDNVAERVTETFEIYVRDPHNAV
ADKTIPVVITAKPIPGGGSGEGPGGGTGHDGMALTPGAAEVQEDGVLHVSGDMGDGTD
LALRLTGYTSAGADDSASGLSARTIVTDYGTITLLPDGTYTYALNNDSRAVQELTAHD
TIEQTFTVRNGKGEESTITITIKGANDAPYVVSQGDTVALKEEDGGWTHTDLTGSFTV
ADIDAGETESLTPSAGKSFTDNGDGTYTVEGEKGGIFTITKGADGQFTYTYKAAEGND
STNYRGIVEDTAKLIISNGAGAENQVTVDLKARLDYANDAPTLTGEDGKILLAEGSEH
VVIEDGGAKMVVTGKVQATDPDVDSSGRPDTLTYAIKDSATGMLDYMEGGEKLGTLIL
GKDGTYEFHLNTSSEAVQSLGAGETKDISFTVVVSDGHGGTATAQLPITITGTNDAPV
ISLHNVDGSGAAGAGALRDLTHGDMGADYTVGGELKFRDVDANDTVQLSLGGKIDGHD
LRGGDDTDPTHLDVWAVKDGSGWQQCAPGTEGAIKMGHMELDSAGGSGSGSTGYRFVG
DKAALALINKGEKLDVTVSINADDGNGGETSADFAVSITGTNTIPTITTEPVDVNITD
DGSTYTASGSIVAADADGDTLTYFVEKDGTALAGTDGTYVLDGYGVLTLGNDGNYVFT
LNDAGKEKLEKLGLKNDGTPETEHIGTFTVVVQDQYGARAEQTLTLGLTGRNDAPVAA
AVATVGLTLDSSLIPDADWGTGSHAFELATDADANDTLAYAHAGTNAAIEAGTSISGN
FGTLTFSDNAGHLAYEYKLDTSHDNLVRLAEAHAAGQELKDSFGYTVSDNRGGNDSSS
IDVGITFTAGSGNADATENQLIFGNNGSDDLHGGAGNDILSGGAGDDHLYGGAGDDYL
FGGAGNDFLDGGEGNNHLYGGDGNDVLVFHQGDTIDGGAGTDILLVSDKEGEGLNIDD
LFTNTSGIEVVVTGADVNSLTNMGSLADKGITFNADNQVVLDHAKGWHVDTTASSGGH
DVWTNDAGLVVTVKHEDEGDAAKNAMVTLTA"
misc_feature 320636..321025
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature 322328..322585
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature <322793..323029
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature 323252..323497
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature <324197..324412
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature 324641..324916
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature <325157..325360
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature <326570..326788
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
misc_feature 327221..327538
/locus_tag="Ddes_0276"
/note="VCBS repeat; Region: VCBS_repeat; TIGR01965"
/db_xref="CDD:131020"
gene complement(329737..330666)
/locus_tag="Ddes_0277"
/db_xref="GeneID:7283933"
CDS complement(329737..330666)
/locus_tag="Ddes_0277"
/inference="protein motif:PFAM:PF02826"
/note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase
catalytic region; D-isomer specific 2-hydroxyacid
dehydrogenase NAD-binding;
KEGG: dth:DICTH_1665 D-3-phosphoglycerate dehydrogenase"
/codon_start=1
/transl_table=11
/product="NAD-binding D-isomer specific 2-hydroxyacid
dehydrogenase"
/protein_id="YP_002478870.1"
/db_xref="GI:220903558"
/db_xref="InterPro:IPR006139"
/db_xref="InterPro:IPR006140"
/db_xref="GeneID:7283933"
/translation="MKILVTPRSFGKTNPELFDRLTQAGLEVVRNDTGGILSADQMRE
KLAGCQGVILGVDPMSADVLAAAPELRAIAKYGVGLDNIDLEACKQRGIAVSRTVGAN
SNAVADYALTLMLMVARKAGLIDRRCREKDWGKITSIDLYGKTLGIVGLGAIGRCVVK
RAQGFGMKILGHDIAWDEAWASAEGVERADMDRICREADFITLHTVLTDETRNCISTG
RIAMMKKTAVIINTARGGLIDETALLTALQEGRIYGAGLDVFEQEPPADPAWYALDNL
VMGSHCSSSTAGATETMGRMAVDNLLRDLGLSR"
misc_feature complement(329758..330666)
/locus_tag="Ddes_0277"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature complement(329818..330336)
/locus_tag="Ddes_0277"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
misc_feature complement(order(329989..329997,330028..330039,
330100..330105,330112..330123,330127..330150,
330169..330174,330235..330249,330253..330255,
330277..330282))
/locus_tag="Ddes_0277"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature complement(order(330025..330027,330040..330045,
330145..330153,330205..330213,330217..330219))
/locus_tag="Ddes_0277"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene complement(331171..331356)
/locus_tag="Ddes_0278"
/db_xref="GeneID:7283934"
CDS complement(331171..331356)
/locus_tag="Ddes_0278"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478871.1"
/db_xref="GI:220903559"
/db_xref="GeneID:7283934"
/translation="MNDVQMGMSVSISREALDFQASMAAAVINGSISKGQEMQALMDK
NAGLAAQGIGNRLNIEV"
gene 331530..332441
/locus_tag="Ddes_0279"
/db_xref="GeneID:7283935"
CDS 331530..332441
/locus_tag="Ddes_0279"
/EC_number="2.3.1.30"
/inference="protein motif:PRIAM:2.3.1.30"
/note="KEGG: dvu:DVU0662 serine O-acetyltransferase"
/codon_start=1
/transl_table=11
/product="Serine O-acetyltransferase"
/protein_id="YP_002478872.1"
/db_xref="GI:220903560"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:7283935"
/translation="MSELRDLKATAMPLLDSVVERLCHPSSLDAVWHRPAAGAAMPSL
KDLSEVMDRLRAAIFPGYFGPARVWRESMRYHLSANLDTIYRMLCEQIVRGFCFGCEG
EGNPCTSCETDGEKAAIAFMDSLPEIRRLLAGDAKAAYEGDPAATSPGEAIFCYPSMQ
AMLHHRIAHELYKLNVPVIPRIISEMSHSATGIDLHPGASIGEEFFIDHGTGVVIGET
CIIGRNCRLYQGVTLGALSFPKNPDGTLTKGIPRHPILCDNVTVYAGATILGRVTIGK
GAIIGGNVWITQDVPEGGRILQERPRG"
misc_feature 331923..332408
/locus_tag="Ddes_0279"
/note="serine O-acetyltransferase; Region: cysE;
TIGR01172"
/db_xref="CDD:200082"
misc_feature 332100..332408
/locus_tag="Ddes_0279"
/note="Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl group
of L-serine to form O-acetylserine, as the first step of a
two-step biosynthetic pathway in bacteria and plants
leading to the formation of...; Region: LbH_SAT; cd03354"
/db_xref="CDD:100045"
misc_feature order(332103..332105,332109..332111,332154..332156,
332283..332285,332373..332375,332382..332384,
332388..332390)
/locus_tag="Ddes_0279"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100045"
misc_feature order(332151..332156,332211..332216,332259..332264,
332283..332288,332319..332321,332364..332366,
332370..332375,332382..332384,332388..332390)
/locus_tag="Ddes_0279"
/note="active site"
/db_xref="CDD:100045"
misc_feature order(332151..332156,332259..332261,332283..332288)
/locus_tag="Ddes_0279"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100045"
misc_feature order(332211..332216,332259..332264,332319..332321,
332364..332366,332370..332375,332382..332384,
332388..332390)
/locus_tag="Ddes_0279"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100045"
gene 332434..332589
/locus_tag="Ddes_0280"
/db_xref="GeneID:7283936"
CDS 332434..332589
/locus_tag="Ddes_0280"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478873.1"
/db_xref="GI:220903561"
/db_xref="GeneID:7283936"
/translation="MANLLRLITKRRGLCCLVLLCLLAGPALSGCGQGVRVQPKGQAQ
VGVGVGR"
sig_peptide 332434..332523
/locus_tag="Ddes_0280"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.602 at
residue 30"
gene 333003..334313
/locus_tag="Ddes_0281"
/db_xref="GeneID:7283937"
CDS 333003..334313
/locus_tag="Ddes_0281"
/inference="protein motif:PFAM:PF00860"
/note="PFAM: Xanthine/uracil/vitamin C permease;
KEGG: dvl:Dvul_1118 xanthine/uracil/vitamin C permease"
/codon_start=1
/transl_table=11
/product="xanthine/uracil/vitamin C permease"
/protein_id="YP_002478874.1"
/db_xref="GI:220903562"
/db_xref="InterPro:IPR006043"
/db_xref="GeneID:7283937"
/translation="MSVLEKLFNPAARGSTVKREMLAGLTSFMAMCYLIFVVPGMLAD
AGMPKDSAVASTIWVTIIATLVMGLWARFPVGVAPGLGITAFFAYYVCGPAGYSWQTG
LGAVFISGVVFLLLTVTRIRQLIINAVPMDLKYAIVVGIGAFIAFIGMKSCGIVAADP
ATFVTLGNLGNPGTLLSIVGIFLIGGLLALRVRGAMIIGILVITVAGIALGVSPLPKG
PIFSTSLPMPTETFMQMDIKGALHHGLISIIFTLTMVDLFDNMGVLIGLSQKAGFIRE
DGHIENLDKALITDSMATMASAVMGATTATSYLESAAGVAEGGRTGLTAVTIAVLFFL
ALFFSPLVGMVPAYATAPVLIIVGAMMMQEVGRICFKDFTVALPAFLTIISMPLTFNI
ATGFGFGFVSWVGIKALAGRFKDLNLVMLCIALCFIINFALRLP"
misc_feature 333003..334304
/locus_tag="Ddes_0281"
/note="Xanthine/uracil/vitamin C permease [Nucleotide
transport and metabolism]; Region: COG2252"
/db_xref="CDD:32433"
gene 334741..335361
/locus_tag="Ddes_0282"
/db_xref="GeneID:7283938"
CDS 334741..335361
/locus_tag="Ddes_0282"
/EC_number="3.4.21.89"
/inference="protein motif:TFAM:TIGR02227"
/note="KEGG: dvl:Dvul_2260 signal peptidase I;
TIGRFAM: signal peptidase I;
PFAM: peptidase S24 and S26 domain protein"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_002478875.1"
/db_xref="GI:220903563"
/db_xref="InterPro:IPR000223"
/db_xref="InterPro:IPR011056"
/db_xref="GeneID:7283938"
/translation="MTTLLRSSRPKKPLWREYGEALLVALLLALVIRTFVVQAFKIPS
ESMLQTLLVGDHLLASKFAYGIKVPFTNHYIYRGDDPQRGEIIIFEYPNDPSVDYIKR
IVGVPGDIIEVRGKQLYRNGEAVKESYTRFTQPDRVEPVRDNFGPVTVPEGKYFVMGD
NRDNSLDSRFWGFVDRSAIRAKAWRIYWSWGGLDDMRWNRMGKKVE"
sig_peptide 334741..334860
/locus_tag="Ddes_0282"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.966) with cleavage site probability 0.937 at
residue 40"
misc_feature 334834..335313
/locus_tag="Ddes_0282"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature 334852..335289
/locus_tag="Ddes_0282"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(334876..334878,335041..335043)
/locus_tag="Ddes_0282"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
gene 335396..336934
/locus_tag="Ddes_0283"
/db_xref="GeneID:7283939"
CDS 335396..336934
/locus_tag="Ddes_0283"
/inference="protein motif:TFAM:TIGR00368"
/note="KEGG: lip:LI0751 Mg chelatase-related protein;
TIGRFAM: Mg chelatase, subunit ChlI;
PFAM: magnesium chelatase ChlI subunit; ATPase associated
with various cellular activities AAA_5;
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="Mg chelatase subunit ChlI"
/protein_id="YP_002478876.1"
/db_xref="GI:220903564"
/db_xref="InterPro:IPR000523"
/db_xref="InterPro:IPR001208"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004482"
/db_xref="InterPro:IPR006162"
/db_xref="InterPro:IPR011704"
/db_xref="GeneID:7283939"
/translation="MVVRLNSGGVEGVDAYPVELEVDYVRQGLPGFTMVGLAETAVRE
AKDRVFAALRAANFKLPPARVTVNLAPAWRRKSGASYDLPLAMGLLAASGGIPAEGLQ
RFYMAGELSLAGDLRPVSGILPLALLARQRGAAGIIVPPGNGAEAAVVRGLPVYTPRN
IAQCAAFLAGAEPLEPVAEPEEAGLPPAEHTLDFAEVKGQEAAKRALEIAAAGGHNVL
LLGPPGSGKTMLAQRLPTILPPLDFEEALEVTKIYSVANKLPGHGGLVRQRPFRAPHH
TISDVALVGGGAWPRPGEVSLAHRGVLFLDELPEFQKSALESLRQPLEGGTVHIARAS
HSVVFPAACMLVAAMNPCPCGYYGDPTHDCVCRPDQRARYQARISGPMLDRIDVHVEV
PAVPYADLRQSRAGAGSAAMRERVLAARAVQKRRYGAGGPRCNAELSGALLDAHCGLD
APGHDLMEAAVNRLALSARACARVLRMARTIADLAGAKSIDAAHLAEAVSLRVLDRGQ
GGMA"
misc_feature 335435..336913
/locus_tag="Ddes_0283"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature 335456..335824
/locus_tag="Ddes_0283"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 336035..336421
/locus_tag="Ddes_0283"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 336056..336079
/locus_tag="Ddes_0283"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(336059..336082,336311..336313)
/locus_tag="Ddes_0283"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 336299..336316
/locus_tag="Ddes_0283"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 336620..336901
/locus_tag="Ddes_0283"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene complement(337388..338524)
/locus_tag="Ddes_0284"
/db_xref="GeneID:7283940"
CDS complement(337388..338524)
/locus_tag="Ddes_0284"
/EC_number="3.4.16.4"
/inference="protein motif:PRIAM:3.4.16.4"
/note="PFAM: peptidase S11 D-alanyl-D-alanine
carboxypeptidase 1;
KEGG: dvu:DVU2655 D-alanyl-D-alanine carboxypeptidase
family protein"
/codon_start=1
/transl_table=11
/product="serine-type D-Ala-D-Ala carboxypeptidase"
/protein_id="YP_002478877.1"
/db_xref="GI:220903565"
/db_xref="InterPro:IPR001967"
/db_xref="GeneID:7283940"
/translation="MPSRYRHKRFSFLNVFAYPFLFLLLACLLRPGPGQAAPPIPEHG
FLETSSAILYDLDHDAILFEQNADQRIAPASLTKVLSMFLALDSVDQGKLSLDNTVTV
SRAAAGTGGSRMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTPAFVAMMNA
KAQALGMRDSQFRNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHTISHKGR
VTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTRGVEA
FRLLDAGFQVCGNNAASVVAALDCLPPERYNPDMRKTAREARRMYAGSDAAPRKNVSK
AKAGKAPQAKQTAKAKPKKKEAHKAARQKRDSGQAARSGSGRAG"
sig_peptide complement(338414..338524)
/locus_tag="Ddes_0284"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 37"
misc_feature complement(337721..338377)
/locus_tag="Ddes_0284"
/note="D-alanyl-D-alanine carboxypeptidase; Region:
Peptidase_S11; pfam00768"
/db_xref="CDD:201433"
misc_feature complement(<337946..338338)
/locus_tag="Ddes_0284"
/note="Beta-lactamase enzyme family; Region:
Beta-lactamase2; pfam13354"
/db_xref="CDD:205534"
gene complement(338817..340970)
/locus_tag="Ddes_0285"
/db_xref="GeneID:7283941"
CDS complement(338817..340970)
/locus_tag="Ddes_0285"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
Cache domain protein; chemotaxis sensory transducer;
KEGG: dvl:Dvul_1305 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="Cache sensor-containing methyl-accepting
chemotaxis sensory transducer"
/protein_id="YP_002478878.1"
/db_xref="GI:220903566"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004010"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:7283941"
/translation="MNMSVRYKALLLIGVTIIIALISYAILLRNMNDMEERYSDKTRL
AVERLIATEAEKINTYMTVTQDGAAGIAIAGEALWMVRGQDTAGAAQAVKDYLKLNIA
RYPKAVGCGMWYEPYVFSPGEAYFGSYARWENGKVALTMEYNEADYDYHKQDWYTQAI
PAQWDRNKQRPDRVYWSAPYLDEASNTLMITVGGVMYSPHGRIIGMSTLDVSIEDLRK
TVGSIKITPASTAFAVDMRSGLIAAYPADNALLLKPMEKLPFSDAQKLLGSVPPNGQI
RFAASINGQPNTIFYSVSPTGMGLGIAIPDAELYAEVHALAAFNRNTALGAAGALLIF
FVIIGLALNRIIINPILSLSAFSRSVAEGRLDTPVAENYKSEFAVLRNAMVAMLDTLK
NKMQEAERRTEEARVNAQNAEASRHAAEEATAQAQKARSEGMRQAAGSLRTVVAVTES
ASAELAQKINASSQRAESQSRRVAETATAMEQLSAAVLEISHNSGTAANLSEESRAAA
EQGTERVYRVLRDVTTVHRDFQSAYGSVDDLSGKANAIGTIARTIEDIADQTNLLALN
AAIEAARAGDAGRGFAVVADEVRKLAEKTMTATKEVGQSITDIQQAAGSTLVSMDNTK
NLLGQAMQDVQGAEDILRRISALIMDSTDQIRAIATAAEQQSAATEEVNASIVDINRI
SEETATAMQEAAAAVDELGRQTAALHNLTDQLERS"
sig_peptide complement(340893..340970)
/locus_tag="Ddes_0285"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.746) with cleavage site probability 0.727 at
residue 26"
misc_feature complement(340236..340445)
/locus_tag="Ddes_0285"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature complement(339792..339974)
/locus_tag="Ddes_0285"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature complement(order(339798..339803,339810..339815,
339819..339824,339831..339836,339840..339845,
339891..339893,339897..339902,339909..339914,
339918..339923,339930..339935))
/locus_tag="Ddes_0285"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(338829..339554)
/locus_tag="Ddes_0285"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(338931..339530)
/locus_tag="Ddes_0285"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(338934..338939,338946..338948,
338955..338960,338967..338969,338976..338981,
338985..338990,338997..339002,339006..339011,
339018..339020,339027..339032,339039..339041,
339048..339053,339060..339065,339069..339074,
339081..339083,339090..339095,339102..339104,
339111..339116,339153..339158,339165..339170,
339174..339179,339186..339191,339198..339200,
339207..339212,339219..339221,339228..339230,
339240..339242,339261..339263,339270..339272,
339282..339284,339291..339296,339303..339305,
339312..339314,339321..339326,339333..339338,
339345..339347,339354..339359,339363..339365,
339375..339380,339384..339389,339396..339398,
339405..339410,339417..339422,339429..339431,
339438..339443,339450..339452,339459..339464,
339468..339473,339480..339482,339489..339494,
339501..339506))
/locus_tag="Ddes_0285"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(339195..339296)
/locus_tag="Ddes_0285"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(341466..341987)
/locus_tag="Ddes_0286"
/db_xref="GeneID:7283942"
CDS complement(341466..341987)
/locus_tag="Ddes_0286"
/inference="similar to AA sequence:KEGG:LI0207"
/note="KEGG: lip:LI0207 transcriptional regulators"
/codon_start=1
/transl_table=11
/product="putative AsnC family transcriptional regulator"
/protein_id="YP_002478879.1"
/db_xref="GI:220903567"
/db_xref="GeneID:7283942"
/translation="MTTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRP
YAELGQRLGLDEQEVLDRVRGLKARKIIRRLGANFQSAKLGFVSTLCAAKVPQDKMDA
FVAEVNAKPGVTHNYLREHDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKL
FKIRVDFRMDNDS"
misc_feature complement(341613..341921)
/locus_tag="Ddes_0286"
/note="helix_turn_helix ASNC type; Region: HTH_ASNC;
smart00344"
/db_xref="CDD:197668"
misc_feature complement(341787..341921)
/locus_tag="Ddes_0286"
/note="AsnC-type helix-turn-helix domain; Region:
HTH_AsnC-type; pfam13404"
/db_xref="CDD:205582"
gene complement(341987..343231)
/locus_tag="Ddes_0287"
/db_xref="GeneID:7283943"
CDS complement(341987..343231)
/locus_tag="Ddes_0287"
/inference="protein motif:PFAM:PF04055"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: dvl:Dvul_2128 radical SAM domain-containing protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_002478880.1"
/db_xref="GI:220903568"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:7283943"
/translation="MSKHMHHAGGHPGGMPGSAGNPISGHPGQAEDGKHRGHPGGHGM
SAPLRTLEDGSPACRLIAWEVTRSCNLACKHCRAEAHPEPYPGELSTAEAKALIDTFT
EVGKPIIIFTGGDPMIRPDVYELVAYAHSKGLPCAFSPNGTLITPETAQKIKNAGVNR
CSISIDGADAASHDSFRGVPGAFEASMRGIEYLKAAGVPFQINTTVTRNNLTSFKKIF
ELCERIGAAAWHIFLLVPMGRAAGLADQVITAQEYEDVLHWLYDFRKTTKMHLKATCA
PHYYRIMRQRAKEEGVSVTPENFGMDALTRGCLGGTGFCFISHVGQVQPCGYLELDCG
NVRQTPFPKIWRESKHFLQFRDQSCYSGKCGECEYHKVCGGCRARAHSMDGDHMGEEP
LCTYIPAKMRKKGRDGKSGEEK"
misc_feature complement(342038..343054)
/locus_tag="Ddes_0287"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ2; Region: rSAM_NirJ2; TIGR04055"
/db_xref="CDD:188570"
misc_feature complement(342461..343045)
/locus_tag="Ddes_0287"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(342530..342535,342617..342619,
342740..342742,342809..342817,342887..342892,
342896..342898,343001..343009,343013..343015,
343019..343021,343025..343027))
/locus_tag="Ddes_0287"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(342050..342304)
/locus_tag="Ddes_0287"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene complement(343244..344230)
/locus_tag="Ddes_0288"
/db_xref="GeneID:7283944"
CDS complement(343244..344230)
/locus_tag="Ddes_0288"
/EC_number="4.2.1.24"
/inference="protein motif:PRIAM:4.2.1.24"
/note="catalyzes the formation of porphobilinogen from
5-aminolevulinate"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_002478881.1"
/db_xref="GI:220903569"
/db_xref="InterPro:IPR001731"
/db_xref="GeneID:7283944"
/translation="MTPFHRGRRLRATPELRTLVRETAPLLVEDLVQPYFVVETEDSG
FRKEIGSMPGQYQLSLSQMEKQVEQAVDTGLHSVILFGIPATKDEKACGAYADDGIVQ
EAVRLLKRRWPKLFVMTDVCLCEYMSHGHCGILTPEGVVRNDATLPLLAQTAVSHARA
GADMVAPSDMMDGRVAAIREALDQAGFSRLPLMSYAVKYASAYYGPFREAAESAPSSG
DRKSYQMDPANLREALREAYADLEEGADALIVKPAGPYADIIRLVRDHVDVPLCAYQV
SGEYSMIRAAGLNGWIDERAVMLESLMGLKRAGADMIITYFTETLLREKLAR"
misc_feature complement(343262..344209)
/locus_tag="Ddes_0288"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region: ALAD_PBGS;
cd00384"
/db_xref="CDD:88598"
misc_feature complement(order(343310..343312,343319..343321,
343331..343333,343385..343387,343457..343471,
343523..343528,343535..343537,343553..343555,
343562..343564,343622..343630,343715..343720,
343799..343804,344072..344074,344081..344083,
344162..344164,344195..344200,344207..344209))
/locus_tag="Ddes_0288"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88598"
misc_feature complement(order(343283..343285,343400..343402,
343409..343411,343478..343480,343559..343561,
343571..343573,343592..343594,343607..343612,
343619..343621,343637..343639,343727..343729,
343835..343837,343859..343861,343865..343867,
343871..343873))
/locus_tag="Ddes_0288"
/note="active site"
/db_xref="CDD:88598"
misc_feature complement(order(343478..343480,343637..343639))
/locus_tag="Ddes_0288"
/note="Schiff base residues; other site"
/db_xref="CDD:88598"
gene complement(344349..345533)
/locus_tag="Ddes_0289"
/db_xref="GeneID:7283945"
CDS complement(344349..345533)
/locus_tag="Ddes_0289"
/inference="protein motif:PFAM:PF04055"
/note="PFAM: Radical SAM domain protein;
SMART: Elongator protein 3/MiaB/NifB;
KEGG: dvl:Dvul_2126 radical SAM domain-containing protein"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_002478882.1"
/db_xref="GI:220903570"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
/db_xref="GeneID:7283945"
/translation="MIGISKLYCGQVEPSDALRYGRESGKLPSHLLQFSKDKKPVVVW
NMTQRCNLKCVHCYAHAIEVDGTDDINTQQAKAMIDDLAAYGAPVMLFSGGEPLVRKD
LVELASHATSKGMRAVISTNGTLITKEKARELKAVGLSYVGISLDGMEEIHDKFRAVP
GAFRKALEGIANCQAEGLKVGLRLTINKRNAGEIPGIFRLLKDMEIPRACFYHLVYSG
RGSELIKEDLDHAETRQVLDLIMDETRALFDAGKGKEILTVDNHADGPYVWMRLKRED
PKRAEEVFELLQYNEGNSSGRGIGCISWDGKVHADQFWRNHVLGNVLERPFSQIWDDP
SIELLHKLKDKKAHVKGRCAKCRFLNICGGNFRARAEAYYDDIWAQDPACYLTDEEIG
LK"
misc_feature complement(344361..345413)
/locus_tag="Ddes_0289"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ1; Region: rSAM_NirJ1; TIGR04054"
/db_xref="CDD:188569"
misc_feature complement(344814..345404)
/locus_tag="Ddes_0289"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(344886..344891,344979..344981,
345099..345101,345168..345176,345246..345251,
345255..345257,345360..345368,345372..345374,
345378..345380,345384..345386))
/locus_tag="Ddes_0289"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(344382..344633)
/locus_tag="Ddes_0289"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:188600"
gene complement(345544..348222)
/gene="alaS"
/locus_tag="Ddes_0290"
/db_xref="GeneID:7283946"
CDS complement(345544..348222)
/gene="alaS"
/locus_tag="Ddes_0290"
/EC_number="6.1.1.7"
/inference="protein motif:TFAM:TIGR00344"
/note="Catalyzes a two-step reaction, first charging an
alanyl molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="alanyl-tRNA synthetase"
/protein_id="YP_002478883.1"
/db_xref="GI:220903571"
/db_xref="InterPro:IPR002318"
/db_xref="InterPro:IPR003156"
/db_xref="InterPro:IPR012947"
/db_xref="GeneID:7283946"
/translation="MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMV
QFKKLFLGEEKRSYSRATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYF
KREAITWAWDFVTKELELPKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNF
WTMGDTGPCGPCSEIYVDQGADMSCGPDCGIGNCDCDRFLEIWNLVFTQFDQSADGTR
TLLARPNIDTGMGLERMAAVAQGKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDV
DTALRVIADHSRAAAFLVAGGVLPSNENRGYVLRRLIRRALRFATLMGVHEPFMHKVA
RKVTEVMGDAYPELVESADFIDRAVFEEEQRFSLTLKKGLDLLEEELAALKARGITLI
PGDFCFKLYDTYGFPLDIVTDVAEKRGFHADAEGFEKYMQEQRKRARDHQKKGGLLGQ
GEDGQSPFKSLADGGAESRFVGYEGLTAQSPVTILLDAAGQPVDVLGEGESGYAVTEA
TPFYGEGGGQAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAV
DPDERKATARNHTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELA
AVERQVNAAILADLEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPES
VELCGGTHLARTGEAGAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAAL
LKSKPGQLAERVQTLHGEVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDN
VPVKALREVMDDVRSRLSENAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAA
PCGGSGGGRPDMAQAGGNQPEGLAEAFAALKKCIEQ"
misc_feature complement(345547..348222)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="alanyl-tRNA synthetase; Reviewed; Region: alaS;
PRK00252"
/db_xref="CDD:178947"
misc_feature complement(347497..348213)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is responsible
for the attachment of alanine to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
AlaRS_core; cd00673"
/db_xref="CDD:29811"
misc_feature complement(348145..348159)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="motif 1; other site"
/db_xref="CDD:29811"
misc_feature complement(order(347521..347523,347530..347535,
347545..347550,347605..347607,347617..347622,
347935..347943,347947..347949,347953..347955,
348016..348018,348070..348072,348076..348078))
/gene="alaS"
/locus_tag="Ddes_0290"
/note="active site"
/db_xref="CDD:29811"
misc_feature complement(348013..348021)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="motif 2; other site"
/db_xref="CDD:29811"
misc_feature complement(347521..347538)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="motif 3; other site"
/db_xref="CDD:29811"
misc_feature complement(346078..346224)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature complement(345559..345771)
/gene="alaS"
/locus_tag="Ddes_0290"
/note="DHHA1 domain; Region: DHHA1; pfam02272"
/db_xref="CDD:202185"
gene complement(348360..349439)
/gene="recA"
/locus_tag="Ddes_0291"
/db_xref="GeneID:7283947"
CDS complement(348360..349439)
/gene="recA"
/locus_tag="Ddes_0291"
/EC_number="3.6.3.8"
/inference="protein motif:TFAM:TIGR02012"
/note="catalyzes the hydrolysis of ATP in the presence of
single-stranded DNA, the ATP-dependent uptake of
single-stranded DNA by duplex DNA, and the ATP-dependent
hybridization of homologous single-stranded DNAs"
/codon_start=1
/transl_table=11
/product="recombinase A"
/protein_id="YP_002478884.1"
/db_xref="GI:220903572"
/db_xref="InterPro:IPR001553"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013765"
/db_xref="GeneID:7283947"
/translation="MARKPALSPEEARAEALGTALATIERKYGKGAVMKLSDDAHVNI
PVIPTGSIGLDLALGVGGIPRGRISEIFGPESSGKTTLTLHIIAECQRLGGTCAFVDA
EHALDVSYARRLGVNTDELLISQPDYGEQALDIADMLVRSGAVDLVVVDSVAALIPQA
ELEGDMGETQVGGHARLMSHAMRRLTGTIHKSRTSVIFINQIRMKIGVTGYGSPETTT
