LOCUS NC_014932 1522743 bp DNA circular BCT 24-DEC-2012
DEFINITION Bartonella clarridgeiae 73, complete genome.
ACCESSION NC_014932
VERSION NC_014932.1 GI:319898193
DBLINK Project: 62131
BioProject: PRJNA62131
KEYWORDS complete genome.
SOURCE Bartonella clarridgeiae 73
ORGANISM Bartonella clarridgeiae 73
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bartonellaceae; Bartonella.
REFERENCE 1 (bases 1 to 1522743)
AUTHORS Engel,P., Salzburger,W., Liesch,M., Chang,C.C., Maruyama,S.,
Lanz,C., Calteau,A., Lajus,A., Medigue,C., Schuster,S.C. and
Dehio,C.
TITLE Parallel evolution of a type IV secretion system in radiating
lineages of the host-restricted bacterial pathogen Bartonella
JOURNAL PLoS Genet. 7 (2), E1001296 (2011)
PUBMED 21347280
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1522743)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1522743)
AUTHORS Engel,P.
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2009) Engel P., Biozentrum, University of Basel,
Infection Biology, Klingelbergstr. 70, 4056 Basel, SWITZERLAND
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FN645454.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1522743
/organism="Bartonella clarridgeiae 73"
/mol_type="genomic DNA"
/strain="73"
/db_xref="taxon:696125"
gene 1..834
/locus_tag="BARCL_0001"
/db_xref="GeneID:10138723"
CDS 1..834
/locus_tag="BARCL_0001"
/function="unknown"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158287.1"
/db_xref="GI:319898194"
/db_xref="GeneID:10138723"
/translation="MVKKKSFHLHMISDATGETLISAGRAVASQYKIRQAIEHIYPMI
RSKIQLQRVLNEIQQEPGIVLYTIIDKEIKQLIDEACTKMSIPCVDILNPILNGFQSY
LGTPKNLRVSAQHELNADYFRRIKALDFTIEHDDGQSPDSLLDADVILIGISRTSKTP
TSIYLANRGIKTANVPLVKGIDLPQTLFEANNALIVGFIASAERISHIRENRNLGDSF
AIESYTDRIRIAEELIYTKRICERFCWPIIDVTRRSIEETAAAVFELLSQFREGKEEK
I"
misc_feature 7..810
/locus_tag="BARCL_0001"
/note="PEP synthetase regulatory protein; Provisional;
Region: PRK05339"
/db_xref="CDD:180026"
gene 831..1427
/locus_tag="BARCL_0002"
/db_xref="GeneID:10137276"
CDS 831..1427
/locus_tag="BARCL_0002"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="Maf-like protein; septum formation protein"
/protein_id="YP_004158288.1"
/db_xref="GI:319898195"
/db_xref="GeneID:10137276"
/translation="MIKKSLILASLSPYRAQLLKKAGLKFSVEGASFDERKIEKTAKI
KTPEKLCSFLANMKAKNVSDRFPNALVIGCDQVFDFEGQIFHKVKNDQEARQRLHMLS
GKKHSLHSAIALVQNGKKIWSEVFSAHMTVRPLSLKFVENYLTRVGADVLKSTGIYQI
EGEGIHLFEKIEGDFFTIVGLPLLPLLIKLRHLGVIDS"
misc_feature 846..1412
/locus_tag="BARCL_0002"
/note="Maf-like protein; Region: Maf; pfam02545"
/db_xref="CDD:202278"
misc_feature 846..1370
/locus_tag="BARCL_0002"
/note="Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide-
or...; Region: Maf; cd00555"
/db_xref="CDD:29954"
misc_feature order(858..860,873..875,933..935,1002..1004,1053..1055,
1089..1091)
/locus_tag="BARCL_0002"
/note="active site"
/db_xref="CDD:29954"
misc_feature order(984..986,1188..1205)
/locus_tag="BARCL_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29954"
gene 1452..1904
/gene="aroE"
/locus_tag="BARCL_0003"
/pseudo
/db_xref="GeneID:10137277"
misc_feature 1452..1904
/gene="aroE"
/locus_tag="BARCL_0003"
/inference="ab initio prediction:AMIGene:2.0"
/note="shikimate 5-dehydrogenase"
/pseudo
/db_xref="PSEUDO:CBI75684.1"
gene 1963..2076
/gene="aroE"
/locus_tag="BARCL_0004"
/pseudo
/db_xref="GeneID:10137990"
misc_feature 1963..2076
/gene="aroE"
/locus_tag="BARCL_0004"
/inference="ab initio prediction:AMIGene:2.0"
/note="shikimate 5-dehydrogenase"
/pseudo
/db_xref="PSEUDO:CBI75685.1"
gene 2073..2666
/gene="coaE"
/locus_tag="BARCL_0005"
/db_xref="GeneID:10137991"
CDS 2073..2666
/gene="coaE"
/locus_tag="BARCL_0005"
/EC_number="2.7.1.24"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_004158289.1"
/db_xref="GI:319898196"
/db_xref="GeneID:10137991"
/translation="MKIIGLTGSIAMGKSTTADFFKQAGVPVFSADEAVHQLYRNELT
ISLIERAFPGVIENGQVNRLKLSEILINNIEKLKILEEIIHPLVQKKEREFINIARQQ
KKKLVVLDIPLLFETKSENRVNSVVVVSSPPEIQKARAMNRPNMNEEKFLIINTKQVS
DKQKRKYADFVIDTGKDLENTRQQVLKVIKSLLKDDS"
misc_feature 2073..2663
/gene="coaE"
/locus_tag="BARCL_0005"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:30586"
misc_feature 2079..2609
/gene="coaE"
/locus_tag="BARCL_0005"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:30195"
misc_feature order(2091..2093,2166..2168,2325..2327,2406..2411,
2544..2546)
/gene="coaE"
/locus_tag="BARCL_0005"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30195"
misc_feature order(2094..2102,2109..2114,2487..2489,2592..2594)
/gene="coaE"
/locus_tag="BARCL_0005"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:30195"
gene 2680..3387
/gene="dnaQ"
/locus_tag="BARCL_0006"
/db_xref="GeneID:10138035"
CDS 2680..3387
/gene="dnaQ"
/locus_tag="BARCL_0006"
/EC_number="2.7.7.7"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type e : enzyme"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_004158290.1"
/db_xref="GI:319898197"
/db_xref="GeneID:10138035"
/translation="MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNP
QGVVIPDEVVAIHGLTNERLKDEKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAEL
ERVNKPLVSINHVIDTLAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILA
DVYIELIGGKQGIFGFDNCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQEKDMHAN
LIKKIGDKALWNHFKII"
misc_feature 2683..3360
/gene="dnaQ"
/locus_tag="BARCL_0006"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature 2686..3180
/gene="dnaQ"
/locus_tag="BARCL_0006"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature order(2698..2709,2713..2718,2833..2838,2845..2850,
2944..2949,2953..2961,3073..3078,3118..3120,3127..3129,
3142..3144)
/gene="dnaQ"
/locus_tag="BARCL_0006"
/note="active site"
/db_xref="CDD:99835"
misc_feature order(2698..2709,2713..2718,2833..2838,2845..2850,
2944..2949,2953..2958,3073..3078,3118..3120,3127..3129,
3142..3144)
/gene="dnaQ"
/locus_tag="BARCL_0006"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature order(2698..2700,2704..2706,2959..2961,3127..3129,
3142..3144)
/gene="dnaQ"
/locus_tag="BARCL_0006"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene 3694..6600
/gene="polA"
/locus_tag="BARCL_0007"
/db_xref="GeneID:10138083"
CDS 3694..6600
/gene="polA"
/locus_tag="BARCL_0007"
/EC_number="2.7.7.7"
/function="8.1 : DNA replication, recombination, and
repair"
/function="16.9 : Replicate"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type e : enzyme"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_004158291.1"
/db_xref="GI:319898198"
/db_xref="GeneID:10138083"
/translation="MKANDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNM
LWKLLCDARNTAIGIVPTHVAIIFDYSSNTFRKQIYPQYKANRTAPPEDLVPQFALIR
QATRAFNLPCIEKEGFEADDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDG
MKDKHIGISEVMEKWGVMPEKMVDFQALTGDPTDNIPGVPGIGPKIAAQLLDQFGSLE
LLLQRVTEIKQIKRRENIQAYSEQAKISRELVKLKKDVPIDKSLDHFILEPQDGPRLI
AFLKAMEFTALTRRVAKETSCDAAVIDALDIDIEWEETTCEADLNVKEDNKVLFHDFS
ENSPQILAQKRKDQTLTQKIARDAYKTILDEEILKEWLLEAEKQGYFAFDTETTSLDP
MQAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRIVPQIETQKALALLKPILENQA
ILKIGQNIKYDWLVMKQYDIVMRSFDDTMLLSYALEAGISTHGIDVLSERWLGHKPIT
YKDLTYNGKKIVSFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDR
PLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGERFNIASPKQLGDI
LFGKMGLPGGAKTKNGQWSTSAQTLEELATEGHILPRKIVDWRQLAKLKSTYTDALPS
YILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSA
DYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINF
GIIYGISSFGLANQLGISRKEAGNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFG
RRIHYPEIKTANPQIRAFNERAAINAPIQGSAADIIRRAMIQVENALEKEKLSAKMLL
QVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEVKVIAAQNWNEAH"
misc_feature 3706..6597
/gene="polA"
/locus_tag="BARCL_0007"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:180237"
misc_feature 3712..4212
/gene="polA"
/locus_tag="BARCL_0007"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(3724..3726,3898..3900,4048..4050,4054..4059,
4123..4125,4129..4131)
/gene="polA"
/locus_tag="BARCL_0007"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(3724..3726,4054..4056,4123..4125)
/gene="polA"
/locus_tag="BARCL_0007"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 3916..3954
/gene="polA"
/locus_tag="BARCL_0007"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(4048..4050,4057..4059)
/gene="polA"
/locus_tag="BARCL_0007"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(4123..4125,4129..4131)
/gene="polA"
/locus_tag="BARCL_0007"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 4228..4449
/gene="polA"
/locus_tag="BARCL_0007"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(4258..4281,4285..4314,4318..4329)
/gene="polA"
/locus_tag="BARCL_0007"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(4264..4266,4273..4275)
/gene="polA"
/locus_tag="BARCL_0007"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 4813..5415
/gene="polA"
/locus_tag="BARCL_0007"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature order(4843..4854,4861..4863,5059..5064,5068..5076,
5170..5175,5218..5223,5290..5292,5302..5304)
/gene="polA"
/locus_tag="BARCL_0007"
/note="active site"
/db_xref="CDD:176651"
misc_feature order(4843..4845,4849..4851,5074..5076,5290..5292,
5302..5304)
/gene="polA"
/locus_tag="BARCL_0007"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature order(4846..4854,4861..4863,5059..5064,5068..5073,
5170..5175,5218..5223,5290..5292,5302..5304)
/gene="polA"
/locus_tag="BARCL_0007"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature 5440..6585
/gene="polA"
/locus_tag="BARCL_0007"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(5692..5694,5704..5706,5713..5718,5791..5799,
5803..5805,5809..5820,5914..5919,6001..6003,6061..6063,
6073..6075,6325..6327,6346..6348,6439..6447)
/gene="polA"
/locus_tag="BARCL_0007"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(5692..5694,5704..5706,5713..5718,5791..5799,
5803..5805,5809..5820,6097..6099,6322..6327,6334..6336,
6346..6348,6439..6447)
/gene="polA"
/locus_tag="BARCL_0007"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(5914..5919,5923..5925,6001..6003,6061..6063,
6073..6075,6445..6447)
/gene="polA"
/locus_tag="BARCL_0007"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene complement(6597..7478)
/locus_tag="BARCL_0008"
/db_xref="GeneID:10138413"
CDS complement(6597..7478)
/locus_tag="BARCL_0008"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158292.1"
/db_xref="GI:319898199"
/db_xref="GeneID:10138413"
/translation="MIKQYKITKKLKFRWPLIQKKFHNSLLKISYNRPSYQKNLINRN
DNYDLTIASYNIHKCVGVDRIFNPTRIVRVIAELQTDILALQEADKRFGERTGLVDLQ
LLKAETGLIPVPLNTMSPNGHGWHGNALFLRQGRIHNISQITLPGFEPRGAIIVELKM
KSGFIRVIAAHFGLLRHSRNQQVKMLLALLKKYSVMPTLLIGDLNEWRNGKGSSLNFF
SSYFDVTLGNVPSFPSRFPFLALDRIFAFPHQLVTNVESHYSPLARIASDHLPIKAYL
NLAKAMATLKHKMNEKN"
misc_feature complement(6642..7328)
/locus_tag="BARCL_0008"
/note="Metal-dependent hydrolase [General function
prediction only]; Region: ElsH; COG3568"
/db_xref="CDD:33370"
misc_feature complement(order(6672..6677,6753..6755,6864..6866,
6870..6872,6966..6968,7218..7220,7314..7316))
/locus_tag="BARCL_0008"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature complement(order(6675..6677,7218..7220))
/locus_tag="BARCL_0008"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature complement(order(6672..6674,6864..6866,6966..6968))
/locus_tag="BARCL_0008"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
gene complement(7572..8345)
/locus_tag="BARCL_0009"
/db_xref="GeneID:10137278"
CDS complement(7572..8345)
/locus_tag="BARCL_0009"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function; PubMedId : 15919996"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158293.1"
/db_xref="GI:319898200"
/db_xref="GeneID:10137278"
/translation="MADFKNLRSVSASHADASIDQGLRSYMLGVYNTMAIGLLITAAA
AYAIASLVTTTDMNQAAAQINGSVYLTPFGVTFYMSPFSYVIMFAPLVAVLFLTFKIN
TLSTSVARSLFFAYATLVGLSLSSIILRYTPESIVQTFFITSAAFGSLSLYGYTTKRD
LTAVGSFLFMGLIGLMLAAIVNIFLGSSALQFAISVIGILVFAGLTAYNTQNIKLMYY
EGDGDDTRGRKIIMGALNLYLDFINMFVFLLQFLGSNRD"
misc_feature complement(7587..8135)
/locus_tag="BARCL_0009"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene complement(9129..9647)
/gene="lspA"
/locus_tag="BARCL_0010"
/db_xref="GeneID:10137279"
CDS complement(9129..9647)
/gene="lspA"
/locus_tag="BARCL_0010"
/EC_number="3.4.23.36"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type e : enzyme"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_004158294.1"
/db_xref="GI:319898201"
/db_xref="GeneID:10137279"
/translation="MQGQKMTRKSLLFLFFTLIFTVGLDQGIKYWVMHTIQLGAEIPI
LSFISLYHVHNSGIAFSFLSSYPHWGIIALTLIIIVFLLWLWKNTENDKFLSYFGISF
IIGGAIGNLIDRIRFHYVIDYILFHINGVFSFAVFNLADTFITLGAVAVLIDEFRILT
KKKHYPENTSFE"
misc_feature complement(9159..9632)
/gene="lspA"
/locus_tag="BARCL_0010"
/note="lipoprotein signal peptidase; Provisional; Region:
PRK14795"
/db_xref="CDD:173256"
misc_feature complement(9168..9584)
/gene="lspA"
/locus_tag="BARCL_0010"
/note="lipoprotein signal peptidase; Provisional; Region:
PRK14787"
/db_xref="CDD:173248"
gene complement(9629..10477)
/locus_tag="BARCL_0011"
/db_xref="GeneID:10138287"
CDS complement(9629..10477)
/locus_tag="BARCL_0011"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_004158295.1"
/db_xref="GI:319898202"
/db_xref="GeneID:10138287"
/translation="MYKQKTGKVKEITSLSNPIIKDLKALNKKKNRNREGIFTAEGLK
LVIDALNLGWTIQTLIVSKNSLNNTIIENAAANTIANGGSVIKASQKVLESITHRDNP
QKVVGIFKQQWHSIKTIIRRVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGET
TDPFSLETVRATMGSIFSIPLYRCNESAFLNWSTNFKGMIVGTHLKGSVDYRAIDFKN
GPIILLMGNEQKGLSDVLANHCNNLARIPQCGYADSLNLAVATALMLYEIRRPYLNLE
ICKDKR"
misc_feature complement(9668..10444)
/locus_tag="BARCL_0011"
/note="rRNA methylases [Translation, ribosomal structure
and biogenesis]; Region: SpoU; COG0566"
/db_xref="CDD:30912"
misc_feature complement(10145..10360)
/locus_tag="BARCL_0011"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; smart00967"
/db_xref="CDD:198035"
misc_feature complement(9680..10105)
/locus_tag="BARCL_0011"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene complement(10480..11424)
/locus_tag="BARCL_0012"
/db_xref="GeneID:10137280"
CDS complement(10480..11424)
/locus_tag="BARCL_0012"
/EC_number="2.1.1.64"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_004158296.1"
/db_xref="GI:319898203"
/db_xref="GeneID:10137280"
/translation="MTLNMPVQCFQPRSSNVYSREKLPFILETGASADYALIDSGNGK
KLERYGSYRIIRPESQALWEPALSQENWANADAIFTGNRDEEGIGRWYFPKKPLGKTW
PLSWNGLSFLGRFTSFRHVGVFPEQDAHWRSLEEQIIKTNRSVKLLNLFGYTGIASLI
GARSGAIVTHVDASKKAIVWAKANQEKAGLLDRPIRWICDDAVKFVERELRRQKSYDL
ILLDPPTYGRGPHNEIWQLFDHLPTMIKNCRKLLSNKPLAVILTVYSIRASFYTFHTL
MRDVFTNLGGTIESGELILREESAGRALSTSLFSRWIA"
misc_feature complement(10486..11397)
/locus_tag="BARCL_0012"
/note="Predicted SAM-dependent methyltransferases [General
function prediction only]; Region: COG1092"
/db_xref="CDD:31289"
misc_feature complement(10633..10989)
/locus_tag="BARCL_0012"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(10759..10761,10819..10827,10906..10911,
10960..10977))
/locus_tag="BARCL_0012"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(11567..11878)
/locus_tag="BARCL_0013"
/db_xref="GeneID:10137281"
CDS complement(11567..11878)
/locus_tag="BARCL_0013"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158297.1"
/db_xref="GI:319898204"
/db_xref="GeneID:10137281"
/translation="MIIKRILLAVILTPITVFLIGFIVANRQVVILKLNPLQNNSEYF
TYQAPLFVWLFIFFCFGIFLSSIINWFAQHKNRKALKESKAEIEKLKISIANKSNIMA
L"
gene complement(11894..12172)
/gene="ihfB"
/locus_tag="BARCL_0014"
/db_xref="GeneID:10137282"
CDS complement(11894..12172)
/gene="ihfB"
/locus_tag="BARCL_0014"
/function="8.1 : DNA replication, recombination, and
repair"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type r : regulator"
/codon_start=1
/transl_table=11
/product="integration host factor beta chain"
/protein_id="YP_004158298.1"
/db_xref="GI:319898205"
/db_xref="GeneID:10137282"
/translation="MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVE
LRGFGAFSIKTRLARNGRNPRTGETVMVEEKWVPFFKTGKDLRDRLNT"
misc_feature complement(11906..12166)
/gene="ihfB"
/locus_tag="BARCL_0014"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(11906..11908,11927..11929,11933..11935,
11945..11950,12014..12016,12029..12034,12041..12055,
12065..12070,12077..12082,12089..12091,12134..12136,
12146..12148,12155..12157,12164..12166))
/gene="ihfB"
/locus_tag="BARCL_0014"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(11921..11923,11930..11932,11936..11938,
11948..11950,11978..11989,11996..11998,12002..12007,
12011..12013,12023..12025,12032..12037,12041..12043,
12047..12049,12092..12094,12161..12166))
/gene="ihfB"
/locus_tag="BARCL_0014"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 12383..13033
/locus_tag="BARCL_0015"
/db_xref="GeneID:10138240"
CDS 12383..13033
/locus_tag="BARCL_0015"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158299.1"
/db_xref="GI:319898206"
/db_xref="GeneID:10138240"
/translation="MTLHDQYELFSIESSFRNVLKKTYYHSYQVRLLRICLPIFALII
ALVFCWFTFFSIFVPFDNVLLRHEEEKIAQLTMLNPRLEGYTNFYKPYWIKAEKAFQD
RKSSGIIGLKNITAELPTGKQGQLFINAEEGAYDNINSRLQLDKPFTVTTKDGIIAQF
MTANINLSTNQLNTDQPVNIQSTGFHLMANALQVCEKEQVMYFQRGVHIILDQREK"
misc_feature 12458..13024
/locus_tag="BARCL_0015"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5375"
/db_xref="CDD:34939"
gene 13052..13699
/locus_tag="BARCL_0016"
/db_xref="GeneID:10137283"
CDS 13052..13699
/locus_tag="BARCL_0016"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158300.1"
/db_xref="GI:319898207"
/db_xref="GeneID:10137283"
/translation="MFIEGIRKFIREKKSIMKPKKSRKEWVSILVLSMAILGSVNGYA
RVTHFGIDGLNGKEPMEIHADSLEIRDKEGIAILNGNVSVMQSERLLRTSKLVIYYNK
AHVTNDINQLITKSVFSGKIGSTDIKKVEASGEVYIKMATQTVTGDKAIFDGQSNMII
LTGNNVVLTDGDNVATGCTLTANMKTGKASLEGCKTSGKKNRVSIILESSSKNGR"
misc_feature 13232..13615
/locus_tag="BARCL_0016"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:190815"
gene 13706..14500
/gene="yhbG"
/locus_tag="BARCL_0017"
/db_xref="GeneID:10137284"
CDS 13706..14500
/gene="yhbG"
/locus_tag="BARCL_0017"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
Product type t : transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004158301.1"
/db_xref="GI:319898208"
/db_xref="GeneID:10137284"
/translation="MFGIKKEKQTIEHNFTSEALKKTSNRILVAHNLIKAYRGRQVVN
HVSFNIRAGETVGILGPNGAGKTTCFYMVTGLIKSDGGLIEIDGFDITHLPMYRRARL
GIGYLPQEASIFRGLSVENNIKAVLEVIQKDRFKRCEELDALLHEFKIDHLRKIPALS
LSGGERRRLEIARALASRPNFILLDEPFAGIDPIAISDIKQLVRHLTQRGIGVLITDH
NVRETLELVDRAYIIHSGKVLVHGCPDVIINNADVRKIYLGNQFSL"
misc_feature 13784..14497
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:31332"
misc_feature 13787..14482
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="The ABC transporters belonging to the YhbG family
are similar to members of the Mj1267_LivG family, which is
involved in the transport of branched-chain amino acids.
The genes yhbG and yhbN are located in a single operon and
may function together in...; Region: ABC_YhbG; cd03218"
/db_xref="CDD:72977"
misc_feature 13883..13906
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72977"
misc_feature order(13892..13897,13901..13909,14030..14032,14258..14263,
14357..14359)
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72977"
misc_feature 14021..14032
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="Q-loop/lid; other site"
/db_xref="CDD:72977"
misc_feature 14186..14215
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72977"
misc_feature 14246..14263
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="Walker B; other site"
/db_xref="CDD:72977"
misc_feature 14270..14281
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="D-loop; other site"
/db_xref="CDD:72977"
misc_feature 14345..14365
/gene="yhbG"
/locus_tag="BARCL_0017"
/note="H-loop/switch region; other site"
/db_xref="CDD:72977"
gene complement(15136..15252)
/gene="prfC"
/locus_tag="BARCL_0018"
/pseudo
/db_xref="GeneID:10138699"
misc_feature complement(15136..15252)
/gene="prfC"
/locus_tag="BARCL_0018"
/inference="ab initio prediction:AMIGene:2.0"
/note="peptide chain release factor 3"
/pseudo
/db_xref="PSEUDO:CBI75699.1"
gene complement(15210..15335)
/locus_tag="BARCL_0019"
/pseudo
/db_xref="GeneID:10138421"
misc_feature complement(15210..15335)
/locus_tag="BARCL_0019"
/inference="ab initio prediction:AMIGene:2.0"
/note="hypothetical protein;Evidence 5 : No homology to
any previously reported sequences"
/pseudo
/db_xref="PSEUDO:CBI75700.1"
gene complement(15348..15491)
/gene="prfC"
/locus_tag="BARCL_0020"
/pseudo
/db_xref="GeneID:10137285"
misc_feature complement(15348..15491)
/gene="prfC"
/locus_tag="BARCL_0020"
/inference="ab initio prediction:AMIGene:2.0"
/note="peptide chain release factor 3"
/pseudo
/db_xref="PSEUDO:CBI75701.1"
gene complement(15628..15810)
/locus_tag="BARCL_0021"
/db_xref="GeneID:10138422"
CDS complement(15628..15810)
/locus_tag="BARCL_0021"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158302.1"
/db_xref="GI:319898209"
/db_xref="GeneID:10138422"
/translation="MFSLTRSRGNFTNGSDFHEIANLLAENQQALFIEGVEIVRSGLK
NLTFKLSMKIYDTRLF"
gene complement(15848..15943)
/gene="prfC"
/locus_tag="BARCL_0022"
/pseudo
/db_xref="GeneID:10137286"
misc_feature complement(15848..15943)
/gene="prfC"
/locus_tag="BARCL_0022"
/inference="ab initio prediction:AMIGene:2.0"
/note="peptide chain release factor 3"
/pseudo
/db_xref="PSEUDO:CBI75703.1"
gene complement(16184..16342)
/gene="prfC"
/locus_tag="BARCL_0023"
/pseudo
/db_xref="GeneID:10138423"
misc_feature complement(16184..16342)
/gene="prfC"
/locus_tag="BARCL_0023"
/inference="ab initio prediction:AMIGene:2.0"
/note="peptide chain release factor 3"
/pseudo
/db_xref="PSEUDO:CBI75704.1"
gene complement(16332..17996)
/gene="lysS"
/locus_tag="BARCL_0024"
/db_xref="GeneID:10138424"
CDS complement(16332..17996)
/gene="lysS"
/locus_tag="BARCL_0024"
/EC_number="6.1.1.6"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
PubMedId : 11121028, 9405621; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_004158303.1"
/db_xref="GI:319898210"
/db_xref="GeneID:10138424"
/translation="MHNQYDTYNLPPELIDSAAQSKAWPFEEARKIIKRYEKGYPERI
LFETGYGPSGLPHIGTFGEVVRTTMVRHAFHILTENKIKTKLLCFSDDMDGLRKVPDN
VPNRKKMEDYLGQPLSRIPDPFGDVYPSFGAANNVRLCAFLDRFGFDYEFASATDYYN
SGRFDETLLRILACYDKVMEIILPTLGEERRATYSLFLPISPISGKVLQVPMIARNVE
KGTVTYIEPETGNLIETEITGGKVKCQWKVDWAMRWTALEVDYEMAGKDLIDSTNLSS
KICKILGGKPPEGFNYELFLDDKGQKISKSKGNGLTIDEWLTYAPTESLGLYMFLKPK
TAKRLYFDVIPKTVDDYYTHLSAYERQQWKERLNNPVWHIHNGCPPQVNLPVSFAMLL
NLVSASNAENKEVLWGFISRYAKGANAETYPILDQLVEFALKYFDIFVKPNKKFRMPD
ENECSILIQIDTKLASLPKTVDGDTLQNALLDIARLTERYQDHSKKSPEGGPGVSNVF
FQMLYEVLLGQERGPRLGSFIALYGIDETRALIAAALARSLEDNGT"
misc_feature complement(16386..17945)
/gene="lysS"
/locus_tag="BARCL_0024"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysK;
PRK00750"
/db_xref="CDD:179109"
misc_feature complement(16872..17933)
/gene="lysS"
/locus_tag="BARCL_0024"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature complement(order(17076..17087,17817..17828))
/gene="lysS"
/locus_tag="BARCL_0024"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(17082..17084,17817..17819,17826..17828))
/gene="lysS"
/locus_tag="BARCL_0024"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(17817..17828)
/gene="lysS"
/locus_tag="BARCL_0024"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(17076..17087)
/gene="lysS"
/locus_tag="BARCL_0024"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene complement(18380..19603)
/gene="argG"
/locus_tag="BARCL_0025"
/db_xref="GeneID:10138290"
CDS complement(18380..19603)
/gene="argG"
/locus_tag="BARCL_0025"
/EC_number="6.3.4.5"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 11844799, 12684518; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="argininosuccinate synthase"
/protein_id="YP_004158304.1"
/db_xref="GI:319898211"
/db_xref="GeneID:10138290"
/translation="MKKWKDIKKVVLAYSGGLDTSIILKWLQNELEAEVVTFTADLGQ
GEELEPARRKAEMLGVKKIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLI
SKRLVEIAKETNADAIAHGATGKGNDQVRFELSAYALNPDIKIIAPWRDWNFKSRTDL
IEFAHAHQIPVEKDKQGEAPFSVDANLLHSSSEGKILEDPAISAPEYVHMRTLSPEAA
PDQATIITIGFKKGDAISINGAVLSPADLLAQLNSYGRENGIGRLDLVENRFVGMKSR
GIYETPGGTILLTAHRAMESLTLDRGAAHLKDELMPRYAELIYYGFWFSPERKMLQAA
IDLSQENVEGEVTLKLYKGNVIVEGRQSEKSLYSDKLVTFENDQGTYDQKDAAGFIKL
NALRLRTLAARSSKL"
misc_feature complement(18425..19594)
/gene="argG"
/locus_tag="BARCL_0025"
/note="Argininosuccinate synthase [Amino acid transport
and metabolism]; Region: ArgG; COG0137"
/db_xref="CDD:30486"
misc_feature complement(18425..19576)
/gene="argG"
/locus_tag="BARCL_0025"
/note="Argininosuccinate synthase. The Argininosuccinate
synthase is a urea cycle enzyme that catalyzes the
penultimate step in arginine biosynthesis: the
ATP-dependent ligation of citrulline to aspartate to form
argininosuccinate, AMP and pyrophosphate . In...; Region:
Argininosuccinate_Synthase; cd01999"
/db_xref="CDD:30186"
misc_feature complement(order(19055..19060,19208..19210,19241..19243,
19307..19309,19472..19474,19484..19486,19490..19492,
19544..19546,19565..19567))
/gene="argG"
/locus_tag="BARCL_0025"
/note="ANP binding site [chemical binding]; other site"
/db_xref="CDD:30186"
misc_feature complement(order(18647..18649,18767..18769,18803..18805,
19025..19027,19031..19033,19052..19060,19211..19213,
19223..19225,19316..19321,19331..19333))
/gene="argG"
/locus_tag="BARCL_0025"
/note="Substrate Binding Site II [chemical binding]; other
site"
/db_xref="CDD:30186"
misc_feature complement(order(19220..19228,19235..19240))
/gene="argG"
/locus_tag="BARCL_0025"
/note="Substrate Binding Site I [chemical binding]; other
site"
/db_xref="CDD:30186"
gene 19615..19755
/locus_tag="BARCL_0026"
/db_xref="GeneID:10137983"
CDS 19615..19755
/locus_tag="BARCL_0026"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 6 : Doubtful CDS"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158305.1"
/db_xref="GI:319898212"
/db_xref="GeneID:10137983"
/translation="MLYILFIFYSEIKTMQEMKIISLNQRKKDAKKMKKCKKKLCKRY
KS"
gene 19787..20425
/locus_tag="BARCL_0027"
/db_xref="GeneID:10137287"
CDS 19787..20425
/locus_tag="BARCL_0027"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pt : transporter"
/codon_start=1
/transl_table=11
/product="amino acid efflux protein"
/protein_id="YP_004158306.1"
/db_xref="GI:319898213"
/db_xref="GeneID:10137287"
/translation="MSFLPEWSIVVQFFLAALVFALIPGPDVMLSVGRTIAQGKKAGI
MCAFGSATGFTIQVIAVAIGLSALIFTSPHAFFLLKIVGAFYLLWLAFQLLRQHSTFS
LKETSPERHSLKRNYLTGIGINLLNPKVILFNVTFLPQFINANDPMATQKLLILGLSY
IPISLPITISMVFMANKLSKSFLQNPFYARFFDWFIAGVFTSFALRLLILKN"
misc_feature 19802..20422
/locus_tag="BARCL_0027"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene complement(20422..21657)
/locus_tag="BARCL_0028"
/db_xref="GeneID:10137288"
CDS complement(20422..21657)
/locus_tag="BARCL_0028"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="Fe-S protein"
/protein_id="YP_004158307.1"
/db_xref="GI:319898214"
/db_xref="GeneID:10137288"
/translation="MAISYDLRSVGTDPILNAENTIVTKQSKLSLIGLSRDEMTQALQ
VIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMFKDHFSIARPKIVAEQI
SQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGCTLTCSFCHTGTQKL
VRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVMMGMGEPLYNFEA
VKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHAVHDKLRNIL
VPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQLLKGIPAK
INLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQLKSASE
RLRKSERMELENMTDNEYA"
misc_feature complement(20470..21576)
/locus_tag="BARCL_0028"
/note="Predicted Fe-S-cluster redox enzyme [General
function prediction only]; Region: COG0820"
/db_xref="CDD:31162"
misc_feature complement(20596..21225)
/locus_tag="BARCL_0028"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(20638..20643,20731..20733,20866..20868,
20926..20934,21025..21030,21037..21039,21196..21204,
21208..21210,21214..21216,21220..21222))
/locus_tag="BARCL_0028"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(21698..22201)
/locus_tag="BARCL_0029"
/db_xref="GeneID:10137289"
CDS complement(21698..22201)
/locus_tag="BARCL_0029"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158308.1"
/db_xref="GI:319898215"
/db_xref="GeneID:10137289"
/translation="MFKKIFILVCVMIMTVVSPAWTQTPNRLQQFEAWGAYSYKSPEN
TICYILSVPLKALPTTVKHGDNFFLVTKRSNSPVLFEPQFMAGYKLKEGSKVTVTIGD
KDFDFFTKDSSAWLTSSGMEKQLVAAMRSGANMTVKATSKRGTHTTYTYSLKGVTAAL
NMVQKCN"
misc_feature complement(21719..>21844)
/locus_tag="BARCL_0029"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; cl02207"
/db_xref="CDD:154799"
gene complement(23011..23190)
/locus_tag="BARCL_0030"
/db_xref="GeneID:10137290"
CDS complement(23011..23190)
/locus_tag="BARCL_0030"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158309.1"
/db_xref="GI:319898216"
/db_xref="GeneID:10137290"
/translation="MFLLLIPKHAGSDHLKTLSKIAHALRYPDVIEKLCRTHDANTAL
YYIDLYYIDSTSHAV"
misc_feature complement(23050..>23190)
/locus_tag="BARCL_0030"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cl00163"
/db_xref="CDD:206872"
gene complement(23175..23453)
/locus_tag="BARCL_0031"
/db_xref="GeneID:10137291"
CDS complement(23175..23453)
/locus_tag="BARCL_0031"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158310.1"
/db_xref="GI:319898217"
/db_xref="GeneID:10137291"
/translation="MRRMQSPLKTNSKKILQILAEKTAKLINLDKQLVFNVILQCEKL
VTSVRNGIAISHRKFSNIEHIIGVVLTLKILLILKLLMTNLLILCFFF"
misc_feature complement(<23271..23423)
/locus_tag="BARCL_0031"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cl00163"
/db_xref="CDD:206872"
gene complement(23574..23708)
/locus_tag="BARCL_0032"
/db_xref="GeneID:10137292"
CDS complement(23574..23708)
/locus_tag="BARCL_0032"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 6 : Doubtful CDS"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158311.1"
/db_xref="GI:319898218"
/db_xref="GeneID:10137292"
/translation="MLIIRIEKLINAWIITVVTSVIMMGNALLVFRILLITDLNIIDF
"
gene complement(24143..24466)
/gene="trxA"
/locus_tag="BARCL_0033"
/db_xref="GeneID:10137293"
CDS complement(24143..24466)
/gene="trxA"
/locus_tag="BARCL_0033"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type c : carrier"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_004158312.1"
/db_xref="GI:319898219"
/db_xref="GeneID:10137293"
/translation="MTCIKIDSSNFESEVLTSSLPVVVDFWAEWCGPCKSIAPILDEI
ATEMQNQIKVAKINIDENPELATRYGIRSIPTLLMFKNGEVSSNKVGASSKGHLVEWV
KNNLG"
misc_feature complement(24158..24442)
/gene="trxA"
/locus_tag="BARCL_0033"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature complement(order(24365..24367,24374..24376))
/gene="trxA"
/locus_tag="BARCL_0033"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene complement(24565..28023)
/locus_tag="BARCL_0034"
/db_xref="GeneID:10138634"
CDS complement(24565..28023)
/locus_tag="BARCL_0034"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="ATP-dependent nuclease subunit A"
/protein_id="YP_004158313.1"
/db_xref="GI:319898220"
/db_xref="GeneID:10138634"
/translation="MTIFSIPQTALNTQAKATDPIKNVWVSANAGSGKTHVLTERVIR
LLLNGTPPARILCLTYTNAAASVMQSRIFRTLSSWNQFDDKQLQKILSNLENKPANAK
KLANARQLFARALETPGGLKIQTFHAFCESLLHQFPLEANIAGHFELLDDINRKKLLK
QARSKLLTHRDAQLALKELFKVINENTLNQLLYEATQKQHELSDFLPLILSENGKEQL
RTFFNLAPNETNQKLLDKIQQTATLPSYAIKHYQTYSTPKNKDIIEKFLQLATASDET
NIINLVSNIYFVKAGKPRDFSRLFSKKSDEIWPFIEKEIEDKQNQLSILLEKYQCLKL
ITLNIAAFQLCYIYLKIYADLKKVNNVLDFDDLIERTLHLLQHKGASQWVQYKLDRGI
DHILLDEAQDTNPKQWQIIQLLAQEFFAGHSQRTNIRTVFAVGDEKQSIYSFQGAVPE
NFAENGRMIQKKVQQVEQKFEKIQLNYSFRSTADILKSVDLVFETPENYKGLSAEHVK
TVHEPIRVHSPGDVIIWDTISQKTNELPDDWLSTVDHLDTPQIRLAEKIAETIANWLK
NGEMLPAKKRLLRASDIMVLVRKRDQFVSALSRALKLRHVPVAGADRLQLTAHISVLD
LMALARFVLQPQDDLSLACVLKSPLFSLSENELYQLAAQRKGSLWESLCTHTSSHASF
KTIFDRLNTYRALVDKMPVFEFYSYILNNDKGRQKILARLGTEANEVLDAFMDHTLTI
QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAI
WHPKYAPHFLKFFLGDKQTFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTR
AEDRLIICGYSNQKETPNTWLQLVKKALKPHAVSIKGPAEDIAAWRYCITSSCSTPMY
QEIPCDAHHVFPPLPAFFHDKMPTESTLSKPLRPSVAGIIDAKTEFFPNKKHFSLSPV
LEEKNTKRTFSIEYGNFIHKLLQHLPNYTPTKRQDYAQFYLNTKASHWHKTQRENALH
HIWKILDNPKLKPLFSRFSHAEVALMGIVKINGKEQIISGQIDRLCITDNSVFFADFK
TGLPPENDTDIAQRHLLQMALYQKLLQAIYPNKNMQALLIYIKKAKIFKLLPEKLDAL
LDEMIL"
misc_feature complement(24610..27984)
/locus_tag="BARCL_0034"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature complement(27802..27948)
/locus_tag="BARCL_0034"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(24622..25107)
/locus_tag="BARCL_0034"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene complement(28020..31142)
/locus_tag="BARCL_0035"
/db_xref="GeneID:10137294"
CDS complement(28020..31142)
/locus_tag="BARCL_0035"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158314.1"
/db_xref="GI:319898221"
/db_xref="GeneID:10137294"
/translation="MTRKPRVFSISPGTPFLPYFVDALLSGTLIDNFASNGNIQTALA
DTLIYVPTRRAARALRTAFFEKSHTQSSFLPTICPLGDINEERCLFIENNTNTLINTP
PIGEIERLLLLARLIRLWRENLPTHLRSMFDTEDVFIPATTADAIWFAQDLARLMDEV
ETESVDWSKLKEIVPDMVAEWWQITLDFLTIVTQSWPQILKERQQCNPVEWLNQTFKM
HADILHRTQPNKPIIAAGVTSSIPTIANLLKVIAYLPKGAVIFPGLDVQMDETQWNAL
GALNKEKIIFDPSHHTAVFSHPQYHLKKLLSLMKCQRIHVREIGQQSAIKIRRAALLS
EALRPASTTDLWAQIVRDDYEDICADWSLIEAPNEREEALAISIALRNAIEDPKKNAA
LITNDRNLARRVAAELQRFGIEANDSGEIPLAQTLPSTLLRLLLENIFKPGDPIAFLS
LLKHPLTTLEYNRNYLREMTENFELLVLRGNASPINLCECDQFFKTWMKTHFHKISNN
CALDLQKTEEAGFLCHLLVKAVEPLVFLIKQDRECTINEAAIATVKVFENFGRDADNS
LRHLYQNEAGTALATFLRELVSDQSGLKFRLHEWPALFSALIATRSVSPSPGGHPRLF
IWGTLESRLQTVNTVVIGSLNEGSWPIKTHNDAFLSRPMKMTLNLEPPEHRIGLSAHD
FQWAMGMDQVIMSRATRINHTPSVPSRWLQRLETVVGKQVWKQIRTRGEILLHWAKML
DNTNSIVPAERPCPVPPLDIRPRHFSVTEIETLRHDPYAIYAKKILRLKPLKALIHDP
CSTERGTLYHAILAAFCTQIKNQNATDMLDILMTIGRKEFDKLNLPPDIEAVWWLNFE
NFAPFLIQWEQSLGSRERYAEVIAQHTLIGETGVTLSGRADRIDILPNKTIEIIDFKT
SIPPSSTQVINLFSPQLALEAALLMQGAFIDFKGLTPSNLLYIPLKRKGEIKPIAIIN
KKTKDQQNVISLGKKAWKHLISLMNYYQNPQQGYLSNAIPLKKSYEGDYDHLARLLEW
SIGFNKTDQS"
misc_feature complement(28050..31127)
/locus_tag="BARCL_0035"
/note="double-strand break repair protein AddB,
alphaproteobacterial type; Region: addB_alphas; TIGR02786"
/db_xref="CDD:163020"
misc_feature complement(28044..28850)
/locus_tag="BARCL_0035"
/note="RecB family exonuclease [DNA replication,
recombination, and repair]; Region: COG2887"
/db_xref="CDD:32713"
gene complement(31340..32860)
/locus_tag="BARCL_0036"
/db_xref="GeneID:10137295"
CDS complement(31340..32860)
/locus_tag="BARCL_0036"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="ATPase/phosphotransferase"
/protein_id="YP_004158315.1"
/db_xref="GI:319898222"
/db_xref="GeneID:10137295"
/translation="MNFSFFLESEEATILFAQDLALALKPGDLVTFQGDLGAGKTTLI
RALIRTLANNFTMDIPSPTFNLVQSYQLPQFEVLHADFYRLSSIEEIDELGLHESRKE
NVLLIEWPEKGAEILGPVTFAITLKHKDCGRYITLTSAVHANERLQRSFAIRAFLTTH
GRSHIQRRFLADDASARSYELLDSGNHQEVLMNAPSMQMAQDVDSSYANITHLAKDIS
QFVGISQLILDNGFSAPHIFAKDLKNGILILENLGCEGLLDQSGNPIEERYIACSELL
ATFHQKSWPLEKQFATFRLQIPFYDCQAMQAELSLLLDWYLPFQKKKTLNKEQREAFF
TCWQPYLDLLIQGENTFVMRDYHSPNILWRKHKKDIDRIGLIDFQDGVSGPTVYDLVS
LAQDARLFISSELEDKILNTYCSARHQALRPFDEDEFRKLYVLAGTQRVSKTLGIFVR
LHQRDGKSSYLKHLPHLQNYLIRNLSHPILAPLQSLYQEIGFLSESEALNRDILNA"
misc_feature complement(32408..32848)
/locus_tag="BARCL_0036"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
misc_feature complement(31361..32398)
/locus_tag="BARCL_0036"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(31589..32359)
/locus_tag="BARCL_0036"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
gene complement(32915..35392)
/locus_tag="BARCL_0037"
/db_xref="GeneID:10137296"
CDS complement(32915..35392)
/locus_tag="BARCL_0037"
/EC_number="2.7.13.3"
/function="16.12 : Sense"
/function="16.3 : Control"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_004158316.1"
/db_xref="GI:319898223"
/db_xref="GeneID:10137296"
/translation="MQKKKPSVHNFIFIFKEKTQKIAQLCVDVFYFLFFLFPVYAFAQ
TSVFHLLPSFTWSDESRLIIVLFGSISCSSLFICIIVIINTKRALWKSWKMIQANLSE
KLKNYEWLLEETGQCLFIWDNPTALPRIVGNIPALQKAGIHQKDFQCFEKWLEKNSLQ
QFDQALTQLRCNGCSFELSVTTTSKIMLQITGIIAGTAAIVRFQDISAQQSENIRLQK
DAIQILTELKMQRNLLDHIREPVWIRDCEGKICFTNRAFREMTNFQENNNIVDLFNET
TLCTTDETEAIFQKHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMGRI
LQSHCETLDQISTAVAIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLFLEHLREK
GFIGEHPDWRVWKEELLKVYRLTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLT
EKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLLVEGT
HITQLQNHCSALTTGEEWKQFTQFITGFAEKRDAYSGRIDLKSGIIIDYTLAPLPNGQ
TMLTFVNVTDTVHIARALQEKNEALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILR
DQIFGSINERQQEYLGYIHSESGVLLNIVNDILDLATLDAGIMILDIKPVHIAEAMTQ
AVARVEERLHGRQITLSQHISPSLKFISADVKRLHQIFVNVLSNAINFATEKSTIEFR
ADTQGDHIIFSVHNEGSDIPTDILDRIFKRFSSHSHHGGRAGAGLGLSLVKSFVELHD
GRVEIFTGMGQGTTVKCFFPNKEIGVL"
misc_feature complement(<34574..34708)
/locus_tag="BARCL_0037"
/note="PAS domain; Region: PAS; smart00091"
/db_xref="CDD:197512"
misc_feature complement(34022..34369)
/locus_tag="BARCL_0037"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature complement(32942..33976)
/locus_tag="BARCL_0037"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(33413..33610)
/locus_tag="BARCL_0037"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(33425..33427,33437..33439,33446..33448,
33458..33460,33467..33469,33479..33481,33536..33538,
33545..33547,33557..33559,33566..33568,33578..33580,
33590..33592))
/locus_tag="BARCL_0037"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(33572..33574)
/locus_tag="BARCL_0037"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(32942..33247)
/locus_tag="BARCL_0037"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(32954..32956,32960..32965,32978..32980,
32984..32986,33032..33043,33116..33121,33125..33127,
33131..33133,33137..33139,33206..33208,33215..33217,
33227..33229))
/locus_tag="BARCL_0037"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(33215..33217)
/locus_tag="BARCL_0037"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(33035..33037,33041..33043,33119..33121,
33125..33127))
/locus_tag="BARCL_0037"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(35405..36784)
/gene="ahcY"
/locus_tag="BARCL_0038"
/db_xref="GeneID:10137297"
CDS complement(35405..36784)
/gene="ahcY"
/locus_tag="BARCL_0038"
/EC_number="3.3.1.1"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 1631127, 8282711; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="adenosylhomocysteinase"
/protein_id="YP_004158317.1"
/db_xref="GI:319898224"
/db_xref="GeneID:10137297"
/translation="MAAQDYVIKDIALATYSGKVDIAEMEMPGLMACHKEFFSSQPLR
GACISSLLHMTIQIGVLIEILKAIDADIRWSSNNIFSTQNHAAAAGTTVFIFKGETFE
EYWIYIDAIFQWPDDKLSNLILDDGNDATNYVLIASCVKENKDILSHPTTEEEEFFFK
QIQKRITIPGFFTRQRTAIKGVSKETITEVHHLDQLQKKGLLFFPAINVNDSVTKSKF
DNKYGCKKSLVDIIRHGTDLMIAGKIAIFCGYDNVGKGSAASLSDAGARVKITEIDPI
CPFQAAMNGYEAVTLEDAASSADTIITTTGNKNIVRLEHMRQIKNICILGNIGHFDNK
IHVSAPRNLTGTNIKSKVDMITFPEGKHVILLSEGRLLNLGNSTVHPSFIMSASFTDK
VLAQIELFTNAENYKNEVMFLPKYLDEKVAGLHFDRLGIKLSVLSEEKAAYIGISPKE
PYKSDHYRY"
misc_feature complement(35408..36781)
/gene="ahcY"
/locus_tag="BARCL_0038"
/note="Adenosylhomocysteinase; Provisional; Region:
PTZ00075"
/db_xref="CDD:185430"
misc_feature complement(35411..36766)
/gene="ahcY"
/locus_tag="BARCL_0038"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(order(35453..35458,35465..35470,35477..35479,
35483..35491,35495..35500,35507..35509,35549..35551,
35633..35635,35651..35653,35744..35746,35786..35788,
35819..35827,35858..35869,35918..35923,35930..35941,
35945..35971,35990..35995,36056..36070,36074..36076,
36083..36088,36107..36112,36119..36121,36131..36133,
36146..36148,36152..36154,36200..36205,36212..36214,
36707..36712))
/gene="ahcY"
/locus_tag="BARCL_0038"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature complement(order(35645..35647,36128..36130,36140..36142,
36227..36232,36407..36409,36614..36616,36620..36622,
36626..36628))
/gene="ahcY"
/locus_tag="BARCL_0038"
/note="active site"
/db_xref="CDD:29522"
misc_feature complement(order(35645..35647,35666..35668,35672..35674,
35795..35803,35855..35857,35870..35875,35966..35974,
36026..36034,36038..36040,36125..36127,36221..36229))
/gene="ahcY"
/locus_tag="BARCL_0038"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene complement(37119..38117)
/locus_tag="BARCL_0039"
/db_xref="GeneID:10137969"
CDS complement(37119..38117)
/locus_tag="BARCL_0039"
/EC_number="1.6.99.3"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone oxidoreductase"
/protein_id="YP_004158318.1"
/db_xref="GI:319898225"
/db_xref="GeneID:10137969"
/translation="MKLDYALYQNPKLITVFGGSGFVGRYIVETLTKRGYRVRIAVRC
PQKAYYMLQIGEVGQTQMLKTDVRNYASVANALSGADGAVFLPGGLAQTNKPNFQNIQ
VDGARNVSELTIKAGIPLIYMSTLITDKNASFSYARAKALSEQIVRNTHPQAIIMRSS
VIFGPEDCFFNVLANFSRFMPIMPLFGGGQSKLQPVYVGDIAKFVVHALEGHVILGKS
YDLGGPKIFTFQNALEEILKVIHRKKRTVPLPLAAGLFIGGFFGTLGKFPLFPTLITA
NQIRFLQRDNIVSQEARDNGYTLEGVGIIPKSMTAILPSYLWRFRPQGQFSHNLSI"
misc_feature complement(37260..38084)
/locus_tag="BARCL_0039"
/note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
Region: NDUFA9_like_SDR_a; cd05271"
/db_xref="CDD:187579"
misc_feature complement(37485..38078)
/locus_tag="BARCL_0039"
/note="NADH(P)-binding; Region: NAD_binding_10; pfam13460"
/db_xref="CDD:205638"
misc_feature complement(order(37632..37643,37698..37700,37710..37712,
37743..37751,37815..37817,37854..37862,37986..37994,
38049..38060,38064..38066))
/locus_tag="BARCL_0039"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187579"
misc_feature complement(order(37698..37700,37710..37712))
/locus_tag="BARCL_0039"
/note="active site"
/db_xref="CDD:187579"
gene complement(38160..39464)
/gene="folC"
/locus_tag="BARCL_0040"
/db_xref="GeneID:10137298"
CDS complement(38160..39464)
/gene="folC"
/locus_tag="BARCL_0040"
/EC_number="6.3.2.12"
/EC_number="6.3.2.17"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2b : Function of strongly homologous gene;
PubMedId : 3040739, 7798151; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="dihydrofolate synthase/folylpolyglutamate
synthase"
/protein_id="YP_004158319.1"
/db_xref="GI:319898226"
/db_xref="GeneID:10137298"
/translation="MQQVVDDLIKIYPKKCDLSLDRISRLLECLGNPHLNLSPIIHIA
GTNGKGSASAICRALLESAGYRVHVYSSPHLVNWNERFRLSHKGGSQFVTDSLLIKTI
HQIIEVNCKKPITVFEVFTAAAFMLFSTHPADAIILEVGLGGRFDATNVIKKPAVSLI
MPIDYDHESFLGNTIAQIAFQKGGIIKSEVPVIIGKQDHDIISPLLSTLATKKKAPYY
IFNQDYKSYKEYGRMVFQNNQGLLDLPLPKLIGDHQIANAGAAIEAVYKAGFRLSEQV
ISNALQNLYWPARMQHLTYGQLVDQLSPNFDLWLDGGHNPAAGKVIAEVLTQWKKRSN
RPIVMIVGMLNTKDSIGYFCPLVNLVKIVYTVPLVSSNAGVCPKILAESAQKAGLIAD
PQANLQAAFHKISLEHKEAIVLISGSFYLAGDILRDNQTPPC"
misc_feature complement(38166..39464)
/gene="folC"
/locus_tag="BARCL_0040"
/note="Folylpolyglutamate synthase [Coenzyme metabolism];
Region: FolC; COG0285"
/db_xref="CDD:30633"
gene complement(39498..40403)
/gene="accD"
/locus_tag="BARCL_0041"
/db_xref="GeneID:10138145"
CDS complement(39498..40403)
/gene="accD"
/locus_tag="BARCL_0041"
/EC_number="6.4.1.2"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 1355086, 1886618, 3040734, 3040739, 767824, 92380957,
1355089, 7678242; Product type e : enzyme"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase carboxyl transferase
subunit beta"
/protein_id="YP_004158320.1"
/db_xref="GI:319898227"
/db_xref="GeneID:10138145"
/translation="MNWITNYVRPKINSILGNREIPDNLWIKDPTNGQMVFHKDLKAN
QYVIPNSGHHMPISAKNRLMHFFDDGVYTLIENPKVVIDPLKFRDEKRYIDRLKDYRS
KLGVDDNILNARGTIEGLPIIATVQDFAFMGGSLGMASGEAIIKAFHTAITEKCPLVL
FAASGGARMQEGTLSLMQMPRTTVAIEMMKEEKLPYVVVLTNPTTGGVTASYAMLGDI
HIAEPGAMIGFAGPRVIQQTIRETLPEGFQSSEYLFEHGMIDMVVSRLQMKTTIARLL
RLMTKSPATLKPSNPSSTKPVNSNF"
misc_feature complement(39534..40403)
/gene="accD"
/locus_tag="BARCL_0041"
/note="acetyl-CoA carboxylase subunit beta; Validated;
Region: PRK05654"
/db_xref="CDD:180184"
misc_feature complement(<39693..40085)
/gene="accD"
/locus_tag="BARCL_0041"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene complement(40928..41641)
/locus_tag="BARCL_0042"
/db_xref="GeneID:10137957"
CDS complement(40928..41641)
/locus_tag="BARCL_0042"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158321.1"
/db_xref="GI:319898228"
/db_xref="GeneID:10137957"
/translation="MIFTAAHYALQRLFTQQYRTMIWKILGLTFLVLVIIWLCTYQFF
MPYFSLWIAHFIPRPTYWTEWIELSILIIFNLGLSFLIAFFIAPIAAMIGSFFIDNAA
EIIEKEDYPNEPTGKAMSFGYSFILALKFVILSFFGNGIAFFLFFIPSINLIAFYVIN
GYLFGREYFVFVAYRFRSKQEAHAFLRTHHTTVFGAGLLIAFFVSIPILNLFTPLFAA
AFMTHLQKMLSHQTSHLSH"
misc_feature complement(40931..41638)
/locus_tag="BARCL_0042"
/note="CysZ-like protein; Reviewed; Region: PRK12768"
/db_xref="CDD:171714"
gene complement(41772..43184)
/gene="dfp"
/locus_tag="BARCL_0043"
/db_xref="GeneID:10137299"
CDS complement(41772..43184)
/gene="dfp"
/locus_tag="BARCL_0043"
/EC_number="6.3.2.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="panthotenate metabolism flavoprotein"
/protein_id="YP_004158322.1"
/db_xref="GI:319898229"
/db_xref="GeneID:10137299"
/translation="MYDVMTNITLRNVSLEIQEFLRIRAEQNGISIEEETLHLLNNLV
ETSIISPLQTSTIEKQSLKSKSILLIIGGSIAAYKALDLIRRLQEREANLNIVMTTAA
QKFITPLAAEVLSGSSVYSDLFSGEKEQDVSHIRLARQADLIIVAPATANRIAKIATG
IADDLANCIILAARCPLLIAPAMNPAMWTHPTTIRNIAKLRANGVHMVGPEVGEMAER
NEKGCGRMSEPLTIVASAEALLSAQKKSLCGRHFIVTSGPTHEPIDPVRYLANRSSGK
QGHAIATALANLGATVTLICGPVGLADPEGVKTIHVETACQMLKAVQEALPADGAIFV
AAVCDWRSQTQHLQKIKKESNQTPLSLHMIENPDILATIGHAPNRPPLVIGFAAETCD
IIANAQKKCVKKGADFILANDVSLHADNTNIMGSDTNEIFFVSKDNIEHWPHMSKQKV
AEKLANAVVSFFSFLSPVCE"
misc_feature complement(41796..43172)
/gene="dfp"
/locus_tag="BARCL_0043"
/note="bifunctional SbtC-like/phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Provisional;
Region: PRK13982"
/db_xref="CDD:172484"
misc_feature complement(42606..42959)
/gene="dfp"
/locus_tag="BARCL_0043"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature complement(41883..42446)
/gene="dfp"
/locus_tag="BARCL_0043"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene complement(43255..44841)
/gene="aarF"
/locus_tag="BARCL_0044"
/db_xref="GeneID:10138068"
CDS complement(43255..44841)
/gene="aarF"
/locus_tag="BARCL_0044"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ubiquinone biosynthesis protein"
/protein_id="YP_004158323.1"
/db_xref="GI:319898230"
/db_xref="GeneID:10138068"
/translation="MVQISTYLQLLRALFIFTREGVISAIPSDGLQGFPAVYHRIAST
LARRKTQKKHRSENISHAINKLGPSYVKLGQFLATRPDIVGRDIAADLAQLQDRVQTF
PCADAIVQIENSLGQSINDLFTDFHPPIAAASIAQVHPAEYYDKAGHKKKCAVKVIRP
NIRNRFAKDLKGFYLIAHLQERYIPASRRLRPVRVVDTLAQTTQIEMDLRLEAAAISE
MAENTQHDAGFRVPEIDWERTGRNVLTMEWIDGIKMSDIPALKKAGFDLKALAVTLIQ
SFLRHTLRDGFFHADMHPGNLFVDPQGCIVAVDLGITGRLGKKEKHFLAEILYGFITR
DYHRVAYAHFEAGYVPLHHNIESFAQANRAIGEPIHGQSAQSISMARLLTLLFEVTEL
FDMKTRPELLLLQKTMVVVEGVARSLDQDFNMWKASEPIVKEWISKNLGPVGLVKDLS
EGTQALLSLARQTPQLIQNFQRIEEGLSKMTKTGLYLSPATLKQLAFEQSRTNRYNRY
SLFIIAFCLLFVTFFLFPSF"
misc_feature complement(43417..44841)
/gene="aarF"
/locus_tag="BARCL_0044"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
misc_feature complement(43504..44823)
/gene="aarF"
/locus_tag="BARCL_0044"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature complement(order(43915..43920,43948..43950,43954..43956,
44083..44085,44095..44106,44146..44148))
/gene="aarF"
/locus_tag="BARCL_0044"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88273"
gene complement(44845..45627)
/gene="ubiE"
/locus_tag="BARCL_0045"
/db_xref="GeneID:10137952"
CDS complement(44845..45627)
/gene="ubiE"
/locus_tag="BARCL_0045"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis"
/protein_id="YP_004158324.1"
/db_xref="GI:319898231"
/db_xref="GeneID:10137952"
/translation="MAAETERVGIEGGMEHSFGFTKVDEMQKQSMVDNVFHSVAENYD
KMNDILSLGLHRIWKNSMVAWLYPPAISNWKVLDVAGGTGDIAFRILNASHRKAHVTI
LDINSSMLSVGKKRAQKNNLASLIDFIEANAEHLPFKDQSFNAYTIAFGIRNIPHIDK
ALREAFRVLKPGGRFLCLEFSNVEMPLLDKIYDLWSFNAIPKLGQFITGNHDAYRYLV
ESIRKFPKQNDFAHMIRNAGFSSVSYRNLTGAIATLHSGWKI"
misc_feature complement(44848..45570)
/gene="ubiE"
/locus_tag="BARCL_0045"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:32408"
misc_feature complement(45097..45405)
/gene="ubiE"
/locus_tag="BARCL_0045"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(45184..45186,45229..45237,45313..45318,
45373..45393))
/gene="ubiE"
/locus_tag="BARCL_0045"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(45749..48178)
/gene="gyrB"
/locus_tag="BARCL_0046"
/db_xref="GeneID:10138643"
CDS complement(45749..48178)
/gene="gyrB"
/locus_tag="BARCL_0046"
/EC_number="5.99.1.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_004158325.1"
/db_xref="GI:319898232"
/db_xref="GeneID:10138643"
/translation="MSDETISPMCGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGL
HHMVYEVVDNAIDEALAGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVI
MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADS
ALKIVGDCDSESGTEITFLPSSETFTMVEFNFETLERRLRELAFLNSGIHILLTDQRR
ADVQSVELHYKGGLVEFVKHIDQSKRALIDNPIYIANEKDGISVDVALWWNDSYHEKV
LCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILS
VKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKIFISKVVEAAAAR
EAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQN
QAILPLRGKILNVERARFDRMLSSEMIGTLITALGTSIGKDEFSPDKVRYHKIIIMTD
ADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVSRGKSFQYIKNEAAFEEFL
IDAGSEETTLELSTGEVFAGTDLRKLAEDARMLRQLLNGLHTRYNRNIVEQAAIAGIF
SSEAFTTPEKAQKTADNVANRLNLIADDMERGWSGIFTPEGGLCFERILRGVKEVIIL
DAGLINSADARQIDRIAQNLIEVYSPPPLLHHKDKSERIFGPIGLLESIFKNGKKGLT
LQRYKGLGEMNADQLWETTLDPDARTLLQVKINDATDADSLFSRLMGDEVEPRRAFIQ
DNALSVANLDI"
misc_feature complement(45752..48160)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature complement(<47903..48049)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(48017..48019)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(47924..47926,47930..47932))
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(47021..47491)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature complement(47336..47338)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature complement(order(47144..47146,47150..47155,47162..47164))
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature complement(order(47138..47140,47144..47146))
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature complement(46553..46897)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="Topoisomerase-primase domain. This is a nucleotidyl
transferase/hydrolase domain found in type IA, type IIA
and type IIB topoisomerases, bacterial DnaG-type primases,
small primase-like proteins from bacteria and archaea, OLD
family nucleases from...; Region: TOPRIM; cl00718"
/db_xref="CDD:207177"
misc_feature complement(order(46643..46645,46649..46651,46655..46657,
46865..46867,46874..46879))
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="active site"
/db_xref="CDD:173773"
misc_feature complement(order(46655..46657,46877..46879))
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173773"
misc_feature complement(45785..45976)
/gene="gyrB"
/locus_tag="BARCL_0046"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 48886..49749
/locus_tag="BARCL_0047"
/db_xref="GeneID:10138210"
CDS 48886..49749
/locus_tag="BARCL_0047"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic amino acid-binding
protein"
/protein_id="YP_004158326.1"
/db_xref="GI:319898233"
/db_xref="GeneID:10138210"
/translation="MNKFIDMLNYFIGIFFMASVLFFPPFVKAGMGGRLPFFLNAYEH
LIQPDITDIARLRFVTTFDFPPFNFLDKTGHLSGYNADLLRAICVKLKLEKLCEVEII
PREELVNHLNSDGAEAIIAGLEETTEMRQYLSFTQTYLRFPARFVSYKSLNLNEPISD
KLEHLKSGFLIKSAYEKLFHSYFSKAKWQGFSDRKMLYKALQNHEIDLIFDDGLALSL
WINDPQSMDCCNFVGGAYIAPQFLGTGMRIAVAKKNAKLVDILNYALQSLERDGKLIE
LYLRYFPISFY"
misc_feature 49051..49734
/locus_tag="BARCL_0047"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature 49051..49731
/locus_tag="BARCL_0047"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature order(49075..49077,49195..49197,49270..49272,49405..49407,
49519..49521)
/locus_tag="BARCL_0047"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(49468..49470,49480..49482,49498..49500)
/locus_tag="BARCL_0047"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 49612..49626
/locus_tag="BARCL_0047"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(49761..51293)
/locus_tag="BARCL_0048"
/db_xref="GeneID:10137300"
CDS complement(49761..51293)
/locus_tag="BARCL_0048"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158327.1"
/db_xref="GI:319898234"
/db_xref="GeneID:10137300"
/translation="MVARVTTVAFRGLEAIPVDVQVMISPGKIGMAIVGLADKAVAES
RERIQAALHACGLSMPNKRVTVNLAPADLPKEGSHYDLPIAIGLMLAMNLLPSEIAQK
YIILGELSLDGSINSVNGVLPTAMTALSLDKGLICPHKCGPEAAWANTEMDILAPETL
LTIINHFKGIQIQKRPQPRQYSTPTELPDLCEIKGQKAAKRALEVCAAGRHNLLFIGP
PGAGKSMLAQCLPSILPPLDSRELLDVALISSITGETTHNAISRYRPFRSPHHSASMA
AMIGGGLKGQPGEVSLAHNGVLFLDEFPEFSPQVLDSLRQPLESGECVIARANHHISY
PARIQLIAAMNPCRCGMAGEKGYVCSKGIRCQIDYQSRISGPLLDRIDLRIEVPALTA
MDLMQQKQSEKSYNVAKRVAQARFIQAKRFATLDLPHIRTNSDCPAKIIEQIAIPDQN
AATLLRDVSEKMHLSARAYHRILKVARTIADLDQAQHLARHHLAEAISYRLNNERLVA
IA"
misc_feature complement(49779..51254)
/locus_tag="BARCL_0048"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature complement(50877..51236)
/locus_tag="BARCL_0048"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature complement(50130..50714)
/locus_tag="BARCL_0048"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(50622..50645)
/locus_tag="BARCL_0048"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(50196..50198,50391..50393,50619..50642))
/locus_tag="BARCL_0048"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(50388..50405)
/locus_tag="BARCL_0048"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(50154..50156)
/locus_tag="BARCL_0048"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(49794..50096)
/locus_tag="BARCL_0048"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene 51758..53698
/locus_tag="BARCL_0049"
/db_xref="GeneID:10137301"
CDS 51758..53698
/locus_tag="BARCL_0049"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158328.1"
/db_xref="GI:319898235"
/db_xref="GeneID:10137301"
/translation="MKSKAAYSVVVGLWLVFTFARSVVAFELFGFRLFGKEKPASSSY
GMNSAEKSYTIEVVAPPGAPPEGVKIAKAASSLVSDQGKAVANSSGLLAKARSNYRTI
LAALYADGRYGGIISIKINGLEVADLSPLAQLPTQSSILITIDAGPQYVFNVANFNKA
FFLEKYKIGEILLMENLDYKVGAIAKSETILKAERWLIERWRQQGYAKASVISRDVVA
DHATRFVDAQITVNPGKKAYYSFLNVRNVSEQPRMDSAYIAWMTGLKLGQQYNPDALI
KANKRLARLDVFRAVTVREAETISPDGRLPLTLILEERKPRRFGIGGSYSTLDGVGLE
TYWMHSNLFGHAERFKIETKISGIGSRKEESYRLKNFDYLLGATFTKPGIITPDTDFA
AELKGEQDVLDNYTTTALKGQVGITHIFNDQLSGRVALAAFSGYSRDDYFGSRQFTTI
GLLSGLIYDGRNSTVNATKGLYGEAILEPLYETHFDNFVTKMTIEGRSYWAFDAKDHF
IFSTRVKLGTIIGGNIAELPSDTLFFAGGGGSVRGYAYRNIGIKTKNDTIIGGRSLVE
GSAELRLSFNNKIGFVSFIDGGFVGEKTYFNFSQQMKWGVGIGGRYMTGFGPFRFDVA
FPFKREKGDPRVGFYVGIGQAF"
misc_feature 51809..53695
/locus_tag="BARCL_0049"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane]; Region: COG0729"
/db_xref="CDD:31073"
misc_feature 52778..53695
/locus_tag="BARCL_0049"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene 53749..58341
/locus_tag="BARCL_0050"
/db_xref="GeneID:10137302"
CDS 53749..58341
/locus_tag="BARCL_0050"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158329.1"
/db_xref="GI:319898236"
/db_xref="GeneID:10137302"
/translation="MMSYFVFAQRGNSLAEEKMRDGGSWFVSFIERKLSAPNRQIRLH
NVQGALSSQASIDTITVSDNKGIWLKINNAKVDWNRLALLRGHVEINQLSAEKIILLR
KPQSFSSISFFEADQFSIPKLPMAIFVNTLMVDCVTFEKDIFGLSSDVSLKGHLTLDG
DEFDGNIEVQRIDESGYFSILTKISNNDRTAKIDIVADEPQNGIMANILELEKRPALN
LTVKGNGTFDDLVVMLHLEANQRPILEGNFILAGVPEGHSLLTNLEGKIGLLMPGQYR
SLFESNVALKAKTTMTNEGAMQLNYITIQGDAIDVVANAEITNDGFLRRLFVDGKIAF
DKEKSSTRLPRLETRTRIDNLALTVDYGRKGQKTWKGRFAIHNLKNDNIHIRDAVFDM
GGISENLDNLVSRHVGIQINGTLQGITSIKDSFAEDLNQPVHIHLDTDILSGKPMLIH
DFSITAQDFSIWLKGQMDRFIFKGDLGVKAQTLASLGLLNGQSFSGGADIKAKGSFNL
IESAFDLKILGTADNVKIGKEAVDHLLKGKLLLSGDIAWNTMGLIVHDFHLKNQFADI
KADGHFAKESAEMDFSAQMSNLALLDPRMDGAVTIKGTAKGHNNLIKISTNAYITEAF
LVGKKLQNTIFNMNVLMDNTSSVASYLTGFIEGKGTFAEKPLRLSASFNNADHIWNLQ
GINIKGGNASITGNIAQTFERFLKGNLHIDAEDISTLSALFLQKGSGKVKGDFIFDEI
NNQQVANLKASIDHLILAKNKIKKLAIQADIFDPFGAIQLKGSFNAEHIRTPLIMLNH
LNAQAMNNNGQTVFNVQALLHNDMNAKFSGRVITEGLPAGVKQKVQLETIDVKQVNLH
AALLKPATIIFDKNGITMNKLGISINGGEIALAGNIKDNLNLHLTMSAVPANLANFWK
PDLGAVGTLTGDIMVSGSLTKPEIIYDVKGQALTIASFQEKKIMPFAFSAKGKTIDQA
LILYAELSGDGLQAQAQGKVPLDKSDFDLHVNLKNFPAHLVNGFIKGQPLGGELVGKV
DIGGDWKSLSTYFELSSQNLTVMTHKGPESINMNVRGSYKKSTFYIEHMIASDAKELD
LFVNGQIFLNNSRAELNIKGTMPLAFMNQFVAERGAHVTGTLKIDSTFSGALSQPQLR
GYFSVSNGHFLDTQTNLELNNIRLEGKLNGDHMILEHTSSSYGGSLSASGRISNDLQT
DLVIHLDRAHYNDGSMIFATLTGKMTVTGYFLRDLVIGGDITVEKAELLIPDNFQNAA
FLDLKHKNLIASVQKTLERANVKTYNHNQDSSEKSSSAVQLDVRINAHNKFFVRGRGV
DAELGGSINLKGPLYSMHPVGELQMIRGRFDILSQRLNFDKGHASFNGNLNPTVYFIT
NNNNGDIRVNVIVSGTIDNLDIQFSSQPILPQDEVLARLIFNRSLNELSPFQIVQLTA
AAAELFGASNTSLLNTLRTHIGLDDLDVIVDKKGNTGLRVGRYIHDNIYLGFEAGSNG
TTKGTINLDVSRHLKAKGAIGSEENTSFGLFYEKDY"
misc_feature 54763..58338
/locus_tag="BARCL_0050"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2911"
/db_xref="CDD:32735"
misc_feature 57343..58338
/locus_tag="BARCL_0050"
/note="Family of unknown function (DUF490); Region:
DUF490; pfam04357"
/db_xref="CDD:202984"
gene complement(58382..60148)
/gene="msbA"
/locus_tag="BARCL_0051"
/db_xref="GeneID:10137303"
CDS complement(58382..60148)
/gene="msbA"
/locus_tag="BARCL_0051"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004158330.1"
/db_xref="GI:319898237"
/db_xref="GeneID:10137303"
/translation="MAKTQISSSDKHLIIRLLKDNFHKHIHLYSVAIVSMIIISFTTV
ISAWIMRDVVNHIIDGQNFNMIVFISSVIVFIFILKGIATFAQTYFLSKAGNSIVAEQ
QRKIYAHLIQQDISFYQNNTSSDLLVRVTHSATAARNIIDIIITTFVRDLLSVIGLLF
VMFIQNFTLIAITLIIGPLAFLGIRIALKYVRSLMEKELLSLGEIIKIVQETTIGIYV
IKAFSLEKLMQKRMNKAIYDVERQANSIAMLEAATNPIMETLAGIAIAGVICFSGYLA
SQRAGIQGELMSFIVALLLAYEPAKRLANVRVKIESGLVSIRTMFEILDHPLTVTEHK
EAKDLNKMQNSIRFEHVSFAYTNDQMVLNDINLEIEAGKMTALVGPSGSGKSTFISLL
MRLYDPTQGRILINDQDIRYITFRSLRNLMAYVGQDTFLFQGSVKYNIGLGKEGANDN
DIIKAAKAANAHDFIVDLPNGYDTQVGDNGNNLSGGQKQRIAIARAMLHDSEILLLDE
ATSALDSHTEAQINEALDLLTQGRTTIVIAHRLSTIARAHKIVVIQNGHLVEQGTQQE
LLAKEKGVYKKLHHTQFKEQNF"
misc_feature complement(58394..60058)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="lipid A export permease/ATP-binding protein MsbA;
Region: MsbA_lipidA; TIGR02203"
/db_xref="CDD:131258"
misc_feature complement(59261..60058)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(58403..59113)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(58991..59014)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(58532..58534,58625..58630,58868..58870,
58988..58996,59000..59005))
/gene="msbA"
/locus_tag="BARCL_0051"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(58868..58879)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(58673..58702)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(58625..58642)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(58607..58618)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(58526..58546)
/gene="msbA"
/locus_tag="BARCL_0051"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(60331..60825)
/gene="infC"
/locus_tag="BARCL_0052"
/db_xref="GeneID:10138319"
CDS complement(60331..60825)
/gene="infC"
/locus_tag="BARCL_0052"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_004158331.1"
/db_xref="GI:319898238"
/db_xref="GeneID:10138319"
/translation="MRSNQDIRVPRVQLINDEGQNQGIVTIQEALARAADIGLDLVEI
VPNAEPPVCKIVDLGKLKYQNQKKAAETRKKQKIIEIKEIKMRPNVDVHDYEVKLRAI
RRFIDNGDKVKITLRFRGREMTHQDLGIKLLQRVKENTNEIAKIESEPKFEGRQIMMV
IAPK"
misc_feature complement(60334..60825)
/gene="infC"
/locus_tag="BARCL_0052"
/note="translation initiation factor IF-3; Reviewed;
Region: infC; PRK00028"
/db_xref="CDD:178804"
misc_feature complement(60607..60822)
/gene="infC"
/locus_tag="BARCL_0052"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature complement(60334..60570)
/gene="infC"
/locus_tag="BARCL_0052"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 61050..61829
/locus_tag="BARCL_0053"
/db_xref="GeneID:10138249"
CDS 61050..61829
/locus_tag="BARCL_0053"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158332.1"
/db_xref="GI:319898239"
/db_xref="GeneID:10138249"
/translation="MNQNIPCQFFSFEDTILAVRHHKGNRSPGLIWLSGYRSDMLGSK
ATVVNSFAQKNGFSCLRFDYSGHGESEGDFFQGTISRWVKESLAVIEAYCEGPQILIG
SSMGGWIAIRLAMMLAQKNKAPVGMILIAPAPDFTQTLVEPALSAEELKMLEEKGYCE
RPSADSLEPLLFTKALIEDGRNNCVMKECIDVGCPIHILQGMEDDKIPYQHTLTLLNY
LPLHDVTLTLVRDADHRFSRSQDLDCLEKVLMSLIDRINAE"
misc_feature 61134..61751
/locus_tag="BARCL_0053"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
gene 61864..62592
/locus_tag="BARCL_0054"
/db_xref="GeneID:10137304"
CDS 61864..62592
/locus_tag="BARCL_0054"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158333.1"
/db_xref="GI:319898240"
/db_xref="GeneID:10137304"
/translation="MVIYEQDFILSNRIVPLQVKEHKNARRLTLRIDIARQKIYLTTP
PAVERCVVQFFIEKNRSWIEKRLAYGGIIREGFHLKEGSRIPVLGASHVILRKEERGV
AEIITGDSEQESKIIIYSRLEHLPRRVADVLKKQAKIVIAQLVAHYSYKVGRKVKSIS
YKDTRSRWGSCSTDGRLSFSWRLIMAPKEVVEYVVAHEVAHLVEMNHGERFWALCEKL
CPERKTYQAWLKKNGHILQRINFH"
misc_feature 61939..62559
/locus_tag="BARCL_0054"
/note="Protein of unknown function DUF45; Region: DUF45;
pfam01863"
/db_xref="CDD:145171"
gene 62782..63948
/gene="dapE"
/locus_tag="BARCL_0055"
/db_xref="GeneID:10137305"
CDS 62782..63948
/gene="dapE"
/locus_tag="BARCL_0055"
/EC_number="3.5.1.18"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_004158334.1"
/db_xref="GI:319898241"
/db_xref="GeneID:10137305"
/translation="MLVLTDPVQLLQALIRCPSVTPHEAGVLSTLEHFLRKMGFCVER
PVFVDKNTEDVENLYAKIGSEGPHLMFAGHSDVVPPGELENWTYPPFEGVINQGRLYG
RGAVDMKGGIACFIAALARFLKKKSLKGMVSFLITGDEEGPAINGTVKLLEWAVKKGE
KWNAAIVGEPTSINIVGDTIKIGRRGSISGIITVKGYQGHVAFPERAANPLPLANKLI
QALTQNALDQGTKDFQASHLELTSIDTGNFSVNIIPAQTVIRFNIRYNDLWTKETLIA
EIEKRLAFVHSKNDQVPYYQLEWIYGLGGVFLTKNDKLVGILSNAIKSITGNIPECST
SGGTSDARFIKDYCPVVEFGLPGQTMHMVDEYVTLDAIENLTSIYERFITDFFA"
misc_feature 62794..63945
/gene="dapE"
/locus_tag="BARCL_0055"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature 62803..63930
/gene="dapE"
/locus_tag="BARCL_0055"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature order(63001..63003,63100..63102,63199..63204,63286..63288,
63862..63864)
/gene="dapE"
/locus_tag="BARCL_0055"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature order(63346..63348,63379..63390,63406..63408,63412..63417,
63424..63429,63433..63438,63445..63447,63490..63492,
63496..63519,63538..63543,63565..63567,63571..63573,
63787..63789)
/gene="dapE"
/locus_tag="BARCL_0055"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene complement(63999..65198)
/gene="hemN"
/locus_tag="BARCL_0056"
/db_xref="GeneID:10138062"
CDS complement(63999..65198)
/gene="hemN"
/locus_tag="BARCL_0056"
/EC_number="1.3.99.22"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="oxygen-independent coproporphyrinogen III
oxidase"
/protein_id="YP_004158335.1"
/db_xref="GI:319898242"
/db_xref="GeneID:10138062"
/translation="MTKPFGIYIHWPFCVSKCPYCDFNSYVRINGVDQPRFAAAFERE
MTTQAHEIGPRHITSIFIGGGTPSLMTPQTVDRLLQAIAKNWTIDDKTEITLEANPSS
VEADRFRGYRLAGVNRLSLGVQALNDKALQQLGRLHNVKQALYAINLAREIFPRLSFD
LIYARPKQTLKQWESELLQAINLAADHLSLYQLTIEDGTNFKKLHAAGKLILPTSERA
ANLYTLTQEITTMYGLPAYEISNHAIPGAESCHNLLYWRYHEYAGFGPGAHGRFIKQQ
LKNSSFLSETLLSKTENHNRYVTINEKYPENWLKLVETIGHGCIDTEQLTQEQQANEM
LLMGLRLSEGLNLKRYETLSGQSLSPKKLISLQQKGLIEMTSNQHLKATATGRILLDH
IICQLAN"
misc_feature complement(64002..65198)
/gene="hemN"
/locus_tag="BARCL_0056"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09057"
/db_xref="CDD:181629"
misc_feature complement(64038..64226)
/gene="hemN"
/locus_tag="BARCL_0056"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(65195..65842)
/locus_tag="BARCL_0057"
/db_xref="GeneID:10138214"
CDS complement(65195..65842)
/locus_tag="BARCL_0057"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="HAM1-like protein"
/protein_id="YP_004158336.1"
/db_xref="GI:319898243"
/db_xref="GeneID:10138214"
/translation="MRSIAIKKLVIATHNTGKLHEITRLIAPFGVTTQSVKELGLPEP
KETGTTFEENAYIKAFAAAKATNLPALSDDSGIEIDALNGAPGVYTADWALQSDGTRD
FLKAMQKVENELQKVASLKKNQRKSRFISVICIAYPDGYADYFRGSVEGTCIWPPRGN
KGFGFDPIFLPDGYENTFGEMSTEQKHSWKFNGQTPLSHRARAFKLFAENLLALS"
misc_feature complement(65216..65818)
/locus_tag="BARCL_0057"
/note="NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against mutagenesis
by the base analog 6-N-hydroxylaminopurine (HAP) in E.
