LOCUS NC_014543 4073 bp DNA circular CON 24-APR-2023
DEFINITION Escherichia coli O26:H11 str. 11368 plasmid pO26_4, complete
sequence.
ACCESSION NC_014543
VERSION NC_014543.1
DBLINK BioProject: PRJNA224116
BioSample: SAMD00060955
Assembly: GCF_000091005.1
KEYWORDS RefSeq.
SOURCE Escherichia coli O26:H11 str. 11368
ORGANISM Escherichia coli O26:H11 str. 11368
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1
AUTHORS Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K.,
Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M.
and Hayashi,T.
TITLE Comparative genomics reveal the mechanism of the parallel evolution
of O157 and non-O157 enterohemorrhagic Escherichia coli
JOURNAL Proc Natl Acad Sci U S A 106 (42), 17939-17944 (2009)
PUBMED 19815525
REFERENCE 2 (bases 1 to 4073)
AUTHORS Hattori,M., Toh,H., Oshima,K., Yamashita,A., Hayashi,T., Ogura,Y.
and Ooka,T.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2008) Contact:Masahira Hattori University of
Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha,
Kashiwa, Chiba 277-8562, Japan URL
:http://www.cb.k.u-tokyo.ac.jp/hattorilab/
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
AP010957.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 04/24/2023 02:00:00
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,000
CDSs (total) :: 5,866
Genes (coding) :: 5,548
CDSs (with protein) :: 5,548
Genes (RNA) :: 134
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
tRNAs :: 101
ncRNAs :: 11
Pseudo Genes (total) :: 318
CDSs (without protein) :: 318
Pseudo Genes (ambiguous residues) :: 0 of 318
Pseudo Genes (frameshifted) :: 117 of 318
Pseudo Genes (incomplete) :: 188 of 318
Pseudo Genes (internal stop) :: 78 of 318
Pseudo Genes (multiple problems) :: 59 of 318
Pseudo Genes (short protein) :: 3 of 318
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4073
/organism="Escherichia coli O26:H11 str. 11368"
/mol_type="genomic DNA"
/strain="11368"
/serovar="O26:H11"
/db_xref="taxon:573235"
/plasmid="pO26_4"
/note="enteropathogenic Escherichia coli"
gene 1..594
/locus_tag="ECO26_RS35020"
/old_locus_tag="ECO26_p4-1"
CDS 1..594
/locus_tag="ECO26_RS35020"
/old_locus_tag="ECO26_p4-1"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_012537770.1"
/translation="MSGRKFGRLPNWWARSSWLVNNVRSNEIGGGIASMKCLLALSVL
IDFHSRTASVSFTGMERLTGLSRPMIVKGVAKLEKDGLIKIDREMFVNSYELTVQPND
DRWAKVPVDTIRKKLNTISNRGMAPFVALKLYLTIISLRYQSNNTVKVTHETLRSYTG
VQPNQIRFGLDVLYCSRLIHLQPKEDRESNIYEIIGL"
gene complement(605..796)
/locus_tag="ECO26_RS35590"
CDS complement(605..796)
/locus_tag="ECO26_RS35590"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001479926.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_225879636.1"
/translation="MCLMGTVCAQTVRHSFSCIAMQWAENDPDAFFRFSLGKTSLFAV
SASESRSVRFSGARNATLW"
gene 1367..1561
/locus_tag="ECO26_RS30620"
/old_locus_tag="ECO26_p4-2"
CDS 1367..1561
/locus_tag="ECO26_RS30620"
/old_locus_tag="ECO26_p4-2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001041627.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Rop family plasmid primer RNA-binding protein"
/protein_id="WP_001041633.1"
/translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHEL
AEELQNSIQVRFETESETGT"
gene 2227..2340
/locus_tag="ECO26_RS35595"
CDS 2227..2340
/locus_tag="ECO26_RS35595"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005761324.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation protein"
/protein_id="WP_071531573.1"
/translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGN"
gene 2566..3480
/locus_tag="ECO26_RS30625"
/old_locus_tag="ECO26_p4-3"
CDS 2566..3480
/locus_tag="ECO26_RS30625"
/old_locus_tag="ECO26_p4-3"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001448734.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Abi family protein"
/protein_id="WP_001448734.1"
/translation="MPNTIHYPHVIPFISQGKINAIKSTFGNNLSDRECYGIYIWSQK
ASSAIYPLLQQLEVTLRNSIDKEATKLIGQKWWDNVYTDTSKSKHGDFIHNINKAKRR
YENEFKKKNPSMANTKIIAPHDDIIAHTDFYTWQAVLSDAFHTQSRSEASRALWPRLT
YRVLKGLDRSKDEGTARIDFLNELNEIRNYRNRLSHNDCIWIKIHSKNLQSAVETIRE
KINKIEGLIKTINPQVHLSLTKWGSFYHAKRICSQKEAELHLGKGIINSTTDEMNTIL
DQLYALTADGKLTGVVKRNTNNIAFHKF"
CONTIG join(AP010957.1:1..4073)
//