GGNALKFYSSVRLDIRRIQTLKDKEESFGSRTRVKVVKNKVAPPFRSAVFDILYGLGI
SRAGELLDLGIEAKIIDQSGSWFAFGAEKLGQGREKVRALLDENIDLRNQIEAKVVEF
LGLHPREFTPTAEDIAESQDPVLED"
misc_feature complement(348378..349418)
/gene="recA"
/locus_tag="Ddes_0291"
/note="recombinase A; Provisional; Region: recA; PRK09354"
/db_xref="CDD:181793"
misc_feature complement(348429..349403)
/gene="recA"
/locus_tag="Ddes_0291"
/note="RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction of
the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange; Region: recA; cd00983"
/db_xref="CDD:29984"
misc_feature complement(order(348483..348485,348621..348623,
348765..348767,348777..348779,349083..349088,
349101..349121,349125..349130,349335..349349,
349359..349361,349368..349373,349377..349382))
/gene="recA"
/locus_tag="Ddes_0291"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29984"
misc_feature complement(349200..349223)
/gene="recA"
/locus_tag="Ddes_0291"
/note="Walker A motif; other site"
/db_xref="CDD:29984"
misc_feature complement(order(348621..348632,348696..348698,
348735..348737,348837..348839,348987..348989,
349110..349112,349119..349121,349131..349133,
349197..349217))
/gene="recA"
/locus_tag="Ddes_0291"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29984"
misc_feature complement(348987..349001)
/gene="recA"
/locus_tag="Ddes_0291"
/note="Walker B motif; other site"
/db_xref="CDD:29984"
gene 349866..350996
/locus_tag="Ddes_0292"
/db_xref="GeneID:7283948"
CDS 349866..350996
/locus_tag="Ddes_0292"
/inference="protein motif:PFAM:PF02568"
/note="PFAM: thiamine biosynthesis protein;
KEGG: dvu:DVU1091 hypothetical protein"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein"
/protein_id="YP_002478885.1"
/db_xref="GI:220903573"
/db_xref="InterPro:IPR003720"
/db_xref="GeneID:7283948"
/translation="MSTPDIIALFSGGLDSILAAKVLERQGLAVRCLHFITPFFGSAK
AVPYWHKVYGLDIVSRDVSEAFATMLRQRPEHGFGKVMNPCVDCKILLLREARKYMES
VGAAGLATGEVLGQRPMSQRRDTLHLIMRDAGVGGILLRPLSATHLPPTQMEESGLVD
RTRLLSFSGRGRRDQLDLAAELGITEIPTPGGGCRLTEKENARRYWTVLTLLPEASGE
DFALANLGRQFWHHEDGRHYWLCIGRNSADNDRLAAAVRPGDLLLRLRDLAGPMALAR
SGTEWPRPVLESAAAHVASYAPKAMAHGGAVAVRARQGMEDEAALDLDVLPQRLGEAW
GETPWDDVKAVIRAEARERFAAMPHGRVTDRDAAENQDPSQM"
misc_feature 349866..>350456
/locus_tag="Ddes_0292"
/note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis]; Region:
TrmU; COG0482"
/db_xref="CDD:30830"
misc_feature 349884..350420
/locus_tag="Ddes_0292"
/note="ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the Adenosine
Nucleotide Hydrolysis suoerfamily and predicted to bind to
Adenosine nucleotide; Region: ThiI; cd01712"
/db_xref="CDD:30167"
misc_feature order(349890..349898,349902..349913,349968..349970,
349974..349976)
/locus_tag="Ddes_0292"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30167"
gene 351112..351474
/locus_tag="Ddes_0293"
/db_xref="GeneID:7283949"
CDS 351112..351474
/locus_tag="Ddes_0293"
/inference="protein motif:TFAM:TIGR02420"
/note="TIGRFAM: RNA polymerase-binding protein DksA;
PFAM: zinc finger DksA/TraR C4-type;
KEGG: dvl:Dvul_1083 TraR/DksA family transcriptional
regulator"
/codon_start=1
/transl_table=11
/product="TraR/DksA family transcriptional regulator"
/protein_id="YP_002478886.1"
/db_xref="GI:220903574"
/db_xref="InterPro:IPR000962"
/db_xref="InterPro:IPR012784"
/db_xref="GeneID:7283949"
/translation="MDHKDLEYFRKLLSGMLEEAQQKGDSTIEELTDSNEVFADPADR
ATAESDRAFTLRIRDRERRLIRKIQAALTRIDDGTYGICEDCGDDISIPRLKARPVTR
LCINCKAKQEEDEHLRGD"
misc_feature 351112..351441
/locus_tag="Ddes_0293"
/note="RNA polymerase-binding protein DksA; Region: dksA;
TIGR02420"
/db_xref="CDD:131473"
gene 351846..353579
/locus_tag="Ddes_0294"
/db_xref="GeneID:7283950"
CDS 351846..353579
/locus_tag="Ddes_0294"
/inference="protein motif:PFAM:PF05670"
/note="PFAM: protein of unknown function DUF814;
KEGG: dvu:DVU2149 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478887.1"
/db_xref="GI:220903575"
/db_xref="InterPro:IPR008532"
/db_xref="GeneID:7283950"
/translation="MDAHLFRRFCEDLTPRLTGARIEKLQEPFPGFLVLTWYGGGSKR
QICLRYARKEPFCFSGASRISAGKAPSAQIMRLRKYAAGRRINACVVRFCERRLWLLL
AGGEATQADGPTENTGLPDGVPRLTWLLLDLRDGASLHFLAHDEAPEEEVPVWPEPAQ
LAQARQNWRDWPVLTPALRRTLACLEEPEQWALLEDLRVGGGDVFCYGTGAPESPNVP
ELLPACDAPYMQEASGRAVQSIRAISAWPLALEQQAALLSLDERHSGTSILEEYSADV
LRMVERAGQDLVLSRLAGDKAREAALPLDRRGRKLAKLLDKLIEEERRLRGMTELQAD
ALALQAHLWQWPAEYRAASVLVDEGPHGPAREIRLDPRRSVREEMARFFHTARRGWRG
LEHLVQRRRALEDELAAIHLARRDSLLGMGATPGGEAGAANGLRPGGAAGGGVYAALP
KNVQLFISSDGFALLRGRDARGNLAVRKLAAPHDIWLHAENGPGSHVIIRRAHGGQEV
PARTLDEAGALAANKSWQKDAARAGIQYAEVRHVKPMRNAPAGTVRIDRVLASREVPV
DAALEEKLLPE"
misc_feature 353211..353474
/locus_tag="Ddes_0294"
/note="Domain of unknown function (DUF814); Region:
DUF814; pfam05670"
/db_xref="CDD:203303"
gene complement(353981..355147)
/locus_tag="Ddes_0295"
/db_xref="GeneID:7283951"
CDS complement(353981..355147)
/locus_tag="Ddes_0295"
/inference="protein motif:TFAM:TIGR00843"
/note="TIGRFAM: benzoate transporter;
PFAM: Benzoate membrane transport protein;
Xanthine/uracil/vitamin C permease;
KEGG: pen:PSEEN3859 benzoate membrane transport protein,
MFS superfamily"
/codon_start=1
/transl_table=11
/product="benzoate transporter"
/protein_id="YP_002478888.1"
/db_xref="GI:220903576"
/db_xref="InterPro:IPR004711"
/db_xref="InterPro:IPR006043"
/db_xref="GeneID:7283951"
/translation="MSQLQKDFSTTAVVAGFLAVVVSYAGSAVLIFQAAHLAGLSEQL
TTSWIWAVSIGSGLTGLLLSWRMRIPVITAWSTPGAALLVSMLPGVPFAEAVGAYLAS
AAIITVIGMTGSLDIIMRRIPVAVSSGMFAGILFSFGAKIFTSVQASPLLGLSMLCCF
ILFRRLCPRYAVAAVLVLGVVIASLTGMMHFEAIHFSLAKPVFTAPQWSGATIISIGL
PLALVTLTGQYISGMAVLHASGYPVASNGIMTVTGLASLLFAPFGSHAINLSSLTAAI
CTGKESHEHPSRRYVAGLACGGLYVLIGLFGTTLTSLFAALPPAFIAMLAGLALLSAF
TTGFYGIFRDSDNMEAGIIAFLATASGMELLGLGAPFWGLVFGAVACLVLKKQK"
sig_peptide complement(355070..355147)
/locus_tag="Ddes_0295"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.972) with cleavage site probability 0.736 at
residue 26"
misc_feature complement(353999..355129)
/locus_tag="Ddes_0295"
/note="Benzoate membrane transport protein; Region: BenE;
pfam03594"
/db_xref="CDD:112412"
misc_feature complement(353996..355111)
/locus_tag="Ddes_0295"
/note="benzoate transporter; Region: benE; TIGR00843"
/db_xref="CDD:129923"
gene complement(355524..356735)
/locus_tag="Ddes_0296"
/db_xref="GeneID:7283952"
CDS complement(355524..356735)
/locus_tag="Ddes_0296"
/inference="protein motif:TFAM:TIGR00016"
/note="AckA utilizes acetate and can acetylate CheY which
increases signal strength during flagellar rotation;
utilizes magnesium and ATP; also involved in conversion of
acetate to aceyl-CoA"
/codon_start=1
/transl_table=11
/product="acetate kinase"
/protein_id="YP_002478889.1"
/db_xref="GI:220903577"
/db_xref="InterPro:IPR000890"
/db_xref="InterPro:IPR004372"
/db_xref="GeneID:7283952"
/translation="MKILVINAGSSSCKYQLLEMDTHAVLCSGLAERIGQDEGRLTHK
IAPDTDKEEKIVQTAHFPTHVQAMEMVIALLTDAEKGVIKDKSEIAGIGHRVLHGGEA
VSDPVLVDERVKGIVRECAVLGPLHNPANLMGIEVAEKLFPGVPNVAVFDTEFGMGMP
KEAFMYALPYELYEDLRIRRYGFHGTSHKYIAGATAKYLGKPLSELRSITMHLGNGSS
MSCVRNGKCFDTSMGLTPLEGLIMGTRCGSIDPAIVPFVMEKKGLTPEQVDTLMNKKS
GLLGLCGHTDMRDVHAEVEKGNERAALALKMLVRSIKKTLGSYYFLLDGKVDALVFTA
GIGENDDIVRAEVCAGLENLGIKIDAKENGTRKAGARAISTPDSSIPVLIIPTNEELQ
IAMATVEVLGK"
misc_feature complement(355527..356735)
/locus_tag="Ddes_0296"
/note="acetate kinase A/propionate kinase 2; Reviewed;
Region: PRK00180"
/db_xref="CDD:178918"
misc_feature complement(355554..356735)
/locus_tag="Ddes_0296"
/note="acetate kinase; Region: ackA; TIGR00016"
/db_xref="CDD:161665"
gene complement(357004..359112)
/locus_tag="Ddes_0297"
/db_xref="GeneID:7283953"
CDS complement(357004..359112)
/locus_tag="Ddes_0297"
/inference="protein motif:TFAM:TIGR00651"
/note="catalyzes the synthesis of acetylphosphate or
propionylphosphate from acetyl-CoA or propionyl-CoA and
inorganic phosphate; when using propionyl-CoA the enzyme
is functioning in the anaerobic pathway catabolizing
threonine to propionate"
/codon_start=1
/transl_table=11
/product="phosphate acetyltransferase"
/protein_id="YP_002478890.1"
/db_xref="GI:220903578"
/db_xref="InterPro:IPR002505"
/db_xref="InterPro:IPR004614"
/db_xref="InterPro:IPR010766"
/db_xref="GeneID:7283953"
/translation="MYNGLYITATGPMTGKSAIALGAMQLLSRSMRKVAFFRPIINEP
LWDDRDPDINLMLEYFKINSDYADTFAYTQREARQIINQGSRNLLMENIIQKYKKLLE
TYDFVLCVGTDFLGKDPVFEFELNAEIAANLGTPVILVTSGQKSTAEDIRESLQITMD
SLAPYSLDVVATIINRRNLTQTELDELRTHFSTEDRKALIYSVPNEPTIGQPTMGDVK
KGLDAEVLFGEDRLDALVDDYLIAAMHVNNVLHYIAKDQLIVTPGDRADVLLAAIASR
LSSSTPDIAGVLLTGGIRPAKEVCEFIQGWTASPLPILLTKGHTYNTMLALQELIAPI
EPGNLRKINTVLGLFEQHVNGKDIASRIVSKRSSRITPMMFEFELIERAKANKMRIVL
AEGTEERILRATDILLRRGVADITLLGDVDEIRTKASTLGLDLEKATLIDPVNSPKFD
EYANTYYELRKKKGITPEQARDTMADSTYYATMMVKQDDADGMVSGAVNTTAHTIRPA
FEFVKTKPGFSVVSSVFLMCLKDRVLVFGDCAVNPNPTAQQLAEIAIASAHTAEVFGI
EPRVAMLSYSTGTSGKGADVDIVVEATKIAKEMAPGLALEGPLQYDAAIDPSVAKTKM
PDSKVAGKATVFIFPDLNTGNNTYKAVQRAAGAVAIGPVLQGLNKPVNDLSRGCTVPD
IVNTVAITAVQAAAEKAAGR"
misc_feature complement(357028..359112)
/locus_tag="Ddes_0297"
/note="phosphate acetyltransferase; Reviewed; Region:
PRK05632"
/db_xref="CDD:180175"
misc_feature complement(358492..359112)
/locus_tag="Ddes_0297"
/note="Dethiobiotin synthetase [Coenzyme metabolism];
Region: BioD; COG0132"
/db_xref="CDD:30481"
misc_feature complement(358123..358467)
/locus_tag="Ddes_0297"
/note="DRTGG domain; Region: DRTGG; pfam07085"
/db_xref="CDD:203577"
misc_feature complement(357022..357996)
/locus_tag="Ddes_0297"
/note="phosphotransacetylase; Reviewed; Region: eutD;
PRK09653"
/db_xref="CDD:182020"
gene complement(359280..362816)
/locus_tag="Ddes_0298"
/db_xref="GeneID:7283954"
CDS complement(359280..362816)
/locus_tag="Ddes_0298"
/inference="protein motif:PFAM:PF01855"
/note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain
protein; pyruvate ferredoxin/flavodoxin oxidoreductase;
pyruvate flavodoxin/ferredoxin oxidoreductase domain
protein; 4Fe-4S ferredoxin, iron-sulphur binding,
conserved site;
KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin
oxidoreductase domain-containing protein"
/codon_start=1
/transl_table=11
/product="pyruvate flavodoxin/ferredoxin oxidoreductase
domain-containing protein"
/protein_id="YP_002478891.1"
/db_xref="GI:220903579"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR002869"
/db_xref="InterPro:IPR002880"
/db_xref="InterPro:IPR011895"
/db_xref="InterPro:IPR017900"
/db_xref="GeneID:7283954"
/translation="MAHMKTMDGNNATTHIAYALSETAAIYPITPSSVMGEVMDQMAA
KGMKNLLGQKVIVREMQSEAGAAGAVHGMLSAGALTSTYTASQGLLLMIPNMYKIAGE
LLPGVFHVSARALASHALSIFGDHQDVMAARQTGFCFLASASVQECMDLALVAHLSSI
DSSLPFCHFFDGFRTSHEVQKIEVIDYEDIRGLVNWDKVDEFRATAMNPEHPHIRGTA
QNPDIYFQNREASNLFYDAVPGIVLENMKKVESITGRKYRLFDYVGHPEADRVIVSMG
SSCEVAEETVNYLNSQGQRVGLVKVRLYRPFSAEHLLRALPATTTCITVLDRTKESGA
LGDPLYQDVCTAFLEKGEAPTIVAGRYGLGSKDFTPGMAKAVYDNMLGLQPKNHFTVG
ITDDVTNLSLEVEEEIDTVPAGTVQCKFFGLGADGTVGANKQAIKIIGDNTDLYAQAY
FAYDSKKSGGFTVSHLRFGKAPITSSYLITSADYVACHKSAYVTQYDILEGIKEGGTF
VLNSNWSLADLEKHLPASMKRTIARKKLKFYNVDAVKVAQEVGLGGRINMIMQTAFFK
LANVLDFDKAVALLKESIKKTYGSKGDKIVNMNIAAVDKGMDALEEIKYPATWANATE
GAEVCHCDDDDYIRSVVRPILAQQGDKLPVSAMDPAGFMPLGTAACEKRGVAIAIPEW
QVENCIQCCQCSFVCPHAAIRPVLATEEELEGAPAAFATKDAMGKELKGLKFRIQVYP
EDCLGCGSCADVCPAKNKALVMKPLETQMDDQKANLAFAEAHVSLKDKLLARDTVKGS
QLQQPLHEFSGACAGCGETPYVKVLTQLFGERMIVANATGCSSIWGASSPTTPYCTNK
DGFGPAWGNSLFEDAAEYGCGMGLAYDQRRNLLAMKIEEALKEEGISSELKEAMEGWL
ANKDDAEGSRKYGDMVLANLDSFESPLAHEIWHMDDLFTKKSVWIFGGDGWGYDIGYG
GLDHVLATGDDINILLMDTEVYSNTGGQSSKATPLGAVAQFAAAGKRTGKKDLGRMAM
TYGYVYVASISMGADKQQTLKAFREAEAYKGPSLIIAYAPCINQGLRKGMGKSQEESK
LAVQTGYWPLYRYHPELAKEKKNPFQLDSKAPTVDIQEFLGGETRFASLEKTDPEASK
QLRAELADAYAERYALLKQLADLPYPDANETK"
misc_feature complement(359313..362807)
/locus_tag="Ddes_0298"
/note="pyruvate:ferredoxin (flavodoxin) oxidoreductase,
homodimeric; Region: pyruv_ox_red; TIGR02176"
/db_xref="CDD:131231"
misc_feature complement(362301..362792)
/locus_tag="Ddes_0298"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature complement(order(362415..362420,362469..362474,
362511..362513,362523..362525,362532..362534,
362583..362585,362589..362591,362598..362606,
362610..362615,362634..362645,362706..362708,
362715..362717,362727..362729,362745..362750))
/locus_tag="Ddes_0298"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(362523..362525,362532..362534,
362583..362585,362589..362591,362598..362606,
362610..362615,362634..362645,362706..362711,
362727..362729,362733..362738,362745..362750))
/locus_tag="Ddes_0298"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(362628..362630,362733..362735))
/locus_tag="Ddes_0298"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(362478..362480,362727..362729))
/locus_tag="Ddes_0298"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
misc_feature complement(361656..362024)
/locus_tag="Ddes_0298"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
misc_feature complement(360954..361574)
/locus_tag="Ddes_0298"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, gamma subunit
[Energy production and conversion]; Region: PorG; COG1014"
/db_xref="CDD:31218"
misc_feature complement(360786..360923)
/locus_tag="Ddes_0298"
/note="Domain of unknown function; Region: EKR;
smart00890"
/db_xref="CDD:197958"
misc_feature complement(<360291..>360806)
/locus_tag="Ddes_0298"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature complement(359316..360410)
/locus_tag="Ddes_0298"
/note="Thiamine pyrophosphate (TPP family), PFOR_PNO
subfamily, TPP-binding module; composed of proteins
similar to the single subunit pyruvate ferredoxin
oxidoreductase (PFOR) of Desulfovibrio Africanus, present
in bacteria and amitochondriate eukaryotes. This...;
Region: TPP_PFOR_PNO; cd03377"
/db_xref="CDD:48186"
misc_feature complement(order(359826..359834,359838..359840,
359844..359846,359922..359933,360210..360215,
360300..360302,360369..360371))
/locus_tag="Ddes_0298"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48186"
misc_feature complement(order(359331..359333,359385..359387,
359394..359396,359400..359402,359409..359411,
359421..359423,359571..359582,359598..359603,
359724..359726,359733..359738,359748..359750,
359760..359762,359772..359774,359781..359783,
359787..359789,359808..359810,359823..359828,
359871..359873,359889..359894,359904..359906,
359952..359954,359967..359969,360144..360146,
360153..360155,360162..360167,360174..360179,
360183..360188,360195..360200,360207..360209,
360216..360233,360237..360245,360267..360269,
360282..360284,360324..360332))
/locus_tag="Ddes_0298"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48186"
gene 363273..363386
/locus_tag="Ddes_0299"
/db_xref="GeneID:7283955"
CDS 363273..363386
/locus_tag="Ddes_0299"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478892.1"
/db_xref="GI:220903580"
/db_xref="GeneID:7283955"
/translation="MVPARFAVQTVTHILVYCSPCEQLFTAIAGKNIGEAE"
gene 363705..365462
/locus_tag="Ddes_0300"
/db_xref="GeneID:7283956"
CDS 363705..365462
/locus_tag="Ddes_0300"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
chemotaxis sensory transducer;
KEGG: lip:LI0843 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478893.1"
/db_xref="GI:220903581"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR004090"
/db_xref="GeneID:7283956"
/translation="MFWKNLSIGKKLCFGFGISLAGMICFAVVAWYASNLVMTMADSA
LQKQSNALVFAMREADHLHWKERVSSFVAMPSADGKLDVQKDGHKCLFGQWFYNGGRE
EVEAILPGTSSYFKSMEADHLDLHRSASDIERLVQAGDLQGARAHFNAVTLAKSSAVV
ETLAQLRKMMLHAAEADRESYKQIMAREEYVVVALLLVVLAGMLVSGVAITRSIRNPL
RGLVDKSAEVVAGNLDVDLRLRRQDEIGALSRALGALLDNLKLKLAENEKKSEEAQAS
AEHTRNALKDAEEKEARIASLLGDMNAIATQADVIAADLADHSATLAQRVETVYRGSE
DQHDLMRSSLDDLEQLASAAGEIAVSAEHSAHGARSSREHAGSGVDVVTRCAQAISRV
NDLAAKQNGQVAELGEMAQGITGIMSVITDIADQTNLLALNAAIEAARAGEAGRGFSV
VADEVRKLAEKTVTATQAVGAKITGIQESIHASVAFMGQTSEAVHESNDLAQQSGAAL
SQILDLAAANVDSAAGMAVAAQQQSDTVVHVAQGMKNVQDIAESSRAAMSEADRQVRA
VAKMAGELRELIDRLKSRA"
sig_peptide 363705..363797
/locus_tag="Ddes_0300"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.547 at
residue 31"
misc_feature 363876..364109
/locus_tag="Ddes_0300"
/note="MCP-signal associated domain; Region:
MCPsignal_assoc; pfam13682"
/db_xref="CDD:205858"
misc_feature <364332..364454
/locus_tag="Ddes_0300"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature order(364344..364349,364356..364361,364365..364370,
364377..364382,364386..364388,364434..364439,
364443..364448)
/locus_tag="Ddes_0300"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 364665..365450
/locus_tag="Ddes_0300"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 364746..365345
/locus_tag="Ddes_0300"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(364770..364775,364782..364787,364794..364796,
364803..364808,364812..364817,364824..364826,
364833..364838,364845..364847,364854..364859,
364866..364871,364878..364880,364887..364892,
364896..364901,364911..364913,364917..364922,
364929..364931,364938..364943,364950..364955,
364962..364964,364971..364973,364980..364985,
364992..364994,365004..365006,365013..365015,
365034..365036,365046..365048,365055..365057,
365064..365069,365076..365078,365085..365090,
365097..365102,365106..365111,365118..365123,
365160..365165,365172..365174,365181..365186,
365193..365195,365202..365207,365211..365216,
365223..365228,365235..365237,365244..365249,
365256..365258,365265..365270,365274..365279,
365286..365291,365295..365300,365307..365309,
365316..365321,365328..365330,365337..365342)
/locus_tag="Ddes_0300"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 364980..365081
/locus_tag="Ddes_0300"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 365738..367945
/locus_tag="Ddes_0301"
/db_xref="GeneID:7283957"
CDS 365738..367945
/locus_tag="Ddes_0301"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: histidine kinase HAMP region domain protein;
Cache domain protein; chemotaxis sensory transducer;
KEGG: lip:LIC103 methyl-accepting chemotaxis protein"
/codon_start=1
/transl_table=11
/product="Cache sensor-containing methyl-accepting
chemotaxis sensory transducer"
/protein_id="YP_002478894.1"
/db_xref="GI:220903582"
/db_xref="InterPro:IPR003660"
/db_xref="InterPro:IPR004010"
/db_xref="InterPro:IPR004089"
/db_xref="InterPro:IPR005829"
/db_xref="GeneID:7283957"
/translation="MLRVRLRLEKETVALLTNGVFMFAWYRSLRMTPKIVIPVALALV
VCLGLLTWQIQTRSSAAIEDIARRELAALGGAEGNSMSRFLNMAVDEASALAAALGQS
VAQNEAPTRQGVIAMIKGMLMGNADIFGVGIIWEPGLFDNRDMLYAGAPGSDGKGRFM
PYLSRGAELVDLGEQVDQPYYVIPRKTRQTYVSDPIPFKVSGQDVLMSTVACPILRGN
DLLGVVLVDISLARLQQMVAAVSLYGSGYASLVSEKGDILAHREESLVGKSIFDLGVV
RRKGAVTEAFTAGKSYMEDVSDAQGVLLRYFHPVDFRGGSQHWYLSVTVPQREVLAQA
RDISRITVIISAITLLVLLGISYLVIRSALRPVNYLAETAGIIAGGKLEQNIEDSRFG
GEMKVLSTALKKMIASLLEGISRAEALTGAAREESEKARLAMMEAEDARRAAESARRD
GMLAAAGQLEEVVSVLSSASTELSAQIEQSDRGAADSAQRLAEAATAMNEMNATVQEV
ARNASQASEASAETRRRALAGAHIVEQSLQSIRQVHEVSGALRQDMALLNTHAQDISR
IMSVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMSSTTDVGNAI
RAIQESTAKSMAGMDEAVRQVEQATDYAGQSGQALSEIVGTVEATADQVNAIATASEE
QSAASEEINQTIVQINSMSRQTAEAMAEAARAVTDLAAQAQALDSLIDNMKRG"
misc_feature 366326..366553
/locus_tag="Ddes_0301"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature 366761..366970
/locus_tag="Ddes_0301"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature 367322..367765
/locus_tag="Ddes_0301"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(367322..367324,367331..367333,367340..367345,
367352..367357,367364..367366,367373..367378,
367382..367387,367397..367399,367403..367408,
367415..367417,367424..367429,367436..367441,
367448..367450,367457..367459,367466..367471,
367478..367480,367490..367492,367499..367501,
367520..367522,367532..367534,367541..367543,
367550..367555,367562..367564,367571..367576,
367583..367588,367592..367597,367604..367609,
367646..367651,367658..367660,367667..367672,
367679..367681,367688..367693,367697..367702,
367709..367714,367721..367723,367730..367735,
367742..367744,367751..367756,367760..367765)
/locus_tag="Ddes_0301"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 367466..367567
/locus_tag="Ddes_0301"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(368280..368936)
/locus_tag="Ddes_0302"
/db_xref="GeneID:7283958"
CDS complement(368280..368936)
/locus_tag="Ddes_0302"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: lpf:plpl0013 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478895.1"
/db_xref="GI:220903583"
/db_xref="GeneID:7283958"
/translation="MTLKGLRFIALLLCLSLVPLAACVRQAADPDKLEVLRSGKLQEA
QDDDTIADTVYVSVRDNTNRVFGLRAQTESWLQRSGFTIVGNPSEAGYIVQLTVLSAG
NTDPAHLRQMVDAGYDTPSALKGSGGATVMADVLLVQRRVPSAQRPSRAKLKNISSRN
ALSNSQMRIAVLLPGQVRMDAGAPTLFTETLAREIGTAIHAANKNADQAAPAGTGAAQ
"
sig_peptide complement(368853..368936)
/locus_tag="Ddes_0302"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.986 at
residue 28"
misc_feature complement(<368547..368780)
/locus_tag="Ddes_0302"
/note="Enterobacterial TraT complement resistance protein;
Region: TraT; pfam05818"
/db_xref="CDD:147783"
gene complement(369381..370100)
/locus_tag="Ddes_0303"
/db_xref="GeneID:7283959"
CDS complement(369381..370100)
/locus_tag="Ddes_0303"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: fal:FRAAL6470 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478896.1"
/db_xref="GI:220903584"
/db_xref="GeneID:7283959"
/translation="MRICPIPYRLVAAICLTMLCLLAAGCSARHNTGPDAPGSSDFPP
GSPADPRSNQAEARPGPLPPIKANPGQSVFVDVSGGSATFNADLQSMLTAYLQSEREL
VPADSAKGSDLLLRVAVDEVVPLGSRSTPPDAGRALGHTATGAMLGALVGGATGGGRG
AAWGVGGGLLLGLGVSMLDGGTSNIWGMRARVGAGRNGKQPQEMYTVSVSAEGAGMGR
DDILPALEDKLSSEIVKAVKP"
sig_peptide complement(370014..370100)
/locus_tag="Ddes_0303"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.981) with cleavage site probability 0.586 at
residue 29"
gene 370412..372658
/locus_tag="Ddes_0304"
/db_xref="GeneID:7283960"
CDS 370412..372658
/locus_tag="Ddes_0304"
/EC_number="5.99.1.2"
/inference="protein motif:TFAM:TIGR01051"
/note="KEGG: dvu:DVU3389 DNA topoisomerase I;
TIGRFAM: DNA topoisomerase I;
PFAM: TOPRIM domain protein; DNA topoisomerase type IA
central domain protein; DNA topoisomerase type IA zn
finger domain protein;
SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase
I DNA-binding; Toprim sub domain protein"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase I"
/protein_id="YP_002478897.1"
/db_xref="GI:220903585"
/db_xref="InterPro:IPR000380"
/db_xref="InterPro:IPR003601"
/db_xref="InterPro:IPR003602"
/db_xref="InterPro:IPR005733"
/db_xref="InterPro:IPR006154"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR013497"
/db_xref="InterPro:IPR013498"
/db_xref="GeneID:7283960"
/translation="MGKQLIIVESPAKVKTIKKFLGPAYMVQASVGHVRDLPAKTLGV
DEEHDFAPHYEVIENKKNVVSDLRAAASKAETVYLAPDPDREGEAIAWHVAELIRDKA
KDIKRIQFNEITAKAVKEALAHPRELNADLFDAQQARRILDRLVGYKISPLLWKTIKR
GISAGRVQSVALRLIVEREEEREVFRPEEYWLFKALLSGEVPPPFKADLLKVNGKKAV
IGNAEEAQALEAALKGQPFVVENVEQKERERAPQPPFITSTLQQAANQRLSYSAKRTM
NIAQRLYEGVELGDRGLTALITYMRTDSTRIADEARDAAKKFIGEHFGKDYLPKRARV
YKTKGSAQDAHEAIRPVDVSITPDEVKQHLPPDQYNLYRLIWSRFVASQMAGARFHDT
TVTIACAHSQWRAKGERLLFPGFMAALPRAGEDADSDLPPVEVGQTLKLEKMDKEQKF
TQPPPRYSEASLVRELEERGIGRPSTYAAIISTLQDREYVSLAERHFVPTDLGRVVCG
QLTEHFSRLMDVGFTAQMEEGLDKVAEGKEHWVELLRAFADDFNPTLTAAAKNMQSVK
GGIPADLACPECGKPLMIKFGKAGAFLACSGYPDCNFTSNFSRNEEGKVEAVAAEKPK
YEKVGQCPKCGRDLVIKKARTGSSFIACTGYPECRHAAPLSTGVPCPRCEKGQLVEKS
TKRGKIFYSCDQYPQCDFALWDRPVPGPCPRCNSPYLVEKKSRDGLKVICPVKGCGYV
KEEDHEQE"
misc_feature 370412..372409
/locus_tag="Ddes_0304"
/note="DNA topoisomerase I; Validated; Region: PRK06599"
/db_xref="CDD:180637"
misc_feature 370418..370786
/locus_tag="Ddes_0304"
/note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase
(TORPIM) domain found in members of the type IA family of
DNA topoisomerases (Topo IA) similar to Escherichia coli
DNA topoisomerase I. Type IA DNA topoisomerases remove
(relax) negative supercoils in the...; Region:
TOPRIM_TopoIA_TopoI; cd03363"
/db_xref="CDD:173783"
misc_feature order(370436..370441,370448..370450,370655..370657,
370661..370663,370667..370669)
/locus_tag="Ddes_0304"
/note="active site"
/db_xref="CDD:173783"
misc_feature order(370457..370459,370658..370660,370664..370666,
370685..370690,370694..370699)
/locus_tag="Ddes_0304"
/note="interdomain interaction site; other site"
/db_xref="CDD:173783"
misc_feature order(370655..370657,370661..370663)
/locus_tag="Ddes_0304"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173783"
misc_feature 370664..370666
/locus_tag="Ddes_0304"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173783"
misc_feature 370802..372067
/locus_tag="Ddes_0304"
/note="DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA topoisomerase
III and eubacterial and archael reverse gyrases.