Coli and S. cerevisiae. A...; Region: HAM1; cd00515"
/db_xref="CDD:29953"
misc_feature complement(order(65243..65248,65345..65350,65354..65356,
65456..65458,65570..65575,65612..65620,65780..65782,
65789..65794,65798..65800))
/locus_tag="BARCL_0057"
/note="active site"
/db_xref="CDD:29953"
misc_feature complement(order(65567..65569,65576..65578,65585..65587,
65594..65599,65699..65707))
/locus_tag="BARCL_0057"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29953"
gene 66343..67416
/gene="hrcA"
/locus_tag="BARCL_0058"
/db_xref="GeneID:10137306"
CDS 66343..67416
/gene="hrcA"
/locus_tag="BARCL_0058"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat-inducible transcription repressor HrcA"
/protein_id="YP_004158337.1"
/db_xref="GI:319898244"
/db_xref="GeneID:10137306"
/translation="MMKQIPLDDALKVLDKRSRDIFCHIVEAYLNDGEPVGSRNLSRL
LQQTLSPATIRNVMSDLEHLGLIYAPHVSAGRMPTQSGLRFFVDAFMEVGDLPTEERE
NIENQVKEAGNAQSVEHFLIQASQILSDLSRGAGLVLATKQEGTLKHIEFVGLDREHA
LAVLVTQKGDVENRIIHLPEGVTHAQLTEATNFLNAHIQGRTLNEAKLEIARLCSETR
AALHQFSQHLVETGLALWGGEDSDNKMHLIVRGRSNLLEDVKAGEDLERLRHLFDDLE
TRESMAQLLDLADEGLGVRIFIGSENKLFSLSGSSLVVAPYCDTQKRVIGAVGVIGPT
RLNYARIVPMVDYTAQLVSQLLR"
misc_feature 66382..67413
/gene="hrcA"
/locus_tag="BARCL_0058"
/note="heat-inducible transcription repressor;
Provisional; Region: hrcA; PRK00082"
/db_xref="CDD:178849"
gene 67537..68199
/gene="grpE"
/locus_tag="BARCL_0059"
/db_xref="GeneID:10138224"
CDS 67537..68199
/gene="grpE"
/locus_tag="BARCL_0059"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock protein GrpE"
/protein_id="YP_004158338.1"
/db_xref="GI:319898245"
/db_xref="GeneID:10138224"
/translation="MSDEKNKFDDASFENSNLKKSGDCDVFKQAPDEFLKMNEEEIFP
DAEREESEPADPLVVLQDENKELRDQILRLAAEMENLRRRTARDVADAKAYSIANFAR
DMLSVSDDLHRALEAIPKDEGENDSGLKTLVEGVEMTERAMMAALERHGVKKIDPEGQ
KFDPHFHQAMFEIPNADVPENTVQQVVQAGYIIGERVLRPAIVGVTKGGVKEASVESE
TV"
misc_feature 67537..68178
/gene="grpE"
/locus_tag="BARCL_0059"
/note="heat shock protein GrpE; Provisional; Region:
PRK14141"
/db_xref="CDD:172630"
misc_feature 67726..68151
/gene="grpE"
/locus_tag="BARCL_0059"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature order(67732..67737,67744..67749,67756..67758,67768..67770,
67777..67782,67822..67824,67834..67836,67843..67845,
67864..67866,67876..67878,67942..67944,67951..67953,
67984..67986)
/gene="grpE"
/locus_tag="BARCL_0059"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature order(67783..67785,68026..68028,68035..68049,68095..68097,
68122..68124,68134..68136)
/gene="grpE"
/locus_tag="BARCL_0059"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene complement(69099..70871)
/gene="batS"
/locus_tag="BARCL_0060"
/db_xref="GeneID:10138202"
CDS complement(69099..70871)
/gene="batS"
/locus_tag="BARCL_0060"
/EC_number="2.7.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="two-component sensor kinase BatS"
/protein_id="YP_004158339.1"
/db_xref="GI:319898246"
/db_xref="GeneID:10138202"
/translation="MKKNTLLNKSSSNTSPIRFSMFVHLYFRIQRLLRQLFFSSLTRR
IVILNLAALGILVTSILYLNQFRNGLIEAKIESLRTQGKIIAGAIAASATIDTNSILI
DPQKLLELQAGESVTPTLQSTDTWDFPINPEQVAPLLRRLIAPKTTRARIYDRDATLL
LDSRVLYSSGEVFTYNLPPIQMKQNLWEHLKSFFFNLLYSNGITVDRRQVKDNETIHP
EVHLALNGSSATAKRRNRQGQLIVSVAVPVQRYRAVVGALLLSTTGSDIDDIVESEKL
IIFKIFAVVGSVFLVLSIFLAHTIAHPLSKLSSSANRVRHGRSKRIKIPDFSKREDEI
GRLSTSISDMTNALYTRIEAIERFAADVSHELKNPLTSLRSAVETLPLTKNKAQQTQL
LEIIQHDVHRLDRLITDISDASRLDAELARETAKIVDMSSLLKSLIQAIREVHCNKQN
IDINFNIIPRTNGKPYLIVGHELRLGQVISNLIENARSFVPRKNGKICITMKNNASNL
ILTVEDNGPGIRSENIERIFERFYTDRPSKDAFGQHSGLGLAISQQIIEAHNGTLTAE
NIVDPKFKKEKTGARFIITLPLAK"
misc_feature complement(70560..70790)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Sensor N-terminal transmembrane domain; Region:
Sensor_TM1; pfam13755"
/db_xref="CDD:205929"
misc_feature complement(70158..70484)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Stimulus-sensing domain; Region: Stimulus_sens_1;
pfam13756"
/db_xref="CDD:205930"
misc_feature complement(69105..70142)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(69828..70031)
/gene="batS"
/locus_tag="BARCL_0060"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature complement(order(69828..69833,69840..69845,69849..69854,
69861..69866,69870..69875,69930..69932,69936..69941,
69948..69953,69957..69962,69969..69974))
/gene="batS"
/locus_tag="BARCL_0060"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(69627..69818)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(69642..69644,69654..69656,69663..69665,
69675..69677,69684..69686,69696..69698,69744..69746,
69753..69755,69765..69767,69774..69776,69786..69788,
69798..69800))
/gene="batS"
/locus_tag="BARCL_0060"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(69780..69782)
/gene="batS"
/locus_tag="BARCL_0060"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(69114..69449)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(69126..69128,69132..69137,69171..69173,
69177..69179,69225..69236,69315..69320,69324..69326,
69330..69332,69336..69338,69408..69410,69417..69419,
69429..69431))
/gene="batS"
/locus_tag="BARCL_0060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(69417..69419)
/gene="batS"
/locus_tag="BARCL_0060"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(69228..69230,69234..69236,69318..69320,
69324..69326))
/gene="batS"
/locus_tag="BARCL_0060"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(70911..71633)
/gene="batR"
/locus_tag="BARCL_0061"
/db_xref="GeneID:10138005"
CDS complement(70911..71633)
/gene="batR"
/locus_tag="BARCL_0061"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcriptional regulator BatR"
/protein_id="YP_004158340.1"
/db_xref="GI:319898247"
/db_xref="GeneID:10138005"
/translation="MKDTPTVTQTIVLVDDDSNILTSLSFALETEGYRVESYTDGSAA
LKNLTVNPPHLAIFDIKMPRMDGMELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGA
DDFITKPFSQRLLIERVKAVLRRSNARNQPLPTGATPASSLRRGDLVMDQERHICTWK
NKPVILTVTEFLILQTLAQRPGVVKSRDALMDAVYNDQIYVDDRTIDSHIKRLRKKFK
QVDNDFAMIETLYGVGYRFHEV"
misc_feature complement(70917..71603)
/gene="batR"
/locus_tag="BARCL_0061"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(71265..71600)
/gene="batR"
/locus_tag="BARCL_0061"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(71307..71312,71319..71321,71376..71378,
71433..71435,71457..71459,71586..71591))
/gene="batR"
/locus_tag="BARCL_0061"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(71457..71459)
/gene="batR"
/locus_tag="BARCL_0061"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(71433..71441,71445..71450))
/gene="batR"
/locus_tag="BARCL_0061"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(71304..71312)
/gene="batR"
/locus_tag="BARCL_0061"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(70923..71207)
/gene="batR"
/locus_tag="BARCL_0061"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(70932..70934,70947..70949,70983..70988,
71010..71012,71019..71021,71073..71078,71133..71135))
/gene="batR"
/locus_tag="BARCL_0061"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 72028..72129
/locus_tag="BARCL_0062"
/db_xref="GeneID:10138004"
CDS 72028..72129
/locus_tag="BARCL_0062"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158341.1"
/db_xref="GI:319898248"
/db_xref="GeneID:10138004"
/translation="MLKQRDEMLNISNYEKEENDCESTVDKFLFEIE"
gene complement(72315..72749)
/locus_tag="BARCL_0063"
/db_xref="GeneID:10137307"
CDS complement(72315..72749)
/locus_tag="BARCL_0063"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158342.1"
/db_xref="GI:319898249"
/db_xref="GeneID:10137307"
/translation="MFIALPATVNAHQYKLGDLEIIHPWTRVTPKGSKVSSGYLYIIN
HSDTPDRLIAVSTNRAQETEIHSMTITTDIMQMKKISNGIEIPGKGEITLKPGGHHIM
FMGISQPFQQNEKINAKLIFEKAGTIDVDFFVNAIGVKPSSK"
misc_feature complement(72357..72689)
/locus_tag="BARCL_0063"
/note="Protein of unknown function (DUF461); Region:
DUF461; pfam04314"
/db_xref="CDD:190941"
gene 73370..73492
/locus_tag="BARCL_0064"
/db_xref="GeneID:10137308"
CDS 73370..73492
/locus_tag="BARCL_0064"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158343.1"
/db_xref="GI:319898250"
/db_xref="GeneID:10137308"
/translation="MYKKIYLLFSIAVKSKVQKKLKINSILYNFYCAIHIFIRI"
gene 73775..75664
/gene="dnaK"
/locus_tag="BARCL_0065"
/db_xref="GeneID:10137309"
CDS 73775..75664
/gene="dnaK"
/locus_tag="BARCL_0065"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_004158344.1"
/db_xref="GI:319898251"
/db_xref="GeneID:10137309"
/translation="MAKVIGIDLGTTNSCVSVMDGTNSKVIENSEGARTTPSVVAFTD
SGERLVGQPAKRQAVTNPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIVKGDNGDAW
VEEAGKKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKI
AGLEVLRIINEPTAAALAYGLDKKDGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNG
DTFLGGEDFDMRLVSYFAEEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEV
NLPFITADQSGPKHLTMKLTRAKFESLVEDLVQRTIEPCKAALKDAGLNAGEIDEVVL
VGGMTRMPKIQEVVQSFFGKDPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPL
SLGIETLGGVFTRLIERNTTIPTKKSQTFSTADDNQNAVTIRVFQGEREMANDNKLLA
QFDLVGIPPAPRGVPQIEVTFDIDANGIVNVSAKDKGTGKEHQIRIQASGGLSDADIE
KMVQDAEAHAAEDKKRRESVETRNKAESLVHSTEKSLNEYGDKLSAEDKGQIETAIAG
LKTALEGSDAEEVSIKMQKLAEASMKLGQVMYEDSSAKANTESDTKNDDVVDADFEEI
NDKKK"
misc_feature 73775..75658
/gene="dnaK"
/locus_tag="BARCL_0065"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 73775..74905
/gene="dnaK"
/locus_tag="BARCL_0065"
/note="Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins; Region:
HSPA9-like_NBD; cd11733"
/db_xref="CDD:212683"
misc_feature order(73802..73813,73982..73984,74285..74287,74357..74362,
74366..74368,74444..74446,74558..74560,74567..74569,
74579..74581,74780..74788,74792..74794)
/gene="dnaK"
/locus_tag="BARCL_0065"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(73856..73858,73865..73867,73919..73921,73931..73933,
73940..73945,73949..73954,74159..74170,74528..74530,
74537..74542,74549..74551,74603..74605,74609..74614)
/gene="dnaK"
/locus_tag="BARCL_0065"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(74216..74221,74225..74230,74273..74278,74282..74284,
74405..74416)
/gene="dnaK"
/locus_tag="BARCL_0065"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212683"
gene 75821..76948
/gene="dnaJ"
/locus_tag="BARCL_0066"
/db_xref="GeneID:10138081"
CDS 75821..76948
/gene="dnaJ"
/locus_tag="BARCL_0066"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock chaperone protein DnaJ"
/protein_id="YP_004158345.1"
/db_xref="GI:319898252"
/db_xref="GeneID:10138081"
/translation="MKVDYYEILGVTRGCDDKKLKSAFRRLAMQYHPDRNAGDKEAER
KFKEIGEAYEVLKDPQKRAAYDRFGHAAFENNGREGSSPFGGGFADIFEDFFGEIMGS
GHRKRSDGRERGADLSYNMEVTLEEAFAGKTAQINIPSSIICDACEGLGTKKGSKPKT
CGTCHGVGRVRAAQGFFSIERTCPVCHGRGEIITDPCLKCHGTKRVEENRSLRVNIPA
GIEDGTRIRLSGEGDAGIGGGPAGDLYIFLSIKAHEFFQRDGADLHCRVPISMVTAAL
GGEFEVSSLDGVKARVKVPEGTQNGRQFRLKGKGMPMLRQQAKGDLYIHITIETPQKL
TQEQRTLLQEFDKLSNHENSPQSHGFFARMKEFFDNIANQN"
misc_feature 75821..76927
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:182712"
misc_feature 75830..75994
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(75914..75922,75947..75949,75956..75961,75968..75973)
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 76163..>76249
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature order(76175..76177,76220..76237)
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 76250..76432
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(76250..76252,76259..76261,76301..76303,76310..76312,
76367..76369,76376..76378,76409..76411,76418..76420)
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 76433..76822
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(76631..76636,76643..76648,76709..76720,76808..76822)
/gene="dnaJ"
/locus_tag="BARCL_0066"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 77189..78094
/gene="argB"
/locus_tag="BARCL_0067"
/db_xref="GeneID:10138079"
CDS 77189..78094
/gene="argB"
/locus_tag="BARCL_0067"
/EC_number="2.7.2.8"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Acetylglutamate kinase"
/protein_id="YP_004158346.1"
/db_xref="GI:319898253"
/db_xref="GeneID:10138079"
/translation="MENIENNDEKAYEKQAAFLSSALPYMQKYENETIVVKYGGHAMG
DPALGRAFARDIALLKQSGINPIVVHGGGPQIAEILTKMGVESRFENGLRVTDEKIVE
VVEMVLAGSINKKIVALINAEGEWAIGLCGKDGNMVFAEKSYKTVVDPDSHVERVVDL
GFVGEPVEIDRTLLDLLACSEMIPVIAPVAPGRDGKTYNINADIFAGALAGAVKAKRL
LFLTDVSGVLDREKKLLKKLTIPKAKKLIKDGTISGGMIPKVETCIKAIQEGVEGVVI
LNGKTPHSILLELFTEHGAGTLIVS"
misc_feature 77243..78085
/gene="argB"
/locus_tag="BARCL_0067"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature order(77243..77251,77255..77257,77264..77269,77348..77350,
77360..77362,77372..77374,77432..77437,77492..77494,
77501..77506,77519..77521,77528..77530,77540..77542,
77561..77563,77567..77575,77579..77581,77585..77596,
77705..77707,77732..77734,78035..78037,78044..78049,
78059..78061)
/gene="argB"
/locus_tag="BARCL_0067"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature 77243..77269
/gene="argB"
/locus_tag="BARCL_0067"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature order(77297..77299,77306..77311,77789..77791,77852..77860,
77870..77872,77939..77941,77945..77947,77951..77956,
77963..77965)
/gene="argB"
/locus_tag="BARCL_0067"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature order(77399..77404,77465..77470,77783..77785,77789..77794)
/gene="argB"
/locus_tag="BARCL_0067"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene 78137..79021
/locus_tag="BARCL_0068"
/db_xref="GeneID:10137979"
CDS 78137..79021
/locus_tag="BARCL_0068"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158347.1"
/db_xref="GI:319898254"
/db_xref="GeneID:10137979"
/translation="MKQSKYSLFSKQELALFFATVLWGITFLIIHIAVHYSGPLFFVG
FRFIVAALISAVVFWRSMKDINIYEIFAGMAIGFGIFLGYTFQTAGLQTIISSQSAFI
TAIYVPIVPVLQWIFLKKLPHLCSWIGIIFAFIGLILVSGQDLKGICFSKGEILTLLG
ALAIAGEIMLIGFFANKVDSRRITIIQLFFGSLFAFCCMPLMGESIPKFSWVWFNIGV
GLALMSAVIQLTMNWAQKSVSPTRATLIYAGEPVWAGIVGRLAGEYLSPSALLGGLFI
MIGIVVAELKPSQWRKKK"
misc_feature 78197..78508
/locus_tag="BARCL_0068"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 78665..78982
/locus_tag="BARCL_0068"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(79220..80896)
/locus_tag="BARCL_0069"
/db_xref="GeneID:10137310"
CDS complement(79220..80896)
/locus_tag="BARCL_0069"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type f : factor"
/codon_start=1
/transl_table=11
/product="Bartonella effector protein (Bep); substrate of
VirB T4SS"
/protein_id="YP_004158348.1"
/db_xref="GI:319898255"
/db_xref="GeneID:10137310"
/translation="MEKTLSNAAIATESISNQALPSHYNYPNSLTLKNKYGITNHKDF
TNKCAHDSAKAAINLRQEEPPKKFDSSYLKYLHKQLFKETFEWAGHTRDLPFTFADGT
VGVMPEMIRSNWRTEQPIIFATGNKVQDGLKNIDKMLIEKNNLQGLSHKEFIENIAEI
FACLNYTHPFREGNGRTQRIFCEKLAQAAGYYLDFSVVTKERMSEASITAAQDSNLEP
MKKLFDDISNPIKTAVLKECINSLKNIDHKNINDCIIVAADKGLTYKGIYTDNSPDSI
ILKTDNIYIICSKNDLAPEQLKTLKLGDECTITVPMKQNIENTLIPKEKLPPLTKNAI
IENIKKDTLIQAKLRQVTHLSKLVYGSSKILNNQLELINTNQKSGEQLSAQITSSPQS
ISKLAGIKIFGMKNSMRKKAEDNIIKLANSIKSYGSAVKNVETTMIQQHKSEQKRLSK
TVKLPSTKLQNILNLPEEKQKEVLLEEKSLASSIGKELTDFISSLNARLSPSERKMIL
ESNHQQFAKNVGISESQAETIIKTAQKAKEVYQKMQKPAVDLTKHLIVSG"
misc_feature complement(80228..80827)
/locus_tag="BARCL_0069"
/note="Fic/DOC family; Region: Fic; cl00960"
/db_xref="CDD:207264"
gene complement(80922..81089)
/locus_tag="BARCL_0070"
/pseudo
/db_xref="GeneID:10137311"
misc_feature complement(80922..81089)
/locus_tag="BARCL_0070"
/inference="ab initio prediction:AMIGene:2.0"
/note="type IV secretion system protein virB11;Evidence 7
: Gene remnant; PubMedId : 12421311, 12727865; Product
type e : enzyme"
/pseudo
/db_xref="PSEUDO:CBI75751.1"
gene complement(81025..81273)
/locus_tag="BARCL_0071"
/pseudo
/db_xref="GeneID:10137312"
misc_feature complement(81025..81273)
/locus_tag="BARCL_0071"
/inference="ab initio prediction:AMIGene:2.0"
/note="type IV secretion system protein virB11;Evidence 7
: Gene remnant; PubMedId : 12421311, 12727865; Product
type e : enzyme"
/pseudo
/db_xref="PSEUDO:CBI75752.1"
gene complement(81270..82550)
/gene="virB10"
/locus_tag="BARCL_0072"
/db_xref="GeneID:10137313"
CDS complement(81270..82550)
/gene="virB10"
/locus_tag="BARCL_0072"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 15569944; Product type m : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB10"
/protein_id="YP_004158349.1"
/db_xref="GI:319898256"
/db_xref="GeneID:10137313"
/translation="MNDEMDEISFNDRDTIKDRNRTEDRDTIKDNQGKKESFNVGKAI
ALLILFSVCIYLMYAILSTSKDTKKQPIELPKETTNKQTELFQSVKPTLAPLELVDKN
KTLLPKVELPTPTINQPESNNSDNKLLEAAQRAPVLAYSNPNQQQANTANNNDNNGAS
PSQNNNPDKTAQQFNQLLKPTKLDGIRASTLGNRNYIIAMGASIPCILETAVSSEQQG
FVSCIVSRDILSDNGRVVLLDKGTQIVGEYRAGLKKGQTRLFVLWNRAKTPSGVIITL
GSPATDALGRSGIDGDIDNHWFERLGSALLVSIVRDATNYANDWINLPKQQKEEKETT
NILSAGADIFSSGTSGIGTISAGVDMARMLAENYINIPPTLTKNQGEMINVFVVRDLD
FSTVYKLKIIENNKQIIHRAFSGDFNKNSMVTPK"
misc_feature complement(81372..81965)
/gene="virB10"
/locus_tag="BARCL_0072"
/note="Bacterial conjugation TrbI-like protein; Region:
TrbI; pfam03743"
/db_xref="CDD:190736"
gene complement(82547..83407)
/gene="virB9"
/locus_tag="BARCL_0073"
/db_xref="GeneID:10138660"
CDS complement(82547..83407)
/gene="virB9"
/locus_tag="BARCL_0073"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 15866936; Product type m : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB9 protein"
/protein_id="YP_004158350.1"
/db_xref="GI:319898257"
/db_xref="GeneID:10138660"
/translation="MIRVKIFFLTLIVAISCHASVSWAEISPVSAHKDNRIRFINYDP
YNVTKIIGSIRSSVQIEFANDENIAYIGIGNSVAWQVAPAGHFVFLKPREVQPTTNLQ
IVTTRPDGTKRSYQFELQVRKGDVSVGNDTYFLVKFRYPEDEALRKKLAEEAKVQQKE
EEFVDDILNMHEHFGPRNWAYVAQGSPIIEPTSVYDNGKTTTFTFLGNNEIPAIYLVS
LDGQESIVPKSIKGNQVIVHAIAMQFTLRRGNEVLCIYNKGFIPRGINPETGTTSPSV
QREVNVGKQP"
misc_feature complement(82631..82885)
/gene="virB9"
/locus_tag="BARCL_0073"
/note="VirB9/CagX/TrbG, a component of the type IV
secretion system; Region: VirB9_CagX_TrbG; cd06911"
/db_xref="CDD:132874"
misc_feature complement(order(82640..82660,82673..82675,82823..82840,
82853..82873))
/gene="virB9"
/locus_tag="BARCL_0073"
/note="VirB7 interaction site; other site"
/db_xref="CDD:132874"
gene complement(83404..84087)
/gene="virB8"
/locus_tag="BARCL_0074"
/db_xref="GeneID:10138685"
CDS complement(83404..84087)
/gene="virB8"
/locus_tag="BARCL_0074"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 11371528, 12421311; Product type m : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB8"
/protein_id="YP_004158351.1"
/db_xref="GI:319898258"
/db_xref="GeneID:10138685"
/translation="MRRSQMKSDEFNEYIREARSFDIDRMRNMRLQMKIFMALTVLFG
LMAIALALAVVALTPLKTVEPFVIRVDNSTGIVDVVSVLKDEPQNYDEAITRYFVSKY
IRARESFQLSETANNFRIISLLSSLEEQNRFAKWYSGNNPESPQNIYQNMTVAITIKS
ISFLSKDLIQVRYYKTIRDPNGKEDISHWVSVMNFSYVNARLSVEDRLINPLGFQVSA
YRSDPEVVQ"
misc_feature complement(83416..84039)
/gene="virB8"
/locus_tag="BARCL_0074"
/note="VirB8 protein; Region: VirB8; pfam04335"
/db_xref="CDD:190947"
gene complement(84062..84388)
/gene="virB7"
/locus_tag="BARCL_0075"
/db_xref="GeneID:10138682"
CDS complement(84062..84388)
/gene="virB7"
/locus_tag="BARCL_0075"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 8655494; Product type pm : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB7, 15 kDa
Antigen"
/protein_id="YP_004158352.1"
/db_xref="GI:319898259"
/db_xref="GeneID:10138682"
/translation="MKLKITIILILVIALIGCASLKSGPQKLPRCNGQNVRVLNQGKW
NKWSWDDQNVLQHNTAVKPVPRAIILNTLENEIPKAHVELNTPPVDSIKHQAPSYKNA
EITDEK"
gene complement(84578..85570)
/gene="virB6"
/locus_tag="BARCL_0076"
/db_xref="GeneID:10138679"
CDS complement(84578..85570)
/gene="virB6"
/locus_tag="BARCL_0076"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 16272372; Product type m : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB6"
/protein_id="YP_004158353.1"
/db_xref="GI:319898260"
/db_xref="GeneID:10138679"
/translation="MSDFKFTPFASVSSYILIPLNDVVDSTVSSLSSAVAAPLNLAAI
IFIFLYGYNVMTGHVALSMHSLLNNVVKIIIVTTMATNADVFNTYVKGIFFGNLANAI
GNAFNSNPVDADVFDYILLMANTRYQDFVAKAWLFDKIIVGLIGGLMFLAIIVFCTIG
FIIQMFAKITLVMVISLGPIFISLYLFNVTRRYADAWISTLVNFTVLQVLVMFLGTMM
CKITLYVFDSPYSSIYFLLPPVLVVSIVGSTLFQSLPTIASALSSGGPYHHAGTSAGS
QMFSIASNALNLAGRGLNLGGSAARHTASGASSAAAQAAQAAQMMRGGGGRGPF"
misc_feature complement(84788..85441)
/gene="virB6"
/locus_tag="BARCL_0076"
/note="TrbL/VirB6 plasmid conjugal transfer protein;
Region: TrbL; pfam04610"
/db_xref="CDD:191044"
gene complement(85576..86046)
/gene="virB5"
/locus_tag="BARCL_0077"
/db_xref="GeneID:10138676"
CDS complement(85576..86046)
/gene="virB5"
/locus_tag="BARCL_0077"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 14673074; Product type s : structure"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB5 ; 17-kDa
antigen"
/protein_id="YP_004158354.1"
/db_xref="GI:319898261"
/db_xref="GeneID:10138676"
/translation="MAAYISSKETNAMKKIMTMLFSSLCFISHAVSQDVEQYYQEAIN
PPSNTSPSKIAETIYASAITNEQKIKEINDKILTADKEAKKSLQIELAILQSKLQVDA
LKLQAFSIIKSENNKSKEAEREEEQQKQHASIQKTLQEQLEQAKSKVNIEPRSR"
gene complement(86007..88361)
/gene="virB4"
/locus_tag="BARCL_0078"
/db_xref="GeneID:10138673"
CDS complement(86007..88361)
/gene="virB4"
/locus_tag="BARCL_0078"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1c : Function experimentally demonstrated
in the studied genus; PubMedId : 12421311; Product type e
: enzyme"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB4"
/protein_id="YP_004158355.1"
/db_xref="GI:319898262"
/db_xref="GeneID:10138673"
/translation="MSVMKRESLPEEYIPYVRHVNQRVIALNSRCLMTVIAIEGINFD
TADITQLNSLHTQLNTLLKNIADERVALYSHIIRRRETIYPESQFFSSFATVLDEEYK
QKMISKDLYRNDLYLSILWNPAADKTEQLATFFHRLTQAKKTQSEPDFEAIRKLEELS
QDLIQGLESYEARLLSTYEHDGILFSEQSEFLHQLVGGRRERIPLTFGTIASTIYSDR
VLFGKEIIEIRHESNERFVGMFGWKEYPSKTRPGMTDGLLTAPFELILTQSFVFKSKA
VASAIMSRKQNQMINVADRASSQIGALDDALDDLESNRFVLGEHHLSLAVFSDHPQEL
AEHLSKARSYLTNGGAVIAREDLGLEAAWWAQLPGNFSYRARSGAISSRNFAALSPFH
SFPIGKLKGNVWGSAVALLQTQAGSPYYFNFHYGDVGNTFVCGPSGSGKTVIVNFLLA
QSQKYNPTIVFFDKDQGAEIFVRAGGGKYKPLKNGKPTNIAPLKGMEYTEKNKLFLQH
WVLKLVTTEGQTVTEQERQDVARAINSLESLPLEQRSLGALQLFFDNTSTEGIAMRLK
RWIKGNALGWVFDNDHDDLNLDAQFIGYDMTDFLDNEEIRRPLMMYLFNRILDLIDGR
RIIIVIDEFWKALEDDSFKAFTQDRLKTIRKQNGMMLFATQSPRDALNSTIAHTIIEQ
CPTQIFFPNQKANYNDYVENFKLTEREFELIQSELSRESRRFLIKQGQNSIVAELNLR
GMDNEIAVLSGTTRNIELLNQIIGEYGTNPDIWLPIFHQRRRTQ"
misc_feature complement(86019..88352)
/gene="virB4"
/locus_tag="BARCL_0078"
/note="type IV secretion/conjugal transfer ATPase, VirB4
family; Region: VirB4_CagE; TIGR00929"
/db_xref="CDD:200059"
misc_feature complement(87234..87845)
/gene="virB4"
/locus_tag="BARCL_0078"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
gene complement(88371..88679)
/gene="virB3"
/locus_tag="BARCL_0079"
/db_xref="GeneID:10138670"
CDS complement(88371..88679)
/gene="virB3"
/locus_tag="BARCL_0079"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311; Product type pm : membrane component"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB3"
/protein_id="YP_004158356.1"
/db_xref="GI:319898263"
/db_xref="GeneID:10138670"
/translation="MNEDTLFLACTRPAMFAGVTVEAMALNVMATSTLFIITSSFSMI
GLGIGLHFILREITKRDHNQFRVLFAWLNTRGKQKNLTRWGGGSTSPLRLIRTYKELN
"
misc_feature complement(88380..88673)
/gene="virB3"
/locus_tag="BARCL_0079"
/note="Type IV secretory pathway, VirB3-like protein;
Region: VirB3; cl01501"
/db_xref="CDD:186439"
gene complement(88680..89030)
/gene="virB2"
/locus_tag="BARCL_0080"
/db_xref="GeneID:10138667"
CDS complement(88680..89030)
/gene="virB2"
/locus_tag="BARCL_0080"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; PubMedId
: 12421311, 9573157; Product type s : structure"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB2"
/protein_id="YP_004158357.1"
/db_xref="GI:319898264"
/db_xref="GeneID:10138667"
/translation="MTNNISNNISKNIYISKNIYFIIITLFLTMLVMLNPAYAESSGA
ASGLGNIDSVLQAIVTMITGTTAKLIATICVAIVGIGWMYGVIDLRKAAYCVLGIGIV
FGASALVTLLKGTP"
misc_feature complement(88695..88955)
/gene="virB2"
/locus_tag="BARCL_0080"
/note="TrbC/VIRB2 family; Region: TrbC; pfam04956"
/db_xref="CDD:203130"
gene 89808..90656
/gene="dapD"
/locus_tag="BARCL_0081"
/db_xref="GeneID:10138664"
CDS 89808..90656
/gene="dapD"
/locus_tag="BARCL_0081"
/EC_number="2.3.1.117"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_004158358.1"
/db_xref="GI:319898265"
/db_xref="GeneID:10138664"
/translation="MTNLIQLEEIIEKAFNNRDSINSATKGEIRESVEHILNLLDKGE
IRVAQRQDDGQWHVHQWLKKAVLLSFRLHSMCIISGGANETHWWDKIPSKFSGWREVD
FKKANFRLVPGAIVRHSAYIAPNVILMPSFVNIGAYVGEGTMIDTWASVGSCAQIGRY
VHLSGGVGIGGVLEPLQAGPTIIEDHCFIGARSEIVEGCIIREGAVLGMGVFIGKSTK
IIDRITGEVFIGEVPAYSVIVPGSYCGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSI
NDLLRD"
misc_feature 89823..90650
/gene="dapD"
/locus_tag="BARCL_0081"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature 90126..90536
/gene="dapD"
/locus_tag="BARCL_0081"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(90132..90137,90144..90149,90195..90197,90201..90203,
90249..90257,90303..90305,90381..90383,90387..90389,
90441..90443,90522..90533)
/gene="dapD"
/locus_tag="BARCL_0081"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(90132..90134,90156..90158,90192..90194,90207..90209,
90243..90245,90264..90266,90291..90293,90297..90299,
90318..90320,90324..90329,90336..90338,90375..90383,
90396..90398,90429..90434)
/gene="dapD"
/locus_tag="BARCL_0081"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(90132..90134,90156..90158,90192..90194,90207..90209,
90243..90245,90264..90266,90324..90326)
/gene="dapD"
/locus_tag="BARCL_0081"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(90297..90302,90318..90320,90336..90338,90375..90383,
90396..90398,90429..90434)
/gene="dapD"
/locus_tag="BARCL_0081"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene complement(90707..92443)
/gene="lepA"
/locus_tag="BARCL_0082"
/db_xref="GeneID:10138061"
CDS complement(90707..92443)
/gene="lepA"
/locus_tag="BARCL_0082"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_004158359.1"
/db_xref="GI:319898266"
/db_xref="GeneID:10138061"
/translation="MADRLIQMTGGLETREMKEQVLDSMDIERERGITIKAQTVRLRY
KAKNGETYILNLIDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQAID
NSHELVVVLNKVDLPAAEPERVKEQIEDVIGIDTSKAVEISAKTGFGIADVLEEIITQ
LPPPHTGNVIDPLKVMLVDSWYDAYLGVIVLVRVIDGVLKKGQTIRMMGTGAKYPVER
VGVFTPKMVSVDKLGPGEIGFITASIKEVADTRIGDTITEDRRPCKKALPGFKPAQPV
VFCGIFPVDAADFENLRAAMGKLRLNDASFSFEMETSAALGFGFRCGFLGLLHLEIIQ
ERLEREFNLDLIATAPSVIYRMNMNDGSVKELHNPADMPDVVKVVSIEEPWIRATIMT
PNNYLGAILELCQERRGLQTGLSYVGTRAMVMYDLPLNEVIFDFYDRLKSISKGYASF
DYQVTDYSEGDLVKMSILVNGESIDALSMLVHRSIAEKRGRSMCEKLKDLIPQHMFQI
PIQAAIGGKIIARETIRALRKDVTAKCYGGDITRKRKLLEKQKAGKKRMRQFGKVEIP
QSAFIQALKMSK"
misc_feature complement(90710..92440)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature complement(91952..92440)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature complement(order(92063..92065,92075..92077,92183..92188,
92255..92260,92327..92332,92423..92428,92435..92437))
/gene="lepA"
/locus_tag="BARCL_0082"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature complement(92330..92365)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature complement(92342..92344)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature complement(92261..92272)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature complement(92210..92266)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature complement(order(92009..92017,92099..92101,92105..92110))
/gene="lepA"
/locus_tag="BARCL_0082"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature complement(92099..92110)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature complement(92009..92017)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature complement(91673..91927)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature complement(91061..91297)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature complement(90716..91039)
/gene="lepA"
/locus_tag="BARCL_0082"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene complement(92917..93660)
/gene="truA"
/locus_tag="BARCL_0083"
/db_xref="GeneID:10138261"
CDS complement(92917..93660)
/gene="truA"
/locus_tag="BARCL_0083"
/EC_number="4.2.1.70"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase A"
/protein_id="YP_004158360.1"
/db_xref="GI:319898267"
/db_xref="GeneID:10138261"
/translation="MARFKLTLEYDGSNYAGWQRQANLRTIQGSIEQAIFHFSGQKLT
ITTAGRTDAGVHATGQVAHIDFEKNWNTHTVRDALNAHLQKQGEDISILNVQNVPDNF
DARFCATKRHYLFKILNRRSPPVLNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFR
SAHCQAKSPIRTLERLDIQRKGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAED
LEAALHAKNRARCGVVAPPSGLYLIKVDY"
misc_feature complement(92920..93660)
/gene="truA"
/locus_tag="BARCL_0083"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:178798"
misc_feature complement(92920..93645)
/gene="truA"
/locus_tag="BARCL_0083"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature complement(order(93382..93396,93406..93414,93421..93423,
93634..93636))
/gene="truA"
/locus_tag="BARCL_0083"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature complement(order(93061..93063,93505..93516))
/gene="truA"
/locus_tag="BARCL_0083"
/note="active site"
/db_xref="CDD:211337"
gene complement(93662..94591)
/gene="fmt"
/locus_tag="BARCL_0084"
/db_xref="GeneID:10138632"
CDS complement(93662..94591)
/gene="fmt"
/locus_tag="BARCL_0084"
/EC_number="2.1.2.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Methionyl-tRNA formyltransferase"
/protein_id="YP_004158361.1"
/db_xref="GI:319898268"
/db_xref="GeneID:10138632"
/translation="MALRLSFMGTPSFSVPILYALLEAGHNIVAVYSQPPRPAGRRGL
KLSPSPVQIAAKEKSIPVFTPQTLKTTKEQIQFAELSVDVAVVVAYGLLLPKPILESP
RFGCFNAHASLLPRWRGAAPIQRAIMAGDKETGMMIMKMDEGLDTGPIALSRSIAITD
NMTAYELSDKLSHIGAKLIVEALSALEKGQLKFTPQSSEGVTYAAKIKKEETQIDWTK
SAKFIHKHICALSPVPGCWCIMNINGKHERVKILGSRLIEKHSLEIGRIESEQLIIHC
GQGCIEITHLQRSGGKLLDRATFLRGANISAVF"
misc_feature complement(93671..94585)
/gene="fmt"
/locus_tag="BARCL_0084"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature complement(93971..94585)
/gene="fmt"
/locus_tag="BARCL_0084"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature complement(order(94154..94159,94166..94171,94175..94177,
94235..94237,94259..94270,94295..94297,94310..94333,
94550..94555,94565..94567))
/gene="fmt"
/locus_tag="BARCL_0084"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature complement(order(93974..93976,94229..94237,94259..94264,
94268..94270,94319..94330,94460..94465,94469..94474,
94478..94480,94490..94492,94553..94555,94559..94564))
/gene="fmt"
/locus_tag="BARCL_0084"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature complement(order(94154..94159,94166..94171,94268..94270,
94295..94297,94310..94318,94322..94324,94331..94333))
/gene="fmt"
/locus_tag="BARCL_0084"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature complement(order(94154..94156,94262..94264,94268..94270))
/gene="fmt"
/locus_tag="BARCL_0084"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature complement(93707..93964)
/gene="fmt"
/locus_tag="BARCL_0084"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature complement(order(93710..93712,93716..93721,93725..93727,
93731..93733,93842..93844,93848..93850,93893..93895))
/gene="fmt"
/locus_tag="BARCL_0084"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene complement(94606..95121)
/gene="def"
/locus_tag="BARCL_0085"
/db_xref="GeneID:10138143"
CDS complement(94606..95121)
/gene="def"
/locus_tag="BARCL_0085"
/EC_number="3.5.1.88"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="polypeptide deformylase"
/protein_id="YP_004158362.1"
/db_xref="GI:319898269"
/db_xref="GeneID:10138143"
/translation="MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQG
IGLAAVQVGVPLRMLVLDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYA
EVERPKYLRICYRDREGKQAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIR
KFKKRAKKQNA"
misc_feature complement(94684..95106)
/gene="def"
/locus_tag="BARCL_0085"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature complement(order(94702..94704,94711..94716,94837..94845,
94969..94971,94984..94992))
/gene="def"
/locus_tag="BARCL_0085"
/note="active site"
/db_xref="CDD:29602"
misc_feature complement(order(94711..94713,94837..94839,94969..94971,
94984..94986))
/gene="def"
/locus_tag="BARCL_0085"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature complement(order(94702..94704,94714..94716,94840..94842))
/gene="def"
/locus_tag="BARCL_0085"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 95253..96422
/locus_tag="BARCL_0086"
/db_xref="GeneID:10138067"
CDS 95253..96422
/locus_tag="BARCL_0086"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158363.1"
/db_xref="GI:319898270"
/db_xref="GeneID:10138067"
/translation="MPFGWHFSQLVIFFVLIGVVLLIIMRNNRKKAIWERWEREVAER
SREAQMQMATLLQTQIEMQGRMQTMAEIFGQRQFELNQSICEQLNGMRTSLDQTLQVQ
TRSTYENLTRLQERLAVIDAAQNNIKSLTGQVVQLQAILNNKQTRGAFGQGRMEAIIA
DALPSSAYVFQAILSNGKRPDCLIHMPNKAPALVVDAKFPLEAWNAMREASSSQERQE
AERQFRNDMDVHIRDIKQKYLIPGETHDTAFLFVPSESIFATIYENFESLVQKANRAH
VIIVSPSLLMLSIQVVQTIMKDARMREQAHLIQSEVIKLMEDFERMDIRVRALQKHFY
KMGEDIEAILASSSKIMKRVNRIESLELQENDSISKPITTNTQPQSKTLHLDDKE"
misc_feature 95508..96374
/locus_tag="BARCL_0086"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:111535"
gene 96522..97112
/locus_tag="BARCL_0087"
/db_xref="GeneID:10137314"
CDS 96522..97112
/locus_tag="BARCL_0087"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158364.1"
/db_xref="GI:319898271"
/db_xref="GeneID:10137314"
/translation="MIRHFFLLGGCVLILGSCATKPPIHINNACAILAQKDSFFNNWR
KASKNAELLHGIPMPIILATIRVESSFRHNASPPRKKLFGFIPWKRRSTAYGYSQALE
STWNNYIRSTGKVFAWRTSFADTVDFIAWYHRQSVRRNGISPNDAYNLYLNYHMGHGA
YARNKGPSSAAIAKTAQRVEELSKLYDQQLKACGRR"
misc_feature 96522..97109
/locus_tag="BARCL_0087"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4764"
/db_xref="CDD:34377"
misc_feature 96696..>97010
/locus_tag="BARCL_0087"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(96723..96725,96822..96824,96915..96917,96981..96983)
/locus_tag="BARCL_0087"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature 96723..96725
/locus_tag="BARCL_0087"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
gene complement(97343..97594)
/locus_tag="BARCL_0088"
/db_xref="GeneID:10137315"
CDS complement(97343..97594)
/locus_tag="BARCL_0088"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158365.1"
/db_xref="GI:319898272"
/db_xref="GeneID:10137315"
/translation="MKECKQILQLQDTVFPDARQIAYLKEVCTDDLAKNFPDLPPMIP
GITIWALFGETGHPIILSDERSIALAGANEHELKIVTLQ"
misc_feature complement(97346..>97543)
/locus_tag="BARCL_0088"
/note="Uncharacterized small protein [Function unknown];
Region: COG5568"
/db_xref="CDD:35127"
gene 98055..98801
/gene="nth"
/locus_tag="BARCL_0089"
/db_xref="GeneID:10137316"
CDS 98055..98801
/gene="nth"
/locus_tag="BARCL_0089"
/EC_number="4.2.99.18"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="endonuclease III"
/protein_id="YP_004158366.1"
/db_xref="GI:319898273"
/db_xref="GeneID:10137316"
/translation="MTEKAIKSLKLKVYKDTDTVYGVDEIAEIFRRFSIQRPTPKSDL
SYTNVFTLLVAVVLSAQTTDASVNKVTKKLFCLADRPEKMITLGKEGIAHHIRAIGLW
RAKAQNIYELCCRLIDQYDGQVPDSREALMTLPGVGRKTANVVLNIAFGQPTMAVDTH
ILRLGNRLGLASGKTPEEVEEKLVKIIPDCYLQHAHHWLILHGRYICKARKVECTQCI
ISDLCKAAIKTNAIPAPLVEVKGNGAPVFF"
misc_feature 98127..98741
/gene="nth"
/locus_tag="BARCL_0089"
/note="Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair]; Region: Nth;
COG0177"
/db_xref="CDD:30526"
misc_feature 98202..98663
/gene="nth"
/locus_tag="BARCL_0089"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(98235..98243,98250..98252,98367..98369)
/gene="nth"
/locus_tag="BARCL_0089"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 98454..98477
/gene="nth"
/locus_tag="BARCL_0089"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(98484..98486,98640..98642,98652..98654)
/gene="nth"
/locus_tag="BARCL_0089"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 98526..98528
/gene="nth"
/locus_tag="BARCL_0089"
/note="active site"
/db_xref="CDD:28938"
gene 98944..99147
/gene="rpmI"
/locus_tag="BARCL_0090"
/db_xref="GeneID:10138347"
CDS 98944..99147
/gene="rpmI"
/locus_tag="BARCL_0090"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_004158367.1"
/db_xref="GI:319898274"
/db_xref="GeneID:10138347"
/translation="MPKMKTKSSAKKRFKVTATGKVKAAAAGKRHGMIKRSNKFIRDA
RGMMVLAEQDAKKVIQCYLPNGL"
misc_feature 98944..99141
/gene="rpmI"
/locus_tag="BARCL_0090"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:178913"
gene 99181..99582
/gene="rplT"
/locus_tag="BARCL_0091"
/db_xref="GeneID:10138522"
CDS 99181..99582
/gene="rplT"
/locus_tag="BARCL_0091"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_004158368.1"
/db_xref="GI:319898275"
/db_xref="GeneID:10138522"
/translation="MARVKRGVTAHAKHKKILKQAEGFYGRRKNTIRAAKTAVDRSKQ
YAYRDRKNRKRTFRALWIQRINAAVRVEGLTYGRFIDGLSKAGIKIDRKILSDIAINE
PTIFNALVASAKKALEYLKNTTPNAFESAVK"
misc_feature 99181..99525
/gene="rplT"
/locus_tag="BARCL_0091"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature 99196..99513
/gene="rplT"
/locus_tag="BARCL_0091"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature order(99196..99213,99217..99228,99241..99264,99268..99279,
99286..99291,99301..99306,99313..99357,99361..99369,
99376..99378,99388..99390,99406..99411,99418..99423,
99430..99432,99454..99462)
/gene="rplT"
/locus_tag="BARCL_0091"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature order(99286..99288,99298..99300,99307..99312,99316..99321,
99328..99330,99445..99456,99463..99465,99481..99486,
99502..99507)
/gene="rplT"
/locus_tag="BARCL_0091"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature order(99349..99351,99358..99363,99370..99372,99379..99384,
99388..99390,99460..99462,99469..99471,99478..99480)
/gene="rplT"
/locus_tag="BARCL_0091"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene 99675..100760
/gene="pheS"
/locus_tag="BARCL_0092"
/db_xref="GeneID:10138508"
CDS 99675..100760
/gene="pheS"
/locus_tag="BARCL_0092"
/EC_number="6.1.1.20"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase alpha chain"
/protein_id="YP_004158369.1"
/db_xref="GI:319898276"
/db_xref="GeneID:10138508"
/translation="MNDIEHLEQEICFALEAANDEQALEAVRIGALGKKGSISEKLKA
LGKMTADERHKVGPALNGLKKRVLKLWMQKRDALKHQAMAIRLSNETVDVTLPVRSSP
IERGRIHPISQVIDEIITIYTDMGFSIAEGPDIETDYYNFTALNFPEGHPAREMHDTF
FFGIDEMGNRKLLRTHTSPVQIRVMEKEQAPIRIIIPGKTYRMDSDATHSPMFHQVEG
LVIDKVSNIAHMMWLHETFCKSFFEVPSVKMRFRPSFFPFTEPSMEVDIQCDRSGLEV
KFGEGRDWLEILGCGMVHPHVLKNAGFDPTEYQGFAWGMGIDRIAMLKYGMPDLRAFF
DADVRWLNHYGFRCFDISLLFSGLKNL"
misc_feature 99675..100706
/gene="pheS"
/locus_tag="BARCL_0092"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:179046"
misc_feature 99720..99935
/gene="pheS"
/locus_tag="BARCL_0092"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature 99999..100691
/gene="pheS"
/locus_tag="BARCL_0092"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:29807"
misc_feature order(99999..100001,100008..100010,100017..100022,
100041..100043,100056..100061,100065..100073,
100122..100124,100137..100139,100149..100160,
100170..100175,100224..100226,100245..100253,
100263..100265,100269..100271,100275..100277,
100281..100283,100302..100304,100353..100361,
100365..100370,100431..100433,100452..100460,
100464..100466,100554..100559,100674..100676,
100680..100688)
/gene="pheS"
/locus_tag="BARCL_0092"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29807"
misc_feature 100053..100073
/gene="pheS"
/locus_tag="BARCL_0092"
/note="motif 1; other site"
/db_xref="CDD:29807"
misc_feature order(100137..100145,100200..100202,100206..100208,
100215..100217,100278..100280,100284..100286,
100296..100304,100311..100313,100317..100319,
100323..100325,100440..100442,100446..100451,
100530..100547,100611..100622,100629..100631,
100662..100664)
/gene="pheS"
/locus_tag="BARCL_0092"
/note="active site"
/db_xref="CDD:29807"
misc_feature 100275..100286
/gene="pheS"
/locus_tag="BARCL_0092"
/note="motif 2; other site"
/db_xref="CDD:29807"
misc_feature 100614..100631
/gene="pheS"
/locus_tag="BARCL_0092"
/note="motif 3; other site"
/db_xref="CDD:29807"
gene 100791..103205
/gene="pheT"
/locus_tag="BARCL_0093"
/db_xref="GeneID:10138401"
CDS 100791..103205
/gene="pheT"
/locus_tag="BARCL_0093"
/EC_number="6.1.1.20"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase beta chain"
/protein_id="YP_004158370.1"
/db_xref="GI:319898277"
/db_xref="GeneID:10138401"
/translation="MKFTLSWLKDHLETNASLDEICDKLTSIGLEVDHVEDRSCLTSF
LIAKILTAIKHPDADKLQILSVDIGSGAPIQVVCGASNARPGLVGVLALPGTYVPGLD
VTLSVGKIRGVESFGMMCSQAELGLSDEDCGIIELSESAPIGMSFVTYAGLDDPVINI
GLTPNRSDCTSVRGIARDLAAAGMGRLKELSLPQLSSSFETLVKVSLDYPQDSSLCLG
FSWCEIRNVQNCTSPQWMQQRLNAIGLRSVNALVDVTNYICFDLGRPLHVFDADKLKG
KLSVRLGREGEQFQALNGKVYNLGVENCVIADEEGVIAIAGIIGGERTGCDEKTCRVI
IESALWDSRNIAQTGRSLGLISDARYRFERGVDPAFMELGLKIAIELVLRLCGGEASM
TQVIGYQKPEIKEIVFPFSELKRLTNLEIEREEVFIILTHLGFGLEEKGNVVTVKVPT
WRLDVFGTADLVEEIMRIYGLDKIQPIPLKKIAEVKQQTLKFLQIYSHITRRILAYRG
MMEAITWSFISENQALAFGGGQAQLKLVNPIASDMSVMRPSLLPGLLVAAQRNIDRGF
SDFALFEVSNIYEGDTPDKQQNVASGIRCGTEKFEGAGRFWTGNAKAVDVFDAKADAL
AVLEACGMDSSKVQIEVGAPDWYHPGCSGVIKLGSKVILGFFGIFHPSTLEKLDVSGP
ICGFEIFLNQIPGPKKKVTKIRPPLSLSPFQMVRRDFAFVVDKEIASSLIVRAASGAD
KKLIHSVQVFDLFEDPSFGRDRKSVAVEVTIQPIERTLTDKDLEKLSLKIIENVTKIT
GAYLRC"
misc_feature 100791..103199
/gene="pheT"
/locus_tag="BARCL_0093"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:179078"
misc_feature 100920..101231
/gene="pheT"
/locus_tag="BARCL_0093"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:48399"
misc_feature order(100968..100970,101007..101009,101070..101072,
101112..101114,101133..101135,101142..101144)
/gene="pheT"
/locus_tag="BARCL_0093"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:48399"
misc_feature 101475..101951
/gene="pheT"
/locus_tag="BARCL_0093"
/note="B3/4 domain; Region: B3_4; pfam03483"
/db_xref="CDD:202662"
misc_feature 102000..102200
/gene="pheT"
/locus_tag="BARCL_0093"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature 102291..102869
/gene="pheT"
/locus_tag="BARCL_0093"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:29814"
misc_feature order(102294..102296,102303..102305,102315..102317,
102321..102323,102327..102335,102387..102398,
102429..102431,102471..102473,102501..102503,
102516..102518,102522..102524,102528..102530,
102546..102548,102654..102656)
/gene="pheT"
/locus_tag="BARCL_0093"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29814"
misc_feature 102315..102335
/gene="pheT"
/locus_tag="BARCL_0093"
/note="motif 1; other site"
/db_xref="CDD:29814"
misc_feature 102447..102458
/gene="pheT"
/locus_tag="BARCL_0093"
/note="motif 3; other site"
/db_xref="CDD:29814"
misc_feature 102522..102530
/gene="pheT"
/locus_tag="BARCL_0093"
/note="motif 2; other site"
/db_xref="CDD:29814"
misc_feature 102918..103199
/gene="pheT"
/locus_tag="BARCL_0093"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; smart00896"
/db_xref="CDD:197964"
gene 103381..104289
/gene="sitA"
/locus_tag="BARCL_0094"
/db_xref="GeneID:10138402"
CDS 103381..104289
/gene="sitA"
/locus_tag="BARCL_0094"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Iron transport protein, periplasmic-binding
protein"
/protein_id="YP_004158371.1"
/db_xref="GI:319898278"
/db_xref="GeneID:10138402"
/translation="MQLKAFFIACFLGIILLTPGIVLSAGKFKAVTTFTIIADMARNV
AGDVADVESITKPGAEIHEYQPTPRDLMRAQGANLILWNGLELELWFEKFFQNVKDVP
SVVVSEGIVTIKIGDGPFSGKPNPHAWMSPVSALIYVDNIRDAFVKYDPEHAAVYNKN
AEVYKQKIRLSIDPIKAELQTIPEDRRWLVTSEGAFSYLARDFGLKELYLWPINADQQ
GTPQQIKNVIDAVRKYHIPVVFSESTVSAAPAKQVARETGAKYGGVLYVDSLSDKDGE
VPTYIDLLRVTSARITKALSDEVKGR"
misc_feature 103411..104268
/gene="sitA"
/locus_tag="BARCL_0094"
/note="Metal binding protein PsaA. These proteins have
been shown to function as initial receptors in ABC
transport of Mn2+ and as surface adhesins in some
eubacterial species. They belong to the TroA superfamily
of periplasmic metal binding proteins that...; Region:
PsaA; cd01137"
/db_xref="CDD:29740"
misc_feature 103471..104265
/gene="sitA"
/locus_tag="BARCL_0094"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature order(103564..103566,103759..103761,103957..103959,
104182..104184)
/gene="sitA"
/locus_tag="BARCL_0094"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29740"
gene 104286..105116
/gene="sitB"
/locus_tag="BARCL_0095"
/db_xref="GeneID:10138571"
CDS 104286..105116
/gene="sitB"
/locus_tag="BARCL_0095"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="iron ABC transporter ATP-binding protein"
/protein_id="YP_004158372.1"
/db_xref="GI:319898279"
/db_xref="GeneID:10138571"
/translation="MTESGISAQDVSVTYRNGHTALREVSFESPMGSISALIGVNGSG
KSTLFKAIMGFVKPSKGKISILGLSVKKALKQNLIAYVPQSEDVDWNFPVLVEDVVLM
GRYGHMNFFRYARAQDYEAVRVALERVDMLPFSKRQIGELSGGQKKRVFLARALAQKA
KAILLDEPFTGVDVKTEDKIIALLKDLRKEGAIILVSTHNLDSVAEFCDRTILIKGTV
VASGLTEVVFTQKNLEQIFDGALRHHYVGFQNAQKNNVTTNDDKFLFHDCNQKLEHIL
"
misc_feature 104286..105083
/gene="sitB"
/locus_tag="BARCL_0095"
/note="manganese/iron transporter ATP-binding protein;
Provisional; Region: PRK15056"
/db_xref="CDD:185016"
misc_feature 104304..104951
/gene="sitB"
/locus_tag="BARCL_0095"
/note="ABC component of the metal-type transporters. This
family includes transporters involved in the uptake of
various metallic cations such as iron, manganese, and
zinc. The ATPases of this group of transporters are very
similar to members of...; Region: ABC_Metallic_Cations;
cd03235"
/db_xref="CDD:72994"
gene 105113..105976
/gene="sitC"
/locus_tag="BARCL_0096"
/db_xref="GeneID:10138572"
CDS 105113..105976
/gene="sitC"
/locus_tag="BARCL_0096"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Iron transport protein, inner membrane
component"
/protein_id="YP_004158373.1"
/db_xref="GI:319898280"
/db_xref="GeneID:10138572"
/translation="MIAWLLEPFTYQYMINAMWVSGLVGCVCAFLSAFLMLKGWSLIG
DALSHSIVPGVAGAYLLGLPFSFGAFFSGGLAAAAMLFLNYRTKLKEDTIIGLIFSSF
FAFGLFLKSLRPMSVNIDTIVLGNILAVSSSDIMQLACIGFFSLFILCIKWKDLLVFL
FDESHAHAIGLNITLLKILFFTLLAACTVAAMQTVGAFLVICLVITPGATAYLLTDRF
VNLLIIAVMIGTLTSILGVYMSYFLNAQTGGVVVLFQTFLFMVAFTFAPKHGYIAARL
RVRTAKRCSDI"
misc_feature 105152..105901
/gene="sitC"
/locus_tag="BARCL_0096"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(105206..105208,105218..105226,105560..105565,
105569..105577,105581..105586,105590..105607,
105611..105619,105743..105745,105764..105766)
/gene="sitC"
/locus_tag="BARCL_0096"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(105221..105223,105227..105229,105242..105244,
105383..105385,105389..105394,105401..105406,
105413..105418,105425..105427,105431..105433,
105437..105439,105470..105475,105482..105484,
105710..105712,105857..105859,105866..105871,
105878..105880,105887..105892,105899..105901)
/gene="sitC"
/locus_tag="BARCL_0096"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(105437..105439,105512..105514,105686..105688,
105698..105700,105833..105835)
/gene="sitC"
/locus_tag="BARCL_0096"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 105973..106878
/gene="sitD"
/locus_tag="BARCL_0097"
/db_xref="GeneID:10138573"
CDS 105973..106878
/gene="sitD"
/locus_tag="BARCL_0097"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Iron transport protein, inner membrane
component"
/protein_id="YP_004158374.1"
/db_xref="GI:319898281"
/db_xref="GeneID:10138573"
/translation="MIHQLLLPFQFSFMIKGMIITIVLAVPMAMLSCFLILKGWALLG
DAISHAVFPGVVIGYMATPWAMTFLSSIPFLWFHDVRAANVTMTLIACGAFLAGMICA
IATGFLGNNSRIKQDTIMGVVFSSMFGLGLVLATAIYSDLDLNHILFGNLLGVNWLDI
TQTAIIAMIVVMVLSIKWRDFMLYIFDSIQARAIGLQISVLHYILLTMISLTIVAALQ
AVGIILVISLLIAPGAIAYLITKRFFSMLLIAVFIAVCSSFLGIYLSLFIGSDSAATI
VLILTLIFIAVFISNFFVQSTVEEI"
misc_feature 106012..106836
/gene="sitD"
/locus_tag="BARCL_0097"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(106066..106068,106078..106086,106495..106500,
106504..106512,106516..106521,106525..106542,
106546..106554,106678..106680,106699..106701)
/gene="sitD"
/locus_tag="BARCL_0097"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(106081..106083,106087..106089,106102..106104,
106318..106320,106324..106329,106336..106341,
106348..106353,106360..106362,106369..106374,
106378..106380,106405..106410,106417..106419,
106645..106647,106792..106794,106801..106806,
106813..106815,106822..106827,106834..106836)
/gene="sitD"
/locus_tag="BARCL_0097"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(106378..106380,106447..106449,106621..106623,
106633..106635,106768..106770)
/gene="sitD"
/locus_tag="BARCL_0097"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene 107317..107640
/locus_tag="BARCL_0098"
/db_xref="GeneID:10138574"
CDS 107317..107640
/locus_tag="BARCL_0098"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158375.1"
/db_xref="GI:319898282"
/db_xref="GeneID:10138574"
/translation="MIVLGFIGVVLPIMPTVPFLLVASWCFARSSPRFHHWLHNHRIF
GSPIKQWEERKAIPPFIKIFAVVSMLGGFLSFLVLIHPALWFALLVATILLMISFYIV
TRPSS"
misc_feature 107317..107637
/locus_tag="BARCL_0098"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2832"
/db_xref="CDD:32660"
gene complement(107936..109240)
/gene="pncB"
/locus_tag="BARCL_0099"
/db_xref="GeneID:10137317"
CDS complement(107936..109240)
/gene="pncB"
/locus_tag="BARCL_0099"
/EC_number="2.4.2.11"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="nicotinate phosphoribosyltransferase"
/protein_id="YP_004158376.1"
/db_xref="GI:319898283"
/db_xref="GeneID:10137317"
/translation="MNCTDIARRVYNHTWKLDPIIRSLLDTDFYKLLMVQMIWGLYPD
VNVTFSLINRTKTILLANDIDEGELRAQLDHTLSLRFTKKEMIWLAGNTFYGRKRIFE
PDFLQWLENFQLPEYELTCKDGQYILRFDGPWAYSSMWEIPALAIISELRSRAAMKNL
GRFALDVLYARAKTKMWSKIERLKKLPDIKISDFGTRRRHSFLWQRWCVEALKEGIGN
SFTGTSNVLLAMDTDLEALGTNAHELPMVIAALTNNDNELRKASYQVLQDWNRYYGGN
LLIVLPDTFGTEAFLRNAPEWVADWTGFRLDSAPPIEGGERTIKWWQEKGKKPHEKLL
IFSDALDIDTIEKTYHHFHGRVHMSFGWGTNLTNDFENCAPQDIANLEAISLVCKVTH
ANGRPAVKLSDNPEKAIGDPQEIQRYLNFFGNEQRIAKSVKV"
misc_feature complement(107960..109210)
/gene="pncB"
/locus_tag="BARCL_0099"
/note="Nicotinic acid phosphoribosyltransferase [Coenzyme
metabolism]; Region: PncB; COG1488"
/db_xref="CDD:31677"
misc_feature complement(107948..109204)
/gene="pncB"
/locus_tag="BARCL_0099"
/note="nicotinate phosphoribosyltransferase; Provisional;
Region: PRK05321"
/db_xref="CDD:180013"
misc_feature complement(order(108140..108142,108149..108154,
108158..108160,108227..108232,108320..108322,
108569..108574,108647..108655))
/gene="pncB"
/locus_tag="BARCL_0099"
/note="active site"
/db_xref="CDD:29612"
gene complement(109370..117937)
/gene="chvB"
/locus_tag="BARCL_0100"
/db_xref="GeneID:10138411"
CDS complement(109370..117937)
/gene="chvB"
/locus_tag="BARCL_0100"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cyclic beta 1-2 glucan synthetase"
/protein_id="YP_004158377.1"
/db_xref="GI:319898284"
/db_xref="GeneID:10138411"
/translation="MVSILHRKKWFSSQKAKIHYLDETNSPIRSTSKSQEELYKLGHN
IASGQEIFLPEYKEENDFRRRLIENSKLILHVFRINDVAARNNETIAPSAQWLIDNHY
TIDKTIQQLCCNFSKSFIKQLPPYQQKKEIPRIFALAWLYVAHTDSRFLQETLTAMVN
GFQKVCTLKISELWALPFVVRMILIENVRRLSLRIEQARYMRSLANQVADKTALAKNE
TQLNILTLYEKLTSHSTFSAHLFYRLRGTSVDSTRALTWLEEQLYLHGSSTEMITADE
HTRQTTDGITMGNIIRALKTIDDVDWTAWFETVSCVDFILRENSDFSEIDSHSRNAYR
QVIETIAHRSPLSEVEIARKAVEMAQTCSQDVAHKNNFSVGWYLVDDGRSIFEEACGY
NPSFLTKWIQTYYRLKIGAIAIPVSLLILVLLFAIYTSLRISGLKTLMTLLFTALALF
PTMDAAFAFFNTVVSWFVPPNQLIGYEYKEGIPEDARTIVVVPTLITSRNDIDEQIRN
LEVHYLSNPQGAIHFALITDWADAPFAETQNDLDLLHYAQKGIAQLNHRYHRDTTPLF
FLLHRRRLYNAHEKCWMGWERKRGKLHELNLLLRGNKNTSFYTPDPHLPMDCRFVMTL
DSDTRLTPESVTKLVGKLNHPLNRPIFSKKNGAVVKGYSILQPRITPSLTAEEETSIL
QRVFSTNRGIDPYVFAVSDTYQDLLGEGTFTGKGLYNIDAFEQALNNKIKDNTVLSHD
LLEGSYARAALVSDVEIIEDYPTAYNVDIARHHRWIRGDWQLLPYLLNHHNTSLTTRW
KMQDNLRRSLTPLMWLIAATAGWSLLPLKIAIFWQIFLLLSPFIAPILGVLRTFIPSS
SDYSLRGQLQLISSSISSTILEMLLKITFIAHSAYFMTDAIIRALYRMMISKQYLLEW
KTSSATKSIPNSLSFYIITMWPAVFIGIIAIGLPLYFHNSTILIALPFGLLWFFSPLI
ACIVSKPKTFQDVLDISISSKDKKILRCIARRTWFYYTTFVNSQSNYLPPDNFQEEPE
PLVAQRTSPTNIGVYLLSIIAARDFGWISFEDAITRIKCTLSTLEKMEKFRGHLYNWY
ETDTLKPLLPTYVSTVDSGNLAGHLITLASALSEWAETPDTFLQSDLDSLFDVNNILE
ETLKEIPDNLNILYPLRQQIKEHIANFHHSVSALKTKSKTVTNITRLSITARNIVHLI
NELDKTIQTKESAHMLSWAKCLVETCEAHKHDITSDYDIKELCKKLNILSEKARQIAF
DMKFDFLEQTERQLLSIGYRVQENKLDESCYDLLASEARLASLFAIAKGDIKFKHWFH
LGRLLVPIGWKGALLSWSGSMFEYLMPSLVMHEPLGSILDQTNRLIIRHQIQYARKRR
LPWGISEAAFNARDHLMNYQYSNFGVPSLGLQRGLSRNTVIAPYASLLAAQYMPAQAI
ANLKQLRNLGALGTYGYYDSIDFTPSRVQKGKKYAIVRNYYAHHHGMSILAINNVIFE
GRIRDRFHRDPVIKAAQILLQERAPRQIPVIHTKINNPMRNNSKGFDDAPVRIITNPL
LKPRATLLLSNGCYSIMMTANGSGYSRWHNYAITRFIPDASEDQQGTLFFIKDTHNKR
WWSITNEPTRVAEEEVVSIFTDEKAEYTKTVDGLKSTLECLIASEGDGEGRRIQLINT
TNKDRIIEITSYGELALATIDNDCAHPIFSRMFIETEILDSGGTILAKRRKRSPHDPN
IHIAHFVTDPSGIIPEAEAETDRRLFISRGRSIHHPIAFDQNTYFKGNQGCVLDPIIS
IRSCVKVPAHGKAELIFWTFAADSKETLQHYIKYYRQPDMFQQELSKAWTHSQVSLYQ
NNISPREAITYQKYITPLIYPDRKWRLSPEILAKTLGKQSDLWPMSISGDYPICLLRL
DNETYITVLRELLKAYEYWRMRGLIVDIVILNEQTFSYLQDTQRAIEWACESYRHRTK
EMNGQHHIFTLQRNQISEQSFKTLLASARIILHAQNGSLSEQLKHIENIDSDLVIRSH
NQESNNKLNYKKYNKRTQKTPRTKQNLFSSIALADQQKASSFPIQREDLQYWNGYGGF
NQHNHYVVRLNGCQTTPHPWINIIANHSFGFHVSAEGTIFTWANNSRDYQLTPWSNDP
ITNRPGEALYLVDRFSLKCFSPVSAVECDDSVIYEACHGFGFSTFKSTHSDIALELTH
TLNREKPIRFSRLIIKNKGKKSHSLRLYNYAEWVLGNIRTKYAPFIIPHYDPKRGAHF
IQNPYHIEKSQQVTFLSASEMPTSFTTDRTEFIGTTGTVQHPQAIRKAEALSNTVEPG
RDPCSALVYDIDLQPGQAKEIIFYLGSAENIEKAEKLLDQVRKDDFKVLLAQQKQQWN
DFVSPLQVKTPDPSFDIMVNHWLPYQIYACRLMARSAFYQASGAFGFRDQLQDSLSLL
LLEPQLAREHLLNAAAHQFPEGDVQHWWLPDTNAGVRTFISDDVVWLAYGTALYVNTT
GDDAFLDTPVPFIEGPPLAAGQHDSYFQPTQSSNITTLYEHCALALDLAIKRCGPHNL
PLILGGDWNDGMNLVGIEGKGESIWLGWFLGTTLQAFIPLAKNRSDHSRAKAWSAYLK
RLTKALEKNGWDGAWYRRGYFDDATPLGSKINAECQIDAIAQSWAVISKMASSKRQKQ
AMASLLDHLYDEKTGLIHLFWPPFNKSTLEPGYIKGYPPGIRENGGQYTHGAIWSILA
LAEIGEEDKAYTLFSRINPINHGQNPEIYRVEPYVMAADIYTVEPYRGQGGWTWYTGS
AGWFYRAATQTILGLHLQAGKLFLRPHLPSSWPEYEAKMKFHNAVYKIKVRRANKNML
NIDGKEYIKIDRGIKLKKQATMKLYIP"
misc_feature complement(<114653..114934)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="Protein of unknown function (DUF3131); Region:
DUF3131; pfam11329"
/db_xref="CDD:204628"
misc_feature complement(113423..114067)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="Putative glucoamylase; Region: Glycoamylase;
pfam10091"
/db_xref="CDD:150731"
misc_feature complement(112463..113449)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="Second GH94N domain of cyclic beta 1-2 glucan
synthetase and similar domains; Region:
GH94N_ChvB_NdvB_2_like; cd11753"
/db_xref="CDD:213069"
misc_feature complement(109463..112708)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="Cellobiose phosphorylase [Carbohydrate transport
and metabolism]; Region: COG3459"
/db_xref="CDD:33262"
misc_feature complement(110894..111748)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="First GH94N domain of cyclic beta 1-2 glucan
synthetase and similar domains; Region:
GH94N_ChvB_NdvB_1_like; cd11756"
/db_xref="CDD:213072"
misc_feature complement(<110018..>110296)
/gene="chvB"
/locus_tag="BARCL_0100"
/note="Bacterial alpha-L-rhamnosidase; Region:
Bac_rhamnosid; cl01801"
/db_xref="CDD:207482"
gene complement(118134..119834)
/gene="rpsA"
/locus_tag="BARCL_0101"
/db_xref="GeneID:10138026"
CDS complement(118134..119834)
/gene="rpsA"
/locus_tag="BARCL_0101"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S1"
/protein_id="YP_004158378.1"
/db_xref="GI:319898285"
/db_xref="GeneID:10138026"
/translation="MSQYNPTTADFETLLMESFQTNDLNEGSVVKGHIIAIEKDMAII
DAGLKVEGRIPLKEFGSKGKDGSLQIGDEVEVYIERIENALGEVVLSREKARREESWI
RLEEKFNAGTRVEGVIFNQVKGGFTVDLDGAIAFLPRSQVDIRPIRDAAPLMHNSQLF
EILKMDRRRGNIVVSRRTVLEENRAEQRLEIVQNLEENQIVEGIVKNITDYGAFVDLG
GIDGLLHVTDMAWRRINHPSEILTIGQNIKVQIIRINQETHRISLGMKQLENDPWDSI
NTKYPIGKKITGSVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKLLSTSQEV
EVVVLEIDSSKRRISLGLKQTSENPWVAFANKFPVNSKITGEVKNKTEFGLFIGLEGD
VDGMVHLSDLDWNRPGEQVIDTYNKGDTVQAVVLDVDVEKERISLGIKQLSSDKVKEA
SASGELRKGAIVTCEVIGINENGVDVKLIEHDLEVTIRRTDLTRDRDEQRPERFSIGQ
KVDAQVTAFDKKTRKLSVSIKALEIKEEKEAVAQYGSTDSGASLGDILGAALKKQEQD
"
misc_feature complement(118146..119822)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="30S ribosomal protein S1; Reviewed; Region: rpsA;
PRK06299"
/db_xref="CDD:180520"
misc_feature complement(119556..119756)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec1_hs1; cd05687"
/db_xref="CDD:88442"
misc_feature complement(order(119670..119672,119676..119678,
119706..119708,119730..119732))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88442"
misc_feature complement(119304..119504)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec2_hs2; cd04465"
/db_xref="CDD:88430"
misc_feature complement(order(119421..119423,119427..119429,
119454..119456,119478..119480))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88430"
misc_feature complement(119043..119246)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec3; cd05688"
/db_xref="CDD:88443"
misc_feature complement(order(119160..119162,119166..119168,
119193..119195,119217..119219))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88443"
misc_feature complement(118782..118997)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec4; cd05689"
/db_xref="CDD:88444"
misc_feature complement(order(118902..118904,118908..118910,
118938..118940,118962..118964))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88444"
misc_feature complement(118521..118724)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec5; cd05690"
/db_xref="CDD:88445"
misc_feature complement(order(118641..118643,118647..118649,
118677..118679,118701..118703))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88445"
misc_feature complement(118254..118460)
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature complement(order(118371..118373,118377..118379,
118410..118412,118434..118436))
/gene="rpsA"
/locus_tag="BARCL_0101"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
gene complement(119969..120616)
/gene="cmk"
/locus_tag="BARCL_0102"
/db_xref="GeneID:10138531"
CDS complement(119969..120616)
/gene="cmk"
/locus_tag="BARCL_0102"
/EC_number="2.7.4.14"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytidylate kinase"
/protein_id="YP_004158379.1"
/db_xref="GI:319898286"
/db_xref="GeneID:10138531"
/translation="MKPFIIAIDGPAASGKGTLANQIAAHYHLHHLDTGLTYRSVGYF
LLKQNLALDDEINAVAYARKLDLNSLNPDLLTSPDISEAASKIATIPAVREILVSKQR
DFSQKLPGSVLDGRDIGTVVCPHADIKFYVLANIQTRAKRRYQEILKKGGQIDYHEIL
ANLEQRDRRDLTRKHSPLKPAKNAHLLDTSELSIKEVLETACAFIDPLIKNHAVK"
misc_feature complement(119987..120616)