Topoisomerases clevage single or double stranded DNA...;
Region: TOP1Ac; cd00186"
/db_xref="CDD:73184"
misc_feature order(370802..370882,370895..370957)
/locus_tag="Ddes_0304"
/note="domain I; other site"
/db_xref="CDD:73184"
misc_feature order(370826..370831,370838..370840,370850..370852,
370862..370864,371249..371251,371261..371263,
371312..371314,371834..371839,371846..371851,
371855..371857,371867..371872)
/locus_tag="Ddes_0304"
/note="DNA binding groove [nucleotide binding]"
/db_xref="CDD:73184"
misc_feature order(370928..370930,370940..370942,371942..371944)
/locus_tag="Ddes_0304"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73184"
misc_feature order(370970..370984,371108..371161,371564..371608,
371612..371668,371735..371767)
/locus_tag="Ddes_0304"
/note="domain II; other site"
/db_xref="CDD:73184"
misc_feature order(371162..371182,371186..371269,371297..371380,
371441..371467,371501..371563)
/locus_tag="Ddes_0304"
/note="domain III; other site"
/db_xref="CDD:73184"
misc_feature order(371195..371197,371207..371215,371444..371446,
371519..371521,371528..371530,371540..371542,
371828..371830,371834..371836,371900..371902)
/locus_tag="Ddes_0304"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:73184"
misc_feature order(371306..371308,371312..371314,371444..371446)
/locus_tag="Ddes_0304"
/note="catalytic site [active]"
/db_xref="CDD:73184"
misc_feature order(371768..371890,371900..371944,371960..372067)
/locus_tag="Ddes_0304"
/note="domain IV; other site"
/db_xref="CDD:73184"
misc_feature 372134..372241
/locus_tag="Ddes_0304"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 372296..372637
/locus_tag="Ddes_0304"
/note="Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair]; Region:
TopA; COG0551"
/db_xref="CDD:30897"
misc_feature 372296..372403
/locus_tag="Ddes_0304"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
misc_feature 372410..372529
/locus_tag="Ddes_0304"
/note="Topoisomerase DNA binding C4 zinc finger; Region:
zf-C4_Topoisom; pfam01396"
/db_xref="CDD:110400"
gene 372645..373793
/locus_tag="Ddes_0305"
/db_xref="GeneID:7283961"
CDS 372645..373793
/locus_tag="Ddes_0305"
/inference="protein motif:PFAM:PF02625"
/note="PFAM: protein of unknown function DUF182;
KEGG: pth:PTH_0686 xanthine and CO dehydrogenases
maturation factor"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478898.1"
/db_xref="GI:220903586"
/db_xref="InterPro:IPR003777"
/db_xref="GeneID:7283961"
/translation="MSRSDEPGGGAVSTGPAGACSADAAGSGGMSAPWPDTLEARVAR
LLGEGESVVLVTVISRTGSAPRDAGTRALYTQAGPEGTVGGGLLEARAMEAAAQSLFM
GRSARVSCDLSGFTPDSDMICGGGMEVLCEVLLPEQAGLFSLAALALSEGVGGVWVVD
VSHETPSRSLCLDSLPQGGELAAGASLDTAAARELAARRKGRAGLVEKGESSVYVEPL
AAPTILLLCGGGHVSLEVARLAHACGFVVDVADDRPEFSNPQRFPMARRCYVLPEYEN
LVNACGIGRHHYVAIITRGHGFDRETLAQALTSHAQYIGMIGSRTKRDQIYALLRAQG
VPAAELAAVCCPIGLTIEAETPQQIAVSIVAELLAAQAGTLKRLRFEE"
sig_peptide 372645..372719
/locus_tag="Ddes_0305"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.628) with cleavage site probability 0.396 at
residue 25"
misc_feature 372771..372980
/locus_tag="Ddes_0305"
/note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625"
/db_xref="CDD:202317"
misc_feature 373314..373745
/locus_tag="Ddes_0305"
/note="XdhC Rossmann domain; Region: XdhC_C; pfam13478"
/db_xref="CDD:205656"
gene 374054..374692
/locus_tag="Ddes_0306"
/db_xref="GeneID:7283962"
CDS 374054..374692
/locus_tag="Ddes_0306"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478899.1"
/db_xref="GI:220903587"
/db_xref="GeneID:7283962"
/translation="MSFTIVAALIVFLVFIYVDARRRTAQHLQCIAEEKSSVATASGM
TASVGVFYPDVRTAVVMGASEDTGACYYRVLREGKVINRSKINLANIVRVDLLLNGSP
RDLPLESQQATSFLKATEIAGKGISTFSTAELRALQKAALRLVFVDGNGAEKMLEITV
LRMGDERHRFKRLELLKDGIWWYAFLNSAARNARLWHDEHELAEHDGNIGQE"
gene 374918..376033
/locus_tag="Ddes_0307"
/db_xref="GeneID:7283963"
CDS 374918..376033
/locus_tag="Ddes_0307"
/inference="protein motif:TFAM:TIGR01730"
/note="TIGRFAM: efflux transporter, RND family, MFP
subunit;
PFAM: secretion protein HlyD family protein;
KEGG: lip:LI0993 multidrug efflux membrane permease"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_002478900.1"
/db_xref="GI:220903588"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:7283963"
/translation="MTSRQLFSLPLALALCLALVACDSEKKAQQGAMHLPVAIFDVVA
RDEPWPAEYQAQASGSRAVEVRARVEAIIEKRLYEEGDYVEQGQLLFQLERDHYEALM
QQAQAQFTNAEREWRRVRPLYEKNAVSQKERDNALAAYESAKAAMRQAKINLDYCQVT
APVSGYSSKENYTPGNLVGNNSLLTYVNQTDPMYIDFSIAAPERMTRQNLAAEGRLAL
PAEGRYKARLRLLDGSMYKGEGEVTFIDSQVQPSTGVIKARAVFANADRSIMPGQYVR
LYMDGDILKNAVLVPQKCVLLTQKGSLVMGVDKDDKVYPIPVVVGVSVGDKYLVLEGL
KGGERIISEGIIKARPGTQVSIMPSGGEQPRDGAAKK"
sig_peptide 374918..374983
/locus_tag="Ddes_0307"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.994 at
residue 22"
misc_feature 375026..375985
/locus_tag="Ddes_0307"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 375104..375247
/locus_tag="Ddes_0307"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 375389..375733
/locus_tag="Ddes_0307"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 376040..379243
/locus_tag="Ddes_0308"
/db_xref="GeneID:7283964"
CDS 376040..379243
/locus_tag="Ddes_0308"
/inference="protein motif:TFAM:TIGR00915"
/note="TIGRFAM: transporter, hydrophobe/amphiphile
efflux-1 (HAE1) family;
PFAM: acriflavin resistance protein;
KEGG: dvl:Dvul_2900 hydrophobe/amphiphile efflux-1 (HAE1)
family protein"
/codon_start=1
/transl_table=11
/product="hydrophobe/amphiphile efflux-1 (HAE1) family
transporter"
/protein_id="YP_002478901.1"
/db_xref="GI:220903589"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR004764"
/db_xref="GeneID:7283964"
/translation="MAVSTKPNFFLRRPILSAVISIVITLVGALAMRALPVAQYPDLV
PPTVNVSVVYPGASAETIASTVLAPLEVNINGVENMLYMTSTAASGSGSGSINVYFSL
GTDPDMALVNVNNKVNLAQTVLPEAVRRQGVSVLKRSPAMLLVFSYFSPDGRYDQVFI
NNWAQINVVDALKRVEGVGDVTIFGSMDYAMRIWLQPDKLAKYGVSVNEVAAAIQEQN
SQYAPGRLGEMPSPDSTQLTWQIDTQGRLVTPEEFGEIIVRSGPDSAMLRLKDVARVE
LGGKDYSVTSRYNGMVARMGAVYLLPGANAIATGDRVLDKLAEIGLTMPDGLDYTILV
NTNDFVLESIREVVSTLVEAMILVFIVVYVFLQSWRATIIPCVAVPVSIIGTFAGLYA
FGYTINTLTLFAMVLSIGIVVDDAIVVLENVERIMTTEHLPPKEATAKAMNEVTAPIV
AIVLVLCAVFIPVSFMGGLAGQMYKQFAITISVSVVLSGVVALTLTPALCALLLKPHD
HSYKPPKPFAWFNRFFDSVTTNYVNIVNYLKASSLRALSLFAVMILICVWLFRVVPGG
LVPNEDQGYILGMAILDDGASQHRTTAVNKVLNDFLLSNPAVQSMGTLSGLDITSISV
KSNYGTFFALLKPWGERKKTEMSSDAVLQTVGAVTLMQPEAVVMGFAPPPISGMSTTG
GFEGYIQMRGTGSLQDLENETNRLVQEVMAVDADGKRKYPAIGMLRNLFSTGSPQLYA
NLDRDRCKDMGVQISDVFTAMGGTFGGAYVNDFNYMGRTFQVRLQSEAQYRVLPEDLG
NVYVPNNKGEMIPLTAVMTLERRTAPQVVERYNVFPAAHVMGAPAPGFSSGQALDQME
AAAKAILPTDYSLGWVGSALQEKLASTDTTVIFVLALVMVFLILAAQYESWSLPLSVL
TAVPFGVFGALLATWARGLSNDVYFQVALVTLVGLAAKNAILIVEFAVEAWRGGRSLD
AAASFASRLRFRPIVMTSLAFILGCVPLAISTGAGANSRHALGTAVIGGMLAATCIAT
LFVPYFFKIIMQISLKIQGKTDPNAGKDFTGDGQEDL"
sig_peptide 376040..376135
/locus_tag="Ddes_0308"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.908) with cleavage site probability 0.503 at
residue 32"
misc_feature 376058..379159
/locus_tag="Ddes_0308"
/note="The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region:
2A0602; TIGR00915"
/db_xref="CDD:162104"
misc_feature <377063..377476
/locus_tag="Ddes_0308"
/note="Protein export membrane protein; Region: SecD_SecF;
cl14618"
/db_xref="CDD:199094"
gene 379240..380835
/locus_tag="Ddes_0309"
/db_xref="GeneID:7283965"
CDS 379240..380835
/locus_tag="Ddes_0309"
/inference="protein motif:TFAM:TIGR01845"
/note="TIGRFAM: RND efflux system, outer membrane
lipoprotein, NodT family;
PFAM: outer membrane efflux protein;
KEGG: lip:LI0995 outer membrane efflux protein"
/codon_start=1
/transl_table=11
/product="NodT family RND efflux system outer membrane
lipoprotein"
/protein_id="YP_002478902.1"
/db_xref="GI:220903590"
/db_xref="InterPro:IPR003423"
/db_xref="InterPro:IPR010131"
/db_xref="GeneID:7283965"
/translation="MSSISNAGRMRLTGAVFVLSVFMLSACSLAPRYERPEMDMPAQW
RTVDMGAAPLNTDWWNRFNDPVLTALVDEALKNNQDIAESLAKIDSAASQVGIATADL
LPSVSGSASSMAQGASEKTPNTMPFDKSGLSRTTATNQAALSASWELDLWGKNRNNYT
MLSDVLMSTVIGHEALRLSVAGQTAQSYFALLALDMQLDTARRTLKTREDAFSIYSSR
YKQGDITELDWQRARAEVEIARAQVHTSTVAVDRAEAGLAVLLGRSPRDIMERGMPRG
QAIGMLPSPPVLPEGLPSDLLQRRPDVRAAEFMLMANNANIGVARAQFFPSVSLTGML
GTVSAAVGSLFTGPAGAWSYGVTGSMPLLDFGRTWYNVKDAEARKKASVAVYRKTVQT
AFEDMRTSLTAQREADAIVRSMQIQVESLRRATTIARLQYDNGYTDYLTVLDAERQLF
AAELQLASALRDRLDNVVSVCMALGGGWNDPGASPSFPVVNTEKLLNQETSAGASGKS
SGKAAAESAPAAPEARPQGGVSL"
sig_peptide 379240..379320
/locus_tag="Ddes_0309"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.959) with cleavage site probability 0.440 at
residue 27"
misc_feature 379309..380670
/locus_tag="Ddes_0309"
/note="efflux transporter, outer membrane factor (OMF)
lipoprotein, NodT family; Region: outer_NodT; TIGR01845"
/db_xref="CDD:162557"
gene 381117..381764
/locus_tag="Ddes_0310"
/db_xref="GeneID:7283966"
CDS 381117..381764
/locus_tag="Ddes_0310"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478903.1"
/db_xref="GI:220903591"
/db_xref="GeneID:7283966"
/translation="MVKPVITIIFLCGVLLAAPLTASRAAAASNQGAKSQVADKAKQG
VPCVDRSKARADQNRTVTVKKRKDAVHARAWTFREGSSLDAWQAQGTPADNLHSRAVA
PAGGKAVDTAKGIDSALNAASGAHKNKSALALSVEDESSSWREPGPGCITPDENLSME
SRHVVRAYADTTVGDDLSIGLGPELILRNEQRERPSSNKQPDSALGLGMQFKLDF"
sig_peptide 381117..381200
/locus_tag="Ddes_0310"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.703 at
residue 28"
gene 382111..383286
/locus_tag="Ddes_0311"
/db_xref="GeneID:7283967"
CDS 382111..383286
/locus_tag="Ddes_0311"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: dvl:Dvul_0013 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478904.1"
/db_xref="GI:220903592"
/db_xref="GeneID:7283967"
/translation="MALSNFLIRPPSEAQQGQAAGQRRAAPVAGGASFAAVMQGQARQ
AEGTAPLPQAVQAMSGQESPAQVQPAELAGMQAPARNLVLAGRSPSDLMRAQVFGKAQ
ADLRQTQAIEGLMQSVSGNGSTLDLARSMGAARQLHSLTSTVGERLGGLNGGDFIHSR
PAAPGQGKARQKRQQPDAAEMELGKLSAQFESGRDGIAAIGYDRNGGTSYGKYQVSSR
AGSLNDFLAFLDGEAPDISKRLRSAGPGNTGSRKGAMPDMWRAIADEQPERFEALQEA
YVRESHYKPAVEGISQRTSLEADSLSPAMREVIWSTSVQHGPTGATRIFARAEAMSGD
PGDPAYERRLITNVYKVRSGQFGSSTSEVQAAVQNRFRQERTLALNLLDGGHKANLA"
misc_feature <382672..>382764
/locus_tag="Ddes_0311"
/note="lysozyme_like domain. This contains several
members including Soluble Lytic Transglycosylases (SLT),
Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes
(HEWL), chitinases, bacteriophage lambda lysozymes,
endolysins, autolysins, and chitosanases; Region:
lysozyme_like; cl00222"
/db_xref="CDD:213086"
misc_feature order(382678..382683,382687..382689,382711..382713,
382750..382752,382756..382758)
/locus_tag="Ddes_0311"
/note="lysozyme catalytic cleft [active]"
/db_xref="CDD:29018"
misc_feature order(382681..382683,382735..382737)
/locus_tag="Ddes_0311"
/note="lysozyme catalytic site [active]"
/db_xref="CDD:29018"
gene 383301..385025
/locus_tag="Ddes_0312"
/db_xref="GeneID:7283968"
CDS 383301..385025
/locus_tag="Ddes_0312"
/inference="protein motif:PFAM:PF01075"
/note="PFAM: glycosyl transferase family 9;
KEGG: dvl:Dvul_2523 glycosyl transferase family protein"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_002478905.1"
/db_xref="GI:220903593"
/db_xref="InterPro:IPR002201"
/db_xref="GeneID:7283968"
/translation="MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQA
LIHDLHHAGLRVGLVCLENFASALPLLQHVDVTWPLPGARIMADVEGDWRRAALRLLS
FVREIRRSMPDARVINLTATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFL
AGTVLRRLNTPFNLVDTFRMVGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFA
RGLLEEGAPAAGITSACKGFVALQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLG
SRAEQALAEEYVQAARGPCISAVGRTDIAQLAGLLAHCRLLVTNDTGTMHLAAGLGVP
CLAIFLATAQPWDTGPYLPGCCCLEPAMPCHPCPYGRACPHGHACLGRISPEGVGDLV
CGWLATGRWNAALEKGASCIGREARVWQTETDSYGFAALRCLSKHGSEDRSQWLDAQR
FLWRQMFDKLGERVPSDGQGRAIPAKIALSPSFAAAVGDVLSQALQLLALLEEQAGLV
GKSTMAGQLFLRNCERLQNLLDASPAFTALGGFWRELRQQRGGDMADLTQLIQCLRSA
LMEWKNSI"
misc_feature 383382..384494
/locus_tag="Ddes_0312"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:31200"
misc_feature <384006..384464
/locus_tag="Ddes_0312"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature order(384021..384026,384123..384125,384219..384224,
384258..384260,384267..384272,384279..384281)
/locus_tag="Ddes_0312"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene 385105..385710
/locus_tag="Ddes_0313"
/db_xref="GeneID:7283969"
CDS 385105..385710
/locus_tag="Ddes_0313"
/inference="similar to AA sequence:KEGG:Dvul_2524"
/note="KEGG: dvl:Dvul_2524 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478906.1"
/db_xref="GI:220903594"
/db_xref="GeneID:7283969"
/translation="MIIVDGNESVKSISAFENLEQALTSIMRDEEMEGRVITDVLVND
EAFSEIYPHQAEDIACDSISRLEVRSVPNGELAVDIAGEMGKVTLMMEHGARQVARLF
REASDTDALELLQDLLDVTRDFMNMLGDLRGRYAEGDSEAFAEKTEKLSSLISEMSDG
LENEDWILLSDLLEYEFLPICAEWREVSEQLRQQIIQRVAQ"
gene 385727..386050
/locus_tag="Ddes_0314"
/db_xref="GeneID:7283970"
CDS 385727..386050
/locus_tag="Ddes_0314"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: lip:LI1016 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478907.1"
/db_xref="GI:220903595"
/db_xref="GeneID:7283970"
/translation="MAQGLSLLDQALDLARQEMNALEDGAYDKAVILAEKRNEVTSMA
WYMLEDGRAEEYRGHLVELARVQEHLTGLATRARDALRQDLQRSRLERQRMNGYQQSI
GQALQ"
gene 386669..387373
/locus_tag="Ddes_0315"
/db_xref="GeneID:7283971"
CDS 386669..387373
/locus_tag="Ddes_0315"
/EC_number="6.3.2.6"
/inference="protein motif:PRIAM:6.3.2.6"
/note="PFAM: SAICAR synthetase;
KEGG: emi:Emin_0220
phosphoribosylaminoimidazolesuccinocarboxamide synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_002478908.1"
/db_xref="GI:220903596"
/db_xref="InterPro:IPR001636"
/db_xref="GeneID:7283971"
/translation="MNLVYRGKTKDVYDNGEDGLRLIFSDRVTKNAAGEIDPGGNTVA
ENTEPGQGEACLLMASAIFEELAEKNGVSTHMIAYDLPSLSMDVRRGTMFNPGIEWIA
RWVCTGSFLRRYGMVPGVYDGMRFADPVFEITLKDDAAGDPLVVPSALVALGVVDART
MTALLDSNAKAMQAIQAMFAARDLDLWDIKIEWALDAKGAPMLIDEVSPGCCRAFDMK
TKKRVSGIALAERFRR"
misc_feature 386675..387370
/locus_tag="Ddes_0315"
/note="5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase; Region: SAICAR_synt;
cl00231"
/db_xref="CDD:206919"
misc_feature order(386678..386683,386687..386692,386696..386698,
386702..386707,386726..386728,386732..386734,
386891..386893,386933..386935,386939..386941,
386945..386947,387074..387076,387242..387244,
387278..387283)
/locus_tag="Ddes_0315"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133468"
misc_feature order(386681..386683,386687..386698,386702..386704,
386726..386728,386762..386764,386894..386896,
386930..386941,386945..386947,386963..386965,
386969..386971,386975..386977,386987..386995,
387068..387070,387074..387076,387092..387094,
387230..387238,387242..387244,387281..387283,
387296..387307)
/locus_tag="Ddes_0315"
/note="active site"
/db_xref="CDD:133468"
misc_feature order(386762..386764,386963..386965,386969..386971,
386975..386977,386987..386995,387068..387070,
387092..387094,387230..387238,387296..387307)
/locus_tag="Ddes_0315"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133468"
gene complement(387637..388791)
/locus_tag="Ddes_0316"
/db_xref="GeneID:7283972"
CDS complement(387637..388791)
/locus_tag="Ddes_0316"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: cmi:CMM_0897 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478909.1"
/db_xref="GI:220903597"
/db_xref="GeneID:7283972"
/translation="MKTVDRPPLLSSAEKNAPYTLALKPPALRVPPNEINLGGGSNIL
TTNGLVQPGSLNVLATGGTYTLILQAADTQGFIAQYGGWLDAIRASVLFSGGLEAINF
EGLDGSDLADFLDVLNDVLWDLKDNSVDIQPPDLADALHDPAGSPIAPTVAPLAATLA
ETDAGHHTQDTQHAAGHDAAQDSAQDATLATHDGPTLLTDDGLNTAFNAPTDNAGTHT
DVPGPDATALAHFSEDAEEQVQPLFAFLDGHTTDTSASMPLEGGDDALHNGYLGNEGE
NSGNSAGLHAPITLTYGDESLDSLFTAAGEQNTELAGTGLESDALHDMGLTDMSTALD
QNPLAGPEAASGPAAAGGLAAAASEVSDIPSVMDSCQEATDSAAREMTTC"
gene complement(388975..389133)
/locus_tag="Ddes_0317"
/db_xref="GeneID:7283973"
CDS complement(388975..389133)
/locus_tag="Ddes_0317"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478910.1"
/db_xref="GI:220903598"
/db_xref="GeneID:7283973"
/translation="MPAITLSRPVQGQVVTVSAAVRGKAMMRLLKKTESSLAAISRTN
GTPLTPEP"
gene complement(389985..390060)
/locus_tag="Ddes_R0006"
/note="tRNA-Phe1"
/db_xref="GeneID:7283974"
tRNA complement(389985..390060)
/locus_tag="Ddes_R0006"
/product="tRNA-Phe"
/db_xref="GeneID:7283974"
gene 390349..391884
/locus_tag="Ddes_0318"
/db_xref="GeneID:7283975"
CDS 390349..391884
/locus_tag="Ddes_0318"
/inference="protein motif:PFAM:PF00654"
/note="PFAM: Chloride channel core;
KEGG: cpe:CPE1408 hypothetical protein"
/codon_start=1
/transl_table=11
/product="chloride channel protein"
/protein_id="YP_002478911.1"
/db_xref="GI:220903599"
/db_xref="InterPro:IPR001807"
/db_xref="InterPro:IPR014743"
/db_xref="GeneID:7283975"
/translation="MLFSFPAADTWFSAGSINVRRVCPAADSAKNASNKGMLVKTGNP
FLQIKHDVTEMGVFGLGKIIVQALLVGSATGAVVGLFRHLNDAITLWLVGAVGQRGLA
DHLMVLAVFGGLLLLAVISVLLLRAEPLISGSGIPQVELMVKGKLRMNWLRVLLCKFA
GALAALTGGLSVGREGPCIMMGASLGVGVGTLWKDSTAANNPRYLVGGSAAGLAAAFG
APLAGMCFAFEEMKTPLRAPMVITCAITAFAAIYVMQGIFGFGLVFPFGVHSMLPWRE
WWLVPVAGVVMGGLGVLYNTVLIRMTLWADKTRLLPLHLRVVIPFMCAGLFLYFYPTV
LAGFGIGALDLARLSIPLTALLLLLGVKMLFSCASFATGVAGGLLMPILFMGGMAGAC
LASTMLLFDMVAPDRAATILILCMAGLFGSSVRAPLTGAFLMLEMTDSYHNMVFVILA
AYIAAFVADKLGNEPVYDSLRRRCVIQGRIRMPRRKPRRPQGPQGGAGGAMAKRAFSQ
PGT"
misc_feature 390556..391764
/locus_tag="Ddes_0318"
/note="ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked...; Region: EriC;
cd01031"
/db_xref="CDD:79360"
misc_feature 390733..391728
/locus_tag="Ddes_0318"
/note="Voltage gated chloride channel; Region:
Voltage_CLC; pfam00654"
/db_xref="CDD:201375"
misc_feature order(390745..390759,390865..390879,391477..391491,
391747..391749)
/locus_tag="Ddes_0318"
/note="Cl- selectivity filter; other site"
/db_xref="CDD:79360"
misc_feature order(390748..390750,390754..390756,390871..390876,
391477..391485,391747..391749)
/locus_tag="Ddes_0318"
/note="Cl- binding residues [ion binding]; other site"
/db_xref="CDD:79360"
misc_feature 390871..390873
/locus_tag="Ddes_0318"
/note="pore gating glutamate residue; other site"
/db_xref="CDD:79360"
misc_feature order(391006..391008,391036..391038,391069..391071,
391090..391092,391621..391623,391630..391632,
391654..391656,391690..391692,391711..391716,
391723..391725)
/locus_tag="Ddes_0318"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:79360"
misc_feature 391036..391038
/locus_tag="Ddes_0318"
/note="H+/Cl- coupling transport residue; other site"
/db_xref="CDD:79360"
gene 392001..393266
/locus_tag="Ddes_0319"
/db_xref="GeneID:7283976"
CDS 392001..393266
/locus_tag="Ddes_0319"
/inference="similar to AA sequence:KEGG:Dvul_0136"
/note="KEGG: dvl:Dvul_0136 phenylacetate-coenzyme A
ligase, putative"
/codon_start=1
/transl_table=11
/product="phenylacetate-coenzyme A ligase"
/protein_id="YP_002478912.1"
/db_xref="GI:220903600"
/db_xref="GeneID:7283976"
/translation="MTRKDRTEGIYSRREVLDESERRQYCLIQLKDLLSYAYRYSEDV
KKRFDRAQFNVEKFKTLADIKHIPILKKKELIFLQSMGPRLGGLLTKDIGELKRIFLS
PGPIFDPEDRGEDYWGYTEAFYSVGFRPGDAVQNTFNYQLTPAGLMFEEPLRNLGCAV
IPAGPTDAATQLDIMQKLRVSGYVGTPSFLMHLAQKAEEKGLNLRKDLFLEVAFVTGE
RLSEKMRSQMEKKYDLVMRQGYGTADVGCIGYECFHKTGLHVANRCFVEICHPDTGIP
LKDGEVGEIVVTAFNKTYPLIRLATGDLSYIDRSPCACGRTSPRLGSIVGRVDTTARI
MGMFVYPHQVEQVMSRFEEIKRWQIEVTNPGGIDEMTLFVETSAFKREEELLHQFREK
IKLRPELRVLAPGSLPPQIRPIEDKRHWD"
misc_feature 392031..393224
/locus_tag="Ddes_0319"
/note="Coenzyme F390 synthetase [Coenzyme metabolism];
Region: PaaK; COG1541"
/db_xref="CDD:31730"
misc_feature <392355..>392963
/locus_tag="Ddes_0319"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
gene 393689..394543
/locus_tag="Ddes_0320"
/db_xref="GeneID:7283977"
CDS 393689..394543
/locus_tag="Ddes_0320"
/inference="similar to AA sequence:KEGG:Glov_1444"
/note="KEGG: glo:Glov_1444 protein of unknown function
DUF169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478913.1"
/db_xref="GI:220903601"
/db_xref="GeneID:7283977"
/translation="MQELVNQTQKLLDLLGHNEAPLGIYYADVKPEGFGPKAGETFSR
EREAAGEIDWQKAFGAFSCIIGNIRLARKKRTAAWISHKECGCMGGGYYSGMYAPYLD
MNVRYVSTGMPGTPIEGEHYLPSPESMVAFMEDCAPPLQEGKYCVIKPLEQFSPAEPP
LVVVFFARPEVMTGLHNLACYTVGSHTGVVSPFGAGCTNIIAWPLVYERRGQACAVIG
GFDPSARKYMKADELSFAVPLGLYGKMLDRMDSSALTRETWAGVRKKVLKSRRIWGEG
GEEGGTAS"
misc_feature 393710..394435
/locus_tag="Ddes_0320"
/note="Uncharacterized ArCR, COG2043; Region: DUF169;
cl00894"
/db_xref="CDD:193970"
gene complement(394817..395242)
/locus_tag="Ddes_0321"
/db_xref="GeneID:7283978"
CDS complement(394817..395242)
/locus_tag="Ddes_0321"
/inference="similar to AA sequence:KEGG:DVU3225"
/note="KEGG: dvu:DVU3225 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478914.1"
/db_xref="GI:220903602"
/db_xref="GeneID:7283978"
/translation="MNANLVFALIIAFSILELAILGGVLFFYLRLRRSETMLNALQGN
QEALLARIEMNARLEREIVATFAQRQAELQNLDAKLEERAQELRRLLEQAEGISRSPQ
FLREIILNGRRKGLSSRQIARNAGLSVDEVDLILAQETD"
gene complement(395239..395568)
/locus_tag="Ddes_0322"
/db_xref="GeneID:7283979"
CDS complement(395239..395568)
/locus_tag="Ddes_0322"
/inference="similar to AA sequence:KEGG:Dvul_0162"
/note="KEGG: dvl:Dvul_0162 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478915.1"
/db_xref="GI:220903603"
/db_xref="GeneID:7283979"
/translation="MSVDATMAVLYAQTGMATSMANAAAVGPQAAAAMSRVLAAEMAR
QERQQIAKSEAGDKAHLSPDADGGPPVPQFGSRRRKRPPPPPPEANDAPREPESPLVG
KLLNVKV"
sig_peptide complement(395497..395568)
/locus_tag="Ddes_0322"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.945) with cleavage site probability 0.784 at
residue 24"
gene complement(395756..396421)
/locus_tag="Ddes_0323"
/db_xref="GeneID:7283980"
CDS complement(395756..396421)
/locus_tag="Ddes_0323"
/inference="protein motif:PFAM:PF03748"
/note="PFAM: flagellar basal body-associated protein FliL;
KEGG: dvu:DVU3227 flagellar basal body-associated protein,
putative"
/codon_start=1
/transl_table=11
/product="flagellar basal body-associated protein FliL"
/protein_id="YP_002478916.1"
/db_xref="GI:220903604"
/db_xref="InterPro:IPR005503"
/db_xref="GeneID:7283980"
/translation="MANKTDVKDAPARDEVQISLGPDPAVRKVELDLDDAPFLKEEQE
AASPAVQDDKKLPAQVAPDPKAEKKQKLLILGAGGAALLLILGAAVWWFFLRTAPPPP
PEIKPEVIVVPSQPVDVPPADYVKELAPFVVPRQVDGTARFLVCKFSTISKSPSVSGE
MDHKMISLRDALFFYLSGKSDDYLLNPGNAVTIKRDLTSILNDYLSSGRIDDVLFESY
LAE"
misc_feature complement(395765..396043)
/locus_tag="Ddes_0323"
/note="Flagellar basal body-associated protein FliL;
Region: FliL; pfam03748"
/db_xref="CDD:202757"
gene complement(396481..396861)
/locus_tag="Ddes_0324"
/db_xref="GeneID:7283981"
CDS complement(396481..396861)
/locus_tag="Ddes_0324"
/inference="protein motif:PFAM:PF00072"
/note="PFAM: response regulator receiver;
KEGG: dvl:Dvul_0160 response regulator receiver protein"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_002478917.1"
/db_xref="GI:220903605"
/db_xref="InterPro:IPR001789"
/db_xref="GeneID:7283981"
/translation="MPYNPNMRVLVVDDFSTMRRIVRNILRQIGFQNVVEADDGTTAW
EVLNREKIDFIVSDWNMPNMTGIELLRKVRASEQFAHIPFLMVTAEAQQENIIEAVQA
KVSNYIVKPFTADTMKQKIDKIFG"
misc_feature complement(396487..396852)
/locus_tag="Ddes_0324"
/note="chemotaxis regulatory protein CheY; Provisional;
Region: PRK10610"
/db_xref="CDD:170568"
misc_feature complement(396487..396834)
/locus_tag="Ddes_0324"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(396529..396534,396541..396543,
396598..396600,396664..396666,396688..396690,
396820..396825))
/locus_tag="Ddes_0324"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(396688..396690)
/locus_tag="Ddes_0324"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(396664..396672,396676..396681))
/locus_tag="Ddes_0324"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(396526..396534)
/locus_tag="Ddes_0324"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(396936..397718)
/locus_tag="Ddes_0325"
/db_xref="GeneID:7283982"
CDS complement(396936..397718)
/locus_tag="Ddes_0325"
/EC_number="4.1.1.65"
/inference="protein motif:TFAM:TIGR02479"
/note="KEGG: dvl:Dvul_0159 FliA/WhiG family RNA polymerase
sigma factor;
TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family;
RNA polymerase sigma factor, sigma-70 family;
PFAM: sigma-70 region 3 domain protein; sigma-70 region 2
domain protein; sigma-70 region 4 domain protein; Sigma-70
region 4 type 2"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-28 subunit FliA/WhiG"
/protein_id="YP_002478918.1"
/db_xref="GI:220903606"
/db_xref="InterPro:IPR000943"
/db_xref="InterPro:IPR007624"
/db_xref="InterPro:IPR007627"
/db_xref="InterPro:IPR007630"
/db_xref="InterPro:IPR012845"
/db_xref="InterPro:IPR013249"
/db_xref="InterPro:IPR014284"
/db_xref="GeneID:7283982"
/translation="MKTGTAQAHTPGPWEALETGATAWENFSPAEQEAVVRHYAPKIR
FLALRLKAKLPRSVELGELISSGTLGLMEALGKFRPQLGIRFETYAESRIRGAMLDEL
RRLDWFPRSLRQRVRTLDEAIRKVEHEHGRQATEEELQAITGLPLRDVRQGLEALQNQ
LWLSLDAIQDTISGDAQEPGGEPYRKTAFRELVERVAPLIDRLTPREKLVLSLYYTDE
LNMRETAEVMGITEGRVSQLHSQALSRLRKEFVSLYGEDADI"
misc_feature complement(396969..397616)
/locus_tag="Ddes_0325"
/note="RNA polymerase sigma factor, FliA/WhiG family;
Region: FliA_WhiG; TIGR02479"
/db_xref="CDD:162877"
misc_feature complement(397395..397616)
/locus_tag="Ddes_0325"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(<397218..397358)
/locus_tag="Ddes_0325"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature complement(396978..397139)
/locus_tag="Ddes_0325"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(396990..396992,396996..397001,
397005..397013,397017..397022,397026..397028,
397056..397061,397077..397079,397107..397109))
/locus_tag="Ddes_0325"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(397881..398693)
/locus_tag="Ddes_0326"
/db_xref="GeneID:7283983"
CDS complement(397881..398693)
/locus_tag="Ddes_0326"
/inference="protein motif:PFAM:PF01656"
/note="PFAM: Cobyrinic acid ac-diamide synthase;
KEGG: dvl:Dvul_0158 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_002478919.1"
/db_xref="GI:220903607"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:7283983"
/translation="MSGTFPLVFSVTSGKGGVGKTNISVNLAICLAQLGKQVVLIDAD
LGLANVDVVLGLTPQKNIFHLFHEGASVGDILFPTPYGFSILPASSGMSEMLTLSTGQ
KLELLDAVDELEDDLDYLIVDTGAGISDNVLYFNMAAQERLVVLTPEPTSLTDAYALI
KVLKTNHGVERFRVCVNMAPDQKTAKEMFVRLAQACDHFLSGVSLELVSVIPRDTGVR
KAVVQQLPFCVSEPQSPASRAVMDLARGITQWDVPENLDGNIKFFWKKLLFR"
misc_feature complement(397884..398672)
/locus_tag="Ddes_0326"
/note="Antiactivator of flagellar biosynthesis FleN, an
ATPase [Cell motility]; Region: flhG; COG0455"
/db_xref="CDD:30803"
misc_feature complement(<398538..398672)
/locus_tag="Ddes_0326"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
misc_feature complement(398631..398654)
/locus_tag="Ddes_0326"
/note="P-loop; other site"
/db_xref="CDD:73301"
misc_feature complement(398058..>398324)
/locus_tag="Ddes_0326"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
gene complement(398723..399766)
/locus_tag="Ddes_0327"
/db_xref="GeneID:7283984"
CDS complement(398723..399766)
/locus_tag="Ddes_0327"
/inference="protein motif:PFAM:PF00448"
/note="PFAM: GTP-binding signal recognition particle SRP54
G- domain;
KEGG: dvl:Dvul_0157 flagellar biosynthesis protein FlhF,
putative"
/codon_start=1
/transl_table=11
/product="GTP-binding signal recognition particle SRP54 G-
domain-containing protein"
/protein_id="YP_002478920.1"
/db_xref="GI:220903608"
/db_xref="InterPro:IPR000897"
/db_xref="GeneID:7283984"
/translation="MQVKTFTGATSQEILARIKAEMGPDAVILGNRTYRKNGAVCHEI
TAGMERPQSANGASGGAPGGWGEWHKEWQQIKDQLFALMKPAIQLERLTPRQRVALEY
LQREGISDAVAVDLYQRLVSQPGASVLECLCGMVPVKGWGPAYWDQRLHLMAGPFGFG
KTTTALRFALHRRKAEPEARVAFINADCLRGNGRLVLRHWAELSNFSYLEAPDRAAMQ
EALKATADADAVFIDVPGLDRTTSLAQWREEMGLAQVDAATHLTLSPYCDAVQIQAFL
HRYKCDGPGSLVWTKLDEAVSFGTIVNVACAAGLPISALSYGAELKESLAPATEPLVW
RLIFKRQIPGQAA"
misc_feature complement(399059..399766)
/locus_tag="Ddes_0327"
/note="flagellar biosynthetic protein FlhF; Region: FlhF;
TIGR03499"
/db_xref="CDD:211827"
misc_feature complement(398750..399313)
/locus_tag="Ddes_0327"
/note="SRP54-type protein, GTPase domain; Region: SRP54;
smart00962"
/db_xref="CDD:198030"
misc_feature complement(398831..399313)
/locus_tag="Ddes_0327"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene complement(400154..400618)
/locus_tag="Ddes_0328"
/pseudo
/db_xref="GeneID:7283985"
gene 400786..400980
/locus_tag="Ddes_0329"
/db_xref="GeneID:7283986"
CDS 400786..400980
/locus_tag="Ddes_0329"
/inference="protein motif:SMART:SM00530"
/note="SMART: helix-turn-helix domain protein"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_002478921.1"
/db_xref="GI:220903609"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:7283986"
/translation="MLRSNLKKIMNEKKVTYKELEARTGLSSQTITRARNHLIIECRM
STLLNIAQALDVKVKDLFSE"
misc_feature 400798..400971
/locus_tag="Ddes_0329"
/note="Cro/C1-type HTH DNA-binding domain; Region: HTH_26;
pfam13443"
/db_xref="CDD:205621"
misc_feature order(400804..400806,400816..400818,400891..400893)
/locus_tag="Ddes_0329"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(400813..400815,400888..400890)
/locus_tag="Ddes_0329"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(400834..400839,400870..400872,400879..400881,
400891..400896)
/locus_tag="Ddes_0329"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 401333..401599
/locus_tag="Ddes_0330"
/db_xref="GeneID:7283987"
CDS 401333..401599
/locus_tag="Ddes_0330"
/inference="protein motif:PFAM:PF01381"
/note="PFAM: helix-turn-helix domain protein;
KEGG: hau:Haur_2753 XRE family transcriptional regulator"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_002478922.1"
/db_xref="GI:220903610"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:7283987"
/translation="MEKYPYLNEAVANVLKERREALAMSKRKLSELAMIERAYITGLE
NGKWNVTLNVFFFLSEALEIAPEKFIELVRNEIEQLKNERVHNQ"
misc_feature 401366..401539
/locus_tag="Ddes_0330"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(401378..401380,401390..401392,401465..401467)
/locus_tag="Ddes_0330"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(401387..401389,401462..401464)
/locus_tag="Ddes_0330"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(401408..401413,401444..401446,401453..401455,
401465..401470)
/locus_tag="Ddes_0330"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene complement(401682..403781)
/gene="flhA"
/locus_tag="Ddes_0331"
/db_xref="GeneID:7283988"
CDS complement(401682..403781)
/gene="flhA"
/locus_tag="Ddes_0331"
/inference="protein motif:TFAM:TIGR01398"
/note="membrane protein involved in the flagellar export
apparatus"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FlhA"
/protein_id="YP_002478923.1"
/db_xref="GI:220903611"
/db_xref="InterPro:IPR001712"
/db_xref="InterPro:IPR006301"
/db_xref="GeneID:7283988"
/translation="MASASLPKLDYSRFSRNGEIMLAAGVVIILLVMLVPLPTFFLDI
MLCVSISISLLVLITTMFMSSPLEFTIFPSLLLVTTLLRLSLNVAATRLILLNGDMGV
DAAGSVIRAFGEFVVGGSYVVGAVIFMILFILNKVVITAGTTRIAEVAARFTLDAMPG
KQMAIEADLNAGLIDEEEATARRKGMRKEADFYGAMDGACKFVSGDVNAGMFITIVNI
VGGIIIGMVQKDMDWNTALMTYSLLTIGDGLVSTIPSIIVSTGTGLLVSRAASEAKMG
EEFLAQLTFNSRALKMVSAVLLLFAIVPGLPTIPFLVIAGLIFTVARLTEKNDADEEA
RERKEKNAKAGSGTADTPEEVQALLPLDTLELEVGYGLIPLVDEEQSGNLLARIRSIR
RQFALDMGVVIPSLHLRDNLQLKPGQYSLLIKGNQVASAEILVDHFLAMDPGNVTTKI
HGIETREPAFNLPALWIPDSQREEAMLAGYTVVDPATVIATHLTEVFKRHLSDFLDRQ
AVQGLLDTVAKHSPKAVEDLVPGVLPLGTVQKVLQLLVRENVSIRDMLTIVETLGDFG
AGVKNPDMLTEYVREKLARSIVRPYLDSQGTLPVLTLAPNAERMVQEGVRQADTGATF
LSLNPASAQRLVQNISAAVENAVNTDGQPVLLVNPVIRPHLAQLVTRFLPSVPVISQA
EIPPDIRLQAVGSVAAE"
misc_feature complement(401685..403781)
/gene="flhA"
/locus_tag="Ddes_0331"
/note="flagellar biosynthesis protein FlhA; Validated;
Region: flhA; PRK06012"
/db_xref="CDD:180350"
misc_feature complement(401712..403667)
/gene="flhA"
/locus_tag="Ddes_0331"
/note="FHIPEP family; Region: FHIPEP; pfam00771"
/db_xref="CDD:201434"
gene complement(403833..404912)
/gene="flhB"
/locus_tag="Ddes_0332"
/db_xref="GeneID:7283989"
CDS complement(403833..404912)
/gene="flhB"
/locus_tag="Ddes_0332"
/inference="protein motif:TFAM:TIGR00328"
/note="membrane protein responsible for substrate
specificity switching from rod/hook-type export to
filament-type export"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FlhB"
/protein_id="YP_002478924.1"
/db_xref="GI:220903612"
/db_xref="InterPro:IPR006135"
/db_xref="InterPro:IPR006136"
/db_xref="GeneID:7283989"
/translation="MFGKQKDPSKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGM
SILYAWIGPMSEAIKKLFRHFLSHAWEFDPNPENVYSLTLELMIEVCKIIMPILLTLA
VLSMLAQRLQVGKLWTTKVFKPKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILST
IPAWIIYKEYQNFLPMYYATTEGVAVYMLQMAFKLVSYALIPILIIAAFDVWQSRYSY
KENMKMTKDEVKDEHKQADGDPVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIA
VALRYNATEAPAPVVLAKGADHLAEKIKQAAREHNVPIRENVPLARALYKSAEVGDMI
PEELYKAVATVLAAIWKLKPKVHNS"
misc_feature complement(403854..404900)
/gene="flhB"
/locus_tag="Ddes_0332"
/note="flagellar biosynthesis protein FlhB; Reviewed;
Region: flhB; PRK05702"
/db_xref="CDD:180212"
misc_feature complement(403836..404087)
/gene="flhB"
/locus_tag="Ddes_0332"
/note="Uncharacterized homolog of the cytoplasmic domain
of flagellar protein FhlB [Function unknown]; Region:
COG2257"
/db_xref="CDD:32438"
gene 405372..406598
/locus_tag="Ddes_0333"
/db_xref="GeneID:7283990"
CDS 405372..406598
/locus_tag="Ddes_0333"
/inference="protein motif:PFAM:PF07690"
/note="PFAM: major facilitator superfamily MFS_1;
KEGG: dol:Dole_2623 major facilitator transporter"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily protein"
/protein_id="YP_002478925.1"
/db_xref="GI:220903613"
/db_xref="InterPro:IPR011701"
/db_xref="GeneID:7283990"
/translation="MFYGWKISLLSMGGNFMLQGTVLYCMNAFMEPLCVAYGWTRAEL
NISMAVAALVGQLAMPVAASLSARFALRRLMTAGALVGGVATILQGMTGNLALFTLLF
TIAWSATQICGGVVGNALVSNWFYYFRGRAFGLVNAGTSLSGVVLPLASMALINAFDV
STAYLVLGLLTCGLAPLSWFLVRDTPQAMHMHPDGRKHEPPAGRCRIAPDTSFRGLMH
SPYAYCMGIAFGLALMVSSSVMSQMKPRFVDLGLAPYTSMLLACAAALCAALGKYAWG
WACDRFTPLAAAHVIMLACALSLCLGFLPPTVWGMTIFSLSFGLCVGGLWTVLPAVVS
YYYGSGNFLPSYKFVSVFIVLRCLGYPIMGYSYDLTGGYRAADVVFVVMLLLSLALSM
CLREDDAVEGGGKRHN"
misc_feature 405396..>405926
/locus_tag="Ddes_0333"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(405438..405440,405447..405455,405459..405464,
405513..405515,405522..405527,405534..405536,
405546..405551,405555..405560,405699..405704,
405711..405716,405723..405728,405735..405737,
405768..405773,405780..405785,405801..405803)
/locus_tag="Ddes_0333"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature 405477..406385
/locus_tag="Ddes_0333"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
gene complement(406765..407643)
/locus_tag="Ddes_0334"
/db_xref="GeneID:7283991"
CDS complement(406765..407643)
/locus_tag="Ddes_0334"
/inference="protein motif:PFAM:PF02153"
/note="PFAM: Prephenate dehydrogenase;
KEGG: dvl:Dvul_2473 prephenate dehydrogenase"
/codon_start=1
/transl_table=11
/product="prephenate dehydrogenase"
/protein_id="YP_002478926.1"
/db_xref="GI:220903614"
/db_xref="InterPro:IPR003099"
/db_xref="GeneID:7283991"
/translation="MTAHKDQSRCRATTADSLDADTVDSTEAGKTKEHAGRTVIVGSR
GRMGAMLVARAEAAGLGIVGVDVPLAPEKLSESCSGADMAVLCVPAAVFGEVAAAVCP
HLPARAVLADITSVKEQPMRQMERVWPGPVVGTHPLFGPSPEAEADLPVALTPGRNAE
PEHVALVEAFFTRIGCRTFMTTAEKHDKAMARIQNMNFITSLAYFSLLAGQDDLLPFL
TPSFRRRHNAARKMLTEDARLFAGLFEANAHSHEAVRQYRQMLNLAAAGDIDLLCQRA
AWWWPEECGQDELAEA"
misc_feature complement(406846..407541)
/locus_tag="Ddes_0334"
/note="Prephenate dehydrogenase [Amino acid transport and
metabolism]; Region: TyrA; COG0287"
/db_xref="CDD:30635"
misc_feature complement(<407038..407535)
/locus_tag="Ddes_0334"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene complement(407640..409094)
/locus_tag="Ddes_0335"
/db_xref="GeneID:7283992"
CDS complement(407640..409094)
/locus_tag="Ddes_0335"
/EC_number="2.5.1.19"
/inference="protein motif:TFAM:TIGR01356"
/note="KEGG: dvu:DVU0463 3-phosphoshikimate
1-carboxyvinyltransferase;
TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase;
PFAM: EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase)"
/codon_start=1
/transl_table=11
/product="3-phosphoshikimate 1-carboxyvinyltransferase"
/protein_id="YP_002478927.1"
/db_xref="GI:220903615"
/db_xref="InterPro:IPR001986"
/db_xref="InterPro:IPR006264"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:7283992"
/translation="MSQTKGAAAANHAVEAAGITETVTVTAPASKSVSHRYLMGAALA
GGTSIVRHTLESRDLERTRAILCAAGATMAELPESTPASGAWQVTGMNGAPRGGTAAA
PLSCDVEESGTTCRLLTAVLAAGQGVFRIHGAARMHERPIAELTDALAALGTQTSFEE
KPDCPPCVLTAHGLDPARCGGIVELGMDISSQYFSGLLLAAPMGPAPLTLALGGRKAV
SWPYVGLTLQCLTDYGIRFEVQTRRDIGAPWQPMGDGAWRRLDEALPGCLRITVYPGP
YRAGEYTVEGDWSGASYLLAAGAIGRRPVRVEGLRADSLQGDRAMLNILQRMGARVDV
QPLAVTVYPSRLHGVDLDMGHCPDLVPTVATVAAFAQGSTRIRNVAHLRHKESDRIKA
PATELGKAGVVVDELSDGMLVNGLGGRNNGKPDHPILPDGQTLSAHNDHRIAMSLALL
DLCRSEAVVRSRLDDPSVVGKSFPQFWNIWEKLA"
misc_feature complement(407646..409025)
/locus_tag="Ddes_0335"
/note="EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP)
to form...; Region: EPSP_synthase; cd01556"
/db_xref="CDD:30129"
misc_feature complement(407646..409022)
/locus_tag="Ddes_0335"
/note="3-phosphoshikimate 1-carboxyvinyltransferase;
Region: aroA; TIGR01356"
/db_xref="CDD:162316"
misc_feature complement(order(408234..408245,409005..409016))
/locus_tag="Ddes_0335"
/note="hinge; other site"
/db_xref="CDD:30129"
misc_feature complement(order(407682..407684,407769..407774,
407928..407930,407937..407942,407952..407954,
408021..408023,408429..408431,408438..408440,
408519..408527,408675..408677,408756..408761,
408765..408767,408987..408989,408999..409004))
/locus_tag="Ddes_0335"
/note="active site"
/db_xref="CDD:30129"
gene complement(409091..410350)
/locus_tag="Ddes_0336"
/db_xref="GeneID:7283993"
CDS complement(409091..410350)
/locus_tag="Ddes_0336"
/inference="protein motif:TFAM:TIGR01807"
/note="TIGRFAM: chorismate mutase;
PFAM: prephenate dehydratase; Chorismate mutase; amino
acid-binding ACT domain protein;
KEGG: dvl:Dvul_2475 chorismate mutase"
/codon_start=1
/transl_table=11
/product="chorismate mutase"
/protein_id="YP_002478928.1"
/db_xref="GI:220903616"
/db_xref="InterPro:IPR001086"
/db_xref="InterPro:IPR002701"
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR010957"
/db_xref="GeneID:7283993"
/translation="MGDSNSRWPGPASMPECGPECGTGRKEKIHNADERLSTIRHEID
AVDQDLLDLFNRRAALSREVGRIKAGSPGIIFRPVREKEVLDSLAARNPGPLPEDHLR
AIWREIFSSSRALQRPQNVAYLGPEGTFSYFAGIEYLGHAATFHPCNDIAQVFEEVAS
GRCELGVVPLENSLQGTVGVSFDLFLKHEVFIQAELFSRISHCLLSNAPSLAAVRTVY
SHPQPLAQCGTWLRTHLPNAGLVPVESTAAAAQRAAQGPDQEHAAAIGHGKLADLMSL
GTLASRIEDEPGNWTRFVIIGPKVSAAQGGKLQNPQPGHGGADKTSLLFTLPDKAGAL
SRVLDLLAGHGINMRKLESRPMRGQCWKYVFFADVESDLEDPRHADLLVQLGHACTGF
RILGSYPTGPQLDRLDLHTDEPEQKES"
misc_feature complement(409997..410233)
/locus_tag="Ddes_0336"
/note="Chorismate mutase type II; Region: CM_2; pfam01817"
/db_xref="CDD:201989"
misc_feature complement(409145..409999)
/locus_tag="Ddes_0336"
/note="Prephenate dehydratase [Amino acid transport and
metabolism]; Region: PheA; COG0077"
/db_xref="CDD:30426"
misc_feature complement(409454..409990)
/locus_tag="Ddes_0336"
/note="Prephenate dehydratase; Region: PDT; pfam00800"
/db_xref="CDD:144409"
misc_feature complement(409154..409393)
/locus_tag="Ddes_0336"
/note="C-terminal ACT domain of the bifunctional
chorismate mutase-prephenate dehydratase (CM-PDT) enzyme
and the prephenate dehydratase (PDT) enzyme; Region:
ACT_CM-PDT; cd04905"
/db_xref="CDD:153177"
misc_feature complement(order(409286..409297,409346..409357))
/locus_tag="Ddes_0336"
/note="putative L-Phe binding site [chemical binding];
other site"
/db_xref="CDD:153177"
gene complement(410352..411335)
/locus_tag="Ddes_0337"
/db_xref="GeneID:7283994"
CDS complement(410352..411335)
/locus_tag="Ddes_0337"
/inference="protein motif:PFAM:PF01959"
/note="catalyzes the formation of 3-dehydroquinate from
3-deoxy-aribino-heptulonate 7-phosphate"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate synthase"
/protein_id="YP_002478929.1"
/db_xref="GI:220903617"
/db_xref="InterPro:IPR002812"
/db_xref="GeneID:7283994"
/translation="MSRIYFSCVPFDKGDVTLALESGVDGVIVPAEHVEQVASLSRCP
VWAAEETPLVTLGAKADEEAVLQRLHKGERVVLARGWEVIPVENLLAQSDSVLAEAGT
LDEARLAAGILERGVAGIVVSRAAVADLKDIVAQCKMARSREELMPAVVTRVEPVGLG
HRVCADTLSLLRKGQGMLVGNSSAFTFLVHAETERNEYVAARPFRVNAGAVHAYVRLP
GDHTTYLGEFRAGQEVLVVDYTGETSVATLGRVKIEVRPMLLVEAQVETPEGVKTGTV
FLQNAETIRLTTPEGEAVSVVGLKPGDRVLCRLDEAGRHFGMRVREDIQEV"
misc_feature complement(410355..411335)
/locus_tag="Ddes_0337"
/note="3-dehydroquinate synthase; Provisional; Region:
PRK02290"
/db_xref="CDD:179407"
misc_feature complement(410358..411290)
/locus_tag="Ddes_0337"
/note="Predicted alternative 3-dehydroquinate synthase
[Amino acid transport and metabolism]; Region: COG1465"
/db_xref="CDD:31654"
gene complement(411340..412137)
/locus_tag="Ddes_0338"
/db_xref="GeneID:7283995"
CDS complement(411340..412137)
/locus_tag="Ddes_0338"
/EC_number="4.1.2.13"
/inference="protein motif:TFAM:TIGR01949"
/note="catalyzes the reversible formation of fructose
1,6-bisphosphate from glycerone phosphate and
D-glyceraldehyde 3-phosphate"
/codon_start=1
/transl_table=11
/product="fructose-bisphosphate aldolase"
/protein_id="YP_002478930.1"
/db_xref="GI:220903618"
/db_xref="InterPro:IPR002915"
/db_xref="InterPro:IPR010210"
/db_xref="GeneID:7283995"
/translation="MYLGKKVRLERIINRENGRTIIVPMDHGVTIGAVDGLMDMREAV
NDMARGGADAVLMHKGLVRCSHRSAGKDIGLIVHLSASTALTPNGNTKTLVGTVEEGI
KHGADCVSVHVNLGDPNERLMLADLGRVAEACDNWHIPLLAMMYARGPQIQDGFAKNV
VAHCARVGVELGADIVKVPYTGDVDSFAEVVASCCVPVVIAGGERMESTRQILQMVHD
SIKAGGAGISVGRNVFQHPSRVNLVKALRAIVHENASVDQAITMVGE"
misc_feature complement(411367..412137)
/locus_tag="Ddes_0338"
/note="DhnA-type fructose-1,6-bisphosphate aldolase and
related enzymes [Carbohydrate transport and metabolism];
Region: FbaB; COG1830"
/db_xref="CDD:32015"
misc_feature complement(411385..412080)
/locus_tag="Ddes_0338"
/note="Class I fructose-1,6-bisphosphate (FBP) aldolases
of the archaeal type (DhnA homologs); Region: DhnA;
cd00958"
/db_xref="CDD:188645"
misc_feature complement(order(411412..411420,411478..411486,
411550..411552,411559..411561))
/locus_tag="Ddes_0338"
/note="putative active site; other site"
/db_xref="CDD:188645"
misc_feature complement(411559..411561)
/locus_tag="Ddes_0338"
/note="catalytic residue [active]"
/db_xref="CDD:188645"
gene 413018..414019
/locus_tag="Ddes_0339"
/db_xref="GeneID:7283996"
CDS 413018..414019
/locus_tag="Ddes_0339"
/EC_number="3.5.99.7"
/inference="protein motif:TFAM:TIGR01275"
/note="catalyzes the formation of pyruvate from
D-cysteine"
/codon_start=1
/transl_table=11
/product="D-cysteine desulfhydrase"
/protein_id="YP_002478931.1"
/db_xref="GI:220903619"
/db_xref="InterPro:IPR001926"
/db_xref="InterPro:IPR005966"
/db_xref="GeneID:7283996"
/translation="MNLSKFPRRGYVKEATPLEFLPAFSKALGGKVNVWIKRDDLLPG
TSGGNKTRKLDFAIADALAKGADTIITCGAVQSNHCRLTLAWSVKEGLDCHLILEERV
AGSYNPDASGNNFLFRLLGVKSTTVVPGGSPMMQEMEKLAEKLRAEGRKPYIIPGGAS
NAIGALGYVQCTQEIMQQMFDRGLDFDHMVVPSGSAGTHAGVLLGMLGCNMNIPVTGI
GVNRKKPVQEEAVYSLMQETAGLLGVPTPLPREAVVAYDDYVGPGYSLPTTAMVEAVR
LLASTESILLDPVYSGKAMSGLIDLVRKGHFAAGSNVLFLHTGGSPALYAYLDEFRQ"
misc_feature 413018..414016
/locus_tag="Ddes_0339"
/note="D-cysteine desulfhydrase; Validated; Region:
PRK03910"
/db_xref="CDD:179673"
misc_feature 413063..413977
/locus_tag="Ddes_0339"
/note="Tryptophan synthase beta superfamily (fold type
II); this family of pyridoxal phosphate (PLP)-dependent
enzymes catalyzes beta-replacement and beta-elimination
reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan...; Region: Trp-synth-beta_II; cl00342"
/db_xref="CDD:213095"
misc_feature order(413162..413167,413249..413251,413597..413611,
413882..413884,413969..413974)
/locus_tag="Ddes_0339"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:107202"
misc_feature 413165..413167
/locus_tag="Ddes_0339"
/note="catalytic residue [active]"
/db_xref="CDD:107202"
gene 414091..415494
/locus_tag="Ddes_0340"
/db_xref="GeneID:7283997"
CDS 414091..415494
/locus_tag="Ddes_0340"
/inference="protein motif:PFAM:PF03553"
/note="PFAM: Na+/H+ antiporter NhaC;
KEGG: dvl:Dvul_0605 Na+/H+ antiporter NhaC"
/codon_start=1
/transl_table=11
/product="Na+/H+ antiporter NhaC"
/protein_id="YP_002478932.1"
/db_xref="GI:220903620"
/db_xref="InterPro:IPR004770"
/db_xref="InterPro:IPR010916"
/db_xref="GeneID:7283997"
/translation="MQNDKLKMYGGIWGGLVPLAILVVGLVWLSVAGRGGTKPFWACA
WLALAVGLFFARSKEEYCKAAMRGIGDKTGIVIVTAWLFAGVFGKLMAAGGLVDGLLW
LGMTTGAQGAVFTLLVFAAAMLFALGTGTSTGTCIALTPVLYPAGYFLGADPAMLGLA
ILSGAAFGDNLAPISDTTIVSAYTQGATMRDVVRSRFPLCIVAAAFTALVFMIFGGGG
ETVALPEIQANLNPSGIFMLVALIVVVVAALSGRHIIESLIYGNVTAALVGMLIGTLK
PGDIFGIPAKAGASTGIIQSGIDGVVGAIIFAILILAVTQILVECGIMTKILEFAHKS
VVSTVRQAELFIVGVTILASIPISANAPAELLVGPSLVRPIGEKFNLAPARRANLMDC
AVCTIFFILPWHIVVAAWYGAMVSAAESYGIAAPPISTALYNPYSWALLVVLIFSAVT
GWNRRYATPEDAAPEAA"
misc_feature 414136..415446
/locus_tag="Ddes_0340"
/note="Na+/H+ antiporter [Energy production and
conversion]; Region: NhaC; COG1757"
/db_xref="CDD:31943"
gene 415791..416444
/locus_tag="Ddes_0341"
/db_xref="GeneID:7283998"
CDS 415791..416444
/locus_tag="Ddes_0341"
/inference="protein motif:PFAM:PF00392"
/note="PFAM: regulatory protein GntR HTH; GntR domain
protein;
KEGG: dps:DP1500 transcription regulator"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002478933.1"
/db_xref="GI:220903621"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR011711"