/gene="cmk"
/locus_tag="BARCL_0102"
/note="cytidylate kinase; Provisional; Region: cmk;
PRK00023"
/db_xref="CDD:178800"
misc_feature complement(120047..120604)
/gene="cmk"
/locus_tag="BARCL_0102"
/note="Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate (CMP)
to produce cytidine diphosphate (CDP), using ATP as the
preferred phosphoryl donor; Region: CMPK; cd02020"
/db_xref="CDD:73296"
misc_feature complement(order(120098..120100,120266..120271,
120335..120337))
/gene="cmk"
/locus_tag="BARCL_0102"
/note="CMP-binding site; other site"
/db_xref="CDD:73296"
misc_feature complement(order(120107..120109,120119..120121))
/gene="cmk"
/locus_tag="BARCL_0102"
/note="The sites determining sugar specificity; other
site"
/db_xref="CDD:73296"
gene complement(120613..121941)
/gene="aroA"
/locus_tag="BARCL_0103"
/db_xref="GeneID:10138032"
CDS complement(120613..121941)
/gene="aroA"
/locus_tag="BARCL_0103"
/EC_number="2.5.1.19"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-phosphoshikimate 1-carboxyvinyltransferase"
/protein_id="YP_004158380.1"
/db_xref="GI:319898287"
/db_xref="GeneID:10138032"
/translation="MYKAIPATAKKSTNLSGTIKIPGDKSISHRAVILGGLAHGESHI
YGLLESDDVLRTVTIMQAMGAQCYKKNNLWIIRGTGNGCLLQARTPLNFGNSGTSARL
IMGLVGSYHMKTTFLGDASLSRRPMEHILNPLRLMGVEIEPTLGNHLPLTLYGPKMAN
PIRYRVPMASAQVKSAVLLAGLNTAGTTTVIEPTLTRDHTEKMLKAFGAELDIETDKE
GARFISLKGQPHLTGQIINVPGDPSSAAFPIIAALLVEDSDITLENVLINDSRMGFIQ
TLWEMGAKIELLNQREIGIENVADIRVRSSELKGVTIPKERAPSMIDEYPALAITAAF
ANGTTVMSGIKELRIKESNRLSALAEGFKINHVHCEKGNDFLIVHGKNSIKGLGGGYV
TTHLDHRIAMCFLIFGLVSEKPVIIDDKRMIATSFPEFIPLMRQLGGQIY"
misc_feature complement(120631..121899)
/gene="aroA"
/locus_tag="BARCL_0103"
/note="EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP)
to form...; Region: EPSP_synthase; cd01556"
/db_xref="CDD:30129"
misc_feature complement(120622..121893)
/gene="aroA"
/locus_tag="BARCL_0103"
/note="3-phosphoshikimate 1-carboxyvinyltransferase;
Region: aroA; TIGR01356"
/db_xref="CDD:162316"
misc_feature complement(order(121219..121230,121870..121881))
/gene="aroA"
/locus_tag="BARCL_0103"
/note="hinge; other site"
/db_xref="CDD:30129"
misc_feature complement(order(120667..120669,120745..120750,
120880..120882,120889..120894,120904..120906,
120973..120975,121354..121356,121363..121365,
121426..121434,121567..121569,121648..121653,
121657..121659,121852..121854,121864..121869))
/gene="aroA"
/locus_tag="BARCL_0103"
/note="active site"
/db_xref="CDD:30129"
gene 122127..122498
/locus_tag="BARCL_0104"
/db_xref="GeneID:10137987"
CDS 122127..122498
/locus_tag="BARCL_0104"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158381.1"
/db_xref="GI:319898288"
/db_xref="GeneID:10137987"
/translation="MAKPELGTKRVDPETGKKFYDLNRDPIVSPYTGLSYPRSYFEVA
AVEASNEEEVDTEELDTALEKSAFMLLEEEVDVSKDDELPDLDDGDVDLGDDTFLSHD
ESDEDDDVADILGNGVSNDDV"
misc_feature 122127..>122363
/locus_tag="BARCL_0104"
/note="Protein of unknown function (FYDLN_acid); Region:
FYDLN_acid; pfam09538"
/db_xref="CDD:204267"
misc_feature 122127..>122354
/locus_tag="BARCL_0104"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4530"
/db_xref="CDD:34179"
gene 122603..122679
/locus_tag="BARCL_t01"
/db_xref="GeneID:10137318"
tRNA 122603..122679
/locus_tag="BARCL_t01"
/product="tRNA-Ala"
/db_xref="GeneID:10137318"
gene 122604..122679
/locus_tag="BARCL_tRNA1"
/db_xref="GeneID:10138706"
tRNA 122604..122679
/locus_tag="BARCL_tRNA1"
/product="tRNA-Ala"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138706"
gene complement(123257..125992)
/gene="mutS"
/locus_tag="BARCL_0105"
/db_xref="GeneID:10137911"
CDS complement(123257..125992)
/gene="mutS"
/locus_tag="BARCL_0105"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutS"
/protein_id="YP_004158382.1"
/db_xref="GI:319898289"
/db_xref="GeneID:10137911"
/translation="MEKETEHKNDSLQHPTIPPNTHQERLTPMMEQYIEIKALNSDSL
LFYRMGDFYELFFNDAIEAAQALGITLTTRGKHLGKDIPMCGVPVHSADDYLQKLIAC
GYRVAVCEQIEDPAEAKKRGSKSVVQRDVVRLITPGTITEEKLLDPTRANYLMTLTRT
IISNREEYALSWIDISTGIFRVTESRHENLLTDIMRVDPQEVIVADSLFHDKSQKALF
NVLGHIISPQPENLFDTTTAERDICHYFKLSTLEGIADYSRSELSAIAAAIRYIEKTQ
ITHRPPLMRPERQNESTTLFIDTATRFSLELIRTTSGQRDGSLLKAIDRTVTGGGSRL
LVDRLISPLTNPTAIDKRLDSIDFFLRNPPLAEAIKLILKGGPDMPRAVSRLALGRGG
PRDMGTIQRGFEIINEINQILNNELLPQEINDVREVFSHLPTTLHFHLEQALADDLPL
FKRDGGFIRLNYHQELDEMRNLRDESRCVIARLQAQYAQETDIKTLKIKHNNILGYFI
EVTNLQASALTNTPQAKARFIHRQTMANAMRFTTTELTELESRIAHAANHALTLELEI
FDTLVYEITEQIDFIRQAAEALAILDVSVALAHLAEEQGYCRPKIDNSLAFHITAGRH
PVVEQALRKQAAEPFVANDCDLSARNQHPNADIWLLTGPNMGGKSTFLRQNALIAIMA
QMGSFVPATSAHIGIVDRLFSRVGASDDLARGRSTFMMEMVETATILNHASSHSLVIL
DEIGRGTSTFDGLSIAWATVEHLHEINRCRAILATHFHEMTALTKKLNRLHNVTIKVK
NWNSDVIFLHEVTKGTADRSYGVQVAKLAGLPATVISRATDVLRQLEQGEMSGKGHKL
IDNLPLFPLKLTSFTNEKNEKCCAIKDAFKNIDPDELSPKAALEELYRLKQLDKQ"
misc_feature complement(123269..125932)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="DNA mismatch repair protein MutS; Provisional;
Region: PRK05399"
/db_xref="CDD:180056"
misc_feature complement(125564..125914)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="MutS domain I; Region: MutS_I; pfam01624"
/db_xref="CDD:144998"
misc_feature complement(125144..125539)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="MutS domain II; Region: MutS_II; pfam05188"
/db_xref="CDD:147397"
misc_feature complement(124328..124612)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="MutS family domain IV; Region: MutS_IV; pfam05190"
/db_xref="CDD:203196"
misc_feature complement(123470..124141)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired and
unpaired bases embedded in duplex DNA and activating endo-
and exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal...; Region: ABC_MutS1;
cd03284"
/db_xref="CDD:73043"
misc_feature complement(123986..124009)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73043"
misc_feature complement(order(123665..123667,123767..123772,
123875..123877,123983..123991,123995..124000))
/gene="mutS"
/locus_tag="BARCL_0105"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73043"
misc_feature complement(123875..123886)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="Q-loop/lid; other site"
/db_xref="CDD:73043"
misc_feature complement(123821..123862)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73043"
misc_feature complement(123767..123784)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="Walker B; other site"
/db_xref="CDD:73043"
misc_feature complement(123749..123760)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="D-loop; other site"
/db_xref="CDD:73043"
misc_feature complement(123659..123679)
/gene="mutS"
/locus_tag="BARCL_0105"
/note="H-loop/switch region; other site"
/db_xref="CDD:73043"
gene 126601..126789
/gene="maeB"
/locus_tag="BARCL_0106"
/pseudo
/db_xref="GeneID:10138333"
misc_feature 126601..126789
/gene="maeB"
/locus_tag="BARCL_0106"
/inference="ab initio prediction:AMIGene:2.0"
/note="NADP-dependent malic enzyme"
/pseudo
/db_xref="PSEUDO:CBI75787.1"
gene 126878..127027
/gene="maeB"
/locus_tag="BARCL_0107"
/pseudo
/db_xref="GeneID:10138292"
misc_feature 126878..127027
/gene="maeB"
/locus_tag="BARCL_0107"
/inference="ab initio prediction:AMIGene:2.0"
/note="NADP-dependent malic enzyme"
/pseudo
/db_xref="PSEUDO:CBI75788.1"
gene 127048..127176
/locus_tag="BARCL_0108"
/db_xref="GeneID:10138293"
CDS 127048..127176
/locus_tag="BARCL_0108"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158383.1"
/db_xref="GI:319898290"
/db_xref="GeneID:10138293"
/translation="MAPQSIIFAMDNPDPKITSEEIAEIGDDAIIVNRSIRLSQSN"
misc_feature <127048..>127098
/locus_tag="BARCL_0108"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 127247..127375
/gene="maeB"
/locus_tag="BARCL_0109"
/pseudo
/db_xref="GeneID:10137319"
misc_feature 127247..127375
/gene="maeB"
/locus_tag="BARCL_0109"
/inference="ab initio prediction:AMIGene:2.0"
/note="NADP-dependent malic enzyme"
/pseudo
/db_xref="PSEUDO:CBI75790.1"
gene 127422..127481
/locus_tag="BARCL_0110"
/db_xref="GeneID:10138294"
CDS 127422..127481
/locus_tag="BARCL_0110"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158384.1"
/db_xref="GI:319898291"
/db_xref="GeneID:10138294"
/translation="METSVARKHIHDLKRMNVI"
gene 127788..127952
/gene="maeB"
/locus_tag="BARCL_0111"
/pseudo
/db_xref="GeneID:10137320"
misc_feature 127788..127952
/gene="maeB"
/locus_tag="BARCL_0111"
/inference="ab initio prediction:AMIGene:2.0"
/note="NADP-dependent malic enzyme"
/pseudo
/db_xref="PSEUDO:CBI75792.1"
gene 128000..128248
/gene="maeB"
/locus_tag="BARCL_0112"
/pseudo
/db_xref="GeneID:10138295"
misc_feature 128000..128248
/gene="maeB"
/locus_tag="BARCL_0112"
/inference="ab initio prediction:AMIGene:2.0"
/note="NADP-dependent malic enzyme"
/pseudo
/db_xref="PSEUDO:CBI75793.1"
gene 128169..128366
/locus_tag="BARCL_0113"
/db_xref="GeneID:10138296"
CDS 128169..128366
/locus_tag="BARCL_0113"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158385.1"
/db_xref="GI:319898292"
/db_xref="GeneID:10138296"
/translation="MFRELFIFYVNIKLTLNLMKKGEISADVTLNSKLMQQCSFMGLT
KPVNILVMSEYHSSSISSKML"
misc_feature <128232..128363
/locus_tag="BARCL_0113"
/note="bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed; Region:
PRK07232"
/db_xref="CDD:180898"
gene complement(128584..129060)
/gene="secB"
/locus_tag="BARCL_0114"
/db_xref="GeneID:10137321"
CDS complement(128584..129060)
/gene="secB"
/locus_tag="BARCL_0114"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="protein-export protein SecB"
/protein_id="YP_004158386.1"
/db_xref="GI:319898293"
/db_xref="GeneID:10137321"
/translation="MAEGEMHNNSGEPVFAVLTQYLKDFSFENPNAPRSLRPREKAPQ
IDVNINVNANPIGDDNYDVILSLSVKTKDDTEMLFHVELIYGGIFHIKNIPQEHVMPL
VFIECPRLLFPFARQIISDATQNGGFPPLWIDPIDFATMFQKRVAEEQKNNQTQPS"
misc_feature complement(128590..129060)
/gene="secB"
/locus_tag="BARCL_0114"
/note="preprotein translocase subunit SecB; Validated;
Region: PRK05751"
/db_xref="CDD:180234"
misc_feature complement(order(128815..128817,128821..128823,
128977..128979,128989..128991))
/gene="secB"
/locus_tag="BARCL_0114"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature complement(order(128806..128808,128812..128814,
128818..128820,128824..128826))
/gene="secB"
/locus_tag="BARCL_0114"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene complement(129177..129665)
/locus_tag="BARCL_0115"
/db_xref="GeneID:10138563"
CDS complement(129177..129665)
/locus_tag="BARCL_0115"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="FxsA cytoplasmic membrane protein"
/protein_id="YP_004158387.1"
/db_xref="GI:319898294"
/db_xref="GeneID:10138563"
/translation="MTKFYHIKSRFFLIIVLSALFFEIAGFIIVGKEIGILATLSLIL
LTMISGIVLLRIKGISLIKNIQNKLIQRHILEYYIANDALTVLGAVLLILPGFISDIC
GILLLIKPVRTFSWNLFLSLINKTNSNTQNESEKIIELNAEDYQSYNTEKSPWYKNND
NH"
misc_feature complement(129282..129635)
/locus_tag="BARCL_0115"
/note="FxsA cytoplasmic membrane protein; Region: FxsA;
pfam04186"
/db_xref="CDD:202921"
gene 129839..130531
/locus_tag="BARCL_0116"
/db_xref="GeneID:10137322"
CDS 129839..130531
/locus_tag="BARCL_0116"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158388.1"
/db_xref="GI:319898295"
/db_xref="GeneID:10137322"
/translation="MEFDVVLIIALIVVVVVFVQLRNVLGKRIGFEKPPFDSYSGYPK
KQIEVETTDNIVSLPDQSSSQKSDFSEIDAIAPEGSELNVSLRTIRQFDPSFSPRFFM
NGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIEQREKNNERIQFTFVGINRI
EFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAIIEIRDIWTFVRNTTSQS
PNWKLFATEDEN"
misc_feature 130094..130519
/locus_tag="BARCL_0116"
/note="Tim44-like domain; Region: Tim44; pfam04280"
/db_xref="CDD:202957"
gene 130589..131155
/locus_tag="BARCL_0117"
/db_xref="GeneID:10137323"
CDS 130589..131155
/locus_tag="BARCL_0117"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158389.1"
/db_xref="GI:319898296"
/db_xref="GeneID:10137323"
/translation="MVKDKGKKNPLILQDYFLWERVCRTAVPLYDRFNRLMRENVENT
KLQAIQVLSSSQESPQKQKTTVVKGQEKGIMKAEKMRCFDRTVHRKIAKGLYRIEARI
DLHGLIQDEAYRCLKEFLQSSHQRGLRYVLVITGKGRSHGSDGVLCQFVPYWLSTPIF
QCYVHAFEQAVHRHGGSGALYIQLRRFL"
misc_feature 130604..131146
/locus_tag="BARCL_0117"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2840"
/db_xref="CDD:32668"
misc_feature 130892..131143
/locus_tag="BARCL_0117"
/note="Smr domain; Region: Smr; pfam01713"
/db_xref="CDD:201932"
gene complement(131211..131885)
/locus_tag="BARCL_0118"
/pseudo
/db_xref="GeneID:10137324"
misc_feature complement(131211..131885)
/locus_tag="BARCL_0118"
/inference="ab initio prediction:AMIGene:2.0"
/note="effector protein;Evidence 7 : Gene remnant; Product
type f : factor"
/pseudo
/db_xref="PSEUDO:CBI75799.1"
gene complement(132802..133803)
/locus_tag="BARCL_0119"
/db_xref="GeneID:10137325"
CDS complement(132802..133803)
/locus_tag="BARCL_0119"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock protein hsp33"
/protein_id="YP_004158390.1"
/db_xref="GI:319898297"
/db_xref="GeneID:10137325"
/translation="MNKESKDQIYLNNFYQNRDDTVVPFQVEELDIRGRAVKLGESLN
SILTRHQYPDPVSHLLAEALVVTVLLGTSLKFEGKFILQTHSDGPVNMLVCDFVPPSN
LRGYARFDKERLKQATANDQTSSEILLGKGTLAFTIDQGPYTQRYQGIVALDGSNFQE
VSRTYFNQSEQIPTDLRLAVSMLINLDQKGKIQKSWRAGGFLTQLLPQASPDHVPYQT
NTKSEKTKTCIQLENQWQEVKALTATIDSTELTDPQVSTERLLFRLFHEKDVKVFQTS
SIIDQCSCSRKKIKQILKNFSVEERTQTIENQQTSVTCEFCSTIYHFKPEELFEVKA"
misc_feature complement(132820..133755)
/locus_tag="BARCL_0119"
/note="Disulfide bond chaperones of the HSP33 family
[Posttranslational modification, protein turnover,
chaperones]; Region: COG1281"
/db_xref="CDD:31472"
misc_feature complement(132832..133740)
/locus_tag="BARCL_0119"
/note="Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat...; Region: Hsp33;
cd00498"
/db_xref="CDD:29605"
misc_feature complement(order(132958..132960,133192..133194,
133291..133299,133309..133311,133705..133707))
/locus_tag="BARCL_0119"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29605"
misc_feature complement(order(133183..133194,133204..133206,
133210..133212,133705..133707))
/locus_tag="BARCL_0119"
/note="domain crossover interface; other site"
/db_xref="CDD:29605"
misc_feature complement(order(132853..132855,132862..132864,
132952..132954,132958..132960))
/locus_tag="BARCL_0119"
/note="redox-dependent activation switch; other site"
/db_xref="CDD:29605"
gene complement(133839..134771)
/gene="argF"
/locus_tag="BARCL_0120"
/db_xref="GeneID:10137326"
CDS complement(133839..134771)
/gene="argF"
/locus_tag="BARCL_0120"
/EC_number="2.1.3.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ornithine carbamoyltransferase"
/protein_id="YP_004158391.1"
/db_xref="GI:319898298"
/db_xref="GeneID:10137326"
/translation="MTNALRHFTDISILTPQQARALIDYAKILKTAFKAGESSKPFAG
KTLAMIFEKPSTRTRVSFDLGMRQLGGETIMLTGSEMQLGNSETIADTARVLSRFVEI
IILRTTAHHRMLELAQYAQIPIINALTDDTHPCQILADILTYEEHRGPIVGKTFAWMG
DGNNVLHSLIEATAIFNFHLHIATPQGSEPQEKYVNWARERGAHIMLTQNPQKAAENV
DCIITDTWVSMGQEFRARGRSIFQPYQVNEALMAYAKPDALFMHCLPAHRGEEVVDAV
IDGPNSVVFDEAENRLHAQKAILSWCLQDAFFLI"
misc_feature complement(133863..134768)
/gene="argF"
/locus_tag="BARCL_0120"
/note="ornithine carbamoyltransferase; Provisional;
Region: PRK00779"
/db_xref="CDD:179122"
misc_feature complement(134331..134756)
/gene="argF"
/locus_tag="BARCL_0120"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature complement(133866..134315)
/gene="argF"
/locus_tag="BARCL_0120"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene complement(134776..135981)
/gene="argD"
/locus_tag="BARCL_0121"
/db_xref="GeneID:10137982"
CDS complement(134776..135981)
/gene="argD"
/locus_tag="BARCL_0121"
/EC_number="2.6.1.11"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="acetylornithine aminotransferase"
/protein_id="YP_004158392.1"
/db_xref="GI:319898299"
/db_xref="GeneID:10137982"
/translation="MKTTLPQSLYNNFSRRNLHFTQGKGVWLISDKGESYLDFTSGIA
VNVLGYTHPKLVDAIKTQAEKLWHVSNLFESPEQESLATRLCANSFADKVFFCNSGAE
ALECAFKTARRYHYTSGQPTRFEIITFEGAFHGRTLATIAASGQKKYLEGFGPKVCGF
IQVPFDDEKALRNAINKNTAAILIEPIQGEGGLRTVPYETLKLLRKLCDENQLLLILD
EVQTGIGRTGKLFAYEWHDITPDILTLAKGLGGGFPLGACLATEKAAKSMTPGTHGTT
FGGNLLGIAVSNNVLDILLEPGFLDHVQHMSSKLKQGLLNIFNTYPDIICAIQGIGLM
MGMQCVIPKNEVITALDNERILSVGAGHNIVRLLPPLIITEEEMYEGLRRIEKAIAHL
SQTNKKRQV"
misc_feature complement(134806..135963)
/gene="argD"
/locus_tag="BARCL_0121"
/note="acetylornithine transaminase protein; Provisional;
Region: argD; PRK01278"
/db_xref="CDD:179270"
misc_feature complement(134815..135954)
/gene="argD"
/locus_tag="BARCL_0121"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(order(135241..135243,135319..135324,
135328..135330,135427..135429,135574..135576,
135580..135585,135679..135687))
/gene="argD"
/locus_tag="BARCL_0121"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(135241..135243,135319..135321,
135328..135330,135427..135429,135580..135585,
135679..135684))
/gene="argD"
/locus_tag="BARCL_0121"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(135241..135243)
/gene="argD"
/locus_tag="BARCL_0121"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 136161..136313
/locus_tag="BARCL_0122"
/db_xref="GeneID:10137981"
CDS 136161..136313
/locus_tag="BARCL_0122"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158393.1"
/db_xref="GI:319898300"
/db_xref="GeneID:10137981"
/translation="MICLQVGENILKEHDQDIMTLVMESVHIIVSEIVFLFINSVIWV
KYYAFC"
gene 136403..136936
/locus_tag="BARCL_0123"
/db_xref="GeneID:10137327"
CDS 136403..136936
/locus_tag="BARCL_0123"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158394.1"
/db_xref="GI:319898301"
/db_xref="GeneID:10137327"
/translation="MGWTCERVELLKKLWGEGLSASQIAAQLGGVSRNAVIGKVHRLK
LSGRGKTTQVVSRVQKVLTGVNASAPRMRRATSSILQDNGSSCDSEVTNLRIESVIEN
VTEASIPEKSNVVIPMSRNLNLLQLNENTCRWPVGDPLSSSFHFCGADSSENSPYCDF
HAKIAFQPLSERRRLRV"
misc_feature 136403..136930
/locus_tag="BARCL_0123"
/note="GcrA cell cycle regulator; Region: GcrA; pfam07750"
/db_xref="CDD:116364"
gene complement(137246..137632)
/locus_tag="BARCL_0124"
/db_xref="GeneID:10137328"
CDS complement(137246..137632)
/locus_tag="BARCL_0124"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein"
/protein_id="YP_004158395.1"
/db_xref="GI:319898302"
/db_xref="GeneID:10137328"
/translation="MINFWGSWCLPCRAEHPILIEIAKDKRFDLIGINYKDNQDNAQR
FLNNFGNPFKLIGFDALGLTAINWGIYGPPETFILNKDSIIIGKHTGPLTWQIYQKEI
LPKIEKAIITDYIHVKSNLTITTHNT"
misc_feature complement(137336..>137632)
/locus_tag="BARCL_0124"
/note="TlpA-like family, DsbE (also known as CcmG and
CycY) subfamily; DsbE is a membrane-anchored, periplasmic
TRX-like reductase containing a CXXC motif that
specifically donates reducing equivalents to apocytochrome
c via CcmH, another cytochrome c...; Region:
TlpA_like_DsbE; cd03010"
/db_xref="CDD:48559"
misc_feature complement(order(137597..137599,137606..137608))
/locus_tag="BARCL_0124"
/note="catalytic residues [active]"
/db_xref="CDD:48559"
misc_feature complement(137456..137524)
/locus_tag="BARCL_0124"
/note="central insert; other site"
/db_xref="CDD:48559"
gene complement(137853..138104)
/gene="ccmD"
/locus_tag="BARCL_0125"
/db_xref="GeneID:10137329"
CDS complement(137853..138104)
/gene="ccmD"
/locus_tag="BARCL_0125"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Heme exporter protein CcmD"
/protein_id="YP_004158396.1"
/db_xref="GI:319898303"
/db_xref="GeneID:10137329"
/translation="MLQLNDTQNEAFGNFVQRIDFFLGTLHHEQIVALSYMLSASVLF
CFIGYILRKSVRQKKILKQLQTKDTIWKKQYNENHSSQT"
misc_feature complement(137910..138011)
/gene="ccmD"
/locus_tag="BARCL_0125"
/note="Heme exporter protein D (CcmD); Region: CcmD;
cl11475"
/db_xref="CDD:212319"
gene complement(138092..138865)
/gene="ccmC"
/locus_tag="BARCL_0126"
/db_xref="GeneID:10138017"
CDS complement(138092..138865)
/gene="ccmC"
/locus_tag="BARCL_0126"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heme exporter protein C"
/protein_id="YP_004158397.1"
/db_xref="GI:319898304"
/db_xref="GeneID:10138017"
/translation="MNELSQKKTKISLENPTRFMEISSAALPWLTSITLFLLILGLIL
VVYSPNDYQQGITVKIMYIHVPFAWLSTFCYIIMSAAALGSLIWSHRLADIALKCGAP
IGTIFTALALITGALWGRPTWGTWWVWDARLTSVLILFFIYLAIVTLAYSFDNQIKAA
HATAILTLVGLVNIPIIKFSVNWWNTLHQPASLLRAGGMTIDRTMLWPLITMTFCFTF
MFIVLHLMTMQNEITYRHIKTLQIKAAHHQHQDFSPCSN"
misc_feature complement(138170..138721)
/gene="ccmC"
/locus_tag="BARCL_0126"
/note="heme exporter protein CcmC; Region: ccmC;
TIGR01191"
/db_xref="CDD:162244"
gene complement(138911..139576)
/gene="ccmB"
/locus_tag="BARCL_0127"
/db_xref="GeneID:10138016"
CDS complement(138911..139576)
/gene="ccmB"
/locus_tag="BARCL_0127"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heme exporter protein CcmB"
/protein_id="YP_004158398.1"
/db_xref="GI:319898305"
/db_xref="GeneID:10138016"
/translation="MKALFWRDLKLILASHTSLLTGPLFFIAIIIITPFALGTDPDTL
TRIGPGILWLSALLAGLLNLNKLFQTDRDDGNLDQLILFGQRKSLTFIVFIKCLAHWA
GTMLPLIFIIPIAAFMFHLDTIITFTTILTLVFGTPALIFIGAIGAALATSLAHNTML
IFIIILPWTIPIIIFGVTAATAPITSKISFLTALAFLFAFSIFFGIFSSFVTAITLKY
LSE"
misc_feature complement(<139223..139567)
/gene="ccmB"
/locus_tag="BARCL_0127"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene complement(139578..140198)
/gene="ccmA"
/locus_tag="BARCL_0128"
/db_xref="GeneID:10138015"
CDS complement(139578..140198)
/gene="ccmA"
/locus_tag="BARCL_0128"
/EC_number="3.6.3.41"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cytochrome c biogenesis ATP-binding export
protein CcmA"
/protein_id="YP_004158399.1"
/db_xref="GI:319898306"
/db_xref="GeneID:10138015"
/translation="MVLSGKNLTVHRNEKTLFKGLSFSLSTQQLMTITGPNGIGKSTL
LRIIVGLFKATEGDLKLEDKGKIYPLAIACHYLNTQNAMKSSLSVIDNLKFWAEFYGQ
HFYYPHDALADIGLSDLAHLPFNILSTGQKRRVAIARLLLSYRPIWVLDEPISGLDHY
AQTIFAKLFQRHLNQGGMIIAATHIPLGLKEHHVIALEHFYPLRKK"
misc_feature complement(139599..140198)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="cytochrome c biogenesis protein CcmA; Provisional;
Region: PRK13539"
/db_xref="CDD:184126"
misc_feature complement(139626..140192)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(140073..140096)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(139647..139649,139743..139748,
139962..139964,140070..140078,140082..140087))
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(139962..139973)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(139791..139820)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(139743..139760)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(139725..139736)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(139641..139661)
/gene="ccmA"
/locus_tag="BARCL_0128"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 140495..143182
/gene="acnA"
/locus_tag="BARCL_0129"
/db_xref="GeneID:10138014"
CDS 140495..143182
/gene="acnA"
/locus_tag="BARCL_0129"
/EC_number="4.2.1.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aconitate hydratase"
/protein_id="YP_004158400.1"
/db_xref="GI:319898307"
/db_xref="GeneID:10138014"
/translation="MSQIDSFNCRRILSVDGKEYIYYSLIEAEKNGLEAVSHLPFSMK
VLLENLLRFEDGRIVKKEDILNVAEWLNNKGRSGVEIAYRPARVLMQDFTGVPAVVDL
SAMRDAMQKLGGNAEKINPLIPVDLVIDHSIIVDDFGNSEAFKKNVGYEYERNSERYR
FLKWGQQAFKNFRVVPPGTGICHQVNLEYLAQCVWTKDDESCQTVYPDTCVGTDSHTT
MINGLGVLGWGVGGIEAEAAMLGQPVSMLLPEVIGFRLTGKLKEGVTATDLVLVITQM
LRKKGVVGKFVEFFGSGLKHMTLSDRATIANMAPEYGATCGFFPIDKETVRYLNMTGR
DEGRIALVETYSKAQGMWHDERVEDPVFSDTIELDMGSVVPSMAGPKRPEGRISLENV
GQGFEKALVDDYKKTINQNDYYKVENKDYEIGHGDVVIAAITSCTNTSNPSVLIAAGL
LARNAVAKGLRSKPWVKTSLAPGSQVVEAYLIDSGLQKDLDVLGFNLVGFGCTTCIGN
SGPLSPAISKVINDNGLITAAVLSGNRNFEGRVSPDVQANYLASPPLVVAHALAGTVR
KNLTKEPLGVGSDGQPVYLRDIWPTSEEIQEFIEQNVTREIFVEKYADVFKGDENWQK
VQAPAGVTYSWDDQSTYVRNPPYFDNMLKVPGALADIKNARILGLFGDKITTDHISPA
GSIKVDSPAGKYLIDHGVKVADFNQYGTRRGNHEVMMRGTFANIRIRNFILGENGREG
GYTVHYPSEREESIYDAAMTYKQEGVPLVVFAGIEYGNGSSRDWAAKGAYLLGIKAVV
AQSFERIHRSNLVGMGIVPFVFEVGTSWQSLGLKGNETITIEGINDLKPRQKITATIT
FIDGTEKTLPLLCRIDTEDELDYLHHGGILQYVLRNLAV"
misc_feature 140495..143176
/gene="acnA"
/locus_tag="BARCL_0129"
/note="aconitate hydratase; Validated; Region: PRK09277"
/db_xref="CDD:181750"
misc_feature 140753..142189
/gene="acnA"
/locus_tag="BARCL_0129"
/note="Aconitase A catalytic domain; Region: AcnA_IRP;
cd01586"
/db_xref="CDD:153136"
misc_feature order(140765..140767,140774..140776,141134..141139,
142010..142012,142097..142099,142112..142114)
/gene="acnA"
/locus_tag="BARCL_0129"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:153136"
misc_feature order(141140..141142,141800..141802,141998..142000,
142007..142012,142094..142096)
/gene="acnA"
/locus_tag="BARCL_0129"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:153136"
misc_feature 142499..143017
/gene="acnA"
/locus_tag="BARCL_0129"
/note="Aconitase A swivel domain. This is the major form
of the TCA cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group...; Region: AcnA_IRP_Swivel;
cd01580"
/db_xref="CDD:29529"
misc_feature 142832..142840
/gene="acnA"
/locus_tag="BARCL_0129"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29529"
gene 143411..143677
/gene="rpsT"
/locus_tag="BARCL_0130"
/db_xref="GeneID:10137958"
CDS 143411..143677
/gene="rpsT"
/locus_tag="BARCL_0130"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_004158401.1"
/db_xref="GI:319898308"
/db_xref="GeneID:10137958"
/translation="MANTPSAKKAVRKIAARTQINKARRSRVRTFIRKLDDALAFGDK
EFAEVAFKNFEPEIMRAVSKGVLHKNTAARKVSRLAKRLKALKA"
misc_feature 143411..143674
/gene="rpsT"
/locus_tag="BARCL_0130"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 144399..145961
/gene="dnaA"
/locus_tag="BARCL_0131"
/db_xref="GeneID:10138550"
CDS 144399..145961
/gene="dnaA"
/locus_tag="BARCL_0131"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein DnaA"
/protein_id="YP_004158402.1"
/db_xref="GI:319898309"
/db_xref="GeneID:10138550"
/translation="MNSKADSFKKVTMDILSTEKMINEMVEIKGAGGVKSSLEPLVFS
EEESTAAFARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLIKLSVPTAFLRSWINNHY
SALLTTLWQQENSEILRVEVIVRSMERVSKGLVCRSNKSSVVIVPEEQSVSPLVESYG
EQSIKGIQVGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSSLRFNPLFIYA
SVGLGKTHLLQAIAAAALKRSTPVRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDID
LLIIDDMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGG
VALEIEAPDYEMRLEILRQRLKAAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQ
LLFRQSFETDLSLERIDEFLGHLTRSGELKRIRIEEIQRTVARHYNISRQDLLSNRRT
RTVVKPRQVAMYLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKEL
ELLKRLIGEHAA"
misc_feature 144546..145943
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 144546..144734
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 144969..145382
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 145050..145073
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(145053..145076,145239..145241,145338..145340)
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 145227..145244
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 145380..145382
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 145674..145943
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(145743..145745,145767..145772,145791..145793,
145809..145817,145842..145856,145863..145865,
145872..145877)
/gene="dnaA"
/locus_tag="BARCL_0131"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 146160..147281
/gene="dnaN"
/locus_tag="BARCL_0132"
/db_xref="GeneID:10138074"
CDS 146160..147281
/gene="dnaN"
/locus_tag="BARCL_0132"
/EC_number="2.7.7.7"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_004158403.1"
/db_xref="GI:319898310"
/db_xref="GeneID:10138074"
/translation="MRIIIGRSQLLKSLSRVHRVVERRNAIPILSNVLIDASSGGMQL
KATDLDLEVIESSSVNIEKAGAITVPAHLLYDIVRKLPDDSEVILEVDENQPSTMSVT
SGCANFRLQCLPKVDFPESLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGI
YFHIIDDGTSKLRLVSTDGHRLAQVDIEAPSGAGGMPGVIIPRKTVGELQKLLGEEAD
NDVCIELSDTKIRFSVGSVILTSKLIDGVFPEYQRVIPLGNDKKLVINRQDFSSAVDR
VSTISSDRGCAVKLTIEKGLLRFVVNNPDSGSAEDQLVADYASDLLEIGFNSRYLLDI
AAQISSHEMIFMLADPGAPALIRGNGDTNALYVLMPIRV"
misc_feature 146160..147278
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 146160..147275
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(146229..146231,146373..146375,146394..146396,
146769..146771)
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(146376..146378,146385..146387,146472..146474,
146478..146480,146994..146996,147087..147092)
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(146688..146690,146694..146705,147138..147140,
147264..147275)
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(146688..146690,146694..146699,146919..146921,
147024..147026,147063..147068,147147..147149,
147264..147275)
/gene="dnaN"
/locus_tag="BARCL_0132"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 147294..148436
/gene="recF"
/locus_tag="BARCL_0133"
/db_xref="GeneID:10138082"
CDS 147294..148436
/gene="recF"
/locus_tag="BARCL_0133"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein"
/protein_id="YP_004158404.1"
/db_xref="GI:319898311"
/db_xref="GeneID:10138082"
/translation="MRCSAGHIHKVAVRQLKLANYRNYCSLVLHLLGQHVVLTGRNGA
GKTNLLEALSFLSPGRGLRRAAYSDVSFSERKGAGFVVFARLECALYGEVNIGTALEV
NDSSRKVHINGINEASDCLTDYCHISILTPSMDRLFTGPSLDRRRFLDRMVLSIDSLH
GRRIADYDRVMRARNRLFLDRNNDRAWLDALEVQMAELATAIAAARIDVIQLLNDMFA
QTSSCIPFPRALLKVDGFLEKALRETSAIEVEEQFLHRLRKNRAIDCAAGRTLEGPHR
TDLQVFYADKNMDATFCSTGEQKALLTGLVLCHARLTSTISNMAPILLLDEIAAHFDS
HRRAALFDILDDLGGQAFMTGTDHVLFDSLKGRAEFFEIENGILLS"
misc_feature 147324..148421
/gene="recF"
/locus_tag="BARCL_0133"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 147330..>147806
/gene="recF"
/locus_tag="BARCL_0133"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 147411..147434
/gene="recF"
/locus_tag="BARCL_0133"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(147420..147425,147429..147437,147687..147689)
/gene="recF"
/locus_tag="BARCL_0133"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 147678..147689
/gene="recF"
/locus_tag="BARCL_0133"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <148098..148421
/gene="recF"
/locus_tag="BARCL_0133"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 148170..148199
/gene="recF"
/locus_tag="BARCL_0133"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 148257..148274
/gene="recF"
/locus_tag="BARCL_0133"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 148281..148292
/gene="recF"
/locus_tag="BARCL_0133"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 148350..148370
/gene="recF"
/locus_tag="BARCL_0133"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 148489..148932
/gene="aroQ"
/locus_tag="BARCL_0134"
/db_xref="GeneID:10138465"
CDS 148489..148932
/gene="aroQ"
/locus_tag="BARCL_0134"
/EC_number="4.2.1.10"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_004158405.1"
/db_xref="GI:319898312"
/db_xref="GeneID:10138465"
/translation="MSTIITVLNGLNLNFLGKREPEIYGNATLKDIERSCKDRAVEFG
ITLHFYQSNCEGQLVYWIQTAIEVSDGLIINPGAYGHTSFAIFDALKMFPGPIVKVHL
SNIYQRESFRHHSYFPRQQMRLLSGVFVRGIGLHLNILLSSLNVV"
misc_feature 148501..148914
/gene="aroQ"
/locus_tag="BARCL_0134"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:63885"
misc_feature order(148522..148524,148528..148530,148645..148659,
148666..148668,148675..148677,148720..148722,
148741..148743,148750..148755,148762..148764,
148822..148824)
/gene="aroQ"
/locus_tag="BARCL_0134"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:63885"
misc_feature order(148543..148545,148558..148560,148711..148713,
148717..148722,148729..148731,148750..148752,
148789..148797,148822..148824)
/gene="aroQ"
/locus_tag="BARCL_0134"
/note="active site"
/db_xref="CDD:63885"
misc_feature order(148798..148800,148804..148809,148840..148845,
148849..148860,148864..148872,148879..148881,
148891..148893,148903..148905,148912..148914)
/gene="aroQ"
/locus_tag="BARCL_0134"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:63885"
gene 149070..150041
/gene="cyoA"
/locus_tag="BARCL_0135"
/db_xref="GeneID:10137993"
CDS 149070..150041
/gene="cyoA"
/locus_tag="BARCL_0135"
/EC_number="1.10.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit II"
/protein_id="YP_004158406.1"
/db_xref="GI:319898313"
/db_xref="GeneID:10137993"
/translation="MRDFIKQIKMLAILWMALLLSGCKIDVLQPAGYVARQQLILIIL
CVLVMLCVVIPVMVAVVFLAVKYRASKTTEDYLPDWGHSNKIEAFMWGIPIIIVTVLG
LFTAYYTYKLEPSNSLPTDVVGEEKPLQVDVVALDWKWLFIYPEYGIASVNEIYAPQG
RQVLLQITSESSVNAFWVPRLGTVLYAMPQMNAKLHLVADKKGVFNGSSANYSGDGFA
NMRFQWHSVSLKDFDSWVAKVRENGQKLDRLSYRQLSVAPLMGDIAAKEKDAEVRYFS
PVEKRLYYRIVNRCVDENVICNEDLMKRAAAQTLWGTLCSVFDPGAI"
misc_feature 149100..149789
/gene="cyoA"
/locus_tag="BARCL_0135"
/note="cytochrome o ubiquinol oxidase subunit II; Region:
CyoA; TIGR01433"
/db_xref="CDD:200100"
misc_feature <149526..149729
/gene="cyoA"
/locus_tag="BARCL_0135"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; cl11412"
/db_xref="CDD:209309"
misc_feature 149787..149951
/gene="cyoA"
/locus_tag="BARCL_0135"
/note="COX Aromatic Rich Motif; Region: COX_ARM;
pfam06481"
/db_xref="CDD:203465"
gene 150121..152139
/gene="cyoB"
/locus_tag="BARCL_0136"
/db_xref="GeneID:10138051"
CDS 150121..152139
/gene="cyoB"
/locus_tag="BARCL_0136"
/EC_number="1.10.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit I"
/protein_id="YP_004158407.1"
/db_xref="GI:319898314"
/db_xref="GeneID:10138051"
/translation="MFGRLTDPTAAAFHALAHEPIVLYTCIAIVLGGLVVAIALTILG
WWKVLWRDWITTVDHKRIGIMYIILGIIMLVRGFADAIMMRTHQALAFGSETAGYLPP
EHFDQIFSAHGVIMIFFMATPILFGLFNYLIPLQIGARDVAFPFANNLGFWITVAAAV
LINISLGVGNFGRGGWLMYPPFSELQNSPDTGVDYYLWSLQLSGIATTMGSVNFVATI
IKMRAPGMTMMKMPVFCWSAFVSNTLILVIYPVLGVAFVLLAADRYLGMNFFTNVAGG
NPMVWINYVWVFGHPEVYVLVVPAFGIVSEIVSTFSSKRLFGYASMIWAIIVILVLSL
LVWGHHFFTMGGGEAVNTFFGIATMIISVPTGVKVFNWLLTMYKGRIRFEPPMLWCMG
MIFTFVGGGLTGVLMSIVPADWQFHNSLFLVAHFHHTIIGGVVFAYLAGLAFWFPKVF
GIKPNRILGIASFWCWFVGFYLAFFPVYMLGLMGATRRLQHYIEPGWQPMFMIAAVGA
FVILLGILCFVLQMVLTIWYGIKHKGHLPVTSNDPWGDARTLEWSISSPPPSYNFAII
PEVQSEDAYWDMKKRGYQRPTSGFVKIHMPSNTSAGIVAGFFSLIVGFALVWHIWWLV
ILGLIGFITTIIYHSLTGDHHGYYISAEEVQKTEDIFTAVLKEQEVKL"
misc_feature 150259..151974
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature 150277..151809
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Ubiquinol oxidase subunit I. Ubiquinol oxidase,
the terminal oxidase in the respiratory chains of aerobic
bacteria, is a multi-chain transmembrane protein located
in the cell membrane. It catalyzes the reduction of O2
and simultaneously pumps protons...; Region:
Ubiquinol_Oxidase_I; cd01662"
/db_xref="CDD:29933"
misc_feature order(150316..150318,150511..150513,150541..150543,
150562..150564,150571..150573,150736..150741,
150757..150759,150769..150771)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="D-pathway; other site"
/db_xref="CDD:29933"
misc_feature order(150346..150348,150358..150360,150367..150372,
150430..150432,150439..150447)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Putative ubiquinol binding site [chemical binding];
other site"
/db_xref="CDD:29933"
misc_feature order(150454..150456,151399..151401,151411..151413,
151537..151539,151651..151653)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Low-spin heme (heme b) binding site [chemical
binding]; other site"
/db_xref="CDD:29933"
misc_feature order(150949..150951,150964..150969,151357..151359,
151369..151374,151579..151581)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29933"
misc_feature order(150988..150990,151135..151140,151393..151395)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Binuclear center (heme o3/CuB) [ion binding]; other
site"
/db_xref="CDD:29933"
misc_feature order(150988..150990,151000..151002,151033..151035,
151135..151140,151213..151215,151222..151224)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="K-pathway; other site"
/db_xref="CDD:29933"
misc_feature order(151138..151140,151369..151374,151579..151584)
/gene="cyoB"
/locus_tag="BARCL_0136"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29933"
gene 152136..152807
/gene="cyoC"
/locus_tag="BARCL_0137"
/db_xref="GeneID:10138052"
CDS 152136..152807
/gene="cyoC"
/locus_tag="BARCL_0137"
/EC_number="1.10.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytochrome o ubiquinol oxidase subunit III"
/protein_id="YP_004158408.1"
/db_xref="GI:319898315"
/db_xref="GeneID:10138052"
/translation="MNATTMNHVCTNEYHHDHHNSSIMIFGFWVYILSDLILFSTLFS
SFAVFSASYGGGKAGNEFINLNFVLVETTILLLSSITYGFAMVYAYKGSLANLRVWMA
ITFALGLCFVGMELYEFHELLNEVFYYDPNAYVGIDPATGIKSFGRNVLSAYWSAFFA
LVGTHGLHVSVGLLWMVVMFFHLRRSGLDQNNKTRLTCLSIFWHLLDIVWVGVFTMVY
LLGAL"
misc_feature 152181..152798
/gene="cyoC"
/locus_tag="BARCL_0137"
/note="Ubiquinol oxidase subunit III subfamily. Ubiquinol
oxidase, the terminal oxidase in the respiratory chains of
aerobic bacteria, is a multi-chain transmembrane protein
located in the cell membrane. It catalyzes the reduction
of O2 and simultaneously...; Region:
Ubiquinol_oxidase_III; cd02863"
/db_xref="CDD:29487"
misc_feature order(152199..152204,152214..152216,152223..152225,
152244..152249,152256..152261,152268..152270)
/gene="cyoC"
/locus_tag="BARCL_0137"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
misc_feature order(152220..152222,152244..152246,152355..152357,
152364..152366,152376..152381,152724..152726,
152745..152747)
/gene="cyoC"
/locus_tag="BARCL_0137"
/note="Subunit III/IV interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
gene 152804..153433
/gene="cyoD"
/locus_tag="BARCL_0138"
/db_xref="GeneID:10138053"
CDS 152804..153433
/gene="cyoD"
/locus_tag="BARCL_0138"
/EC_number="1.10.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cytochrome o ubiquinol oxidase subunit IV"
/protein_id="YP_004158409.1"
/db_xref="GI:319898316"
/db_xref="GeneID:10138053"
/translation="MMSTDKKTHNPSIGSYLVGFILAVLFTLGSFIPVMYGLLDSWAI
STKVIYLIGMALIQIIVQIVFFLHLNSGPDAKWNIVTLLFTAMCVFVIIGGTWWAISH
LNYNMMGGSGRIIEPKINTTIPEDIPEEEFIGVPDSMEQSSETSEPVEQSSETSEPVE
QSSETSKSVEQSSETSEPVEQSSETSEPVEQSSERLSIDSLPDRSYLKD"
misc_feature 152831..153127
/gene="cyoD"
/locus_tag="BARCL_0138"
/note="cytochrome o ubiquinol oxidase subunit IV; Region:
CyoD; TIGR02847"
/db_xref="CDD:131894"
gene complement(153565..154404)
/gene="fabI"
/locus_tag="BARCL_0139"
/db_xref="GeneID:10138054"
CDS complement(153565..154404)
/gene="fabI"
/locus_tag="BARCL_0139"
/EC_number="1.3.1.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Enoyl-[acyl-carrier-protein] reductase"
/protein_id="YP_004158410.1"
/db_xref="GI:319898317"
/db_xref="GeneID:10138054"
/translation="MKGLMKGKRGLIMGIANDHSIAWGIAYQLANAGAELALTYQGET
FRKRVQPLAEKLGCKLLLECDVEKIENVNRIFEYLEKEWKTIDFVVHAIGFSDKTELK
GRYVDVTTRKNFNRTMVISAYSFTEVAQRAGKLMPNGGALLTLTYGASQRVVPNYNIM
GIAKAALEAMVRYLATDFGPQNIRVNAISAGPIRTLAGNGIASARAIFSYQRRNAPLR
RTVNINEIGNAALYLLSDLSSGVTGEIHYVDSGYNILSMPTLEELKQSEEAQENKNSY
NKK"
misc_feature complement(153592..154404)
/gene="fabI"
/locus_tag="BARCL_0139"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK06505"
/db_xref="CDD:180596"
misc_feature complement(153643..154386)
/gene="fabI"
/locus_tag="BARCL_0139"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature complement(order(153811..153822,153826..153837,
153913..153915,153934..153936,153964..153972,
154045..154047,154120..154131,154207..154215,
154282..154284,154342..154347,154357..154365))
/gene="fabI"
/locus_tag="BARCL_0139"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature complement(order(153643..153648,153652..153690,
153694..153696,153709..153711,153718..153723,
153730..153732,153748..153759,153775..153777,
153784..153786,153865..153870,153874..153891,
153895..153900,153907..153912,153919..153924,
153931..153936,153940..153951,153955..153960,
154006..154008,154015..154017,154027..154029,
154036..154041,154048..154053,154060..154065,
154072..154080,154084..154095,154189..154191,
154198..154209,154312..154314))
/gene="fabI"
/locus_tag="BARCL_0139"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(153871..153879,153883..153891,
153895..153900,153907..153912,153919..153924,
153931..153936,153943..153951,153955..153960,
154006..154008,154015..154020,154027..154029,
154036..154041,154048..154053,154060..154065,
154072..154080,154084..154095,154198..154209))
/gene="fabI"
/locus_tag="BARCL_0139"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(153793..153795,153802..153804,
153811..153816,153913..153915,153925..153927,
153934..153936,153964..153966,154117..154119,
154123..154125))
/gene="fabI"
/locus_tag="BARCL_0139"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(153913..153915,153925..153927,
153964..153966,154042..154044))
/gene="fabI"
/locus_tag="BARCL_0139"
/note="active site"
/db_xref="CDD:187630"
gene complement(154454..155674)
/gene="fabB"
/locus_tag="BARCL_0140"
/db_xref="GeneID:10138109"
CDS complement(154454..155674)
/gene="fabB"
/locus_tag="BARCL_0140"
/EC_number="2.3.1.41"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_004158411.1"
/db_xref="GI:319898318"
/db_xref="GeneID:10138109"
/translation="MHRVVVTGMGIISAIGNELQTVLTSLYEARSGVSYAPKHAELGF
RSRVYAKPNINIEEFVDRRAMRFHGYGTAWNHIAMDRAIVDAGLEPNEVSNEYTGIIM
GSGGPSTRSIVEAADLTRQKGPKRVGPFVVPKAMSSTASATLATFFKIKGINYSISSA
CATSNHCIGNAYEMIQYGKQNRIFAGGCEDLDWTLSVLFDAMGAMSSKYNDIPAVASR
AYDINRDGFVIAGGAGVLVLEELELAKARGAKIYGEIVGYGATSDGHDMVSPSGEGAE
RCMRMALANVKNKIDYINPHATATLVGDSSEIKAIRRIFGAGDQCPPISATKSLTGHS
LGAAGVQEAIYTLLMMNHNFICESAHIEELDPDFADMPIIRKRCDNQELNTVLSNTFG
FGGTNATLVFQRYT"
misc_feature complement(154460..155674)
/gene="fabB"
/locus_tag="BARCL_0140"
/note="3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed; Region: PRK07967"
/db_xref="CDD:181184"
misc_feature complement(154469..155671)
/gene="fabB"
/locus_tag="BARCL_0140"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:29421"
misc_feature complement(order(154487..154489,154493..154495,
154844..154846,154880..154894,155069..155074,
155081..155083,155144..155146,155153..155158,
155165..155167,155201..155209,155213..155215,
155219..155221,155237..155239,155249..155251,
155261..155263,155279..155281,155315..155320,
155324..155326,155336..155341,155360..155362))
/gene="fabB"
/locus_tag="BARCL_0140"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29421"
misc_feature complement(order(154676..154678,154787..154789,
155192..155194))
/gene="fabB"
/locus_tag="BARCL_0140"
/note="active site"
/db_xref="CDD:29421"
gene complement(155732..156241)
/gene="fabA"
/locus_tag="BARCL_0141"
/db_xref="GeneID:10138103"
CDS complement(155732..156241)
/gene="fabA"
/locus_tag="BARCL_0141"
/EC_number="4.2.1.60"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-hydroxydecanoyl-ACP dehydratase"
/protein_id="YP_004158412.1"
/db_xref="GI:319898319"
/db_xref="GeneID:10138103"
/translation="MAEQKSRYTYEELLSCARGEMFGKGNAQLPAPPMLMIHRITHIS
ETDGEYNKGIVCAEFDITPDLWFFDCHFIDDPVMPGCLGLDGMWQLTGFFLGWLGEPG
KGRAISTGEVKLSGMVTPQTKLLKYEINFKRIRRGNLVLGIADGSLKADGETIYKAID
LRVALFKES"
misc_feature complement(155738..156163)
/gene="fabA"
/locus_tag="BARCL_0141"
/note="FabA, beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase: Bacterial protein of the type II, fatty
acid synthase system that binds ACP and catalyzes both
dehydration and isomerization reactions, apparently in the
same active site. The FabA...; Region: FabA; cd01287"
/db_xref="CDD:48032"
misc_feature complement(order(155921..155932,155963..155968,
155975..155980,155987..155989,156155..156163))
/gene="fabA"
/locus_tag="BARCL_0141"
/note="active site 1 [active]"
/db_xref="CDD:48032"
misc_feature complement(order(155891..155896,155900..155902,
155906..155932,155987..155989,155999..156001,
156152..156154,156158..156160))
/gene="fabA"
/locus_tag="BARCL_0141"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48032"
misc_feature complement(order(155891..155902,156002..156010))
/gene="fabA"
/locus_tag="BARCL_0141"
/note="active site 2 [active]"
/db_xref="CDD:48032"
gene 156546..156977
/gene="fur"
/locus_tag="BARCL_0142"
/db_xref="GeneID:10138102"
CDS 156546..156977
/gene="fur"
/locus_tag="BARCL_0142"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ferric uptake regulation protein"
/protein_id="YP_004158413.1"
/db_xref="GI:319898320"
/db_xref="GeneID:10138102"
/translation="MNCHSLSELKEHLRKNGLRPTRQRLELANMIFFQGNCHVAAEEL
YEKAIKSSVPISLATVYNTLHQFTAAGLLRIIAVEGSKTWFDTNTSDHYHFYIEGENR
IIDIPCNLEGSPIIENLPQPPKDMEISHVDLIIRLRPKSRI"
misc_feature 156609..156953
/gene="fur"
/locus_tag="BARCL_0142"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(156657..156659,156801..156803,156819..156821,
156825..156827,156858..156860)
/gene="fur"
/locus_tag="BARCL_0142"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 156711..156755
/gene="fur"
/locus_tag="BARCL_0142"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(156816..156818,156822..156824,156891..156893,
156936..156938)
/gene="fur"
/locus_tag="BARCL_0142"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(156831..156839,156897..156902,156921..156929,
156933..156953)
/gene="fur"
/locus_tag="BARCL_0142"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(156834..156836,156843..156845)
/gene="fur"
/locus_tag="BARCL_0142"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene complement(157038..157595)
/locus_tag="BARCL_0143"
/db_xref="GeneID:10138162"
CDS complement(157038..157595)
/locus_tag="BARCL_0143"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158414.1"
/db_xref="GI:319898321"
/db_xref="GeneID:10138162"
/translation="MKHSIWFRFFVLLSCVLMTGGLLFGSFAFSYSQTPHQEFSPSGL
PLPRFASIKSARVNMRVGPGNNYSIIFTYQKQGLPIEIIQEYDQWRKVRDAEGDEGWI
YQSLLSGKRTAITIPWQKDKKHRLMLRKNPRDNAKIVAEVEPNIIGNIRQCNGSWCEL
DIHNIRGWLNQTQLWGIYPDEKIKN"
misc_feature complement(157044..157475)
/locus_tag="BARCL_0143"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3807"
/db_xref="CDD:33601"
misc_feature complement(157269..157439)
/locus_tag="BARCL_0143"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
misc_feature complement(157068..157232)
/locus_tag="BARCL_0143"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
gene 158134..158310
/locus_tag="BARCL_0144"
/db_xref="GeneID:10137330"
CDS 158134..158310
/locus_tag="BARCL_0144"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158415.1"
/db_xref="GI:319898322"
/db_xref="GeneID:10137330"
/translation="MNMCKDKLIHFLVVLVYSFEVLILIGGKKIEEKLCLKFLKIIRI
FVLVQQVLFSFCKI"
gene 158235..161078
/locus_tag="BARCL_0145"
/db_xref="GeneID:10137331"
CDS 158235..161078
/locus_tag="BARCL_0145"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158416.1"
/db_xref="GI:319898323"
/db_xref="GeneID:10137331"
/translation="MLKVFKNYTYFCACTTSAFFFLQNINVNATSKVEDCSENSPFLK
CSDGKTHTFTGKNYQSPEQSGSSFSRAIFVEKQGTVINVANATIINSKTGVSAKENGK
VILQNSTIQKVAEALSVSENGTIKMVGGTIDLDYDKGSIGVSSWSSQGVELENVHITL
SEGKEKRASTGLYAVCSSNKMCNSRITMTNGSINVVGTGAGIDEDSQGNIFLTNVKMT
VKNGGGNEYPYDSLGIYIANNASTFKMINGSIDFTNGVGVLAKKQGYAVLDGVTITGR
NNDDKSATDDKGGLYLDSGGSILFKNGRISVSNTYGITVYQAVDRSIVEEKVNIENST
ITAVMYPAIYVAKQNSSMRNFDASEKKSIVKLSNNSNISGDLLLQAKGGIIEIQADQS
ILKGGVSIANGAIAKFDLKNNSTWTLTTKKSNNFTNQRHLNNIEWFITSLGLDNSTVQ
FDTPKNVVYQTLKIGKGSGIVYSATNNAKLHLNTFISKENNINNQKTDRLLIHGDVSG
TTTVYVTGQNGSAKDDIGRDGNTQGISLIQVSGAAQENSFKLEGGYITINGSPYRYSL
YAYGPGSSRGQANIDQKLVSGHGNDFWDYRLQSEYIPSPPFKSASSEPKYPQKPNLPK
KRVSAVVPQLPSYLLLPHALLHAGLVDMSNQNELLEITQNTANEPEHNEKVSFFTRGY
SGHHRYASNLTVFEYGYGADLDYNAMMAGVVLNTLESEHSALSFGVMGSYGKLSLQPH
DVEQSQKSTFNKWSGKLYAHLQHDTGFYVNGFMFYDLFNGDVATFVRGKTTILKGTLF
SASLMGGQAIITNYDGFIIEPQLQIIYQSIMFNKARDIDHFDIELGNHDQVIARVGGC
LMKAVTSSEEARVVSFYSKLHLAHNYENKRMVYFKDAFQLGAFGSAIETGLGFHAQLF
PNIALHGDLLYKHKLTKAGFSGISVSGGLRYQF"
misc_feature 159378..159962
/locus_tag="BARCL_0145"
/note="Pertactin-like passenger domains (virulence
factors), C-terminal, subgroup 2, of autotransporter
proteins of the type V secretion system of Gram-negative
bacteria. This subgroup includes the passenger domains of
the nonprotease autotransporters, Ag43; Region:
PL2_Passenger_AT; cd01344"
/db_xref="CDD:29329"
misc_feature 159657..161075
/locus_tag="BARCL_0145"
/note="outer membrane autotransporter barrel domain;
Region: autotrans_barl; TIGR01414"
/db_xref="CDD:162346"
misc_feature 160269..161003
/locus_tag="BARCL_0145"
/note="Autotransporter beta-domain; Region:
Autotransporter; smart00869"
/db_xref="CDD:197937"
gene complement(161583..162437)
/locus_tag="BARCL_0146"
/db_xref="GeneID:10137332"
CDS complement(161583..162437)
/locus_tag="BARCL_0146"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158417.1"
/db_xref="GI:319898324"
/db_xref="GeneID:10137332"
/translation="MPHKNPQLHTSKDNFTNQQSAKEIKTPCSAQEKKRRVNKAVAGL
FKENSKKSERQTECLFGEEILILEQGETMSKVQSLKDDYIGYIDTQILCTSTIKQTHI
VSVPRTFQYSQADLKKTVESALSMGSKVSVVNETETRGTMYSILENGTAIISSHLHPI
EHTFEDYVTVAQTFIRTPYLWGGVSGFGLDCSGLVQLSMMMAGKMVLRDTNMQQQTIG
EQLTDTDTLERGDLIFWKGHVAIMVDHKNIIHANGYSMDVMIEPLEEAIKRIAKNHKY
PVAKRRPL"
misc_feature complement(161610..>161990)
/locus_tag="BARCL_0146"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(161640..161909)
/locus_tag="BARCL_0146"
/note="NlpC/P60 family; Region: NLPC_P60; cl11438"
/db_xref="CDD:209322"
gene complement(162562..163944)
/gene="pepA"
/locus_tag="BARCL_0147"
/db_xref="GeneID:10137333"
CDS complement(162562..163944)
/gene="pepA"
/locus_tag="BARCL_0147"
/EC_number="3.4.11.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_004158418.1"
/db_xref="GI:319898325"
/db_xref="GeneID:10137333"
/translation="MLQHQINFTATRSDKSCPILLIDTKSLANLSLDSSITSWMQVND
FTGKAGQILFVPHETGQLKKVLFGLGDKENPFITGLLPKNLPTGNWHLEGTASNEMNT
YLGLAFGSYQFSRYRQKSTSKSLSIHVHNVIDLDELKRIYETVFLVRDLINIPANDMN
PDTLEITTRQLGQTYKAHVKSICGDELLTQNFPMIHTVGRASSIAPRLIELQWGQENH
PKITLVGKGVTFDTGGLDIKSANNMLLMKKDMGGSAHVLGLAKIIMDAKLPFCLHVLI
PAVENAISANAFRPGDILQSRKGLSVEVGNTDAEGRLILADALTYGDEKKPQFMICMA
TLTGAARIALGPDLPAFYCSNPIWAQKISQSANSVADPLWQMPLWKPYKEMLSSSIAD
INNTSGNNFAGSITAALFLNSFVEKAENFAHFDLYGWTPKETPGHPIGGTAQAIRALY
NLFKDQIRYK"
misc_feature complement(162577..163932)
/gene="pepA"
/locus_tag="BARCL_0147"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:179165"
misc_feature complement(162586..163878)
/gene="pepA"
/locus_tag="BARCL_0147"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature complement(order(162628..162630,162730..162732,
162736..162741,162769..162771,162775..162777,
162790..162795,162799..162801,162814..162816,
162820..162825,162901..162903,162910..162924,
163030..163032,163042..163044,163048..163050,
163066..163080,163084..163086,163090..163101,
163105..163107,163201..163206,163213..163215,
163222..163224,163237..163239,163255..163257,
163336..163338,163342..163344,163474..163482,
163486..163488,163753..163755,163777..163779,
163816..163821))
/gene="pepA"
/locus_tag="BARCL_0147"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature complement(order(162937..162939,163009..163011,
163015..163017,163021..163023,163198..163200,
163231..163233,163252..163254,163267..163269))
/gene="pepA"
/locus_tag="BARCL_0147"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature complement(order(163015..163017,163021..163023,
163198..163200,163252..163254,163267..163269))
/gene="pepA"
/locus_tag="BARCL_0147"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene complement(163958..164956)
/gene="coaA"
/locus_tag="BARCL_0148"
/db_xref="GeneID:10138386"
CDS complement(163958..164956)
/gene="coaA"
/locus_tag="BARCL_0148"
/EC_number="2.7.1.33"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_004158419.1"
/db_xref="GI:319898326"
/db_xref="GeneID:10138386"
/translation="MIDIISLKGDQEDNLINYVSEQYSPYTFFTVQEWSQFRANTPLT
LTFDEIKRLRSMDDPIDLEEVQCIYLSLARLLSYHVEAVQELFRKRQIFLHQTDIQKT
PFIIGISGSVAVGKSTTARILQELMKRWKSSLKVDLITTDGFLYPNIILQEKNRMNRK
GFPDSYDIKKLLRFLSDVKAGISNVSAPLYSHMTYDVLENQKIIIDRPDILIVEGVNV
LQVSDYPKDGKIVPFVSDFFDFSIYVDAATEVIHQWYLERFKRLRKTAFQKPESYFHR
YALLNEEEASQIAENLWQTINLKNLQENILPTRPRADLILRKGKNHLVEYVALRKL"
misc_feature complement(163961..164899)
/gene="coaA"
/locus_tag="BARCL_0148"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:180082"
misc_feature complement(163970..164644)
/gene="coaA"
/locus_tag="BARCL_0148"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point
in...; Region: PanK; cd02025"
/db_xref="CDD:30198"
misc_feature complement(order(163991..163993,164003..164005,
164183..164185,164195..164197,164600..164611,
164618..164620))
/gene="coaA"
/locus_tag="BARCL_0148"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(163991..163993,164171..164173,
164183..164185,164381..164383,164594..164596,
164606..164611))
/gene="coaA"
/locus_tag="BARCL_0148"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature complement(order(164315..164317,164606..164608))
/gene="coaA"
/locus_tag="BARCL_0148"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:30198"
gene complement(165093..166082)
/gene="ansA"
/locus_tag="BARCL_0149"
/db_xref="GeneID:10138033"
CDS complement(165093..166082)
/gene="ansA"
/locus_tag="BARCL_0149"
/EC_number="3.5.1.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="L-asparaginase"
/protein_id="YP_004158420.1"
/db_xref="GI:319898327"
/db_xref="GeneID:10138033"
/translation="MKKIVVGTLGGTIAMTADNLGQMQPILTSDMLIKNVPGLKNIAD
IHSQTLTQLPSGSLSFTILLETIEWATQQIKAGADGIVLTQGTDTLEETAFFLSLYWN
KAEPLVVTGAMRIPCEASADGPANLLAATRVAADPQSRNRGVLVVMNDTIHSPYWVQK
SHTVKVETLQSGLAGILGTILEGKLFYFNDRNFVPTIFTVPQKIDHQVALLYSYLSSD
TNLMRFCLESGHYAGLIIAGFGAGHCSFQEADIVRQYAKKIPIIIASRSHHGPTTRTT
YGYKGSEIDMIASGALMSGYLSAVKARLLLWAFLAKGLSQKQIIACWNNWTIS"
misc_feature complement(165126..166079)
/gene="ansA"
/locus_tag="BARCL_0149"
/note="Type II (periplasmic) bacterial L-asparaginase;
Region: L-asparaginase_II; cd08964"
/db_xref="CDD:199208"
misc_feature complement(order(165354..165356,165603..165605,
165747..165749,165819..165827,165915..165923,
166047..166052))
/gene="ansA"
/locus_tag="BARCL_0149"
/note="active site"
/db_xref="CDD:199208"
misc_feature complement(order(165261..165266,165285..165290,
165348..165350,165354..165356,165360..165368,
165390..165392,165399..165401,165423..165425,
165429..165431,165441..165443,165447..165449,
165453..165455,165504..165509,165513..165521,
165525..165527,165540..165542,165546..165548,
165552..165560,165588..165590,165594..165605,
165615..165617,165621..165623,165633..165638,
165708..165713,165720..165728,165741..165743,
165807..165809,165819..165821,165894..165896,
165903..165917,166047..166049))
/gene="ansA"
/locus_tag="BARCL_0149"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
misc_feature complement(order(165174..165176,165183..165188,
165270..165275,165282..165290,165348..165356,
165360..165368,165390..165392,165399..165401,
165408..165413,165420..165425,165429..165431,
165441..165443,165447..165449,165453..165461,
165591..165605,165804..165812,165816..165821,
165894..165896,165903..165917))
/gene="ansA"
/locus_tag="BARCL_0149"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:199208"
gene 166303..166884
/gene="hslV"
/locus_tag="BARCL_0150"
/db_xref="GeneID:10137978"
CDS 166303..166884
/gene="hslV"
/locus_tag="BARCL_0150"
/EC_number="3.4.25.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock protein"
/protein_id="YP_004158421.1"
/db_xref="GI:319898328"
/db_xref="GeneID:10137978"
/translation="MTEHKPNIMYGTTIVTVRKDNKVVMAGDGQVSLGQTIMKSNARK
VRRLGKGGTVIAGFAGATADAFTLLERLETKLEQYPDQLMRACVELAKDWRTDRYLRR
LEAMMLVADKKVTLALTGLGDVLEPEDGVMAIGSGGNFALSAARVLMDIDLDAEAIAC
KAMSIAAKICVYTNDNFTIETLDAELPSLEKAI"
misc_feature 166336..166848
/gene="hslV"
/locus_tag="BARCL_0150"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature order(166336..166338,166384..166386,166390..166392,
166432..166434,166708..166710)
/gene="hslV"
/locus_tag="BARCL_0150"
/note="active site"
/db_xref="CDD:48442"
misc_feature order(166405..166413,166585..166587,166666..166668,
166678..166680,166717..166722,166729..166731,
166753..166755,166783..166785,166795..166797,
166804..166809,166813..166815)
/gene="hslV"
/locus_tag="BARCL_0150"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 166885..168192
/gene="hslU"
/locus_tag="BARCL_0151"
/db_xref="GeneID:10138226"
CDS 166885..168192
/gene="hslU"
/locus_tag="BARCL_0151"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock protein"
/protein_id="YP_004158422.1"
/db_xref="GI:319898329"
/db_xref="GeneID:10138226"
/translation="MCIVFSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQ
MREEVMPKNILMIGPTGVGKTGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIR
DLVEIAISLVREKKRDGVKAKAHINAEERVLDALVGKTASPVTRDSFRKKLREGELDD
KEIEIEVTDNSNSAPTFDIPGMPGAQMGIMNLSDIFGKMGIRTKIRKATVRDAFKPLI
DDESEKLLDQDQIIQEALRVAENDGIVFIDEIDKIATRDGGAGAAVSREGVQRDLLPL
VEGTTIATKYGQIKTDHILFIASGAFHVSKPSDLLPELQGRLPIRVELNALTREDLRR
ILTEPEASLIKQYVALMATEEVHLEITDDAIDALADIAVDLNARIENIGARRLQTVME
RVLDEISFTAPDKAGTSFKVDADYVRKSIGELASDIDLSRFIL"
misc_feature 166897..168189
/gene="hslU"
/locus_tag="BARCL_0151"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature 166930..>167097
/gene="hslU"
/locus_tag="BARCL_0151"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 167035..>167211
/gene="hslU"
/locus_tag="BARCL_0151"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 167056..167079
/gene="hslU"
/locus_tag="BARCL_0151"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 167059..167082
/gene="hslU"
/locus_tag="BARCL_0151"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 167500..167847
/gene="hslU"
/locus_tag="BARCL_0151"
/note="AAA domain (Cdc48 subfamily); Region: AAA_2;
pfam07724"
/db_xref="CDD:203740"
misc_feature 167863..168129
/gene="hslU"
/locus_tag="BARCL_0151"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene complement(168213..169211)
/gene="rsmC"
/locus_tag="BARCL_0152"
/db_xref="GeneID:10138225"
CDS complement(168213..169211)
/gene="rsmC"
/locus_tag="BARCL_0152"
/EC_number="2.1.1.52"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ribosomal RNA small subunit methyltransferase C"
/protein_id="YP_004158423.1"
/db_xref="GI:319898330"
/db_xref="GeneID:10138225"
/translation="MSLFLPFEIYDLPKPYSNQHFLGFGLTEIPDQEWIKNLEIVTPW
RPDFLKFTNAKFRCSPQINQTMIYDGALLQLSKYRDLNHNRFLDLLERVKPGGWIIVS
GEKTVGSASIMKWIKTIVPISKKLSKNHSHVFWIQVPQQIDKQNLTHFRSSPLSFENK
FQTTSGMFSHGRIDPGSAALVPYIQKVISGKTADFGAGWGFLSYTALKVSKNLTTLDL
YEADYNALETAKKNMKHITTSIPISFYWHDLVCEPIKNLYDTIISNPPFHTQKATDIS
LGKHFITNAAKYLKPKGHFLLVANRHLPYEKLLKKLFRTVFIHEEVHGFKIIEARR"
misc_feature complement(168216..169085)
/gene="rsmC"
/locus_tag="BARCL_0152"
/note="16S RNA G1207 methylase RsmC [Translation,
ribosomal structure and biogenesis]; Region: RsmC;
COG2813"
/db_xref="CDD:32642"
misc_feature complement(168318..168632)
/gene="rsmC"
/locus_tag="BARCL_0152"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(168420..168422,168474..168476,
168558..168563,168609..168629))
/gene="rsmC"