/db_xref="GeneID:7283998"
/translation="MSHVQTYSAQAIDYIKQCLLDGTLMPGDPIRETEIAEHLGISRG
PVREALQTLLQQGLVTGLPQKAKHIRHLTAQEIEDSYCLGGTLEGACIVQSMDKWDDA
AVAEVKTILDEMARQSRSATGLSSMSVVDEAFHDALLSRCSNRLMVSTARNSCAHISK
FLYYKSWDTLFSPQEFYERHTLIYDTLCSRDLQRIERVLREHYAESGRRLGLQCGQR"
misc_feature 415818..>415937
/locus_tag="Ddes_0341"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature 415827..416417
/locus_tag="Ddes_0341"
/note="phosphonate utilization associated transcriptional
regulator; Region: phnR_burk; TIGR03338"
/db_xref="CDD:132381"
misc_feature order(415881..415883,415884..415889,415911..415925,
415929..415934)
/locus_tag="Ddes_0341"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 416025..416396
/locus_tag="Ddes_0341"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene complement(416741..417784)
/locus_tag="Ddes_0342"
/db_xref="GeneID:7283999"
CDS complement(416741..417784)
/locus_tag="Ddes_0342"
/inference="protein motif:PFAM:PF01368"
/note="PFAM: phosphoesterase RecJ domain protein;
KEGG: lip:LI0703 exopolyphosphatase-like protein"
/codon_start=1
/transl_table=11
/product="phosphoesterase RecJ domain-containing protein"
/protein_id="YP_002478934.1"
/db_xref="GI:220903622"
/db_xref="InterPro:IPR001667"
/db_xref="GeneID:7283999"
/translation="MLPTAELVANMKQWRQSLDKEDRWCILINADPDALASALALRRI
LLPRVHNADIARVNEVTRPDNLAMIRYLRIPVRMWQAEKADQYNRFAIVDSQPHHHKA
FHGVVFDCVIDHHPLPSGTDESPYSSDAYCDIRPGLGATSTMMTRYMQGLRMRPGPRL
ATALLYGIRTDTGAFERSGDEDDFRAYQWLSRHADNNLLRRIVRSEYLRDWLPLFSRA
FRSLTDCRGSGAFAWLNEVNSADLLVAVADFFTRVHGLKWIAVSGIVGKTVIVIFRGD
GGRDIGRLADACFYDVGQAGGHRNMGRAEFPLAAVPENVKVTDFVLKRLQTRKLRRAT
SPAAEDKGSPRTP"
misc_feature complement(416792..417634)
/locus_tag="Ddes_0342"
/note="Exopolyphosphatase-related proteins [General
function prediction only]; Region: COG0618"
/db_xref="CDD:30963"
misc_feature complement(417281..>417454)
/locus_tag="Ddes_0342"
/note="DHH family; Region: DHH; pfam01368"
/db_xref="CDD:201752"
gene complement(417862..418638)
/locus_tag="Ddes_0343"
/db_xref="GeneID:7284000"
CDS complement(417862..418638)
/locus_tag="Ddes_0343"
/inference="similar to AA sequence:KEGG:Dvul_2481"
/note="KEGG: dvl:Dvul_2481 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478935.1"
/db_xref="GI:220903623"
/db_xref="GeneID:7284000"
/translation="MPAGVAENARFLAERVDEVALCLFESSACLQYDSGDLPPDLAAL
PLRWHAHLPVDLPWSRGPAVRQASPARRAACTAAAVIARLMALVPGLVPRVAVLHPPE
GPPDLQRTLLADFAEHWRNGADSPEAPPALRHIPLLLENVAHSDVACLGKNFLHEHGL
GLCLDVGHLLGYAQKKLLHSALPSQAGLLHWSAPGKGDQHLPLTALTPSQRRIARRIM
ADAPSTATHLVEVFKWEGLAASLPVLSALATGETPDVSWG"
gene 418658..418843
/locus_tag="Ddes_0344"
/db_xref="GeneID:7284001"
CDS 418658..418843
/locus_tag="Ddes_0344"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478936.1"
/db_xref="GI:220903624"
/db_xref="GeneID:7284001"
/translation="MRPARGCPARKAVGVSAGDGAGGAQGGGLVENTVLQSVFRNRSR
RTPVNSPAETGPVQYPF"
gene complement(418840..421752)
/locus_tag="Ddes_0345"
/db_xref="GeneID:7284002"
CDS complement(418840..421752)
/locus_tag="Ddes_0345"
/inference="protein motif:PFAM:PF08367"
/note="PFAM: peptidase M16 domain protein; Peptidase M16C
associated domain protein;
KEGG: dvl:Dvul_2044 peptidase M16C associated
domain-containing protein"
/codon_start=1
/transl_table=11
/product="peptidase M16C associated domain-containing
protein"
/protein_id="YP_002478937.1"
/db_xref="GI:220903625"
/db_xref="InterPro:IPR007863"
/db_xref="InterPro:IPR011765"
/db_xref="InterPro:IPR013578"
/db_xref="GeneID:7284002"
/translation="MNNHGFTLITEQQLREVDGTARLWRHEATGAQMLSISNTDENKC
FGVSFRTPPTDSTGVAHILEHSVLCGSDKYPVKEPFVELLKGSLQTFLNAFTFPDKTC
YPVASCNLRDFYNLIDVYIDAVFHPRINEDIFKQEGWHVDAPSADGPWAYKGVVYNEM
KGVYSSPDSVLAEQSQQSLFPDTLYSLDSGGNPQCIPDLTYEAFCDFHSRYYHPSNAR
FFFWGDDPEAERLRLAGQALEKYTARPVDSTVPLQKRLDTPRHIEVPYAASEGEKRAL
FTVNWLLGERGDVDQALLMEMLEHILEGLPGSPLRKALIASGLGEDTTGCGLETDLRQ
MYYSTGLKGVAPRDVPAAEVLIFETLAQLAEEGIPAAAVEAAVNTVEFAYRENNSGRF
PRGLSAMIQSLSTWLYDGDPLAPLAWEAPLAALKKRIQAGEPVFEQAIKDWFLNNNHR
ATVVLLPDTGLGKARDEAEKARVDAVQAAAGPEERAAVAADTRRLEEVQSAPDSPEAL
ATIPALGLEDLPAHNAPIPRNVVEVPEAILSHELPTQGVAYTTLLLPLDNVPDRLVPL
LPLFARSLTEMGTARRDFTELGALMAAKTGGVGADPLLGTVRESRKTVSYLAVSGKTV
YDKLPDLFNIIHEILLEPLADKKVIEARVGQMLLETKARLENALQSAGHAAVSARLRA
RYTGAGALAERTTGLSYLESVRAMLSRMEKEPQTVMADLEELRNRIVARPGAVFDCTA
EASGLSQAESHARRLLQALPQLRPGAAGGIGETPMRLPAAEAFIAPAQINYVGKAANI
YDQGYIYHGSASVILRYLRMGYLWERVRVRGGAYGAFCNLDRLGGTLVCASYRDPNVE
ATLEAFDGMADFLRGFTPDKAQLTQAIVGAIGDLDSYLLPDAKGAQSLARWLTNDTDA
ARALMREEILSTTEKHFRDFAEVLAEAAAKGHICVLGGSRAEAAAAEHGWESSRLI"
misc_feature complement(418870..421743)
/locus_tag="Ddes_0345"
/note="Predicted Zn-dependent peptidases, insulinase-like
[General function prediction only]; Region: COG1026"
/db_xref="CDD:31229"
misc_feature complement(421231..421596)
/locus_tag="Ddes_0345"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature complement(420664..421161)
/locus_tag="Ddes_0345"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
misc_feature complement(419653..420390)
/locus_tag="Ddes_0345"
/note="Peptidase M16C associated; Region: M16C_assoc;
pfam08367"
/db_xref="CDD:116948"
gene 422063..422839
/gene="rpsB"
/locus_tag="Ddes_0346"
/db_xref="GeneID:7284003"
CDS 422063..422839
/gene="rpsB"
/locus_tag="Ddes_0346"
/inference="protein motif:PFAM:PF00318"
/note="one of the last subunits in the assembly of the 30S
subunit; absence of S2 does not inhibit assembly but
results in an inactive subunit"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S2"
/protein_id="YP_002478938.1"
/db_xref="GI:220903626"
/db_xref="InterPro:IPR001865"
/db_xref="InterPro:IPR005706"
/db_xref="GeneID:7284003"
/translation="MAYVSMKQMLETGVHFGHQTRRWNPKMRPYIFGARNGIHIIDLQ
QTVKLFRIAHDKVVDIVAKGGKVLFIGTKRQAQEAVAAEAGRAGQFFVTNRWMGGTLT
NFVTIQKSVDRLKKLESMFADGSINRYQKKEILLLERELAKLEETLGGIKNMDRLPQI
AFIIDPHREDIAVKECRKLGIPIIAVTDTNCDPDVIDYIIPGNDDAIRAIKLFVAAFA
EACMEGEAMGKDHKGETANAEEAMQKAAAVEAAAEAAPAQ"
misc_feature 422087..422731
/gene="rpsB"
/locus_tag="Ddes_0346"
/note="Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli RPS2
is essential for the binding of...; Region: RPS2; cd01425"
/db_xref="CDD:100106"
misc_feature order(422135..422140,422165..422173,422345..422347,
422351..422359,422366..422371,422585..422587,
422594..422596)
/gene="rpsB"
/locus_tag="Ddes_0346"
/note="rRNA interaction site [nucleotide binding]; other
site"
/db_xref="CDD:100106"
misc_feature order(422591..422596,422600..422602,422642..422653)
/gene="rpsB"
/locus_tag="Ddes_0346"
/note="S8 interaction site; other site"
/db_xref="CDD:100106"
misc_feature 422696..422713
/gene="rpsB"
/locus_tag="Ddes_0346"
/note="putative laminin-1 binding site; other site"
/db_xref="CDD:100106"
gene 422978..423838
/gene="tsf"
/locus_tag="Ddes_0347"
/db_xref="GeneID:7284004"
CDS 422978..423838
/gene="tsf"
/locus_tag="Ddes_0347"
/inference="protein motif:TFAM:TIGR00116"
/note="EF-Ts; functions during elongation stage of protein
translation; forms a dimer; associates with EF-Tu-GDP
complex and promotes exchange of GDP to GTP resulting in
regeneration of the active form of EF-Tu"
/codon_start=1
/transl_table=11
/product="elongation factor Ts"
/protein_id="YP_002478939.1"
/db_xref="GI:220903627"
/db_xref="InterPro:IPR000449"
/db_xref="InterPro:IPR001816"
/db_xref="InterPro:IPR014039"
/db_xref="GeneID:7284004"
/translation="MAAITAQMVKELREMTGAGMMDCKKALVEVEGDLEKAVDWLRQK
GMAKAAKKSGRATSEGLVTVALSDDGKTVAMASLLCETDFVARGDQFQDMAAKVAKSV
LDNAPADAAALEALMGEEVTQLIASVGENMQLGRFARHVKPCESSLVGQYIHANGKIG
VLVFLTCGKAESVDKPEVQELAKNIAMQVAAASPMALDAASLDQAAVEREREVYRQKA
LEEGKPANIVDKIADGAVKKFQKEVCLMEQPYIRDDKKTITDVVRETGKAVGDEITVT
GFERIQLAAE"
misc_feature 422978..423826
/gene="tsf"
/locus_tag="Ddes_0347"
/note="elongation factor Ts; Provisional; Region: tsf;
PRK09377"
/db_xref="CDD:181810"
misc_feature 422987..423100
/gene="tsf"
/locus_tag="Ddes_0347"
/note="UBA/TS-N domain; Region: UBA; pfam00627"
/db_xref="CDD:201355"
misc_feature 423146..>423274
/gene="tsf"
/locus_tag="Ddes_0347"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
misc_feature 423419..423826
/gene="tsf"
/locus_tag="Ddes_0347"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
gene 424121..425704
/locus_tag="Ddes_0348"
/db_xref="GeneID:7284005"
CDS 424121..425704
/locus_tag="Ddes_0348"
/inference="protein motif:PFAM:PF03741"
/note="PFAM: CBS domain containing protein;
transporter-associated region; Integral membrane protein
TerC;
KEGG: rru:Rru_A2870 integral membrane protein TerC"
/codon_start=1
/transl_table=11
/product="integral membrane protein TerC"
/protein_id="YP_002478940.1"
/db_xref="GI:220903628"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR005170"
/db_xref="InterPro:IPR005496"
/db_xref="GeneID:7284005"
/translation="MFDFSWVTHLSAWAGLGTLVLLEVVLGVDNLVFISILVGRLPGE
RKRQAFLVGLGLALLMRMLLLTVMARLATLTTPLFELGGHGFAARDLILMAGGVFLLL
KGTMELHDRLEGHSGRYAGDSGHHADFWQVIFQIVVLDAVFSLDSIITAVGMVEHVTI
MMLAVVIAMGIMLLAAAPLLNFMERHPTVIVLCLGFLLMIGLSLLADGLGFHIPKGYM
YAAIVFSIMVEACNQWALRNRRRRFSMRDMRESTARVILNILGGNAPGQGDAQLDAAA
LAGGEKEQLFAPKERDMLARVIRLGGRTARFIMIPRQRVNWLDSNADRKTVNRYAASS
RLAWLPVLRRDTDEVLGVVHPGDILERGDCSPDGKWDLKSYIRPAPTIFEHTPLHVIM
EDFRTHPTPLSFVRDEYGSVVGVITPAELLSVLAGQMGDMPAGPEACRRPDGSWVMPG
RLTVDLFASWLGISLPKRLSSATLAGFILERLGRIPEKGERLHYQGWELEITRMDKRR
IDEVRAVRMLTPPGKGRKK"
misc_feature 424121..424819
/locus_tag="Ddes_0348"
/note="Membrane protein TerC, possibly involved in
tellurium resistance [Inorganic ion transport and
metabolism]; Region: TerC; COG0861"
/db_xref="CDD:31202"
misc_feature <424961..425671
/locus_tag="Ddes_0348"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:31445"
misc_feature 425060..425386
/locus_tag="Ddes_0348"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature 425438..425668
/locus_tag="Ddes_0348"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(426051..427808)
/locus_tag="Ddes_0349"
/db_xref="GeneID:7284006"
CDS complement(426051..427808)
/locus_tag="Ddes_0349"
/inference="protein motif:PFAM:PF00015"
/note="PFAM: chemotaxis sensory transducer;
KEGG: dvl:Dvul_0942 methyl-accepting chemotaxis sensory
transducer"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_002478941.1"
/db_xref="GI:220903629"
/db_xref="InterPro:IPR004089"
/db_xref="GeneID:7284006"
/translation="MKLQAKLLAGFLLSALITLSMGIFADSRLHDMSQADTFLYTRSA
EPMGDLINMSVYFQRIRLDLLTFVTTDEDAVKQRVRTEIPQYRAIIDSGTTKVESSLI
SAEAQKILAEYKLRRQDFRTMTDDVMSLASDGRQAQAYALLTGKGWEISTAYQNAIGD
LVASKLEQGRLLAQKNAELADSSSYLLYVALGAGILLSIAMGILLTRNIMRQLGEDPG
YLAEVAGEIAHGNLNVTFRPQKTAGGVYHVMQNMVGTMKEKIAEAEEKSAEAARQADQ
ANIATQEAHAAKAAAERAKAEGMLQAAQQLEEVVGILTSASEELSAQIEQSSRGADEQ
SQRVSETATAMEEMNATVREVASNAGHASEMSDQAHLQAQEGAAIVSRVVQGINEVSR
QSMEIKQDMDTLSHQAEGIGQIMSVISDIADQTNLLALNAAIEAARAGEAGRGFAVVA
DEVRKLAEKTMTATHEVGQVISGIQEGTRKSVAGVDVSIGTIQGATSLANQSGETLHS
IVALVDQTNDQVRSIATASEEQSAASDEINRSVEQVAAISSQTATAMAQAAQATAELA
RQSQVLQSLINDMKAEGSR"
misc_feature complement(427269..427808)
/locus_tag="Ddes_0349"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
sig_peptide complement(427731..427808)
/locus_tag="Ddes_0349"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.997 at
residue 26"
misc_feature complement(<427101..427250)
/locus_tag="Ddes_0349"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature complement(426177..426854)
/locus_tag="Ddes_0349"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(426177..426773)
/locus_tag="Ddes_0349"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(426177..426182,426189..426191,
426198..426203,426210..426212,426219..426224,
426228..426233,426240..426245,426249..426254,
426261..426263,426270..426275,426282..426284,
426291..426296,426303..426308,426312..426317,
426324..426326,426333..426338,426345..426347,
426354..426359,426396..426401,426408..426413,
426417..426422,426429..426434,426441..426443,
426450..426455,426462..426464,426471..426473,
426483..426485,426504..426506,426513..426515,
426525..426527,426534..426539,426546..426548,
426555..426557,426564..426569,426576..426581,
426588..426590,426597..426602,426606..426608,
426618..426623,426627..426632,426639..426641,
426648..426653,426660..426665,426672..426674,
426681..426686,426693..426695,426702..426707,
426711..426716,426723..426725,426732..426737,
426744..426749))
/locus_tag="Ddes_0349"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(426438..426539)
/locus_tag="Ddes_0349"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(428010..429227)
/locus_tag="Ddes_0350"
/db_xref="GeneID:7284007"
CDS complement(428010..429227)
/locus_tag="Ddes_0350"
/inference="protein motif:PFAM:PF00300"
/note="PFAM: Phosphoglycerate mutase;
6-phosphofructo-2-kinase;
KEGG: lip:LI0094 fructose-2,6-bisphosphatase"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_002478942.1"
/db_xref="GI:220903630"
/db_xref="InterPro:IPR001345"
/db_xref="InterPro:IPR003094"
/db_xref="InterPro:IPR013078"
/db_xref="InterPro:IPR013079"
/db_xref="GeneID:7284007"
/translation="MQKLYVAMVGLPARGKSTLAKRIRDGLLAEGIQARLFNNGDMRR
ALMGAESTNPDFYNPANESGREAREMICRRNMELARTWLAAEGEVAILDATNVSRARR
ILIEKTLTDHPVLFVECVNEDQLLLKACIRRKATLPEYAAYSEDEALQSFMKRISYYE
AIYEPLEEEKFWLCVDSTANRILGERPCEGSPYYPAIREIVVSAWVHCLYLARHGQTE
FNVRGRIGGDPPLTARGRSQAKALARHMRHKDINWVFTSTRLRSHETATPLLAGHPGA
HVMAFKEFDEIWAGDCEGMLYSEIRAKMPGVTAGRNASKYTYAYPNGESYAMLRERVQ
RGLRRALFLAGDTPLVIVGHQAVNRVLLSLFLQQRSEDVPYVYIPQNQYYHISMTPRR
KVFERIPYQEEIF"
misc_feature complement(428721..429221)
/locus_tag="Ddes_0350"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(order(429174..429185,429198..429200))
/locus_tag="Ddes_0350"
/note="active site"
/db_xref="CDD:73295"
misc_feature complement(428091..428603)
/locus_tag="Ddes_0350"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(428163..428168,428445..428447,
428586..428591))
/locus_tag="Ddes_0350"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene 429305..429997
/locus_tag="Ddes_0351"
/db_xref="GeneID:7284008"
CDS 429305..429997
/locus_tag="Ddes_0351"
/inference="protein motif:TFAM:TIGR00035"
/note="TIGRFAM: aspartate racemase;
PFAM: Asp/Glu/hydantoin racemase;
KEGG: csa:Csal_0199 aspartate racemase"
/codon_start=1
/transl_table=11
/product="aspartate racemase"
/protein_id="YP_002478943.1"
/db_xref="GI:220903631"
/db_xref="InterPro:IPR001920"
/db_xref="InterPro:IPR004380"
/db_xref="InterPro:IPR015942"
/db_xref="GeneID:7284008"
/translation="MKVIGLLGGMSWESTVSYYQIINRVVRQRLGGLHSAKCLLYSVD
FAEIEACQAEGRWDEAAAALAGGARRLERGGADFFLICTNTMHKVAPQVAAAVQIPLL
HLAGATADELLRRGMTRAALLGTRYTMEEDFYSGVLRQRGIEVLVPDAQDRGMINDVI
FQELCLGRIEDGSRRKMLTVIEGLQARGAQGVVLGCTEIGLLVQPEHTDVPLLDTTLL
HATAAAEMALGR"
misc_feature 429305..429937
/locus_tag="Ddes_0351"
/note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race;
cl00518"
/db_xref="CDD:212232"
gene complement(430796..431992)
/locus_tag="Ddes_0352"
/db_xref="GeneID:7284009"
CDS complement(430796..431992)
/locus_tag="Ddes_0352"
/inference="protein motif:TFAM:TIGR00234"
/note="catalyzes the formation of tyrosyl-tRNA(Tyr) from
tyrosine and tRNA(Tyr)"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_002478944.1"
/db_xref="GI:220903632"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002305"
/db_xref="InterPro:IPR002307"
/db_xref="InterPro:IPR002942"
/db_xref="GeneID:7284009"
/translation="MTDIDRQMATIKRGVAELIDENELRKKILRGAPLRIKVGFDPTA
PDLHLGHTVVMHKMRHFQELGHHVVFLIGDFTGRIGDPSGRSETRPPLTEEQVLANAE
TYKKQVFKILDPAKTEVAFNSAWLGKLDATGFIKLASSYTVARMMERDDFEKRFREQR
PISIHEFLYPLCQGYDSVCLKTDVEMGGTDQKFNLLVGRNLQAHYGIESQCILTMPLL
EGTDGVRKMSKSYGNYIGIDEAPSEIFGKIMAISDDLMWRYYELLSTKSLEDIATLKT
DVATGTVHPKAAKETLAHEMVSRYHSRKDADEAQQGFNAVFADGGVPDEMPEHQCAHG
EDSTPPVFLEAAGLVKSRGEAKRLMKEGALSIDGQRCDDAITPLSAGEYVIKLGKKRF
LKLLVS"
misc_feature complement(430802..431986)
/locus_tag="Ddes_0352"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:180311"
misc_feature complement(431102..431893)
/locus_tag="Ddes_0352"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature complement(order(431306..431317,431339..431344,
431420..431422,431429..431434,431438..431440,
431465..431467,431474..431476,431486..431488,
431840..431845,431849..431851,431870..431878,
431882..431884))
/locus_tag="Ddes_0352"
/note="active site"
/db_xref="CDD:173902"
misc_feature complement(431840..431851)
/locus_tag="Ddes_0352"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature complement(order(431477..431482,431489..431494,
431498..431500,431552..431557,431561..431572,
431576..431581,431585..431593,431597..431602,
431756..431761,431768..431770))
/locus_tag="Ddes_0352"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature complement(431303..431317)
/locus_tag="Ddes_0352"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature complement(430802..430972)
/locus_tag="Ddes_0352"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(430856..430858,430862..430885,
430904..430906,430910..430915,430922..430927,
430931..430936,430940..430945))
/locus_tag="Ddes_0352"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene complement(432168..432416)
/locus_tag="Ddes_0353"
/db_xref="GeneID:7284010"
CDS complement(432168..432416)
/locus_tag="Ddes_0353"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478945.1"
/db_xref="GI:220903633"
/db_xref="GeneID:7284010"
/translation="MEISGLNKFNAFAFPLPGKDDSGSTPAAVQDVVNLSTPQMLEDH
EVDAVMDETLNMIAHDNVAALSVHGGLSQSRVFALLGM"
gene complement(432931..433836)
/locus_tag="Ddes_0354"
/db_xref="GeneID:7284011"
CDS complement(432931..433836)
/locus_tag="Ddes_0354"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478946.1"
/db_xref="GI:220903634"
/db_xref="GeneID:7284011"
/translation="MTAPTSYCLWNSNTTEAFSRAMRQRVTVRIKCCLPREGKPTDIV
MHGRLRNVEGREVLFVPRHAEVQQGKSKAEENTCEFFFSLEQREESGISRMGYQGPGM
VLEEVKDEKGDLRSLRLRLARSCAVRQMRRHKRVPWNEDRSRLAGITPLDNPPTTRAE
LKDLLAQYYASSHPNPLPLINLSAGGACACLPDDISAITLASTYLFFVVPNKAAGSDP
PYIFLSKKMGTCKSLCDQGTALRLLFTEELDWFSQSPHLKWDDILATGSERLQACLEL
YDDTEDEEDEAPAEITSASKSRLTA"
gene complement(434280..434558)
/locus_tag="Ddes_0355"
/db_xref="GeneID:7284012"
CDS complement(434280..434558)
/locus_tag="Ddes_0355"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478947.1"
/db_xref="GI:220903635"
/db_xref="GeneID:7284012"
/translation="MQGASLAGTAEKPLRQTGFLISSAARCKIRYNNIATFTKYSDTP
GICVHHSSAMQLRALPAGAQVKGNTADSVCCQPPGERFKNSEMHIRSI"
gene complement(434639..435370)
/locus_tag="Ddes_0356"
/db_xref="GeneID:7284013"
CDS complement(434639..435370)
/locus_tag="Ddes_0356"
/inference="similar to AA sequence:KEGG:Dvul_2832"
/note="KEGG: dvl:Dvul_2832 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478948.1"
/db_xref="GI:220903636"
/db_xref="GeneID:7284013"
/translation="MLVHAKAPFIRGCLLLISFLILFAIMLMPIMKDELGNHVTGLQY
ADNVFNELSKGSSYFIPGVRENLKSVEGKDVQITVKLKKGDLAPLAAMILEKSGATNV
SAEDGKVSFSGNLGLILASATDDSDNLYNNDAAAVAQKYDGEPALKVASAWWYVLSPT
IKELQKQHKIVESQVVDHVLRRAIEPGNNFYSVPAAKVSEHLVLMSAMLIFYVLYTLW
YGFAIFELFEGLGLAMTKSKVKQES"
sig_peptide complement(435272..435370)
/locus_tag="Ddes_0356"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.623) with cleavage site probability 0.594 at
residue 33"
gene complement(435373..436635)
/locus_tag="Ddes_0357"
/db_xref="GeneID:7284014"
CDS complement(435373..436635)
/locus_tag="Ddes_0357"
/inference="protein motif:PFAM:PF01925"
/note="PFAM: protein of unknown function DUF81;
KEGG: dvl:Dvul_2833 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478949.1"
/db_xref="GI:220903637"
/db_xref="InterPro:IPR002781"
/db_xref="GeneID:7284014"
/translation="MSFGRQVYEFLLSGSRAYAKWDLEVSTSILKNRKKLLLLLALAV
PILAGCLAEAYEYHEMLGGKTAYAPAFYTTNIFLASIAVGLAAGLITGCIGAGGGFII
TPALMAVGVKGILAVGTDLFHIFAKAIMGTTVHKKLGNVSGKLAVAFLCGSVVGTFIG
GAINKGLYNADPLLSELFISSIYAVLLGFLGFYALFDFLKSSRGGAAASQDAHGGSSG
MTGISVKLQGLRVPPMISFDEDLVPGGRRISGWIVAAGGVFVGLLAAIMGVGGGFVTF
PMFVYIFGVSSMTTVGTDILQIIFTAGFAAIGQYAIYGYVFYTLAIGMLLGSLLGIQV
GALTTKVVKGIHIRGFYAISIIAGFINRAATLPKKLVEMEVLNWSPKVVGIIESVGNV
VFWVVVAFFGIWVFSKFFANIGKLRGEA"
misc_feature complement(435565..436326)
/locus_tag="Ddes_0357"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
misc_feature complement(435565..436326)
/locus_tag="Ddes_0357"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
gene complement(437016..437792)
/locus_tag="Ddes_0358"
/db_xref="GeneID:7284015"
CDS complement(437016..437792)
/locus_tag="Ddes_0358"
/inference="protein motif:PFAM:PF03692"
/note="PFAM: protein of unknown function UPF0153;
KEGG: dvl:Dvul_2824 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478950.1"
/db_xref="GI:220903638"
/db_xref="InterPro:IPR005358"
/db_xref="GeneID:7284015"
/translation="MSNDASREFLDTLPELGPAETFCFDCHPGVPCFNRCCAELTLPL
TPYDILRLRRHMGMTSEDFLATFTTMRSFPDTGFPLPMLRMQDGPGEPCPFVSPAGCS
VYEDRPGACRYYPIGRGTKMAADGVAERFFVVREAHCHGFDEGVSRTPHQWMENEELQ
PFNRANDRYMRLMALVRATGKPLEPRMATMTVLCLFQLDRFRELVTAMKIFSHVDTSE
ERKAAVMQDSPEGDVAALDFALDWLELVIFGQSEGLAKKQ"
misc_feature complement(437448..437726)
/locus_tag="Ddes_0358"
/note="Flagellin N-methylase; Region: FliB; pfam03692"
/db_xref="CDD:112504"
gene 437994..438287
/locus_tag="Ddes_0359"
/db_xref="GeneID:7284016"
CDS 437994..438287
/locus_tag="Ddes_0359"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478951.1"
/db_xref="GI:220903639"
/db_xref="GeneID:7284016"
/translation="MKQRNAFTLWDGLYCRNGLCRAATGGFCSLAGSVTVPGRALGAS
RKTYGVRVSGVKAARDGTVWIRLPPEAVICNGYVCLRLLRGTFGPPLPAAFQG"
gene complement(438295..439188)
/gene="hisG"
/locus_tag="Ddes_0360"
/db_xref="GeneID:7284017"
CDS complement(438295..439188)
/gene="hisG"
/locus_tag="Ddes_0360"
/EC_number="2.4.2.17"
/inference="protein motif:TFAM:TIGR03455"
/note="long form of enzyme; catalyzes the formation of
N'-5'-phosphoribosyl-ATP from phosphoribosyl
pyrophosphate; crucial role in histidine biosynthesis;
forms active dimers and inactive hexamers which is
dependent on concentration of substrates and inhibitors"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase"
/protein_id="YP_002478952.1"
/db_xref="GI:220903640"
/db_xref="InterPro:IPR013115"
/db_xref="InterPro:IPR013820"
/db_xref="GeneID:7284017"
/translation="MSADIKPIIKLGVPKGSLEEATINLFERAGWKIRKHTRNYFPDI
NDPEITASLCRVQEIGGYIEAGVLDVGITGLDWLTERNHEDKVVRVSDLVYSKTSNRP
CRWVLAVAGDAPYQCAADLAGKRIATELEGLTRRYFEQAGVPVNVFYSWGATEAKVVE
GLADGIVEVTETGTTIRAHGLRIIDDVMLSYPVLIANRDAWADPAKRAKIEQLDLLLQ
GALRAENLVALKMNAPAGNLAFILEMLPSLNSPTVSPLRDEKWLSVESVVQVDVVRDL
IPRLREAGAEGIIEYALNKVI"
misc_feature complement(438298..439164)
/gene="hisG"
/locus_tag="Ddes_0360"
/note="ATP phosphoribosyltransferase; Reviewed; Region:
hisG; PRK00489"
/db_xref="CDD:179047"
misc_feature complement(438601..439164)
/gene="hisG"
/locus_tag="Ddes_0360"
/note="ATP phosphoribosyltransferase; Region: hisG;
TIGR00070"
/db_xref="CDD:211544"
misc_feature complement(438298..438600)
/gene="hisG"
/locus_tag="Ddes_0360"
/note="ATP phosphoribosyltransferase, C-terminal domain;
Region: HisG_C-term; TIGR03455"
/db_xref="CDD:132496"
gene complement(439200..439613)
/gene="hisI"
/locus_tag="Ddes_0361"
/db_xref="GeneID:7284018"
CDS complement(439200..439613)
/gene="hisI"
/locus_tag="Ddes_0361"
/EC_number="3.5.4.19"
/inference="protein motif:PRIAM:3.5.4.19"
/note="PR-AMP cyclohydrolase; functions in histidine
biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP
to
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]imidazole-4-
carboxyamide during the histidine biosynthesis pathway;
binds zinc and magnesium; forms homodimers"
/codon_start=1
/transl_table=11
/product="phosphoribosyl-AMP cyclohydrolase"
/protein_id="YP_002478953.1"
/db_xref="GI:220903641"
/db_xref="InterPro:IPR002496"
/db_xref="GeneID:7284018"
/translation="MTAPEPQSSAAPGEAFTPDFSKGLLPAIAQDHASGEVLMLAYMN
EEAWRKTLETGQAHYWSRSREKIWHKGGTSGHIQKVLAVRLDCDSDTVLLFVDQVGGA
ACHTGRRTCFYREWKDGAVSECAPMVFDPQKVYGV"
misc_feature complement(439206..439580)
/gene="hisI"
/locus_tag="Ddes_0361"
/note="phosphoribosyl-AMP cyclohydrolase; Reviewed;
Region: hisI; PRK00051"
/db_xref="CDD:178825"
gene 439975..441663
/locus_tag="Ddes_0362"
/db_xref="GeneID:7284019"
CDS 439975..441663
/locus_tag="Ddes_0362"
/inference="protein motif:PFAM:PF00270"
/note="PFAM: helicase domain protein; DEAD/DEAH box
helicase domain protein;
SMART: DEAD-like helicases;
KEGG: dvl:Dvul_0291 DEAD/DEAH box helicase
domain-containing protein"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_002478954.1"
/db_xref="GI:220903642"
/db_xref="InterPro:IPR000629"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
/db_xref="GeneID:7284019"
/translation="MPEHQSNSTPDSSSTAVEGTSARDPEAPLEGLSVSEPEDALPRV
NLEDMPEDMRTACARAGWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLP
RLSADLKAPQALVLAPTRELAVQVEREAAVLFEGTGIVTVAVYGGVGYKKQMDALRNG
AQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIH
TCLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLL
ETENPASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQY
LVATDVAARGIDIPELSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRME
LDRIAKHYKIGLIPLPLPTDEDVAHVAGTRLTAILEGRFRKLTGLERVRVERYAALAR
ELAAEHDDEESVLLLAMLLDEAHQESLRENRFPDQSSGTAGQQGRAGSGGRGGRSSRG
SNGPRGGAEHKEEGAAEGGSRTGKRRRRSSRRRDGEQGREAAPRNAAGKTDTAE"
misc_feature 440116..440697
/locus_tag="Ddes_0362"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature 440149..440709
/locus_tag="Ddes_0362"
/note="DEAD-like helicases superfamily; Region: DEXDc;
smart00487"
/db_xref="CDD:197756"
misc_feature 440239..440253
/locus_tag="Ddes_0362"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature 440545..440556
/locus_tag="Ddes_0362"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature 440641..440649
/locus_tag="Ddes_0362"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature 440737..441075
/locus_tag="Ddes_0362"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(440839..440850,440908..440913,440986..440994)
/locus_tag="Ddes_0362"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(441010..441012,441073..441075)
/locus_tag="Ddes_0362"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 441678..442193
/locus_tag="Ddes_0363"
/db_xref="GeneID:7284020"
CDS 441678..442193
/locus_tag="Ddes_0363"
/inference="similar to AA sequence:KEGG:DVU3089"
/note="KEGG: dvu:DVU3089 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478955.1"
/db_xref="GI:220903643"
/db_xref="GeneID:7284020"
/translation="MRHMDGTPVAPEGASPETTPGDALAGTPRQALDNFAALFEDADF
TVELDYLGVGRIQFLRRRQMLLELRGLYVALWRLALARSFPQDAGQMFDTFLQEYKAG
HKDRTSAQVLVRAREYWGMLEPMGDGDFSEVARHLTSFFARTDQGDKSVNLKLVLHIR
KVYQLIFDRLI"
gene 442355..443296
/locus_tag="Ddes_0364"
/db_xref="GeneID:7284021"
CDS 442355..443296
/locus_tag="Ddes_0364"
/inference="protein motif:TFAM:TIGR00083"
/note="TIGRFAM: riboflavin biosynthesis protein RibF;
PFAM: FAD synthetase; Riboflavin kinase;
KEGG: dvl:Dvul_2486 riboflavin biosynthesis protein RibF"
/codon_start=1
/transl_table=11
/product="riboflavin biosynthesis protein RibF"
/protein_id="YP_002478956.1"
/db_xref="GI:220903644"
/db_xref="InterPro:IPR002606"
/db_xref="InterPro:IPR015864"
/db_xref="InterPro:IPR015865"
/db_xref="GeneID:7284021"
/translation="MNIAHSIEELDFSENSGLTIGNFDGVHLGHQALIRHTLDVCSGE
GLTPVVMTFWPHPRQVVMPHLGHMPLTTREERFARLEALGVRHVLELPFTHELAALDA
AGFVRAFLEPLRLRHLVVGYDFSLGRDRGGHVDVLRRLGADAGFCVEQLPPVVVDGTV
VSSTTLRKLIDEGDVREAARLLGRFHGFSGQVVHGDGRGAGLGFPTANLARPEVAIPR
AGVYATLATLATPAGSEKARPAVTCIGCKPTFGENELSVETFLLEGGGDLYGRTLRLD
FVERLRGEKRFDSVDALKLQIAADVEQARRILAAFVR"
misc_feature 442367..443284
/locus_tag="Ddes_0364"
/note="bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed; Region: PRK05627"
/db_xref="CDD:180171"
misc_feature 442406..442939
/locus_tag="Ddes_0364"
/note="FAD synthetase, N-terminal domain of the
bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
/db_xref="CDD:185679"
misc_feature order(442415..442426,442433..442435,442442..442444,
442721..442723,442811..442813,442835..442843)
/locus_tag="Ddes_0364"
/note="active site"
/db_xref="CDD:185679"
misc_feature 442895..443281
/locus_tag="Ddes_0364"
/note="Riboflavin kinase; Region: Flavokinase; pfam01687"
/db_xref="CDD:190069"
gene complement(443538..444029)
/locus_tag="Ddes_0365"
/db_xref="GeneID:7284022"
CDS complement(443538..444029)
/locus_tag="Ddes_0365"
/inference="similar to AA sequence:KEGG:DR_0094"
/note="KEGG: dra:DR_0094 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478957.1"
/db_xref="GI:220903645"
/db_xref="GeneID:7284022"
/translation="MKKLLTLVLSLCLTCIFAAGAMADSDIITASDQEKILEIAKGFG
SAELSSTSKGTPLIQGRMDGIKYAIWFSGCTDGKSCSALQFIGMWKTEDFPMAEVNKW
NAQKVYTRTYLDKDQDLTMEMDVFMRYGMTQKNLEEIFDLWKTSLRHLSEVIAAQSKK
NPS"
sig_peptide complement(443958..444029)
/locus_tag="Ddes_0365"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.997 at
residue 24"
misc_feature complement(443562..443933)
/locus_tag="Ddes_0365"
/note="Putative bacterial sensory transduction regulator;
Region: YbjN; pfam10722"
/db_xref="CDD:204547"
gene 444194..445120
/locus_tag="Ddes_0366"
/db_xref="GeneID:7284023"
CDS 444194..445120
/locus_tag="Ddes_0366"
/inference="protein motif:TFAM:TIGR01856"
/note="TIGRFAM: histidinol phosphate phosphatase HisJ
family;
PFAM: PHP domain protein;
KEGG: dvu:DVU2490 histidinol phosphatase, putative"
/codon_start=1
/transl_table=11
/product="histidinol phosphate phosphatase protein"
/protein_id="YP_002478958.1"
/db_xref="GI:220903646"
/db_xref="InterPro:IPR000834"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR010140"
/db_xref="GeneID:7284023"
/translation="MKHGLTDMRILPYSGRERATPRVVFVRALAYAQTMIRADLHNHT
LAAHGQDTVNDMYKAASKRHVDWYGLSEHSPLPPGYSCPLYKGDLNVTFPAYVEAVLA
LKDNALPGGPRVLLGMELDWLPVNMGWMESLLGRYPFDYVIGGLHFVHDVPIGSPRSW
GEGLALPERFARYEAYYEEMARLAASGFVDVVAHPDFIKVCCYDDFQDWLRQPGSLDI
VARALEAMRQQDVAMEVSSAGLRKAFHEPYPGPAIMGLAADLGLDICFGSDAHAAAET
VSHFDDLARYARSYGFSRNRIAVGRERRWLEF"
misc_feature 444305..445105
/locus_tag="Ddes_0366"
/note="histidinol-phosphatase; Provisional; Region:
PRK07328"
/db_xref="CDD:180932"
gene 445565..446379
/locus_tag="Ddes_0367"
/pseudo
/db_xref="GeneID:7284024"
gene 446382..447761
/locus_tag="Ddes_0368"
/db_xref="GeneID:7284025"
CDS 446382..447761
/locus_tag="Ddes_0368"
/inference="similar to AA sequence:KEGG:SYO3AOP1_0717"
/note="KEGG: sul:SYO3AOP1_0717 conserved hypothetical
protein, putative cytochrome"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478959.1"
/db_xref="GI:220903647"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:7284025"
/translation="MIFPILHIPGLGDGMTIALDAVLHVIISHGLAIGLMTMIILFQT
LTWMGKGEHWAKISRSLLGPTVVVITSVGAVTGVGIWFITSILAPEGIGSLIHLFFWP
WFIEWGAFTSEVILLLIYYYLWDRLAEKQPGKLAALGWGYVVMAVFSAILISGILGFM
LTPDGWPWGQDFDQAYFNPTFAPQVFLRLAAGLAIGSLLLTAWIAWRFKGTAQERGSA
LRLSGGVFLACVAVAGVSAWVYFSRVPMTYLTHWKFAVATSYMSQLPDFLPTLNAVAV
GVLCLAGLVAILRSRTASRILCIPALLLCVFMVMEFERIREFVRGPYLLPGYMYANQV
PLVEKLALDEKNENFLPRMRWVNDNGKLPPDMVAGQALFAANCGVCHTNVKGGLNNIG
IRVAGRTLDSLNAIIDITENLGPFMTPFTGSESERLLLANYIYMLAAEQGYIKTQQAH
TGRAAGEVK"
misc_feature 446433..>446924
/locus_tag="Ddes_0368"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; cl00562"
/db_xref="CDD:207109"
misc_feature 447471..447683
/locus_tag="Ddes_0368"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
misc_feature <447474..447683
/locus_tag="Ddes_0368"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
gene 447764..449371
/locus_tag="Ddes_0369"
/db_xref="GeneID:7284026"
CDS 447764..449371
/locus_tag="Ddes_0369"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: glo:Glov_1763 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478960.1"
/db_xref="GI:220903648"
/db_xref="InterPro:IPR002114"
/db_xref="InterPro:IPR009056"
/db_xref="GeneID:7284026"
/translation="MNTWTDLFLLHPLSEGWQNGLLFISFGLHLLFALLIVGTAILGF
VFFLQDWLDRDQAGQAWNSRFMHTHLGLKSLAVVLGIAPLLLVQIRYSYSFFTTTGLF
AYAWLAVIPLLIVAFLLIDAFNHSMERRAWLAFFCGVVGVGALLTVPAVFTGALALME
RQHLWAQFGQSGGQDFASMPALAPHWLLRYLHVIGAALVLGAAFQLFFSTRNNPEKAP
RLRNWIFGAILAQVLIGIPLLFTVAAELDWTIMTALMIGALAALLALWVLRPGQPAPC
AGAGTDAALRPAEAAAPRSLLWLLPLAFVAMLVGRQFIQDQAMNPAQAANDAYRAERA
KALDPFRQPALDGYAFKLKTVYDNGDTIYDQACAPCHGLEGKGDGPVAGRLLIPAEDI
AAIRANRDYVYTLVRDGVPGSGMPYFRLYDREKIEMVLDTMSERFDMFGKADVDPDRE
PDSDAMIVWAESCSVCHGVEGEITEFGHTLLPPPPDLQQYSMTHARALEVITNGYPGT
VMPPFRHLPQDVLEDLTIISNTFRVEK"
misc_feature <447836..448183
/locus_tag="Ddes_0369"
/note="Herpesvirus glycoprotein M; Region: Herpes_glycop;
pfam01528"
/db_xref="CDD:201842"
misc_feature 448832..>449020
/locus_tag="Ddes_0369"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
misc_feature 449135..449335
/locus_tag="Ddes_0369"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene complement(449680..450441)
/locus_tag="Ddes_0370"
/db_xref="GeneID:7284027"
CDS complement(449680..450441)
/locus_tag="Ddes_0370"
/inference="protein motif:PFAM:PF02592"
/note="PFAM: protein of unknown function DUF165;
KEGG: hne:HNE_0462 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478961.1"
/db_xref="GI:220903649"
/db_xref="InterPro:IPR003744"
/db_xref="GeneID:7284027"
/translation="MPPAQSGLSHGKNNLPGEAVPDTAGWGFSRNADEWNKAAFAADV
FRTSPRYMLNLLFCPISAASGQAARPRTPCTPLTVMPPALTLAPMFTLLTYIALIVGV
NYAFAVTPLVELPNGEMWPPLSLVVGFIFVVRDYAQRRVGHKVLWAMLVGCVVSWYMA
TPQLALASAAAFAIGELGDWALYTFTNRPFSQRILISSLVGAPLDSIVFLLIIGLATP
WSIITMSASKLLGALLVFWLVRRREQREYAMGVQA"
gene 450519..451442
/gene="era"
/locus_tag="Ddes_0371"
/db_xref="GeneID:7284028"
CDS 450519..451442
/gene="era"
/locus_tag="Ddes_0371"
/inference="protein motif:TFAM:TIGR00436"
/note="Era; Escherichia coli Ras-like protein; Bex;
Bacillus Era-complementing segment; essential protein in
Escherichia coli that is involved in many cellular
processes; GTPase; binds the cell membrane through
apparent C-terminal domain; mutants are arrested during
the cell cycle; Streptococcus pneumoniae Era binds to RNA
and Escherichia coli Era binds 16S rRNA and 30S ribosome"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_002478962.1"
/db_xref="GI:220903650"
/db_xref="InterPro:IPR002917"
/db_xref="InterPro:IPR004044"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005662"
/db_xref="GeneID:7284028"
/translation="MTDLHYRCGWVALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTR
NQIVGILTDDDAQTIFMDTPGLTQVRGRLSKTMIQAVWQSLNQADIIMPVLDAHLYIR
HPEFLDRDLAPVAQALASEERPMIVVVNKVDLFGDKSRMLPLLTRLHEMWPRADIFPI
SALHKDGLADLVELIRKKLPKGQAQFPEDQISTAPLRFMTAEIVREKLFMHLRQEVPY
SVAVDVESWEEDEERGQTVIHATIYVARPMHKAMVIGRAGQSIKAIGTEARKDIQELV
GGKVHLELWVKVREHWTEDTAFLRDLGLMAE"
misc_feature 450534..451430
/gene="era"
/locus_tag="Ddes_0371"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature 450534..451055
/gene="era"
/locus_tag="Ddes_0371"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature 450561..450584
/gene="era"
/locus_tag="Ddes_0371"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature order(450567..450587,450627..450629,450639..450647,
450711..450713,450906..450911,450915..450917,
450999..451004)
/gene="era"
/locus_tag="Ddes_0371"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature order(450606..450608,450612..450656)
/gene="era"
/locus_tag="Ddes_0371"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature 450645..450647
/gene="era"
/locus_tag="Ddes_0371"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature order(450699..450716,450774..450779)
/gene="era"
/locus_tag="Ddes_0371"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature 450702..450713
/gene="era"
/locus_tag="Ddes_0371"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature 450906..450917
/gene="era"
/locus_tag="Ddes_0371"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature 450999..451007
/gene="era"
/locus_tag="Ddes_0371"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature 451161..451394
/gene="era"
/locus_tag="Ddes_0371"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
misc_feature 451281..451292
/gene="era"
/locus_tag="Ddes_0371"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48407"
gene 451446..452159
/locus_tag="Ddes_0372"
/db_xref="GeneID:7284029"
CDS 451446..452159
/locus_tag="Ddes_0372"
/inference="protein motif:PFAM:PF01168"
/note="PFAM: alanine racemase domain protein;
KEGG: dvl:Dvul_2910 alanine racemase domain-containing
protein"
/codon_start=1
/transl_table=11
/product="alanine racemase domain-containing protein"
/protein_id="YP_002478963.1"
/db_xref="GI:220903651"
/db_xref="InterPro:IPR001608"
/db_xref="InterPro:IPR011078"
/db_xref="GeneID:7284029"
/translation="MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAA
VAAAGQVDFGENYVQEALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALV
HTLDSRKLADAFERRLADGEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPH
LDVQGLMCLPPVFDSGDAARPHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTE
GATLVRIGTDIFGLRPAKT"
misc_feature 451452..452138
/locus_tag="Ddes_0372"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes, YBL036c-like proteins; Region:
PLPDE_III_YBL036c_like; cd00635"
/db_xref="CDD:143483"
misc_feature order(451542..451544,451548..451550,451611..451613,
451695..451697,451950..451952,452067..452069,
452115..452117,452121..452126)
/locus_tag="Ddes_0372"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143483"
misc_feature 451548..451550
/locus_tag="Ddes_0372"
/note="catalytic residue [active]"
/db_xref="CDD:143483"
gene 452303..452941
/locus_tag="Ddes_0373"
/db_xref="GeneID:7284030"
CDS 452303..452941
/locus_tag="Ddes_0373"
/inference="protein motif:PFAM:PF03748"
/note="PFAM: flagellar basal body-associated protein FliL;
KEGG: dvl:Dvul_2914 flagellar basal body-associated
protein FliL"
/codon_start=1
/transl_table=11
/product="flagellar basal body-associated protein FliL"
/protein_id="YP_002478964.1"
/db_xref="GI:220903652"
/db_xref="InterPro:IPR005503"
/db_xref="GeneID:7284030"
/translation="MAAKEKDAPALPEGQAESPKKKSRLKRIVIILAILLMTLSGAGL
GGYWWLYLRTPANGAAASSPEAAGGDRPVESGAPSGAASGGHAAAGLPGGQPAPGTDV
RIERQSDLPRSGGMVLPLPPVTVNLADPSGRRYLKMGMEVEVNADVSAALQANNARIR
DAIIMLLAGKSYADIASPDGKVLLKAEVAARLNQILGAQRVVRVFFTDFVVE"
misc_feature 452303..>452428
/locus_tag="Ddes_0373"
/note="Flagellar basal body-associated protein FliL;
Region: FliL; cl00681"
/db_xref="CDD:207163"
misc_feature 452651..452893
/locus_tag="Ddes_0373"
/note="Flagellar basal body-associated protein FliL;
Region: FliL; pfam03748"
/db_xref="CDD:202757"
gene 452955..453200
/locus_tag="Ddes_0374"
/db_xref="GeneID:7284031"
CDS 452955..453200
/locus_tag="Ddes_0374"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478965.1"
/db_xref="GI:220903653"
/db_xref="GeneID:7284031"
/translation="MPGVSSVTAHASHLHIRHQVYFFEEAPSARAGAPLTGRALLQPL
RQEAVHDEGRAGCLRGQGLEPASSSFETACAFKVNLF"
gene 453237..453809
/locus_tag="Ddes_0375"
/db_xref="GeneID:7284032"
CDS 453237..453809
/locus_tag="Ddes_0375"
/inference="protein motif:TFAM:TIGR02480"
/note="TIGRFAM: flagellar motor switch protein FliN;
PFAM: surface presentation of antigens (SPOA) protein;
KEGG: lip:LI0641 flagellar motor switch/type III secretory
pathway protein"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein FliN"
/protein_id="YP_002478966.1"
/db_xref="GI:220903654"
/db_xref="InterPro:IPR001172"
/db_xref="InterPro:IPR001543"
/db_xref="InterPro:IPR012826"
/db_xref="GeneID:7284032"
/translation="MSQEDQDDLAAQWEAELAKEAETAAAPAPDAAGTGAGTAAAGAD
AQHLADEALAAQWAASMAEEEEKQPHQSFGGAGAGMGGQATDAHFKDMTEMARQPGDN
KLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLV
ARGEAVVINEKFGVRLTDIISPIERVKQLG"
misc_feature <453549..453803
/locus_tag="Ddes_0375"
/note="Surface presentation of antigens (SPOA); Region:
SpoA; cl00819"
/db_xref="CDD:207209"
gene 453814..454467
/locus_tag="Ddes_0376"
/db_xref="GeneID:7284033"
CDS 453814..454467
/locus_tag="Ddes_0376"
/inference="protein motif:PFAM:PF04347"
/note="PFAM: flagellar biosynthesis protein FliO;
KEGG: dvl:Dvul_2916 flagellar biosynthesis protein, FliO,
putative"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FliO"
/protein_id="YP_002478967.1"
/db_xref="GI:220903655"
/db_xref="InterPro:IPR007442"
/db_xref="GeneID:7284033"
/translation="MHAVSAAGALALSVIAPASGVAGQAMRGTVGAAAPPAADSGVVS
GLSGGLEQIVEHAAELARQGLGAAAQAAGHVAENFGDSLESGLAGDVAGSAAAHGASL
GGSSFSWGGYAQAVGILFLLVALLWLVVWLVRRFGKFNFLPRPGALPKGALVMEAQLP
LGPRKGLMVVRFLNRRLLLGVTDQHITLLTEEQAQHEPQNKDFQHVMEEVARGADSR"
sig_peptide 453814..453882
/locus_tag="Ddes_0376"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.518 at
residue 23"
misc_feature 454237..454452
/locus_tag="Ddes_0376"
/note="Flagellar biosynthesis protein, FliO; Region: FliO;
pfam04347"
/db_xref="CDD:202980"
gene 454517..455194
/gene="fliP"
/locus_tag="Ddes_0377"
/db_xref="GeneID:7284034"
CDS 454517..455194
/gene="fliP"
/locus_tag="Ddes_0377"
/EC_number="3.1.1.3"
/inference="protein motif:TFAM:TIGR01103"
/note="FliP, with proteins FliQ and FliR, forms the core
of the central channel in the flagella export apparatus"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FliP"
/protein_id="YP_002478968.1"
/db_xref="GI:220903656"
/db_xref="InterPro:IPR005837"
/db_xref="InterPro:IPR005838"
/db_xref="GeneID:7284034"
/translation="MPTLQLTLAGGAKSPEKVSILLEILFLLTILSVAPAIMLTVTSF
TRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVIMFPVGRQINDDALQPYLNERID
YREALDKAQAPLRSFMFKHTREKDLSIFYSISNMEAPKNKEEVPTMLLAAAYVISELK
TAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGS
LVNSFLL"
misc_feature 454532..455185
/gene="fliP"
/locus_tag="Ddes_0377"
/note="flagellar biosynthesis protein FliP; Reviewed;
Region: fliP; PRK05699"
/db_xref="CDD:180209"
gene 455286..455555
/locus_tag="Ddes_0378"
/db_xref="GeneID:7284035"
CDS 455286..455555
/locus_tag="Ddes_0378"
/inference="protein motif:TFAM:TIGR01402"
/note="TIGRFAM: flagellar biosynthetic protein FliQ;
PFAM: export protein FliQ family 3;
KEGG: dvl:Dvul_2918 flagellar biosynthetic protein FliQ"
/codon_start=1
/transl_table=11
/product="flagellar biosynthetic protein FliQ"
/protein_id="YP_002478969.1"
/db_xref="GI:220903657"
/db_xref="InterPro:IPR002191"
/db_xref="InterPro:IPR006305"
/db_xref="GeneID:7284035"
/translation="MSPDFVIGFGRQAIELCLMMALPMLGVGLGVGVIVSVIQAATQI
QEMTLTFIPKIVCMFLTLLLALPWLMERMITFTRDVFINIPNYVR"
misc_feature 455286..455552
/locus_tag="Ddes_0378"
/note="flagellar biosynthesis protein FliQ; Validated;
Region: fliQ; PRK05700"
/db_xref="CDD:180210"
gene complement(455969..456775)
/locus_tag="Ddes_0379"
/db_xref="GeneID:7284036"
CDS complement(455969..456775)
/locus_tag="Ddes_0379"
/inference="protein motif:TFAM:TIGR00186"
/note="TIGRFAM: RNA methyltransferase, TrmH family, group
3;
PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose
methyltransferase substrate binding;
KEGG: dvl:Dvul_2919 RNA methyltransferase"
/codon_start=1
/transl_table=11
/product="TrmH family RNA methyltransferase"
/protein_id="YP_002478970.1"
/db_xref="GI:220903658"
/db_xref="InterPro:IPR001537"
/db_xref="InterPro:IPR004441"
/db_xref="InterPro:IPR013123"
/db_xref="GeneID:7284036"
/translation="MHIQSEEAPLLPGLKPVLELLSSDPQRVDCVFCKKGLRSPEARE
VQDLCRKNDIRFTLVEQAALDRLCRPGGPRRGDAREAGRDAVAHQGVVARLAATSFCE
LEHIFAAVEQAPLPIILALDQVQDPGNVGTLCRTLYALGGAGIILPRHNSAYLGPAAR
RSAAGALEHLPVARVTNLGHALDSAEEAGLTIYGAGGQNGPASVDAFAEPVRLPAVLV
LGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILLGLTAARLKP"
misc_feature complement(456485..>456700)
/locus_tag="Ddes_0379"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; cl06870"
/db_xref="CDD:208565"
misc_feature complement(455999..456430)
/locus_tag="Ddes_0379"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene 456912..458579
/locus_tag="Ddes_0380"
/db_xref="GeneID:7284037"
CDS 456912..458579
/locus_tag="Ddes_0380"
/inference="protein motif:PFAM:PF01464"
/note="PFAM: Peptidoglycan-binding LysM; Lytic
transglycosylase catalytic;
KEGG: dvl:Dvul_2920 lytic transglycosylase, catalytic"
/codon_start=1
/transl_table=11
/product="lytic transglycosylase"
/protein_id="YP_002478971.1"
/db_xref="GI:220903659"
/db_xref="InterPro:IPR002482"
/db_xref="InterPro:IPR008258"
/db_xref="GeneID:7284037"
/translation="MTEHTMGTVAQGRKGAGAGIRLCVLAALCCLLLAGGCASRQGGS
GGGGASFSVPDDDPTPLSPKEVAALNSTGHVDKSLPPEAMDDVARQYKYFLRKGRNSV
CVFSKRAENYLAYARKVFRSRGMPEELAYLAIVESGYRVDARSPVGATGAWQFMPPTG
ERFGLTQNWFTDERLDPYESTEAAADYLQKLHEYFGDWPTAIAAYNAGEGKIGRAKAG
TGGKDFFEVKARNHMLDEKAQLRDETKQYVPRFLAVTKIMRNLPELGFEPISPESAPG
VLRLTARPGTDLNGLADACGMSWGDFISYNRHHKRRITDTDRSTFVYVPARIERQATA
FLSSPRCTAYADWGAVRVASNADSWDKISRRCGIPATQLRALNPGESRLRAGQTVLAP
RSVDMSSRAVAALDNKVQAQSGNRGRASAQPAGRQTAAQGGSHTLQAGETLYAVARQY
NISVKDLQDHNNISSPNMIHAGTVLRIPARAVAQAGPVSGGSDGRVGRKAGSGAAKAA
KSTYLVQARDSLWKIAREHNVSVEDLKRWNGVDEKTLRAGSVLVVEQ"
misc_feature 457287..457679
/locus_tag="Ddes_0380"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(457317..457319,457377..457379,457470..457472,
457524..457526)
/locus_tag="Ddes_0380"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature 457317..457319
/locus_tag="Ddes_0380"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
misc_feature 457980..458075
/locus_tag="Ddes_0380"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 458211..458342
/locus_tag="Ddes_0380"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature 458247..458570
/locus_tag="Ddes_0380"
/note="FOG: LysM repeat [Cell envelope biogenesis, outer
membrane]; Region: LytE; COG1388"
/db_xref="CDD:31578"
misc_feature 458442..458570
/locus_tag="Ddes_0380"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
gene 459161..460698
/locus_tag="Ddes_R0007"
/db_xref="GeneID:7284038"
rRNA 459161..460698
/locus_tag="Ddes_R0007"
/product="16S ribosomal RNA"
/note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res.