/locus_tag="BARCL_0152"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(169282..171483)
/gene="pnp"
/locus_tag="BARCL_0153"
/db_xref="GeneID:10138553"
CDS complement(169282..171483)
/gene="pnp"
/locus_tag="BARCL_0153"
/EC_number="2.7.7.8"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="polyribonucleotide nucleotidyltransferase"
/protein_id="YP_004158424.1"
/db_xref="GI:319898331"
/db_xref="GeneID:10138553"
/translation="MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATV
VSAKTPKPDQNFFPLTVNYQEKNYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPL
FVEGYKNDTQVIVSVIQHDLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQ
YILNPNIDEMPESKLDLVVAGTENAVLMVESEAHELPENVMLNAIMFGQKSFQPVINA
IIKLAEVAAKEPRDFIPENLSVLEKNMLKMVEQDLKDAYTITDKQKRHTAIDVLKEEV
INKFMQKTEENCEFNTDQIATVFKHLQAKIVRQNILDTGKRIDGRNPSDVRAIQSEVG
ILPRTHGSALFTRGETQALVVTTLGTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGEI
GRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSEITESNGSSSMATVCGTSL
ALMDAGVPLARPVAGIAMGLIKEGEKFAILSDILGDEDHLGDMDFKVAGTENGITSLQ
MDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALTSARSELSEFSPRIEMMNITVDK
IRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIASSDLKTIEAAKHWILSIVDEPEIG
AIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASERVAKTTDIVKEGDKVWVKLMGFD
ERGKIRLSMKVVDQQTGKELINNDSIKTEKDNNTDEKNPSEKKHRSKKKED"
misc_feature complement(169399..171483)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:183327"
misc_feature complement(170785..171471)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature complement(order(171367..171369,171376..171378,
171382..171384,171388..171390,171418..171420,
171427..171429,171433..171435,171460..171462,
171466..171468))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature complement(order(171118..171132,171142..171144,
171148..171150,171154..171156,171229..171231,
171241..171255,171262..171273,171277..171288,
171292..171294,171298..171300,171343..171345,
171349..171351,171355..171357,171361..171363,
171388..171390,171403..171420))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature complement(170521..170763)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="Polyribonucleotide nucleotidyltransferase, RNA
binding domain; Region: PNPase; pfam03726"
/db_xref="CDD:202745"
misc_feature complement(169849..170511)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature complement(order(169855..169860,169870..169872,
169882..169884,169894..169896,170473..170475,
170482..170511))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature complement(order(170176..170184,170188..170190,
170194..170196,170200..170202,170290..170292,
170296..170298,170305..170313,170317..170328,
170335..170337,170341..170343,170389..170397,
170407..170415,170419..170421,170425..170427,
170437..170442,170464..170478,170488..170490,
170494..170496))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature complement(order(169954..169956,169960..169962,
169996..169998,170002..170004,170020..170022,
170161..170169,170269..170271,170281..170283,
170332..170334,170338..170340))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="active site"
/db_xref="CDD:206769"
misc_feature complement(169642..169821)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:29003"
misc_feature complement(order(169711..169722,169735..169740,
169747..169752,169759..169773,169777..169785,
169789..169791))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:29003"
misc_feature complement(169759..169770)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="G-X-X-G motif; other site"
/db_xref="CDD:29003"
misc_feature complement(169411..169614)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:88437"
misc_feature complement(order(169528..169530,169534..169536,
169564..169566,169588..169590))
/gene="pnp"
/locus_tag="BARCL_0153"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88437"
misc_feature complement(169468..169473)
/gene="pnp"
/locus_tag="BARCL_0153"
/note="domain interface; other site"
/db_xref="CDD:88437"
gene complement(171719..171988)
/gene="rpsO"
/locus_tag="BARCL_0154"
/db_xref="GeneID:10138412"
CDS complement(171719..171988)
/gene="rpsO"
/locus_tag="BARCL_0154"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_004158425.1"
/db_xref="GI:319898332"
/db_xref="GeneID:10138412"
/translation="MSITAERKQALITEYAIKMGDTGSPEVQVAILSERISNLTNHFK
SHKKDNHSRRGLLKMVSQRRRLLDYLKDIDQDRYQKLIERLGLRR"
misc_feature complement(171731..171970)
/gene="rpsO"
/locus_tag="BARCL_0154"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature complement(order(171782..171784,171794..171796,
171833..171838,171842..171847,171851..171853,
171863..171865,171872..171874,171884..171886,
171905..171907,171914..171916,171965..171967))
/gene="rpsO"
/locus_tag="BARCL_0154"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(171737..171739,171749..171751,
171869..171871,171878..171880,171887..171892,
171899..171901))
/gene="rpsO"
/locus_tag="BARCL_0154"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature complement(order(171731..171736,171797..171799,
171809..171811))
/gene="rpsO"
/locus_tag="BARCL_0154"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene 172033..172188
/locus_tag="BARCL_0155"
/db_xref="GeneID:10138545"
CDS 172033..172188
/locus_tag="BARCL_0155"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158426.1"
/db_xref="GI:319898333"
/db_xref="GeneID:10138545"
/translation="MSSSKGYEITREEKTLTYFDAYIGNKVKILVLEDFLQQMSLFGN
IYFKIFL"
gene 172288..173910
/locus_tag="BARCL_0156"
/db_xref="GeneID:10137334"
CDS 172288..173910
/locus_tag="BARCL_0156"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transport transmembrane protein"
/protein_id="YP_004158427.1"
/db_xref="GI:319898334"
/db_xref="GeneID:10137334"
/translation="MQRISTLEIFHNSTFRNLWIATLVANLGGLVQTVGASWMMTLIS
SSHSMVGFVQSATTLPLVFFSLMAGALADNFNRRRIMLFAQIMMMIVSINLVILSYME
LITPWLLLFFTFLIGCGSALYNPSWQATIGDIVNRESISTAVSLNSVGLNLMRSIGPS
IGGAIISTLGGIAAFFVNALSYIPLIGVLFLWKPNYKNNTLPRERFLGSVADGLRYVA
MSPNLLNIMTRAFLFCVGAISVFALLPIVVHDFFGGNALLYGTLLSCFGLGAITAGII
NSFVRSHFKSEIIVTSAFVGLSFSCFFLAMSRSLFISHFVLFPAGLCWVWALSLFNTS
VQLSTPRWVVARALALYQTASYGGMAVGSAIWGALADGYSLTVALNVCAIFLICGALT
GIKFRIQEIPQINLEPLDQFREPDLSLDLEAQSGPIMIMIDYQINENDLAEFLEIMTR
RRHIRIRDGARQWVLLRDLERPEYWTESYHMPTWVDYLRHNRRRTKADVEVNKHLDKL
NRISNGIKVHRMIKWQTVPKINEMRLKLSNNQ"
misc_feature 172297..173850
/locus_tag="BARCL_0156"
/note="Transmembrane secretion effector; Region: MFS_3;
pfam05977"
/db_xref="CDD:147889"
misc_feature 172339..173460
/locus_tag="BARCL_0156"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(172372..172374,172381..172389,172393..172398,
172447..172449,172456..172461,172468..172470,
172480..172485,172489..172494,172645..172650,
172657..172662,172669..172674,172681..172683,
172717..172722,172729..172734,172750..172752,
172987..172989,172996..173001,173008..173013,
173020..173022,173062..173064,173074..173076,
173086..173088,173095..173097,173107..173109,
173248..173250,173257..173262,173269..173271,
173281..173286,173293..173295,173326..173331,
173338..173343,173350..173355,173362..173364)
/locus_tag="BARCL_0156"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(174017..174976)
/gene="truB"
/locus_tag="BARCL_0157"
/db_xref="GeneID:10137335"
CDS complement(174017..174976)
/gene="truB"
/locus_tag="BARCL_0157"
/EC_number="4.2.1.70"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_004158428.1"
/db_xref="GI:319898335"
/db_xref="GeneID:10137335"
/translation="MTRQRKKKGRPISGWIILDKPKGMSSTAAVSKIKWLFNAQKAGH
AGTLDPLASGILPIALGEATKTVPYVMEGTKTYHFRVAWGEERSTNDLEGKITKTSPI
RPTQENILTLLPKYTGVIWQKPPQFSAIKIAGNRAYDLARKGENIEIPPRQVEIKTLK
LIETTAQGHSIFEMTCRKGTYVRSLARDMGYDLGCYGYIVDLRRIKVAPFGKNDLITW
DELKAAMSHKETTNENCTLPKRDFSKLDQLLIKTDAALHYLSHYTLDETQAMLIKMGN
SALLFEKNVLIDEENVYVTYKDQLLAIGAIDKNQFKPKRIFTI"
misc_feature complement(174020..174976)
/gene="truB"
/locus_tag="BARCL_0157"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK05389"
/db_xref="CDD:180052"
misc_feature complement(174305..174937)
/gene="truB"
/locus_tag="BARCL_0157"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature complement(order(174365..174367,174428..174445,
174521..174523,174584..174598,174746..174748,
174752..174754,174764..174766,174773..174778,
174785..174787,174827..174841,174845..174853,
174887..174889,174896..174898,174902..174904))
/gene="truB"
/locus_tag="BARCL_0157"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature complement(order(174428..174430,174830..174841))
/gene="truB"
/locus_tag="BARCL_0157"
/note="active site"
/db_xref="CDD:211339"
gene complement(174982..175392)
/gene="rbfA"
/locus_tag="BARCL_0158"
/db_xref="GeneID:10138633"
CDS complement(174982..175392)
/gene="rbfA"
/locus_tag="BARCL_0158"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Ribosome-binding factor A"
/protein_id="YP_004158429.1"
/db_xref="GI:319898336"
/db_xref="GeneID:10138633"
/translation="MIKNIGPSQRQLRIGEQVRHAVAHILQRDVLLDDALRNIIISVS
EVRMSSDLKIATCFVSPLNTVDKTSHNAIISALNKHSRFIRGAVSHQLRQMKYMPILR
FRFDNSFDNFAKIDALLRSPEVARDLHHNDKLKD"
misc_feature complement(175006..175377)
/gene="rbfA"
/locus_tag="BARCL_0158"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:179054"
gene complement(175517..178060)
/gene="infB"
/locus_tag="BARCL_0159"
/db_xref="GeneID:10138462"
CDS complement(175517..178060)
/gene="infB"
/locus_tag="BARCL_0159"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_004158430.1"
/db_xref="GI:319898337"
/db_xref="GeneID:10138462"
/translation="MSENNNDKITAKKTLTLKRSGLETSTVKQNFSHGRTKAVVVETK
RRKITRSDEKAEVPQPITKPHVAQRTKPKFEEAPPSKPVAQSNLSSAEIEARRRALEE
AHIQEKITRKKAEKEKRDKEREESLYLQTHQETQILQENKSALEQIPTHTSALSPTEP
IEVIDVKALEIAIPLKNIPPAEKRITNDNDNENRHNRRANSSKSEIRSPKVVKGADER
RRGKLTLNSALDEEGSARGRSIAAMRRRQEKFKRAQNQEPREKISREVILPETITIQE
LAQRMTERSVDVIKFLMKQGQMMKPGDIIDADVAELIAVEFGHTVKRVSESDVEDGIF
NINDDLLKMRPRPPVVTIMGHVDHGKTSLLDAIRKANVVSGEAGGITQHIGAYQVEQN
GQKITFIDTPGHAAFTAMRARGAQVTDIAVLVVSADDSVMPQTIESINHAKAAGVPII
VAINKIDKPTADAQKVRTELLQHEVFVETMGGETLEVEVSAKTGQNLDKLLEAILLQA
ELLDLKADSERTAEGVIIEAKLDRGRGSVATVLVQKGTLHLSDIIVAGNEWGRVRALI
DDHSRHIKEAGPSTPIEILGMQGTPQAGDRFAVVTNEAKAREIAEYRQRLARDKAVAR
QTGSRGSLEQMMTKLQTTGVKEFPLIIKGDVQGSIEAIVSALETLGNEEVRAHIVHSG
VGGITESDISLAETSHSAIIGFNVRANKQARDAAKIQGIEIRYYNIIYDLVDDIKAAM
SGLLSPEQRETFLGNAEILEVFNITKTGKVAGCRVTEGKIERGAGVRLIRDNIVIHEG
KLKTLKRFKDEINEVHVGQECGMAFENYDDIRTGDIIETFRVEHISRTL"
misc_feature complement(177917..178030)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Bacterial translation initiation factor IF-2
associated region; Region: IF2_assoc; pfam08364"
/db_xref="CDD:203919"
misc_feature complement(175520..177277)
/gene="infB"
/locus_tag="BARCL_0159"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature complement(177101..177256)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature complement(176567..177019)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature complement(176978..177001)
/gene="infB"
/locus_tag="BARCL_0159"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature complement(order(176657..176659,176669..176671,
176774..176779,176846..176851,176903..176908,
176954..176959,176966..176968,176975..176980,
176990..176992,176996..176998))
/gene="infB"
/locus_tag="BARCL_0159"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature complement(order(176585..176593,176687..176692,
176696..176701,176846..176848,176975..176995))
/gene="infB"
/locus_tag="BARCL_0159"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature complement(176906..176926)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature complement(176918..176920)
/gene="infB"
/locus_tag="BARCL_0159"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature complement(176852..176863)
/gene="infB"
/locus_tag="BARCL_0159"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature complement(176801..176857)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature complement(176690..176701)
/gene="infB"
/locus_tag="BARCL_0159"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature complement(176585..176593)
/gene="infB"
/locus_tag="BARCL_0159"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature complement(176216..176500)
/gene="infB"
/locus_tag="BARCL_0159"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature complement(175847..176170)
/gene="infB"
/locus_tag="BARCL_0159"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature complement(175550..175801)
/gene="infB"
/locus_tag="BARCL_0159"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene complement(178057..178692)
/locus_tag="BARCL_0160"
/db_xref="GeneID:10138248"
CDS complement(178057..178692)
/locus_tag="BARCL_0160"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158431.1"
/db_xref="GI:319898338"
/db_xref="GeneID:10138248"
/translation="MNERTCIVTKKSASAATLIRFVIDPNNQIIPDLKANLPGRGIWV
SAHHATIEEAVKCKAFSKNLKTDVKVSEDLAHIVDKLLLKTALGSLSMARKAGAIVTG
STKVVSAIRSGQVILVFHAKEAKENGKRKISQAIHAIQQQINQNIKTISLFTSDEMSM
AFGANPVIHAALLNTKAAEGFIKTIYKLITYREDKCNQLGTMTAKVVKEIQ"
misc_feature complement(178078..178692)
/locus_tag="BARCL_0160"
/note="hypothetical protein; Provisional; Region:
PRK09190"
/db_xref="CDD:181685"
misc_feature complement(178459..178689)
/locus_tag="BARCL_0160"
/note="Ylxr homologs; group of conserved hypothetical
bacterial proteins of unknown function; structure revealed
putative RNA binding cleft; proteins are encoded by an
operon that includes other proteins involved in
transcription and/or translation; Region: YlxR; cd00279"
/db_xref="CDD:29345"
misc_feature complement(order(178564..178566,178633..178635,
178681..178683))
/locus_tag="BARCL_0160"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29345"
misc_feature complement(<178312..178425)
/locus_tag="BARCL_0160"
/note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family;
Region: Ribosomal_L7Ae; cl00600"
/db_xref="CDD:207125"
gene complement(178692..180302)
/gene="nusA"
/locus_tag="BARCL_0161"
/db_xref="GeneID:10137336"
CDS complement(178692..180302)
/gene="nusA"
/locus_tag="BARCL_0161"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcription elongation protein"
/protein_id="YP_004158432.1"
/db_xref="GI:319898339"
/db_xref="GeneID:10137336"
/translation="MAISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRY
GQETNIRAEINSKTGEIKLQRLLKVVDIVEDYTTEIALSDALKRKKDAKVGDFLSDLL
PPMDFGRIATQSAKQVIVQKVRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDVG
RGEAIVRRDELIPRESFRYGDRIRAFVHDVHREPRGPQIFLSRTHPQFMAKLFTMEVP
EIYDGIIEIKSVARDPGSRAKIAVVSRDGSIDPVGACVGMRGSRVQAVVAELQGEKID
IIPWSPDAATFIVNALQPAEVSKVVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQ
LTGWNIDILTEQEESENRQKEFTERSKLFMETLDVDEMVGQVMASEGFTSIEEIAYVD
LEEITSIDGFDHDTALEIQNRAREYLECKEKELNEKRKKLGVSDELQTLPGMTNAMLV
ALGEDGIKTMEDFAGYAVDDLVGWRECKEGQTQTFPGILTAFDITRADAETMVLAARV
QAGWINQTDLPQHPVEDAVIDNLDVDTL"
misc_feature complement(178866..180287)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature complement(179916..180278)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature complement(179694..179894)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature complement(order(179802..179804,179808..179810,
179835..179837,179859..179861))
/gene="nusA"
/locus_tag="BARCL_0161"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature complement(order(179709..179711,179808..179810,
179814..179816,179841..179843,179853..179855))
/gene="nusA"
/locus_tag="BARCL_0161"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature complement(179469..179627)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature complement(179523..179534)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature complement(179274..179450)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature complement(179325..179336)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature complement(179058..179198)
/gene="nusA"
/locus_tag="BARCL_0161"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene complement(180351..180974)
/locus_tag="BARCL_0162"
/db_xref="GeneID:10138362"
CDS complement(180351..180974)
/locus_tag="BARCL_0162"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158433.1"
/db_xref="GI:319898340"
/db_xref="GeneID:10138362"
/translation="MEPLFFNVFNVVSSITTWISYMNKIEKGDIDEPRLFEEDGIAAR
VAALIAPLLKPLGFRLVRIKLLGLNGLTLQIMAERANGTMTIEDCETVSRTVAPLLDI
ENIIERKYHLEISSPGIDRPLVRKSDFFHWQGHLAKIETSTAINGRQKFRGKLINVAQ
NGFTLNIDKTADGEEMHEFISFSNITNAHLVLTDELIRDTLKKNYNN"
misc_feature complement(180399..180857)
/locus_tag="BARCL_0162"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature complement(<180558..180821)
/locus_tag="BARCL_0162"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature complement(180393..180623)
/locus_tag="BARCL_0162"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature complement(order(180408..180425,180429..180434,
180444..180452,180483..180485,180504..180506,
180522..180524,180528..180530,180549..180551,
180555..180557))
/locus_tag="BARCL_0162"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature complement(order(180432..180434,180492..180494,
180498..180500))
/locus_tag="BARCL_0162"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene complement(181066..181767)
/locus_tag="BARCL_0163"
/db_xref="GeneID:10137337"
CDS complement(181066..181767)
/locus_tag="BARCL_0163"
/EC_number="2.1.1.33"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N7-)-methyltransferase"
/protein_id="YP_004158434.1"
/db_xref="GI:319898341"
/db_xref="GeneID:10137337"
/translation="MTAHKTLMNEAFFGRRKGKRLRNNQIKLINTLLPTLNINLNEPA
PLKLTSLFTNPVKEVRLEIGFGGGEHLLHEIKCFPNTGFIGVEPFINGMAKILLYIEK
HKEYQNQLRLYNDDATHFLDWLPTASLYGIDLFYPDPWPKKKHWKRRFINEKNLNRFA
RVLKKGKKFRFASDIDTYVNWTLYHCVQHDSFEWLVENPKDWKIPYPLWPSTRYEAKA
LCEGRTPTYLTFIKK"
misc_feature complement(181111..181734)
/locus_tag="BARCL_0163"
/note="tRNA (guanine-N(7)-)-methyltransferase; Reviewed;
Region: trmB; PRK00121"
/db_xref="CDD:178880"
gene complement(181764..183032)
/gene="metK"
/locus_tag="BARCL_0164"
/db_xref="GeneID:10137338"
CDS complement(181764..183032)
/gene="metK"
/locus_tag="BARCL_0164"
/EC_number="2.5.1.6"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_004158435.1"
/db_xref="GI:319898342"
/db_xref="GeneID:10137338"
/translation="MPHQDYLFTSESVSEGHPDKICDRISDEIVDMVYREAHKAGINP
WLIRVACETLVSVNRVVITGELRVPDTLLKKDKNGQFIRDKVGSPIINPAPFRKVVRH
AIRIIGYEQEDFHWKTVKIDVLLRPQSADIAQGVDNAIDRQGEEGAGDQGIMFGYACR
ETPDLMPAPIYYAHKILEHLAIARHKKEGETGKLGPDAKNQITIRYKNGKPAEVTSIV
LSVQHLDETWDSNKVRTVVEPYILQALHDIPISNQCSWYINPTGKFVIGGPKSDAGLT
GRKIIVDTYGGAAPHGGGAFSGKDTTKVDRSAAYAARYLAKNIVAADLADQCTIQLSY
AIGVAEPLSIYLNLHGTGKVDESVIEAAIPKIMDLSPTGIRKHLDLNRPIYAKTAAYG
HFGRKPESDGSFSWEKTNLVGKLKKMIKIP"
misc_feature complement(182643..183023)
/gene="metK"
/locus_tag="BARCL_0164"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature complement(181770..183020)
/gene="metK"
/locus_tag="BARCL_0164"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature complement(182241..182603)
/gene="metK"
/locus_tag="BARCL_0164"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature complement(181809..182237)
/gene="metK"
/locus_tag="BARCL_0164"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene complement(183142..183555)
/gene="dicA"
/locus_tag="BARCL_0165"
/db_xref="GeneID:10138303"
CDS complement(183142..183555)
/gene="dicA"
/locus_tag="BARCL_0165"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_004158436.1"
/db_xref="GI:319898343"
/db_xref="GeneID:10138303"
/translation="MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQI
QKYEKGTNRVGASRLQAIAEIMDVPVSYFFDKGIGIQSVEGFEESDNNFMNFCSSSEG
IQLMRAFTNISDAKVRRKIIDLAKALSEEDHTNKL"
misc_feature complement(183175..183513)
/gene="dicA"
/locus_tag="BARCL_0165"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature complement(183337..183510)
/gene="dicA"
/locus_tag="BARCL_0165"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(183409..183411,183484..183486,
183496..183498))
/gene="dicA"
/locus_tag="BARCL_0165"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(183412..183414,183487..183489))
/gene="dicA"
/locus_tag="BARCL_0165"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(183406..183411,183421..183423,
183430..183432,183463..183468))
/gene="dicA"
/locus_tag="BARCL_0165"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene complement(183700..185214)
/gene="lnt"
/locus_tag="BARCL_0166"
/db_xref="GeneID:10138072"
CDS complement(183700..185214)
/gene="lnt"
/locus_tag="BARCL_0166"
/EC_number="2.3.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_004158437.1"
/db_xref="GI:319898344"
/db_xref="GeneID:10138072"
/translation="MTSFALPPFYLTPICFLTFPIFVIFLDEINTIQNNKKRLLTNAL
IFGNFGFGYFICSLWWLSNALLIDPISFAWALPFSIFCLPAYLAFYWFFAGIIVFLLW
TKNIARFFVLAFALGLAEWLRAILLTGFPWNALGYTAMPTPMLMQSDMIVGLYGMNIL
AVLCYSLPTVLLTNEKKFSALSLCFLIILTHSGFGFYRLNIAPNIAEYHNSNHWVRIV
QPSIQQTTKLSNTKREDIFATHLNLSIKTAISQNPEPDFIIWPEASLPYIISNSSSIF
TKSIGSFLKPQQWAIIGAIRTDDTSPDTQTQYFNTIAVIDAKGDILHTSDKLHLVPFG
EYLPYQNLLKKIGLHALADTIGGYNAANVRKTVMTPNGFSYLPLICYEAIFPNATTFK
GPPPQAIINITNDAWFGKTPGPYQHFQQAQLRAVELGIPLIRAANNGISAVIDSYGRI
ISSLGHDIIDVLDAPIPQPINHIWNNKYRTFSTFILFILMLLCRISFGSTKQLK"
misc_feature complement(183736..185214)
/gene="lnt"
/locus_tag="BARCL_0166"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
lnt; PRK00302"
/db_xref="CDD:178970"
misc_feature complement(183739..184572)
/gene="lnt"
/locus_tag="BARCL_0166"
/note="Apolipoprotein N-acyl transferase (class 9
nitrilases); Region: ALP_N-acyl_transferase; cd07571"
/db_xref="CDD:143595"
misc_feature complement(order(184003..184005,184063..184068,
184072..184077,184210..184212,184222..184224,
184234..184236,184429..184431))
/gene="lnt"
/locus_tag="BARCL_0166"
/note="putative active site [active]"
/db_xref="CDD:143595"
misc_feature complement(order(184075..184077,184234..184236,
184429..184431))
/gene="lnt"
/locus_tag="BARCL_0166"
/note="catalytic triad [active]"
/db_xref="CDD:143595"
misc_feature complement(order(183748..183762,183895..183900,
183934..183939,183943..183951,183955..183960,
184045..184047,184054..184068,184072..184074,
184186..184194,184213..184215,184222..184233))
/gene="lnt"
/locus_tag="BARCL_0166"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143595"
gene complement(185296..186318)
/gene="tlyC"
/locus_tag="BARCL_0167"
/db_xref="GeneID:10138275"
CDS complement(185296..186318)
/gene="tlyC"
/locus_tag="BARCL_0167"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hemolysin"
/protein_id="YP_004158438.1"
/db_xref="GI:319898345"
/db_xref="GeneID:10138275"
/translation="MADKINTQNNTQISSNSEEYPLQRTSHTKKNSLLGCLFSFLRRR
NHTLLRDGLTDVLAADNEKGTALFSPEERTMLHNILCLREARVDNIMIPRSEIEALEI
NTPLGEALKFFAKIGHSRIPVYAETLDDPRGMIHIHDILNYITPFITGFTQNEQKYDS
LQLSHTDLHHPIGELDLIRTVLFVPRSMLASKLLTRMQTTRTQMALVIDEYGGTDGLV
SMEDIVELVVGDIEDEHDNTDNAIVREPDNKWLVDAKTELKDVEKALGPDFVVGEYGD
DVDTIGGLIVSILDRIPSKGEIIETVPGYRFRILEADKRRIKRLRIFRIPENENLKEK
QPYKDS"
misc_feature complement(185380..186261)
/gene="tlyC"
/locus_tag="BARCL_0167"
/note="Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism]; Region: CorC; COG4535"
/db_xref="CDD:34182"
misc_feature complement(185644..186036)
/gene="tlyC"
/locus_tag="BARCL_0167"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(185380..185592)
/gene="tlyC"
/locus_tag="BARCL_0167"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene complement(186420..186896)
/locus_tag="BARCL_0168"
/db_xref="GeneID:10138616"
CDS complement(186420..186896)
/locus_tag="BARCL_0168"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158439.1"
/db_xref="GI:319898346"
/db_xref="GeneID:10138616"
/translation="MIAIDMTIESAKWGDEKMLYNITEKALTTTLQHLSLNEVRSELS
LLFTDDKHMAQINAQWRHQNKSTNVLSFPSFPLKAGQNPGLMLGDIIIAQETIMREAE
EEKKSFQDHLTHIIIHGILHLLGYNHETNDEANQMEKLEREILQKLSIKDPYTKLL"
misc_feature complement(186453..186824)
/locus_tag="BARCL_0168"
/note="Uncharacterized protein family UPF0054; Region:
UPF0054; pfam02130"
/db_xref="CDD:202122"
gene complement(186893..188017)
/gene="phoH"
/locus_tag="BARCL_0169"
/db_xref="GeneID:10137339"
CDS complement(186893..188017)
/gene="phoH"
/locus_tag="BARCL_0169"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="PhoH-like protein"
/protein_id="YP_004158440.1"
/db_xref="GI:319898347"
/db_xref="GeneID:10137339"
/translation="MKASTKKSKHIPKIKSVPFQNTGISKTADTFNINHVVLTFENNN
IAKIVFGKFDENLAYIEKKLKLDIRPHGNKISIRGTATAIQQAQYVLDQLYQKAKTHQ
ELTLSDTESAIAMANLPNEQQKKLQITEPSAKHRLAQFNTHKKTIYARTLTQDAYMRA
MEHAELVFGIGPAGTGKTYLAVAYAVMLLKCGIIERIILSRPAIEAGEHLGFLPGNLK
EKVDPYLRPLYDALYDMMPAEKVERVLASEVIEIAPLAFMRGRTLAHSVIILDEAQNT
TPMQMKMFLTRLGEGSRMIVTGDLSQIDLPAEQKSGLVEAVRILSDIENITIIHFNEK
DVVRHPLVSTIIRAYDYDFAEQKKQYRSHTFHKKNECNFL"
misc_feature complement(186935..187918)
/gene="phoH"
/locus_tag="BARCL_0169"
/note="Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms]; Region:
PhoH; COG1702"
/db_xref="CDD:31888"
misc_feature complement(186968..187582)
/gene="phoH"
/locus_tag="BARCL_0169"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
misc_feature complement(187484..187498)
/gene="phoH"
/locus_tag="BARCL_0169"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(187196..187207)
/gene="phoH"
/locus_tag="BARCL_0169"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
gene complement(188123..189505)
/gene="miaB"
/locus_tag="BARCL_0170"
/db_xref="GeneID:10138404"
CDS complement(188123..189505)
/gene="miaB"
/locus_tag="BARCL_0170"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158441.1"
/db_xref="GI:319898348"
/db_xref="GeneID:10138404"
/translation="MNHHTNSKNILPSGPKKVFIKTYGCQMNVYDSQRMNDSLSAQGY
ITTQTPNDADLILINTCHIREKAAEKLYSDLGRLQIIRQERTNDKPLMIGVTGCVAQA
EGNEILRRAPTVDFIIGPQMYHRLPELLKQVTQGKKVVETNYAVEDKFTHLPPHNKRA
VQQRGISAFLTVQEGCDKFCTFCVVPYTRGAEISRSVEQITNEAHQLIEAGVKEITLL
GQNVNAWHGQSIDGKTWRLGDLLHHLAKIDGLKRLRYTTSHPCDMDDSLIAAHRDLDI
LMPYLHLPVQSGSDRILKAMNRQHKSIHYLHLIDKIRAARPDIAFSGDFIVGFPGETD
EDFEETIKLIKQVGYSSAYSFKYSSRPGTVGATMKNHVDETVKNARLQHLQTVLLDQQ
HIFLHSKIGQTTDVLIEKIGRHSGQMVGRSPWLLPVVVNTQASVGTIIKIRIKNASSN
SFVGEKADIY"
misc_feature complement(188141..189463)
/gene="miaB"
/locus_tag="BARCL_0170"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14325"
/db_xref="CDD:184622"
misc_feature complement(189149..189457)
/gene="miaB"
/locus_tag="BARCL_0170"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature complement(188384..188983)
/gene="miaB"
/locus_tag="BARCL_0170"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(188435..188437,188528..188530,
188660..188662,188732..188740,188843..188848,
188852..188854,188954..188962,188966..188968,
188972..188974,188978..188980))
/gene="miaB"
/locus_tag="BARCL_0170"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(188141..188314)
/gene="miaB"
/locus_tag="BARCL_0170"
/note="TRAM domain; Region: TRAM; cl01282"
/db_xref="CDD:120537"
gene complement(189537..190028)
/locus_tag="BARCL_0171"
/db_xref="GeneID:10138310"
CDS complement(189537..190028)
/locus_tag="BARCL_0171"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Ribosomal-protein-alanine acetyltransferase"
/protein_id="YP_004158442.1"
/db_xref="GI:319898349"
/db_xref="GeneID:10138310"
/translation="MAKSSLTKKFFVIAPLHSEDSIFLHQIHKNCFPLAWTKQTFETF
LKDHSIFGYKAHLIEQPHQILGFCLCRLILGEAEIITIAVHSNNRQQKIGYFLIDHIF
RHLCRERATKLFLEVEETNLPALALYKRFKFQKIAKRPAYYQAQNGLIDAIIMQKTFK
QID"
misc_feature complement(189564..189953)
/locus_tag="BARCL_0171"
/note="ribosomal-protein-alanine acetyltransferase;
Region: rimI; TIGR01575"
/db_xref="CDD:162430"
misc_feature complement(189681..189860)
/locus_tag="BARCL_0171"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(189744..189749,189777..189785))
/locus_tag="BARCL_0171"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(190029..190712)
/locus_tag="BARCL_0172"
/db_xref="GeneID:10137340"
CDS complement(190029..190712)
/locus_tag="BARCL_0172"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158443.1"
/db_xref="GI:319898350"
/db_xref="GeneID:10137340"
/translation="MLILAIDTASIYCAVALVQHKSVIARISKRIGKGHAEKLIGQIE
QLTNQANIKLDQINRIAVNIGPGSFTGIRIGIATARALALALEIPAIGVSSLEALAAQ
VANENTTLIISVVIEAGRGMFYHQNFNKNLIALSMPSLKTTENIVADLPQHTILTGPA
AEIIALHIRNNTINKKTIPDHIPCDAADVLTYAHLAANKQPHESPRPLYLRGADAKQQ
TDFALPRKQ"
misc_feature complement(190080..190706)
/locus_tag="BARCL_0172"
/note="universal bacterial protein YeaZ; Region:
bact_YeaZ; TIGR03725"
/db_xref="CDD:211869"
misc_feature complement(<190332..190616)
/locus_tag="BARCL_0172"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene complement(190950..191975)
/locus_tag="BARCL_0173"
/db_xref="GeneID:10137341"
CDS complement(190950..191975)
/locus_tag="BARCL_0173"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158444.1"
/db_xref="GI:319898351"
/db_xref="GeneID:10137341"
/translation="MSNKNLSFLINLGGGVLICTLISVFAYGLETIEKQLRAEAWIET
LVLAILLGSIVRSCSSIPEYFDKGINFCAKTLLEIAIVLLGASVSVHTVLSAAWTLLA
GIIVIVFLTIFISFAIGRLYGLSKNLAMLVACGNAICGNSAIVATAPVINAKSEEVAA
SIAFTALLGAIIIFILPSLQPFFNLSFNQYGILAGMTVYAVPQVLAATTSISFVTVQI
ATLVKLVRVLMLGPVIFTLAIIYPRPGHHLRLHNFIPWFIIGFIIMMLIRSAELIPTT
ALTPINFITQLFTIISMAGLGLSVDIRSFKKAGWRVICASISSIFVLSVFSILMIKLF
NFNYITF"
misc_feature complement(191037..191960)
/locus_tag="BARCL_0173"
/note="Predicted membrane protein [Function unknown];
Region: COG2855"
/db_xref="CDD:32683"
gene complement(192071..192676)
/gene="recR"
/locus_tag="BARCL_0174"
/db_xref="GeneID:10137342"
CDS complement(192071..192676)
/gene="recR"
/locus_tag="BARCL_0174"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_004158445.1"
/db_xref="GI:319898352"
/db_xref="GeneID:10137342"
/translation="MSKHIAGPEIERLIQLLARIPGLGPRSARRAALHLIKKKETLLE
PLGSALQETANKVRICSVCGNVDTKDPCSICIDPRRDKSIIIVVEDISDLWALERAKI
LPTRYHVLGGRLSPLDGIGPDELNITSLINRVTNNSITEIILAVNATVEGQTTAHYIT
DQLSQFSVKITRLAHGVPVGGELDYLDDGTLAAALRARTNL"
misc_feature complement(192110..192661)
/gene="recR"
/locus_tag="BARCL_0174"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature complement(192434..192550)
/gene="recR"
/locus_tag="BARCL_0174"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature complement(192110..192430)
/gene="recR"
/locus_tag="BARCL_0174"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature complement(order(192224..192226,192230..192232,
192236..192238,192398..192400,192407..192412))
/gene="recR"
/locus_tag="BARCL_0174"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature complement(order(192236..192238,192410..192412))
/gene="recR"
/locus_tag="BARCL_0174"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature complement(order(192113..192115,192128..192130,
192134..192169,192197..192199,192233..192235,
192242..192244,192248..192250,192254..192256,
192377..192382,192386..192394))
/gene="recR"
/locus_tag="BARCL_0174"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene complement(192710..193036)
/locus_tag="BARCL_0175"
/db_xref="GeneID:10138470"
CDS complement(192710..193036)
/locus_tag="BARCL_0175"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158446.1"
/db_xref="GI:319898353"
/db_xref="GeneID:10138470"
/translation="MRDMMNIIKKAKEMQTKMQQIQSELATLEATGIAGGGLVNITIN
GQNTISSIKIDTSLMNPKDVEILEDLVIAAYNDAKIKLDVIIEEKTKSVTAGMPIPSN
FQFPFL"
misc_feature complement(192728..193036)
/locus_tag="BARCL_0175"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:178904"
gene complement(193051..194955)
/gene="dnaX"
/locus_tag="BARCL_0176"
/db_xref="GeneID:10137343"
CDS complement(193051..194955)
/gene="dnaX"
/locus_tag="BARCL_0176"
/EC_number="2.7.7.7"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit gamma and tau"
/protein_id="YP_004158447.1"
/db_xref="GI:319898354"
/db_xref="GeneID:10137343"
/translation="MEQLIEDMPAKMTYRVLARKYRPQNFSDLIGQEAMVCTLNNAFK
TGRIAQAWMLTGIRGVGKTTTARILARALNYKTKDIDQPTTLFDKLGEHCTQIIEGRH
MDVIEMDAASHTGIDDIREIIEQIRYRPISARYKVYIIDEVHMLSTQAFNGLLKTLEE
PPPHVKFIFATTEIRKVPITILSRCQRFNLQRIETAVLVNHLRQIAQLEEIEVQDQAL
FVIARAAEGSVRDALSIFDQAIAHGNGKVDAIAVRIMLGLTDQSRIIDLFESIMKGNI
VHALHELRNQYNAGADPFVILTELADFIHLITRLRLTPEIIENLSFTEEERSRSLDFS
KKLSIPILSRSWQMLLKGLQEVNQAAHPIQAAEMLLIRLTHVADLPTLDEALTKLIQE
KTTPIIVQNHSSQEIIREKNIIKTEVAHNYASSPISDTLQNQSNLSQKRTEHLKIKTS
EKTNLCDTVEIREIVQTNQPDENIKNLSHISPQSEIETTEQKPIIINSLQDIVDLAEQ
HNEIHFKLLIKEFVHPVSFEPEHITLRLAEEAPRSLERDIKKMLHQWTGKHCTITLVN
EGGEPTLQEKSIAIQKSLFSDAQTDPDIAKILNNFPGAKIIDIRFNKKENDLDLIPDI
FNTDNNTNDE"
misc_feature complement(193837..194916)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="DNA polymerase III, subunit gamma and tau; Region:
dnaX_nterm; TIGR02397"
/db_xref="CDD:162839"
misc_feature complement(194395..194799)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(194767..194790)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(194440..194442,194533..194535,
194764..194787))
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(194530..194547)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(194404..194406)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(193789..194217)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
misc_feature complement(193126..193470)
/gene="dnaX"
/locus_tag="BARCL_0176"
/note="DNA polymerase III gamma and tau subunits C
terminal; Region: DUF3646; pfam12362"
/db_xref="CDD:152797"
gene complement(195171..195271)
/locus_tag="BARCL_misc_RNA_2"
/db_xref="GeneID:10138084"
misc_RNA complement(195171..195271)
/locus_tag="BARCL_misc_RNA_2"
/product="SRP_bact"
/inference="profile:Rfam:8.1"
/db_xref="GeneID:10138084"
gene complement(195988..196719)
/gene="kdsB"
/locus_tag="BARCL_0177"
/db_xref="GeneID:10137910"
CDS complement(195988..196719)
/gene="kdsB"
/locus_tag="BARCL_0177"
/EC_number="2.7.7.38"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-deoxy-manno-octulosonate cytidylyltransferase"
/protein_id="YP_004158448.1"
/db_xref="GI:319898355"
/db_xref="GeneID:10137910"
/translation="MTLEPLILIPARMGSTRLPGKALAEIAGKPMIVHVAERAKEAAL
GRIIVATDHDKIAQTVTAYGHECIITCTKHLSGSDRIYEALTKVDPERRYNAILNLQG
DLPTITPNAIVSTLRPLENNLTDIATLGTKLVEENEKINPNVVKIIGTPIAQNRLRAL
YFTRATAPYGDGPFYHHIGLYAYRRESLEQFVKLKLSTLEKREKLEQLRALENNMRID
VEIIDTTFLSVDTQNDLDRVRRILT"
misc_feature complement(195997..196704)
/gene="kdsB"
/locus_tag="BARCL_0177"
/note="CMP-KDO synthetase catalyzes the activation of KDO
which is an essential component of the lipopolysaccharide;
Region: CMP-KDO-Synthetase; cd02517"
/db_xref="CDD:133010"
misc_feature complement(order(196411..196413,196417..196419,
196489..196491,196570..196572,196684..196692))
/gene="kdsB"
/locus_tag="BARCL_0177"
/note="Ligand binding site; other site"
/db_xref="CDD:133010"
misc_feature complement(order(196078..196089,196108..196116,
196123..196128,196201..196203,196213..196233,
196237..196242,196270..196278,196294..196296,
196345..196347))
/gene="kdsB"
/locus_tag="BARCL_0177"
/note="oligomer interface; other site"
/db_xref="CDD:133010"
gene 196884..197381
/locus_tag="BARCL_0178"
/db_xref="GeneID:10138255"
CDS 196884..197381
/locus_tag="BARCL_0178"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158449.1"
/db_xref="GI:319898356"
/db_xref="GeneID:10138255"
/translation="MIVVVGISTISNMIYDDSVQHSYKITNDDTLKETQNMSDESLLL
SDLLKQGDLENGRKIFRQCAICHTSKRDEFNRIGPPLWGIVNRPFAIVKNFSYSKVLR
ANSDKKWDFFTLDRYLQSPRQAFPGTIMSFRGIKNDQDRADLLLYLRSLSDHSIPLPQ
DDEQD"
misc_feature <197043..197342
/locus_tag="BARCL_0178"
/note="Cytochrome c2 [Energy production and conversion];
Region: COG3474"
/db_xref="CDD:33277"
gene 197509..198630
/gene="yejB"
/locus_tag="BARCL_0179"
/db_xref="GeneID:10137344"
CDS 197509..198630
/gene="yejB"
/locus_tag="BARCL_0179"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004158450.1"
/db_xref="GI:319898357"
/db_xref="GeneID:10137344"
/translation="MAAYIARRFLLIIPTLIGILTVTFIIVQFTPGGPIENIIAQLQG
TGGDAIGRIAGGGDFNLSSDVIADSAHVRSLSSGASQYRGAQGLDPEFIARLEKQFGF
DKPPLERYLTMLSRYMRFDFGESYIQGRLVIDLIKDALPVSLSLGFWQLLISYAISIP
LGIRKALKEGSIFDAWTSTIIVIGYAIPSFLFGIFLMVFFAGGSFFDWFPLSHLTSDN
FDTLSFGEKILDYLYHLVLPLTAMVISSFATTTLLTKNCFLEEIRQQYVITARAKGLS
EHSVLYIHVFRNAILVIIACFPATFMGSFFSGSLLIEMLYSLNGIGLLSYTSIVNRDY
SVVFASLYIFSLIGLIISLISDVVYMMVDPRIDFDKKDL"
misc_feature 197509..198624
/gene="yejB"
/locus_tag="BARCL_0179"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4174"
/db_xref="CDD:33914"
misc_feature 197926..198501
/gene="yejB"
/locus_tag="BARCL_0179"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(197974..197979,197986..197991,198004..198006,
198037..198048,198052..198081,198088..198093,
198097..198099,198241..198246,198250..198252,
198256..198258,198265..198270,198274..198276,
198286..198291,198298..198300,198349..198351,
198391..198396,198403..198405,198427..198438,
198445..198450,198487..198492)
/gene="yejB"
/locus_tag="BARCL_0179"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(198055..198099,198427..198444)
/gene="yejB"
/locus_tag="BARCL_0179"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(198097..198099,198226..198228,198445..198447,
198481..198483,198490..198492)
/gene="yejB"
/locus_tag="BARCL_0179"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(198301..198339,198355..198360,198370..198372)
/gene="yejB"
/locus_tag="BARCL_0179"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 198630..199769
/gene="yejE"
/locus_tag="BARCL_0180"
/db_xref="GeneID:10138696"
CDS 198630..199769
/gene="yejE"
/locus_tag="BARCL_0180"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004158451.1"
/db_xref="GI:319898358"
/db_xref="GeneID:10138696"
/translation="MEKERYNRLCNDKLKRWTFLSPLNAHRWHNFKQNRRGWWSLWFF
LFLCVCSFLAEFIANDRPIIVSYKEELLFPIFFDYPDEKFGGNLAKADFRDPFIQNEI
AQHGWAFWPLVRYSYNTVVGNKTLALAPPFWLQSKEERCISYAQGSADPECTINHWNW
LGTDDLTRDIFARVLYGFRVSIIFSILLTVISAIIGITAGAVQGYFGGWIDLICQRLI
EIWSSVPSLYLVIIMAAVLAQGFWMLLGVMLLFQWVVLVGVVRAEFLRARNFTYISAA
RALGVPDRIIMMHHLLPNAMVAALTYLPFLLTSGISLLTSLDYLGFGLPPGYASLGEV
MRQATSNLNAPWIGITGFVVIAVILSLLAFIGEAARDAFDPRKIK"
misc_feature 198681..199760
/gene="yejE"
/locus_tag="BARCL_0180"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4239"
/db_xref="CDD:33962"
misc_feature 198711..>198803
/gene="yejE"
/locus_tag="BARCL_0180"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 199161..199712
/gene="yejE"
/locus_tag="BARCL_0180"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(199209..199214,199221..199226,199239..199241,
199269..199280,199284..199313,199320..199325,
199329..199331,199380..199385,199389..199391,
199395..199397,199404..199409,199413..199415,
199425..199430,199437..199439,199488..199490,
199530..199535,199542..199544,199563..199574,
199581..199586,199629..199634,199662..199667,
199674..199679,199683..199688,199695..199700,
199707..199712)
/gene="yejE"
/locus_tag="BARCL_0180"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(199287..199331,199563..199580)
/gene="yejE"
/locus_tag="BARCL_0180"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(199329..199331,199365..199367,199581..199583,
199617..199619,199632..199634,199662..199664)
/gene="yejE"
/locus_tag="BARCL_0180"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(199440..199478,199494..199499,199509..199511)
/gene="yejE"
/locus_tag="BARCL_0180"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 199769..201379
/gene="yejF"
/locus_tag="BARCL_0181"
/db_xref="GeneID:10138697"
CDS 199769..201379
/gene="yejF"
/locus_tag="BARCL_0181"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein yejF"
/protein_id="YP_004158452.1"
/db_xref="GI:319898359"
/db_xref="GeneID:10138697"
/translation="MTELLSVRDLSVAFFQKETRKYILKQVSFNIREGETVAFVGESG
SGKSITALSILQLLPFLKRLDQSGEILFNNKDLMKLKEEDLRKIRGKDIAMIFQEPMI
SLNPLHTVERQIGEVLKMHAVISDKLLRVHIIDLLKQVGISEPQKRLNSFPHQLSGGQ
RQRVMIAMALANNPKLLIADEPTTALDVTVQAQILELLIQLKKHHKMSMLFITHNLAI
VRRIADRVYVMKKGKIIEDGSTNEIFKNPQHPYTQQLLSAEPKNHPLQADNNAPVLIQ
GQKVRVWFPIKKGLLRRTVDYVKAVQDIDVIIRSGQTLGVVGESGSGKTTLGLALTRM
LSSKGQIIFDGVDISNFNFKQMRSLRRHIQIVFQDPFSSLSPRMSVSEIIAEGLSIHE
PKLSSSERNDRVIEALCEVDLDPTTRFRYPHEFSGGQRQRIALARAIILKPRFIMLDE
PTSSLDMSAQAQIVDLLRYLQLKYHLGYLFISHDLKVVKALAHEVIVMHHGRIVEYSS
ADHMFSCPQNPYTQTLMSAAFALEADRL"
misc_feature 199778..201364
/gene="yejF"
/locus_tag="BARCL_0181"
/note="ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only]; Region: COG4172"
/db_xref="CDD:33913"
misc_feature 199778..200482
/gene="yejF"
/locus_tag="BARCL_0181"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 199889..199912
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(199898..199903,199907..199915,200060..200062,
200306..200311,200408..200410)
/gene="yejF"
/locus_tag="BARCL_0181"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 200051..200062
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 200234..200263
/gene="yejF"
/locus_tag="BARCL_0181"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 200294..200311
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 200318..200329
/gene="yejF"
/locus_tag="BARCL_0181"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 200396..200416
/gene="yejF"
/locus_tag="BARCL_0181"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 200471..>200584
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
misc_feature 200588..201286
/gene="yejF"
/locus_tag="BARCL_0181"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 200720..200743
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(200729..200734,200738..200746,200870..200872,
201113..201118,201215..201217)
/gene="yejF"
/locus_tag="BARCL_0181"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 200861..200872
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 201041..201070
/gene="yejF"
/locus_tag="BARCL_0181"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 201101..201118
/gene="yejF"
/locus_tag="BARCL_0181"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 201125..201136
/gene="yejF"
/locus_tag="BARCL_0181"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 201203..201223
/gene="yejF"
/locus_tag="BARCL_0181"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
gene complement(201331..202113)
/gene="moeB"
/locus_tag="BARCL_0182"
/db_xref="GeneID:10138698"
CDS complement(201331..202113)
/gene="moeB"
/locus_tag="BARCL_0182"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="molybdopterin biosynthesis protein MoeB"
/protein_id="YP_004158453.1"
/db_xref="GI:319898360"
/db_xref="GeneID:10138698"
/translation="MIKKINEKLSKEEIERYARHIILPEIGGIGQQRLKAARVLIIGA
GGLGTPVLLYLAAAGIGTIGIVDDDIVSLSNLQRQVIHSTNTINQYKTISAETTIKAI
NPHVKVEKYNLRLNKSNVDKLLNTYHIIIDGSDNFTTRYLLADHAAQCAKPLISGAIH
RFKGSLTVLMPYKDNNPHYRDLFPNPPAPDTTPTCAETGIIGALPGVIGTLQAMEAIK
LITNIGEPLVGKLLLYNVLSAQFDIISYKRSASSANAADIKV"
misc_feature complement(201361..202095)
/gene="moeB"
/locus_tag="BARCL_0182"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature complement(201379..202068)
/gene="moeB"
/locus_tag="BARCL_0182"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature complement(order(201697..201699,201715..201717,
201841..201843,201880..201882,201907..201909,
201913..201915,201973..201975,201979..201981,
201985..201987))
/gene="moeB"
/locus_tag="BARCL_0182"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature complement(order(201379..201384,201388..201390,
201409..201411,201421..201423,201619..201621,
201625..201627,201637..201642,201694..201696,
201706..201714,201973..201975))
/gene="moeB"
/locus_tag="BARCL_0182"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene 202202..203140
/gene="gshB"
/locus_tag="BARCL_0183"
/db_xref="GeneID:10138312"
CDS 202202..203140
/gene="gshB"
/locus_tag="BARCL_0183"
/EC_number="6.3.2.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glutathione synthetase"
/protein_id="YP_004158454.1"
/db_xref="GI:319898361"
/db_xref="GeneID:10138312"
/translation="MKIAIQMDHIATLQIRGDTTFALALAAQERGHSLFHYTPDCLFI
RDGCVIARLEPLIVCDEEGSHYQLGESIRTELLDMDVVLLRQDPPFDMSYITTTHFLE
RIHPKTLVVNDPVWVRNSPEKIFVTEFFDLMPETLITKDIEEMKAFRSMFGDIIIKPL
YGNGGAGVFHLKQDDRNFASLIEMFEKIYREPFIVQRYLESVREGDKRIILLDGEPVG
AINRIPTATDVRSNIHVGGRVECIDLTERDYEICARIGPALKKRGFLLVGIDVIGDYI
TEINVTSPTGIREIKRFGGADIASLFWDIIELKRLN"
misc_feature 202202..203131
/gene="gshB"
/locus_tag="BARCL_0183"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature 202202..202555
/gene="gshB"
/locus_tag="BARCL_0183"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature 202565..203083
/gene="gshB"
/locus_tag="BARCL_0183"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene 203279..204325
/locus_tag="BARCL_0184"
/db_xref="GeneID:10138205"
CDS 203279..204325
/locus_tag="BARCL_0184"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphate binding protein"
/protein_id="YP_004158455.1"
/db_xref="GI:319898362"
/db_xref="GeneID:10138205"
/translation="MSKLLSIGIGFVSSIILLIDIGYARNRVHIVGSSTVLPYGKIVA
EIFGEMYSNFKVPVIESGGSGAGIKEFCRGIGDNTIDIVHTSRAMKPNELRSCFDAGV
KDVEEMRIGYDGIVFATDINGPDWKLQPVDLYRALAAQVIVDGKLQPNEFMKWSAVNS
DLPDWTITAYIPGEKHGTREIFEEKVLAIGCKASGAIEQMKALGMNDKAINAACVTVR
KDGKAIDIDGDYSETLARLTSGKIGIGVFGLFFYENNADKLKVASINGIYPSAETISN
GSYLISRPLFFYVKKLHLAIVPGMQEYVDLFLSDQMIGLHSPLTEYGLIPISERERQV
QRDAFYSGKVMVLQ"
misc_feature 203348..204211
/locus_tag="BARCL_0184"
/note="PBP superfamily domain; Region: PBP_like_2;
pfam12849"
/db_xref="CDD:205106"
gene 204388..205836
/gene="pstC"
/locus_tag="BARCL_0185"
/db_xref="GeneID:10137345"
CDS 204388..205836
/gene="pstC"
/locus_tag="BARCL_0185"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphate ABC transporter permease"
/protein_id="YP_004158456.1"
/db_xref="GI:319898363"
/db_xref="GeneID:10137345"
/translation="MAVSFIIVLLLIFGVVGFFISYMRACFLQRSGFKMHSRAHYYGW
WTFLITIVPALIFLIFWNGSSSVYLEYTTSRELEAYMVYTTEINNHGLIRSLVKMIPH
FKGTINAALYEDVRGQLLAQGFILPVTVPDYMLRVAESWYSFSEKLQFIGHILFFIIT
LCCFIVGLMQVSPCQRARNKVEYLIVIGLVCASTIAILTTVGIAISMFFQTMNFFQSV
SFSNFFFGTVWDPRFSMNHAEDSVGQFGLIPLLAGTLYIAFVAMLFAVPVGLFAALYM
AEYASTRLRSIVKPLLEVLAGIPTIVYGFFALKIVGPFLQDLSLSLSGGINFIMAQSV
LTAGIVMGIMLIPFVSSLSDDIISAVPRFLREGSYGLGATQSETIKKVVIPAAIPGIV
GALLLTASRAIGETMIVVLAAGVAANLTFNPFEAMTTMTVKIVNQLTGDFEFNSPQTL
VAFALGMTLFILTLLMNILALCIVRKYQERYE"
misc_feature 204403..>204624
/gene="pstC"
/locus_tag="BARCL_0185"
/note="Phosphate ATP-binding cassette transporter; Region:
DUF3708; pfam12501"
/db_xref="CDD:204943"
misc_feature 204931..205821
/gene="pstC"
/locus_tag="BARCL_0185"
/note="phosphate ABC transporter, permease protein PstC;
Region: phosphate_pstC; TIGR02138"
/db_xref="CDD:162724"
misc_feature 205138..205641
/gene="pstC"
/locus_tag="BARCL_0185"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(205186..205191,205198..205203,205216..205218,
205249..205260,205264..205293,205300..205305,
205309..205311,205414..205419,205423..205425,
205429..205431,205438..205443,205447..205449,
205459..205464,205471..205473,205522..205524,
205564..205569,205576..205578,205597..205608,
205615..205620)
/gene="pstC"
/locus_tag="BARCL_0185"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(205267..205311,205597..205614)
/gene="pstC"
/locus_tag="BARCL_0185"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(205309..205311,205399..205401,205615..205617)
/gene="pstC"
/locus_tag="BARCL_0185"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(205474..205512,205528..205533,205543..205545)
/gene="pstC"
/locus_tag="BARCL_0185"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 205833..207125
/gene="pstA"
/locus_tag="BARCL_0186"
/db_xref="GeneID:10138437"
CDS 205833..207125
/gene="pstA"
/locus_tag="BARCL_0186"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphate ABC transporter permease"
/protein_id="YP_004158457.1"
/db_xref="GI:319898364"
/db_xref="GeneID:10138437"
/translation="MSEVFFAHRRNIGLKGRYRAERRFRAYGLSAIFISLFFLVALLW
SIISQGYTAFFQNEMILSVYLDEKVIDPGGQRESNPKILITANYPLLVRNALAEKLGV
DQNDQPSMRDINRMFSQSVRVQLRDIITKNPNLIGTTQKIKVLAAANIDSACKGQIDL
HVPEKNRKISDQQIKWMKYLINDGTLYKTFNRHFFTFGASSRPETSGLGVAMIGSFYM
MIIVLVISLPIGIATALYLEEYARKNKFTDFIEININNLAAVPSIVFGLLGLAVFINF
MGMPRSASFVGGLVLALMTLPTIIIATRSALRAVPFSIRAGALGLGASKTQMVFHHVI
PLAAPGILTGTIIGLAQALGETAPLLLIGMVAFVVDIPMTPMDPATALPVQIFMWASE
AERAFVEKTSGAIIILMVFLVFMNISAVILRRRFERRW"
misc_feature 205860..206330
/gene="pstA"
/locus_tag="BARCL_0186"
/note="Domain of unknown function (DUF3333); Region:
DUF3333; pfam11812"
/db_xref="CDD:152248"
misc_feature 206253..207122
/gene="pstA"
/locus_tag="BARCL_0186"
/note="ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism];
Region: PstA; COG0581"
/db_xref="CDD:30926"
misc_feature 206466..>206921
/gene="pstA"
/locus_tag="BARCL_0186"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(206514..206519,206526..206531,206544..206546,
206580..206591,206595..206624,206631..206636,
206640..206642,206709..206714,206718..206720,
206724..206726,206733..206738,206742..206744,
206754..206759,206766..206768,206817..206819,
206859..206864,206871..206873,206892..206903,
206910..206915)
/gene="pstA"
/locus_tag="BARCL_0186"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(206598..206642,206892..206909)
/gene="pstA"
/locus_tag="BARCL_0186"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(206640..206642,206694..206696,206910..206912)
/gene="pstA"
/locus_tag="BARCL_0186"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(206769..206807,206823..206828,206838..206840)
/gene="pstA"
/locus_tag="BARCL_0186"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 207140..207925
/gene="pstB"
/locus_tag="BARCL_0187"
/db_xref="GeneID:10138435"
CDS 207140..207925
/gene="pstB"
/locus_tag="BARCL_0187"
/EC_number="3.6.3.27"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphate ABC transporter ATP-binding protein"
/protein_id="YP_004158458.1"
/db_xref="GI:319898365"
/db_xref="GeneID:10138435"
/translation="MHKTEVESNMKIKMRGQDVRVLYGKKEAIHGITLDIIEHQVTAL
IGPSGCGKSTFLRCFNRMNDTIEGAKVTGLITLDEENIYDSRIDVVELRARVGMVFQK
PNPFPKSIFENVAYGPRIHGLAKSRTELQDIVEKSLIQAGLFEEVKDRLHGPGTSLSG
GQQQRLCIARAIAVSPEVILMDEPCSALDPIATARIEELIDALRENYTIVIVTHSMQQ
AARVSQYTAMFHLGHLVEVGATEMMFTSPKEQRTQDYITGRFG"
misc_feature 207149..207922
/gene="pstB"
/locus_tag="BARCL_0187"
/note="phosphate transporter ATP-binding protein;
Provisional; Region: PRK14235"
/db_xref="CDD:184581"
misc_feature 207179..207862
/gene="pstB"
/locus_tag="BARCL_0187"
/note="Phosphate uptake is of fundamental importance in
the cell physiology of bacteria because phosphate is
required as a nutrient. The Pst system of E. coli
comprises four distinct subunits encoded by the pstS,
pstA, pstB, and pstC genes. The PstS protein...; Region:
ABC_PstB_phosphate_transporter; cd03260"
/db_xref="CDD:73019"
misc_feature 207275..207298
/gene="pstB"
/locus_tag="BARCL_0187"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73019"
misc_feature order(207284..207289,207293..207301,207440..207442,
207683..207688,207779..207781)
/gene="pstB"
/locus_tag="BARCL_0187"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73019"
misc_feature 207431..207442
/gene="pstB"
/locus_tag="BARCL_0187"
/note="Q-loop/lid; other site"
/db_xref="CDD:73019"
misc_feature 207611..207640
/gene="pstB"
/locus_tag="BARCL_0187"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73019"
misc_feature 207671..207688
/gene="pstB"
/locus_tag="BARCL_0187"
/note="Walker B; other site"
/db_xref="CDD:73019"
misc_feature 207695..207706
/gene="pstB"
/locus_tag="BARCL_0187"
/note="D-loop; other site"
/db_xref="CDD:73019"
misc_feature 207767..207787
/gene="pstB"
/locus_tag="BARCL_0187"
/note="H-loop/switch region; other site"
/db_xref="CDD:73019"
gene 207954..208670
/gene="phoU"
/locus_tag="BARCL_0188"
/db_xref="GeneID:10138436"
CDS 207954..208670
/gene="phoU"
/locus_tag="BARCL_0188"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphate transport system protein PhoU"
/protein_id="YP_004158459.1"
/db_xref="GI:319898366"
/db_xref="GeneID:10138436"
/translation="MSHIVHSYDIELEYLESKISEMGRHAERMIERSVASIVCDDPEL
AATVIADDLFLDEAERDLDEKAITIICKRQPMAVDLREIVGAIRIASDLERIGDMAKN
IAKRTVAISETRQPAAFYRGLETITALARNQLKEVLDAYTSRLLDRIDAVRESDDKID
SLYTSLFRELLTYMMEDMRNITVCTHLLFCAKNIERIGDHVTNIAETLHYIITGHHMT
SGRPRDDMTYTVGVNEKKTN"
misc_feature 207975..208604
/gene="phoU"
/locus_tag="BARCL_0188"
/note="phosphate transport system regulatory protein PhoU;
Region: phoU_full; TIGR02135"
/db_xref="CDD:162721"
misc_feature 208008..208274
/gene="phoU"
/locus_tag="BARCL_0188"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
misc_feature 208320..208571
/gene="phoU"
/locus_tag="BARCL_0188"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
gene 209115..209972
/locus_tag="BARCL_0189"
/db_xref="GeneID:10138405"
CDS 209115..209972
/locus_tag="BARCL_0189"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158460.1"
/db_xref="GI:319898367"
/db_xref="GeneID:10138405"
/translation="MCEMKKNQWVIIILCVILSVIVGCSSNHVNFQKVSNHKKTKSVE
YPLTERQCLMRAMYFESNRSSREGMIAVGTVVMNRVNSSAYPKTICGVVGQRKQFAPG
VLTRPMLEKASVARVKEAADAVLRGERDKKSKNAMFFHTAGLSFPYQNMHYVRVAGGN
AFYEKRRRDGSLQVPVNDSPYDVAFAFSQEHSGNMPNFVNSTMESRKIRTAEIQEVPA
SIAIAQADKKSSMPFGVAQLDRIPIPKFAPRRENELRESTTIVAYTMPLPHQLNAVVA
MLEERHKSR"
misc_feature 209298..209606
/locus_tag="BARCL_0189"
/note="Cell Wall Hydrolase; Region: Hydrolase_2;
pfam07486"
/db_xref="CDD:203645"
gene 210005..211252
/gene="ampS"
/locus_tag="BARCL_0190"
/db_xref="GeneID:10137346"
CDS 210005..211252
/gene="ampS"
/locus_tag="BARCL_0190"
/EC_number="3.4.11.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aminopeptidase"
/protein_id="YP_004158461.1"
/db_xref="GI:319898368"
/db_xref="GeneID:10137346"
/translation="MRFDIDEMISPEMLDRLAEVAIKVGLNLQEGQDLVLTAPVKALP
LVRRITYYAYKAGAGVITPLFGDEALSLIRFENAHSASFDCAPSWLYEGMAKAFENGA
ARLAIVGDDPLLFSNQDLDKISRLNKATSMAYQPALNKISNFTINWSIIAYPTPEWAI
AMFSDLPLDKAVQKLAEAIFSASRVTQDNAVYEWHAHNANLKQRSSWLNEQRFAALHF
IGPGTNLTVGLADEHEWHGGTSIAQNGVVCNPNIPTEEVFTTPHAYKVDGFVRSTKPL
SYQGTLIDNIEVRFEEGRIINASASKGQEVLQRVLQSDEGASRLGEVALVPHSSPISK
SGLLFYNTLFDENAACHIALGQCYSKCFLNGAALTAEDIAMRGGNKSIIHIDWMIGSN
EINIDGIMQDGAKIPVFRRGEWV"
misc_feature 210038..211246
/gene="ampS"
/locus_tag="BARCL_0190"
/note="Thermophilic metalloprotease (M29); Region:
Peptidase_M29; pfam02073"
/db_xref="CDD:145308"
gene 211282..212157
/gene="mutM"
/locus_tag="BARCL_0191"
/db_xref="GeneID:10137977"
CDS 211282..212157
/gene="mutM"
/locus_tag="BARCL_0191"
/EC_number="3.2.2.23"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Formamidopyrimidine-DNA glycosylase"
/protein_id="YP_004158462.1"
/db_xref="GI:319898369"
/db_xref="GeneID:10137977"
/translation="MPELPEVETIRRGLNPFLTGAKIISVKLNRKNLRFPFPEAFSER
LVGRTIVKLGRRAKYLLFYLSRNETILSHLGMSGSWRIEGEFLKKEHSSVSKLVAHDH
CIINVQAKDDRIYRLTYNDVRRFGFMLLTDTRKLYEHPLLKRLGVEPMKNTLSGAYLK
KAFVNKKTSLKTALLDQSIVAGLGNIYVCEALWRSHLSPQRSAFTLALEDLCMLESAN
FLAQNICDVITEAIVAGGTSLRDYMHADGSLGYFQHYFSVYGREGKECLNCEIPIVRI
LQSGRSSFYCPQCQK"
misc_feature 211282..212154
/gene="mutM"
/locus_tag="BARCL_0191"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 211285..211677
/gene="mutM"
/locus_tag="BARCL_0191"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(211285..211290,211453..211455,211498..211500,
211504..211512,211546..211548,211579..211581,
211645..211656)
/gene="mutM"
/locus_tag="BARCL_0191"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 211285..211287
/gene="mutM"
/locus_tag="BARCL_0191"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(211288..211299,211303..211308,211315..211317,
211444..211455,211510..211512)
/gene="mutM"
/locus_tag="BARCL_0191"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(211288..211290,211453..211455)
/gene="mutM"
/locus_tag="BARCL_0191"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 211498..211500
/gene="mutM"
/locus_tag="BARCL_0191"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(211507..211509,211648..211650,211654..211656)
/gene="mutM"
/locus_tag="BARCL_0191"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 211510..211512
/gene="mutM"
/locus_tag="BARCL_0191"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(211579..211581,211651..211653)
/gene="mutM"
/locus_tag="BARCL_0191"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 211714..212010
/gene="mutM"
/locus_tag="BARCL_0191"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 212068..212154
/gene="mutM"
/locus_tag="BARCL_0191"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene 212233..213648
/locus_tag="BARCL_0192"
/db_xref="GeneID:10138332"
CDS 212233..213648
/locus_tag="BARCL_0192"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_004158463.1"
/db_xref="GI:319898370"
/db_xref="GeneID:10138332"
/translation="MLNKVLEHLDRNLEKSLEHLFSLLRFQSISTDPKYKDECRKTAD
WLVEDLKSIGFTASRRDTPGHPIVVGHHPGPSDDCLHVLFYGHYDVQPVDPLNLWEDN
PFEPSLKEQNGNKIICARGASDDKGQLMTFIEACRAFKEETKQLPVKVTILLEGEEES
GSSSLIPFLKANIDEFKADCALVCDTSMWDANTPSISVSLRGILGEEIIVTAANCDLH
SGYFGGAAANPIRILAKILAGLHDENGRVTLPEFYDGVEETPLQILQSWDKLCCNAET
FLGSIGLSISAGEKGRSLLEQVWARPTAEINGISGGYEGEGFKTVIPAQAYAKISFRL
VHKQNPEKIRQAFRDYVRFLVPADCTVAFKEHGASKAIQLPYDSPFIQAAQDALFQEW
KTPALLTAMGGSIPIVEDFQSIFNMETILVGFALADDRIHSPNEKYNLKSFHKGQRSW
VRILAALANRRINGRDSCSSR"
misc_feature 212233..213612
/locus_tag="BARCL_0192"
/note="hypothetical protein; Validated; Region: PRK09104"
/db_xref="CDD:181650"
misc_feature 212281..213603
/locus_tag="BARCL_0192"
/note="Uncharacterized M20 Dipeptidases; Region:
M20_dipept_like_3; cd05680"
/db_xref="CDD:193555"
misc_feature order(212491..212493,212602..212604,212704..212709,
212785..212787,213526..213528)
/locus_tag="BARCL_0192"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193555"
misc_feature order(212833..212835,212845..212847,212851..212853,
212863..212880,212884..212904,212920..212928,
212932..212934,212941..212946,212953..212955,
213031..213033,213112..213114,213121..213126,
213139..213162,213175..213198,213217..213219,
213223..213225,213229..213231,213436..213441,
213523..213534)
/locus_tag="BARCL_0192"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193555"
gene 213659..214240
/gene="rnd"
/locus_tag="BARCL_0193"
/db_xref="GeneID:10137347"
CDS 213659..214240
/gene="rnd"
/locus_tag="BARCL_0193"
/EC_number="3.1.26.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Ribonuclease D"
/protein_id="YP_004158464.1"
/db_xref="GI:319898371"
/db_xref="GeneID:10137347"
/translation="MDNYCVNSIAIDTETLGLKPHRDRLCVVQLSSGDGTADIIQVAK
GQNRAPNLVALLEDKAITKIFHFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDR
HGLKEICSELLNINISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKNIFEERLKRE
EREDIAKACFQFLPVRAKLDLLGWSEVDIFAHV"
misc_feature 213683..>214225
/gene="rnd"
/locus_tag="BARCL_0193"
/note="Ribonuclease D [Translation, ribosomal structure
and biogenesis]; Region: Rnd; COG0349"
/db_xref="CDD:30697"
misc_feature 213683..214180
/gene="rnd"
/locus_tag="BARCL_0193"
/note="DEDDy 3'-5' exonuclease domain of Ribonuclease D
and similar proteins; Region: RNaseD_exo; cd06142"
/db_xref="CDD:176654"
misc_feature order(213692..213703,213854..213859,213863..213871,
213968..213973,214070..214072,214082..214084)
/gene="rnd"
/locus_tag="BARCL_0193"
/note="putative active site [active]"
/db_xref="CDD:176654"
misc_feature order(213692..213694,213698..213700,213869..213871,
214070..214072,214082..214084)
/gene="rnd"
/locus_tag="BARCL_0193"
/note="catalytic site [active]"
/db_xref="CDD:176654"
misc_feature order(213695..213703,213854..213859,213863..213868,
213968..213973,214070..214072,214082..214084)
/gene="rnd"
/locus_tag="BARCL_0193"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176654"
gene 214874..215170
/locus_tag="BARCL_0194"
/db_xref="GeneID:10138482"
CDS 214874..215170
/locus_tag="BARCL_0194"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158465.1"
/db_xref="GI:319898372"
/db_xref="GeneID:10138482"
/translation="MNMKYLVAVLGFTIITVSTVRGSGFKEEVPIIDSTSYVSQYNKD
FLKDSVLDDGRIFYSEWKEITEPIRVTFVSGNSRNSKDKKKKGRPKFSRGPMSF"
gene complement(215167..215310)
/locus_tag="BARCL_0195"
/db_xref="GeneID:10137348"
CDS complement(215167..215310)
/locus_tag="BARCL_0195"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158466.1"
/db_xref="GI:319898373"
/db_xref="GeneID:10137348"
/translation="MNIINHILNYIQLSKILSPSPLFSLTRNKINLPHPVIAKNIHAV
IID"
gene 215539..216417
/gene="pap"
/locus_tag="BARCL_0196"
/db_xref="GeneID:10137349"
CDS 215539..216417
/gene="pap"
/locus_tag="BARCL_0196"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158467.1"
/db_xref="GI:319898374"
/db_xref="GeneID:10137349"
/translation="MNMKCLMTASVVALMTAYAAQAADITVPQETGETIVVAPAFSWT
GFYVGGQIGGFSSKTSFSSRDGDDSKKWLPLHKDLWSKPSGFTGGFYTGSNVDLGNGL
ILGVDTDVIWSGRKDEKTHEVTVELEDKDKNKHQEKSVSRSPVVFADGEEKEVEITKY
GHTLKEKWAGATRIRIGFAADRIMPYVAGGVAYTQLQDSFSTSVSRQKVSGAKAERAD
KEPSAEPNTVNTVDESKTMIGYTLGAGVDFAMTDNVVLRAEYRYSDFGKKKLHNDKLE
VNYKANDFRVGVAYKF"
misc_feature 215545..216414
/gene="pap"
/locus_tag="BARCL_0196"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 216561..217427
/gene="hbpE"
/locus_tag="BARCL_0197"
/db_xref="GeneID:10138373"
CDS 216561..217427
/gene="hbpE"
/locus_tag="BARCL_0197"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Hemin-binding protein E"
/protein_id="YP_004158468.1"
/db_xref="GI:319898375"
/db_xref="GeneID:10138373"
/translation="MNVTRLMITSIWIFVLASMVQAADIMIPYQQQSHQPAPMIVSSD
FSWTGFYFGGQVGGFSSKSTVRGRRNSDAEWESLEPKYLPKLSGVIGGVYAGSNVNFG
NGLILGIDTDMAWSGKKDTKIIHREEQNEETVEEESTRRQENTRNNNSRVERSVQVCA
VAEEGSNPVSSSHTLKEKWVGATRVRIGFAVDRVMPYVSGGVAYTQLQDLLTIRKEGK
ELPITRNVIDDTKVFVGYTFGGGIDFAMAKSVILRAEYRYSDFGKKKFAKDKMEIGYK
TNDFRVGVAYKF"
misc_feature <217014..217424
/gene="hbpE"
/locus_tag="BARCL_0197"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 217579..218478
/gene="hbpE"
/locus_tag="BARCL_0198"
/db_xref="GeneID:10138212"
CDS 217579..218478
/gene="hbpE"
/locus_tag="BARCL_0198"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Hemin binding protein E"
/protein_id="YP_004158469.1"
/db_xref="GI:319898376"
/db_xref="GeneID:10138212"
/translation="MNIKSFLATFAIASSVSISAVQASDSILFQESRSPAASGFSWTG
FYIGGQAGGFSSNVTANALDVDIPLSSDRNDGVDRWTPVDKKYLPQLFGMRGGIYAGS
NINLSNNLVVGVDTDMMWSGQKDTKTIIISDDLVPTYRTGSGGSSNTEQGRERIIISP
FSPKNLGRAMYQHVARSGDAAGQYIIFNHSLKEKWTGATRVRIGFAADRIMPYVAGGI
SYVELQDTLSVVIGTEENKADESKTMIGYTFGGGVDFALTNSIIVRTEYRYSDFGKKK
FAKEEVDLSYKTNNFRVGVAYKF"
misc_feature <218140..218475
/gene="hbpE"
/locus_tag="BARCL_0198"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 218728..221643
/gene="ileS"
/locus_tag="BARCL_0199"
/db_xref="GeneID:10138213"
CDS 218728..221643
/gene="ileS"
/locus_tag="BARCL_0199"
/EC_number="6.1.1.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_004158470.1"
/db_xref="GI:319898377"
/db_xref="GeneID:10138213"
/translation="MSVKNESVDYSKTLYLPKTNFPMRAGLPQKELELITRWEEIDLY
TQLRQQAKDRPLYILHDGPPYANGNIHIGHALNKVLKDVIVRSFQMRGFNANYVPGWD
CHGLPIEWKIEEKYRAKGKNKDDVPLSEFRQECRDFAQSWITIQSEEFKRLGIVGDFK
NPYTTMAFHAEARIASELMKFVMSDQLYCGSKPVMWSVVERTALAEAEIEYHDHESDV
IWVKFPILESRDHDLDGACVVIWTTTPWTIPGNRAVSYSSQISYGVYLVESAENDFGS
QVGEKLLFADVLVESCAEKAKIILKRLRSVSADELKTLILSHPFKGLAGGYNYKIAML
DGSHVTDNAGTGFVHTAPSHGREDFEIWNAYKSVLEQAGIDSAIPFPVDDAGFYTKDA
PGFGPDREEGAIRVIDDNGKMGNANKEVINALIKVGLLFARGRLKHSYPHSWRSKKPV
IFRNTPQWFIAMDKDLGDGSTLRSRALEAVMMTRFVPSSAQNRLASMITDRPDWVLSR
QRAWGVPICIFVNEDGLILKDEQVNKRILQAFEAEGADAWFAEGARERFLGERVHETW
KQVYDILDVWFDSGASHSFVLEDRADLKWPADIYFEGSDQHRGWFQSSLLESCGTRAC
SPYKAVVTHGFTLDENGKKMSKSLGNTIMPQDIIKTSGADIFRLWVMTTDYSEDQRLG
KKILQTNVDSYRKLRNAIRWMLGILTYDEGEEIPYCVLPDLEKFILHRLYELDRLINQ
SYDEFDFKKIMRALLDFSIIELSAFYFDIRKDTLYCDPPSSGKRKASLQVIREIFDRM
VTWLAPMLPFTMEEAWLERYPESCSVHLQQFRPALAEWKNELLAERWKKVRQVRKVVT
GALEIERADRRIGSSLEAAPVVFISNPVLLESLENLDMAEICITSALTIIQDIPPSDA
FILNDVEGVGICSHKAVGTKCARSWRYTQDVGSDPDYPDVSARDAAALRELQALGKV"
misc_feature 218728..221637
/gene="ileS"
/locus_tag="BARCL_0199"
/note="isoleucyl-tRNA synthetase; Provisional; Region:
ileS; PRK13804"
/db_xref="CDD:184337"
misc_feature 218890..>219330
/gene="ileS"
/locus_tag="BARCL_0199"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 218938..218949
/gene="ileS"
/locus_tag="BARCL_0199"
/note="active site"
/db_xref="CDD:173912"
misc_feature 218938..218949
/gene="ileS"
/locus_tag="BARCL_0199"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature order(218938..218940,218947..218949)
/gene="ileS"
/locus_tag="BARCL_0199"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature <220015..220770
/gene="ileS"
/locus_tag="BARCL_0199"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature order(220204..220206,220453..220455,220462..220464,
220531..220545,220549..220551,220555..220557,
220624..220638,220648..220665,220759..220761)
/gene="ileS"
/locus_tag="BARCL_0199"
/note="active site"
/db_xref="CDD:173909"
misc_feature 220654..220668
/gene="ileS"
/locus_tag="BARCL_0199"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature 220768..221256
/gene="ileS"
/locus_tag="BARCL_0199"
/note="Anticodon-binding domain of bacterial and
eukaryotic mitochondrial isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_BEm; cd07960"
/db_xref="CDD:153414"
misc_feature order(220777..220779,220789..220791,220798..220800,
220810..220812,220819..220821,220828..220833,
220969..220971,220978..220983,220990..220995,
221002..221004,221017..221019,221029..221031,
221038..221040)
/gene="ileS"
/locus_tag="BARCL_0199"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153414"
misc_feature order(220819..220821,220828..220830)
/gene="ileS"
/locus_tag="BARCL_0199"
/note="anticodon binding site; other site"
/db_xref="CDD:153414"
gene 221901..222431
/locus_tag="BARCL_0200"
/db_xref="GeneID:10138241"
CDS 221901..222431
/locus_tag="BARCL_0200"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158471.1"
/db_xref="GI:319898378"
/db_xref="GeneID:10138241"
/translation="MLAGCNLSAPTYGTDKTASLQFVDDITNLASLRSKNKNNQLVMK
QRPQLVFPEPNARVVLPPPQVDITEIDSYDEMEVSEQSQKSLQGGVGANRANSNDKVS
LSSDKKVVTRGRINIDDSEGIVQFNEKQQREEYLRRRQEADGGNANYRRYLSEPPLIY
RQPAVTASAGQKDKLE"
gene complement(222552..223004)
/gene="codA"
/locus_tag="BARCL_0201"
/db_xref="GeneID:10137350"
CDS complement(222552..223004)
/gene="codA"
/locus_tag="BARCL_0201"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cytosine/adenosine deaminase"
/protein_id="YP_004158472.1"
/db_xref="GI:319898379"
/db_xref="GeneID:10137350"
/translation="MRLTPMEIALLEAQSAKKQAEIPVGAVITHGKTIIARAGNYIKT
PYDPTGHAEMRVIRIACQIFKSERIPECDLYVTLEPCAMCAAAISFARIRNLYYATQD
SKGGAIEHGPRFYQQPTCHHRPNVYSGFKEREATLLLKDFFSQKRRKK"
misc_feature complement(222681..222989)
/gene="codA"
/locus_tag="BARCL_0201"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature complement(order(222753..222755,222762..222764,
222846..222854,222885..222887,222933..222935))
/gene="codA"
/locus_tag="BARCL_0201"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature complement(order(222732..222737,222744..222749,
222756..222761,222831..222833,222843..222845,
222858..222860))
/gene="codA"
/locus_tag="BARCL_0201"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature complement(order(222753..222755,222762..222767,
222846..222854))
/gene="codA"
/locus_tag="BARCL_0201"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 223177..224667
/locus_tag="BARCL_0202"
/db_xref="GeneID:10138039"
CDS 223177..224667
/locus_tag="BARCL_0202"
/EC_number="5.4.99.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="pseudouridine synthase"
/protein_id="YP_004158473.1"
/db_xref="GI:319898380"
/db_xref="GeneID:10138039"
/translation="MMNDCTPPSFENKRHSARNKFSIRFEKDQSEKKMSEKSESERIA
KRLARAGVASRRDAEMMIFAGRIVVNGAIIATPVFNVTRSDVITVDGKPLPPIERTRL
WLYHKPVGFVTTNRDPQGRPTVFDNLPKDMPRVLSVGRLDMNTEGLLLLTNDGGLARV
LELPLTGWVRKYRVRAHGKVKQSALQDLKNGIAVNGIFYGSIEASIEREQGSNVWLSV
ALREGKNREIKNVLGALGLSVNRLIRVSYGPFQLSDLKEGAVRELKGRMLRDQLGERL
ILQANADFNAPIIKPFSNSAVIEKQNSTKPPVMKNSWIVSRKESILRGKKGRFPGHSQ
VRLSKKFDEKLRVKDQNKSGKEERVFLRSRCSNVWMAPGACPQIARKKPSSVADNHYG
RKINWVGKRFTDRGKEKRSERRVEKDNIDFSKKRSKTPYIESSIIGKKDQLFKKERKV
VKDDHDKHFFNSKWKSRSFDNNMKQSKRYNNSARMSQRSGGSRESY"
misc_feature 223300..223965
/locus_tag="BARCL_0202"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature 223300..223464
/locus_tag="BARCL_0202"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(223300..223302,223333..223338,223342..223347,
223351..223356,223363..223368,223372..223374,
223393..223416,223420..223422)
/locus_tag="BARCL_0202"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 223477..223968
/locus_tag="BARCL_0202"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:211430"
misc_feature order(223591..223602,223861..223863)
/locus_tag="BARCL_0202"
/note="active site"
/db_xref="CDD:211324"
gene 224690..225211
/locus_tag="BARCL_0203"
/db_xref="GeneID:10137351"
CDS 224690..225211
/locus_tag="BARCL_0203"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology; Product type pe : enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158474.1"
/db_xref="GI:319898381"
/db_xref="GeneID:10137351"
/translation="MSKPLDRSIRPTSDRTRESLFNILTSQEENFWSDKRVLDLFAGT
GALGIEALSRGAKAAVFVENSIEGRSLIQKNIETLGLQGVGRILRRDATKLGNIGTML
AFDIIFADPPYGCSLGEKAFIQAFKGKWAKTETFFILEEAKEAIINLPDPFYLEDERF
YSDTAIRIYKLQK"
misc_feature 224795..225070
/locus_tag="BARCL_0203"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(224807..224827,224876..224881,224957..224965,
225017..225019)
/locus_tag="BARCL_0203"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 225644..226477
/locus_tag="BARCL_0204"
/db_xref="GeneID:10137352"
CDS 225644..226477
/locus_tag="BARCL_0204"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="patatin"
/protein_id="YP_004158475.1"
/db_xref="GI:319898382"
/db_xref="GeneID:10137352"
/translation="MKIGLAFGGGGARGLGHLPVIGALEDLGLKPNAIAGSSIGSIVG
AGVASGMTETDWKEYCLSTFSNSNDILKRLWSLMPTSWKEFWECSLHLFQFNLELILE
NFLPLNFPRDFCALEIPFCAVASNLKTAEMVVIQEGDLRSALAASSAIPGLFKPVLRN
HDFLIDGAVSNPVPFDCFTEPIDLSIGVDVTGLPIIGCKNGNLSVSESLIAAGIVGQR
ALVRTRLQCAKLDLLLCPPVDGIQILNFFEVKEILQRVGPFREKAKRQISELVERKIV
H"
misc_feature 225692..226471
/locus_tag="BARCL_0204"
/note="Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only]; Region:
RssA; COG1752"
/db_xref="CDD:31938"
misc_feature 225692..226213
/locus_tag="BARCL_0204"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
misc_feature 225749..225763
/locus_tag="BARCL_0204"
/note="nucleophile elbow; other site"
/db_xref="CDD:132836"
gene 226572..227906
/gene="pmbA"
/locus_tag="BARCL_0205"
/db_xref="GeneID:10137353"
CDS 226572..227906
/gene="pmbA"
/locus_tag="BARCL_0205"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="PmbA protein"
/protein_id="YP_004158476.1"
/db_xref="GI:319898383"
/db_xref="GeneID:10137353"
/translation="MKMNKKQLDKASSLVEAAKRSGADAADAVVIHSNSVCVAVRLGK
VESTDALESDDFTLRVFVGKKVASVSANFVVDPQELAERAIAMAKVSPDSLFEGLADK
ECLVTHPKDLDLFDNFIPQSHFLTEDALQMEAAALDVKGVSNSGGAATAYGKSGFVLV
NSDGFYGSYNSSYFSRSCSALAGEGTEMERDYDYTTALHFSDLESGDTIGRNAGLGAV
RRLGAVRAETGVVSVVFDPRVARGIAGHIASMVNGASIARKTSVLQNLKGERVMKSGV
NVVDQPLRLRGNASRPFDGEGVEGHTLNIIENGVLKNWLLSSSSARELGLKTNGRGVR
SASLVQPASTNFSIEPGLVSPHDMIKSMQNGFYVTELFGHGVDFVTGQYSRGASGFWI
ENGEITYPVSEVTLGSDLLHMLAHLTPANDIDRRYGTSAPTLLIEGMTLAGK"
misc_feature 226584..227903
/gene="pmbA"
/locus_tag="BARCL_0205"
/note="Predicted Zn-dependent proteases and their
inactivated homologs [General function prediction only];
Region: TldD; cl00398"
/db_xref="CDD:193802"
misc_feature 226659..227513
/gene="pmbA"
/locus_tag="BARCL_0205"
/note="Putative modulator of DNA gyrase; Region:
PmbA_TldD; pfam01523"
/db_xref="CDD:190021"
gene 227935..228696
/locus_tag="BARCL_0206"
/db_xref="GeneID:10138408"
CDS 227935..228696
/locus_tag="BARCL_0206"
/EC_number="3.1.3.25"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="inositol monophosphatase"
/protein_id="YP_004158477.1"
/db_xref="GI:319898384"
/db_xref="GeneID:10138408"
/translation="MLDVCWEAGDLAMKYFGCELDVWFKDGNSPVSEADVAVDVFLKE
RLLSARPNYGWISEETEDNRGQATYKRCFVVDPIDGTRGFLSGSIDWCISVAIIEKGR
PVVGVLQCPAKGDIYAAMTGKGATLNGVRMPLLRSKTNQKYRVSIDQSIAQKLPYDFC
NRISFFRYIPSLAYRVILVAQGKIDIVLVRPNCHDWDIAAADLVLQECGGRFMSLKAP
FISYGIESSQDSFLVAGENNCCQNMVNIVRQAKLV"
misc_feature 227935..228636
/locus_tag="BARCL_0206"
/note="CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate
(PAPS) 3'-phosphatase, is a bacterial member of the
inositol monophosphatase family. It has been proposed that
CysQ helps control intracellular levels of PAPS, which is
an intermediate in cysteine...; Region: CysQ; cd01638"
/db_xref="CDD:30136"
misc_feature order(228037..228039,228106..228111,228160..228177,
228181..228183,228376..228378,228385..228387,
228457..228459,228493..228495,228520..228525)
/locus_tag="BARCL_0206"
/note="active site"
/db_xref="CDD:30136"
gene 228741..228986
/locus_tag="BARCL_0207"
/db_xref="GeneID:10137354"
CDS 228741..228986
/locus_tag="BARCL_0207"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158478.1"
/db_xref="GI:319898385"
/db_xref="GeneID:10137354"
/translation="MAEVNEKRQLLHLVFGGELKNLSDNQFKDLSNLDVVGIFPDYQS
AQEAWRTKAQSSVDNALQRYYVVPLHQFLDHETSNVS"
misc_feature 228762..228962
/locus_tag="BARCL_0207"
/note="Domain of unknown function (DUF4170); Region:
DUF4170; pfam13773"
/db_xref="CDD:205946"
gene 229134..229817
/locus_tag="BARCL_0208"
/db_xref="GeneID:10137355"
CDS 229134..229817
/locus_tag="BARCL_0208"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158479.1"
/db_xref="GI:319898386"
/db_xref="GeneID:10137355"
/translation="MKTWFVKIFVVRILANYLRFVYWTNPRLKSSDDIRKIYNAYNPF
IITFWHGRHIMGPFLRSQGEEVIAMFSRSADAEINAQLAQKLGLGIVRGSGGRGKTHH
VHKGGARALLTLKNALKSGKTVAMIADIACGKARESGKGIILLAKLSGRPIIPCVYAF
SREKILEKTWDKTAIPLPFGRSIVLTGEAFFVPKDADDSLLEEKRIQLTDVMNRLTNE
AYSYLKTRK"
misc_feature 229185..229775
/locus_tag="BARCL_0208"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature order(229281..229283,229290..229292,229296..229298,
229341..229352,229521..229529)
/locus_tag="BARCL_0208"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene 229828..231138
/gene="kdtA"
/locus_tag="BARCL_0209"
/db_xref="GeneID:10137356"
CDS 229828..231138
/gene="kdtA"
/locus_tag="BARCL_0209"
/EC_number="2.-.-.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_004158480.1"
/db_xref="GI:319898387"
/db_xref="GeneID:10137356"
/translation="MMELKARVALSIYRIVGFCLHPVVPFYLFFRAMRGKEERGRQKE
RLGKSQKVRPQSPLIWFHAASVGETIALLPLINYILSLKIQVLLTTCTVTSSTLVKKH
FGNRLIHQYAPLDLELAVRHFIAHWKPDLALICESEIWPLRIKELAKMRIPQILVNAR
MSEQSFKAWHKRLFLAKHIFKHIDVVIGQNETDVTYYHTLGVKSVALSGNLKAEVCPV
EDQELLAHYYNAIGNRPVWAAVSTHEGEERIAFEVHRILKSHLPDLLTIVVPRHPERS
KDIIKAFGHEDLRYVLRSSNTVPDMDTDILLGDTIGEMGLFLRLSKVAFIGKSLCNYG
GHNPLELALLGVAILTGPHIANFQNTFERFLSCDAAYIVEDTMQLAIQVNKFLTNETL
RQQVVDKAYEVATSMAGALECTLKVLDPFLQPLVIQTGLRQCQK"
misc_feature 229852..231105
/gene="kdtA"
/locus_tag="BARCL_0209"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature 229984..230463
/gene="kdtA"
/locus_tag="BARCL_0209"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
gene 231141..232163
/gene="lpxK"
/locus_tag="BARCL_0210"
/db_xref="GeneID:10138256"
CDS 231141..232163
/gene="lpxK"
/locus_tag="BARCL_0210"
/EC_number="2.7.1.130"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_004158481.1"
/db_xref="GI:319898388"
/db_xref="GeneID:10138256"
/translation="MHICSPRFWWKNKSLWRFLLAPISEVYGYFARCRMEREPLAIDL
PVLCVGNFTLGGAGKTPVVIAFAQVAKELGLIPGIISRGYGGRVKKVHLVDIKRDNAR
DVGDESLLLARHAFVAISPDRYAAAQRLKEKGCNFILMDDGFQSRRLYMDYTLLVVDA
MRGFGNKAVFPAGPLRAPLKTQLSLMDSVLVIGCLDESDDVALFVASTGKPLHYAHLK
SLVDDEVAGKFFLAFAGIGNPDKFFKSIKEMSGHVVQTYSYPDHYFFTATDLKNLARK
AKTHNLWLTTTAKDYIRIQANDLHKSLEKLIIFDVKVDFVQGDFCRMLLEESIARFKK
RNIAFN"
misc_feature 231141..232148
/gene="lpxK"
/locus_tag="BARCL_0210"
/note="Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope
biogenesis, outer membrane]; Region: LpxK; COG1663"
/db_xref="CDD:31849"
misc_feature 231156..232118
/gene="lpxK"
/locus_tag="BARCL_0210"
/note="tetraacyldisaccharide 4'-kinase; Reviewed; Region:
lpxK; PRK00652"
/db_xref="CDD:179082"
gene complement(232217..232450)
/locus_tag="BARCL_0211"
/db_xref="GeneID:10138286"
CDS complement(232217..232450)
/locus_tag="BARCL_0211"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158482.1"
/db_xref="GI:319898389"
/db_xref="GeneID:10138286"
/translation="MFSNNECEATIHYFNNSYKIIKYGTYTVCAVSGQKIPLDDLKYW
NHQRQEAYASCELSYQRELECNPHLSQLLKNIK"
misc_feature complement(232268..232393)
/locus_tag="BARCL_0211"
/note="Uncharacterized protein conserved in bacteria
(DUF2093); Region: DUF2093; pfam09866"
/db_xref="CDD:150527"
gene complement(232571..234409)
/gene="mutL"
/locus_tag="BARCL_0212"
/db_xref="GeneID:10137357"
CDS complement(232571..234409)
/gene="mutL"
/locus_tag="BARCL_0212"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutL"
/protein_id="YP_004158483.1"
/db_xref="GI:319898390"
/db_xref="GeneID:10137357"
/translation="MIIRHLSETIINQIAAGEVIERPTNVVKELIENAIDAGANRIEI
VIANGGKNLIKVSDNGCGIPEDQLTLAISRHCTSKITDDVHNICFLGFRGEALPSIGS
VSKLKLTSRTQNSDSAAEIIVTAGKIEGPKPSAANPGTIVEVRDLFFVTPARLKFMKS
DRAETSSIIDTIKRIAIAFPHIRFSLAGIDRASMEFPAMEQNTQGQLQRITQIMGKEF
ASNSLILDAKRESVHLTGFAGLPSFNRSNSLHQFAYVNGRPVRDKLLWGAIRGAYADV
IARDRHAIAILFINLPPTDVDVNVHPAKMDVRFRDPSLIRGLIIGAIREALHQTGVRP
TSTGSEAMLAAFRTQSLETVKTHQTSSYGARPCHLEPELTSIFHKPLNINSSIDLQED
TIPIMECLSRPSGDTRATINVSTSEELHYPLGAARAQIHKNYIVSQTQNSLIIVDQHA
AHERLVYEALKNALYSKPLPSQLLLIPEIVELSEEDATCLLSHKDALKKFGLGIESFG
IGAIAVHETPSMLGEINIQALIKDLADEAAEYDTIDNLKGMLDYVAATMACHSSICSG
RLLHPEEMNALLRQIEATPNSGTCNHGRPTYIELKLADIERLFGRK"
misc_feature complement(232577..234409)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="DNA mismatch repair protein; Reviewed; Region:
mutL; PRK00095"
/db_xref="CDD:178860"
misc_feature complement(<234092..234334)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(234119..234130,234221..234226,
234230..234232,234236..234238,234242..234244,
234302..234304,234311..234313,234323..234325))
/gene="mutL"
/locus_tag="BARCL_0212"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(234311..234313)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(234122..234124,234128..234130,
234224..234226,234230..234232))
/gene="mutL"
/locus_tag="BARCL_0212"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(233429..233794)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="MutL_Trans_MutL: transducer domain, having a
ribosomal S5 domain 2-like fold, found in proteins similar
to Escherichia coli MutL. EcMutL belongs to the DNA
mismatch repair (MutL/MLH1/PMS2) family. This transducer
domain is homologous to the second...; Region:
MutL_Trans_MutL; cd03482"
/db_xref="CDD:48470"
misc_feature complement(233498..233500)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48470"
misc_feature complement(232703..233146)
/gene="mutL"
/locus_tag="BARCL_0212"
/note="MutL C terminal dimerisation domain; Region:
MutL_C; pfam08676"
/db_xref="CDD:192121"
gene 234720..235823
/gene="dcd"
/locus_tag="BARCL_0213"
/db_xref="GeneID:10138331"
CDS 234720..235823
/gene="dcd"
/locus_tag="BARCL_0213"
/EC_number="3.5.4.13"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="2'-deoxycytidine 5'-triphosphate deaminase"
/protein_id="YP_004158484.1"
/db_xref="GI:319898391"
/db_xref="GeneID:10138331"
/translation="MEGKTMMRMNGILADSDIQTLVNNRIVNAICSLDKDQIQPASLD
LRLGDKAYRIRASFMPGPGVKVSDKLERLKLHEFDLQDGAVLETGCVYIVPLLENLAL
PKVLSAVANPKSSTGRLDVFTRVISDYAQEFDKICMGYHGPLYLEISPRTFPILVRTG
SRLSQLRFRKGHSYLKEVELYDLHKNEMLVSDDNPNINDDGIGISINLEGNENGLMGY
RSKRHTGVIDVDKSAVAHILDFWEPIYDHGTKEMVLDPHEFYILVSREAIHVPPFYAA
EMKPFDPLVGEFRVHYAGFFDPGFGNMKISRKGARAVLEVRNHEVPFILEHGQIIGRL
VYEHMLNRPVKLYGDDIGSHYQEQGLKLSKHFK"
misc_feature 234729..235820
/gene="dcd"
/locus_tag="BARCL_0213"
/note="2'-deoxycytidine 5'-triphosphate deaminase;
Provisional; Region: PRK07559"
/db_xref="CDD:181028"
misc_feature 234753..235238
/gene="dcd"
/locus_tag="BARCL_0213"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cl00493"
/db_xref="CDD:207077"
misc_feature order(234972..234974,234987..234992,234996..234998,
235044..235046,235050..235067,235080..235088,
235122..235124,235131..235133,235152..235154,
235158..235160,235164..235166,235170..235172,
235179..235193,235200..235202,235212..235214)
/gene="dcd"
/locus_tag="BARCL_0213"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(235056..235064,235122..235130,235137..235139,
235149..235154)
/gene="dcd"
/locus_tag="BARCL_0213"
/note="active site"
/db_xref="CDD:143638"
misc_feature 235155..235820
/gene="dcd"
/locus_tag="BARCL_0213"
/note="Deoxycytidine deaminase [Nucleotide transport and
metabolism]; Region: Dcd; COG0717"
/db_xref="CDD:31061"
misc_feature order(235476..235478,235491..235496,235500..235502,
235548..235550,235554..235571,235581..235589,
235602..235604,235611..235613,235629..235631,
235662..235664,235668..235670,235674..235676,
235683..235697,235704..235706,235716..235718)
/gene="dcd"
/locus_tag="BARCL_0213"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(235560..235568,235602..235610,235617..235619,
235626..235631)
/gene="dcd"
/locus_tag="BARCL_0213"
/note="active site"
/db_xref="CDD:143638"
gene 235909..237060
/gene="lldD"
/locus_tag="BARCL_0214"
/db_xref="GeneID:10138064"
CDS 235909..237060
/gene="lldD"
/locus_tag="BARCL_0214"
/EC_number="1.1.2.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="L-lactate dehydrogenase"
/protein_id="YP_004158485.1"
/db_xref="GI:319898392"
/db_xref="GeneID:10138064"
/translation="MIISSTFDYRKAAKCRLPSFLFHYIDGGAYAEETMRRNCTDLQE
LALRQRILKQIGDVDLSTEILGQKLGMPIVLAPVGLTGMYARRGEVKAARAAVAKGIP
FTLSSVSVCPISEVQAAVGKEFWFQLYVLKDRGFMRDALERSWAAGVRTLVFTVDMPV
PGARYRDAHSGMSGPYAGLRRIVQAVFHPHWAWNVGIMGHPHDLGNVSAYLKKKTTLK
DYIGWLGANFDPSISWGDLQWIRDFWKGKMILKGILDPEDAREAVRFGADGIVVSNHG
GRQLDGVLSTARALPKIADVIKGDLTILVDSGIRSGLDVVRMIAQGADAVMIGRAFIY
ALAAAGEKGVTYLLELFAQEMRVAMTLTGVRTIKEITRENLVSPESLQG"
misc_feature 235909..237042
/gene="lldD"
/locus_tag="BARCL_0214"
/note="L-lactate dehydrogenase; Provisional; Region: lldD;
PRK11197"
/db_xref="CDD:183033"
misc_feature 235930..237033
/gene="lldD"
/locus_tag="BARCL_0214"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
misc_feature order(236827..236832,236893..236898)
/gene="lldD"
/locus_tag="BARCL_0214"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:73384"
gene complement(237347..237901)
/locus_tag="BARCL_0215"
/db_xref="GeneID:10138274"
CDS complement(237347..237901)
/locus_tag="BARCL_0215"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="bioY family protein"
/protein_id="YP_004158486.1"
/db_xref="GI:319898393"
/db_xref="GeneID:10138274"
/translation="MNTKDLTYIALFAALYAVLGFFPPIFLPFFLGLPITAQSMGPML
AGSILGAKRGAAASALFLFLVAIGLPLLAGGRGGISVFLGAGGGYMIGYPFAAFFIGL
MVKSFWRQLNFVKLVIINSVGGIGIIYLFGIFWIVYISKISLLAALTMSLGFMIGDFL
KVLVASFIALTVKKSVPLITPSKK"
misc_feature complement(237374..237796)
/locus_tag="BARCL_0215"
/note="BioY family; Region: BioY; pfam02632"
/db_xref="CDD:145668"
gene complement(237912..238247)
/locus_tag="BARCL_0216"
/db_xref="GeneID:10137358"
CDS complement(237912..238247)
/locus_tag="BARCL_0216"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158487.1"
/db_xref="GI:319898394"
/db_xref="GeneID:10137358"
/translation="MRFIILISLASLISLTTKVSDMVASIEVGFRSFQCLGINPSKLS
MVLSMAIRFIPVISEKFNAICEAQRARGLDINIIALAIPLIIRTIRIASEVAEALDAR
SYDSDDKTL"
misc_feature complement(<238026..>238202)
/locus_tag="BARCL_0216"
/note="ABC-type cobalt transport system, permease
component CbiQ and related transporters [Inorganic ion
transport and metabolism]; Region: CbiQ; COG0619"
/db_xref="CDD:30964"
gene 238345..238488
/locus_tag="BARCL_0217"
/db_xref="GeneID:10137359"
CDS 238345..238488
/locus_tag="BARCL_0217"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158488.1"
/db_xref="GI:319898395"
/db_xref="GeneID:10137359"
/translation="MLKGILAILYNEDMNNKKSKKADIDETIKIIVPHRIRNNNLVPG
LSR"
gene complement(238520..239197)
/gene="cbiO"
/locus_tag="BARCL_0218"
/db_xref="GeneID:10137360"
CDS complement(238520..239197)
/gene="cbiO"
/locus_tag="BARCL_0218"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004158489.1"
/db_xref="GI:319898396"
/db_xref="GeneID:10137360"
/translation="MGIKFDKVTQIFDDLCVLKNITVNLTEKRIAIIGANGSGKSTFV
RLINGLQLPSSGSVNVDGLDTKHNAKAIRRKVGFVFQNPDNQIVLPLVEEDLSFGLKN
LKLSKDEIRKRVDEVLQYYDLQAFKNHAVHLLSGGQKQLVAISSVVAMRPNYIVFDEP
TTLLDLQNKRRVTQVIKELPQTTIVVSHDLEFLKEFDRILVFDKGEIAVDDVPLVAIK
EYIRRMS"
misc_feature complement(238538..239197)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism]; Region: CbiO;
COG1122"
/db_xref="CDD:31319"
misc_feature complement(238580..239149)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="Domain I of the ABC component of a cobalt transport
family found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of many
enzymes and must be transported into cells in appropriate
amounts when needed. This ABC...; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:72984"
misc_feature complement(239075..239098)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72984"
misc_feature complement(order(238634..238636,238721..238726,
238955..238957,239072..239080,239084..239089))
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72984"
misc_feature complement(238955..238966)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="Q-loop/lid; other site"
/db_xref="CDD:72984"
misc_feature complement(238769..238798)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72984"
misc_feature complement(238721..238738)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="Walker B; other site"
/db_xref="CDD:72984"
misc_feature complement(238703..238714)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="D-loop; other site"
/db_xref="CDD:72984"
misc_feature complement(238628..238648)
/gene="cbiO"
/locus_tag="BARCL_0218"
/note="H-loop/switch region; other site"
/db_xref="CDD:72984"
gene complement(239235..240668)
/gene="aroP"
/locus_tag="BARCL_0219"
/db_xref="GeneID:10138012"
CDS complement(239235..240668)
/gene="aroP"
/locus_tag="BARCL_0219"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aromatic amino acid transport protein"
/protein_id="YP_004158490.1"
/db_xref="GI:319898397"
/db_xref="GeneID:10138012"
/translation="MENVELKYNELKRGLKNRHVQMIALGGVIGTGLFYGSTEAIQLA
GPSTILAYLIGGFIIYLIMRILGEMSAEEPTSGAFSFFAYKYWGCLAGFITGWNYWFL
YILVGMTELTVIGFYLDHWILIDHWKSSLLVLLFVTLINLTNVRFYGEFEFGLALIKI
ISVIGMIVFGIFIIITGMNGSQASISYLWNHGGFFPYGAMGLVFATSILMFSFGGTEL
ISIAAGETSDPQKTIPTAIRKVMWRVVIFYIGSISVIMMISPWNMIKKNGSPFVTIFE
TIGIPAASHILNFVVIMAAISVYNSGIYSNGRILYSLAIQKNAPHIFSKLNATCVPYV
AILFSSICTATIIVINVLIPDNSFIRIMAITTVTAAITWAIIVIVHFKFRKAHKGQEK
SFVYAFGFYPYGNYLCLFFLALLFCIMFVSGFGKNGLITQLFEMIGIKVNFIESYIPT
QMPDMSLAVIIIPIWCLFLLLGYKLKR"
misc_feature complement(239238..240668)
/gene="aroP"
/locus_tag="BARCL_0219"
/note="Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism]; Region: AnsP;
COG1113"
/db_xref="CDD:31310"
gene 240851..241186
/locus_tag="BARCL_0220"
/db_xref="GeneID:10137992"
CDS 240851..241186
/locus_tag="BARCL_0220"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158491.1"
/db_xref="GI:319898398"
/db_xref="GeneID:10137992"
/translation="MFRPLVKLMIFIFVTLTCITLVVDGMRSVSASNLTINPFSKILA
VFLHTDINSLNQFICSIMPSLLSSTCIILINFPAWLIFGILAITFYILSYEPRKPFHK
ISYQEGEYI"
gene complement(241461..241664)
/gene="slyX"
/locus_tag="BARCL_0221"
/db_xref="GeneID:10137361"
CDS complement(241461..241664)
/gene="slyX"
/locus_tag="BARCL_0221"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158492.1"
/db_xref="GI:319898399"
/db_xref="GeneID:10137361"
/translation="MSHENKMIELEIKLAHQEKLIEELSCVVTDQWKSLDEMSKKLNA
LTKRLLELEERGFSEVPVERPPY"
misc_feature complement(241464..241664)
/gene="slyX"
/locus_tag="BARCL_0221"
/note="SlyX; Region: SlyX; cl01090"
/db_xref="CDD:186326"
gene 242136..242212
/locus_tag="BARCL_t02"
/db_xref="GeneID:10138576"
tRNA 242136..242212
/locus_tag="BARCL_t02"
/product="tRNA-Thr"
/db_xref="GeneID:10138576"
gene 242137..242212
/locus_tag="BARCL_tRNA2"
/db_xref="GeneID:10138721"
tRNA 242137..242212
/locus_tag="BARCL_tRNA2"
/product="tRNA-Thr"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138721"
gene 242729..243478
/locus_tag="BARCL_0222"
/db_xref="GeneID:10137922"
CDS 242729..243478
/locus_tag="BARCL_0222"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158493.1"
/db_xref="GI:319898400"
/db_xref="GeneID:10137922"
/translation="MKRNIVRLFRKPTEEVIATKSIKSIKSNSVQSREKIEGLLQSIS
GKPKILDNDLNMIYRSLALGERNEYDKRYMERIVQCLKVRLKEDYKLEDDSSLLKEID
NYVNAVRQEHSEQIATKSIKSIKSNSVQSREKIEGLLQSISGKPKILDNDLNMIYRSL
ALGERNEYDKRYMERIVQCLKVRLKEDYKLEDDSSLLKEIDNYVNAVRQEHSEQAVKI
HSRAKQGISVSANREYRDNRVENGRCNMLKI"
gene 244212..244346
/locus_tag="BARCL_0223"
/db_xref="GeneID:10137362"
CDS 244212..244346
/locus_tag="BARCL_0223"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158494.1"
/db_xref="GI:319898401"
/db_xref="GeneID:10137362"
/translation="MRYLEYEYIHSLVEERLFALVMFLHFCDLKSSLKKEKNLYISIH
"
gene complement(244343..244417)
/locus_tag="BARCL_0224"
/db_xref="GeneID:10137363"
CDS complement(244343..244417)
/locus_tag="BARCL_0224"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158495.1"
/db_xref="GI:319898402"
/db_xref="GeneID:10137363"
/translation="MVEQRTENPRVRGSNPRLGTAFYF"
gene complement(244357..244432)
/locus_tag="BARCL_tRNA41"
/db_xref="GeneID:10137364"
tRNA complement(244357..244432)
/locus_tag="BARCL_tRNA41"
/product="tRNA-Phe"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10137364"
gene 245141..246430
/gene="purA"
/locus_tag="BARCL_0225"
/db_xref="GeneID:10137946"
CDS 245141..246430
/gene="purA"
/locus_tag="BARCL_0225"
/EC_number="6.3.4.4"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_004158496.1"
/db_xref="GI:319898403"
/db_xref="GeneID:10137946"
/translation="MANVVVVGTQWGDEGKGKIVDWLSERADIVVRYQGGHNAGHTLV
IDGISYKLSLLPSGVVRGKLSIIGNGVVVDPHHFVAELKKLRAQGVKITSEILRIAEN
APLILSVHRDLDSARDNSVSSLIIGTTKRGIGPAYEDKVGRRSIRVMDLAEADTLMPK
IERLMEHHNALRRGMGAAEIDPQTLYDELMQVADEILPFMDCTWRLLNESYRMGRRIL
FEGAQGALLDNDFGTYPYVTSSNTIPGQAFTGSGLGLGSIHYVLGIAKAYTTRVGEGP
FPTEEMSQIGEFLGARGNEFGVVTGRKRRCGWFDAVLVRQMVIIGGVSGIALTKLDVF
DGLDEIKVCIGYELDGKRIDHLPSSMGAQARVRPIYGTLEGWKETTAHVSNWAELPAQ
AIKYVRYIEELIGVPVVLLSTSPERKDTILITDPFAD"
misc_feature 245147..246406
/gene="purA"
/locus_tag="BARCL_0225"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature 245147..246385
/gene="purA"
/locus_tag="BARCL_0225"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:73337"
misc_feature order(245177..245179,245183..245191,245258..245266,
245270..245272,246128..246130,246134..246136,
246380..246385)
/gene="purA"
/locus_tag="BARCL_0225"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:73337"
misc_feature order(245183..245185,245192..245194,245261..245263)
/gene="purA"
/locus_tag="BARCL_0225"
/note="ACT binding site; other site"
/db_xref="CDD:73337"
misc_feature order(245252..245254,245516..245518,245525..245527,
245807..245809,245852..245854)
/gene="purA"
/locus_tag="BARCL_0225"
/note="IMP binding site; other site"
/db_xref="CDD:73337"
gene 246650..248074
/locus_tag="BARCL_0226"
/db_xref="GeneID:10138440"
CDS 246650..248074
/locus_tag="BARCL_0226"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158497.1"
/db_xref="GI:319898404"
/db_xref="GeneID:10138440"
/translation="MVDFVGILKNTINAQKDATPKLRERVYERATETLEHKIVNMKLP
KEAIEAQRRALQSAITTVEEEYLAVEKELLSSIMGWNYTEKRNDEKNAQNSLLSLEND
GSVLVTEKQQQQLSVTNSVDNEIFDNASVISDMPDAKLVNIDSLNIYEKGQNIEESMS
KNALLASNLQADNSHIVSHIFSQALRRANRSSLQKRILIGVIVFFSLIILFSGTFFVS
GRIFISGDQNLQEKNIQISNTLQKAAQTNRKLTQRLLEDGSEVDVGPAEKTVSSSEEG
TSTVVATNLKLFGQVGEAVLYQMRTKHDAEKVTKGSASWSLIEEDSVKGASGELALRG
DITIPSEGLSLRLTLRRNTDESLCAAYIIDLIFITSDKFSGQTINNIKSLTFKANEKS
IGQTLFGTVTAKIDNDFFLFALTGNHPFLDRNLQLIRDLDWLRLVMSDKNGRVHELTF
AKGPAGEAIFNKVIGQWLMQKNKS"
gene complement(248207..249124)
/gene="rpoH"
/locus_tag="BARCL_0227"
/db_xref="GeneID:10137365"
CDS complement(248207..249124)
/gene="rpoH"
/locus_tag="BARCL_0227"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-32 factor"
/protein_id="YP_004158498.1"
/db_xref="GI:319898405"
/db_xref="GeneID:10137365"
/translation="MAHINLPSFIANDSGLSRYLEEVRRFPVLEPQEEYMLAKRYHEH
NDPKAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNIGLMQAVKRFEPERGFRLA
TYAMWWIKASIQEYVLRSWSLVKIGTTANQKRLFFNLRKLKNKLQMFDSGDLNAEQVK
EIATRLKVTEDEVVSMNRRLSGDASLNAPLLTNKGESYEWQDWLVDDSNSQEQILIEQ
DELENRHSMLIQAMDNLNEREKRIFKARRLRDEPMTLEELSNEFNISRERVRQIEMRA
FEKIQNSIKLSALFQKKAQDQVCLQKSEK"
misc_feature complement(248261..249124)
/gene="rpoH"
/locus_tag="BARCL_0227"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:180635"
misc_feature complement(248987..249091)
/gene="rpoH"
/locus_tag="BARCL_0227"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature complement(248762..248968)
/gene="rpoH"
/locus_tag="BARCL_0227"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(248282..248446)
/gene="rpoH"
/locus_tag="BARCL_0227"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(248294..248296,248300..248305,
248309..248317,248321..248326,248330..248332,
248360..248365,248387..248389,248417..248419))
/gene="rpoH"
/locus_tag="BARCL_0227"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(249281..250288)
/gene="rluD"
/locus_tag="BARCL_0228"
/db_xref="GeneID:10138528"
CDS complement(249281..250288)
/gene="rluD"
/locus_tag="BARCL_0228"
/EC_number="4.2.1.70"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
D"
/protein_id="YP_004158499.1"
/db_xref="GI:319898406"
/db_xref="GeneID:10138528"
/translation="MAQHITNTNENACGQRIDQWLAKQYKGEISRSRLQTLIREGHLK
IDGQLIKEPKTKLKSNQIIELIIPAPNDARPQGEALALDIFFEDDHVIVINKPAGLVV
HPGNGNWTGTLVNALIYHCSDSLSGIGGIKRPGIVHRLDKDTSGVMVIAKNDIAHRNL
NAQFADHGRTSALDRRYHAIIWGSPNRNIATIDTFLARSSHDRTKRAVVHSEHANARH
AITHFSLLEKYGTCNDTTPFASLLECRLETGRTHQIRVHMAHIGHPLIGDKVYGNAFK
TKSNVLDPVIKNKIDQFNRQALHATSLTFEHPVNGEIMSFSSPFPKDLADLINHLKKL
N"
misc_feature complement(249293..250249)
/gene="rluD"
/locus_tag="BARCL_0228"
/note="pseudouridine synthase, RluA family; Region:
rluA_subfam; TIGR00005"
/db_xref="CDD:161659"
misc_feature complement(250004..250246)
/gene="rluD"
/locus_tag="BARCL_0228"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(250115..250117,250121..250144,
250163..250165,250169..250174,250181..250186,
250190..250195,250199..250204,250241..250243))
/gene="rluD"
/locus_tag="BARCL_0228"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(249374..250018)
/gene="rluD"
/locus_tag="BARCL_0228"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature complement(order(249524..249526,249866..249877))
/gene="rluD"
/locus_tag="BARCL_0228"
/note="active site"
/db_xref="CDD:211346"
gene complement(250326..251756)
/gene="aldA"
/locus_tag="BARCL_0229"
/db_xref="GeneID:10138480"
CDS complement(250326..251756)
/gene="aldA"
/locus_tag="BARCL_0229"
/EC_number="1.2.1.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aldehyde dehydrogenase"
/protein_id="YP_004158500.1"
/db_xref="GI:319898407"
/db_xref="GeneID:10138480"
/translation="MLNKRQFYINGLWENPNTSDDLHVINPSTEEICAVISVANIKDI
DKAITAAKNAFQNWKKTVPEQRLAFVEKILEIYEKRSENIAKTISMEMGAPIDMARNS
QTAAGSYHIRNFIKAFKDFSFQKVLIKGCSRAILQYDSIGVVGLITPWNWPMNQITLK
VIPALLAGCTMILKPSELAPLSAMLFAEILDEAALPAGVFNLINGDGANVGSYLSSHP
DLEMISFTGSTRAGKAISKNASNTLKRVCLELGGKGANLIFADADADALQRGVNNCFH
NSGQSCNAPTRMLVEHSIYKKAITIAKHIAEKTIVGPSYQSGNHIGPVVSKQQYDKIQ
ALIQSGIDEGATLVAGGIGLPTGMKRGYYIQPTVFADVKPHMRIFREEIFGPVLSIIS
FNTEEEAIALANNTEYGLTNYIQSQDRSKCQRIATQLRSGMVEVNGYDLPDGSYFGGV
KQSGRAREGGRWGIEEFLDTKAISYW"
misc_feature complement(250338..251738)
/gene="aldA"
/locus_tag="BARCL_0229"
/note="Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like; Region: ALDH_CddD_SSP0762; cd07138"
/db_xref="CDD:143456"
misc_feature complement(250338..251711)
/gene="aldA"
/locus_tag="BARCL_0229"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(250416..250418,250605..250607,
250611..250613,250911..250913,251004..251012,
251055..251057,251064..251066,251073..251084,
251124..251126,251235..251237,251304..251318))
/gene="aldA"
/locus_tag="BARCL_0229"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143456"
misc_feature complement(order(250911..250913,250920..250922,
251010..251012,251304..251306))
/gene="aldA"
/locus_tag="BARCL_0229"
/note="catalytic residues [active]"
/db_xref="CDD:143456"
gene 252054..254636
/locus_tag="BARCL_0230"
/db_xref="GeneID:10137972"
CDS 252054..254636
/locus_tag="BARCL_0230"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cell division transmembrane protein"
/protein_id="YP_004158501.1"
/db_xref="GI:319898408"
/db_xref="GeneID:10137972"
/translation="MRHLKKKSISTSFPADKSAEGVSKKNSSVSVVEVLSYPAVWKKA
FSLGQNVRFTRTPEVEILRRRIETDPVFAKQFKVFAEQKQQRFANMTKLDRAVMEPQL
TENEMNIQLSEKKASLYSSAAFKQFVQQTMVTPIEEKKVHHSSLVEVEGMTQKTDHTL
YLSNYLSDNAFFECGPFILEQMNHKTSKKEVSVNFIHNEDLLETNSVVDKSITDFYRV
LECRFPQFCNMGVSKTSTADMKDSEKASDVSYTESEVIQEIQMCHVESSLQDEDNKDV
EKIQDLSVIEAIHETNNMMGVVMHNDPLHVTDRVTVRENAVNVSRTRGEEGEQGATSI
PFFGRDSVFVPSFHSVNCDAYKFPPIDLLQEPIFQDGTIISQETLERSAGLLESVLED
FGIKGEIIHVRPGPVVTMYEFEPAAGVKSSRVIGLSDDIARSMSAISARVAVIPGRNV
IGIELPNAVRETVYLRELIQSSTFGDSEFKLALALGKGINGEPVTAELAKMPHLLVAG
TTGSGKSVAINTMILSILYRLSPEQCRLIMVDPKMLELSIYDGIPHLLTPVVTDPKKA
VTALKWAVREMEERYRKMAKLGVRNIDGFNTRIALAVERGETIMCTVQSGFDKESGEI
LYHEEAMDLTQLPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRP
SVDVITGTIKANFPTRISFQVTSKIDSRTILGEQGAETLLGQGDMLHMAGGGRIVRVH
GPFVSDKEVESVVAHLKKQGKPDYLATVTDSEEDDNDAEVVDSVSEIVAAGNSKEDSE
ELYVQAVKIVLRDKKCSTSYIQRRLAIGYNKAASLVERMEEEGIVGAANHVGKREILL
SKFT"
misc_feature 253443..254105
/locus_tag="BARCL_0230"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature order(253575..253580,253590..253598)
/locus_tag="BARCL_0230"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(253578..253580,253590..253598,253665..253667,
253671..253676)
/locus_tag="BARCL_0230"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 254436..254627
/locus_tag="BARCL_0230"
/note="Ftsk gamma domain; Region: Ftsk_gamma; pfam09397"
/db_xref="CDD:204229"
gene 254831..254968
/locus_tag="BARCL_0231"
/db_xref="GeneID:10137366"
CDS 254831..254968
/locus_tag="BARCL_0231"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158502.1"
/db_xref="GI:319898409"
/db_xref="GeneID:10137366"
/translation="MVRKGDKEIVQMMQPYDQIDASMVTAYLENWLFKTTIYLSDNIR
N"
gene complement(255074..255487)
/gene="mscL"
/locus_tag="BARCL_0232"
/db_xref="GeneID:10137367"
CDS complement(255074..255487)
/gene="mscL"
/locus_tag="BARCL_0232"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Large-conductance mechanosensitive channel"
/protein_id="YP_004158503.1"
/db_xref="GI:319898410"
/db_xref="GeneID:10137367"
/translation="MLKEFKEFALKGNMIDLAIGVIIGGAFGGLVNSIVNDIFMPVIG
LITGGIDFSNMFIQLAGEKKATLNAAKEAGATISYGNFITLFINFLIIAWVLFLFVKG
INKMRRQQKEAENPTDMSLEEQLLTEIRDLLANKK"
misc_feature complement(255077..255487)
/gene="mscL"
/locus_tag="BARCL_0232"
/note="large-conductance mechanosensitive channel;
Provisional; Region: mscL; PRK13952"
/db_xref="CDD:184414"
misc_feature complement(255077..255487)
/gene="mscL"
/locus_tag="BARCL_0232"
/note="large-conductance mechanosensitive channel;
Reviewed; Region: mscL; PRK00567"
/db_xref="CDD:179069"
gene 255936..257024
/gene="pyrD"
/locus_tag="BARCL_0233"
/db_xref="GeneID:10138320"
CDS 255936..257024
/gene="pyrD"
/locus_tag="BARCL_0233"
/EC_number="1.3.98.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Dihydroorotate dehydrogenase"
/protein_id="YP_004158504.1"
/db_xref="GI:319898411"
/db_xref="GeneID:10138320"
/translation="MNFFRCIGHSALFMLDPERAHHLAISGLKSGLGGCQRIVDKRLC
VNILGLQFENFIGLAAGFDKNAEVVDAILRLGFGFTEIGTVTPKPQVGNPKPRLFRLI
KDEAIINRMGFNNDGYQIVYHKLCKRKRGGIIGVNIGANKDTVNRIDDYISGIVCFYD
AADYFALNISSPNTPGLRNLQIRNSLRFLIQAISQTRSEQKEKHGFSVPIFLKIAPDL
TEKELDDVAQEISVSDFDGLIISNTTLSRQGLTDNKWIAEEGGLSGRPLFERSTIVLA
KMRKKLGKNIAIIGVGGVKDAQTALEKIKAGADLIQIYSGMIYEGPNIAVTIMKEILR
LMQQDGIDTITAYRDYNVDNWAKCALPL"
misc_feature 255960..256931
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD
catalyzes the oxidation of (S)-dihydroorotate to orotate.
This is the fourth step and the only redox reaction in the
de novo biosynthesis of UMP, the precursor of all
pyrimidine nucleotides. DHOD requires...; Region:
DHOD_2_like; cd04738"
/db_xref="CDD:73400"
misc_feature 255966..256931
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="dihydroorotate dehydrogenase, subfamily 2; Region:
pyrD_sub2; TIGR01036"
/db_xref="CDD:200068"
misc_feature order(255996..255998,256233..256235)
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="quinone interaction residues [chemical binding];
other site"
/db_xref="CDD:73400"
misc_feature order(256113..256115,256125..256127,256185..256187,
256260..256262,256266..256274,256437..256439,
256446..256448,256452..256454,256572..256574,
256656..256664,256725..256727,256812..256814,
256875..256880)
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="active site"
/db_xref="CDD:73400"
misc_feature order(256125..256127,256446..256448,256572..256574)
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="catalytic residues [active]"
/db_xref="CDD:73400"
misc_feature order(256185..256187,256260..256262,256437..256439,
256572..256574,256656..256661,256725..256727,
256812..256814,256875..256880)
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73400"
misc_feature order(256260..256262,256437..256439,256443..256445,
256659..256664)
/gene="pyrD"
/locus_tag="BARCL_0233"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73400"
gene 257126..257203
/locus_tag="BARCL_t03"
/db_xref="GeneID:10138455"
tRNA 257126..257203
/locus_tag="BARCL_t03"
/product="tRNA-His"
/db_xref="GeneID:10138455"
gene 257127..257203
/locus_tag="BARCL_tRNA3"
/db_xref="GeneID:10138711"
tRNA 257127..257203
/locus_tag="BARCL_tRNA3"
/product="tRNA-His"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138711"
gene 257408..258811
/locus_tag="BARCL_0234"
/db_xref="GeneID:10137933"
CDS 257408..258811
/locus_tag="BARCL_0234"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glutamine synthetase"
/protein_id="YP_004158505.1"
/db_xref="GI:319898412"
/db_xref="GeneID:10137933"
/translation="MKNENCKPISNFLENLRGVKDWEQVSQWLAFRNVEDIECITPDQ
AGVARGKMMLSKKLTSDTSLALPSSVFMSTISGNYPEDGNGFEYPKADGDLRLEPDLS
TLTIVPWEEAPTAQVICDLIYQDGQSVEYTPRNVLRTVIDFYTQMGLKPVIAPEIEFY
FVQKNPDPDYPLVPPVGRSGRSIGGGQGYSIAGVNEFDEVIDDIYQFSEAQGLEIDTL
IHEEGAGQFEINLRHGDPIELADQVFMFKRTIREAALKHNMYATFMAKPIQRQPGSAM
HIHQSVIDQETGSNIFTEEDGEESIYFRYFIGGLQRHMAGALVMLAPYVNSYRRLMPG
ISAPVNLRWGYDNRTTAFRVPRSAPQGRRVENRIPSSDANPYLAFAASLACGLIGLQQ
KLEPDKPTKKTVNADNIELPRGLIEAVNLFEQDKALRAILGDTFVNTYAAIKRQEFEI
FMEVISPWEREYLLLNV"
misc_feature 257471..258805
/locus_tag="BARCL_0234"
/note="Glutamine synthetase [Amino acid transport and
metabolism]; Region: GlnA; COG0174"
/db_xref="CDD:30523"
misc_feature 257795..258565
/locus_tag="BARCL_0234"
/note="Glutamine synthetase, catalytic domain; Region:
Gln-synt_C; pfam00120"
/db_xref="CDD:201016"
gene 258822..260105
/gene="ordL"
/locus_tag="BARCL_0235"
/db_xref="GeneID:10137368"
CDS 258822..260105
/gene="ordL"
/locus_tag="BARCL_0235"
/EC_number="1.-.-.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_004158506.1"
/db_xref="GI:319898413"
/db_xref="GeneID:10137368"
/translation="MIDYNPISPGYSWYEDTLEERPLYPFVDEKAQCDVVIIGGGFTG
LSAAYHLAKNGVSVILCEASRFGDGASGRNGGQLGTGQRQWVETLEKKYGFERSKALF
DLAEEAKRDILSWCTRPDCKIDFMIGQLSVIHKKREIIAYQQHAETLQRYGYSSLTFM
DKNETAERLGSSFYHGGLYDAETGHINPLKLVVWLAKRAKKAGAKLYEKTQITGIKRK
GNQCIVITERTNITAENVLLATNAYKLGLQHFIEKNIVSIRSYIGATEPLPKHSSILS
EGEAVDDSRFMVRYFRKSMDNRLLFGGVESYDYRYPVNLNERIRRQVIEIYPHLRSIN
LTHCWGATVAITVERMPYVRQIMPGVTYCGGYSGHGVMLAPFIGKLYAEWLCGKHERF
AYFQDLKISSFPGGKFLRYPLIFLAMNWFSLMDHF"
misc_feature 258858..259934
/gene="ordL"
/locus_tag="BARCL_0235"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 258909..260048
/gene="ordL"
/locus_tag="BARCL_0235"
/note="Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism]; Region: DadA; COG0665"
/db_xref="CDD:31009"
gene 260554..260670
/locus_tag="BARCL_0236"
/db_xref="GeneID:10138370"
CDS 260554..260670
/locus_tag="BARCL_0236"
/EC_number="1.1.1.49"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate 1-dehydrogenase"
/protein_id="YP_004158507.1"
/db_xref="GI:319898414"
/db_xref="GeneID:10138370"
/translation="MHRDKVVWYWIDRILKEWKMIKSSVHWHNSGSLRGNLL"
gene 260728..261444
/gene="pgl"
/locus_tag="BARCL_0237"
/db_xref="GeneID:10137369"
CDS 260728..261444
/gene="pgl"
/locus_tag="BARCL_0237"
/EC_number="3.1.1.31"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="6-phosphogluconolactonase"
/protein_id="YP_004158508.1"
/db_xref="GI:319898415"
/db_xref="GeneID:10137369"
/translation="MYEMNINRFETPSALALALTDRVAAELSVSILERKQAILAVSGG
KTPELFFHYLSKVDIDWQNIIITLVDERFVSVSDERSNEYCVRRHLLQNFAAKARFVG
LYHKAVTAELAAFSAANRVNTLPMPFDVTVLGMGIDGHTASFFPDSDRLEQALDLQSQ
ALVLPIYARSAAEPRLTLTLPVIIQSRFIALHFEGSQKYACFEEACRNGSEMEIPIRA
VLHHAHHLVQVYWSPAENEI"
misc_feature 260764..261426
/gene="pgl"
/locus_tag="BARCL_0237"
/note="6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
6PGL catalyzes the second step of the oxidative phase of
the pentose phosphate pathway, the hydrolyzation of
6-phosphoglucono-1,5-lactone (delta form) to
6-phosphogluconate. 6PGL is thought to guard...; Region:
6PGL; cd01400"
/db_xref="CDD:73166"
misc_feature order(260860..260865,260941..260943,261145..261147,
261250..261252,261319..261321)
/gene="pgl"
/locus_tag="BARCL_0237"
/note="putative active site [active]"
/db_xref="CDD:73166"
gene complement(262015..262914)
/gene="folD"
/locus_tag="BARCL_0238"
/db_xref="GeneID:10138391"
CDS complement(262015..262914)
/gene="folD"
/locus_tag="BARCL_0238"
/EC_number="3.5.4.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="methylenetetrahydrofolate
dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
/protein_id="YP_004158509.1"
/db_xref="GI:319898416"
/db_xref="GeneID:10138391"
/translation="MDNIIDGKQLAEDILVKVKNETKKLHKNHTIQPGIAVIIVGDDP
ASQIYVSSKSKKAEECGFLSIKHVMSKETQEKELLKLIETLNSDPKIHGILVQLPLPA
HINTNNITQTIAVHKDVDGFHYINIGKLTANVFEDTIIPCTPAGVMMMIQQKCGKDLS
GLDAVIVGRSNIVGKPMAALLTAANATVTIAHSRTRDLDEVCRSADILVVAVGRPKMI
KKGWVKTGAIVIDVGINRIATSGKNTTKSHIVGDVDFEEVREKASAITPVPGGVGPMT
IAMLMVNTLKAAARAHKLPVPEF"
misc_feature complement(262018..262914)
/gene="folD"
/locus_tag="BARCL_0238"
/note="bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional; Region: PRK14188"
/db_xref="CDD:184558"
misc_feature complement(262555..262908)
/gene="folD"
/locus_tag="BARCL_0238"
/note="Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain; Region: THF_DHG_CYH; pfam00763"
/db_xref="CDD:201431"
misc_feature complement(262051..262572)
/gene="folD"
/locus_tag="BARCL_0238"
/note="NADP binding domain of methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase; Region:
NAD_bind_m-THF_DH_Cyclohyd; cd01080"
/db_xref="CDD:133448"
misc_feature complement(order(262303..262305,262330..262335,
262339..262341,262345..262362,262369..262371,
262378..262383,262408..262410,262426..262428,
262432..262434,262531..262533,262540..262545))
/gene="folD"
/locus_tag="BARCL_0238"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:133448"
misc_feature complement(order(262087..262089,262096..262098,
262213..262215,262219..262221,262264..262266,
262273..262275,262279..262281,262336..262341,
262405..262410,262486..262488))
/gene="folD"
/locus_tag="BARCL_0238"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:133448"
misc_feature complement(order(262084..262086,262105..262110))
/gene="folD"
/locus_tag="BARCL_0238"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133448"
gene 263234..265114
/locus_tag="BARCL_0239"
/db_xref="GeneID:10138146"
CDS 263234..265114
/locus_tag="BARCL_0239"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="AsmA family"
/protein_id="YP_004158510.1"
/db_xref="GI:319898417"
/db_xref="GeneID:10138146"
/translation="MCIKIIKFLSGIFIAIVSLGGAAVIIFPYIVSTDAIRIRLAQDL
SVWTGYNVQLRDPPRLKIFPYPKAFLSGVTLTPKIESIAPLMEVESIEVDLSLVSLLG
GHISFSETRVMYPKFVMDKPVKTISDFFDTLLRSQGALGLAIQSAREIIKHNPDNPDV
ASLLNQPFGRIVIENGTLIYRDGISDVMEKITGLNASIDWPGLTQAVQFRAKARWHGE
LTELLINADQALFLLAGGKSSLKVSFNSVRGGITFKGQAQLSEYYIFDGKLSLRFPGW
DQTVAWIGGNQFWGNGLKIPIVWESHFLAQPARIRMNNIIFTIGTANARGALEFDFKN
HVPVLIGSLGFDKLDFNILKSLFFCSEKENEFFDVAFLNRIGLDIRLSAPQAKIGDIG
LTDLAAAIQIKNGHGIFDLGNVNIFGGSIQSNIQIIPDGKRANIKGSASGTSVDVQAI
SLALGLSPLLQAKTNFIMTMQMFPNCWSKILTQMQGQLTLNMSSGRLVGYNLNDLQSK
LSENEQFLLMNNQKLSTDFDRLNIKAKLSDGVISVTEALMHTADWNLSVHKAIETFVT
KGERNDLILRAKLQKNNRSETICKDIECLTNSLVQPLVFSFSPAEKVFGNFFVKKNIT
EN"
misc_feature 263243..264868
/locus_tag="BARCL_0239"
/note="AsmA family; Region: AsmA; pfam05170"
/db_xref="CDD:147383"
misc_feature 264410..>264904
/locus_tag="BARCL_0239"
/note="AsmA-like C-terminal region; Region: AsmA_2;
pfam13502"
/db_xref="CDD:205680"
gene complement(265207..265365)
/locus_tag="BARCL_0240"
/db_xref="GeneID:10137370"
CDS complement(265207..265365)
/locus_tag="BARCL_0240"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158511.1"
/db_xref="GI:319898418"
/db_xref="GeneID:10137370"
/translation="MSFKKATVITIITILGFILVTVGIGSVGANEKRVIIHDGYGIST
HFNTHTPA"
gene 265588..266310
/locus_tag="BARCL_0241"
/db_xref="GeneID:10137371"
CDS 265588..266310
/locus_tag="BARCL_0241"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158512.1"
/db_xref="GI:319898419"
/db_xref="GeneID:10137371"
/translation="MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKI
LLFNGQDGEWLAKLTFIKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKA
VEMGASVLHPIITHYTQVTRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENW
DETHALFFCDELSESYNTIPLFKKHRTTPLGVLIGPEGGFSEEERVFLKKYPFVFSVS
LGPRILRADTAAVAALALVNAI"
misc_feature 265606..266271
/locus_tag="BARCL_0241"
/note="16S ribosomal RNA methyltransferase RsmE;
Provisional; Region: PRK11713"
/db_xref="CDD:183286"
misc_feature 265651..266271
/locus_tag="BARCL_0241"
/note="RNA methyltransferase; Region: Methyltrans_RNA;
pfam04452"
/db_xref="CDD:203020"
gene 266398..267771
/gene="gshA"
/locus_tag="BARCL_0242"
/db_xref="GeneID:10137372"
CDS 266398..267771
/gene="gshA"
/locus_tag="BARCL_0242"
/EC_number="6.3.2.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glutamate-cysteine ligase"
/protein_id="YP_004158513.1"
/db_xref="GI:319898420"
/db_xref="GeneID:10137372"
/translation="MALDTTDESEINNLDSLVGYFEEGCKAEDDWCIGTEHEKFPFYV
DGFRPVPYEGTKGIRVLLEKMQEVLGWKAVLDEGNIIGLLGSVDQGAISLEPGGQFEL
SGAPLKTIGNTYCEVMAHLELLKKVSQPLGICFLGMGASPKWTLDETPRMPKSRYQIM
TNYMPKVGHNGVDMMYRTATIQVNLDFSSETDMRRKMQVSMKLQSIATALFASSPFTE
GKPNGFLSWRSHVWRNTDNQRTGILPFVFSERFGFSDYVEWALDVPMYFVVRDGHYYD
CTHITFRQFMNGALRRQIADSTPAMGDWTNHLSTLFPEVRLKRFLEMRGADGGSLQHI
CALSAFWVGLLYDSEALNEAEALTKDWCFEEVLEMHTRVAKEGLKTPFRQTMILELAR
QVLAISRKGLKNRQQYDTGGFDETDFLTPLEEVVAIGQTNADKLLSNYHSIWGKSVDR
VFLEYTY"
misc_feature 266398..267768
/gene="gshA"
/locus_tag="BARCL_0242"
/note="Gamma-glutamylcysteine synthetase [Coenzyme
metabolism]; Region: GshA; COG3572"
/db_xref="CDD:33374"
gene complement(268115..268348)
/gene="rpsU"
/locus_tag="BARCL_0243"
/db_xref="GeneID:10138204"
CDS complement(268115..268348)
/gene="rpsU"
/locus_tag="BARCL_0243"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_004158514.1"
/db_xref="GI:319898421"
/db_xref="GeneID:10138204"
/translation="MQVLVRDNNVDQALRALKKKMQREGIFREMKMRGYYEKPSEKRA
REKAEAIRRTHKLARKHAQREGLISGGRTFPVR"
misc_feature complement(<268241..268348)
/gene="rpsU"
/locus_tag="BARCL_0243"
/note="30S ribosomal protein S21; Reviewed; Region: rpsU;
PRK00270"
/db_xref="CDD:178952"
gene 268496..268624
/locus_tag="BARCL_0244"
/db_xref="GeneID:10138551"
CDS 268496..268624
/locus_tag="BARCL_0244"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158515.1"
/db_xref="GI:319898422"
/db_xref="GeneID:10138551"
/translation="MLLLANMLPLSKVWSVLLLILDPVAYNRIVQAQTISGMSCYR"
gene 269055..270977
/locus_tag="BARCL_0245"
/db_xref="GeneID:10137373"
CDS 269055..270977
/locus_tag="BARCL_0245"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type f : factor"
/codon_start=1
/transl_table=11
/product="Bartonella effector protein (Bep); substrate of
VirB T4SS"
/protein_id="YP_004158516.1"
/db_xref="GI:319898423"
/db_xref="GeneID:10137373"
/translation="MEKDSTPNSISFLQKQPQKFHEAFDAAISLYMLDGLFISYETLE
IVRKYARKGYSLEQFNNLMDNAGLKNNDVRLNARKVKINSNTLQSSNGYAYNNSRTLK
NKYGMEGKAFERICAHDIIQAIVNLKEEPLPEKFDSSYLKYLHKCLFEKTFEGAGCIR
EPPFKFSDYLKYLHKCLFEKMFEWAGFTHELPFKFSDGTALINNEIKDGLKRIDQMLA
EKNNLRGLSREEFIHEASTIFALLNNLYPFQAGSECTQRIFFEKMAEAAGHKLDFSVV
TEKRMRFACHAALPSDGNDIGDITPMHHLFEDISNPEKVRILKEFMIHMRDTNVIKYV
EMKNKIFVLPNEGSTYTGIYEDCSPDFIMFMVKDNYFVCKKDYFAPETLKKLRFGKEL
TFTASMRDNFENILIPGEKLAPLTEKKIVARIVKNASVQTSREKIERLSKRVYGDSKI
LNKDISLINIDSRLGKQHVKQIVDFSKYTSKLAGTVILRIRSPKRRRAQANYFKLVQE
VDSYISTVIATREKILQEYQKEQERCQQVVEMPSQALQDIINLPKEDRIKALNDNPSL
NKDIEDLLNKVKIRLSPREHQALDGNHYEKLARSVGISMSKAQKIAEIVQKVQIARQL
TRKYKIHKSRTMGMTR"
misc_feature <269508..269981
/locus_tag="BARCL_0245"
/note="Fic/DOC family; Region: Fic; cl00960"
/db_xref="CDD:207264"
gene complement(271319..271395)
/locus_tag="BARCL_tRNA40"
/db_xref="GeneID:10137374"
tRNA complement(271319..271395)
/locus_tag="BARCL_tRNA40"
/product="tRNA-Arg"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10137374"
gene 271368..271493
/locus_tag="BARCL_0246"
/db_xref="GeneID:10137945"
CDS 271368..271493
/locus_tag="BARCL_0246"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158517.1"
/db_xref="GI:319898424"
/db_xref="GeneID:10137945"
/translation="MLYPAELRVRIQFFVSLGYRVLNRFVSELQVKLGKIKIFIC"
gene 271779..272888
/locus_tag="BARCL_0247"
/db_xref="GeneID:10137375"
CDS 271779..272888
/locus_tag="BARCL_0247"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158518.1"
/db_xref="GI:319898425"
/db_xref="GeneID:10137375"
/translation="MGLLKKTVPFVLLAFVLIFSYCKSKHSSENSIRAVDQTKNVSHK
TLKSSTGMPAAKVIVDSVKVKKFSERLNVIGNGRAIATVGLTPWSAGVVDKLFVSAGE
KVQAGDLIAKLDSKKEEIAAARAKVQRDNSALTLSRILKLRATNTATEVQELTARLEL
DNANLALRDAELALDRRTIRTPISGIVGILPIDVGNAVALNTEIGRIENRERILIDIW
VPERYASRISKGDKVAVTLTTQSSETFIGHIYAIDNIVDVASRTFHVQVEIKNEKDTL
MSGMSFSVTFQFDIGLFPVVNPLAIQWDSNGSFVWCVKEDKVERTPVSIIKHKTDKVF
VKAFLENDAQVVIQGVQTLYPGRSVIVEVSKGPQQ"
misc_feature 271947..272861
/locus_tag="BARCL_0247"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 272022..272162
/locus_tag="BARCL_0247"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 272310..272615
/locus_tag="BARCL_0247"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 272921..276064
/gene="acrD"
/locus_tag="BARCL_0248"
/db_xref="GeneID:10137376"
CDS 272921..276064
/gene="acrD"
/locus_tag="BARCL_0248"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="AcrB/AcrD/AcrF multidrug efflux protein"
/protein_id="YP_004158519.1"
/db_xref="GI:319898426"
/db_xref="GeneID:10137376"
/translation="MSQEFKTKQSIIQPEQGGMIALFIRRPVFTFVVNAMIMIAGFAA
WMNVDVRELPDVDTPVTTIMTIFSGASAETIDREVTKVIEDAVARVSGVKTISSTSSF
GRSRVQINFNVGVDLNVAASDIRDAISRIAYSLPKDADSPLIIKADSNAASMMYLVVT
SPTMSIDDLTTVVNDQIVDVLSAVDGVGDVQVDNARTKIFQIDVDQVKLASYGLTVAD
ISRVLADMTTDAPVGSLRNSIQTLIVRATARLTTPEAFEQVVLKPHVRLGDVAHVTLS
PDVETVILRINGKTGIGMGIVRKAQSNTLDISEGIRAVLENLKIVLPPSVDISILSDD
AIFIKSALHEVKITLVIAILSVILVIFLFLRDIRVTLIPVLSIPVALIGTIAAIYLAD
FSLNILTFLGIVLATGLVVDDAIVVLENIVRWRNMGLGSRSAAVVGTREVFFAVLATT
LTLVAVFVPISFLPGQVGGLFKEFGFVLAISILLSSVVALTLCPMLASRFLRKYVEDS
GGGTHYFVLLDKWGTFFSRSYAYSLHKCLERPWTVILVSLIFAGFCFGGYMKLQQELT
PEEDRAVILLVINGPQGISVQYLNEQVKQIEASLEPLRDSGEIINSYSIAGIGGSPNS
AFLVLLLSSWDQRSRSQQEIVEDINRKVKEFPAVLVFAAQGNSLGIRETGQGLQFAIL
GDNYTKLESTAGELIKLLQLDARFVRPRLTVDATQPQFFIEIDREKASNLGIDITNLS
NTLQAILDGRKIGSIYIDDHSYNVKLTSRKNPINNPADLENVFFKTTDDKYVPLSAIA
DLHEKAIAPQLKREKRMSAVVLSAGLASGVSLGNAYQIIKDIASPLLLEGNYIVPLGE
AATLGETSSSFMIVFGIAFVIILLVLAAQFESFVSGFIIMATVPLGIGCAVIAMLFSG
VSLNIYSQIGLILLVGVMAKNGILIVEFADQLRNQGKSVREAVEDAANIRLRPVCMTM
ICAILGGIPLVLAKGAGAEARIALGWVIFGGLGLATVFTLYVTPVVYLLLGRFVQPKA
EEEMCLKKELAKLNDFS"
misc_feature 272972..275941
/gene="acrD"
/locus_tag="BARCL_0248"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
gene 276249..277895
/gene="pgi"
/locus_tag="BARCL_0249"
/db_xref="GeneID:10137962"
CDS 276249..277895
/gene="pgi"
/locus_tag="BARCL_0249"
/EC_number="5.3.1.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="YP_004158520.1"
/db_xref="GI:319898427"
/db_xref="GeneID:10137962"
/translation="MIIRNERAFEQVLKALKQHLIKDGVCDIRQHFAKDAQRFSRFSL
KLDDLLFDFSKCGVTFNTLQLLDNLAVAADVLGWCKAMFSGEVINTTEKRSALHVALR
FSVDEIFMLDGRDIVRDIQAVFAHMEIFSEMVRDGSYEGSSGERILDIVNIGIGGSDL
GPAMVTNALKPYHDGPRCHFVSNVDSAHISDILADLNPATTLFVIASKTFTTIETMVN
ARVARQWISAHLGEEAIRTHFVAVSSKVDKVIEFGIDSSKIFRFWDWVGGRYSVWSAI
GLVIMLAIGGQNFRQFLKGAQQMDQHFKSAPLHQNIPIRFALLGFWHRIICGYTSRAV
IPYAQRLERFPAYLQQLDMESNGKQVFLDGKPMNFPSGPVVWGSSGTNGQHAFFQFLH
QGTDIVPVEFILFVKGHEPNLCHMHDMLVANCLAQSEALMRGRNIEEVRHTIHGVDDT
ELDNLALHKSCKGNRPNIILLQDLLTPFTLGRLIALYEHRIFVEGILMNINPFDQWGV
EFGKELANELLPMICGENKNNNHDNSTLELLAHIQERRIK"
misc_feature 276288..277889
/gene="pgi"
/locus_tag="BARCL_0249"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:178917"
misc_feature 276609..277097
/gene="pgi"
/locus_tag="BARCL_0249"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:88410"
misc_feature order(276711..276713,276717..276722,276867..276875,
276882..276884,277050..277052)
/gene="pgi"
/locus_tag="BARCL_0249"
/note="active site"
/db_xref="CDD:88410"
misc_feature order(276792..276803,276888..276890,276900..276902,
276909..276911)
/gene="pgi"