Apr2 2, 2007"
/db_xref="GeneID:7284038"
gene 460780..460856
/locus_tag="Ddes_R0008"
/note="tRNA-Ile1"
/db_xref="GeneID:7284039"
tRNA 460780..460856
/locus_tag="Ddes_R0008"
/product="tRNA-Ile"
/db_xref="GeneID:7284039"
gene 460879..460954
/locus_tag="Ddes_R0009"
/note="tRNA-Ala1"
/db_xref="GeneID:7284040"
tRNA 460879..460954
/locus_tag="Ddes_R0009"
/product="tRNA-Ala"
/db_xref="GeneID:7284040"
gene 461101..464031
/locus_tag="Ddes_R0010"
/db_xref="GeneID:7284041"
rRNA 461101..464031
/locus_tag="Ddes_R0010"
/product="23S ribosomal RNA"
/note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res.
Apr2 2, 2007"
/db_xref="GeneID:7284041"
gene 464077..464191
/locus_tag="Ddes_R0011"
/db_xref="GeneID:7284042"
rRNA 464077..464191
/locus_tag="Ddes_R0011"
/product="5S ribosomal RNA"
/note="5S ribosomal RNA as predicted by Rfam (RF00001),
score 60.38"
/db_xref="GeneID:7284042"
gene 464079..464193
/locus_tag="Ddes_R0012"
/db_xref="GeneID:7284043"
rRNA 464079..464193
/locus_tag="Ddes_R0012"
/product="5S ribosomal RNA"
/note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res.
Apr2 2, 2007"
/db_xref="GeneID:7284043"
gene complement(464480..465307)
/locus_tag="Ddes_0381"
/db_xref="GeneID:7284044"
CDS complement(464480..465307)
/locus_tag="Ddes_0381"
/inference="protein motif:PFAM:PF01656"
/note="PFAM: Cobyrinic acid ac-diamide synthase;
KEGG: dvl:Dvul_1132 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_002478972.1"
/db_xref="GI:220903660"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:7284044"
/translation="MKIAVSGKGGVGKTTITAWFGDYLARMGHQVWLVDADTALSLGQ
ASGLDAQAMPVALAQRPELVRERIRPAGQGGMMVLNPHVEDLPEILSAELPVAGPSLG
QWPVGRKRLLVMGALTTANGGCACEASALLKAMLAHLVLERNDWVLVDMEAGVEHLGR
GTVAHVDRLLVVSEPSLRSLQTAVQVSHMAADLGLQKQSLVLNRTVGAEMCIIPPELQ
LPDHRMALPLVPQLRHRQLLTTSVLGLDGTDQKMLDRFFRCLLEQWSQDCCTEKACA"
misc_feature complement(464789..465304)
/locus_tag="Ddes_0381"
/note="The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible...; Region:
CooC; cd02034"
/db_xref="CDD:73297"
misc_feature complement(465266..465289)
/locus_tag="Ddes_0381"
/note="P-loop; other site"
/db_xref="CDD:73297"
gene complement(465413..467308)
/locus_tag="Ddes_0382"
/db_xref="GeneID:7284045"
CDS complement(465413..467308)
/locus_tag="Ddes_0382"
/EC_number="1.2.99.2"
/inference="protein motif:TFAM:TIGR01702"
/note="KEGG: dvl:Dvul_1133 carbon-monoxide dehydrogenase,
catalytic subunit;
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit;
PFAM: Prismane"
/codon_start=1
/transl_table=11
/product="carbon-monoxide dehydrogenase, catalytic
subunit"
/protein_id="YP_002478973.1"
/db_xref="GI:220903661"
/db_xref="InterPro:IPR004137"
/db_xref="InterPro:IPR010047"
/db_xref="GeneID:7284045"
/translation="MDDRQTDINNMSIWEDAQKMLHKARAEGIETAWDRLAQQTPHCR
FCELGTTCRNCVMGPCRISAKAAPGGKLSRGVCGADAHVIVARNFGRFIAGGSAGHSD
HGRDVIETLEAVVEGKAEGYEIRDPAKLLRIAGELGIAVDGLAVNEVAALVVDACYSD
FGSRRGAVNFISRVPAKRRQVWEKLGITPRGVDREIAEMMHRTHMGCDNDAPNTMLHA
ARCALSDGWAGSMIATELCDILFGTPSPRMSTVNLGVIKKETVNILVHGHNPVVSEMI
LAVSREPEVLEQARQAGAAGITVAGLCCTGNELLMRQGIPMAGNHLMTELAIVTGAVE
AVVVDYQCIMPSLVQVAACYHTRFIDTAPKARFTGAVHMNFTPENARQEASAILHMAI
EAFAARDPGRVDIPVSPVNIMTGFSNEAILEALGGSLDPLLDAVKAGTVRGFAAVVGC
NNPKVRQDSANVGIIKELIKKDIMVLVTGCITTAAGKAGLLLPEGAAMAGPGLQKLCA
SLGIPPVLHMGSCVDNARIMHLCGLIANSLGVDISDLPVVASAPEWYSEKAAAIGLYA
VASGVYTHLGLPPNILGSDVVTDIALNGLEGLVGASFVVEADPVKAADLLDRRIRTKR
SALGLDA"
misc_feature complement(465422..467269)
/locus_tag="Ddes_0382"
/note="Carbon monoxide dehydrogenase (CODH) is found in
acetogenic and methanogenic organisms and is responsible
for the synthesis and breakdown of acetyl-CoA,
respectively. CODH has two types of metal clusters, a
cubane [Fe4-S4] center (B-cluster) similar to...; Region:
CODH; cd01915"
/db_xref="CDD:29677"
misc_feature complement(order(465434..465436,465443..465445,
465515..465520,465530..465532,465542..465544,
465551..465553,465635..465640,465644..465646,
466193..466201,466205..466207,466211..466213,
466217..466222,466253..466255,466271..466288,
466667..466669,466679..466699,466703..466708,
466715..466720,466730..466732,466751..466762,
466769..466771,467012..467017,467024..467029,
467033..467035,467045..467047,467075..467086,
467120..467122,467126..467146,467156..467158,
467183..467185,467192..467197,467204..467206,
467219..467221))
/locus_tag="Ddes_0382"
/note="ACS interaction site; other site"
/db_xref="CDD:29677"
misc_feature complement(order(465635..465646,466205..466207,
466211..466222,466262..466264,466274..466288,
466667..466669,466673..466699,466703..466708,
466715..466720,466994..466996,467003..467005,
467015..467017,467024..467026,467036..467038,
467045..467047,467075..467086,467126..467149,
467156..467158,467162..467164,467171..467173,
467183..467188,467192..467197,467201..467206,
467219..467221))
/locus_tag="Ddes_0382"
/note="CODH interaction site; other site"
/db_xref="CDD:29677"
misc_feature complement(465470..467155)
/locus_tag="Ddes_0382"
/note="Prismane/CO dehydrogenase family; Region: Prismane;
pfam03063"
/db_xref="CDD:202522"
misc_feature complement(order(467078..467080,467129..467131,
467144..467146,467153..467155))
/locus_tag="Ddes_0382"
/note="cubane metal cluster (B-cluster) [ion binding];
other site"
/db_xref="CDD:29677"
misc_feature complement(order(465635..465637,465641..465643,
465746..465748,465869..465871,465959..465964,
466283..466285,466397..466399,466505..466507))
/locus_tag="Ddes_0382"
/note="Ni-Fe-S cluster (C-cluster) [ion binding]; other
site"
/db_xref="CDD:29677"
gene complement(467452..468129)
/locus_tag="Ddes_0383"
/db_xref="GeneID:7284046"
CDS complement(467452..468129)
/locus_tag="Ddes_0383"
/inference="protein motif:SMART:SM00419"
/note="SMART: regulatory protein Crp;
KEGG: chy:CHY_1835 carbon monoxide oxidation system
transcription regulator CooA-1"
/codon_start=1
/transl_table=11
/product="putative Crp/Fnr family transcriptional
regulator"
/protein_id="YP_002478974.1"
/db_xref="GI:220903662"
/db_xref="InterPro:IPR001808"
/db_xref="InterPro:IPR012318"
/db_xref="GeneID:7284046"
/translation="MKFSNINLLDELSRPEFAPLLAAFHERLCPRQSIIFTPRYDDHL
SDQEPQKQESFVFIVKSGLVRVYLSCEEREFTIGFLKPGDLFVSHSNALVQAVDDSAI
LLLDTPTFNRGMISMPEFTMPIVRVLGGMLKSCFSIIDGLALRDVTVRLARLLTDLPR
EEDGQTPGSLIRLPLSGEKLAQSLGTSRQTISTLLTDFTRLGILHKEQRGLYRILDEE
RLRELLR"
misc_feature complement(467482..468123)
/locus_tag="Ddes_0383"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature complement(467764..468108)
/locus_tag="Ddes_0383"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature complement(467854..467862)
/locus_tag="Ddes_0383"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature complement(order(467770..467778,467788..467796))
/locus_tag="Ddes_0383"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature complement(467482..467691)
/locus_tag="Ddes_0383"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:28976"
misc_feature complement(467677..467682)
/locus_tag="Ddes_0383"
/note="putative switch regulator; other site"
/db_xref="CDD:28976"
misc_feature complement(order(467569..467571,467596..467604,
467608..467610))
/locus_tag="Ddes_0383"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature complement(467551..467571)
/locus_tag="Ddes_0383"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature complement(order(467551..467553,467563..467568))
/locus_tag="Ddes_0383"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature complement(467563..467568)
/locus_tag="Ddes_0383"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene complement(468386..468634)
/locus_tag="Ddes_0384"
/db_xref="GeneID:7284047"
CDS complement(468386..468634)
/locus_tag="Ddes_0384"
/inference="protein motif:TFAM:TIGR00074"
/note="TIGRFAM: hydrogenase assembly chaperone hypC/hupF;
PFAM: hydrogenase expression/formation protein
(HUPF/HYPC);
KEGG: dvl:Dvul_1243 hydrogenase assembly chaperone
HypC/HupF"
/codon_start=1
/transl_table=11
/product="hydrogenase assembly chaperone HypC/HupF"
/protein_id="YP_002478975.1"
/db_xref="GI:220903663"
/db_xref="InterPro:IPR001109"
/db_xref="GeneID:7284047"
/translation="MCLAIPARIEELFGEGMARVRVGESQTFLNASVMLLPKEPQIGD
YVIVHAGFALHTLTPKEAEESLSALRELAQALEDPPQF"
misc_feature complement(468455..468634)
/locus_tag="Ddes_0384"
/note="HupF/HypC family; Region: HupF_HypC; pfam01455"
/db_xref="CDD:201805"
gene 469073..471889
/gene="ileS"
/locus_tag="Ddes_0385"
/db_xref="GeneID:7284048"
CDS 469073..471889
/gene="ileS"
/locus_tag="Ddes_0385"
/inference="protein motif:TFAM:TIGR00392"
/note="IleRS; catalyzes the formation of
isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since
isoleucine and other amino acids such as valine are
similar, there are additional editing function in this
enzyme; one is involved in hydrolysis of activated
valine-AMP and the other is involved in deacylation of
mischarged Val-tRNA(Ile); there are two active sites, one
for aminoacylation and one for editing; class-I
aminoacyl-tRNA synthetase family type 1 subfamily; some
organisms carry two different copies of this enzyme"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_002478976.1"
/db_xref="GI:220903664"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002301"
/db_xref="InterPro:IPR010663"
/db_xref="InterPro:IPR013155"
/db_xref="InterPro:IPR015413"
/db_xref="InterPro:IPR015905"
/db_xref="GeneID:7284048"
/translation="MSDYKKTLNLPQTAFPMKANLAQREPEAIKKWEAANACAAMVEA
SGSEGTYILHDGPPYANGHLHMGHALNKILKDIIVKSRNMAGYASWYVPGWDCHGLPI
EHKVEQDLKEKKKSLPAHVVRKLCREYANKWLDVQRKEFKRLGVLGDWDHPYISMDPA
YEAVTAGELAKFVAAGGVARAKKPIYWCCSCHTALAEAEVEYNDHTSPSVYVRFALPD
EGLKKVFAAADPARAHVVIWTTTPWTLPDNMAVCLHPEFTYALVEAEGSQYILAEELV
ASCAETFGWSEYTILDRATGERLEGLKARHPFYDRQSSLVLGLHVTLDAGTGCVHTAP
GHGREDYDVALKYGLEIYSPMDDAGRFLPAVEFFAGLNVFEANPKVVEKLEEVGALLQ
KGKIRHSYPHCWRCKEPVIFRATTQWFISMEKNDLRTRALKAIDEEVRWIPAWGRERI
HNMVEFRPDWCISRQRQWGVPILALLCEDCGEAWNDPAWMQEIAARFAKHPTGCDYWY
EAELKDVVPEGLACPHCGGNHWKRETDILDVWFDSGTSFAAVLEKRPELGFPADLYLE
GSDQHRGWFHSSLLVSEGTRGCAPYRAVLTHGYVVDGDGRKMSKSVGNVIAPQELIEK
FGAEIVRLWVSSVEYREDIRLSDEILGRLVDAYRRIRNTCRFIMGNLSDITAHDLLSL
DRLQPLDRFALDVAGRVHERVQQAYMDFDFHKVYHTLHNYCVTDLSSVYLDILKDRLY
ASAPHSDERRSAQTALWHILCLLLRDMAPVLSFTAEEIFSHLPESLRGPETTVFALPP
LAAAPYLLDEGTRDDWNVLLAVRGAVTKAIEPMRREGIIGHSLDTRITLFVADELRQR
LEGLHTDLRAVCIVSQLHLEALDRAPQAAYRDEEVAGLAIGVEKARGEKCERCWIYST
ELGSDASHPALCPRCTAVIKGMES"
misc_feature 469073..471877
/gene="ileS"
/locus_tag="Ddes_0385"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK05743"
/db_xref="CDD:180231"
misc_feature 469220..>469633
/gene="ileS"
/locus_tag="Ddes_0385"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 469265..469276
/gene="ileS"
/locus_tag="Ddes_0385"
/note="active site"
/db_xref="CDD:173912"
misc_feature 469265..469276
/gene="ileS"
/locus_tag="Ddes_0385"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature order(469265..469267,469274..469276)
/gene="ileS"
/locus_tag="Ddes_0385"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature <469973..470227
/gene="ileS"
/locus_tag="Ddes_0385"
/note="Leucyl-tRNA synthetase, Domain 2; Region:
tRNA-synt_1_2; pfam13603"
/db_xref="CDD:205781"
misc_feature <470222..471007
/gene="ileS"
/locus_tag="Ddes_0385"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature order(470417..470419,470690..470692,470699..470701,
470768..470782,470786..470788,470792..470794,
470861..470875,470885..470902,470996..470998)
/gene="ileS"
/locus_tag="Ddes_0385"
/note="active site"
/db_xref="CDD:173909"
misc_feature 470891..470905
/gene="ileS"
/locus_tag="Ddes_0385"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature 471005..471547
/gene="ileS"
/locus_tag="Ddes_0385"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_BEm; cd07960"
/db_xref="CDD:153414"
misc_feature order(471014..471016,471026..471028,471035..471037,
471047..471049,471056..471058,471065..471070,
471209..471211,471218..471223,471230..471235,
471242..471244,471257..471259,471269..471271,
471278..471280,471536..471538,471545..471547)
/gene="ileS"
/locus_tag="Ddes_0385"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153414"
misc_feature order(471056..471058,471065..471067)
/gene="ileS"
/locus_tag="Ddes_0385"
/note="anticodon binding site; other site"
/db_xref="CDD:153414"
misc_feature 471779..471868
/gene="ileS"
/locus_tag="Ddes_0385"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene 471894..472430
/locus_tag="Ddes_0386"
/db_xref="GeneID:7284049"
CDS 471894..472430
/locus_tag="Ddes_0386"
/EC_number="3.4.23.36"
/inference="protein motif:TFAM:TIGR00077"
/note="KEGG: dvl:Dvul_1239 lipoprotein signal peptidase;
TIGRFAM: lipoprotein signal peptidase;
PFAM: peptidase A8 signal peptidase II"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_002478977.1"
/db_xref="GI:220903665"
/db_xref="InterPro:IPR001872"
/db_xref="GeneID:7284049"
/translation="MRRRYRILGGMALLALVLDQLTKYVVMQTIPEHRSVPVIEGLFD
LVNIRNRGAAFGFLNRSDIEWQFWLFLGATVVAVWAILMLVRSSHDEPWLFAGLGLVM
GGALGNLVDRIRFRAVVDFLDVYWGDWHWPAFNVADSAIFVGAALACVIMWRKPPENG
NEKGSKAGKSSGKRGRAA"
misc_feature 471894..472361
/locus_tag="Ddes_0386"
/note="lipoprotein signal peptidase; Reviewed; Region:
lspA; PRK00376"
/db_xref="CDD:178992"
gene 472427..472633
/locus_tag="Ddes_0387"
/db_xref="GeneID:7284050"
CDS 472427..472633
/locus_tag="Ddes_0387"
/inference="similar to AA sequence:KEGG:DVU1929"
/note="KEGG: dvu:DVU1929 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478978.1"
/db_xref="GI:220903666"
/db_xref="GeneID:7284050"
/translation="MIFHWWHVVLVMIPMIPTLWSIIHIWGHEFSTPQQRALWLVLVV
FLPVIGGIIYIFTGRKKALGKVQI"
misc_feature 472469..472606
/locus_tag="Ddes_0387"
/note="Phospholipase_D-nuclease N-terminal; Region:
PLDc_N; pfam13396"
/db_xref="CDD:205574"
gene 472648..473625
/locus_tag="Ddes_0388"
/db_xref="GeneID:7284051"
CDS 472648..473625
/locus_tag="Ddes_0388"
/inference="protein motif:TFAM:TIGR02795"
/note="KEGG: dvl:Dvul_1237 TPR repeat-containing protein;
TIGRFAM: tol-pal system protein YbgF;
PFAM: TPR repeat-containing protein; Tetratricopeptide
TPR_2 repeat protein;
SMART: Tetratricopeptide domain protein"
/codon_start=1
/transl_table=11
/product="tol-pal system protein YbgF"
/protein_id="YP_002478979.1"
/db_xref="GI:220903667"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="InterPro:IPR014162"
/db_xref="GeneID:7284051"
/translation="MRTFRSLCLVTLACAALPLSACVSGGSSSSGSLSLEQQVQQHDV
QLRQMQPSQADAWNQIQALRQELNTVKGQMDDLNNAGGARALVDRVNRHDEALRQVER
SMALNLNLGEPPSAVPAMASSAPAAPQAPSYGLPTYGQAAAGTVAAGSTGYAASVPEG
VQPYGGQAAGASGQVPAQAPDGSTWGQPSPQPQPQVQVPQKDISLALFDAGVNAYNAR
KYDEAQRSFTDFLKNYKGHNLASEAQFYLAECYFQRNQFADAALSYDKVIKEYPKSSS
APGAYLKQGISFSKLNQSAAAKARLEELIKKYPNSPEAARAKTFLKTNK"
sig_peptide 472648..472713
/locus_tag="Ddes_0388"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.401 at
residue 22"
misc_feature 473263..473601
/locus_tag="Ddes_0388"
/note="tol-pal system protein YbgF; Region: tol_pal_ybgF;
TIGR02795"
/db_xref="CDD:188247"
misc_feature 473371..>473589
/locus_tag="Ddes_0388"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(473371..473376,473380..473385,473392..473397,
473491..473496,473500..473505,473512..473517)
/locus_tag="Ddes_0388"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(473389..473391,473425..473427,473437..473439,
473446..473448,473500..473502,473536..473538,
473548..473550,473557..473559)
/locus_tag="Ddes_0388"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 473714..474349
/locus_tag="Ddes_0389"
/db_xref="GeneID:7284052"
CDS 473714..474349
/locus_tag="Ddes_0389"
/inference="similar to AA sequence:KEGG:DVU1458"
/note="KEGG: dvu:DVU1458 chemotaxis protein CheZ,
putative"
/codon_start=1
/transl_table=11
/product="putative chemotaxis phosphatase, CheZ"
/protein_id="YP_002478980.1"
/db_xref="GI:220903668"
/db_xref="GeneID:7284052"
/translation="MSEKKAEPAVYRQLSTDMRQGLKDIYQQISTASDSQPLADSGTD
ALFHEATDQLDEVLKATESATMSIMEIVERHLDMQEQNAELLALVREGTISSAQIAML
EANNRQMGDDLTSVLTTLSFQDITGQRIKRVVAALNKIENTVVELYLSSGLIMEGAEK
DPQKDAAALQDEARQAVEEFRQQRKAENLKGPDKNGVSQSAIDDMLSQLGM"
misc_feature <473858..474343
/locus_tag="Ddes_0389"
/note="Chemotaxis phosphatase, CheZ; Region: CheZ;
cl01219"
/db_xref="CDD:186389"
gene 474676..475500
/locus_tag="Ddes_0390"
/db_xref="GeneID:7284053"
CDS 474676..475500
/locus_tag="Ddes_0390"
/inference="protein motif:PFAM:PF00881"
/note="PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur
binding domain protein;
KEGG: dol:Dole_1688 nitroreductase"
/codon_start=1
/transl_table=11
/product="nitroreductase"
/protein_id="YP_002478981.1"
/db_xref="GI:220903669"
/db_xref="InterPro:IPR000415"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR017900"
/db_xref="GeneID:7284053"
/translation="MNVFTVDHDLCRKDGICALVCPVHIIDAEPGNYPVLDKHKAVYC
LGCGQCMAFCPTLACTAPGLEREDCRPLSGQDMPTPRQADELAFSRRSVRNFKDKTIP
RQELEDLLAAVRFAPTAKNTQNLRWILLESRERVVQLAELVVAWMRELPRIDPALDEA
MHAGGLVRAWDRGVDVITRTAPQLAVVVAPQWRWGQPDAIIAATYLELLAQARGIGCC
WGGYLCMAFEHPAAQGVRDFLGLGEGEMAFAAQMMGYPRFKAHARPPRKNAHITWK"
misc_feature 474688..474840
/locus_tag="Ddes_0390"
/note="4Fe-4S dicluster domain; Region: Fer4_10;
pfam13237"
/db_xref="CDD:205417"
misc_feature 474940..475482
/locus_tag="Ddes_0390"
/note="Proteins of this family catalyze the reduction of
flavin or nitrocompounds using NAD(P)H as electron donor
in a obligatory two-electron transfer, utilizing FMN or
FAD as cofactor. They are often found to be homodimers.