/locus_tag="BARCL_0249"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88410"
misc_feature 277239..277802
/gene="pgi"
/locus_tag="BARCL_0249"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:88411"
misc_feature order(277260..277262,277296..277298,277308..277310,
277317..277322,277380..277382,277386..277394,
277401..277406,277413..277418,277425..277427,
277494..277496,277500..277502,277524..277526,
277533..277535)
/gene="pgi"
/locus_tag="BARCL_0249"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88411"
misc_feature order(277296..277298,277308..277310)
/gene="pgi"
/locus_tag="BARCL_0249"
/note="active site"
/db_xref="CDD:88411"
gene complement(278249..279106)
/gene="yopJ"
/locus_tag="BARCL_0250"
/db_xref="GeneID:10138389"
CDS complement(278249..279106)
/gene="yopJ"
/locus_tag="BARCL_0250"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Effector protein yopJ (Virulence factor yopJ)"
/protein_id="YP_004158521.1"
/db_xref="GI:319898428"
/db_xref="GeneID:10138389"
/translation="MQRLLNAIKNAIGLPNTEDSFSNASLENIITDLENDIANNYWHN
RVYAERDFKMMPALVKQANDKYPEMNLKLIKEPIDFVSSFKKTIKKGIQSSRYIVSAG
GDYQSHFGVVDHQTLNNKISLILFEPARFDLTKPAILGAKMQIIMETRLSHCYFSMAE
MDIQRSISECGIFSLAIAKKLYRQSDKLEKLHIDNIKGDQWDRGIHLSYNLLDKYLPV
SFYKHTQGMRRIKEYIEKNPGSEDEIVNKKNQTIVERFEENLVILPSKSISVSIHKKR
VSEYKSLMR"
misc_feature complement(278255..279064)
/gene="yopJ"
/locus_tag="BARCL_0250"
/note="YopJ Serine/Threonine acetyltransferase; Region:
YopJ; cl07849"
/db_xref="CDD:186706"
gene 279694..279810
/locus_tag="BARCL_0251"
/db_xref="GeneID:10138703"
CDS 279694..279810
/locus_tag="BARCL_0251"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158522.1"
/db_xref="GI:319898429"
/db_xref="GeneID:10138703"
/translation="MLVSAITINEEAALKSASYGAEQSLGENYGIVIAGLSS"
misc_feature <279694..>279780
/locus_tag="BARCL_0251"
/note="Protein of unknown function (DUF3380); Region:
DUF3380; pfam11860"
/db_xref="CDD:152296"
gene complement(280480..280623)
/locus_tag="BARCL_0252"
/db_xref="GeneID:10137377"
CDS complement(280480..280623)
/locus_tag="BARCL_0252"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158523.1"
/db_xref="GI:319898430"
/db_xref="GeneID:10137377"
/translation="MNFIVQMAELVDAQISGICATRRGGSNPLLGTKFFLYNILILLI
FLM"
gene complement(280527..280611)
/locus_tag="BARCL_tRNA39"
/db_xref="GeneID:10137378"
tRNA complement(280527..280611)
/locus_tag="BARCL_tRNA39"
/product="tRNA-Leu"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10137378"
gene 280529..280786
/locus_tag="BARCL_0253"
/db_xref="GeneID:10137943"
CDS 280529..280786
/locus_tag="BARCL_0253"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158524.1"
/db_xref="GI:319898431"
/db_xref="GeneID:10137943"
/translation="MPKRGFEPPRLVAQIPEICASTNSAIWTMKFILSLLNTFCQCNY
KNYQLMETVKNFTDEINICTKRIIDSKVVTNILFKQYNNQI"
gene 280875..281006
/locus_tag="BARCL_0254"
/pseudo
/db_xref="GeneID:10137379"
misc_feature 280875..281006
/locus_tag="BARCL_0254"
/inference="ab initio prediction:AMIGene:2.0"
/note="effector protein;Evidence 7 : Gene remnant; Product
type f : factor"
/pseudo
/db_xref="PSEUDO:CBI75935.1"
gene 281068..281340
/locus_tag="BARCL_0255"
/pseudo
/db_xref="GeneID:10137380"
misc_feature 281068..281340
/locus_tag="BARCL_0255"
/inference="ab initio prediction:AMIGene:2.0"
/note="effector protein;Evidence 7 : Gene remnant; Product
type f : factor"
/pseudo
/db_xref="PSEUDO:CBI75936.1"
gene 281434..282756
/locus_tag="BARCL_0256"
/db_xref="GeneID:10137381"
CDS 281434..282756
/locus_tag="BARCL_0256"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type f : factor"
/codon_start=1
/transl_table=11
/product="effector protein"
/protein_id="YP_004158525.1"
/db_xref="GI:319898432"
/db_xref="GeneID:10137381"
/translation="MARSDKIEEGLKIIDQKLSRKNNWRNLSREEFVHNASVTFAFLH
NLQPFVAGNGCAQRIFFEKIAEAAGHKLDFSVVTEARMQFAGSAALSFGDNEGNVAPL
RHLFEDISNPEKVSVLKEFIQYTSDIKGEDIRDKVIVMPNEGETYTGFYKSCSLDSIM
LMVKDSYVLCKKDYLPPEKLKTLKLGDSITFTASISKDCENILIPEERLASLTEEEII
EKIQKDFFVQKCRKEIKSLSKLIYGNSEMLNEHMDMINIGSSAGEQNVRYAVTDLPKP
ILKSSGTKMLGRADPKYQQTEKNVFYLDQKINSYISAVLHSRKRILKEHSLEQERCGQ
VVKMPCKTVQDILSMSGNISIEILNSDFLLCKHLQDFMCKVGSRLSQSERKAIGDNNY
NVLAESIGISVSKAKRVTQIIKRAQEVCQKEKVFKADRSRIMATGFSK"
misc_feature <281512..281760
/locus_tag="BARCL_0256"
/note="Fic/DOC family; Region: Fic; cl00960"
/db_xref="CDD:207264"
gene complement(282839..283459)
/gene="gpmA"
/locus_tag="BARCL_0257"
/db_xref="GeneID:10137382"
CDS complement(282839..283459)
/gene="gpmA"
/locus_tag="BARCL_0257"
/EC_number="5.4.2.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_004158526.1"
/db_xref="GI:319898433"
/db_xref="GeneID:10137382"
/translation="MGRTLVLIRHGQSEWNLTNRFTGWKNPALTEKGHTEAITAGKNL
KAAGFKFDIAYTSALQRAQKTAEHILEQLGQSNLHLVKNTALNERDYGDLSGLNKDEA
RQKWGDKQVHIWRRSYTIAPPNGESLRDTGARVWPYYLYHIQPHVLRSKTVLVVAHGN
SLRALIMILEGLNNEEIMSQELETGIPIIYEFNTDSTIKSKEIIVP"
misc_feature complement(282848..283450)
/gene="gpmA"
/locus_tag="BARCL_0257"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(282983..282988,283277..283279,
283430..283435))
/gene="gpmA"
/locus_tag="BARCL_0257"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(283495..284301)
/gene="dapB"
/locus_tag="BARCL_0258"
/db_xref="GeneID:10138197"
CDS complement(283495..284301)
/gene="dapB"
/locus_tag="BARCL_0258"
/EC_number="1.3.1.26"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Dihydrodipicolinate reductase"
/protein_id="YP_004158527.1"
/db_xref="GI:319898434"
/db_xref="GeneID:10138197"
/translation="MRLAVVGANGKMGRELITALQYRQDVKLSAAIVRKGSPFIGKDA
SILIGSNLLKIRITDDLENAFSNAECILDFSQPQASVVYADYAAKKGLIHIIGTTGFS
KKEEMQIAAFAKHTTIVKSENMSLGINLLANLVKKAAKVLEADDFDIEIYEMHHAEKI
DAPSGTALLLGNAAAKGRNVTLKDVNISEHNRYTSKRKKGTIGFTCSRGGTVIGDHSV
TFAGLNERIVLSHLAQERSIFANGALKAALWAKERKNGLYSMLDVLGLKD"
misc_feature complement(283504..284301)
/gene="dapB"
/locus_tag="BARCL_0258"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(283930..284301)
/gene="dapB"
/locus_tag="BARCL_0258"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(283510..283923)
/gene="dapB"
/locus_tag="BARCL_0258"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(284642..284710)
/locus_tag="BARCL_0259"
/db_xref="GeneID:10138060"
CDS complement(284642..284710)
/locus_tag="BARCL_0259"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158528.1"
/db_xref="GI:319898435"
/db_xref="GeneID:10138060"
/translation="MIKKFLITKLDMALPLRSGSNA"
gene 284688..284867
/locus_tag="BARCL_0260"
/db_xref="GeneID:10137383"
CDS 284688..284867
/locus_tag="BARCL_0260"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158529.1"
/db_xref="GI:319898436"
/db_xref="GeneID:10137383"
/translation="MIKNFLIICVIRTTICTEAVIKRLNLVINCLLSSVIKSRGVLEN
LRFISIRNRFRTKSY"
gene 285201..285365
/locus_tag="BARCL_0261"
/db_xref="GeneID:10137384"
CDS 285201..285365
/locus_tag="BARCL_0261"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158530.1"
/db_xref="GI:319898437"
/db_xref="GeneID:10137384"
/translation="MIKIGEEFMENTSPKIRYENASNYIPRFFDYTYSIPLYPIISEK
TQKTQKTQKS"
gene 285365..286996
/locus_tag="BARCL_0262"
/db_xref="GeneID:10137385"
CDS 285365..286996
/locus_tag="BARCL_0262"
/function="15.9 : Pathogenesis"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 2a : Function of homologous gene
experimentally demonstrated in an other organism; Product
type f : factor"
/codon_start=1
/transl_table=11
/product="Bartonella effector protein (Bep); substrate of
VirB T4SS"
/protein_id="YP_004158531.1"
/db_xref="GI:319898438"
/db_xref="GeneID:10137385"
/translation="MSRANCNDYVQSSISFYGYTHFDGRTLKNKYGMQGKALQERCAY
DLLQAMLNLRKEPLPEKFDSSYLKYLHQRLYEKMFEWAGCTCDTPFTFSDGTVTKVPI
NNKIKEGLKRIDQILAEKNNFQGLSRKEFIHEVSTVFILLNKIRPFMVGNKYVQRIFF
EQIAEAAGHKLDFSVVTEKRMQFAIHAALSFDGNNNRGNITPMLHLFEDISNPEKVGI
LKEFMIYIRETDVITPEQMHNKIIVIPDEGSTYTGIYKGCSLDSIMLMVKDSYVLCKK
DYFSPITVKTLQLDDKLTFRALMPDNFKNILIPGEELPSLTEKEIVARIVKNASVQKC
RKEIERLSGLVYGNSRMVNEYMYLINTDSSLGEHHVRNVMNFPQATSKFAGIKILGMK
SQKYKQAEAKAFDLSQKIDDYISIVISTRENILQEHQSAQERCKKVLEMPSQALRDIL
NLPKEDRITTLNANPSLHKELEDFMSKIKIRFSPNEHNAIGKNRYEQLAQSVGISVSK
AREITQMIKQSQEACMQVKAFRVSDTRVKTAAFAV"
misc_feature 285443..285886
/locus_tag="BARCL_0262"
/note="Fic/DOC family; Region: Fic; cl00960"
/db_xref="CDD:207264"
gene complement(287517..288209)
/gene="gst"
/locus_tag="BARCL_0263"
/db_xref="GeneID:10137386"
CDS complement(287517..288209)
/gene="gst"
/locus_tag="BARCL_0263"
/EC_number="2.5.1.18"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_004158532.1"
/db_xref="GI:319898439"
/db_xref="GeneID:10137386"
/translation="MLTLFHYPLSSASRFIRIILEEYCVATHLIEEHEWARRSEFLAL
NPAGHLPVLLAEREVPLSGAIVICEYLDETRGSLRQEKRFFPETSLERAEVRRLIDWF
LNKFENEATRHIVRERIYKREMPLAIGGGAPNSQILRNARANIVPHMNYLNWLCASRD
WLASSELSYADLVAAASVSVLDFLAEIDWKQFPAAREWYTRIKSRPSFRPLLMDRVRG
IAPSSHYADLDF"
misc_feature complement(287577..288206)
/gene="gst"
/locus_tag="BARCL_0263"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature complement(287994..288206)
/gene="gst"
/locus_tag="BARCL_0263"
/note="Glutathione S-transferase (GST) family, N-terminal
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by catalyzing
the conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic...; Region: GST_N_family;
cd00570"
/db_xref="CDD:48493"
misc_feature complement(order(288003..288008,288015..288017,
288144..288149,288156..288161,288165..288170,
288174..288176))
/gene="gst"
/locus_tag="BARCL_0263"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48493"
misc_feature complement(order(288018..288023,288057..288065,
288174..288176))
/gene="gst"
/locus_tag="BARCL_0263"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48493"
misc_feature complement(order(288003..288005,288012..288017,
288021..288026,288063..288065))
/gene="gst"
/locus_tag="BARCL_0263"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48493"
misc_feature complement(287604..287927)
/gene="gst"
/locus_tag="BARCL_0263"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cl02776"
/db_xref="CDD:207726"
misc_feature complement(order(287670..287672,287682..287684,
287691..287696,287703..287705,287901..287903,
287922..287924))
/gene="gst"
/locus_tag="BARCL_0263"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature complement(order(287757..287759,287898..287900,
287907..287912,287919..287924))
/gene="gst"
/locus_tag="BARCL_0263"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature complement(order(287670..287672,287679..287681,
287886..287891,287901..287903))
/gene="gst"
/locus_tag="BARCL_0263"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene complement(288356..288997)
/gene="cgpA"
/locus_tag="BARCL_0264"
/db_xref="GeneID:10138206"
CDS complement(288356..288997)
/gene="cgpA"
/locus_tag="BARCL_0264"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_004158533.1"
/db_xref="GI:319898440"
/db_xref="GeneID:10138206"
/translation="MQYPNLSELFVCNWIFIRGVPTMKFLPAEGPPEIAFAGRSNVGK
SSLINALVQQKNLARTSNTPGRTQELNYFIPDGFNGQSQNFPPIAFVDMPGYGFAEAP
KHLVNAWTHLIFDYLRGRTTLKRVYVLIDSRHGIKKNDIETFNLLDKAAVSYQIVLTK
SDKIKSDALKALIMITKTKLLKHPAAYPEILVTSAKKTFGLEELRTAIIQVIT"
misc_feature complement(288362..288973)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature complement(288362..288901)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature complement(288863..288886)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(288413..288418,288512..288514,
288518..288520,288722..288724,288797..288805,
288812..288820,288860..288880))
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature complement(288788..288808)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature complement(288797..288799)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature complement(288713..288724)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature complement(order(288629..288634,288641..288685,
288704..288715))
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature complement(288512..288523)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature complement(288410..288418)
/gene="cgpA"
/locus_tag="BARCL_0264"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene complement(288999..290837)
/gene="yidC"
/locus_tag="BARCL_0265"
/db_xref="GeneID:10138024"
CDS complement(288999..290837)
/gene="yidC"
/locus_tag="BARCL_0265"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="translocase subunit"
/protein_id="YP_004158534.1"
/db_xref="GI:319898441"
/db_xref="GeneID:10138024"
/translation="MEYNRNFFIAIGLSFVVFVAWHFLYIVPQQAKLQESKIIAHKLS
NHNSTFPANDMHFSNHGLKDEIVSITNHHVTPEIRKAELAKTNRVLIKTNELEGSINL
VGGKFDDLLLKKYRLTVDKTSPEIILLNPNGLTTTYFAEFSFISSSLPAKALPQSNTK
WQIEGNNTILTPSTPITLIYNNGQGQIFRRIFSVDNHYMFTIKDSISNESSSPIHLSS
YARIARAAPPEDTNATYFLHEGMIGIAGDSLKTEKYTALAELNPNPKNGQKSVIFSNV
TGGWVGITDKYWAVAVIPPQDKEYTSRFVYFDQLNTHYQSDLQSALLTVSPHETKTIT
NRLFAGAKRVEIINHYQNQLKINKFSLLIDWGWFDFITKPMFAFIDILYKYTGNFGVT
ILLITVLLKILLFPLAHKSYKSMAHIKLIQPMMLEIKEKYAHDRNKQQQAIIELYKTK
KINPLAGCWPVLIQFPIFFALYKVLYITIEMRHAPFFGWIKDLAAPDPTSIFNLFGLL
PYTVPVFLTLGAWPLIMGITMFLQMQMNPLPQDPTQVIVFRWIPVIFTVMLASFPAGL
VIYWAWNNILSIIQQSIIMKCQGVKIEFFDNLKAIVQKDTKKEIHK"
misc_feature complement(289038..290828)
/gene="yidC"
/locus_tag="BARCL_0265"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature complement(289122..289676)
/gene="yidC"
/locus_tag="BARCL_0265"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene complement(290843..291217)
/gene="rnpA"
/locus_tag="BARCL_0266"
/db_xref="GeneID:10138701"
CDS complement(290843..291217)
/gene="rnpA"
/locus_tag="BARCL_0266"
/EC_number="3.1.26.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ribonuclease P protein component"
/protein_id="YP_004158535.1"
/db_xref="GI:319898442"
/db_xref="GeneID:10138701"
/translation="MKQKHPCRIRKRVDFLAVRTGEKRRGPLFLLEIKPREKTAETKY
PLVARVGFTVTRKHGNAVQRNRIKRRLREAVRVGLVNEMEAGTDYVIVAHRDVLHAPF
TFLISELSRRIKLKTKNTTAIG"
misc_feature complement(290861..291217)
/gene="rnpA"
/locus_tag="BARCL_0266"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01313"
/db_xref="CDD:167209"
gene complement(291320..291454)
/gene="rpmH"
/locus_tag="BARCL_0267"
/db_xref="GeneID:10138487"
CDS complement(291320..291454)
/gene="rpmH"
/locus_tag="BARCL_0267"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_004158536.1"
/db_xref="GI:319898443"
/db_xref="GeneID:10138487"
/translation="MKRTYQPSKLVRKHRHGFRSRMATAGGRKVIAARRARGRKRLSA
"
misc_feature complement(291323..291454)
/gene="rpmH"
/locus_tag="BARCL_0267"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene complement(291627..291779)
/locus_tag="BARCL_0268"
/db_xref="GeneID:10138521"
CDS complement(291627..291779)
/locus_tag="BARCL_0268"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158537.1"
/db_xref="GI:319898444"
/db_xref="GeneID:10138521"
/translation="MQNKILYAYTKVMHNLSYILFILHFNFLNIYFSAENKYKLTCFL
NKIRIK"
gene 291963..293099
/gene="mrp"
/locus_tag="BARCL_0269"
/db_xref="GeneID:10137387"
CDS 291963..293099
/gene="mrp"
/locus_tag="BARCL_0269"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ATP/GTP-binding protein"
/protein_id="YP_004158538.1"
/db_xref="GI:319898445"
/db_xref="GeneID:10137387"
/translation="MDPITREAIRKELHKVKVPNFESDSNSNIVSLGLLSEIFIADGK
VFFSITVPDECAQEFEPLRRAAEEVVSAMEGVKAVMVTLTAEKKSRTFSSQVNENTSS
QVNENTTVFAPRRKAGGALLMKTPIEGVRHVIAVASGKGGVGKSIMAINVALALQDAG
FKTGLMDADIYGPSLPRLIGLVNQKPRMINDRKFQPLEKFGLKLMSMGFLIEEEKPIV
WRGPMVMAAVTKLLRGVLWGPLDILVVDMPPGTGDAQLTLVQQVQLTGVLIVSTPQDL
ALIDARKAIEMFMKVEVPILGLIENMSYFIAPDTGRRYDIFGYGGARSEAESRGIPFL
AEVPLDAALRSSSDDGVPIFVADPEGEHSNLYRTIIHQMKDRFS"
misc_feature 291978..292205
/gene="mrp"
/locus_tag="BARCL_0269"
/note="Domain of unknown function DUF59; Region: DUF59;
pfam01883"
/db_xref="CDD:202026"
misc_feature 292197..293003
/gene="mrp"
/locus_tag="BARCL_0269"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Mrp;
COG0489"
/db_xref="CDD:30835"
misc_feature 292359..292982
/gene="mrp"
/locus_tag="BARCL_0269"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
misc_feature 292377..292400
/gene="mrp"
/locus_tag="BARCL_0269"
/note="Walker A motif; other site"
/db_xref="CDD:73300"
gene 293165..293863
/gene="pyrF"
/locus_tag="BARCL_0270"
/db_xref="GeneID:10138317"
CDS 293165..293863
/gene="pyrF"
/locus_tag="BARCL_0270"
/EC_number="4.1.1.23"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_004158539.1"
/db_xref="GI:319898446"
/db_xref="GeneID:10138317"
/translation="MGTKMFERLIVGLDVSDMKQAEKLVTQLGDYVSFYKIGYQFVFS
GGMEFVRDLIQARKKVFFDMKLLDIDYTVARAVENIVKLGVSMLTIHAYPTAMQAAVA
AAQGSDLCLLGVTVLTSMDEVDLKNAGYKENLADLTVKRAEQAREAGMGGIVASAREA
ANLRKIIGTNMALVTPGIRPAGSDKGDQKRVMAPKEALNAGASHLVIARPIIQATNPL
AAAKAILAEMTDNH"
misc_feature 293189..293836
/gene="pyrF"
/locus_tag="BARCL_0270"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature order(293198..293200,293204..293206,293270..293272,
293276..293278,293351..293353,293357..293359,
293513..293518,293690..293692,293786..293791)
/gene="pyrF"
/locus_tag="BARCL_0270"
/note="active site"
/db_xref="CDD:73387"
misc_feature order(293276..293278,293282..293287,293354..293359,
293363..293368,293375..293380,293387..293392,
293435..293437,293468..293470,293513..293515,
293573..293575,293789..293791)
/gene="pyrF"
/locus_tag="BARCL_0270"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene 293912..294820
/locus_tag="BARCL_0271"
/db_xref="GeneID:10138457"
CDS 293912..294820
/locus_tag="BARCL_0271"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_004158540.1"
/db_xref="GI:319898447"
/db_xref="GeneID:10138457"
/translation="MSEKTYFIGAHAYSASVMEFGLYLVATPIGNLADITIRALQVLA
GVDILACEDTRVTRVLLDHYGIRRKLFLYHEHNAQKARLMLLAALAENKTVALVSDAG
TPLISDPGFRLVEEARKAGYKIIPIPGASALLAAIVTTGLPTDSFFFAGFLSAKRVQR
QKQLEQLKAVPATLVFYESPHRLVEALQDMVTIFASDRPAAICRELTKKFETVDVSTL
GNLVENYQKKDRVRGEIVVLVGEETNSLEEMSTNEINKILIELASVHSASKAAALAAK
KTGCKKQELFRRLTLLEGRGDEAKKT"
misc_feature 293963..294790
/locus_tag="BARCL_0271"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 293975..294631
/locus_tag="BARCL_0271"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(293996..293998,294212..294220,294227..294232,
294302..294307,294440..294442,294518..294520,
294524..294529,294611..294619)
/locus_tag="BARCL_0271"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(294014..294025,294029..294031,294218..294235,
294242..294247,294251..294256,294287..294289,
294293..294304,294308..294313,294320..294325,
294350..294364)
/locus_tag="BARCL_0271"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene 294879..295172
/locus_tag="BARCL_0272"
/db_xref="GeneID:10137388"
CDS 294879..295172
/locus_tag="BARCL_0272"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158541.1"
/db_xref="GI:319898448"
/db_xref="GeneID:10137388"
/translation="MKGFRIVERRFKTKCGEIDLIARRGNLVLIVEVKARSTLAEAMT
AVCRTSERRIEATADIWLAQQKDRSLLCMRFDLIAILPWCWPHHIPAFFEPYK"
misc_feature 294882..295160
/locus_tag="BARCL_0272"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:183560"
gene complement(295163..295300)
/locus_tag="BARCL_0273"
/db_xref="GeneID:10137389"
CDS complement(295163..295300)
/locus_tag="BARCL_0273"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158542.1"
/db_xref="GI:319898449"
/db_xref="GeneID:10137389"
/translation="MQTFHNHPHFSLIMKNFSSFSLSVYAHYAQQQNRISLLMLKYIY
L"
gene 295776..296570
/gene="proC"
/locus_tag="BARCL_0274"
/db_xref="GeneID:10137390"
CDS 295776..296570
/gene="proC"
/locus_tag="BARCL_0274"
/EC_number="1.5.1.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Pyrroline-5-carboxylate reductase"
/protein_id="YP_004158543.1"
/db_xref="GI:319898450"
/db_xref="GeneID:10137390"
/translation="MRIGFLGTGKISAAMVDGLMASSFDVQSIIVSPRNAERAERLAR
VYKKVTIAENNQKLLDVSDCVFLCLRNQIAEEILRSLYFRSDQLVVSVLAMAPMAEIE
GWINHKVYRAIPLPFIAECKNVTPIYPDHPFLRAMFNALGGALVLNEEDQFNFFMTAG
SLMGVYFNFIETAHQWLVKKGLDPLYSADFLAMMFGNLADEMRKTKVANHSTAVNFSY
LEREFSTKGGTNELLSDCFSHQGGRRALTMALEKTLQKIKVYPQTK"
misc_feature 295776..296549
/gene="proC"
/locus_tag="BARCL_0274"
/note="pyrroline-5-carboxylate reductase; Reviewed;
Region: PRK06476"
/db_xref="CDD:180583"
misc_feature 295776..>296117
/gene="proC"
/locus_tag="BARCL_0274"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 296723..297922
/locus_tag="BARCL_0275"
/db_xref="GeneID:10138430"
CDS 296723..297922
/locus_tag="BARCL_0275"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="flagellin"
/protein_id="YP_004158544.1"
/db_xref="GI:319898451"
/db_xref="GeneID:10138430"
/translation="MGTSLLTNKSAMTALQTLRSIDANLDRSKDRVSTGLRISNASEN
TAYWSISSMMRHDSNTMSAIVDAINLGKEQVGIADTAIGLTKEALDDIQKSMVSAREK
GSDDIAKIQDSIIGNMKNISNAVQSASFGGKNILSNGGQTVGMAAGYRREGTAVYVDM
IDVGGSELNFGTIGSDGTIDMSQGVLGGIFGTSKGDEGEDVVGKGIGAFSAAHATYKG
LEDTLRNAEADLAKAIAKYGESPEDEPGKAIIEKAKQAVETAKTGLKDGQEAYNKAKG
EFQTVLDGMTLADFTELKGLGELHSDIQRMIMTSVQNTVRDAVNVTLTAGSKIGAAVN
LVNIQLNFVKKLLDNVEVGIGALVDADMNAESAKLAALQVQQQLGIQALSIANQGSQN
ILALFRN"
misc_feature 296729..297916
/locus_tag="BARCL_0275"
/note="Flagellin and related hook-associated proteins
[Cell motility and secretion]; Region: FlgL; COG1344"
/db_xref="CDD:31535"
misc_feature 296741..297142
/locus_tag="BARCL_0275"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
gene complement(298195..299856)
/gene="etfD"
/locus_tag="BARCL_0276"
/db_xref="GeneID:10137391"
CDS complement(298195..299856)
/gene="etfD"
/locus_tag="BARCL_0276"
/EC_number="1.5.5.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein-ubiquinone
oxidoreductase"
/protein_id="YP_004158545.1"
/db_xref="GI:319898452"
/db_xref="GeneID:10137391"
/translation="MSADIHTQRETIECDIVIVGGGPAGLSAAIRLKQINPDFSIIIL
EKSTEIGAHILSGAVIDPIGINKLLPEWSSEQNHPFKTPVISDQFFLLTSKKAQIFPN
ILRPPILSNNGCYIVSLGNVCRWLSKKAEELGVEIYPGFPVSDILCNDHGSVIGVLTG
DMGIEKNGTPGKNYVPGIALLAKYTLIAEGARGSIAKQLIQKFNLSKDREPQKFGLGL
KELWEIDPQKHKLGLIQHFTGWPLDNYTGGGGFLYHQEDNLISVGFVVHLDYKNPYLS
PFEEFQRFKTHPKLYELFKGAKRLAYGARTITEGGWQSVPKLTFPGGVLIGCSAGFVN
VPRIKGSHNAILSGILAAEKIATALTQGRAHDEVTEIEEHWRKGPIGKDLYTVRNVKP
LWAKYGTKYGIKLAGFDLWWQQFFRFSLFRTLPHRKEDYACLEPEEKFHPIAYPKPDG
VVTFDRLSSVALSNTHHETNQPCHLKIISIEKQKSSEYAIYGGPSTRYCPAAVYEWLK
CDDHETYIINASNCIHCKTCDIKDPNQNINWTCPQGNEGPVYQNM"
misc_feature complement(<299251..299829)
/gene="etfD"
/locus_tag="BARCL_0276"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(298456..299826)
/gene="etfD"
/locus_tag="BARCL_0276"
/note="Dehydrogenases (flavoproteins) [Energy production
and conversion]; Region: FixC; COG0644"
/db_xref="CDD:30989"
misc_feature complement(298333..298665)
/gene="etfD"
/locus_tag="BARCL_0276"
/note="Electron transfer flavoprotein-ubiquinone
oxidoreductase; Region: ETF_QO; pfam05187"
/db_xref="CDD:203194"
misc_feature complement(298204..>298437)
/gene="etfD"
/locus_tag="BARCL_0276"
/note="Ferredoxin-like protein [Energy production and
conversion]; Region: FixX; COG2440"
/db_xref="CDD:32561"
gene complement(299860..300789)
/gene="etfA"
/locus_tag="BARCL_0277"
/db_xref="GeneID:10138100"
CDS complement(299860..300789)
/gene="etfA"
/locus_tag="BARCL_0277"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit alpha"
/protein_id="YP_004158546.1"
/db_xref="GI:319898453"
/db_xref="GeneID:10138100"
/translation="MAILLLAEHNNHSLAEETAKALTAAQLIGNDIDILVCGMKVHAV
AENCAQLVGVRQVLVAEADYLAHQLAEPIAATIVEQANDYDVIMAASTTNGKNIMPRV
AALLDLMQISDIIAVVAPDTFKRPIYAGNAIETVRTNDRQKIITVRTASFLPTPKGNA
APIKTMTPAPNPNLSFFVKEEINKSNRPDLTSARIIVSGGRGLGSEEQFKALLLPLAT
KLGAALGASRAAVDAGYAPNDWQIGQTGKVVAPKLYIAIGISGAIQHLAGIMNAQTIV
AINNDEEAPIMHIADYALIGDLHHIIPELEKAL"
misc_feature complement(299863..300789)
/gene="etfA"
/locus_tag="BARCL_0277"
/note="Electron transfer flavoprotein, alpha subunit
[Energy production and conversion]; Region: FixB; COG2025"
/db_xref="CDD:32208"
misc_feature complement(300301..300783)
/gene="etfA"
/locus_tag="BARCL_0277"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:30170"
misc_feature complement(299971..300231)
/gene="etfA"
/locus_tag="BARCL_0277"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene complement(300841..301587)
/gene="etfB"
/locus_tag="BARCL_0278"
/db_xref="GeneID:10138098"
CDS complement(300841..301587)
/gene="etfB"
/locus_tag="BARCL_0278"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit beta"
/protein_id="YP_004158547.1"
/db_xref="GI:319898454"
/db_xref="GeneID:10138098"
/translation="MKIIVAVKRVVDHNIKIRVKSDSTGVDLSNVRMSMNPFDEIAVE
EAIRQKEAGKISEIILVSIGPEAAQETLRTGLAMGADRAILVKTDEILEPLTIAKTLK
VIILEEKPDMVFLGKQAIDDECNQTGQMLAGLLSWGQATFASCLNIENGQAQITREID
NGTQTICLPLPMVMTVDLPLNEPRYTSLPNIIKAKKKPIEQKDIANLCVNTQKRLTIL
SVEEPKPRAAGIKVANVTELISALKKTNCI"
misc_feature complement(300979..301584)
/gene="etfB"
/locus_tag="BARCL_0278"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:30169"
misc_feature complement(order(301207..301218,301231..301236,
301240..301245,301399..301401,301471..301473,
301480..301482,301567..301572))
/gene="etfB"
/locus_tag="BARCL_0278"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:30169"
misc_feature complement(301039..301488)
/gene="etfB"
/locus_tag="BARCL_0278"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:201550"
gene 301921..302577
/locus_tag="BARCL_0279"
/db_xref="GeneID:10138099"
CDS 301921..302577
/locus_tag="BARCL_0279"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158548.1"
/db_xref="GI:319898455"
/db_xref="GeneID:10138099"
/translation="MNIKHDVLNPAKHKHYSISTVDQTQKIQVPSEIKMSDISAKLRY
VYEKMQIKKTHNHLAKQISVDNSIKSYLDEISRAILAEHYARNQKEKKLFEDLEQIKK
LVKNLLYEKEGLQKTIIKQHKTSSQSINSVVRHLAHMAGEENKRSQPHERFNTLKKDR
IQPVQTNTVGTLKQENISSLSTDFVKPSKNFLTNKNLSDTQLLSGFFTGVRRAFSFKE
"
gene 302791..303711
/locus_tag="BARCL_0280"
/db_xref="GeneID:10137392"
CDS 302791..303711
/locus_tag="BARCL_0280"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_004158549.1"
/db_xref="GI:319898456"
/db_xref="GeneID:10137392"
/translation="MSIYLPIAELSLSMLILIGMGAVVGFFSGLFGIGGGFLITPLLI
FYNIPPTIAVGTGANQVIASSVTGAITHFKRRTLDIKLGILLVIGGGIGSLIGIQIFS
LLRKLGQLDFIISLLYVFLLGSIGSLMMVESLCAMMRQRKEKKITTHSPSYYNWIDRL
PFKIHFQASMICVSIIPVLGIGFVVGLLSSIMGVGGGFITVPALIYLLRVPTGVVVGT
SLFQMTFVSAFTTVLQSVSNQSVDIVLAFLLTIGGGIGAQYGVRAGQKLKAEQLRMAL
AFLVIIVCMRLAFQLFIRPDNLFSLVILMR"
misc_feature <303268..303651
/locus_tag="BARCL_0280"
/note="Sulfite exporter TauE/SafE; Region: TauE;
pfam01925"
/db_xref="CDD:202049"
misc_feature <303331..303666
/locus_tag="BARCL_0280"
/note="Predicted permeases [General function prediction
only]; Region: COG0730"
/db_xref="CDD:31074"
gene 303741..304514
/locus_tag="BARCL_0281"
/db_xref="GeneID:10137393"
CDS 303741..304514
/locus_tag="BARCL_0281"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158550.1"
/db_xref="GI:319898457"
/db_xref="GeneID:10137393"
/translation="MVSWFCFIPFSMKAQGSEEVVSEEKEVVQIIVTTNTITVGANFS
GHDLYIAGVLENMNPLFRQQNRYDVIVSLEGQTRSMIVREKKRKAGMWINADCVTFKN
APLFYSMVTTREIDNITDAESYKRLGLGLSYFFLSTDEKDQEKTRSFRNELIELQKAK
NLYHEEAGGVYFGSGSLFTAHFQLPANVPVGRYHVNAYLFRDGQYISSATTTLEIVKA
YVAYTIFHEARKHSFWYGIVAVFVAMATGFLCRFAFRKD"
misc_feature 303861..304511
/locus_tag="BARCL_0281"
/note="Putative transmembrane protein (Alph_Pro_TM);
Region: Alph_Pro_TM; pfam09608"
/db_xref="CDD:150316"
gene 304876..306303
/gene="xseA"
/locus_tag="BARCL_0282"
/db_xref="GeneID:10137394"
CDS 304876..306303
/gene="xseA"
/locus_tag="BARCL_0282"
/EC_number="3.1.11.6"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII large subunit"
/protein_id="YP_004158551.1"
/db_xref="GI:319898458"
/db_xref="GeneID:10137394"
/translation="MDLFIEKSVVTNVAEFSVSEIAGALKRVVEEKFGYVRVRGEISG
YRGVHASGHAYFALKDDKARLEAVIWRGVIEKLQFPPEEGIEVVAVGKLTTYQGSSKY
QIIIETLEPTGVGALMTLLENRKKKLADEGFFDDAKKKTLPYMPRIIGVITSPTGAVI
RDIIHRISDRFPLHILVWPVRVQGETSGREVAAAITGFNALPLDGVLSKPDLIIVARG
GGSLEDLWGFNDEAVVHAVSASAIPIISAVGHETDWTLIDYVADWRAPTPTGAAERAV
PVKFDLETRLASLSLRFRVGLARYFSFYKQKLSSVVRGLPTVDQLFALPRRSFDEISS
RLQRALCVNYDKKRFYFYTLVIRLCPRLLNIETAQQNTKEYTVRLHHAFLRSVEKQRV
QIEMAFRLLKNTSYQSILERGFVLALGQENKPIKRLVQFPRAVKISLRFFDGEINVST
CNSAPKQFPKPRRLKQQRDDQGTLF"
misc_feature 304906..306219
/gene="xseA"
/locus_tag="BARCL_0282"
/note="exodeoxyribonuclease VII large subunit; Reviewed;
Region: xseA; PRK00286"
/db_xref="CDD:178962"
misc_feature 304978..305214
/gene="xseA"
/locus_tag="BARCL_0282"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature order(304984..304986,305131..305133,305137..305139,
305143..305145,305203..305205)
/gene="xseA"
/locus_tag="BARCL_0282"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature order(304999..305007,305038..305049,305053..305055,
305071..305079,305083..305085,305128..305130,
305149..305157,305182..305190)
/gene="xseA"
/locus_tag="BARCL_0282"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
gene 306318..306908
/gene="tag"
/locus_tag="BARCL_0283"
/db_xref="GeneID:10138691"
CDS 306318..306908
/gene="tag"
/locus_tag="BARCL_0283"
/EC_number="3.2.2.20"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA-3-methyladenine glycosylase I"
/protein_id="YP_004158552.1"
/db_xref="GI:319898459"
/db_xref="GeneID:10138691"
/translation="MLGEGLLMGKDGKIRCSWAGTDPLYCAYHDYIWGKPVFDDRHLF
EQICLEGFQAGLSWLTILRKISNFHRAFDCFDFEKIAHYDEEKIEILMQDKGIIRHQG
KIRSVINNALKAQKIIAEWSSLSRYFWSFQTLQSERHEKKDFQIWKANSVTPASIRLS
KDLKKRGWTFVGPITCYAFMQAVGIVNDHLEGCFCR"
misc_feature 306369..306905
/gene="tag"
/locus_tag="BARCL_0283"
/note="Methyladenine glycosylase; Region: Adenine_glyco;
pfam03352"
/db_xref="CDD:190612"
gene 307791..309509
/locus_tag="BARCL_0284"
/db_xref="GeneID:10138595"
CDS 307791..309509
/locus_tag="BARCL_0284"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic
oligopeptide-binding protein"
/protein_id="YP_004158553.1"
/db_xref="GI:319898460"
/db_xref="GeneID:10138595"
/translation="MSMNMFLQQTLAKTPVDTFVMAWNLDAISTFDPAQTNDIYSHEI
ILNICSSMSMNMFLQQTLAKTPVDTFVMAWNLDAISTFDPAQTNDIYSHEIILNICSS
LVDYSPNDATKIVPNLAKSWDVSGENNTIITFHLRDDLKFVDGRSASASDLVWSMKRV
VKLDMAGAALFKEYGITQQTVDAAIQALNEKTVVMKFDKPYPAELILNNIAANPVALL
LDRETIMKHEKNGDIGNKYLTTHSACVGPYQLLSWRVGEAVLLGVNSHYWGEEPKLKK
VLIRHVAEPSTQRLLLEKKDVDVARDLTVEILEDLQATTDIRIEKLLLPAMFYWGFNM
THPILAHEKVRLAMRYLIDYEGLGKTVLKGIGIPRSSFMPIGALGALSEKEGLPFKLD
LKRAKQLLTEAGYPNGFEISVLIGNSDALQLIQSIQDNAAKVGIRLKIKRLAGTQLFS
KVSTRAFETIILGWNSESLDPHTTAARIVYNPDNRFESKNTAYPSWQHGYFDEKMNQQ
IKDALFEKDQKKRIQRYVDLQLELMQKGPYAFLYQKYNVVAVSPVIKKWVWNSVPRVF
YNAVEK"
misc_feature 307986..309461
/locus_tag="BARCL_0284"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_7; cd08512"
/db_xref="CDD:173877"
misc_feature 308127..309248
/locus_tag="BARCL_0284"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 309813..311435
/gene="dppA"
/locus_tag="BARCL_0285"
/db_xref="GeneID:10137395"
CDS 309813..311435
/gene="dppA"
/locus_tag="BARCL_0285"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter, periplasmic
oligopeptide-binding protein"
/protein_id="YP_004158554.1"
/db_xref="GI:319898461"
/db_xref="GeneID:10137395"
/translation="MFKRICTILGLIAFFSGLMPIVLNASPKNTLVMAWNIDSITNFD
PAQSVEMVTSELLTNICSALVQYHPDNPMVIHPAMAQSWDVSDDGKKIIFHLRDDLKF
DDGTVATAQDLAWSMQRIVKLGLGYAQSLKDYGFTKDNVETNIQALDDKTLQMQFDKF
YPLRLILTVIGQSYASALLDRRKIEMHAVNDDMGNKYLATHSACVGPYKLVRWVPGER
VVLQATQHYWGGAPKIEKILILHMAESASQRFLLEKGVVDIARDLSSEDILDIEKQGG
PITIYRVLRPQSVYLSLNNKNVIFANEKVRLAFRYLVDYDTLGKTVLKGIAIPRASYM
PLGVPGALDEKEGVPFKLDLKKAKQLIYEAGYLNGFKANLLIGSLTYMSSVAQTIQEN
AHKIGIELTIEKMAQAQLLSRVRGGNYDIAIMSWNTADPDGHASSWHHVFNPDPTFTE
QHSMHLAWRAGYYDAKANKMVMDALFEEDKNKRLEQYRELQNYIFNHGPMAYLFQTYY
TIGVGPTVKKWVWNSFRLYYNKAEKYVRSNDE"
misc_feature 309891..311369
/gene="dppA"
/locus_tag="BARCL_0285"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_7; cd08512"
/db_xref="CDD:173877"
misc_feature 310035..311141
/gene="dppA"
/locus_tag="BARCL_0285"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 311529..312602
/gene="dppB"
/locus_tag="BARCL_0286"
/db_xref="GeneID:10138085"
CDS 311529..312602
/gene="dppB"
/locus_tag="BARCL_0286"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004158555.1"
/db_xref="GI:319898462"
/db_xref="GeneID:10138085"
/translation="MMASSLKIDMAVSPKQKNLYIWTFFLKIFKLLISVFITLIGLIT
ITFFIGRLLPLDPVIAILGDNISQEAYDKMFYKLGLDQPLIIQYWTYLQHIFLFDFGD
ALVSGRPVLTDIMNVFPPTFELATVAIIIGTSFGIPFGVIAAMYRNSPIDYFVRFFTL
FVYSTPTFWLGLMALLVFYTKLDWIGGPGRIDFIYEYSFEAKTGFFLLDTAMQGKWEA
FGNAFSHIIMPALILAFGAMAYISRMTRGFMIEQLNQEYIITARVKGLSWRQTVWGHA
FRNAAVQIITVVGLSYAFLLEGAVLTETVFAWPGFGRYLTNALLAGDMNAVIACTLLI
GCFFIVINLLSDLLYRIFDPRIR"
misc_feature 311679..312599
/gene="dppB"
/locus_tag="BARCL_0286"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 311880..312548
/gene="dppB"
/locus_tag="BARCL_0286"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(311928..311933,311940..311945,311958..311960,
311991..312002,312006..312035,312042..312047,
312051..312053,312234..312239,312243..312245,
312249..312251,312258..312263,312267..312269,
312279..312284,312291..312293,312342..312344,
312384..312389,312396..312398,312417..312428,
312435..312440,312465..312470,312498..312503,
312510..312515,312519..312524,312531..312536,
312543..312548)
/gene="dppB"
/locus_tag="BARCL_0286"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(312009..312053,312417..312434)
/gene="dppB"
/locus_tag="BARCL_0286"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(312051..312053,312219..312221,312435..312437,
312459..312461,312468..312470,312498..312500)
/gene="dppB"
/locus_tag="BARCL_0286"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(312294..312332,312348..312353,312363..312365)
/gene="dppB"
/locus_tag="BARCL_0286"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 312606..313535
/gene="dppC"
/locus_tag="BARCL_0287"
/db_xref="GeneID:10138086"
CDS 312606..313535
/gene="dppC"
/locus_tag="BARCL_0287"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004158556.1"
/db_xref="GI:319898463"
/db_xref="GeneID:10138086"
/translation="MTILHENESQSSFSLRCWLNRSVPQSAIQANIQKFYHSLIRFFH
NISTLFGFVIIFSIILCAIFAPWIATHDIMSNDLAHRLLPPSKLHYLGTDELGRDIFS
RLIFGMRITLYIVFLTTIIVAPIGLIVGTTAGYIGGWVDTIFMRIIDIFLAFPNLILA
LAFSAALGPGIENAAIAISIAAWPPIARLARAETLTIRSSDYVSAIRLQGASFWRIIL
FHIAPMCIPSVIVRLTLNMSAIILMAAGLGFLGLGAQPPSPEWGVMLSTGREFMMTSW
WLAAVPGCAILLTSLAFNLLGDGLRDILDPRNG"
misc_feature 312726..312863
/gene="dppC"
/locus_tag="BARCL_0287"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 312753..313520
/gene="dppC"
/locus_tag="BARCL_0287"
/note="nickel ABC transporter, permease subunit NikC;
Region: nickel_nikC; TIGR02790"
/db_xref="CDD:131837"
misc_feature 312927..>313319
/gene="dppC"
/locus_tag="BARCL_0287"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(312975..312980,312987..312992,313005..313007,
313035..313046,313050..313079,313086..313091,
313095..313097,313146..313151,313155..313157,
313161..313163,313170..313175,313179..313181,
313191..313196,313203..313205,313254..313256,
313296..313301,313308..313310)
/gene="dppC"
/locus_tag="BARCL_0287"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 313053..313097
/gene="dppC"
/locus_tag="BARCL_0287"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(313206..313244,313260..313265,313275..313277)
/gene="dppC"
/locus_tag="BARCL_0287"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 313528..314412
/gene="oppD"
/locus_tag="BARCL_0288"
/db_xref="GeneID:10138087"
CDS 313528..314412
/gene="oppD"
/locus_tag="BARCL_0288"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="oligopeptide transport ATP-binding protein"
/protein_id="YP_004158557.1"
/db_xref="GI:319898464"
/db_xref="GeneID:10138087"
/translation="MDKKLLEIENLHISFPTTDGISDVVRGVSFSVGKEKVGIVGESG
SGKSMTGRAILKLNPKSAIIKAKKMCFDDIDLLSASEYQMRTIRGKRISMILQDPKYS
LNPLIRIGDQIIEAYRIHYRVSKMDAWERTISMLESVHIRNPEHVMRLFPHEISGGMG
QRVMIAMMLIPKPDLIIADEPTSALDITVRSQVLRVLDELVTKSGMGLIFISHDLNMI
ANFCDRVLVMYAGRILEELSASDLSRACHPYTKALLASLPRLDNPVDILAVPERDPSW
LDGPTIVNGVERGCCDQL"
misc_feature 313534..314319
/gene="oppD"
/locus_tag="BARCL_0288"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 313540..314235
/gene="oppD"
/locus_tag="BARCL_0288"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 313648..313671
/gene="oppD"
/locus_tag="BARCL_0288"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(313657..313662,313666..313674,313816..313818,
314062..314067,314164..314166)
/gene="oppD"
/locus_tag="BARCL_0288"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 313807..313818
/gene="oppD"
/locus_tag="BARCL_0288"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 313990..314019
/gene="oppD"
/locus_tag="BARCL_0288"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 314050..314067
/gene="oppD"
/locus_tag="BARCL_0288"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 314074..314085
/gene="oppD"
/locus_tag="BARCL_0288"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 314152..314172
/gene="oppD"
/locus_tag="BARCL_0288"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 314230..>314397
/gene="oppD"
/locus_tag="BARCL_0288"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 314399..315184
/gene="dppF"
/locus_tag="BARCL_0289"
/db_xref="GeneID:10138369"
CDS 314399..315184
/gene="dppF"
/locus_tag="BARCL_0289"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004158558.1"
/db_xref="GI:319898465"
/db_xref="GeneID:10138369"
/translation="MINCENIIDVSDLSVTFGRGYQAVEVLKNVNFHIKRGEAYGLIG
ESGCGKSTILNALVGLISCSRGCFIFDGKEVLQKKNKAFLRRIQMVFQDPYASLHPRK
MVYTALSETLSIHNMDNKKERINDVLSAVGLGSSFFYRYPHELSGGQRQRVALARALI
IEPEVLLLDEPTSALDVSVQAEILNLLKSLREEKHLTYLMVSHDLSVIAHICGRAGIM
HKGVILEELSNNDLRHLHAKNDYTKMFFESSIEPIVHREKRAL"
misc_feature 314417..315076
/gene="dppF"
/locus_tag="BARCL_0289"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 314420..315154
/gene="dppF"
/locus_tag="BARCL_0289"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 314528..314551
/gene="dppF"
/locus_tag="BARCL_0289"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(314537..314542,314546..314554,314672..314674,
314903..314908,315005..315007)
/gene="dppF"
/locus_tag="BARCL_0289"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 314663..314674
/gene="dppF"
/locus_tag="BARCL_0289"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 314831..314860
/gene="dppF"
/locus_tag="BARCL_0289"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 314891..314908
/gene="dppF"
/locus_tag="BARCL_0289"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 314915..314926
/gene="dppF"
/locus_tag="BARCL_0289"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 314993..315013
/gene="dppF"
/locus_tag="BARCL_0289"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
gene complement(315704..315780)
/locus_tag="BARCL_tRNA38"
/db_xref="GeneID:10138088"
tRNA complement(315704..315780)
/locus_tag="BARCL_tRNA38"
/product="tRNA-Met"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138088"
gene 315951..316907
/locus_tag="BARCL_0290"
/db_xref="GeneID:10137942"
CDS 315951..316907
/locus_tag="BARCL_0290"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158559.1"
/db_xref="GI:319898466"
/db_xref="GeneID:10137942"
/translation="MAPRVAVLGCGYWGKNHIQTLQSLGVLTAVSDVDSNRAAHFASM
YGVMAITPDNLFTHKDIDALILALPPQFHTENVMRAVKNGKDVLVEKPIALNIADAEL
QVRTANEYGRIFMVGHILRFHPAFEKLCELIEQGALGDICYIYSHRLGFGKFHTQSSA
LWDLAPHDLSMILALTKCEPLRVHGEGSAVINRFSDFAHIHMTFPNGMRSHLFTSRLS
PYCERRLTVVGTKAMLVFDDMEQWNRKLAFHRFSVWQENKEWVSNTDKINYIDICEGL
PLTYELQHFLNCIETRQSPRTNGKDAIAILRVLTAASVDHYG"
misc_feature 315951..316886
/locus_tag="BARCL_0290"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature 315960..316304
/locus_tag="BARCL_0290"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
gene 316955..318073
/locus_tag="BARCL_0291"
/db_xref="GeneID:10137396"
CDS 316955..318073
/locus_tag="BARCL_0291"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158560.1"
/db_xref="GI:319898467"
/db_xref="GeneID:10137396"
/translation="MQFIDLGAQRARIEDKINAAIAHVIASGQYILGPKVKEFEDRLA
DYLGVKHVIACANGTDALMMPLMAKNIGPGDAVFCPSFTFSATAEVAALVGAEPVFVD
VRSDTFNIDVDKLCEAIEMIKKEGRLKPKAIIAVDLFGLPADYDKISLVAERENLFVI
EDTAQSIGGKSGNVMCGAFGDVAATSFYPAKPLGCYGDGGAMMTNDDGMEALLRSLLF
HGKGKTQYDNVRIGMNSRLDTIQAAILLEKLVIFEDEIEKRAAIAQRYSENLKDIVEV
PEVKTDVCCAYAQYTIKVKNRDKLKAYLQKNGIPTMIYYNTPLHLQPAYKNFTYVKDS
LSVSEYLGSCVLSLPMYPYLSQGDQDKIIQCIRDFYSV"
misc_feature 316955..318067
/locus_tag="BARCL_0291"
/note="Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall biogenesis
[Cell envelope biogenesis, outer membrane]; Region: WecE;
COG0399"
/db_xref="CDD:30748"
misc_feature 317003..318055
/locus_tag="BARCL_0291"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(317126..317131,317438..317440,317447..317449,
317510..317512,317522..317527,317894..317896)
/locus_tag="BARCL_0291"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(317126..317131,317201..317203,317438..317440,
317447..317449,317510..317512,317525..317527)
/locus_tag="BARCL_0291"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 317525..317527
/locus_tag="BARCL_0291"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene complement(318144..318791)
/locus_tag="BARCL_0292"
/db_xref="GeneID:10137397"
CDS complement(318144..318791)
/locus_tag="BARCL_0292"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158561.1"
/db_xref="GI:319898468"
/db_xref="GeneID:10137397"
/translation="MLIQSILFFILGVATISWLLVLVSPLIWRKVLHFAYQSVSAKIP
LSLIEIQANYNFLCAQHAVELARHEQQYDSLQKKYAQQKIQLSQKKEQLYCSYSPAQY
TPFPPTKIEKVENKDNVLAIDILIREIKAMQEKIAHYEQRLKNIQIDELDTAAKDQLL
NELCEETKELAATLAAHIALKEGKDSSLNKLIKSFKKNNDLASYIHKKIANTKIE"
gene complement(318815..319411)
/locus_tag="BARCL_0293"
/db_xref="GeneID:10137398"
CDS complement(318815..319411)
/locus_tag="BARCL_0293"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158562.1"
/db_xref="GI:319898469"
/db_xref="GeneID:10137398"
/translation="MVHSLLSRWYMNIVLFISLLFTTINIVNAQLPPIEEHDQNFSLQ
EIIASGHNFFGKTAGSIAIAIENIFSRYGHPNAYILGEEASGAFFAGLTYGEGKIFTK
SYGQHKIFWQGPSVGWDFGGQGSRAMILVYDLNKINNLWGRYGGISGSAYLIAGVGFH
VLKRNNTLLIPIRTGVGARLGINMGYLKLTPTPTWNPF"
misc_feature complement(318818..319297)
/locus_tag="BARCL_0293"
/note="Protein of unknown function (DUF1134); Region:
DUF1134; pfam06577"
/db_xref="CDD:148279"
gene 319624..320262
/locus_tag="BARCL_0294"
/db_xref="GeneID:10137399"
CDS 319624..320262
/locus_tag="BARCL_0294"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158563.1"
/db_xref="GI:319898470"
/db_xref="GeneID:10137399"
/translation="MTLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGGAD
EDALQLVRLSVANASARLQFARLAFGSAGGVEDKIDTDFAKQISQQYMKEEKATLKWQ
ASSLLLQKDEVKLLLNLLLIANTIVSHNGEISVIILQDTNKRVFRFEICGKILRTPSR
FIELYNGQMSEELIDAHVVQLYYTILLAEITTMKISIHETSDCIILESVKKL"
misc_feature 319624..320241
/locus_tag="BARCL_0294"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5385"
/db_xref="CDD:34947"
gene complement(320412..321113)
/gene="ctrA"
/locus_tag="BARCL_0295"
/db_xref="GeneID:10137400"
CDS complement(320412..321113)
/gene="ctrA"
/locus_tag="BARCL_0295"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cell cycle transcriptional regulator CtrA"
/protein_id="YP_004158564.1"
/db_xref="GI:319898471"
/db_xref="GeneID:10137400"
/translation="MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYD
YDIILLDLNLPDISGYDVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKP
FHKDELIARIHAVVRRSKGHAQSVIITGDLTVNLDAKTVEVAGHPVHLTGKEYQMLEL
LSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRG
YVLRDPVEENIRKTA"
misc_feature complement(320442..321113)
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(320766..321104)
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(320808..320813,320820..320822,
320877..320879,320937..320939,320961..320963,
321090..321095))
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(320961..320963)
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(320937..320945,320949..320954))
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(320805..320813)
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(320451..320735)
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(320460..320462,320475..320477,
320511..320516,320538..320540,320547..320549,
320601..320606,320661..320663))
/gene="ctrA"
/locus_tag="BARCL_0295"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 321656..322042
/locus_tag="BARCL_0296"
/db_xref="GeneID:10138046"
CDS 321656..322042
/locus_tag="BARCL_0296"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158565.1"
/db_xref="GI:319898472"
/db_xref="GeneID:10138046"
/translation="MKPRQNMVRLKMFQVREKRREITQLEMMITEFERMVLDLEEQIV
NEERKSGNSDIHHFAYSAFARAARQRRDNLTASIRDLKLQKTNAEITLKEINTEFQRA
QILEKNGAGTVTDDHRIFTQLHSMIG"
gene complement(322171..322446)
/locus_tag="BARCL_0297"
/db_xref="GeneID:10137401"
CDS complement(322171..322446)
/locus_tag="BARCL_0297"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158566.1"
/db_xref="GI:319898473"
/db_xref="GeneID:10137401"
/translation="MTDLIKLQMKYVIGPDGSPLTITDLPPTTTKRWVIRRKAEVVAA
VRGGLLSLDEACQRYTLTVEEFLSWQSSIDEHGLAGLRTTKTQQYRH"
misc_feature complement(322177..322446)
/locus_tag="BARCL_0297"
/note="Protein of unknown function (DUF1153); Region:
DUF1153; pfam06627"
/db_xref="CDD:148310"
gene 322707..323936
/gene="trmU"
/locus_tag="BARCL_0298"
/db_xref="GeneID:10137402"
CDS 322707..323936
/gene="trmU"
/locus_tag="BARCL_0298"
/EC_number="2.1.1.61"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tRNA(5-methylaminomethyl-2-thiouridylate)-
methyltransferase"
/protein_id="YP_004158567.1"
/db_xref="GI:319898474"
/db_xref="GeneID:10137402"
/translation="MFLNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGI
TLQLYDHGAATHRVGACCAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESY
AHGETPVPCVSCNQTVKFADLLATAYELGADALATGHYIRSRVHGAHRALFRPLDADR
DQSYFLFATTQEQIDYLRFPLGDLSKDRVREIATEMGLVVANKHDSQDICFVPQGRYS
DVITKLRPEVANPGVIVHIDGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVEN
ARVIVGPREMLETRRLFLRDVNWLGDERLDNFPLDGIDVAVKVRSTRPPRPARLHYKQ
GLFSVDLLESESGIAPGQACVLYNENSYEARILGGGFITRSEHAADTEKMLKQVLCNL
ETKSSTFFKGKTTIACK"
misc_feature 322740..323834
/gene="trmU"
/locus_tag="BARCL_0298"
/note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis]; Region:
TrmU; COG0482"
/db_xref="CDD:30830"
misc_feature 322752..323822
/gene="trmU"
/locus_tag="BARCL_0298"
/note="tRNA methyl transferase. This family represents
tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
which is involved in the biosynthesis of the modified
nucleoside 5-methylaminomethyl-2-thiouridine present in
the wobble position of some tRNAs; Region: tRNA_Me_trans;
cd01998"
/db_xref="CDD:30185"
misc_feature order(322764..322772,322776..322787,322839..322841,
322845..322847)
/gene="trmU"
/locus_tag="BARCL_0298"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30185"
gene complement(323984..324799)
/locus_tag="BARCL_0299"
/db_xref="GeneID:10138630"
CDS complement(323984..324799)
/locus_tag="BARCL_0299"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_004158568.1"
/db_xref="GI:319898475"
/db_xref="GeneID:10138630"
/translation="MTLNITTIHEANDPRLEAYRNIREKDLVGRQHQFIAEGKVILSA
LLHSKEFSAVSLLVVAARLLGIMPILKETKPTCPIYCVPQKIMDDIAGFHVHRGMLGI
GERKKLPSLKEFLQNLPEKALIPVLCGISNHDNMGAIFRNAAAFASTGIIVDKTSCDP
LYRKSIRVSAGAALNVPYTQGDDIDSIITALSNADFHLYALSPSAPRYLKDTKAIKHT
ALIFGTEGNGLPAHVLQKSETLRIPMAYGFDSINVATASGLALAHFADFDKLN"
misc_feature complement(324008..324778)
/locus_tag="BARCL_0299"
/note="rRNA methylases [Translation, ribosomal structure
and biogenesis]; Region: SpoU; COG0566"
/db_xref="CDD:30912"
misc_feature complement(324017..324424)
/locus_tag="BARCL_0299"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene complement(324990..325214)
/locus_tag="BARCL_0300"
/db_xref="GeneID:10137403"
CDS complement(324990..325214)
/locus_tag="BARCL_0300"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158569.1"
/db_xref="GI:319898476"
/db_xref="GeneID:10137403"
/translation="MNRCKASKSYDMVFSLYFQSVTITIENLTKNNRKNHLAIEENKF
CKTSLYIKIQKRIWALGTQILFPLNKGLQA"
gene 325536..326444
/locus_tag="BARCL_0301"
/db_xref="GeneID:10137404"
CDS 325536..326444
/locus_tag="BARCL_0301"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158570.1"
/db_xref="GI:319898477"
/db_xref="GeneID:10137404"
/translation="MDTKIQIQRLTILSILVACIVFSLKCWAYYITSSVALYSDTLES
IVNILAALAAWWAVKISMKPADQDHPFGHYKAEYFSALLEGVLIIIAAIMILREAWLA
FITVELPKKPGIWLAPYFVACIINFFWGWLLIRQGKIHRSPALKADGVHLMTDVLTSF
GILIGLVSAFITESAILDPILAVIVAINILLQGGKVIYNAIQGLMDVGVELNETFWIR
DLISGSAHGAIEVHDLKTRVAGRVTFIEFHLVVPTVMQVGEAHQICNNIESVLEAEFE
NARVIIHIEPENEAKLPLGTAVVPFV"
misc_feature 325554..326408
/locus_tag="BARCL_0301"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:30402"
misc_feature 325593..326402
/locus_tag="BARCL_0301"
/note="Cation efflux family; Region: Cation_efflux;
pfam01545"
/db_xref="CDD:201849"
gene complement(327102..327998)
/locus_tag="BARCL_0302"
/db_xref="GeneID:10137405"
CDS complement(327102..327998)
/locus_tag="BARCL_0302"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158571.1"
/db_xref="GI:319898478"
/db_xref="GeneID:10137405"
/translation="MLASMFYLAHISDVHLSPLPQPSLLELCGKRLTGYLNWTKKRNN
QMKTDALETLMHALKQKKPDHIVISGDLINLALDKEFTQARSWLLAQNNPQNISLTFG
NHDAYVRGAFQKACTCFQPWIKSDFPQKNPFPYMRIRNNIAIIGASSAIATPPFQAAG
YFDKKQAKILSQFLSEAATRNLFRIVTIHHPPFHHATSWHKKLWGVERFLKIIKHHGC
ELILHGHTHLPTLNIIEGKMGKTPIVGVASASQSFGSKKPPANFNLFTIEYLHHQWHC
QLERYGIINHNNEIACIEKIDF"
misc_feature complement(<327681..327977)
/locus_tag="BARCL_0302"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature complement(order(327687..327692,327786..327788,
327954..327956,327960..327962))
/locus_tag="BARCL_0302"
/note="active site"
/db_xref="CDD:163614"
misc_feature complement(order(327690..327692,327786..327788,
327954..327956,327960..327962))
/locus_tag="BARCL_0302"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
misc_feature complement(327312..327857)
/locus_tag="BARCL_0302"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature complement(327264..>327446)
/locus_tag="BARCL_0302"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
gene complement(328862..330958)
/locus_tag="BARCL_0303"
/db_xref="GeneID:10137406"
CDS complement(328862..330958)
/locus_tag="BARCL_0303"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158572.1"
/db_xref="GI:319898479"
/db_xref="GeneID:10137406"
/translation="MIQSLIFQPFLSISWLLFLGGLPAFFIIIGFITQRRGAFLRLVA
LISLILALLNPMITKEQREPVKSTVGIVIDHSESQTFGTREEDSNKARTQLTNALARY
PQFEPRFIEAGKLSDDRYAPSTNLFHALTQAISDIPPSRYAGTILITDGQVHDIPQLS
EFNHDAPINALITGKTDEFDRQIKFIAPPRFALVNKPLMLSILVEDKGQPKEPIPAKA
NIIVSINGQKVGYYSVTPGVIFQTEIILPHAEKNIIQVTTDTHEGELSLDNNRAITVI
EGIRENLRVLLISGAPYNGERTWRDLLKSDSNIDLVHFTILRPPEKADNTPLNQLSLV
VFPTTKLFVEDINNFDLVILDGYQHSTALPLIYYDYIAQYVQKGGALLIVTGPEFTTE
FSLAKTPLIRVLPALPNGAIIQKPFRPTLTKEGKRHPVTRGLATPTHPAHQWGRWLRQ
IAIQNIGKNIAIMKGANEQPLLLLSHVDKGRLGMLLSDESWLWARGFEGGGPYAALYR
RIAHWLMKEPELEEEKLSALSHHYYLTIRRQTLQDHPEPAEIIFPSGKKKNITLTKEQ
EGVFTGSIQTDETGIFTINNGDQTVFSTVGAINSPELSDLISTEEKLAPISKHTGGHV
VRLWNKEKNGIHLPPIKLIQSQTEKISSFSHSIVLKEATETRLVNISHFPIFSGFLAL
LICLLLLSSVWYCENH"
misc_feature complement(329600..330109)
/locus_tag="BARCL_0303"
/note="Protein of unknown function (DUF1355); Region:
DUF1355; pfam07090"
/db_xref="CDD:203578"
gene complement(330955..333753)
/locus_tag="BARCL_0304"
/db_xref="GeneID:10137407"
CDS complement(330955..333753)
/locus_tag="BARCL_0304"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158573.1"
/db_xref="GI:319898480"
/db_xref="GeneID:10137407"
/translation="MSFDAPLLLLGLLALPIIWWLLRTTPSSPNKELFPPLHLLLKKT
NQQKTVNHTPWWLLLLRLTIATLIIIALARPTWIQKPIVFSGSHPLALIIDNGWASAE
EWKKRIAVAKSLLAQAEKHQKNIYLLATAENNTQDIGPFSVEVIKQHLLHLRPRPWPV
NRVQAFQKLTEQTGEKPLDIAYLSDGLQTNEDEQAFALIKQLKPKKFLWYADDISTLA
GITNIENNNGNMSARVIRATTYGEPPITLNLYDFKNQFLARFTTNFHEGETTALVPFN
LPLELRNHIAWIKIDNQAQAAATFLVDSRSRINRVALLSPNINEMVQPLLSPMYYIIK
ALQDHTQLITMGGGELSIDIDRLLKQNPSVFIIGDIINIAKETEKKLSDFVNQGGILI
RFAGENLSTAKHYDSLLPVSLRSGERLLGSVMSWAKPQKLAPFTKNSFFFDLSFPENV
TVSRQILAEPSSDLFEKTWLSLADGTPLITAANHGKGMLIFIHVAPDPTWSNLPLSGF
FAQMLHKLITLNTHVKETPTQIKTIHNPWQTLSADGQLQTAPSHVIPLITDTQNPPLP
SYHTPPGLYGVKNNLYAFNLLNHTSRLTKQSLLPTFLNKKPLSYNIQEKHFTGILLGI
TSLLLALDSFLALWIGRSFPFNRRRNMALFLPFIVVFIALLPYSPIVQAQIIDDHDET
IVQAAGSTHLAYVITNNHEIDTTSKSGLEALSQFIAERTMLSPGPVVALDLDKDELTF
YPLIYWPIDANSPMPTQKSLQKIKVFMKHGGTVLFDTRDQINTNFNLEETATPATQRL
RTILSELNIPTIEPASTEHVIARSFYIMPDFPGLYRGSPLWVESSSINKKNKNSITTG
DNVSSLLITANNFTAAWALNEKGMWKYPLIPNDPMQRLWAFRAGLNIVIYTLTGNYKA
DQIHVPALLERFNRERRQ"
misc_feature complement(<332464..332823)
/locus_tag="BARCL_0304"
/note="A4 beta-galactosidase middle domain: a type 1
glutamine amidotransferase (GATase1)-like domain; Region:
A4_beta-galactosidase_middle_domain; cd03143"
/db_xref="CDD:153237"
misc_feature complement(331030..331686)
/locus_tag="BARCL_0304"
/note="Domain of unknown function (DUF4159); Region:
DUF4159; pfam13709"
/db_xref="CDD:205884"
gene complement(333750..334661)
/locus_tag="BARCL_0305"
/db_xref="GeneID:10137408"
CDS complement(333750..334661)
/locus_tag="BARCL_0305"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158574.1"
/db_xref="GI:319898481"
/db_xref="GeneID:10137408"
/translation="MAIGKKIFKETRQSLAATLQKDAANMPYFLLQASRLANTLITGR
HGQHKRGNGENFWQFRPYVQGESITHIDWRRSARDEHTYLREREWEMTQTVWIWPDQS
ASMQYCSCFSKISKGNHAIILSLALAKLLAKSGEHIAIPGLMAPTISSNVMERMALAL
TNHQVENSFPNFSIVTRFSQVIIMSDFLDHPEKIIDHLTVLATKQVNAHLIEVTDPAE
EHFPYTGHIEFFDPETKEKLLVRKAENLRKNYHKLYQERRQKLTEFCSHQGWTYQVSL
TNRPLTEIIVHLANKMKASKSYLRRSL"
misc_feature complement(333783..>334583)
/locus_tag="BARCL_0305"
/note="Uncharacterized conserved protein (some members
contain a von Willebrand factor type A (vWA) domain)
[General function prediction only]; Region: COG1721"
/db_xref="CDD:31907"
misc_feature complement(<334320..334505)
/locus_tag="BARCL_0305"
/note="Protein of unknown function DUF58; Region: DUF58;
pfam01882"
/db_xref="CDD:202025"
gene complement(334661..335692)
/locus_tag="BARCL_0306"
/db_xref="GeneID:10137409"
CDS complement(334661..335692)
/locus_tag="BARCL_0306"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158575.1"
/db_xref="GI:319898482"
/db_xref="GeneID:10137409"
/translation="MSQYDTLSHSNEKASINDDASLIVKDIDEAHKELDILQKAIDKV
IFGQSHVIEYTLTAILAGGHALLIGVPGLAKTRLVETLGIVLGLDAKRIQFTPDLMPS
DIIGSEIMDSDKNGRRSFRYIQGPIFTQLLMADEINRASPRTQSALLQAMQEYHVTIA
GTRYDLPQPFHVLATQNPVEQEGTYCLPEAQLDRFLMQIDIDYPDLTTERRIILETTS
KKSQIAKPVLSIKKLQKIQKIVRQMPISESVVEAILKLVRSARPHKDNSLANTYISWG
PGPRASQALSLCVRARALYYGRLAPSLDDLQALAQPVLQHRMALNFSAHAENITIKDI
IANLMKDSL"
misc_feature complement(334673..335584)
/locus_tag="BARCL_0306"
/note="MoxR-like ATPases [General function prediction
only]; Region: COG0714"
/db_xref="CDD:31058"
misc_feature complement(335084..335557)
/locus_tag="BARCL_0306"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(335465..335488)
/locus_tag="BARCL_0306"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(335165..335167,335288..335290,
335462..335485))
/locus_tag="BARCL_0306"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(order(335285..335299,335312..335314))
/locus_tag="BARCL_0306"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(335111..335113)
/locus_tag="BARCL_0306"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 335941..337194
/gene="pcnB"
/locus_tag="BARCL_0307"
/db_xref="GeneID:10137410"
CDS 335941..337194
/gene="pcnB"
/locus_tag="BARCL_0307"
/EC_number="2.7.7.19"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="poly(A) polymerase"
/protein_id="YP_004158576.1"
/db_xref="GI:319898483"
/db_xref="GeneID:10137410"
/translation="MSITQNFKQVRWLQCSNIQTLLRVLSQDGEEARVVGGAVRNQLL
QQPISDIDIATTCLPQQVIKRVEEVGFKAIPTGINFGTVTVVGESCSYEVTTLRSDIE
TDGRHAKVIFSRDWKKDAERRDFTINALYCNAAGKIYDEVGGMNDIATRTIRFIGVSE
QRICEDYLRILRFFRFFAWYGKGRPDAEGLKACVRLKHGLQKLSPERIWEEMKKLLAA
SDPTRALLWMRQSGILTLILPETERWGIDAIHSLIKTEQAFGWKVDPFLRLESLIPPH
IVRFHDMAGRLRLSNKEKIRLKQWSELELINHNCSDTFVQKLIYFYGRPPVLDQLALS
LAAARDQALKDSKAAQKEECYIRLYQLAQKWQIPTFPISGKDLLERGLVKGMFLGKKL
KELETMWIESGFLIDRNKLLEKIEQ"
misc_feature 335971..337191
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="tRNA nucleotidyltransferase/poly(A) polymerase
[Translation, ribosomal structure and biogenesis]; Region:
PcnB; COG0617"
/db_xref="CDD:30962"
misc_feature 335989..336384
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(336046..336051,336058..336063,336088..336090,
336094..336096,336178..336180,336217..336219,
336232..336234,336304..336315,336322..336324)
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(336046..336051,336058..336060,336088..336090,
336094..336096,336304..336312,336322..336324)
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(336088..336090,336094..336096,336217..336219)
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 336496..336669
/gene="pcnB"
/locus_tag="BARCL_0307"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
gene 337219..337404
/locus_tag="BARCL_0308"
/db_xref="GeneID:10138378"
CDS 337219..337404
/locus_tag="BARCL_0308"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158577.1"
/db_xref="GI:319898484"
/db_xref="GeneID:10138378"
/translation="MSFSFKYYLNLFIDFLCYFVCDYAILSLCNYLLYKKYVPANIIS
LVHRKYCALFINQSKSD"
gene complement(338005..338481)
/locus_tag="BARCL_0309"
/db_xref="GeneID:10137411"
CDS complement(338005..338481)
/locus_tag="BARCL_0309"
/EC_number="2.1.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="RNA methyltransferase"
/protein_id="YP_004158578.1"
/db_xref="GI:319898485"
/db_xref="GeneID:10137411"
/translation="MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFDLSDRN
LKRAGMDYLERASLERHLDWQNFIDTMQRFNHRLLLLSTKAKTCYTEIRYQKNDVLLF
GRESAGVPDYVYKAADYALTIPMLPHARSLNLAMSVAITTGEALRQIGYNEVRQTL"
misc_feature complement(338026..338481)
/locus_tag="BARCL_0309"
/note="Predicted rRNA methylase (SpoU class) [Translation,
ribosomal structure and biogenesis]; Region: CspR;
COG0219"
/db_xref="CDD:30568"
gene 338588..338674
/locus_tag="BARCL_0310"
/db_xref="GeneID:10137412"
CDS 338588..338674
/locus_tag="BARCL_0310"
/EC_number="1.10.2.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase cytochrome b
subunit"
/protein_id="YP_004158579.1"
/db_xref="GI:319898486"
/db_xref="GeneID:10137412"
/translation="MLLSHLLTGIVLAMHYVSDVHLAFETGE"
misc_feature 338591..>338665
/locus_tag="BARCL_0310"
/note="cytochrome b; Provisional; Region: CYTB; MTH00191"
/db_xref="CDD:177239"
gene 339619..339789
/locus_tag="BARCL_0311"
/db_xref="GeneID:10137413"
CDS 339619..339789
/locus_tag="BARCL_0311"
/EC_number="1.10.2.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase cytochrome c1
subunit"
/protein_id="YP_004158580.1"
/db_xref="GI:319898487"
/db_xref="GeneID:10137413"
/translation="MTFTRSVSLPFPALITDVTNYNTAGPDYIRALLTGYQEAPKIKK
IAKGYCIIFILL"
misc_feature <339685..>339765
/locus_tag="BARCL_0311"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene 340145..340591
/locus_tag="BARCL_0312"