Enzymes of this family are...; Region:
Nitro_FMN_reductase; cl00514"
/db_xref="CDD:207085"
misc_feature order(474943..474945,474949..474951,474955..474957,
475033..475035,475336..475341)
/locus_tag="Ddes_0390"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73303"
misc_feature order(475267..475269,475273..475278,475285..475290,
475297..475299)
/locus_tag="Ddes_0390"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73303"
gene 476288..477085
/locus_tag="Ddes_0391"
/db_xref="GeneID:7284054"
CDS 476288..477085
/locus_tag="Ddes_0391"
/inference="protein motif:PFAM:PF06429"
/note="PFAM: flagellar basal body rod protein; protein of
unknown function DUF1078 domain protein;
KEGG: lip:LI0740 flagellar basal body rod protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478982.1"
/db_xref="GI:220903670"
/db_xref="InterPro:IPR001444"
/db_xref="InterPro:IPR010930"
/db_xref="GeneID:7284054"
/translation="MQAGMFSGLFAALTTEHRMNFIANNLANANTRGYKRDTVAFKDT
MVTYAFDEIREPLMNLKSKPLFPEPLNASRVRLAVSKIDFAQGSMQYSGNPLDMAING
ENAFFRVATPTGDFLTRNGAFVLSENGTIMTPQGYPLQAQGGGNIVIPQGTRHIQVSG
DGQVIADNDVLGQIALVSVDNPQNLEKMGNNLYRPRENVQVAEGNAYLEGGRIEQGFT
EAANVEVVPEMVNMIEVQRQFEAYQKVMQTSDTLDRAATEKVGRRQG"
misc_feature 476297..477010
/locus_tag="Ddes_0391"
/note="flagellar hook-basal body protein; Region:
FlgEFG_subfam; TIGR03506"
/db_xref="CDD:211830"
misc_feature 476306..476392
/locus_tag="Ddes_0391"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; cl16922"
/db_xref="CDD:211518"
misc_feature 476726..477007
/locus_tag="Ddes_0391"
/note="flagellar basal-body rod protein FlgF; Region:
flgF; TIGR02490"
/db_xref="CDD:211744"
gene 477189..477974
/gene="flgG"
/locus_tag="Ddes_0392"
/db_xref="GeneID:7284055"
CDS 477189..477974
/gene="flgG"
/locus_tag="Ddes_0392"
/inference="protein motif:TFAM:TIGR02488"
/note="makes up the distal portion of the flagellar basal
body rod"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod protein FlgG"
/protein_id="YP_002478983.1"
/db_xref="GI:220903671"
/db_xref="InterPro:IPR001444"
/db_xref="InterPro:IPR010930"
/db_xref="InterPro:IPR012834"
/db_xref="GeneID:7284055"
/translation="MMRSLWTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDL
MYQTMRMAGSITEGDNRLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGF
FQVDVNGELMYTRAGSFKLNQDGVVVTANGYILQPEFAVPPETKNISISSSGHIAALD
AQGQEIAGAEIPLYTFINYAGLDARGRNLFTPTEASGEAVEGIPGTDNVGTLAQGFLE
MSNVEVVDEMVNMIVGQRAYEVNSKSIQTSDSMLGIAVQLKRS"
misc_feature 477189..477965
/gene="flgG"
/locus_tag="Ddes_0392"
/note="flagellar basal body rod protein FlgG; Provisional;
Region: flgG; PRK12693"
/db_xref="CDD:183687"
misc_feature 477201..477293
/gene="flgG"
/locus_tag="Ddes_0392"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 477726..477962
/gene="flgG"
/locus_tag="Ddes_0392"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 477993..479243
/locus_tag="Ddes_0393"
/db_xref="GeneID:7284056"
CDS 477993..479243
/locus_tag="Ddes_0393"
/inference="protein motif:TFAM:TIGR03170"
/note="TIGRFAM: flagella basal body P-ring formation
protein FlgA;
PFAM: SAF domain protein;
KEGG: dvl:Dvul_2427 FlgA family protein"
/codon_start=1
/transl_table=11
/product="flagella basal body P-ring formation protein
FlgA"
/protein_id="YP_002478984.1"
/db_xref="GI:220903672"
/db_xref="InterPro:IPR013974"
/db_xref="InterPro:IPR017585"
/db_xref="GeneID:7284056"
/translation="MISQAAYISLAAIGARRKAPSALVALWGILLALALACLWPAGTA
QAAGGVPQAVWQDNDRNHRRSPPQVKNQLRPPQVHAGQLPLAPEAHDARTARTGTQLA
AGDAPVAQEGQLSLLGQGDWRLKIVPAAVSNGSMVLLGDIAVLLGQMDPAQWKGLRAT
PLWEAPPEEGKPLQINRSRLSQALRQALGPDMAGRCILPTSLVIQRGGLVFREDDLRN
YVVKSLTPQLAAMPGEAELTDFRLPEYIFLAHSQQQVQLEPGKLAPGRVPLRFAVQEA
DGTVLRRVAGTATLSLWLTVPTAAQSMNKGDALSAQSVTFMRVNAGQLRDLPWDGRGG
PWQLVRAINAGDPILQSDLASQLMVKRGDVVSLIFSRGNLRITTQAQALADGEPGATI
PVRNLQTKKQVFGIVKNGNTVEIN"
sig_peptide 477993..478133
/locus_tag="Ddes_0393"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.994 at
residue 47"
misc_feature 478638..479237
/locus_tag="Ddes_0393"
/note="SAF-like; Region: SAF_2; pfam13144"
/db_xref="CDD:205325"
misc_feature 478878..479237
/locus_tag="Ddes_0393"
/note="flagella basal body P-ring formation protein FlgA;
Region: flgA_cterm; TIGR03170"
/db_xref="CDD:211796"
gene 479292..480011
/gene="flgH"
/locus_tag="Ddes_0394"
/db_xref="GeneID:7284057"
CDS 479292..480011
/gene="flgH"
/locus_tag="Ddes_0394"
/inference="protein motif:PFAM:PF02107"
/note="part of the basal body which consists of four rings
L, P, S, and M mounted on a central rod"
/codon_start=1
/transl_table=11
/product="flagellar basal body L-ring protein"
/protein_id="YP_002478985.1"
/db_xref="GI:220903673"
/db_xref="InterPro:IPR000527"
/db_xref="GeneID:7284057"
/translation="MQARHIIPVMALAFALCAACGGGPRKHPALQQPVVDPQEYRQEA
NGPDNPGSLFAASEQDTLFSDSRARRVGDIVVVKLVENTKAQNKAETTANKKGANDYQ
VGALMGQGSHGFIPFLGLGPTNRVGTPALTTSSTSDLSGTGKTKRENYVTTSLAARVI
RVLPGGLLQIEGAREIRVNEETEYMVVRGMVRAKDVSADNSVLSTQIADASIEYYGRG
VLADKQKPGWFTRLMDNIWPF"
sig_peptide 479292..479357
/gene="flgH"
/locus_tag="Ddes_0394"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.783) with cleavage site probability 0.315 at
residue 22"
misc_feature 479361..480008
/gene="flgH"
/locus_tag="Ddes_0394"
/note="flagellar basal body L-ring protein; Reviewed;
Region: flgH; PRK12696"
/db_xref="CDD:171670"
gene 480778..480864
/locus_tag="Ddes_R0013"
/note="tRNA-Leu1"
/db_xref="GeneID:7284058"
tRNA 480778..480864
/locus_tag="Ddes_R0013"
/product="tRNA-Leu"
/db_xref="GeneID:7284058"
gene complement(481291..481866)
/locus_tag="Ddes_0395"
/db_xref="GeneID:7284059"
CDS complement(481291..481866)
/locus_tag="Ddes_0395"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: bcm:Bcenmc03_5566 integrase catalytic region"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478986.1"
/db_xref="GI:220903674"
/db_xref="GeneID:7284059"
/translation="MNSHKDAKLTVRSREEMVRRMQYEPAARVAAGYGVSLRTARKWE
RRHAHGGQEALAGRSSRPRRCCNKLSEQDFCRIFELRKTRKTGDEIALCLGICRSSVF
RTLHKLGCSRLASLEKKDPVQRYQWENPGQMLHWTLRSWARLMALVIAKSAWAMPAVG
GQDGNICTLVLMMPQGSRTPPFSRTKQRNPQ"
misc_feature complement(<481675..481866)
/locus_tag="Ddes_0395"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature complement(481414..481677)
/locus_tag="Ddes_0395"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG3355"
/db_xref="CDD:33163"
gene 482458..483591
/locus_tag="Ddes_0396"
/db_xref="GeneID:7284060"
CDS 482458..483591
/locus_tag="Ddes_0396"
/inference="protein motif:COG:COG0438"
/note="KEGG: sus:Acid_6620 glycosyl transferase, group 1"
/codon_start=1
/transl_table=11
/product="glycosyltransferase-like protein"
/protein_id="YP_002478987.1"
/db_xref="GI:220903675"
/db_xref="GeneID:7284060"
/translation="MRNIIFCDQYGQLGGGQQVLMELVKAAQVSKFAVKVLLPAGPCA
DKLETLGVDVRRIPVCVLTQGKKDFTDILRFALYNMAVFFRNIKVLRSSDLIYINGNR
LLPVALLAEILLGRQAACHIHLNHGVMEKKLFRIFLRQHRTKAIVVPSEFIQRELEHY
DAAFVSPKVRMVENGLDARFSETAFEDRFSGRPLRHVGIVGRVSAEKGQDVLPALARQ
FPDMDFHVLGDAAFSSADFDAALRRESPTNVHFHGWVEDLPAKVREIGLQVCLVPSRC
PESTPGYSFEAAPLVPLQMAALSCLVLVRCLGALEDVAKNLQLACFDSDEGLAPIIEN
LRAQSAAELLAQCENSHMLAVSKYRHNAFHERLKELMHTLMPE"
misc_feature 482512..>483348
/locus_tag="Ddes_0396"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
misc_feature <482803..483582
/locus_tag="Ddes_0396"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
gene complement(483707..484981)
/locus_tag="Ddes_0397"
/db_xref="GeneID:7284061"
CDS complement(483707..484981)
/locus_tag="Ddes_0397"
/inference="protein motif:PFAM:PF00534"
/note="PFAM: glycosyl transferase group 1;
KEGG: bpy:Bphyt_4708 glycosyl transferase group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_002478988.1"
/db_xref="GI:220903676"
/db_xref="InterPro:IPR001296"
/db_xref="GeneID:7284061"
/translation="MNIIIDGHALGTLGGIERVVCDLASAMVRRGHQVTIFISEPLPA
RLMYPVDERVHFIVYTHNGRQGHLARFRQQVLSCSPDVCISPAADRRHLSWCAALWNS
GVPLVISEHSTPEDVEGRIWNRAERLAVMTAADAIHMLRPSCLPSLPDSLRGKARVIP
NAVNLPVLQRPPKDHPAIVSMGRLERDKQNHILIDAFAMLAQDFPQWHLDIWGVGPEQ
KRLEKQIQRLGVGNNAHIRGLTTKPEECYALADLLCQPSRHEAFPGAVVESMAARLPV
VGFAQCPGVNELVRHGETGLLAPKMSAESLAETLRPLMQSAAIREKMGNKGGEAAIPY
SPKIVYDAWEALLQDVILSQGKTNLQEAAFSSRIHDGQESQKMLRLLQHCMARPNVLV
ADGKLLRRLVFSSPWLTRRLRPFYDWLKGLCR"
misc_feature complement(483929..484981)
/locus_tag="Ddes_0397"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(483947..484960)
/locus_tag="Ddes_0397"
/note="This family is most closely related to the GT1
family of glycosyltransferases. AmSD in Erwinia amylovora
has been shown to be involved in the biosynthesis of
amylovoran, the acidic exopolysaccharide acting as a
virulence factor. This enzyme may be...; Region:
GT1_amsD_like; cd03820"
/db_xref="CDD:99990"
misc_feature complement(order(484187..484189,484253..484255,
484433..484441,484937..484939))
/locus_tag="Ddes_0397"
/note="putative ADP-binding pocket [chemical binding];
other site"
/db_xref="CDD:99990"
gene complement(485030..486088)
/locus_tag="Ddes_0398"
/db_xref="GeneID:7284062"
CDS complement(485030..486088)
/locus_tag="Ddes_0398"
/inference="protein motif:PFAM:PF00535"
/note="PFAM: glycosyl transferase family 2;
KEGG: tel:tll0993 probable glycosly transferase"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_002478989.1"
/db_xref="GI:220903677"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:7284062"
/translation="MNIQNTSHTPSITVLLPVFNGEQFIKEAVTSILAQSFTNFDLLI
INDGSTDGTGEILQRLAAKDPRIRIHQRENRGLIATLNEGIALCSSEFVARMDADDCA
LPHRLAVQYDYMTKHAETAVCSTGMEEYETGRTLTWEGYGEAVRARLLFGCCLYHPTI
LARRSALLAVGGYDAAMPCAEDYDLWMRLTEAGYSLAVLPQVLLRYRVHPHLSRAAYK
WQMGETTAHIQQRQLSLLGIAPTPRQMDRHQFCISHCPEISKKLKEAEAWLQHLVQAN
NRAGLYNREIFLQTVNEIKSDFVRASWQRDPGQFVRRVLRTFVKDYIYRLRLGATFEK
RIVNVARQLGFFSQNRKV"
misc_feature complement(485423..486061)
/locus_tag="Ddes_0398"
/note="Glycosyltransferase like family 2; Region:
Glyco_tranf_2_3; pfam13641"
/db_xref="CDD:205818"
misc_feature complement(485468..486052)
/locus_tag="Ddes_0398"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature complement(order(485792..485794,485798..485800,
485954..485956,486032..486034,486038..486040))
/locus_tag="Ddes_0398"
/note="active site"
/db_xref="CDD:132997"
gene complement(486258..487178)
/locus_tag="Ddes_0399"
/db_xref="GeneID:7284063"
CDS complement(486258..487178)
/locus_tag="Ddes_0399"
/inference="protein motif:PFAM:PF00535"
/note="PFAM: glycosyl transferase family 2;
KEGG: pca:Pcar_2592 glycosyltransferase domain protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_002478990.1"
/db_xref="GI:220903678"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:7284063"
/translation="MGTRMDDIIPISICIPCYNNPAGVKKLLDSILSQTFGTFECIIT
DDSADDRTKEVVKPFLADGRFTYVHNAKALGSPENWNYCASLAKGAYIKIMHHDDWFS
RPNALQQLYDCAVQSPGCGFIACGCSNCDTEGKILDAAMPDKRFLARLAADRAELFYA
NALRTPSTTLIRRDLFKPFDPKLVWLVDLEQYMRILEATSLAFLPVSLVNVTASSPDQ
ITRRCEYSLDVNLQEYVYVANILWGKSVPLRASLHMALVLARTLAANLYFLKAPIAMY
ALLPLSAGYWGAREVLKRALKWLTAEKQTP"
misc_feature complement(<486795..487127)
/locus_tag="Ddes_0399"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cd00761"
/db_xref="CDD:132997"
misc_feature complement(<486843..487127)
/locus_tag="Ddes_0399"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature complement(order(486885..486887,486891..486893,
487047..487049,487125..487127))
/locus_tag="Ddes_0399"
/note="active site"
/db_xref="CDD:132997"
gene complement(487187..488014)
/locus_tag="Ddes_0400"
/db_xref="GeneID:7284064"
CDS complement(487187..488014)
/locus_tag="Ddes_0400"
/inference="protein motif:PFAM:PF00535"
/note="PFAM: glycosyl transferase family 2;
KEGG: dvl:Dvul_3029 glycosyl transferase family protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_002478991.1"
/db_xref="GI:220903679"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:7284064"
/translation="MSQNAVSPMVAVIIATRNAAQGLALTLGSIAAQSCKDDIEVVVQ
DSESVDHTLDVARSYAAQLPLLRAASAPDDGVYDAWLKVIPSVRARWILFLGAGDTLA
HPETMQTVISQLEQCPDDKYFALGQVTILSAERELLHSISNDIDKMAAVLPYYNPIYH
AGVFTSSKFLKAHPFDASFKILGDYDFFCRHWGNGERAWQLHCLIAEAPLGGLSNSPK
FRTCHDAEIKRIRKGYFPRQYWRSRLYQACAGLLPKGCRQLVPASVKQMLKKILKLA"
sig_peptide complement(487955..488014)
/locus_tag="Ddes_0400"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.847) with cleavage site probability 0.595 at
residue 20"
misc_feature complement(487367..487981)
/locus_tag="Ddes_0400"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature complement(order(487721..487723,487727..487729,
487883..487885,487964..487966,487970..487972))
/locus_tag="Ddes_0400"
/note="active site"
/db_xref="CDD:132997"
gene complement(488037..488792)
/locus_tag="Ddes_0401"
/pseudo
/db_xref="GeneID:7284065"
gene complement(488810..489838)
/locus_tag="Ddes_0402"
/db_xref="GeneID:7284066"
CDS complement(488810..489838)
/locus_tag="Ddes_0402"
/inference="protein motif:PFAM:PF00535"
/note="PFAM: glycosyl transferase family 2;
KEGG: gur:Gura_1682 glycosyl transferase family protein"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_002478992.1"
/db_xref="GI:220903680"
/db_xref="InterPro:IPR001173"
/db_xref="GeneID:7284066"
/translation="MTPYISVVMSVRNGMPFLPEAVFSVLAQSFEDFEFIVMDNASVD
GSNEWVTAQQDKRIRLVRNEEDLGLSQSLNRGFSLARGKYIARMDADDISVPERLAVQ
AAYMDAHPELVVCGGEVEIFNETSSSLWEVPKGRDAILSTLLFAVPLAHPAVMYRAEA
WKSLELQYDRTLLLSQDFDMWRIIGLQMTKALDNMGACVLRYRMHGANLTSVMGDLAC
REWKEVAKRILTQFMAAAPSQAETDLHFVCAHGCAANAKELASCLAWLMELQNVNMRM
GWVAADVFERELLSRWALLCRRTKFKALLLALPLLARGWASGTRRRALALLLQEIACR
LRKKLLHT"
misc_feature complement(<489515..489838)
/locus_tag="Ddes_0402"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature complement(489206..489823)
/locus_tag="Ddes_0402"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature complement(order(489566..489568,489572..489574,
489725..489727,489803..489805,489809..489811))
/locus_tag="Ddes_0402"
/note="active site"
/db_xref="CDD:132997"
gene complement(489894..490652)
/locus_tag="Ddes_0403"
/db_xref="GeneID:7284067"
CDS complement(489894..490652)
/locus_tag="Ddes_0403"
/inference="protein motif:PFAM:PF08242"
/note="PFAM: Methyltransferase type 12;
KEGG: hypothetical protein"
/codon_start=1
/transl_table=11
/product="type 12 methyltransferase"
/protein_id="YP_002478993.1"
/db_xref="GI:220903681"
/db_xref="InterPro:IPR013217"
/db_xref="GeneID:7284067"
/translation="MIRFYQTEWFGIPFDSFASLSFFSLADKAFYEKFYDAFFNKFAG
YDALPEPWQAIKRQCAQAIAAHIPPVAAPKILSVGCGSGFVEHCLLQMRPNIQMHCND
SSDSPLRWIAQSLPEEQLHIGLVPECLPQGATFDVIYCNAFEYCLSNKTLVKLLSSLK
SWLAPGGRLILISASILDPADSPHTVRQYVDYLHDTCCNLLAHLRGAKPQQFWGWART
RKELEDLILRCGYTMDGQQQIAQLASSWLFCTKC"
misc_feature complement(490008..490427)
/locus_tag="Ddes_0403"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature complement(490146..490427)
/locus_tag="Ddes_0403"
/note="Methyltransferase domain; Region: Methyltransf_12;
pfam08242"
/db_xref="CDD:203886"
gene complement(490710..491555)
/locus_tag="Ddes_0404"
/db_xref="GeneID:7284068"
CDS complement(490710..491555)
/locus_tag="Ddes_0404"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: rpe:RPE_4247 glycosyl transferase, family 2"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478994.1"
/db_xref="GI:220903682"
/db_xref="GeneID:7284068"
/translation="MKWYSWFNPKAYLRKSRQLAEQYCEQRKQKMFLAQYNLAQHIEE
TRRVYAGLGLDFDAAQASLKEKLASCPALQEIDPVISCASEHWTFFAALAQSQRPIKR
ILELGTYNGETTHLLAKLFPDAQVTTVDLPATDPIFIASYGRQDPGFRQPFLEYRARM
LDVSNIELLEINSFLLPSLKLVPFDLIWVDACHEFPEVGWDMCNAYHLLQDDGLLMCD
DIYMNTAVPQGQTHATLQAVKALEQYRLIDLFFIIKRLDAEWSADPAARKHIAVARKP
KPSTR"
misc_feature complement(490890..491252)
/locus_tag="Ddes_0404"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(490986..490988,491037..491045,
491163..491168,491220..491240))
/locus_tag="Ddes_0404"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(491975..493225)
/locus_tag="Ddes_0405"
/db_xref="GeneID:7284069"
CDS complement(491975..493225)
/locus_tag="Ddes_0405"
/inference="protein motif:PFAM:PF01041"
/note="PFAM: DegT/DnrJ/EryC1/StrS aminotransferase;
KEGG: dvl:Dvul_2647 DegT/DnrJ/EryC1/StrS aminotransferase"
/codon_start=1
/transl_table=11
/product="DegT/DnrJ/EryC1/StrS aminotransferase"
/protein_id="YP_002478995.1"
/db_xref="GI:220903683"
/db_xref="InterPro:IPR000653"
/db_xref="GeneID:7284069"
/translation="MDDARLAVLQKRVAAGEEEGCGSAYAQAFCAALGGGYALPTASA
RMALHALLRHYGLRDGDEVLVTGFTCSVVLNAILRCGAAPRFVDIDRHTLGTSPESVE
AAITPRTKALIAQHTFGVPCAIDSLRALATHYHIKLIEDVAIAFGSKYQGKPLGAWGD
AAYFSTDHSKPLNSLIGGMLYTTDENLYERIFSEYQGWPHLPREKQQALLEQVRVERD
NFTPARYRWHNFAALFAGCDAPSPFLDADYTPWAVQGDYPYPAKMPTVLTTLGLEALR
QWPVVADERCHWFKKISEVFYRNNCGGMIPAGFQNIGKEVVPLRFAFCLPAVCGPLRE
NKGLWRAVNAFFPANWIWFQDPVVCRATDITAYGYTPGTCPVAEEVGRGIVTIPLDVP
SPYADRFMQNVENLCRELQRLPRA"
misc_feature complement(<492653..493156)
/locus_tag="Ddes_0405"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(492716..492718,492731..492733,
492794..492796,492803..492805,492881..492883,
493082..493084,493091..493096))
/locus_tag="Ddes_0405"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(492716..492718)
/locus_tag="Ddes_0405"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(493386..495215)
/locus_tag="Ddes_0406"
/db_xref="GeneID:7284070"
CDS complement(493386..495215)
/locus_tag="Ddes_0406"
/inference="similar to AA sequence:KEGG:Dvul_2646"
/note="KEGG: dvl:Dvul_2646 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478996.1"
/db_xref="GI:220903684"
/db_xref="GeneID:7284070"
/translation="MRIGVAAELQHANAADVLLWDSFSDTVPCVEKLVQEYFPVIRQE
FLQFICEIGRHAVDGTTLSEQFRLLTQFSAWEYSSLFERHPAYFGDALFTIFKLRAVE
LYCQKVQPHEVHLCGCDAIAWHISDICKSLQIAFVHSPSSPNRREGSDSPSCGVMAFA
RKSASMARQLHGWWKQVRSQFPTQPVVQRSKGMILGTWFPNIDQKSAQNGRFRSKYWE
AAHDLIDSAATPQHWFFIYADSEQNIPGHIAARDRFAANAPNADMTFLEECLTPCDAL
RAFGLWLRSAWRSNIMGNRVAGAFNWPHSALNVFSLLQGMWQESTSGWHLLRMLLHLQ
AIKRFCKLVGPQERVLTSSELQWWERMLFREQRKLGCSKNFAVQHSIIRPADFRFFCA
PEMWQDKNFTNAMPDVFFCNGRAGLEAMRASGFPDDRLGLVEATRFLYLAKAARYAVA
SPSRKLLVVTSYFEGETRRMLEMLAAAMKERHLSLFDNVQIKAHPDLPVEHMLAELFT
DPPAVVTQPVESYLTEDTVVFAAAGTSVTLLVPYMGLPMVVAGSDGDFEMGCLDTVEG
ICYARSAGELLDGLTTSSRSTLPEDYFCLDASLARWKTMLTSQ"
misc_feature complement(493392..495167)
/locus_tag="Ddes_0406"
/note="surface carbohydrate biosynthesis protein, LIC13510
family; Region: O_ant_LIC13510; TIGR04326"
/db_xref="CDD:213939"
gene complement(495200..495871)
/locus_tag="Ddes_0407"
/db_xref="GeneID:7284071"
CDS complement(495200..495871)
/locus_tag="Ddes_0407"
/inference="protein motif:PFAM:PF00132"
/note="PFAM: transferase hexapeptide repeat containing
protein;
KEGG: dvl:Dvul_2637 hexapaptide repeat-containing
transferase"
/codon_start=1
/transl_table=11
/product="transferase hexapeptide repeat containing
protein"
/protein_id="YP_002478997.1"
/db_xref="GI:220903685"
/db_xref="InterPro:IPR001451"
/db_xref="GeneID:7284071"
/translation="MNLKNKLISLLFNTLKMCRNVYIFFSTQYNTIFFKLWAIASRVP
FGSKLQCCGRVILDCLPATVSLGNNIIFVSDSVRCTATTVYGPSRLRTFAPTARIEIA
DGVGMNAISITARSRTIHIGENTMFAPNCTVVDSDFHSLWPPEGRICNPGMEQDADVH
IGKNCWIGMQSIILKGVTIGDGSVVAAGSVVTRDIPPNVLAAGVPARVLRPLNDNEGN
TCVLV"
misc_feature complement(495251..495718)
/locus_tag="Ddes_0407"
/note="sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family; Region: NeuD_NnaD;
TIGR03570"
/db_xref="CDD:211842"
misc_feature complement(495245..495580)
/locus_tag="Ddes_0407"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature complement(order(495260..495262,495308..495310,
495365..495367,495374..495376,495380..495382,
495449..495457,495476..495478,495494..495496,
495500..495502,495533..495535,495554..495556,
495560..495562))
/locus_tag="Ddes_0407"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature complement(order(495257..495259,495263..495268,
495293..495298,495311..495316,495350..495352,
495365..495370,495374..495376,495449..495451,
495455..495457,495548..495550,495554..495556))
/locus_tag="Ddes_0407"
/note="active site"
/db_xref="CDD:100053"
misc_feature complement(order(495455..495457,495548..495550,
495554..495556))
/locus_tag="Ddes_0407"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature complement(order(495245..495247,495257..495259,
495263..495268,495272..495274,495293..495298,
495311..495316,495320..495322,495350..495352,
495365..495370,495374..495376,495449..495451,
495455..495457))
/locus_tag="Ddes_0407"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene complement(496002..497828)
/locus_tag="Ddes_0408"
/db_xref="GeneID:7284072"
CDS complement(496002..497828)
/locus_tag="Ddes_0408"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: mag:amb0137 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478998.1"
/db_xref="GI:220903686"
/db_xref="GeneID:7284072"
/translation="MNLYLSSLDFDVDKFGHALGPWCYTGVMDYEKLQALVASSLLPP
PFFYFSDFLQQMDYLDACTTRVALKVGNYLNEKHQTKFSDFFWAFTQRGWLGHITSCL
YDCYLRINQIELSNVSYEYTGIEIKELRPENVLHLVNSLVRSQSLTAWLASEMIAYIA
PANCRKEQTISGCLTQSDHDTGQFEALPLAQLQLPTSPLHALYSWIKRLFHISQYPDM
MLHNYQLGNGKIFLIHWLTSRKKSRSSISHFSKKNMVNRLTATKNSFEDERFENLLFK
TAVKLIPNIYWDFDAFGQVLEDVNSAIKKSTNKKILFPTPGLIYDEKAEIFCALKKEQ
DNALIVMAQHGSFYGTLKKYQFIEQEEFEKSDIYCTWGWSTVEDVENNFYPLPVFFSK
QRTARSEHDDGSILFVVDDEMVNFHRIRSGGYYSDQHIALLQQKFDFFGTLDDTTRKN
IIYQAYPADSPTLQTHAFFEQTFPELKITNQSFQEHFKRCRLIVMPYPGTTMHFALAA
NIPTVLFWEKDFFVFSRQFQHIADCMHECGLLFYNPVDAARAVETIYNDPEKWMRDRD
RRACVKLFQRHYAWTEKNSVPYYKSFLNDVKKFYRATTCNLK"
misc_feature complement(496050..497822)
/locus_tag="Ddes_0408"
/note="putative transferase, LIC12162 family; Region:
o_ant_LIC12162; TIGR04331"
/db_xref="CDD:213944"
gene complement(498067..498759)
/locus_tag="Ddes_0409"
/db_xref="GeneID:7284073"
CDS complement(498067..498759)
/locus_tag="Ddes_0409"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002478999.1"
/db_xref="GI:220903687"
/db_xref="GeneID:7284073"
/translation="MMGGGDSAVEWAKEYQSEYDSFPPQNGERIGVLDFYEAWPHIKY
LEKILSEEKTPITVIQLGASSGREIAYFSQKYPLHHFVFTDIFDSVVQYAKETFHFKN
LTFVASSAENLHLLTFSTQNKCVIFSNGSAQYVFPEHLDIMFSRLACNCNCEVDVIVL
EPGSDGESNPQEIEGSLPRGHFSYTHNYRYYAHKNGFSSLEWRKISPYQGPEFCENNQ
TCHLFGVFIKKT"
misc_feature complement(498316..498588)
/locus_tag="Ddes_0409"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(499219..501051)
/locus_tag="Ddes_0410"
/db_xref="GeneID:7284074"
CDS complement(499219..501051)
/locus_tag="Ddes_0410"
/inference="protein motif:PFAM:PF00005"
/note="PFAM: ABC transporter related;
SMART: AAA ATPase;
KEGG: cpb:Cphamn1_0373 ABC transporter-related protein"
/codon_start=1
/transl_table=11
/product="ABC transporter-like protein"
/protein_id="YP_002479000.1"
/db_xref="GI:220903688"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR017940"
/db_xref="GeneID:7284074"
/translation="MLNPQLSQIFRAIYTRLSKNLQSRFWRVMIFSVLVALTEFVLTA
AVSLLGVVLASPQTIAQSGIMHKLVALCPAMLPITEDPRLLLIVLLVGLCAAVFVKSI
ALAALTWKQSNFSQLVNLEMGRRLFHGFVHAPYLWHVSQRVSDLAAMLAWRNGIGVYC
FAVVQALGQLAVALLLVLVVMIATPLAGVVVFAGTALCAYVSFRFSRRLVNKCSQEMT
LAQRDSGRVSHTALYGIRELMIYRQQTPFESSYVQYEGRAAHAQALLPVCHPLPSWTL
EWVGMVLLLGAVILLYWQNASVARTVGTLTLLAAVAWRLLPTMNKLVQQMLMMQQQIP
QIEPVLRQLDEVAALPHTDTDTARDCPLHEELQLQNVSFRYPSVSADKPDALRNLNLR
ISRGSMVGFVGPSGAGKSTIVGLLTGLFPPTDGNIFVDGRPMDNALREGWVRRVGYVP
QSPFLLNSSIAENIAFSHWGAAIDRERVQQCCRMAAMDFVDGLEQNIDTVIGERGVRL
SGGQVQRVAIARALYNTPQFILFDEATSALDGAAEQAIQQTINSLREHMTLVVVAHRL
STVEACDFVYWIDGGEVRMAGKPGTVLPEYEAYLAAKNEEGDKG"
sig_peptide complement(500869..501051)
/locus_tag="Ddes_0410"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.869) with cleavage site probability 0.418 at
residue 61"
misc_feature complement(499249..499956)
/locus_tag="Ddes_0410"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:31319"
misc_feature complement(499291..499956)
/locus_tag="Ddes_0410"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(499822..499845)
/locus_tag="Ddes_0410"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(499360..499362,499453..499458,
499699..499701,499819..499827,499831..499836))
/locus_tag="Ddes_0410"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(499699..499710)
/locus_tag="Ddes_0410"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(499501..499530)
/locus_tag="Ddes_0410"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(499453..499470)
/locus_tag="Ddes_0410"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(499435..499446)
/locus_tag="Ddes_0410"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(499354..499374)
/locus_tag="Ddes_0410"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(501045..501989)
/locus_tag="Ddes_0411"
/db_xref="GeneID:7284075"
CDS complement(501045..501989)
/locus_tag="Ddes_0411"
/inference="protein motif:PFAM:PF01370"
/note="PFAM: NAD-dependent epimerase/dehydratase;
KEGG: hypothetical protein; K02377 GDP-L-fucose synthase"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_002479001.1"
/db_xref="GI:220903689"
/db_xref="InterPro:IPR001509"
/db_xref="GeneID:7284075"
/translation="MDKDSLIYVAGHRGLAGSAICRALARDGYENLLTRTHAELDLCD
QAAVRTFFAQYRPAIVVLAAAKVGGIHANATYPAEFIYQNLQIQNNVIDSAYRNDCKK
LLFLGSSCIYPKMCPQPIKEEYLLTGPLEPTNDAYALAKIAGIKMCQAYRKQYGFDAI
SAMPTNLYGPGDNYHPENSHVIPALIRRFHEAKMAGAEKVTIWGTGNALREFLYVDDM
AEACIFLLKNYSDFEHVNAGCGSDISIIDTARLIARVVGFEGSIDTDPTKPDGTPRKL
MASGKLFGMGWKPRVEFEEGLRATYRDFCARNGAGAAC"
misc_feature complement(501075..501971)
/locus_tag="Ddes_0411"
/note="GDP-fucose synthetase, extended (e) SDRs; Region:
GDP_FS_SDR_e; cd05239"
/db_xref="CDD:187550"
misc_feature complement(501072..501968)
/locus_tag="Ddes_0411"
/note="GDP-4-keto-6-deoxymannose-3,
5-epimerase-4-reductase; Region: PLN02725"
/db_xref="CDD:178326"
misc_feature complement(order(501489..501491,501495..501500,
501567..501569,501579..501581,501666..501674,
501729..501731,501789..501791,501795..501803,
501861..501872,501879..501881,501942..501953,
501957..501959))
/locus_tag="Ddes_0411"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187550"
misc_feature complement(order(501567..501569,501579..501581,
501666..501668,501738..501740))
/locus_tag="Ddes_0411"
/note="active site"
/db_xref="CDD:187550"
misc_feature complement(order(501360..501362,501384..501386,
501435..501437,501492..501494,501579..501581,
501666..501668))
/locus_tag="Ddes_0411"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187550"
gene complement(501995..503143)