/db_xref="GeneID:10137414"
CDS 340145..340591
/locus_tag="BARCL_0312"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158581.1"
/db_xref="GI:319898488"
/db_xref="GeneID:10137414"
/translation="MKKIVCTAFVSIFMVSGAYAQSFTTTKPFETEVISSTGIVKIGS
DMVARYITPSAADFVASSLIGTDVYNMEDENIGEVKDIILRENSVEGIVIGIGGFLGI
GERYVVVSPDTIQKTNDYGKWKFIINATKDSLKGAPEFKYEGRWTR"
misc_feature 340322..340546
/locus_tag="BARCL_0312"
/note="PRC-barrel domain; Region: PRC; pfam05239"
/db_xref="CDD:203221"
gene complement(340730..341833)
/gene="engD"
/locus_tag="BARCL_0313"
/db_xref="GeneID:10137415"
CDS complement(340730..341833)
/gene="engD"
/locus_tag="BARCL_0313"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_004158582.1"
/db_xref="GI:319898489"
/db_xref="GeneID:10137415"
/translation="MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGE
VAVPDLRMKKIASIAGSKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAII
HVLRCFQDENITHVEGRIDPISDATTVETELMLSDLESLERRITQIRKRATAKDKEAL
AILPIMEAGLKLLQKGYPVRLMLKDISADEQYILNSLNLLTSKPVLYVCNVSENEAAH
GNDFTQAVEKMATAQNAHTIVIAASIEAEIAQLTEEEALEYLNALGLSEPGLNRLIRA
GYDLLDLITYFTCGPKETRAWTIVRGVKAPQAAGVIHSDFERGFIRAQTISYEDYIAL
GGENAAKEAGKVRDEGKEYIVQDGDIILFKHNT"
misc_feature complement(340736..341833)
/gene="engD"
/locus_tag="BARCL_0313"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:181981"
misc_feature complement(340991..341821)
/gene="engD"
/locus_tag="BARCL_0313"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature complement(341786..341809)
/gene="engD"
/locus_tag="BARCL_0313"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature complement(order(341105..341113,341195..341197,
341201..341206,341783..341794,341798..341800))
/gene="engD"
/locus_tag="BARCL_0313"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature complement(341714..341737)
/gene="engD"
/locus_tag="BARCL_0313"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature complement(341723..341725)
/gene="engD"
/locus_tag="BARCL_0313"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature complement(order(341543..341572,341591..341620))
/gene="engD"
/locus_tag="BARCL_0313"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature complement(341606..341617)
/gene="engD"
/locus_tag="BARCL_0313"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature complement(341195..341206)
/gene="engD"
/locus_tag="BARCL_0313"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature complement(341105..341113)
/gene="engD"
/locus_tag="BARCL_0313"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature complement(340739..340987)
/gene="engD"
/locus_tag="BARCL_0313"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene 342108..342797
/locus_tag="BARCL_0314"
/db_xref="GeneID:10138094"
CDS 342108..342797
/locus_tag="BARCL_0314"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158583.1"
/db_xref="GI:319898490"
/db_xref="GeneID:10138094"
/translation="MGLLSRRTFLIAAPLALAGCLTRQSNVSIFSQKVQYVPPEIQAL
YGPVTNEPYFLPAVNLSTIDPKFWRKQVNYHTNYPPGTLIVDTQACLLYLVGENGKAL
RYGIGVGKEGLAFTGVGIIQYKRRWPSWAPTKKMMEREPERYGHLAQGMPPGPENPLG
ARAFYLFKDGKDTLFRIHGSHEAWSIGRAISSGCIRLLNQDIIDLYNRVPDGSRVVVL
QNDGNTPRGFI"
misc_feature 342114..342764
/locus_tag="BARCL_0314"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: ErfK; COG1376"
/db_xref="CDD:31566"
misc_feature <342615..342758
/locus_tag="BARCL_0314"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:202749"
gene complement(342922..343500)
/gene="pth"
/locus_tag="BARCL_0315"
/db_xref="GeneID:10137416"
CDS complement(342922..343500)
/gene="pth"
/locus_tag="BARCL_0315"
/EC_number="3.1.1.29"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Peptidyl-tRNA hydrolase"
/protein_id="YP_004158584.1"
/db_xref="GI:319898491"
/db_xref="GeneID:10137416"
/translation="MLLIAGLGNPGSQYQNNRHNIGFMAVNTIHQILSFSPWSKKFQA
EISNGLINSEKIILIKPQTFMNLSGQSIGEALRFYKLDLNNLIVIYDELDLPPGKIRI
KIGGGSNGHNGIKSIDSHCGTNYHRIRLGIGHPGAKELVNQYVLGNFTKSDQEWLSPL
LDAIAHNIALLIKRNNNCFMNKITLAMESKNL"
misc_feature complement(342985..343494)
/gene="pth"
/locus_tag="BARCL_0315"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature complement(order(343168..343170,343228..343230,
343306..343311,343444..343446,343474..343476))
/gene="pth"
/locus_tag="BARCL_0315"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature complement(343444..343446)
/gene="pth"
/locus_tag="BARCL_0315"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene complement(343575..344201)
/gene="rplY"
/locus_tag="BARCL_0316"
/db_xref="GeneID:10138438"
CDS complement(343575..344201)
/gene="rplY"
/locus_tag="BARCL_0316"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25"
/protein_id="YP_004158585.1"
/db_xref="GI:319898492"
/db_xref="GeneID:10138438"
/translation="MSKSYTFKAEIRERVGKGSSRKLRRNGLIPAVIYGNKQPPLAIS
VPYKEIFYKIHAGGFRTTVATIEIDKQKIQVLPKDYQLDPIRDFPIHVDFLRISATSV
VHVHIPVHFLNEDMAPGIKRGGVLNIVRHEIECTALAHAIPEAIEIDLSSYSIGDSIH
ISAVQLPKGVTPVIQERDFTIATIAAPASISASDDSSEKESSENNAKT"
misc_feature complement(343914..344186)
/gene="rplY"
/locus_tag="BARCL_0316"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature complement(343683..344180)
/gene="rplY"
/locus_tag="BARCL_0316"
/note="ribosomal protein L25, Ctc-form; Region: ctc_TL5;
TIGR00731"
/db_xref="CDD:162013"
misc_feature complement(order(343917..343919,343923..343925,
343929..343931,343959..343961,343965..343970,
344082..344084,344094..344102,344130..344132,
344136..344144,344166..344168))
/gene="rplY"
/locus_tag="BARCL_0316"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature complement(order(343914..343919,343968..343970,
343980..343982,344016..344018,344094..344096))
/gene="rplY"
/locus_tag="BARCL_0316"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature complement(order(343917..343919,343941..343943,
343962..343964,343971..343976))
/gene="rplY"
/locus_tag="BARCL_0316"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 344688..344822
/locus_tag="BARCL_0317"
/db_xref="GeneID:10138513"
CDS 344688..344822
/locus_tag="BARCL_0317"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158586.1"
/db_xref="GI:319898493"
/db_xref="GeneID:10138513"
/translation="MILADKFGHIVVEAQWNEKNGYKLLIVFADIEFRLFSILKAFRY
"
gene 344957..345040
/locus_tag="BARCL_0318"
/pseudo
/db_xref="GeneID:10137417"
misc_feature 344957..345040
/locus_tag="BARCL_0318"
/inference="ab initio prediction:AMIGene:2.0"
/note="hypothetical protein"
/pseudo
/db_xref="PSEUDO:CBI75999.1"
gene 345054..345206
/locus_tag="BARCL_0319"
/pseudo
/db_xref="GeneID:10137418"
misc_feature 345054..345206
/locus_tag="BARCL_0319"
/inference="ab initio prediction:AMIGene:2.0"
/note="hypothetical protein"
/pseudo
/db_xref="PSEUDO:CBI76000.1"
gene 345459..345584
/locus_tag="BARCL_0320"
/db_xref="GeneID:10137419"
CDS 345459..345584
/locus_tag="BARCL_0320"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158587.1"
/db_xref="GI:319898494"
/db_xref="GeneID:10137419"
/translation="MAIDCEVQVERIIREIMDDPEVVYRSTALFYQDFFDTLSYS"
gene 345628..345675
/locus_tag="BARCL_0321"
/db_xref="GeneID:10137420"
CDS 345628..345675
/locus_tag="BARCL_0321"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158588.1"
/db_xref="GI:319898495"
/db_xref="GeneID:10137420"
/translation="MTIVQASIDEEGACK"
gene complement(345960..346892)
/gene="prsA"
/locus_tag="BARCL_0322"
/db_xref="GeneID:10137421"
CDS complement(345960..346892)
/gene="prsA"
/locus_tag="BARCL_0322"
/EC_number="2.7.6.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase"
/protein_id="YP_004158589.1"
/db_xref="GI:319898496"
/db_xref="GeneID:10137421"
/translation="MKLFCGNSNPRLAEDVANYLSIPLGKATVKRFADQEIFVELHEN
VRGQDVFVLQSSSYPANDHLMELLIMIDALRRSSARRITAVLPYFGYARQDRKPGPRT
PISAKLVANLITQAGAHRVLTLDLHAGQIQGFFDIPTDNLYAVPVIARDIKMHYSLEN
VIVVSPDVGGVVRARSLAKRLNSLLAIVDKRRERPGESEVMNIIGDVTGKDCLLLDDI
VDSGGTLCNAASALLQHGAKSVTSYITHGVLSGNAIERITNSEMKELVITDSIMPTKA
IEQAHNMRILPIADLIGEAIARTAAEQSVSSLFG"
misc_feature complement(345966..346892)
/gene="prsA"
/locus_tag="BARCL_0322"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature complement(346542..346892)
/gene="prsA"
/locus_tag="BARCL_0322"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature complement(346083..346463)
/gene="prsA"
/locus_tag="BARCL_0322"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(346149..346151,346221..346235,
346239..346247,346386..346388,346392..346394))
/gene="prsA"
/locus_tag="BARCL_0322"
/note="active site"
/db_xref="CDD:206754"
gene 347609..348130
/locus_tag="BARCL_0323"
/db_xref="GeneID:10138432"
CDS 347609..348130
/locus_tag="BARCL_0323"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158590.1"
/db_xref="GI:319898497"
/db_xref="GeneID:10138432"
/translation="MLKKYELTDEKIIIGAHTLYRIRALKDFGDVKVGDLGGFIEDEK
NLSHESNCWVYNNAKVFDDARVYGNAMVTENAEVYGKARVFRNAKVFDNAKVFGNAKI
FGDALVYENAMVAENAKIYERARVFSNVKVCGETTVADNMAIWGSANVYNRTKICNKR
QFYKKKTDNNIKI"
misc_feature 347753..347962
/locus_tag="BARCL_0323"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; Region: LbetaH;
cl00160"
/db_xref="CDD:193687"
misc_feature order(347765..347767,347771..347773,347783..347785,
347789..347791,347819..347821,347837..347839,
347843..347845,347891..347893,347906..347911,
347915..347917,347945..347947,347957..347959)
/locus_tag="BARCL_0323"
/note="putative trimer interface [polypeptide binding];
other site"
/db_xref="CDD:100038"
misc_feature order(347891..347893,347897..347902,347915..347917,
347951..347953)
/locus_tag="BARCL_0323"
/note="putative CoA binding site [chemical binding]; other
site"
/db_xref="CDD:100038"
gene complement(348424..349200)
/locus_tag="BARCL_0324"
/db_xref="GeneID:10137422"
CDS complement(348424..349200)
/locus_tag="BARCL_0324"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158591.1"
/db_xref="GI:319898498"
/db_xref="GeneID:10137422"
/translation="MEPILAQDFCNLHSREIKYGFFTRQGGVSKSFYQSLNVGQSSND
YPEHIMQNRTLIAHYFDIEVQNLITVHQIHSCEVVVVDKAFIGERPKADALVTTKKGL
AIGVLTADCGPVLFADPQAGVIGAAHAGWRGSLNGVLEKTISVMEEQGAKRQSIIAVL
GPCIGPCHYEVTSEFYNQFIERDNQFEKYFLKTDKADHFSFNLWTFIINQLKKEGVHA
SCLKLCTYQNEKRFFSYRRTIHRNEPDYGRQISVIMLGNK"
misc_feature complement(348436..349161)
/locus_tag="BARCL_0324"
/note="Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism];
Region: yfiH; COG1496"
/db_xref="CDD:31685"
misc_feature complement(348436..349140)
/locus_tag="BARCL_0324"
/note="Multi-copper polyphenol oxidoreductase laccase;
Region: Cu-oxidase_4; pfam02578"
/db_xref="CDD:202292"
gene complement(349260..350345)
/locus_tag="BARCL_0325"
/db_xref="GeneID:10137423"
CDS complement(349260..350345)
/locus_tag="BARCL_0325"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158592.1"
/db_xref="GI:319898499"
/db_xref="GeneID:10137423"
/translation="MSNLKERIKEIIILDGPISVSQYMALALTDPQSGYYQKQKPFGH
TGDFITAPEISQLFGEMIGIWTIMSWQAQGCPNPFILAEIGPGRGTLMDDVLRTIRKI
CMAAYNAADIFLIEISQRLATEQKKRLSSHKKQIHNIENFEQIPCKPLILIANELFDA
LPIDQYIKVNEEWRERRITLNQEGNFTFIVDAHKFPSTDLPAHCAQMPNGTILEYAPS
RNQLIQKISSHLIHTKGSALLIDYGTSDFAFGDTLQAISKHKFCDIFSAPGKHDLTSH
VNFFSLKTIAIQQGCFAEILEQGDFLFKMGLLERAKQLSINKSIVIKEKIYQDIERLA
GPKQMGKLFKVLHVSDKNIQIPHFDHK"
misc_feature complement(349272..350336)
/locus_tag="BARCL_0325"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(349473..350165)
/locus_tag="BARCL_0325"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene complement(350345..351202)
/gene="lgt"
/locus_tag="BARCL_0326"
/db_xref="GeneID:10137424"
CDS complement(350345..351202)
/gene="lgt"
/locus_tag="BARCL_0326"
/EC_number="2.4.99.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_004158593.1"
/db_xref="GI:319898500"
/db_xref="GeneID:10137424"
/translation="MNDFPFCPAIAFPLFLDPVIIHLGPIAFHWYGLGYVVGILFAWW
YAQELLKKKSLWSKNQAPMTPQQISDFVTLGTIGIVVGGRLGQVLVWDPVYYFNHPSD
IIALWDGGMSFHGGLIGIITAMLWFSYKNNINVWGMFDTIAAGAPIGIGIVRICNFIN
QELWGHVTTVPWAVCFYNDPQYLPRHPSQLYEALMEGFLLFIILAIVIFSFKALKRPG
TITGIFNISYGIARSISEIFRVPQEDPEWFAVLFYSTGFTYGMALSLPMILFGCYALL
QTFKYKFTK"
misc_feature complement(350357..351175)
/gene="lgt"
/locus_tag="BARCL_0326"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:178826"
gene 351419..351691
/locus_tag="BARCL_0327"
/db_xref="GeneID:10138265"
CDS 351419..351691
/locus_tag="BARCL_0327"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158594.1"
/db_xref="GI:319898501"
/db_xref="GeneID:10138265"
/translation="MYNGSNRILDELAKLATDAVGIAQGVGREAETAFRLQAERMLNK
LDLVSREEFEAVKEMVLKLYAENADLKKRLDGLEKQNSKKVKTDSV"
misc_feature 351425..351658
/locus_tag="BARCL_0327"
/note="Membrane fusogenic activity; Region: BMFP;
pfam04380"
/db_xref="CDD:190961"
gene 352074..352574
/locus_tag="BARCL_0328"
/db_xref="GeneID:10137425"
CDS 352074..352574
/locus_tag="BARCL_0328"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158595.1"
/db_xref="GI:319898502"
/db_xref="GeneID:10137425"
/translation="MRLAIGATEREEHPVDFIEQIACKYDWSFERNAQDEINVSIEGK
RAYYRLSFSWMEEQEALHLACAFDLFIENTRTAEIQRLLLAINEKLLLGHFDYWQGDN
SVIYRQGLLLAGGVHPSHIQVETLLIYALKICESHYAAFQMVAWAGESAHKALQYALF
ETVGNA"
misc_feature 352095..352571
/locus_tag="BARCL_0328"
/note="Putative bacterial sensory transduction regulator;
Region: YbjN; cl15834"
/db_xref="CDD:210234"
gene complement(352614..353954)
/gene="envZ"
/locus_tag="BARCL_0329"
/db_xref="GeneID:10137426"
CDS complement(352614..353954)
/gene="envZ"
/locus_tag="BARCL_0329"
/EC_number="2.7.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_004158596.1"
/db_xref="GI:319898503"
/db_xref="GeneID:10137426"
/translation="MIQPAKKIARWLSKKMPKRLYARSLIIIIAPMVLLQTVIGYVFM
ERHWQMVTERLSTTVVHDIAAIIDIIETYPQQHNYEDIKRIAQQRMGLNISILPPDSL
PPPGPKPFFAILDYFLSEEITRQINRPFWIDTVGDSNLVEIRIRLDHNILRVFAMRSQ
AYASNTSIFLSWMVGTALVLLLIAIYFLRHQIKPIQQLAKAAESFGRGHPLPEGFQPQ
GADEIRRAGIAFLRMRERIERQIEQRTMMLSGVSHDLRTILTRFKLQLALVSNDFDIN
PLEQDVSDMQNMLEGYLAFARGEGSENISTIDLNVLMQKFSTNAHLHQRNFSYTIEGS
AQIQVRPHAFTRLIGNLLSNAFYYANTIQLTATSQKESFIITIDDDGPGIQKDMHTEV
FKPFFRLDKSRNQDASGTGLGLSIAQDIARSHGGNIQLDDSPLGGLRAIVDIPL"
misc_feature complement(352617..353504)
/gene="envZ"
/locus_tag="BARCL_0329"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(353256..353450)
/gene="envZ"
/locus_tag="BARCL_0329"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature complement(352623..352919)
/gene="envZ"
/locus_tag="BARCL_0329"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(352635..352637,352641..352646,
352659..352661,352665..352667,352713..352724,
352803..352808,352812..352814,352818..352820,
352824..352826,352884..352886,352893..352895,
352905..352907))
/gene="envZ"
/locus_tag="BARCL_0329"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(352893..352895)
/gene="envZ"
/locus_tag="BARCL_0329"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(352716..352718,352722..352724,
352806..352808,352812..352814))
/gene="envZ"
/locus_tag="BARCL_0329"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(353962..354663)
/gene="ompR"
/locus_tag="BARCL_0330"
/db_xref="GeneID:10138096"
CDS complement(353962..354663)
/gene="ompR"
/locus_tag="BARCL_0330"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcriptional regulator OmpR"
/protein_id="YP_004158597.1"
/db_xref="GI:319898504"
/db_xref="GeneID:10138096"
/translation="MTDHIQTLCDNAPHLLVIDDDTRIRNLLSQFLIKNGFRVSVSAN
ADEAKRQLKSLDFDLLIVDVMMPGENGIDLTHSLRQTKNVSILMLTALSEIDNRIHGL
EAGADDYLAKPFDPRELLLRINAILRRGLSSTQPKIEQIVFGPYIFSISRRELKKEGE
LIKLTDKEQEMMVIFSEHAGDTIPRHKFAMGDNNSERSIDVQINRLRRKIENNPTTPI
WIQTVRGIGYKLSIE"
misc_feature complement(353980..354624)
/gene="ompR"
/locus_tag="BARCL_0330"
/note="osmolarity response regulator; Provisional; Region:
ompR; PRK09468"
/db_xref="CDD:181883"
misc_feature complement(354283..354618)
/gene="ompR"
/locus_tag="BARCL_0330"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(354325..354330,354337..354339,
354394..354396,354451..354453,354475..354477,
354604..354609))
/gene="ompR"
/locus_tag="BARCL_0330"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(354475..354477)
/gene="ompR"
/locus_tag="BARCL_0330"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(354451..354459,354463..354468))
/gene="ompR"
/locus_tag="BARCL_0330"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(354322..354330)
/gene="ompR"
/locus_tag="BARCL_0330"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(353974..354243)
/gene="ompR"
/locus_tag="BARCL_0330"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(353983..353985,353998..354000,
354034..354039,354061..354063,354070..354072,
354109..354114,354169..354171))
/gene="ompR"
/locus_tag="BARCL_0330"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 354822..355466
/locus_tag="BARCL_0331"
/db_xref="GeneID:10138367"
CDS 354822..355466
/locus_tag="BARCL_0331"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="YP_004158598.1"
/db_xref="GI:319898505"
/db_xref="GeneID:10138367"
/translation="MNDLSAYIIPVTPFQQNCTLLFDNENKRGVLVDPGGDWPKIQQT
IQDKGVIVESIWITHGHIDHVGAAMQAKEALDIQIIGSHRNDTSVMDDVSERAKIYHM
PDARVCIPDQWLEDGDSVDCAGHVFTVFHTPGHSPGHVIYFNEKKRFALLGDVLFRGS
IGRTDFPLCSYEELMKSIKEKVLPLGDDVNFICGHGPGSQIGYERQHNFFLQEI"
misc_feature 354822..355463
/locus_tag="BARCL_0331"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature 354870..355406
/locus_tag="BARCL_0331"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 355758..355982
/locus_tag="BARCL_0332"
/db_xref="GeneID:10137427"
CDS 355758..355982
/locus_tag="BARCL_0332"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158599.1"
/db_xref="GI:319898506"
/db_xref="GeneID:10137427"
/translation="MYLLQGREHLQPEYHLYYFHYELHGVHEHGSADFYVQRDDDDTS
DVHDEHVYVARGDVYSILLMNESGHDEEKD"
gene 356021..356176
/locus_tag="BARCL_0333"
/db_xref="GeneID:10137428"
CDS 356021..356176
/locus_tag="BARCL_0333"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158600.1"
/db_xref="GI:319898507"
/db_xref="GeneID:10137428"
/translation="MRWANAVANGAEMVVADIADNTANLVNFVIAILLIQIYINSHFK
CFKLNVA"
gene complement(356372..356500)
/locus_tag="BARCL_0334"
/db_xref="GeneID:10137429"
CDS complement(356372..356500)
/locus_tag="BARCL_0334"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="cold shock protein y4cH"
/protein_id="YP_004158601.1"
/db_xref="GI:319898508"
/db_xref="GeneID:10137429"
/translation="MVQTGEVKFFNNNKDFDFIKPNNGNTDIFVHISDVQVSGLTE"
misc_feature complement(<356375..>356431)
/locus_tag="BARCL_0334"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
gene complement(356886..359318)
/gene="uvrB"
/locus_tag="BARCL_0335"
/db_xref="GeneID:10137430"
CDS complement(356886..359318)
/gene="uvrB"
/locus_tag="BARCL_0335"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_004158602.1"
/db_xref="GI:319898509"
/db_xref="GeneID:10137430"
/translation="MSHKKSKITQKQFNQKLIDQSEISEQCSNTKIHTVKKHDVSDVS
FETTNTIPPKNITTTNGVTATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGIP
FQIKTSFQPAGDQPNAIKSLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALI
LAPNKTLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQID
RMRHAATRAVLERDDVIIIASVSCIYGIGSVETYTAMTLQMQKGDKLNKQKLLTDLVA
QQYQRQNINFVRGSFRVRGDTIEIFPAHLENRAWRISLFDDEIETLTEFDPLTGQKTG
DLQSIKIYANSHYVTPRPTLNQAIKSIKMELVQRLDELNAAGRLLEAQRLEQRTIFDL
EMLETTGSCPGIENYSRYLTGRKPGEPPPTMFEYIPNHALVFIDESHVTIPQIGGMYR
GDFRRKATLVEYGFRLPSCMDNRPLSFEEWDAMRSQTIAVSATPGRWEIEQSRNIFVE
QIIRPTGLIDPPTEIRPAKTQVDDVVNEIRQTIKKGYRTLITVLTKHMAEDLTEYLHE
QNIRVRYMHSDINTLERIEILRDLRLGTFDVLVGINLLREGLDIPECGFVAIFDADKE
GFLRSETSLIQTIGRAARNVDSRVILYADIITGSIERALQETKRRRQKQIAYNEEHQI
TPTSIKKNIDDTLSSVYENDYNINISHFITQNNRVGDNLSNHIQHLEKLMRKAADDLN
FEEAARLRDEIKLLQEIELAITSNSSVCNNKYSIDEAIKHSSLFTKPNLDQMGPNTID
VGLLAKCKKERK"
misc_feature complement(357036..359015)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature complement(<358707..358928)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(358887..358901)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(357390..357752)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(357510..357518,357591..357596,
357654..357665))
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(357393..357395,357402..357404,
357414..357416,357492..357494))
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(357240..357371)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature complement(357048..357146)
/gene="uvrB"
/locus_tag="BARCL_0335"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene complement(359562..359927)
/locus_tag="BARCL_0336"
/db_xref="GeneID:10138653"
CDS complement(359562..359927)
/locus_tag="BARCL_0336"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158603.1"
/db_xref="GI:319898510"
/db_xref="GeneID:10138653"
/translation="MNNLINFFVAGTLILVVTTGHATDAIVIKNLNFRTGPSTQYAIL
SWIPINQSVSIQTCKGNWCQINYNSRTGWISSRYLSFKNGNDLYQTYTKSLITAHTFN
IDNNPREHYEDCSPEGYQH"
misc_feature complement(359688..359840)
/locus_tag="BARCL_0336"
/note="Bacterial SH3 domain; Region: SH3_3; pfam08239"
/db_xref="CDD:116824"
gene complement(360152..360298)
/locus_tag="BARCL_0337"
/db_xref="GeneID:10137431"
CDS complement(360152..360298)
/locus_tag="BARCL_0337"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158604.1"
/db_xref="GI:319898511"
/db_xref="GeneID:10137431"
/translation="MRLSKPAVVIGTFSMIRPFLVHERPYKDIKIGLQDEFWNPKITV
AFII"
gene 360255..360728
/gene="greA"
/locus_tag="BARCL_0338"
/db_xref="GeneID:10137432"
CDS 360255..360728
/gene="greA"
/locus_tag="BARCL_0338"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcription elongation factor GreA"
/protein_id="YP_004158605.1"
/db_xref="GI:319898512"
/db_xref="GeneID:10137432"
/translation="MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSE
NAEYHAAKEAQSHNEGRINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERK
VYQIVGDQEADVKTGKISISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI"
misc_feature 360255..360722
/gene="greA"
/locus_tag="BARCL_0338"
/note="transcription elongation factor GreA; Reviewed;
Region: greA; PRK00226"
/db_xref="CDD:178936"
misc_feature 360264..360476
/gene="greA"
/locus_tag="BARCL_0338"
/note="Transcription elongation factor, N-terminal;
Region: GreA_GreB_N; pfam03449"
/db_xref="CDD:190636"
misc_feature 360492..360722
/gene="greA"
/locus_tag="BARCL_0338"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene 360734..361792
/gene="lpcC"
/locus_tag="BARCL_0339"
/db_xref="GeneID:10138198"
CDS 360734..361792
/gene="lpcC"
/locus_tag="BARCL_0339"
/EC_number="2.-.-.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="lipopolysaccharide core biosynthesis
mannosyltransferase LpcC"
/protein_id="YP_004158606.1"
/db_xref="GI:319898513"
/db_xref="GeneID:10138198"
/translation="MRVSLKKTDIIVPHFKKRLSGVTTTVIHLVPLQRKQGIYISTLG
VGLPKNLPALSFKDLFGLWKSPIGKSFRIWHARRNIEMLCGVFLRDVLKMKLKLIFTS
ASQRHHKPFTKWLIRRMDKVIATSKRTGGYLEVPHQVIMHGVDLERFSPPKTVNDCFS
ASGLPGKYAVGCFGRLRYLKGTDLFVDAMLELLPNYPDWTAIIAGRTTVKYYHFEKQL
RQKIATAGLSDRIIFLGEIQDIPLWYRRLSLYVAPSRIEGFGLTPLEAMASQTAVVAS
NAGMYEELVTEGTGKVVSAGDRVALIEAIELYFSDLKKTIIAGKKALTHVRTHFPLEK
EAVAIGHVYKEMFAGETF"
misc_feature 360734..361783
/gene="lpcC"
/locus_tag="BARCL_0339"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature 360761..361765
/gene="lpcC"
/locus_tag="BARCL_0339"
/note="This family is most closely related to the GT1
family of glycosyltransferases and named after YqgM in
Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to...; Region:
GT1_YqgM_like; cd03801"
/db_xref="CDD:99974"
gene complement(362034..363428)
/gene="trkH"
/locus_tag="BARCL_0340"
/db_xref="GeneID:10138279"
CDS complement(362034..363428)
/gene="trkH"
/locus_tag="BARCL_0340"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="trk system potassium uptake protein TrkH"
/protein_id="YP_004158607.1"
/db_xref="GI:319898514"
/db_xref="GeneID:10138279"
/translation="MLLPALADLRDGNYNWTIFLYPCAITTVLATLILLATRGATCHF
SARLSFTLTLCLWLTGSIVGALPFYLSSLPISLAGAIFESISGITTTGSTVITGLDHL
SRSILLWRSIICWIGGIGFIGLALLLLPSLRVGGIQLFHMESSDKSEKILPRIHQIAN
GIITAYIGLTLACMLSYFAAGMTLFDAINHAMTTIATAGFSTHDVSFGYFSDKPAILI
VATIFMLLSALPFVLYIKLLLPGYSKRSIDPQVIVFLSIVFLFSFSLATWLRFHNHLP
FHKIFLDVIFHLTSVISTTGYSAEDYQLWGPFALGIFFIVSFTGGCAGSTSGGIKINR
LIILWRIAQTNMTQLLSPNAIVKVRYDRSNISSDITKAVLLFLCLYMFCLLIGTALLL
TTGLDFTSAYTGALTALSNIGPGLGSIIGPVGNFSTINDHALWILSALMLAGRLEIIT
IFVLFTRSFWNEQF"
misc_feature complement(362043..363293)
/gene="trkH"
/locus_tag="BARCL_0340"
/note="Cation transport protein; Region: TrkH; cl10514"
/db_xref="CDD:209160"
misc_feature complement(362094..363242)
/gene="trkH"
/locus_tag="BARCL_0340"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:162118"
gene 363711..364658
/gene="trxB"
/locus_tag="BARCL_0341"
/db_xref="GeneID:10138627"
CDS 363711..364658
/gene="trxB"
/locus_tag="BARCL_0341"
/EC_number="1.8.1.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Thioredoxin reductase"
/protein_id="YP_004158608.1"
/db_xref="GI:319898515"
/db_xref="GeneID:10138627"
/translation="MVQLYVRVLIIGSGPAGYTAAVYAARAMLKPVLITGMQQGGQLT
ITTDVENYPGFVGPIQGPWLMEQMAKQAENMGTKIIYDNIVKADLSKRPFILFGDSGT
QYCCDALIIATGAQARWLGLESEKTFMGGGVSACATCDGFFYRGKDVIVVGGGNTAVE
EALYLSHLAKSVSVVHRRDHFRAEKILQDRLFSCDNVRIIWDHTVEEIVGLPAHSPMG
AVVTGARLKNTKTGQEMQVDTDGIFIAIGHNPAVSLFEGQLKQKPGGYLWTAPDSTAT
SIAGVFAAGDVADDVFRQAVTAAGRGCMAALEVERFLDS"
misc_feature 363732..364649
/gene="trxB"
/locus_tag="BARCL_0341"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:200090"
misc_feature 364155..364340
/gene="trxB"
/locus_tag="BARCL_0341"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 364715..365620
/locus_tag="BARCL_0342"
/db_xref="GeneID:10138635"
CDS 364715..365620
/locus_tag="BARCL_0342"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcriptional regulator, LysR family"
/protein_id="YP_004158609.1"
/db_xref="GI:319898516"
/db_xref="GeneID:10138635"
/translation="MSLPLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALE
QDVGVPLFQRHARGLILTEQGEILYCTAHDILMKLENARLQLSESCQKPKGCLRVTST
FGMGAGWLAERMPEFLSLYPDMQIQLLFDDEELDLTMRYADCAIRLRQPQQPDLIQRK
LFTVHMHVYASENYIANYGKPEKLSELDEHRIISFGEPVPPYLVGLNWLQKAGRSDDS
VRVSMLQINNIISIKNALMRDLGIAVLPDYIVNNDEKLIRLFPDMSDIPSFDTFFCYS
IALKNSAKLNAFRDYIFLKARKWSF"
misc_feature 364727..365590
/locus_tag="BARCL_0342"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 364733..364912
/locus_tag="BARCL_0342"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 364997..365590
/locus_tag="BARCL_0342"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature order(365027..365029,365039..365041,365156..365158,
365198..365200,365204..365206,365399..365401,
365450..365452,365525..365527)
/locus_tag="BARCL_0342"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature order(365030..365035,365045..365050,365054..365059,
365066..365068,365078..365080,365084..365104,
365285..365287,365381..365395,365414..365419,
365426..365428)
/locus_tag="BARCL_0342"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene complement(365828..366034)
/locus_tag="BARCL_0343"
/db_xref="GeneID:10137433"
CDS complement(365828..366034)
/locus_tag="BARCL_0343"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158610.1"
/db_xref="GI:319898517"
/db_xref="GeneID:10137433"
/translation="MCLLITLLPKQKKGSVNFLLSLVFYILEVLQISIQLSLNNCKNK
SSYRKSLKKYFSEIKKSRTFVRQI"
gene complement(366521..367726)
/gene="aatA"
/locus_tag="BARCL_0344"
/db_xref="GeneID:10137434"
CDS complement(366521..367726)
/gene="aatA"
/locus_tag="BARCL_0344"
/EC_number="2.6.1.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_004158611.1"
/db_xref="GI:319898518"
/db_xref="GeneID:10137434"
/translation="MMGFIADKLSYIKPSATIAVAQKARALKASGRNIISLSAGEPDF
DTPANIKNAAIEAIRRGETKYTPISGIPELRQAISAKFKRENNLTYIPEQIIVGTGGK
QILFNALMATLNKDDEVIIPSPYWVSYPEMVALNSGKSVFVETKAEFFYKLQPQDLET
AITQKTKWFIFNSPSNPSGAAYTHDELKKLTDVLIKYPHIYILTDDIYEHLTYGDFSF
VTPAQVEPQLYGRTLTMNGLSKAYSMTGWRIGYAGGPYELIKAMDIIQGQQTSGTSSI
SQWAGVEALNGPQDFIAKNKNIFQKRRDLVVSMLNQAPGIDCPTPEGAFYVYPSCAKL
IGKKMPQGQIIANDEDFVTALLETESVAVVHGSAFGLGPAFRVSYATSDEILEEACFR
IQRFCNSLR"
misc_feature complement(366524..367723)
/gene="aatA"
/locus_tag="BARCL_0344"
/note="aspartate aminotransferase; Provisional; Region:
PRK05764"
/db_xref="CDD:180244"
misc_feature complement(366542..367624)
/gene="aatA"
/locus_tag="BARCL_0344"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(366983..366985,367007..367012,
367016..367018,367103..367105,367199..367201,
367349..367351,367421..367429))
/gene="aatA"
/locus_tag="BARCL_0344"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(366887..366889,366896..366898,
366983..366991,367124..367126,367319..367321,
367418..367420))
/gene="aatA"
/locus_tag="BARCL_0344"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(367007..367009)
/gene="aatA"
/locus_tag="BARCL_0344"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene complement(368314..368523)
/gene="cspA"
/locus_tag="BARCL_0345"
/db_xref="GeneID:10137953"
CDS complement(368314..368523)
/gene="cspA"
/locus_tag="BARCL_0345"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cold shock protein"
/protein_id="YP_004158612.1"
/db_xref="GI:319898519"
/db_xref="GeneID:10137953"
/translation="MSTGTVKWFNTTKGFGFIQPNDGSADVFVHISAVERSGLNDLNE
GQKISYDVLQDRRSGKFAAGNLSAL"
misc_feature complement(368353..368517)
/gene="cspA"
/locus_tag="BARCL_0345"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(368353..368355,368440..368442,
368473..368475,368500..368502))
/gene="cspA"
/locus_tag="BARCL_0345"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature complement(order(368434..368445,368464..368484))
/gene="cspA"
/locus_tag="BARCL_0345"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene complement(368783..372265)
/gene="carB"
/locus_tag="BARCL_0346"
/db_xref="GeneID:10138043"
CDS complement(368783..372265)
/gene="carB"
/locus_tag="BARCL_0346"
/EC_number="6.3.5.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="carbamoyl-phosphate synthase (subunit B)"
/protein_id="YP_004158613.1"
/db_xref="GI:319898520"
/db_xref="GeneID:10138043"
/translation="MPKRTDIKSILIIGAGPIIIGQACEFDYSGTQACKALKEEGYRI
ILVNSNPATIMTDPDLADATYIEPITPEIVAKIIAHERPDALLPTMGGQTALNTALSL
KRMGILNRYNVEMIGANADAIDKAEDRALFRKAMAKIGLETPRSMLANATELKEENRR
LYEKAYNKLKNELSGDTFDQALEKLEQDWCNAEANRKQHYIAHATAKAVQALDIIGLP
AIIRPSFTLGGTGGGIAYNRSEFYEIIERGLEASPTTEVLIEESILGWKEYEMEVVRD
QKDNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGG
SNVQFAVNPENGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNDI
TGGATPASFEPSIDYIVTKIPRFAFEKFPGSSSVLTTAMKSVGEVMAIGRTFQESLQK
ALRGLETGLTGLDEIILPEHAEGDEKNSIRSAIAIPSPDRLRYVAQAMRIGLPLSEIH
QISKIDPWFLEQIASIIETEQRIRTHGLPHDADNLRMLKAMGFSDARLANLAGKTPDD
IFALRQSLNIKHVFKRIDTCAAEFSSPTAYMYSTYERPFAGVECSEANISERKKVAIL
GGGPNRIGQGIEFDYCCCHAAFALRDAGFEAIMINCNPETVSTDYDTSDRLYFEPLTN
EDVLAILKTEQEKGELVGVIVQFGGQTPLKLASTLEKNNIPILGTSPDAIDLAEDRNR
FQKLLFKLNLTQPKNGIAYSVEQAQLIAHELDFPLVVRPSYVLGGRAMQIIRDKRDLQ
NYLFEIVPELVPEDIKACYPHKKTDQVNTLLYKNPLLFDTYLTEAIEIDVDCLCDGEE
TLVVGIMEHIEEAGIHSGDSACSLPIRTLSYKLVNELENQTKALAKALHVCGLMNVQY
AIKNETIYVLEVNPRASRTVPFVAKTIGRPIAKIATRIMIGESLHSALKAYGGILSTR
QKHIAVKEAVFPFSRFSGVDTLLGPEMRSTGEVMGLDRDFALAFAKAQLGAGVDLPKE
GTLFVSVRDEDKERILKPVKCLIELGFSVLATNGTQKFLAENGIKAEKINKVLEGHPH
IEDAIRNLKVQLIFNTTNTASAISDSKSLRHAALMQKVPYYTTVAGAESVAQAIEAFK
TKSLEVCSLQTYFT"
misc_feature complement(368789..372265)
/gene="carB"
/locus_tag="BARCL_0346"
/note="carbamoyl phosphate synthase large subunit;
Reviewed; Region: carB; PRK05294"
/db_xref="CDD:179998"
misc_feature complement(371900..372178)
/gene="carB"
/locus_tag="BARCL_0346"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(371183..371635)
/gene="carB"
/locus_tag="BARCL_0346"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature complement(370463..370831)
/gene="carB"
/locus_tag="BARCL_0346"
/note="Carbamoyl-phosphate synthetase large chain,
oligomerisation domain; Region: CPSase_L_D3; pfam02787"
/db_xref="CDD:202396"
misc_feature complement(370073..370411)
/gene="carB"
/locus_tag="BARCL_0346"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(369479..370066)
/gene="carB"
/locus_tag="BARCL_0346"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature complement(368846..369175)
/gene="carB"
/locus_tag="BARCL_0346"
/note="Methylglyoxal synthase-like domain from type II
glutamine-dependent carbamoyl phosphate synthetase (CSP).
CSP, a CarA and CarB heterodimer, catalyzes the production
of carbamoyl phosphate which is subsequently employed in
the metabolic pathways...; Region: MGS_CPS_II; cd01424"
/db_xref="CDD:29636"
misc_feature complement(order(368951..368959,369023..369025,
369071..369076,369080..369082,369140..369142,
369158..369160))
/gene="carB"
/locus_tag="BARCL_0346"
/note="IMP binding site; other site"
/db_xref="CDD:29636"
misc_feature complement(order(368990..368992,369026..369028,
369032..369037,369041..369043,369065..369067,
369077..369079))
/gene="carB"
/locus_tag="BARCL_0346"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29636"
misc_feature complement(order(368855..368857,368867..368869,
368882..368884))
/gene="carB"
/locus_tag="BARCL_0346"
/note="interdomain contacts; other site"
/db_xref="CDD:29636"
misc_feature complement(368876..368884)
/gene="carB"
/locus_tag="BARCL_0346"
/note="partial ornithine binding site; other site"
/db_xref="CDD:29636"
gene complement(372897..374093)
/gene="carA"
/locus_tag="BARCL_0347"
/db_xref="GeneID:10138011"
CDS complement(372897..374093)
/gene="carA"
/locus_tag="BARCL_0347"
/EC_number="6.3.5.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="carbamoyl-phosphate synthase small subunit"
/protein_id="YP_004158614.1"
/db_xref="GI:319898521"
/db_xref="GeneID:10138011"
/translation="MIQATSFPSPWNTNKPTALLILANGTVIEGKGAGATGIVEAEVC
FNTAITGYEEILTDPSYTGQIVNFTFPHIGNVGANREDIEDLTSPNYHGAVGAIFKAD
ITGPSNYRAHENLNQWLKERKIIALYDIDTRALTALIREKGVPNAIIAHDPNGNFDVN
ALKKRVKKWSGLINLDLAKEVTSKKLIEWNEKPWIWNKGYSVNSKRNFHIVAIDYGIK
RNILRLISALGARVTIVPASTNADEILSMNPDGIFLSNGPGDPSATAKYAVPTIKTFI
DCNIPIFGICLGHQLLSLAVGAKTIKMHQGHHGANHPVKDFTTGKVEIVSMNHGFTVD
KTSLPQHVEETHISLFDGSNCGIRILEKPIFSVQYHPEASPGPQDSHYLFQRFRNLIV
DYKKTA"
misc_feature complement(372921..374054)
/gene="carA"
/locus_tag="BARCL_0347"
/note="carbamoyl phosphate synthase small subunit;
Reviewed; Region: PRK12564"
/db_xref="CDD:183597"
misc_feature complement(373647..374048)
/gene="carA"
/locus_tag="BARCL_0347"
/note="Carbamoyl-phosphate synthase small chain, CPSase
domain; Region: CPSase_sm_chain; smart01097"
/db_xref="CDD:198165"
misc_feature complement(372930..373466)
/gene="carA"
/locus_tag="BARCL_0347"
/note="Small chain of the glutamine-dependent form of
carbamoyl phosphate synthase, CPSase II; Region:
GATase1_CPSase; cd01744"
/db_xref="CDD:153215"
misc_feature complement(order(372978..372980,372984..372986,
373236..373238))
/gene="carA"
/locus_tag="BARCL_0347"
/note="catalytic site [active]"
/db_xref="CDD:153215"
misc_feature complement(order(372957..372962,372966..372971,
373047..373049,373128..373130,373134..373136,
373155..373157,373161..373163))
/gene="carA"
/locus_tag="BARCL_0347"
/note="subunit interface [polypeptide binding]; other
site"
/db_xref="CDD:153215"
gene complement(374644..374763)
/locus_tag="BARCL_0348"
/db_xref="GeneID:10138010"
CDS complement(374644..374763)
/locus_tag="BARCL_0348"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158615.1"
/db_xref="GI:319898522"
/db_xref="GeneID:10138010"
/translation="MYFAFSISQRLLFTLEKMIPYIVFLYHIAIFPYFVFRFL"
gene complement(374962..375438)
/gene="ubiC"
/locus_tag="BARCL_0349"
/db_xref="GeneID:10137435"
CDS complement(374962..375438)
/gene="ubiC"
/locus_tag="BARCL_0349"
/EC_number="4.1.3.40"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="chorismate--pyruvate lyase (CL) (CPL)"
/protein_id="YP_004158616.1"
/db_xref="GI:319898523"
/db_xref="GeneID:10137435"
/translation="MTDIRTFAFPKLKWLPDQDHSIPTAVSDWLIESGSMTRRFERYC
SSVHAEPQRECFITRNELEEEADHLSNSSRYWLREIVLIGDNKPWLLGRTVIPQETLD
HNQTLMHLGNVLLGRYLFSSNELTRDYIHIGQQGRLWARRSRLHLEGKPLLITEIF"
misc_feature complement(374965..375438)
/gene="ubiC"
/locus_tag="BARCL_0349"
/note="chorismate pyruvate lyase; Provisional; Region:
ubiC; PRK11655"
/db_xref="CDD:183261"
gene complement(375482..375622)
/locus_tag="BARCL_0350"
/db_xref="GeneID:10138642"
CDS complement(375482..375622)
/locus_tag="BARCL_0350"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158617.1"
/db_xref="GI:319898524"
/db_xref="GeneID:10138642"
/translation="MFTTFLQHYPVQKHELKNKNIKNEELAIFKIFCLNFFVYLRVII
IY"
misc_feature complement(375509..>375580)
/locus_tag="BARCL_0350"
/note="Chlorophyll A-B binding protein; Region:
Chloroa_b-bind; cl02879"
/db_xref="CDD:243226"
gene complement(375731..375982)
/locus_tag="BARCL_0351"
/db_xref="GeneID:10137436"
CDS complement(375731..375982)
/locus_tag="BARCL_0351"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158618.1"
/db_xref="GI:319898525"
/db_xref="GeneID:10137436"
/translation="MENTYIGWILAIIIGGLSGWIAQYFMNSRTGIFLNIILGIVGSA
LASFLLSFLEINLAGWLGYLISGFIGACILIWIGRKIRS"
misc_feature complement(375734..375877)
/locus_tag="BARCL_0351"
/note="Transglycosylase associated protein; Region:
Transgly_assoc; pfam04226"
/db_xref="CDD:202936"
gene complement(376313..377560)
/locus_tag="BARCL_0352"
/db_xref="GeneID:10137437"
CDS complement(376313..377560)
/locus_tag="BARCL_0352"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158619.1"
/db_xref="GI:319898526"
/db_xref="GeneID:10137437"
/translation="MPKFFVQYPSLEMISWLVVLILIALLTNFLARILLIHGKKQLSA
FLHKNTTTDIEHITKYIAYIASAFILSTGINFIPTLPNIFSTIIRNVSNAFIIFIVAL
TISTLFNIINTFYEQRPAARLKPIKGYIQITKIALFTLTAIFILATLIDRSPLILFSG
LGAMAAVLILIFQDTLLSLVAGIQISSTDMVRVGDWIEIPNLGADGDVIEIALHTVKV
QNFDKTITTVPIRKLVTDPFKNWRGMEESGGRRIKRSLLIDQASIRFHTKEEEEYLAR
FNLLENYFAQKIPEINEWNARLEKNHDVMANTRRLTNIGTFRAYVLSYLKEHLNIKKN
ATLITRQLPPTPNGLPLEIYCFTNTTIWEEYEQIQADIFDHLYSILPDFGLKLFQNPC
GYDLTRAGYNLKHTLETKQNNKL"
misc_feature complement(376388..377383)
/locus_tag="BARCL_0352"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature complement(<376691..377167)
/locus_tag="BARCL_0352"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 377696..379624
/gene="dnaG"
/locus_tag="BARCL_0353"
/db_xref="GeneID:10137438"
CDS 377696..379624
/gene="dnaG"
/locus_tag="BARCL_0353"
/EC_number="2.7.7.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="DNA primase"
/protein_id="YP_004158620.1"
/db_xref="GI:319898527"
/db_xref="GeneID:10137438"
/translation="MRIPPDFLDEIRARLPISTVIGQRVTFDPKKSKPSRGDFWCCCP
FHGEKTPSFHCDDRQGRYYCFGCNTSGDIFTFLCELDGLRFSESVERLAGFAGMKLPV
FDLQNHKGEIKKNDLYDIMKIAADFFQNNLHHQIGTQARHYLGARGVTLELAKRFQIG
FAPVGRTALKDALSARGISLKQMEDCGLLISGEDIAIPYDRFRNRIIFPIKDLRGRVV
AFGGRSLDKNAQAKYLNSPETVLFHKGNTLYNAASARKNSRSSVKGEAHSILVVEGYM
DVIALTKVGFEKVVAPLGTALTETQIGLLWQMEPNPILCFDGDDAGLKAAFRVADRVL
PLLKAGMSVRFVLLPNGKDPDEIIRAGGAHLFSSFVQKSIPLIELLWWRATFGKHFTT
PEARAALERELKQQISTIKDQDIRRYYFQDIKRRLFDFFRSSFLKQKNEEKYVQDQKD
GMFKDQSFSALANSNIVRSSKNFIPLREAVILLILAYYPELWYENFEVLAKLELKNDQ
LISLHQSMLEILGNQELCDKETMAVFLEKKGQKAILEYIDSLVQKVGMRITFGGAPIE
DARTVLKQAIYLHLQEHHLHKRLQDIEEQLIKNPRDEVFDLLRETKAELEQTQATEAL
IEGFGSWFCEKIYESKPK"
misc_feature 377696..379546
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="DNA primase; Validated; Region: dnaG; PRK05667"
/db_xref="CDD:180189"
misc_feature 377702..377998
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="CHC2 zinc finger; Region: zf-CHC2; cl15369"
/db_xref="CDD:199505"
misc_feature 378074..378442
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="DNA primase catalytic core, N-terminal domain;
Region: Toprim_N; pfam08275"
/db_xref="CDD:203896"
misc_feature 378494..378739
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="TOPRIM_DnaG_primases: The topoisomerase-primase
(TORPIM) nucleotidyl transferase/hydrolase domain found in
the active site regions of proteins similar to Escherichia
coli DnaG. Primases synthesize RNA primers for the
initiation of DNA replication. DnaG...; Region:
TOPRIM_DnaG_primases; cd03364"
/db_xref="CDD:173784"
misc_feature order(378512..378517,378524..378526,378644..378646,
378650..378652,378656..378658)
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="active site"
/db_xref="CDD:173784"
misc_feature order(378512..378514,378644..378646)
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173784"
misc_feature order(378518..378523,378539..378544,378572..378574)
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="interdomain interaction site; other site"
/db_xref="CDD:173784"
misc_feature 378821..>378964
/gene="dnaG"
/locus_tag="BARCL_0353"
/note="DnaB-helicase binding domain of primase; Region:
DnaB_bind; pfam10410"
/db_xref="CDD:204477"
gene 379981..381990
/gene="rpoD"
/locus_tag="BARCL_0354"
/db_xref="GeneID:10138078"
CDS 379981..381990
/gene="rpoD"
/locus_tag="BARCL_0354"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor"
/protein_id="YP_004158621.1"
/db_xref="GI:319898528"
/db_xref="GeneID:10138078"
/translation="MATKVKQKDSVEEMGKVSSDGPLLDFSDDAIKKMIKLAKKNGYV
IMDELNAALSADEFTSEQIEDTLAMFSEMGINVIDDEDEIESEQYEEEIAIEGGDLVE
ATNYAVATTSKREVADRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMISGL
CESPLTFQALIIWREELKEQRILLREIIDLEMTYAGPEAKQAPIIEESEVKKIKEETL
SSSMRDMDDIEEDIGGEDDDEDDDEVNLSLAAMENELCPQVVETLDFIADTYVKLRKL
QDQQVESSLSYRKEEPLSSAQRKQYNQLKDDLIQAVKSLSLNQNRIEALVEQLYDINK
RLIHSEGKLKRLASNYGIGHEDFLREYQGRELDADWVNYIAALSGRGWKEFSTCEAKV
IQNLRSEIQNLAQETAISIGEFRRIVTQVQKGEREAAIAKKEMVEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEKVRKVLKIAKEPISLETP
VGDEDASHLGDFIEDRNALLPIDAAIQANLRDTTTRVLASLTPREERVLRMRFGIGMN
TDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS"
misc_feature 380038..381987
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="RNA polymerase sigma factor RpoD; Validated;
Region: PRK05658"
/db_xref="CDD:180186"
misc_feature 380047..>380211
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma-70 factor, region 1.1; Region: Sigma70_r1_1;
pfam03979"
/db_xref="CDD:112778"
misc_feature 380341..380442
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2;
pfam00140"
/db_xref="CDD:201030"
misc_feature <380875..381195
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma-70, non-essential region; Region:
Sigma70_ner; pfam04546"
/db_xref="CDD:203043"
misc_feature 381283..381495
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 381520..381753
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature 381769..381945
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(381802..381804,381832..381834,381862..381867,
381895..381897,381901..381906,381910..381918,
381922..381927,381931..381933)
/gene="rpoD"
/locus_tag="BARCL_0354"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(382596..383342)
/locus_tag="BARCL_0355"
/db_xref="GeneID:10138527"
CDS complement(382596..383342)
/locus_tag="BARCL_0355"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158622.1"
/db_xref="GI:319898529"
/db_xref="GeneID:10138527"
/translation="MTKIIFQLLNTYRIKLSILTVLSLFATSLFINAEETIKDAPTIT
VTATGENQATPDMAIINLAVVTHDTTAQKALAANNKFMNDIVNTFKNNGIQANDLQTS
GLSIYQTNSDKKREKKNNEIIYHVSNSLTVNIRDLANAGKIFDQAMALGVNSVNGITF
TNADTKPLYKEARKKAIAEAIEKAETLAQAANVKLGKIITISENNNGHYPTPRLMSRA
QHARSYTDTNFSGGELNYNVSVTITFAIDE"
misc_feature complement(382602..383303)
/locus_tag="BARCL_0355"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2968"
/db_xref="CDD:32788"
gene 383514..383588
/locus_tag="BARCL_t04"
/db_xref="GeneID:10137439"
tRNA 383514..383588
/locus_tag="BARCL_t04"
/product="tRNA-Met"
/db_xref="GeneID:10137439"
gene 383515..383588
/locus_tag="BARCL_tRNA4"
/db_xref="GeneID:10138715"
tRNA 383515..383588
/locus_tag="BARCL_tRNA4"
/product="tRNA-Met"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138715"
gene complement(383534..383617)
/locus_tag="BARCL_0356"
/db_xref="GeneID:10137944"
CDS complement(383534..383617)
/locus_tag="BARCL_0356"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158623.1"
/db_xref="GI:319898530"
/db_xref="GeneID:10137944"
/translation="MKISIWLGKRGPGGTRTPNQAVMSRWL"
gene 383714..383869
/locus_tag="BARCL_0357"
/db_xref="GeneID:10137440"
CDS 383714..383869
/locus_tag="BARCL_0357"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158624.1"
/db_xref="GI:319898531"
/db_xref="GeneID:10137440"
/translation="MNLRFIAMIGFTKSRLVRGGEVSLININPNSQVKGYECLKAKAV
YQEIKEL"
gene 384915..385970
/gene="lytB"
/locus_tag="BARCL_0358"
/db_xref="GeneID:10137441"
CDS 384915..385970
/gene="lytB"
/locus_tag="BARCL_0358"
/EC_number="1.17.1.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-enyl diphosphate
reductase"
/protein_id="YP_004158625.1"
/db_xref="GI:319898532"
/db_xref="GeneID:10137441"
/translation="MSILPPLTIRLCGPRGFCAGVDRAIQIVILALKKYGSPVYVRHE
IVHNRYVVEGLQKRGAIFIEELHEIPEAHRSQPVVFSAHGVPKSVSEEAVRYNLFYLD
ATCPLVSKVHKQAIRHQRHGRHVILIGHAGHPEVIGTMGQLKEGAMTLIETVEDALHY
QPDNPNELGFVTQTTLSVEDTAEIINVLQRRFPALAAPAAESICYATTNRQDAVKAAA
LESDLFLIVGSPNSSNSRRLVEVAERFGARQSILIQRANEIDFDNLGILSVIGLSAGA
SAPEIIVDEIITAFRARYDVKIELAETIVETETFLVNRELRDINLSPQDVAFIKGRAE
TFRNKNDDNKSMREKMK"
misc_feature 384933..385841
/gene="lytB"
/locus_tag="BARCL_0358"
/note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
Reviewed; Region: ispH; PRK01045"
/db_xref="CDD:179212"
misc_feature 384936..385793
/gene="lytB"
/locus_tag="BARCL_0358"
/note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate
reductase (IPP and DMAPP forming); Region: ispH_lytB;
TIGR00216"
/db_xref="CDD:161769"
gene 386430..386897
/gene="rnhA"
/locus_tag="BARCL_0359"
/db_xref="GeneID:10138291"
CDS 386430..386897
/gene="rnhA"
/locus_tag="BARCL_0359"
/EC_number="3.1.26.4"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ribonuclease H"
/protein_id="YP_004158626.1"
/db_xref="GI:319898533"
/db_xref="GeneID:10138291"
/translation="MLDRKKVIEIYTDGACSGNPGLGGWGAILRWNGYERELYGGEVY
TTNNQMELMAAIRALNVLKESCSVELYTDSAYVRNGISTWLEGWKKNNWRTASKNPVK
NMKLWQALDDVCSRHDIKWHWIKGHAGHPDNERADALARKAITEYRENGRFSA"
misc_feature 386451..386861
/gene="rnhA"
/locus_tag="BARCL_0359"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature order(386466..386477,386565..386573,386580..386582,
386646..386648,386796..386798,386850..386852)
/gene="rnhA"
/locus_tag="BARCL_0359"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature order(386466..386468,386580..386582,386646..386648,
386838..386840)
/gene="rnhA"
/locus_tag="BARCL_0359"
/note="active site"
/db_xref="CDD:187702"
gene complement(386906..387712)
/locus_tag="BARCL_0360"
/db_xref="GeneID:10138485"
CDS complement(386906..387712)
/locus_tag="BARCL_0360"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158627.1"
/db_xref="GI:319898534"
/db_xref="GeneID:10138485"
/translation="MKIIFVFLGFFYFLINSQAEQNPYLIATPWHESEGGRARLAITS
SSLSRIKNGIIEITLKPKWKTYWRNPGNSGMAPFFKFNQQVSYEILYPTPQLYKTQND
WSLGYKNKVVLPFNVSGSNENLSGSLTLGMCDEICIPFTIDFNFSSSNPDNTSLSPSL
LKKAQDILPRTAHNALKIHAEKDGNTLLIKIKNNQIITTSALFLDGGTMQIGPAKKIS
DYEGYAVFSAPIYFDSDELKKTVFYTVSYKDYALSGTFTINTQSSHTVIP"
misc_feature complement(<387092..387712)
/locus_tag="BARCL_0360"
/note="Disulphide bond corrector protein DsbC; Region:
DsbC; cl15830"
/db_xref="CDD:210230"
gene 387855..388439
/locus_tag="BARCL_0361"
/db_xref="GeneID:10137442"
CDS 387855..388439
/locus_tag="BARCL_0361"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158628.1"
/db_xref="GI:319898535"
/db_xref="GeneID:10137442"
/translation="MKQREGFLNGQLLIAMPGMNDKRFVRSVIYICAHSNAGAMGIIL
NQLHNINFPELLLQLGVINQNQKKYLSEPIKKFPIRCGGPIDTSRGFVLHSDDYACEA
TISITDKICLTTTLDVLKAMSCGQGPQHALIALGYAGWKAGQLETEIYTNGWLISPTS
PSFLFESNISSKYDESFIRMGISPTSLISEVGHA"
misc_feature 387855..388436
/locus_tag="BARCL_0361"
/note="hypothetical protein; Validated; Region: PRK00228"
/db_xref="CDD:178938"
gene complement(388473..391358)
/locus_tag="BARCL_0362"
/db_xref="GeneID:10137443"
CDS complement(388473..391358)
/locus_tag="BARCL_0362"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158629.1"
/db_xref="GI:319898536"
/db_xref="GeneID:10137443"
/translation="MKSLSKIINIILVIIISLFVHLASAQAIEPIKISPQDIAIDLSK
AIEIHHTNNSIFQTSTAPGPDGIIWRIEVQAKSENFSGNWAVFALANPTDEQIDRLIV
IPHYRMAHSGFLWPNLGSVRIQSITPSAGFSLDRQTNANSDIFRITLNPGTVITFVAE
LSSKNLPQIYLWQPEAYKDTINSYTLYHGILLGISGLLALLLTILFVVRGTSLFPATA
AVAWAVLFYIGIDFNFWNKIFAITPITEPIWRAGTEVALAATLFIFLFTYLCLNRWHY
HFSYGAIIWIISLCGLGAFAIYDPSRAAGIARLSFGLTTILGIILIGYFSIRRYDRAI
MLIPTWLLISFWSLEAYACIIGYLDNDIVQPALAGGLVLIVLLISFLVMQQTFSNDAF
HEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDMTTLFGPETCKLNGTMSDWIS
ALHYDDRERFQAVLNIILEHKKGRIDQIFRLSSGGGHYHWFSLRARPAIQKDGKITRV
IGSIVNITNHKKAEERLLYDAIHDSLTGLPNQQIFLDRLQNYASLAKANIKIRPTIFM
IDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSADRFAIILLSETEPK
KIAMFANHLHKTISAPITLEKKTIMLSASIGLVTWSDNRLTAQNIFNDSELAMIHAKQ
MGGNHIEPFRPNFRTLDLEHNNINKDIHHAIKRNEIKILYHPILNLSDGQIIGFETIV
EWHHPNHGNLNVHDFIKIVESEQLVMDLVQFIIDHAIVDLINIQEKCTKHPFFISINL
PSAEMIHPDFISQLRSTLLRNPVNKGRLMIEISELVLRKNPEQSAHFFEQIKSLGMNL
ALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSPKKKLVLKSIIRMATDLNLQIIAE
GVENEKEAIFLRQEGCKYVQSTIVTKPIAIEELVALVQNHFSHTYNK"
misc_feature complement(390837..391241)
/locus_tag="BARCL_0362"
/note="7TMR-DISM extracellular 2; Region: 7TMR-DISMED2;
pfam07696"
/db_xref="CDD:191816"
misc_feature complement(389823..390092)
/locus_tag="BARCL_0362"
/note="PAS fold; Region: PAS_3; pfam08447"
/db_xref="CDD:203948"
misc_feature complement(389292..389768)
/locus_tag="BARCL_0362"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(389526..389528,389655..389657))
/locus_tag="BARCL_0362"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(389523..389534,389538..389540,
389604..389606,389616..389618,389628..389633,
389640..389642))
/locus_tag="BARCL_0362"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(389463..389465,389550..389552))
/locus_tag="BARCL_0362"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature complement(388521..389240)
/locus_tag="BARCL_0362"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(391813..393096)
/locus_tag="BARCL_0363"
/db_xref="GeneID:10137444"
CDS complement(391813..393096)
/locus_tag="BARCL_0363"
/EC_number="3.4.23.28"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="processing protease protein"
/protein_id="YP_004158630.1"
/db_xref="GI:319898537"
/db_xref="GeneID:10137444"
/translation="MGVDISRLSNGLSIATHKMPQIESVALGIWVKVGSRNETFKQHG
IAHLLEHMAFKGTENRTAFKIATDIEDVGGEINATTSIETTAYFARVLKEDIPLAIDI
LADIMTCSKFDEDELEREKQVIFQEIGATCDVPDDIVFDHFTETAFRHQSLGRSILGT
QQTVQSFTSADLHNFMNQQYSADRMVVVATGAVEHEDFLRQVESCLGTFRSHSTAPLI
NLANYIGGDFREYRDLMDTQVVLGFEGRPYHAHDFYAAQILSIILGGGMSSRLFQEVR
EKRGLCYSIYAFHWGFSDTGLFGLHAATGQEGLETLLPVILDELCKISKNIHTNELQR
AQAQYRANLTMSQENPSSQAHLIARQMLLYGRPIPISEMTECLELITLEQLTDLAKRL
FINSNPTFAAVGPTGPLMNFDDLVSTLSPNINCLL"
misc_feature complement(391858..393096)
/locus_tag="BARCL_0363"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature complement(392617..393057)
/locus_tag="BARCL_0363"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature complement(392080..392601)
/locus_tag="BARCL_0363"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene complement(393967..394662)
/locus_tag="BARCL_0364"
/db_xref="GeneID:10137445"
CDS complement(393967..394662)
/locus_tag="BARCL_0364"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158631.1"
/db_xref="GI:319898538"
/db_xref="GeneID:10137445"
/translation="MPQIDLIIFDCDGVLVDSEYLVAKIGSQLLKKIGYKISPEELSE
RYSGLVFQDTLKKIEQEIKKPISANFIDQMAHLFRAQMKTELRVINGIKEAIEIIKSY
YSYCICSNAMSIDIKDMLKTVNLYHLFENKIFSAPEVGTKKPKPAPDVFLFAAQELRV
QPENTIVIEDSIHGVYAAATARMRVIGFTGGSHSYLGHSNALIEAGAETVITKHAHLL
ETLEAMKIWRDSQ"
misc_feature complement(393985..394656)
/locus_tag="BARCL_0364"
/note="Predicted phosphatase/phosphohexomutase [General
function prediction only]; Region: COG0637"
/db_xref="CDD:30982"
misc_feature complement(394099..394410)
/locus_tag="BARCL_0364"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(394336..394338)
/locus_tag="BARCL_0364"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 394946..396106
/gene="ccrM"
/locus_tag="BARCL_0365"
/db_xref="GeneID:10137446"
CDS 394946..396106
/gene="ccrM"
/locus_tag="BARCL_0365"
/EC_number="2.1.1.72"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="adenine DNA methyltransferase protein CcrM"
/protein_id="YP_004158632.1"
/db_xref="GI:319898539"
/db_xref="GeneID:10137446"
/translation="MVSVVECFMTIVQLQKNQVCTSSQTQWRNKIFKGDCVAVLEKLP
KHSVDMIFADPPYNLQLEGVLYRPDHSRVNAVDDAWDQFESFSAYDAFTRAWLLACRR
VLKPNGTIWVIGSYHNIFRVGTALQDLGFWMLNDIIWRKNNPMPNFRGRRFQNAHETL
IWAVRDQKDKKYTFNYNALKAANEDRQMRSDWLFPLCTGAERLKDKVGRKLHPTQKPQ
SLLARIIIASSKPGDVILDPFFGSGTTGAVAKLFGRDFVGIEREQHYIDAACERIAAI
KPLAESELEILKTKKTEPRVAFSSLLDLGLLYPGSVLYDKKKEISAIVRADGTIMYGG
EAGSIHMIGRKAQASQSCNGWTFWYYEENGLLKSIDDLRMMIRSQMLKANVI"
misc_feature 395024..395869
/gene="ccrM"
/locus_tag="BARCL_0365"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:31203"
misc_feature <395027..>395128
/gene="ccrM"
/locus_tag="BARCL_0365"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature 395087..395752
/gene="ccrM"
/locus_tag="BARCL_0365"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:201857"
gene complement(396174..397232)
/gene="mutY"
/locus_tag="BARCL_0366"
/db_xref="GeneID:10138020"
CDS complement(396174..397232)
/gene="mutY"
/locus_tag="BARCL_0366"
/EC_number="3.2.2.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_004158633.1"
/db_xref="GI:319898540"
/db_xref="GeneID:10138020"
/translation="MYEISSLLLSWYDKNYRHLPWRMSPQKQIKGIYPDPYQIWLSEV
MLQQTTVETVKPYFKKFLKLWPNLFSLSQASQEDIMKAWAGLGYYSRARNLKNCATQL
VKNHGGKFPQSVKILRTLPGIGDYTAAAIAAIAFGYPVAVVDGNVERVITRLFAITSV
LPKAKSEIKEKTQEITDVQRPGDFAQAMMDLGATICTPRKPSCLLCPLQSVCKAIKMQ
TVEAFPVKAPKKERPFKIGAAFVALNENKQIYLEKRQNTKLLNGMTQIPNNIGINEEN
GLQNAPFSANWELKGQITHIFTHFSLKLNVYCADNIRGIKLENGWWCDIHHLTQEALP
TVMKKAIAIAISSPFKFK"
misc_feature complement(396198..397232)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="A/G-specific DNA glycosylase [DNA replication,
recombination, and repair]; Region: MutY; COG1194"
/db_xref="CDD:31387"
misc_feature complement(396657..397124)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature complement(order(396960..396962,397074..397076,
397083..397091))
/gene="mutY"
/locus_tag="BARCL_0366"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature complement(396852..396875)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature complement(order(396666..396668,396678..396680,
396843..396845))
/gene="mutY"
/locus_tag="BARCL_0366"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature complement(396801..396803)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="active site"
/db_xref="CDD:28938"
misc_feature complement(396591..396650)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3); Region:
FES; smart00525"
/db_xref="CDD:197771"
misc_feature complement(396201..396530)
/gene="mutY"
/locus_tag="BARCL_0366"
/note="DNA glycosylase (MutY in bacteria and hMYH in
humans) is responsible for repairing misread A*oxoG
residues to C*G by removing the inappropriately paired
adenine base from the DNA backbone. It belongs to the
Nudix hydrolase superfamily and is important...; Region:
DNA_Glycosylase_C; cd03431"
/db_xref="CDD:72889"
misc_feature complement(order(396336..396341,396348..396350,
396453..396461))
/gene="mutY"
/locus_tag="BARCL_0366"
/note="DNA binding and oxoG recognition site [nucleotide
binding]"
/db_xref="CDD:72889"
gene 397422..397934
/locus_tag="BARCL_0367"
/db_xref="GeneID:10138335"
CDS 397422..397934
/locus_tag="BARCL_0367"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158634.1"
/db_xref="GI:319898541"
/db_xref="GeneID:10138335"
/translation="MVWDRMSKKLQTYHFYSISEMVSEMLDPILRKRTGLNISLIEHW
SQIVGQDIGEHTMPIKIIWKCRTDQSETFYPATLVVACKGGFAALKLMHETDELIQRI
NGFFGYIAIGRIKIEQKQVPVFTDRPKIKLFPDEKKKQRLEKMLEGIEDESLYQSLYK
LGYCIFVEKK"
misc_feature 397473..397931
/locus_tag="BARCL_0367"
/note="Protein of unknown function (DUF721); Region:
DUF721; cl02324"
/db_xref="CDD:207571"
gene 398048..398698
/locus_tag="BARCL_0368"
/db_xref="GeneID:10137447"
CDS 398048..398698
/locus_tag="BARCL_0368"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158635.1"
/db_xref="GI:319898542"
/db_xref="GeneID:10137447"
/translation="MINYRFIVSFVVIFIWSITAQARATTTLISKTEPVATVDMAELL
KSGKVKDRVEGEENAPVTIIEYASLTCTFCADFYNVILPELRKKYIKTGKVKLIFRDF
AYDPRATAGFMLARCAPEDRYFPLIEVLFQKQYEWAGAKDALEPLKKIAFMAGFTDES
FSACLKNQSILDEVNASFERGKELGVTATPTFFINGKKYEGAMSMEALFTAIDNFL"
misc_feature 398192..398686
/locus_tag="BARCL_0368"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
misc_feature 398231..398686
/locus_tag="BARCL_0368"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
gene 398865..401564
/gene="ppdK"
/locus_tag="BARCL_0369"
/db_xref="GeneID:10137448"
CDS 398865..401564
/gene="ppdK"
/locus_tag="BARCL_0369"
/EC_number="2.7.9.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="pyruvate phosphate dikinase"
/protein_id="YP_004158636.1"
/db_xref="GI:319898543"
/db_xref="GeneID:10137448"
/translation="MLVTERIYAMTKWVYSFGNGQAEGSASERNLLGGKGANLAEMSN
LGLPVPPGFTLTTEVCNFYYTHDGVYPEDLQKAVRQALQRVGEQTQREFAHKQRPLLL
SVRSGARSSMPGMMDTVLNLGMNDETVEAIAIQTNNECFAYDSYRRFIQMYSNVVLGM
EHSYFEEILDEVKARNGYDVDTEMTAADWKSIIVLYKACIEEKLGEPFPKDPEKQLWG
AIGAVFSSWMTARAITYRRLHNIPESWGTAVNVQAMVFGNMGEDSATGVAFTRNPSTG
KKELYGEFLVNAQGEDVVAGIRTPQNITEVARIAAGSNKPSLEKIMPEAFSKLCQIAH
KLEQHYRDMQDLEFTIEKGKLWILQTRSGKRTARAALKTAVEMVEEGLISREEAVMRI
EPKSLDQLLHPMLDPKATRCVIACGLPASPGAATGEIVFTSEEAERASIEGRKVILVR
VETSPEDLHGMHAAEGILTTRGGMTSHAAVIARGMGKPCVSGASSLRIDYKTNKMIAS
GQIFQKGDIITLDGGTGEVLKGKVAMLQPELCGDFAQLMEWADGMRRMKVRANAETVI
DAQMGRSFGAEGIGLCRTEHMFFTDERIVAMREMILSNDEDGRRKALDKLLPMQRSDF
TQLFEIMSGLPVTIRFLDPPLHEFLPKTDSEILDVAIAMGIPSELLVERVQQLHEFNP
MLGLRGCRLIITYPEIAEMQARAVFEAVVESAKKTGSPVIPEIMVPLVALKSELDFVK
ARIDYVAGEVMNEKKVNIQYIVGTMIELPRAALRADEIAETAEFFSFGTNDLTQTTFG
ISRDDAASFLTTYLQKELLEKDPFVSIDRNGVGELIAIAAQRGRSQRAKIKLGICGEH
GGDPYSIALCEENDLDYVSCSPFRVPVARLAAAQSAIAKKTFD"
misc_feature 398889..401552
/gene="ppdK"
/locus_tag="BARCL_0369"
/note="pyruvate phosphate dikinase; Provisional; Region:
PRK09279"
/db_xref="CDD:181751"
misc_feature 398940..>399263
/gene="ppdK"
/locus_tag="BARCL_0369"
/note="Pyruvate phosphate dikinase, PEP/pyruvate binding
domain; Region: PPDK_N; pfam01326"
/db_xref="CDD:201730"
misc_feature <399495..400004
/gene="ppdK"
/locus_tag="BARCL_0369"
/note="Pyruvate phosphate dikinase, PEP/pyruvate binding
domain; Region: PPDK_N; pfam01326"
/db_xref="CDD:201730"
misc_feature 400191..400430
/gene="ppdK"
/locus_tag="BARCL_0369"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature 400473..401543
/gene="ppdK"
/locus_tag="BARCL_0369"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
gene complement(401724..401882)
/locus_tag="BARCL_0370"
/db_xref="GeneID:10138415"
CDS complement(401724..401882)
/locus_tag="BARCL_0370"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158637.1"
/db_xref="GI:319898544"
/db_xref="GeneID:10138415"
/translation="MFWLISQKLMFILDKNIEGKNAITKGKIEGVEFVCIITILSRSL
IVQFIIIY"
gene complement(402147..402221)
/locus_tag="BARCL_tRNA37"
/db_xref="GeneID:10137449"
tRNA complement(402147..402221)
/locus_tag="BARCL_tRNA37"
/product="tRNA-Gln"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10137449"
gene complement(402768..403547)
/locus_tag="BARCL_0371"
/db_xref="GeneID:10137941"
CDS complement(402768..403547)
/locus_tag="BARCL_0371"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158638.1"
/db_xref="GI:319898545"
/db_xref="GeneID:10137941"
/translation="MKKEYVWFTSRAAIWSPRFSGLAFLILLFSTFLQRYSMIRVSDF
IVLVIFSACCIFLSLFLAIKALYNLWTYGTRGGMKALKGIIYSLITATPLILSIGRGI
ALPAIYDVSTDTQKPPVFFRTLRPSDSLPLKNDLIKQAAVQMLQWPEMSGRRYDGSPD
YIRKSIFNVLAAYGWPILAQQIIKNEDNEFYIETIAKTVCLGFVSDIVIRLTDEGNTT
FVDMRATSRHLLRDFGTNASFIIAFMDALDTEIASIPFSSS"
misc_feature complement(402807..403223)
/locus_tag="BARCL_0371"
/note="Protein of unknown function (DUF1499); Region:
DUF1499; pfam07386"
/db_xref="CDD:203627"
gene 403957..405786
/locus_tag="BARCL_0372"
/db_xref="GeneID:10137450"
CDS 403957..405786
/locus_tag="BARCL_0372"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="Hemin binding protein B"
/protein_id="YP_004158639.1"
/db_xref="GI:319898546"
/db_xref="GeneID:10137450"
/translation="MITKYLVTISVFSFILASRVQGADIINHQDSRSIVAPVYSWKGF
YLGGQIGGFSGLTTFNYHKYDNIEKWNSIDEDLSSEIFGFTGGFYAGSNFDFGNGFIL
GVDTDIVFSNKKDTKVFVKNKFKDLVQPKRPKDLARVTKPSSPPPYKEMLVITPSGEK
IISRSGEDKSLQKPADSLHPPASSIGEPASQKEMVTSPGPLLARSLSSPSEQDKREGS
TDTSKEAVMVTQSPSSSSSEPKVIIVEKTETIIPSLKQGEKIEIFVPETSAETVEVAE
TVKAKVQDSGKVTQAAEVTQESSTMAGQSEISSVPVVTITVVQQPSVIKPQQQSVVTT
ILQPQPIIQQKSQETVIVLDSYQSDDTNSITEKSSSDTVSKVRRSKRSTDASSKDKQL
VIQSSSSSSSSSSSSSSHETKSVTITKTETKIPPLPQRSSTRSFSLSSPSSPAVMGSG
IPENVRMNAERGENSAKPRMNAERGASLAKPMSRKHDLVETYTHNLKQKWSGATRIRL
GLAAGRFMPYIAGGVAYTKIQGTFSKLIKEIGKENTSSNLFDSVETMIGYTLSGGFDF
AMTDRVLIRSEYRYSDFGEKKFKKINSKYYKINDVRIGLAYKF"
misc_feature <405445..405783
/locus_tag="BARCL_0372"
/note="Opacity protein and related surface antigens [Cell
envelope biogenesis, outer membrane]; Region: COG3637"
/db_xref="CDD:33435"
gene 406455..407933
/locus_tag="BARCL_0373"
/db_xref="GeneID:10137451"
CDS 406455..407933
/locus_tag="BARCL_0373"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158640.1"
/db_xref="GI:319898547"
/db_xref="GeneID:10137451"
/translation="MENNRGIFLGAHYQKESNEFQSAYIWFQYANRHGLITGATGTGK
TITLQVLAESFSAEGVPVFCADIKGDLSGIAKAGVMNDKIKDRLVATGLKTIEMRDNP
VIFWDLFGVQGHPIRTTLADMGPLLLSRMLDLTPVQEGVLNIVFRIAADEGFLLIDLK
DLQAMLIYSADRASELSARYGNISKSSVGAIQRQLLVLEAQGGNHFLGEPILELPDIM
RTQIDGQGFINILAADKLISHPRLYSTFLLWLMSKLFEQLPEIGDPEKLRLIFFFDEA
HLLFNNASKALIEKIEQIVRLIRSKGVGIYFISQNPLDIPETILTQLGNRIQHALRAY
TPREVKAVKSAASTFRANPQFDTMEAIGQLAIGEALISTLERKAVPSVVQRILIRPPH
SQIGPIMQNEREKLIASSPVFGHYEQDINRDSADEMLSRSRKEKTSVSTKNNRQQSIL
DAVIKAATRSMTNTLGRVLVKEGKNILRGVLGNILGGKRKDR"
misc_feature 406515..407924
/locus_tag="BARCL_0373"
/note="Bacterial protein of unknown function (DUF853);
Region: DUF853; pfam05872"
/db_xref="CDD:114590"
gene 408182..408784
/gene="sodB"
/locus_tag="BARCL_0374"
/db_xref="GeneID:10137452"
CDS 408182..408784
/gene="sodB"
/locus_tag="BARCL_0374"
/EC_number="1.15.1.1"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Superoxide dismutase"
/protein_id="YP_004158641.1"
/db_xref="GI:319898548"
/db_xref="GeneID:10137452"
/translation="MTFKLVELPYDYDALSPYMSRETLEYHHDKHHLAYLTNTNNFIK
DLGLENKSLTDIIKETFGKNPGLFNNAAQYYNHNHFWNWMKKGGGGKKLPAKLAKAIE
SDLGGYDKFRADFIAAGVAQFGSGWAWVALKDGKLEIMKTPNGENPLIHDAQPILGVD
VWEHSYYIDYRNARPKYLEVFVDHLINWDYVLELYESYGL"
misc_feature 408182..408775
/gene="sodB"
/locus_tag="BARCL_0374"
/note="Superoxide dismutase [Inorganic ion transport and
metabolism]; Region: SodA; COG0605"
/db_xref="CDD:30950"
misc_feature 408185..408433
/gene="sodB"
/locus_tag="BARCL_0374"
/note="Iron/manganese superoxide dismutases, alpha-hairpin
domain; Region: Sod_Fe_N; pfam00081"
/db_xref="CDD:200985"
misc_feature 408482..408766
/gene="sodB"
/locus_tag="BARCL_0374"
/note="Iron/manganese superoxide dismutases, C-terminal
domain; Region: Sod_Fe_C; pfam02777"
/db_xref="CDD:202388"
gene complement(408870..410963)
/gene="ptrB"
/locus_tag="BARCL_0375"
/db_xref="GeneID:10138578"
CDS complement(408870..410963)
/gene="ptrB"
/locus_tag="BARCL_0375"
/EC_number="3.4.21.83"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Protease II"
/protein_id="YP_004158642.1"
/db_xref="GI:319898549"
/db_xref="GeneID:10138578"
/translation="MACSSVLPPKASKIIHKEIHHGIHREDYYHWLRASNWQDVLKKP
SCLDKNIRHHLEIENAYQADQMADTKSLQDLLFLEMKSRIQENDSSVPIKHGPFAYGF
SYVIRGQQPHYFRTPRNGGEKDVYLNGDVLANGKDYFKLGSVQISPNHTYAAWTYDDK
GSEYYTAKIHNFEVLPHYTDTITNISGKIVWDANSEGFFYTKMDENHRPSELYYHRLN
TDQTQDKLIFCENDPGFFLHVSSSKLNDFIYINIHDHETSEIWLIPADAPFNSPQCVR
KREKGIEYSLTEGGDIFYILTNRDNAKDFKIMVAPCTSPQSEHWSEIVPHQLGRLILF
HDAYQEFLIWLEQFEGLPRIQIMERDTKQTHSIAFTEEAYSLDLQGAAEYNSQTIRFS
YSSMTTPNQIFDYEIKSRKKILLKTQKIPSGHNQDDYITQRIMATANDGEKIPISLFY
HKTTDLNGNAPCLLYGYGAYGSSISANFNSNILSLVNRGFIYAIAHIRGGKEKGMEWY
EKGKHLFKKNTFTDFIACGRHLVNNKFTAHDRLIAYGGSAGGMLMGTIANIAPQDFAG
IIANVPFVDVLTTMLDASLPLTPLEWPEWGNPLESEEDYKLISSYSPYDNIKAQQYPP
ILAIAGLTDPRVTYWEPAKWVAKLRDLKTDDNAVLLRINMDSGHGGAPGRFSKLKEIA
YIYAYILKIVGKNTC"
misc_feature complement(408882..410945)
/gene="ptrB"
/locus_tag="BARCL_0375"
/note="Protease II [Amino acid transport and metabolism];
Region: PtrB; COG1770"
/db_xref="CDD:31956"
misc_feature complement(408882..409538)
/gene="ptrB"
/locus_tag="BARCL_0375"
/note="Prolyl oligopeptidase family; Region: Peptidase_S9;
pfam00326"
/db_xref="CDD:201156"
gene 411491..411928
/gene="rosAR"
/locus_tag="BARCL_0376"
/db_xref="GeneID:10138439"
CDS 411491..411928
/gene="rosAR"
/locus_tag="BARCL_0376"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_004158643.1"
/db_xref="GI:319898550"
/db_xref="GeneID:10138439"
/translation="MEHPPVLETESNLVITLVADIVAAYVSNNSIRPAEVPNLIADVH
AAFLKAGNMTLAEVEVEKQRPAVNPKRSIFPDYLICLEDGKKFKSLKRHLMTHYGMLP
EEYREKWQLDSSYPMVAPNYAKARSALAKEMGLGRKSEKKRIK"
misc_feature 411512..411919
/gene="rosAR"
/locus_tag="BARCL_0376"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG4957"
/db_xref="CDD:34565"
misc_feature 411515..411901
/gene="rosAR"
/locus_tag="BARCL_0376"
/note="ROS/MUCR transcriptional regulator protein; Region:
ROS_MUCR; pfam05443"
/db_xref="CDD:147562"
gene complement(412036..412446)
/locus_tag="BARCL_0377"
/db_xref="GeneID:10138488"
CDS complement(412036..412446)
/locus_tag="BARCL_0377"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158644.1"
/db_xref="GI:319898551"
/db_xref="GeneID:10138488"
/translation="MTETIDDIIKNFSQLDNWEDRYHYVIELGHALPPFPESARNDAN
KVRGCVSQVWLLSSRDNSENPILTFQGDSDAHIVRGLIYILLAFYSGKKASEIRTADA
EGLLAILGLNENLTPQRSNGLRAMIKRIRAESSL"
misc_feature complement(412048..412446)
/locus_tag="BARCL_0377"
/note="Cysteine desulfurase SufE subunit
[Posttranslational modification, protein turnover,
chaperones]; Region: sufE; COG2166"
/db_xref="CDD:32349"
gene complement(412581..412937)
/locus_tag="BARCL_0378"
/db_xref="GeneID:10137453"
CDS complement(412581..412937)
/locus_tag="BARCL_0378"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158645.1"
/db_xref="GI:319898552"
/db_xref="GeneID:10137453"
/translation="MIRFLIKSVFLLFFIFVIVSFFATKQNNNNLSFPKETDATTRDA
IIALKETINDLGMFCERNIEACKIGKSLLSSMGERARNGSKIIYEYLNHTFSNKNTSA
SQEDNSNTGTANPKEK"
gene 413806..414306
/locus_tag="BARCL_0379"
/db_xref="GeneID:10137454"
CDS 413806..414306
/locus_tag="BARCL_0379"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="peptidoglycan binding protein"
/protein_id="YP_004158646.1"
/db_xref="GI:319898553"
/db_xref="GeneID:10137454"
/translation="MLVSIMTNKRKKRKNKSVKQWSITIAFLALICRFILWLIKQIYR
HTCTNACLVIGLFIFIISFGFFVVNALFSQMKTQQEVLININLTLVSAVIEASILSEQ
QTRIQSNSHIVSISSSLHQDLPLCFLQSAMPGNLLETQEKLVKMRLNSGFLDEVSNAN
IHYTRV"
gene complement(414680..415168)
/locus_tag="BARCL_0380"
/db_xref="GeneID:10137455"
CDS complement(414680..415168)
/locus_tag="BARCL_0380"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158647.1"
/db_xref="GI:319898554"
/db_xref="GeneID:10137455"
/translation="MHICILLLLPHYTRNNIWTRLEKIGPTYQFVDLDSYDPIRQSAD
PLFLLKVCKFDLDNGPVHLTTPQTTQFWSLSAYTREGIIFYNLNDKTTPNAKLNLIIG
NPLQITELKQSKIEHTPNSVLVAHKLNEGFTILRVFAPSPLEKKESEDFLAKATCRIF
NK"
misc_feature complement(414689..415168)
/locus_tag="BARCL_0380"
/note="Protein of unknown function (DUF1254); Region:
DUF1254; cl02257"
/db_xref="CDD:207562"
gene complement(415212..415730)
/locus_tag="BARCL_0381"
/db_xref="GeneID:10137456"
CDS complement(415212..415730)
/locus_tag="BARCL_0381"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158648.1"
/db_xref="GI:319898555"
/db_xref="GeneID:10137456"
/translation="MLNNDINFECLKIGEWTTYLHVGTTKANPYTRARTAKHGDISLG
HPENLIFQLWTDNQGRPLRPDCHYLLKGHIPETRLFTLYAADKFLKPYTSRNNIPFAL
HTYNVIYENDGSLRINISPAPQTGNWLASTSQKQFGLILTLYDTSIISTTALRKPMMP
SIERIPSGEKCA"
misc_feature complement(415236..415709)
/locus_tag="BARCL_0381"
/note="Protein of unknown function (DUF1214); Region:
DUF1214; cl08447"
/db_xref="CDD:208937"
gene complement(415816..417975)
/gene="pbp"
/locus_tag="BARCL_0382"
/db_xref="GeneID:10137457"
CDS complement(415816..417975)
/gene="pbp"
/locus_tag="BARCL_0382"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="penicillin binding protein"
/protein_id="YP_004158649.1"
/db_xref="GI:319898556"
/db_xref="GeneID:10137457"
/translation="MFDFLKKKKIQQNKSFHSPELIELDAWLDTTFYNIRVSHNCFWN
KTALISQRFRVRGWKRYIVEILDETLTLGLIGFILFTIVGISVFELTKKDWYSSKNFS
VLFLDRYGNSIGHRGALPALSVPVEEMPDHLIKAVLATEDRRFFHHWGIDFYGLIRAI
TQNIQAKIIVQGGSTLTQQLAKNLFLTHERTITRKIKEAYLALWLEANLKKKQILQLY
LERVYMGGNNFGITAASKFYFDKNIRNISLAESAILAGLFKAPTKYAPHSNLLAARAR
ANVVLSNLVDSGFMTDSQIIKAYRHPAKIITKVKNSQPNYFLDWAFDEIRQISSQLPS
HTLIVQTTLDPNIQRAAEEAIEYYLYQYGPQYHATQAATVILDNNGAVRAIVGGVDYE
KSQFNRATQGGRQPGSSFKPYVYATAMERGLSPSTIVSDKPINWGGWSPRNNSGRYIG
NVDLATALAFSINTVPVHITYQYLNRDTQPIRNLIKNMGINSHILSHKTMILGTSNMT
PMDQAIGFNVFANGGVAGNHHGFTRISTIDGHVIWDWTRNGKKPYQVISEQSAAYMNQ
MLVGVTTRGSGKRAALPMSLVAGKTGTSQAYRDAWFVGFTGNYTGAVWMGNDDFSSMN
RAFGGVIPAMIWHRIMLYAHQNTILQPLYGVKNSILPYQLPINPSNDNSYIIPKSPQI
LSPATLNAIRSINKDLQKLPNMTLSNTKTIFPSTDAI"
misc_feature complement(417175..417648)
/gene="pbp"
/locus_tag="BARCL_0382"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(416038..417606)
/gene="pbp"
/locus_tag="BARCL_0382"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:211713"
misc_feature complement(416056..416865)
/gene="pbp"
/locus_tag="BARCL_0382"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
gene 418310..418543
/locus_tag="BARCL_0383"
/db_xref="GeneID:10138377"
CDS 418310..418543
/locus_tag="BARCL_0383"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158650.1"
/db_xref="GI:319898557"
/db_xref="GeneID:10138377"
/translation="MKKVFFFAMFISLIGFDSVLAADCVEVGKKIAVQQGGTLTRSTP
SIRDDKNMCVVVIVIPAHNGNKLRRVEVVVAAD"
gene 418562..419230
/gene="feuP"
/locus_tag="BARCL_0384"
/db_xref="GeneID:10137458"
CDS 418562..419230
/gene="feuP"
/locus_tag="BARCL_0384"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="two-component system regulatory protein"
/protein_id="YP_004158651.1"
/db_xref="GI:319898558"
/db_xref="GeneID:10137458"
/translation="MRILIVEDDRDLNHQLAKAVKDAGYVSDSAFNGEDGYFLGSTEP
YDAVILDIGLSRMDGIQVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKP
FHLEEVMARLRALIRRSAGHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAY
LMHHCDKVVSRTELIEHLYDQDFNKDSNTIEVFIRRLRKKLGVDSIETVRGLGYRIKV
SGDK"
misc_feature 418562..419212
/gene="feuP"
/locus_tag="BARCL_0384"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 418571..418909
/gene="feuP"
/locus_tag="BARCL_0384"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(418580..418585,418712..418714,418736..418738,
418796..418798,418853..418855,418862..418867)
/gene="feuP"
/locus_tag="BARCL_0384"
/note="active site"
/db_xref="CDD:29071"
misc_feature 418712..418714
/gene="feuP"
/locus_tag="BARCL_0384"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(418721..418726,418730..418738)
/gene="feuP"
/locus_tag="BARCL_0384"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 418862..418870
/gene="feuP"
/locus_tag="BARCL_0384"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 418940..419209
/gene="feuP"
/locus_tag="BARCL_0384"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(419012..419014,419069..419074,419126..419128,
419135..419137,419159..419164,419183..419185,
419198..419200)
/gene="feuP"
/locus_tag="BARCL_0384"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 419227..420636
/gene="feuQ"
/locus_tag="BARCL_0385"
/db_xref="GeneID:10138117"
CDS 419227..420636
/gene="feuQ"
/locus_tag="BARCL_0385"
/EC_number="2.7.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_004158652.1"
/db_xref="GI:319898559"
/db_xref="GeneID:10138117"
/translation="MRVLKNSNRLKRLFFFIGKSLSLRVMILSTLWAIISLSSISAVS
ILFYQRSSEQSLERILSSQLYSLIAAVTVTSEGYLRGKPEFGDIRYSDPTSGWYWEVF
SVSPNLHGRLVSRSLGTKEIFSPSDADIPFNSQFFRSYRIKGIDGQNLKVIESDVVLD
NQNRVARFRLIGNIDEVYLQVKEFEQTLQFFLWSFGIGSVLINLTIIFFSFQPLKRIR
QTLNDIRAGRTDYVSTDLLSEVMPLAEEMNALINNNQRIIERFRTQVGNLAHSLKTPL
SVIINEVDNMTGEQALLLREQTKIMHSQINHYLQRARIAAQRDSVVYHTPVRETLDRL
VRVMKKLNPDKHIQFTMDVDDIIFSGEREDLEEIVGNLIENAAQWSRTKILIHCFLEE
SFEETAFFSIVIEDDGPGLTEEQIDEALKRGRRFDESKPGTGLGLAIVSDMVSEYDGS
FSLSRSELGGLYTKVVLPR"
misc_feature 419716..420633
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 420010..420177
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cl00080"
/db_xref="CDD:206823"
misc_feature 420319..420627
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(420337..420339,420349..420351,420358..420360,
420436..420438,420442..420444,420448..420450,
420454..420459,420526..420537,420583..420585,
420589..420591,420604..420609,420613..420615)
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 420349..420351
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(420448..420450,420454..420456,420526..420528,
420532..420534)
/gene="feuQ"
/locus_tag="BARCL_0385"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 420655..420843
/locus_tag="BARCL_0386"
/db_xref="GeneID:10138118"
CDS 420655..420843
/locus_tag="BARCL_0386"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158653.1"
/db_xref="GI:319898560"
/db_xref="GeneID:10138118"
/translation="MVDISKMISCDNENDITYNLGQKDKAFYRLRVASVCDEDVNENF
VFMVLYISEKFIIGFMMS"
gene 421627..422124
/locus_tag="BARCL_0387"
/db_xref="GeneID:10137459"
CDS 421627..422124
/locus_tag="BARCL_0387"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytochrome c-type biogenesis protein"
/protein_id="YP_004158654.1"
/db_xref="GI:319898561"
/db_xref="GeneID:10137459"
/translation="MKSYFFSELMGKDPKTLNRYERLVRLQVLFFRMPYDGNIADALA
VGYLEEGLFQEAVNTYLDALHLNGETAPRLVGYGLALVGYEGGIITQEAQDVFQKAVN
LAPNDFYPHLLLANAFHQAGRSSQAIQLLQNFLNKMPKVVKGRSRVEEMIIQLRGVSE
EQDLD"
misc_feature 421753..422046
/locus_tag="BARCL_0387"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(421756..421758,421792..421794,421804..421806,
421813..421815,421864..421866,421903..421905,
421915..421917,421924..421926,421969..421971,
422005..422007,422017..422019,422026..422028)
/locus_tag="BARCL_0387"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature order(421759..421764,421855..421860,421864..421869,
421876..421881,421960..421965,421972..421977,
421984..421989)
/locus_tag="BARCL_0387"
/note="binding surface"
/db_xref="CDD:29151"
gene 422268..422765
/gene="ccmE"
/locus_tag="BARCL_0388"
/db_xref="GeneID:10137460"
CDS 422268..422765
/gene="ccmE"
/locus_tag="BARCL_0388"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cytochrome c-type biogenesis protein CcmE"
/protein_id="YP_004158655.1"
/db_xref="GI:319898562"
/db_xref="GeneID:10137460"
/translation="MSSPPLKDFSSLELVLRKRKKNRLITILLCLFVIAIATGFVLYA
IRNTVNFFRMPSEITREDILTGRPLRLGGFVKKGTVEYSGKMQVTFFVTDGLKHEKVV
FTGILPDLFREGQGVIVEGYFNKQRLFIGTRILAKHDEIYMSREMADRVNKCQNMKRQ
FDCAS"
misc_feature 422313..422726
/gene="ccmE"
/locus_tag="BARCL_0388"
/note="cytochrome c-type biogenesis protein CcmE;
Reviewed; Region: PRK13254"
/db_xref="CDD:183920"
gene 422767..424740
/gene="cycK"
/locus_tag="BARCL_0389"
/db_xref="GeneID:10138018"
CDS 422767..424740
/gene="cycK"
/locus_tag="BARCL_0389"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="cytochrome C-type biogenesis protein"
/protein_id="YP_004158656.1"
/db_xref="GI:319898563"
/db_xref="GeneID:10138018"
/translation="MGHLFLAAAFAVSLLQAFLPTFGVLQQKRLLMQLAVPLAYVIFI
LLLLSFLIIVYAYIVSDFSVLNVVENSHSEKPMLYKIVGVWGNHEGSMLLWVLLLGFF
SILIALFSQQLPEQFKALVLGCQSWITSAFLLFILFISNPFIRVNPPVLQGKDLNPVL
QDISLVIHPPLLYLGYVGFAVCFSFSIAALIIGYVDKVWAYWIRPWVLLAWIFLTVGI
MVGSYWAYYELGWGGYWFWDPVENVSLMPWLSGTALLHSVIIFEKRNLLKSWTLFLAI
ITFSLSLMGTFLVRSGILMSIHSFAVDPARGKAILAILFFFTGGALLLFAIRMPILKK
RGFFHPISREGFIILNNLFLTTATATVLIGTLYPYFFEALTGQKISVGPVFFNLTFGP
LMMILLLFVPFGPMIAWKRGDFFAVFERLWCVFALACIACFITFYLDSLRDIFAALGV
GLAVFVFLGGLADLWGKSGYHKVPFLVRAKRFFRLPLSVFGAALAHMGLGVTLFGIIC
VATFGQERILIMQIRDTVTIAGKTICFDEVRNIAGSNYSAIQFGFKIYEDKNLISNII
ASKRFYSSQNISTTEVGIQSHGFSQFYIAPGRINDQGLVVHIWWKPYVICIWFGAFMM
AVGGGFSLLSHWVRVGRLRWITFGFKNIVKGSR"
misc_feature 422824..424689
/gene="cycK"
/locus_tag="BARCL_0389"
/note="Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones]; Region: CcmF;
COG1138"
/db_xref="CDD:31333"
gene 424737..425168
/gene="ccmH"
/locus_tag="BARCL_0390"
/db_xref="GeneID:10138049"
CDS 424737..425168
/gene="ccmH"
/locus_tag="BARCL_0390"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Cytochrome c-type biogenesis protein CcmH"
/protein_id="YP_004158657.1"
/db_xref="GI:319898564"
/db_xref="GeneID:10138049"
/translation="MRRLFFWTFTFFVLIFSMQLVRGVEPDEILMDSVLEARARDISS
YLRCPVCQNQSIDDSDTSSARDLRLLVRERLKAGDNDQQVINFLVERYGEFILLTPPF
NKMTWLLWLSPLIIIIIGLGFILFRIRWISRKTFITFDANE"
misc_feature 424773..>425078
/gene="ccmH"
/locus_tag="BARCL_0390"
/note="Cytochrome C biogenesis protein; Region: CcmH;
pfam03918"
/db_xref="CDD:190794"
gene complement(425360..425488)
/locus_tag="BARCL_0391"
/db_xref="GeneID:10138019"
CDS complement(425360..425488)
/locus_tag="BARCL_0391"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158658.1"
/db_xref="GI:319898565"
/db_xref="GeneID:10138019"
/translation="MVVVTQKFDPLKNIVLAKNTEQLTVVNIVRKFDLTIFYAPIQ"
gene 425382..426887
/gene="htrA"
/locus_tag="BARCL_0392"
/db_xref="GeneID:10137461"
CDS 425382..426887
/gene="htrA"
/locus_tag="BARCL_0392"
/EC_number="3.4.21.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="serine protease"
/protein_id="YP_004158659.1"
/db_xref="GI:319898566"
/db_xref="GeneID:10137461"
/translation="MVKSNFRTMLTTVSCSVFLASTMFFSGSNFWVTTTNANPVFVPS
VQQQGFADVVSKVKPAVVSVQVKSNAKKEERFFSNFFSSPGIDQLPDQHPLKRFFKDF
YNHTLPNNKPLNRSRKFRPIAFGSGFFISSDGYIVTNHHVIADGTSYSIILDDGAELE
AKLIGADPRTDLAVLKVNDKRKFPYVDFADDSTIHVGDWVVAVGNPFGLGGTVTAGIV
SARGRDIGAGVYDDFIQIDAAVNRGNSGGPTFNLNGQVVGINTAIFSPSGGNVGIAFA
IPSATAKQVVKQLMEKGSVRRGWIGVQIQPVTKEISDSIGLKEAKGALITDPLKGPAA
KAGIKAGDVIIAVNGEKINDARDLAKRIANTTPGETVTLGIWRSGKEESIKVKLDTMP
ADEGKRETSKYSSEHGNLDETLEDYGLIVAPSDDGVGLVVTDVDSDADAADRGIRSGD
VIVTVNNRSVKKASDIIDAIKDAKKLGRNAILLQVRTNDQNRFIALPILKK"
misc_feature 425673..426869
/gene="htrA"
/locus_tag="BARCL_0392"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature 425754..426158
/gene="htrA"
/locus_tag="BARCL_0392"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 426273..426539
/gene="htrA"
/locus_tag="BARCL_0392"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(426276..426287,426291..426293,426441..426446,
426453..426458)
/gene="htrA"
/locus_tag="BARCL_0392"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature <426714..426869
/gene="htrA"
/locus_tag="BARCL_0392"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene 426966..427652
/locus_tag="BARCL_0393"
/db_xref="GeneID:10138228"
CDS 426966..427652
/locus_tag="BARCL_0393"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_004158660.1"
/db_xref="GI:319898567"
/db_xref="GeneID:10138228"
/translation="MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETID
YDVMVVDRMLPHRDGLSIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKP
YAFSELLARVEVLQRRKNPKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLE
YLMRYSGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAG
YMLKAPDKKI"
misc_feature 426966..427640
/locus_tag="BARCL_0393"
/note="DNA-binding transcriptional activator CusR;
Provisional; Region: PRK09836"
/db_xref="CDD:182102"
misc_feature 426975..427310
/locus_tag="BARCL_0393"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(426984..426989,427116..427118,427140..427142,
427200..427202,427257..427259,427266..427271)
/locus_tag="BARCL_0393"
/note="active site"
/db_xref="CDD:29071"
misc_feature 427116..427118
/locus_tag="BARCL_0393"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(427125..427130,427134..427142)
/locus_tag="BARCL_0393"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 427266..427274
/locus_tag="BARCL_0393"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 427353..427628
/locus_tag="BARCL_0393"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(427419..427421,427476..427481,427533..427535,
427542..427544,427566..427571,427602..427604,
427617..427619)
/locus_tag="BARCL_0393"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 427649..429040
/locus_tag="BARCL_0394"
/db_xref="GeneID:10137462"
CDS 427649..429040
/locus_tag="BARCL_0394"
/EC_number="2.7.3.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="YP_004158661.1"
/db_xref="GI:319898568"
/db_xref="GeneID:10137462"
/translation="MNRLINMMRTTALRLSALYILLFGLVAAGLSLYMTAFAISLLTD
QTEQALREELRNIESAYNYGGLPLLMRTIDYRSRQPGAFLYLVTDPTGRVLTGNVAHI
EPGLLQHDGFLSHSFLYSRFGENGQINELNKHRALAVIIDLPNAMKLLVGRDLDEPER
FVTVIRKAVMIALAAMVGGALLIWFFIGRRALQRIDHVTAASQRLMNGDFSGRLPVSG
AGDEFDRLSANLNVMLDRIEELNTGLRQVSDNIAHDLKTPLTRLRNRAEEALLGKKTE
FEYRQVLDDVIAESDYLIRTFSAILMISRIEAGSLIENLEIINIKLILEDAVEFYEPF
AEEASVLLRLGHIFDKKLKLNRELITQSIFNLIDNAIKYASIGEKKAEVFLSMECDGE
RLLVVVSDNGPGIAEDKREKVTERFVRLEESRTQPGFGIGLSIAKAVMKLHGGELLLE
NANPGLRAVLLFP"
misc_feature 427673..429037
/locus_tag="BARCL_0394"
/note="heavy metal sensor kinase; Region: cztS_silS_copS;
TIGR01386"
/db_xref="CDD:162333"
misc_feature 428222..428365
/locus_tag="BARCL_0394"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(428222..428224,428231..428236,428240..428245,
428252..428257,428261..428263,428312..428317,
428321..428326,428333..428338,428342..428347,
428354..428359)
/locus_tag="BARCL_0394"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 428378..428563
/locus_tag="BARCL_0394"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(428387..428389,428399..428401,428411..428413,
428420..428422,428432..428434,428441..428443,
428492..428494,428504..428506,428513..428515,
428525..428527,428534..428536,428546..428548)
/locus_tag="BARCL_0394"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 428405..428407
/locus_tag="BARCL_0394"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 428723..429013
/locus_tag="BARCL_0394"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(428741..428743,428753..428755,428762..428764,
428840..428842,428846..428848,428852..428854,
428858..428863,428936..428947,428993..428995,
428999..429001)
/locus_tag="BARCL_0394"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 428753..428755
/locus_tag="BARCL_0394"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(428852..428854,428858..428860,428936..428938,
428942..428944)
/locus_tag="BARCL_0394"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 429142..432069
/gene="glnE"
/locus_tag="BARCL_0395"
/db_xref="GeneID:10137463"
CDS 429142..432069
/gene="glnE"
/locus_tag="BARCL_0395"
/EC_number="2.7.7.42"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="glutamate-ammonia-ligase adenylyltransferase"
/protein_id="YP_004158662.1"
/db_xref="GI:319898569"
/db_xref="GeneID:10137463"
/translation="MKTAFLKTRLVPLRPLDESGSQWLKDIEEQARKENLEPLVSYIV
NGGEQVDFISAVMTLSPFLRGVLIANPSYLSPLLTVDIETRLSEIIEDIAATDRIEMI
HETSLMAALRRKKREAHTLIALADLGRVFNYKVSCAWLTRLGEAALGAALRFLLREAH
DCGKIGLSSRDTPEKDCGLIVLGMGKFGAEELNYSSDIDLIILIDEMSPYIGNLYEKS
IDIFSKMVRRLIRIIQERTAEGYVFRLDLRLRPDPGSTPLALPVRTALRYYEGRGQNW
ERAAMIKARPVAGDINAGFSFLKELSPYIWRKYLDYAAIADIHSIKRQIHACKNYGQI
AAYGHNIKLGRGGIREIEFFVQTQQLIAGGRLPQLRGRETVKMLAELCNLGWIGEEIK
DSLLKSYAFLRNVEHRIQMLADEQTHILPEEVSRFTSVAYLMGYQESSCFIRDLLETL
LIVEEHYAALFEHEQELGLEIGNLVFTGEEDDPETLITLNRLGFERASDICRIMRTLH
CGRYRATQSAEARERLTELTPALLKAFGATKRADEAMLRFDSFLQGLPSGIQLFSLLQ
SNPPLLDMLVCIMGAAPRLAEIITRTPHVFDGMLDPAIFSELPTKNYLENRLKYFLED
VTTYEEILDHLRIFAGEQRFLIGIRLLNGTIKGDRAGFAFTALADLMIAKTLTAVQEE
FFRHHGHIKGGRIGILGMGKLGSYELTAGSDVDLILLYEYDEDIEMSDGEKPLHVSQY
YTRLTQRFVSALSASTNQGVLYTVDLRLRPLGNKGPIAVPFQVFTKYQRQEAWIWEHL
ALTRARGVAGDTDFLQKLENEIRAIIALPCDKKRVAKEVREMRALIEKEKPPANRWDL
KTVPGGIMDIEFIAQFALITHVIDFQIGTTTADILSHLPPKFLRQSFISDLHYAYCIY
TNLSQIIRLCLNDSLNSDDMPPGLSDLLLRSIGEPDLPRVEKLIEEIGQSVRTIFTKV
MEI"
misc_feature 429142..432063
/gene="glnE"
/locus_tag="BARCL_0395"
/note="bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional;
Region: PRK14108"
/db_xref="CDD:184512"
misc_feature <429667..430050
/gene="glnE"
/locus_tag="BARCL_0395"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(429730..429732,429736..429738,429877..429879)
/gene="glnE"
/locus_tag="BARCL_0395"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature 430102..430524
/gene="glnE"
/locus_tag="BARCL_0395"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:149407"
misc_feature 431077..431610
/gene="glnE"
/locus_tag="BARCL_0395"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(431278..431280,431284..431286,431434..431436)
/gene="glnE"
/locus_tag="BARCL_0395"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
gene 432541..432732
/locus_tag="BARCL_0396"
/db_xref="GeneID:10138181"
CDS 432541..432732
/locus_tag="BARCL_0396"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158663.1"
/db_xref="GI:319898570"
/db_xref="GeneID:10138181"
/translation="MDVCVMCIQIFSKENKFIIGGKIEKVNVTTLYAIPAFTSLMMYV
QYIRYIYYFNIQRLLYVIK"
gene 432997..433560
/locus_tag="BARCL_0397"
/db_xref="GeneID:10137464"
CDS 432997..433560
/locus_tag="BARCL_0397"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Methyltransferase"
/protein_id="YP_004158664.1"
/db_xref="GI:319898571"
/db_xref="GeneID:10137464"
/translation="MDLTMLQDVDIMKRPKNKSRQDAVVVTVRETSIGSLLVAKSHKG
ICYIALGDEIGQLLQELRMRFTNIKQNINNSVLNQEMACIIAMVETPKLMKHHNLPLD
INGTAFQKKIWAVLCEIQCGETVSYEELAKRIDMPKAYRAVANACASNELALVIPCHR
VIRKNSTLSGYRWGTQRKQILLQREQY"
misc_feature 433084..433551
/locus_tag="BARCL_0397"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:30699"
misc_feature 433318..433554
/locus_tag="BARCL_0397"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature order(433318..433323,433375..433380,433402..433404,
433411..433413,433417..433422,433426..433428,
433435..433440,433444..433446,433468..433470,
433483..433485,433504..433506)
/locus_tag="BARCL_0397"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature order(433375..433377,433468..433473,433477..433479,
433549..433551)
/locus_tag="BARCL_0397"
/note="active site"
/db_xref="CDD:119438"
gene complement(433565..435874)
/locus_tag="BARCL_0398"
/db_xref="GeneID:10137465"
CDS complement(433565..435874)
/locus_tag="BARCL_0398"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_004158665.1"
/db_xref="GI:319898572"
/db_xref="GeneID:10137465"
/translation="MAKLDAYNAATRTHSDSKPSASNRKVGISRISNSTYQKLLFIEP
WLRRSIPFAIIISLIVLTTIRFASLYNWRHTIDKNARSTLSLLSSYIVNKIDRDLLAS
TQQKKAAVLSPNHLQNILINFHHHNFTSINPTIAIIDQNRNVLASSSSDIILEKPLQD
FIAENIDLWSLKKNTGIIKITIGKEPALASFSQIDNSQYRVFISATKKNIYMEWQKKF
SLNITLLIGTASIILVLLYAYYNQIIRARNTDLTSEKIQNRTDMAMMRGRCGLWDWNM
ANGRVYWSRAMYEMLGYAPQNALLSISQITAIIDPKDANFFEIAQELMSGAKKHIDIN
VPMRHAEGYYVWMRIRAEVTDEEEPHLVGISFDISEQRQFAEQTAQADLRIRDAIENI
SESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKVDEA
GNLTSIRQTADGYWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL
KRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPLNAILGFSE
IMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEP
IISETIRTLTPQAQAKKISLTTNIEPKLHADVDCRAMKQIFLNLISNAVKFTPSGGSI
DIRAFQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAISRSL
LELHKGKLEITSKEAKGTIVTITMPIQQN"
misc_feature complement(434783..435067)
/locus_tag="BARCL_0398"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(434783..435037)
/locus_tag="BARCL_0398"
/note="PAS fold; Region: PAS_3; pfam08447"
/db_xref="CDD:203948"
misc_feature complement(order(434849..434851,434864..434866,
434942..434953,434996..434998,435014..435016,
435026..435028))
/locus_tag="BARCL_0398"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(434822..434824,434828..434830,
434912..434917,434924..434926,434948..434950,
434960..434962))
/locus_tag="BARCL_0398"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(434399..434710)
/locus_tag="BARCL_0398"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature complement(433571..>434407)
/locus_tag="BARCL_0398"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(434054..434239)
/locus_tag="BARCL_0398"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(434069..434071,434081..434083,
434090..434092,434102..434104,434111..434113,
434123..434125,434183..434185,434192..434194,
434204..434206,434213..434215,434225..434227,
434237..434239))
/locus_tag="BARCL_0398"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(434219..434221)
/locus_tag="BARCL_0398"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(433586..433894)
/locus_tag="BARCL_0398"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(433595..433597,433601..433606,
433619..433621,433625..433627,433673..433684,
433763..433768,433772..433774,433778..433780,
433784..433786,433853..433855,433862..433864,
433874..433876))
/locus_tag="BARCL_0398"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(433862..433864)
/locus_tag="BARCL_0398"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(433676..433678,433682..433684,
433766..433768,433772..433774))
/locus_tag="BARCL_0398"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(436173..438800)
/gene="pepN"
/locus_tag="BARCL_0399"
/db_xref="GeneID:10137466"
CDS complement(436173..438800)
/gene="pepN"
/locus_tag="BARCL_0399"
/EC_number="3.4.11.2"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="aminopeptidase"
/protein_id="YP_004158666.1"
/db_xref="GI:319898573"
/db_xref="GeneID:10137466"
/translation="MKQETIPVYRLEDYQPTPYAIPKTQLDFCLEPTKTVVKATLSIE
PRKNIKELTPLVLSGDELTLVSVTINGKELAKNAYKSTPSNLEITAPPMTPFTLQLVT
KLNPESNRQLMGLYLSNGVYCTQCEAEGFRRITYFYDRPDILSTYSVKIEADSQTTPI
LLSNGNLIETGTLENNRHFAIWEDPYPKPSYLFALVGGNLDQLEDHFITASGRHIKLG
IYVEKGKTKQATYAMDALKRSMRWDEQCFGREYDLDVFNIVAVSDFNMGAMENKGLNI
FNDKYVLADPETATDKDYRNIERIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDQ
EFSADQNIQSLQRIENIKMLKANQFPEDSGPLAHPVRPRQYSQINNFYTTTIYEKGAE
IVRMVHTILGPSLFRKGMDLYFQRHDGQACTIEDFIACFAEVADQDFSQFMLWYEQAG
TPHVEIDSHYNDGILTIHAKQHIPPTPQQNNKKPMLIPIAFGLLGHEGKPLNYEIDTT
IQSDVMLLSKETQTFQLKGLREKPVLSLLRDFSAPITLQTPFNENELIFLAQNDSNQI
NRWQSLNTLITQALIGAIQDKTLEKATMPSNLLKLIEIIIKDANLEPEFRAFCLNLPS
ESELAHAIGNNIDPDRIYYVRNQFLASIAHTHQELLKEFYVQMQVKEPYSPNAEQTGK
RALRNIILDYLSIAEANPKRAATQYAVSDNMTDRIASITILVQRFNKSEQAQEALNDF
ENRYHHDPLVMDKWFSIQAMVAGASTLDYVQKLTKHRLFSKDNPNRVRALIGAFASGN
QTGFNRTDGASYHFLCQTILEIDPKNSQLASRLLTIMRSWRQLEPIRQKKLESALKTI
AAAPKLSSDVKDIINRTLA"
misc_feature complement(436176..438800)
/gene="pepN"
/locus_tag="BARCL_0399"
/note="aminopeptidase N; Provisional; Region: pepN;
PRK14015"
/db_xref="CDD:184453"
misc_feature complement(436179..438764)
/gene="pepN"
/locus_tag="BARCL_0399"
/note="Peptidase M1 family containing Aminopeptidase N;
Region: M1_APN_1; cd09600"
/db_xref="CDD:189007"
misc_feature complement(order(436323..436325,437640..437642,
437655..437657,437664..437666,437823..437828,
437880..437882,437889..437894,437901..437906,
437991..438005,438417..438422,438426..438428))
/gene="pepN"
/locus_tag="BARCL_0399"
/note="active site"
/db_xref="CDD:189007"
misc_feature complement(order(437823..437825,437880..437882,
437892..437894))
/gene="pepN"
/locus_tag="BARCL_0399"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189007"
gene complement(438885..439736)
/locus_tag="BARCL_0400"
/db_xref="GeneID:10138387"
CDS complement(438885..439736)
/locus_tag="BARCL_0400"
/EC_number="2.7.7.7"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phage SPO1 DNA polymerase-related protein"
/protein_id="YP_004158667.1"
/db_xref="GI:319898574"
/db_xref="GeneID:10138387"
/translation="MDQLKAKSEMSKKIKDLILSEDLLNFYKESGVDTALTDVPIDRF
NQPTTPLEPQLNQAYNPPHHKQISPTIKPYALPPYNPNNTQPALSAIEIAKNAQTLDE
LKSALLSFNDCSLKLTAKNTCFSDGTAGSPLMLIGEAPGREEDIQGIPFVGKAGILLN
KILASIGLTRQNVYIANTIPWRPPGNRTPTPREVALCRPFIERQIFLAKPRILIALGG
TATQFFTGVQSSIIRIRGKWLTYENENLKIPVMPTFHPAYLLRTPSQKKLTWIDFLEV
KNRLNNL"
misc_feature complement(438906..439400)
/locus_tag="BARCL_0400"
/note="Family 4 Uracil-DNA glycosylase (UDG), found
exclusively in thermophilic organisms; Region:
UDG_F4_TTUDGA_like; cd10030"
/db_xref="CDD:198428"
misc_feature complement(order(439137..439139,439146..439151,
439194..439202,439380..439382,439389..439394,
439398..439400))
/locus_tag="BARCL_0400"
/note="Fe-S cluster binding site [ion binding]; other
site"
/db_xref="CDD:198428"
misc_feature complement(order(438972..438974,439206..439208,
439284..439289,439305..439307,439320..439328))
/locus_tag="BARCL_0400"
/note="active site"
/db_xref="CDD:198428"
gene complement(439836..440585)
/gene="thiD"
/locus_tag="BARCL_0401"
/db_xref="GeneID:10137467"
CDS complement(439836..440585)
/gene="thiD"
/locus_tag="BARCL_0401"
/EC_number="2.7.4.7"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphomethylpyrimidine kinase"
/protein_id="YP_004158668.1"
/db_xref="GI:319898575"
/db_xref="GeneID:10137467"
/translation="MSSILIVAGTDPTGGAGIVRDIETATYFQTKASLAITAVNVQDN
NHVAEIIPMSRETIAAQMRVALKNNSIHAIKIGMTGTQAIIEGICDILKDYHHIPTVL
DPVLIASSGGQLTTEKIIDIMLNKLFPHIDLLTPNMVELALLSQSPLASNHEEAIQQA
QKLLSFGPRHILIKGGHIEGNFATDSLIDKTEVINISSPRLKGTMRGTGCILSSAIAA
HLALKQSMIEAIKNAKAYTYTLLLKHCQKNL"
misc_feature complement(439863..440576)
/gene="thiD"
/locus_tag="BARCL_0401"
/note="4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of vitamin
B1. The first step is the phosphorylation of...; Region:
HMPP_kinase; cd01169"
/db_xref="CDD:29353"
misc_feature complement(order(439956..439958,440352..440354,
440460..440462,440523..440525,440559..440561))
/gene="thiD"
/locus_tag="BARCL_0401"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29353"
misc_feature complement(order(440391..440396,440406..440408,
440415..440417,440424..440429,440433..440435,
440439..440444,440457..440471,440478..440480,
440484..440501,440508..440510,440517..440522,
440529..440531,440541..440543,440547..440552,
440556..440558))
/gene="thiD"
/locus_tag="BARCL_0401"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29353"
misc_feature complement(order(439959..439961,439965..439967,
440064..440066,440166..440168,440277..440279))
/gene="thiD"
/locus_tag="BARCL_0401"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29353"
gene complement(440585..441190)
/gene="thiE"
/locus_tag="BARCL_0402"
/db_xref="GeneID:10138601"
CDS complement(440585..441190)
/gene="thiE"
/locus_tag="BARCL_0402"
/EC_number="2.5.1.3"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase"
/protein_id="YP_004158669.1"
/db_xref="GI:319898576"
/db_xref="GeneID:10138601"
/translation="MKLDPFYLIVDSADWVERLIPFGVKLIQLRIKDKDTETIIQHIK
RAKNICDKFKAQLIINDYWKIAIDEKCDFIHLGQEDLKNTDISAIRKSGIKFGLSTHD
EHELDISLSISPEYIALGPIYPTILKKMKWAPQGLEKIKQWRKRIDSLPLVGIGGLTP
ERAIDVLKVGANSAAVVTDIILNKKPEKRVQQWIKVTQAWR"
misc_feature complement(440606..441175)
/gene="thiE"
/locus_tag="BARCL_0402"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature complement(order(440657..440668,440720..440722,
440732..440734,440810..440812,440816..440818,
440837..440839,440843..440845,440894..440896,
440966..440968,441101..441103,441107..441109,
441164..441166,441170..441172))
/gene="thiE"
/locus_tag="BARCL_0402"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature complement(order(440657..440662,440720..440722,
440807..440812,440816..440818,440894..440896,
440951..440953,441008..441013,441095..441097,
441101..441103,441107..441109))
/gene="thiE"
/locus_tag="BARCL_0402"
/note="active site"
/db_xref="CDD:73367"
misc_feature complement(order(440807..440809,440894..440896,
440951..440953,440960..440962,441008..441013,
441095..441097,441101..441103))
/gene="thiE"
/locus_tag="BARCL_0402"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene complement(441187..441960)
/gene="thiG"
/locus_tag="BARCL_0403"
/db_xref="GeneID:10138605"
CDS complement(441187..441960)
/gene="thiG"
/locus_tag="BARCL_0403"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="thiamin biosynthesis protein"
/protein_id="YP_004158670.1"
/db_xref="GI:319898577"
/db_xref="GeneID:10138605"
/translation="MLNFYGREFSSRLLLGTAQYPSPEILRKAIHKSGTEIITVSLRR
ETAGGKQSGQFWQFLKELDITVLPNTAGCYTVKEAVTTAQLARDLFKTPWIKLEVIGN
PDTLQPNVFSLVETAQILNNEGFQIFAYTTDDLIVAEKLFEVGCRVIMPWCAPIGSAK
GPRDTDGLRSIRAYLPDLTLVIDAGIGRPSHATIAMELGYDAVLLNTAVAKAGDPVLM
AEAFSKAITSGRMGYKAGLLEARNVAVPSTPVIGKAIFS"
misc_feature complement(441211..441957)
/gene="thiG"
/locus_tag="BARCL_0403"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:73390"
misc_feature complement(order(441790..441792,441799..441801,
441838..441840))
/gene="thiG"
/locus_tag="BARCL_0403"
/note="ThiS interaction site; other site"
/db_xref="CDD:73390"
misc_feature complement(order(441412..441414,441667..441669,
441673..441675))
/gene="thiG"
/locus_tag="BARCL_0403"
/note="putative active site [active]"
/db_xref="CDD:73390"
misc_feature complement(order(441214..441216,441220..441228,
441232..441234,441238..441243,441247..441261,
441265..441270,441277..441279,441298..441300,
441307..441312,441319..441327,441340..441342,
441367..441372,441379..441381,441391..441399,
441442..441444,441454..441456,441472..441474,
441481..441489,441541..441546,441553..441561,
441565..441567,441634..441642,441649..441651,
441658..441660))
/gene="thiG"
/locus_tag="BARCL_0403"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73390"
gene complement(441965..442162)
/gene="thiS"
/locus_tag="BARCL_0404"
/db_xref="GeneID:10138607"
CDS complement(441965..442162)
/gene="thiS"
/locus_tag="BARCL_0404"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Thiamine biosynthesis protein ThiS"
/protein_id="YP_004158671.1"
/db_xref="GI:319898578"
/db_xref="GeneID:10138607"
/translation="MKISVNGEIIETKVTYLKLILDELGYEGNWLATAVNGEVVSIDE
RSQFVLHEGDRIEILTPMQGG"
misc_feature complement(441968..442159)
/gene="thiS"
/locus_tag="BARCL_0404"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature complement(order(441986..441994,442046..442048))
/gene="thiS"
/locus_tag="BARCL_0404"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene complement(442166..443116)
/gene="thiO"
/locus_tag="BARCL_0405"
/db_xref="GeneID:10138609"
CDS complement(442166..443116)
/gene="thiO"
/locus_tag="BARCL_0405"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis oxidoreductase"
/protein_id="YP_004158672.1"
/db_xref="GI:319898579"
/db_xref="GeneID:10138609"
/translation="MKNILIKGAGVGGLTVAFMLQQKGVPVTVSAPLHSPIGTASWYA
GGMLAPYCEKESSKQIVEDLGVQAMQWWSEILPEIVIQKGTLVVAPTRDIAELERFST
HTNNHKTIDNTEIANLEPDLSGRFNRALFYETEAHLDPRKALITLKEILIKNGACFVD
IGISEENFNIIIDATGTARLGKDKNIRGVRGEMLLVRSTDIKISRPIRLLHPRIPIYV
VPRQNNIFMIGATMIESDFSGAISARSMMEFLNAAYTLHPAFAEAEIIESGVGVRPCY
PNNLPYVHKHDNYIYINGFYRHGFLLSPEMAKQAIKLALE"
misc_feature complement(442178..443065)
/gene="thiO"
/locus_tag="BARCL_0405"
/note="glycine oxidase ThiO; Region: thiamin_ThiO;
TIGR02352"
/db_xref="CDD:162817"
gene complement(443113..444939)
/gene="thiC"
/locus_tag="BARCL_0406"
/db_xref="GeneID:10138608"
CDS complement(443113..444939)
/gene="thiC"
/locus_tag="BARCL_0406"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein"
/protein_id="YP_004158673.1"
/db_xref="GI:319898580"
/db_xref="GeneID:10138608"
/translation="MQKNTPSISFYPFPASRKIYQQSLLFPNVRVPLREISLTDSNHE
ETLKVYDTSGPYTDEDATIDITKGLPAISTPWLSERSDIESYPARLIKPADNGFTHDK
NLAPTFEQMRPVFRAKNGKAVTQMAYARAGIITAEMEYVAIRENEGLVAKDQQKMSGE
TFGASIPETYTAEFVRNEIACGRAIIPQNINHPECEPMIIGRNFRVKINANIGNSAVT
SSMAEEVEKMVWAIRWGADTVMDLSTGRNIHNIREWIIRNSPVPIGTVPIYQALEKVH
GIAENLTWDIFRDTLIEQAEQGVDYFTIHAGLRLPFIPLTINRITGIVSRGGSIIAKW
CLHHHKENFLYEHFDEICDIARMYDVSLSLGDGLRPGSLADANDEAQFAELKTLGELT
KIAWAKDVQIMIEGPGHVPMHKIKENMEKQLTLCHEAPFYTLGPLTTDIAPGYDHITS
AIGAAMIGWFGTAMLCYVTPKEHLGLPDKNDVKTGVITYKIAAHAADLAKGLPGVQLR
DNALSRARFDFRWRDQFNLSLDPDTARAFHDETMPKEAHKLVHFCSMCGPKFCSMRIS
HDIRDAATIRKKEGMIAMAEKYQKNGDLYIENAPSRKEVANS"
misc_feature complement(443149..444939)
/gene="thiC"
/locus_tag="BARCL_0406"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:181756"
misc_feature complement(444688..444906)
/gene="thiC"
/locus_tag="BARCL_0406"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:205844"
misc_feature complement(443230..444570)
/gene="thiC"
/locus_tag="BARCL_0406"
/note="ThiC family; Region: ThiC; pfam01964"
/db_xref="CDD:202065"
gene complement(445059..445214)
/locus_tag="BARCL_0407"
/db_xref="GeneID:10138600"
CDS complement(445059..445214)
/locus_tag="BARCL_0407"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158674.1"
/db_xref="GI:319898581"
/db_xref="GeneID:10138600"
/translation="MQLTLSAFQLIITAQINALTGSGVHIQITKDIFIDFLKIKFPEL
CHLSDVH"
gene complement(445542..446774)
/locus_tag="BARCL_0408"
/db_xref="GeneID:10137468"
CDS complement(445542..446774)
/locus_tag="BARCL_0408"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Omp43"
/protein_id="YP_004158675.1"
/db_xref="GI:319898582"
/db_xref="GeneID:10137468"
/translation="MNIKTFLLSSTLVLSGILEAQAASAITAKPEPIEYVRACDAYGS
GYFYIPGTETCIRVSGNVRADVAGGDNIDAKTDADLANSQKTYRTTSRLTLIFQAASE
TELGTLRSYAAIRSQWSKGKDSSGGQLRAAYIELGGFRVGLDETIFNSWTGGYGKVMN
DDSIAPAGDIRTNVISYTFNADSGFSAIIGVELGNASGPSLKTSAGENINYYYIDKDS
KIVRVDDTDLPSKQTKDYNPNILFGMKFMQKWGGVSTVIAYDAYYKKWAGKARVDFNV
NNNLNLWAMGGYKNNLDYYIVDTVGTNNVLSRQNTTIYANWGGKWAAWGGATYKITPK
ANLNAQVSYSAIKTFATSVNVAYKLVPGFIITPEITYISWKDDRTFKSKENNIKSYNN
ALNGRSALQSMIRFQRSF"
misc_feature complement(445602..446699)
/locus_tag="BARCL_0408"
/note="Porin subfamily; Region: Porin_2; pfam02530"
/db_xref="CDD:190338"
gene 447071..447162
/locus_tag="BARCL_t05"
/db_xref="GeneID:10137469"
tRNA 447071..447162
/locus_tag="BARCL_t05"
/product="tRNA-Ser"
/db_xref="GeneID:10137469"
gene 447072..447162
/locus_tag="BARCL_tRNA5"
/db_xref="GeneID:10138718"
tRNA 447072..447162
/locus_tag="BARCL_tRNA5"
/product="tRNA-Ser"
/inference="profile:tRNAscan:1.23"
/db_xref="GeneID:10138718"
gene 447372..447515
/locus_tag="BARCL_0409"
/db_xref="GeneID:10137947"
CDS 447372..447515
/locus_tag="BARCL_0409"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158676.1"
/db_xref="GI:319898583"
/db_xref="GeneID:10137947"
/translation="MPNCSTEYRNSYNKKTILFEKVYWKALTFGLNQAFSQKKMLYYM
CYK"
gene complement(447506..448300)
/gene="hmuV"
/locus_tag="BARCL_0410"
/db_xref="GeneID:10137470"
CDS complement(447506..448300)
/gene="hmuV"
/locus_tag="BARCL_0410"
/EC_number="3.6.3.34"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="ATP-binding protein of hemin ABC transporter"
/protein_id="YP_004158677.1"
/db_xref="GI:319898584"
/db_xref="GeneID:10137470"
/translation="MIEAINICIQRGKTYILNHVHLQAKSGALTIIIGPNGSGKSTFI
KALSGEIPYNGKMTLNGHDIKKTQANKMAMIRAVLPQSTTLAFPFLVHEVVRLGLSIN
QVNITEAQLKSLPQKALKRVGLADYGNRYYHQLSGGEQARVQLARVLCQIWDPVYNGV
ARWLILDEPIANLDIQHQLIVMNIIKNFSHCGGGVLAVLHDLNLAAHYADKMILLKQG
KIYCEGDASTVLTTENLRKAYHCSLRVSEIPKKNIPFILPQTASHL"
misc_feature complement(447524..448300)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="hemin importer ATP-binding subunit; Provisional;
Region: hmuV; PRK13548"
/db_xref="CDD:184133"
misc_feature complement(447629..448294)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(448178..448201)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(447701..447703,447797..447802,
448058..448060,448175..448183,448187..448192))
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(448058..448069)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(447869..447898)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(447797..447814)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(447779..447790)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(447695..447715)
/gene="hmuV"
/locus_tag="BARCL_0410"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
gene complement(448297..449394)
/gene="hmuU"
/locus_tag="BARCL_0411"
/db_xref="GeneID:10138223"
CDS complement(448297..449394)
/gene="hmuU"
/locus_tag="BARCL_0411"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="hemin ABC transporter, permease protein"
/protein_id="YP_004158678.1"
/db_xref="GI:319898585"
/db_xref="GeneID:10138223"
/translation="MVENISTAHISEIIENTKEKPTNRGKIALLSLIAILIFSIFSAL
FSGASNASLINLIHVILTQDFSVGSKTYDYLILIDIRLPRIILSSLVGATLAVSGVIM
QGLFRNPLADPGIVGVSAGASLGAVLAIVIGISFPPFFIPLLESYKIVIGAFLGGLLS
TIVLYVIATRQSFTSIATMLLAGIALSALSSAIVGSLIFTANDQQLRDITFWNLGSLS
GATWLKVGLILPIVWIGLLFSPFLSHALNALALGEAIAQHIGFHIQRIKNIAVLLVAL
MCGGAVAVSGGIGFIGIVVPHILRLLIGPDHRYLIPCSALLGATLLTFSDTFARCIIA
PAELPIGIVTALFGAPFFLWILIHQRGINFS"
misc_feature complement(448315..>449124)
/gene="hmuU"
/locus_tag="BARCL_0411"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(448327..449124)
/gene="hmuU"
/locus_tag="BARCL_0411"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(448474..448476,448495..448497,
448618..448626,448630..448647,448651..448656,
448660..448668,448672..448677,449068..449076,
449086..449088))
/gene="hmuU"
/locus_tag="BARCL_0411"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(448327..448329,448336..448341,
448348..448350,448357..448362,448369..448371,
448525..448527,448753..448755,448762..448767,
448804..448806,448810..448815,448822..448824,
448831..448836,448843..448848,448855..448860,
448864..448866,449050..449052,449065..449067,
449071..449073))
/gene="hmuU"
/locus_tag="BARCL_0411"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(448378..448380,448405..448407,
448537..448539,448549..448551,448723..448725,
448804..448806))
/gene="hmuU"
/locus_tag="BARCL_0411"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(449401..450252)
/gene="hmuT"
/locus_tag="BARCL_0412"
/db_xref="GeneID:10138222"
CDS complement(449401..450252)
/gene="hmuT"
/locus_tag="BARCL_0412"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="periplasmic hemin-binding protein"
/protein_id="YP_004158679.1"
/db_xref="GI:319898586"
/db_xref="GeneID:10138222"
/translation="MFSFTCFSRQVIAEPTTSFPENARIVSVGGALTETVYALGAQDQ
LVARDSTSIYPQAALKLPELGYMRNLSPESILSLSPEGILLIEGSGPPSTIDVLKKTS
IPLVIIPENFSRESVIEKIRLVGKALHREVQATELIEKLNRNFMNNDKLLTKITNPKR
VLFIFSVQNGSVMVSGTDTAADSMIKLSGGINAISDYKGYKLLNNESLLKSNPDFILF
VNHSGNSTKIDTILAIPAIQGTPAAQNHAIKQIDAMYFLGFGPRTADASKELINMLYS
TEQNGKS"
misc_feature complement(449488..450183)
/gene="hmuT"
/locus_tag="BARCL_0412"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:199270"
misc_feature complement(449494..450180)
/gene="hmuT"
/locus_tag="BARCL_0412"
/note="Periplasmic binding protein; Region: Peripla_BP_2;
pfam01497"
/db_xref="CDD:144914"
misc_feature complement(order(449875..449877,449962..449964,
449971..449976))
/gene="hmuT"
/locus_tag="BARCL_0412"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene complement(450318..451361)
/gene="hmuS"
/locus_tag="BARCL_0413"
/db_xref="GeneID:10138221"
CDS complement(450318..451361)
/gene="hmuS"
/locus_tag="BARCL_0413"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3 : Function proposed based on presence of
conserved amino acid motif, structural feature or limited
homology"
/codon_start=1
/transl_table=11
/product="hemin-degrading protein"
/protein_id="YP_004158680.1"
/db_xref="GI:319898587"
/db_xref="GeneID:10138221"
/translation="MSYTAEMIIKLREEKKDMRNRDFATSIGISEAEFIAAYRTIGKA
KRLKVDIPILLENAPKVETVMALTRNEYAVHEKTGCFEKIILNEYIPMTFGEIDLRIF
PKKWEFGFEYEMMVFGKPTKSLQFFDQYGTAIFKVYSKDMTNIEQWNALIEKLLHEDQ
SSALDILPTPAPIQYDTKNLDIEKFRDRWRKMTDVHQLHEITAEFKIGRHDAVKHAGN
EFTDELSLESIEIMLNKAVQQEIPIMCFVGNKGCIQIFSGQIKNIKQMGPWLNILDEK
FHLHMLVSGVNKVWHVRKPISEGYVSSLEVFDQNGEMIVQFFGMRKEGQKECENWRSL
LNDLPLYQEIKVT"
misc_feature complement(450345..451346)
/gene="hmuS"
/locus_tag="BARCL_0413"
/note="Putative heme degradation protein [Inorganic ion
transport and metabolism]; Region: HemS; COG3720"
/db_xref="CDD:33515"
misc_feature complement(450897..451280)
/gene="hmuS"
/locus_tag="BARCL_0413"
/note="Haemin-degrading HemS.ChuX domain; Region: HemS;
pfam05171"
/db_xref="CDD:147384"
misc_feature complement(450348..450746)
/gene="hmuS"
/locus_tag="BARCL_0413"
/note="Haemin-degrading HemS.ChuX domain; Region: HemS;
pfam05171"
/db_xref="CDD:147384"
gene complement(451620..452786)
/gene="hutA"
/locus_tag="BARCL_0414"
/pseudo
/db_xref="GeneID:10138220"
misc_feature complement(451620..452786)
/gene="hutA"
/locus_tag="BARCL_0414"
/inference="ab initio prediction:AMIGene:2.0"
/note="outer membrane heme receptor"
/pseudo
/db_xref="PSEUDO:CBI76095.1"
gene complement(452837..453760)
/gene="hutA"
/locus_tag="BARCL_0415"
/pseudo
/db_xref="GeneID:10138231"
misc_feature complement(452837..453760)
/gene="hutA"
/locus_tag="BARCL_0415"
/inference="ab initio prediction:AMIGene:2.0"
/note="outer membrane heme receptor"
/pseudo
/db_xref="PSEUDO:CBI76096.1"
gene 454082..454840
/gene="tonB"
/locus_tag="BARCL_0416"
/db_xref="GeneID:10138232"
CDS 454082..454840
/gene="tonB"
/locus_tag="BARCL_0416"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="TonB protein"
/protein_id="YP_004158681.1"
/db_xref="GI:319898588"
/db_xref="GeneID:10138232"
/translation="MKGASIWRISALWIGAFGGALALHIGIGAQLYFKSIYMNDIVFP
PMVMLLVEPEIMHPNVNADSEILELGVLKQEEILKSELSKVHPEEHEIAEELESIVEK
SNFTVLKPLEKSSPSKINRKVFIQKQLSTLNVTAKKINVKKAHSFTASRDNNTALFDN
ALSGQWLAKVQAQLEKQKNYIVGQRISSVQGVVQLEFKVSEQGDIFASRIMLSSGNQE
LDWLAMMTLKRVDIFPPPPREMVDKTIRVSLIFS"
misc_feature <454406..454834
/gene="tonB"
/locus_tag="BARCL_0416"
/note="Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane];
Region: TonB; COG0810"
/db_xref="CDD:31152"
misc_feature 454646..454837
/gene="tonB"
/locus_tag="BARCL_0416"
/note="TonB family C-terminal domain; Region: tonB_Cterm;
TIGR01352"
/db_xref="CDD:211644"
gene 455553..456191
/gene="rnhB"
/locus_tag="BARCL_0417"
/db_xref="GeneID:10138623"
CDS 455553..456191
/gene="rnhB"
/locus_tag="BARCL_0417"
/EC_number="3.1.26.4"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Ribonuclease HII"
/protein_id="YP_004158682.1"
/db_xref="GI:319898589"
/db_xref="GeneID:10138623"
/translation="MFNVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAV
VLDKDCIPEGVNDSKKLSSQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEA
MRRCISGLAISAHYALIDGRDVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMM
QYAGQVYQNYGLEKHVGYATAAHRAAIDKYGPIVRLHRYSFSPLKERYKDSI"
misc_feature 455625..456167
/gene="rnhB"
/locus_tag="BARCL_0417"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(455634..455645,455835..455843,455850..455852,
455910..455912,455952..455954,456009..456011)
/gene="rnhB"
/locus_tag="BARCL_0417"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(455634..455639,455910..455912,455967..455969)
/gene="rnhB"
/locus_tag="BARCL_0417"
/note="active site"
/db_xref="CDD:187695"
gene 456191..457153
/locus_tag="BARCL_0418"
/db_xref="GeneID:10138486"
CDS 456191..457153
/locus_tag="BARCL_0418"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158683.1"
/db_xref="GI:319898590"
/db_xref="GeneID:10138486"
/translation="MMILPLNSEAIKQAVTILQQGKLVALPTETVYGLAGDATDGKAV
ASIFSTKGRPPFNPLIVHVSDIVMAECYVEIDLLSRRLMEAFWPGPLTVVLPLKVHHN
IHPLTTAGLNTLAVRFPRGGFAEIVRHFGRPLAAPSANQSGKLSPTSATSVFTSLGTS
VPLIIDGGDSKIGLESTIIKICDENVYILRPGGLAIEEIERVAKKSVKRLDQQVAIEA
PGMLRSHYAPDTSVRLNVKRVESGEALLAFGPKRIEGFENAIAVLNLSETGRLEEAAF
HLFQYMQELDSLKVKCIAVEPIPFYGLGEAINDRLTRAAAPKGK"
misc_feature 456194..456805
/locus_tag="BARCL_0418"
/note="Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis]; Region: SUA5;
COG0009"
/db_xref="CDD:30359"
misc_feature 456770..457138
/locus_tag="BARCL_0418"
/note="Putative GTP-binding controlling metal-binding;
Region: SUA5; pfam03481"
/db_xref="CDD:202661"
gene 457156..458565
/locus_tag="BARCL_0419"
/db_xref="GeneID:10137471"
CDS 457156..458565
/locus_tag="BARCL_0419"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_004158684.1"
/db_xref="GI:319898591"
/db_xref="GeneID:10137471"
/translation="MEQDLIESFRSIVGSEYAITDQALITPYLFENRRLFHGKTPLLL
RPSSTKEVSLIMHLASQTCTPIVPQGGNTGLVGAQQPDDSGHSVILSMERLNKIRSLD
LKGNFALVEAGVVLQTLQKKADEMNRFFPLSLASEESCQIGGNLSSNAGGTAVLAYGN
MRDLCLGLEVVLPDGRILDDLRFVKKDNSGYNLKDLFIGAEGTLGVITAAVLKLFPKP
EGQEVALVGLDSPAKVVELLSLAQCYGGTLLTGFELMGKLSFQMALDYKMCIRSPFDH
EHEWYVLISMSSSRSGNDALSALHVILEMALKNFIIDDAVVAKSLKQQDFFWQLRESI
SPAQKLAGGSIKHDIAVPIASIPDFIAESALIVEEMIPGARVVCFGHVGDGNLHYNIT
QPIGADTEAFLKLWPKITHRIHCLAMQYQGTFSAEHGIGQLKREELRNFKSPVSLEIM
QEIKKIFDPLGIMNPGKIL"
misc_feature 457177..458562
/locus_tag="BARCL_0419"
/note="FAD/FMN-containing dehydrogenases [Energy
production and conversion]; Region: GlcD; COG0277"
/db_xref="CDD:30625"
misc_feature 457279..457692
/locus_tag="BARCL_0419"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
gene 458713..459243
/locus_tag="BARCL_0420"
/db_xref="GeneID:10137472"
CDS 458713..459243
/locus_tag="BARCL_0420"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 4 : Homologs of previously reported genes
of unknown function"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158685.1"
/db_xref="GI:319898592"
/db_xref="GeneID:10137472"
/translation="MANQCFNQAKAVLEFRLDPCHLPQMTTYFVSKTGNQIICSLNER
GVFLKFGASSSLSRLIPAHHFRGIAARIVDTFSGGKAIKLELFHVDEEICIPLLVSRK
LNNVFLDWRLWAQIYNLPMLMIDEYNSIIKVQDRSVLHQFFHRVSSYSVQKRFLLRCN
DSLGLRLVIDNQTALQ"
gene 459388..459954
/locus_tag="BARCL_0421"
/db_xref="GeneID:10137473"
CDS 459388..459954
/locus_tag="BARCL_0421"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 5 : No homology to any previously reported
sequences"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004158686.1"
/db_xref="GI:319898593"
/db_xref="GeneID:10137473"
/translation="MRVLVFKLDKEKAIEAQKAHGRRYIRRLRTFLNLLILWLMCVFI
YCGFLIMIEGQNWAHYWGKSFIKTVCIYAAIICIIWALNYYVLVTHKAHRLVKSNQQI
GLKQIWQWDDHALAIRNSYIHGTYPFRLFYDWHEYPNFIALYISEEKFNILPKAIMTK
EQLADLRTILSREITSPRKKIKKSNFPA"
misc_feature 459715..459897
/locus_tag="BARCL_0421"
/note="YcxB-like protein; Region: YcxB; pfam14317"
/db_xref="CDD:206485"
gene complement(459938..461212)
/gene="purD"
/locus_tag="BARCL_0422"
/db_xref="GeneID:10137474"
CDS complement(459938..461212)
/gene="purD"
/locus_tag="BARCL_0422"
/EC_number="6.3.4.13"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine-glycine ligase"
/protein_id="YP_004158687.1"
/db_xref="GI:319898594"
/db_xref="GeneID:10137474"
/translation="MNVLLIGSGGREHALAWKIAASPLLTKLYCTPGNPATMEFGENI
DLDIDDHCSVINFCKKNAIDLAVVGPEAPLVAGITDALNAAHICVFGPNQKATQLEGS
KGFTKDLCYRNNIPTAPYQRFDNASKAKSYIHQQGIPIVIKADGLAAGKGVVVAMTIE
EAFDAIDACFEGTFGDAGKEVVVEAFLEGEEASFFCLCDGKIAIPFGSAQDHKRVGDG
DTGVNTGGMGAYSPAPIMTEEMVNRTLKEIVIPALRGMAEMDIYFKGILFVGLMITQK
GPQLIEFNVRFGDPECQVLMMRLKDDILPLFLSAAQGNLQKKNLQWSEETALTVVMAA
NGYPVSPQKGSVIRNIDKVNSLPNVKVFQAGTALRNGELIANSGRVLNITAIGKTIKL
AQKRAYEAVDYIDWPQGFVRRDIGWRAIMREN"
misc_feature complement(459947..461212)
/gene="purD"
/locus_tag="BARCL_0422"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:179154"
misc_feature complement(460913..461212)
/gene="purD"
/locus_tag="BARCL_0422"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:202429"
misc_feature complement(460337..460912)
/gene="purD"
/locus_tag="BARCL_0422"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:201585"
misc_feature complement(459953..460234)
/gene="purD"
/locus_tag="BARCL_0422"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:202428"
gene 461303..462310
/gene="ubiA"
/locus_tag="BARCL_0423"
/db_xref="GeneID:10138443"
CDS 461303..462310
/gene="ubiA"
/locus_tag="BARCL_0423"
/EC_number="2.5.1.-"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="4-hydroxybenzoate octaprenyltransferase"
/protein_id="YP_004158688.1"
/db_xref="GI:319898595"
/db_xref="GeneID:10138443"
/translation="MKKSKDILHIQSYEKQGRVIDAAPKQWVYDLLPCSLWLYAQLAR
WDRPIGWKLLMWPCFWSTTMAIFSCEMSQLSLLSIIINWVWYLFLFFLGSIAMRGAGC
TWNDLVDQEIDSQIERTRSRPLPTGQVSRFQAKVFILIQCVIGLGVLLQFNVFTFFLG
LSSLVAVALYPFMKRITNWPQFFLGIAFNWGALMGWAAVHGSLSSAPIVLYIGSILWT
IGYDTIYAHQDKDDDVIVGVRSTALLFGKRTKYALAILYSGFVILTSLAFYLAQVPIL
SFLGIFIAAVHMFIQIKVIDIDNGLQCLQLFKSNSFVGFLIFAGLICGGISMILYSVI
S"
misc_feature 461327..462280
/gene="ubiA"
/locus_tag="BARCL_0423"
/note="4-hydroxybenzoate polyprenyltransferase; Reviewed;
Region: ubiA; PRK12878"
/db_xref="CDD:183808"
gene complement(462398..463021)
/gene="pdxH"
/locus_tag="BARCL_0424"
/db_xref="GeneID:10138641"
CDS complement(462398..463021)
/gene="pdxH"
/locus_tag="BARCL_0424"
/EC_number="1.4.3.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Pyridoxamine 5 prime-phosphate oxidase"
/protein_id="YP_004158689.1"
/db_xref="GI:319898596"
/db_xref="GeneID:10138641"
/translation="MNNTKQTNDNFVPIQEPFVLFTRWLEEAIISEINDPNAMALATV
DVTGLPNVRMVLLKDFSPKGFTFYTNYESCKGQEILASMKASLGFHWKSLRRQVRIRG
SIEKVSPEEADAYFQSRPRGSQIGAWASKQSQILENRSVLEKAVTEYTARYAVGNIPR
PPYWSGFCVNPFSIEFWCDRPFRLHDRLLFTRDSIQQNNWKKQKLYP"
misc_feature complement(462401..462979)
/gene="pdxH"
/locus_tag="BARCL_0424"
/note="pyridoxamine 5'-phosphate oxidase; Provisional;
Region: PRK05679"
/db_xref="CDD:180195"
misc_feature complement(462689..462949)
/gene="pdxH"
/locus_tag="BARCL_0424"
/note="Pyridoxamine 5'-phosphate oxidase; Region:
Pyridox_oxidase; pfam01243"
/db_xref="CDD:201681"
misc_feature complement(462401..462532)
/gene="pdxH"
/locus_tag="BARCL_0424"
/note="Pyridoxine 5'-phosphate oxidase C-terminal
dimerisation region; Region: PNPOx_C; pfam10590"
/db_xref="CDD:204522"
gene 463341..464231
/gene="dnaJ"
/locus_tag="BARCL_0425"
/db_xref="GeneID:10138384"
CDS 463341..464231
/gene="dnaJ"
/locus_tag="BARCL_0425"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="heat shock chaperone protein DnaJ"
/protein_id="YP_004158690.1"
/db_xref="GI:319898597"
/db_xref="GeneID:10138384"
/translation="MRDPYTVLGVARTAKPQEIKSAFRKLAKKYHPDHNMGDAKAKEK
FAEVNQAYEIIGDKDKKIQFDRGEIDAEGKPIHKTYNAGGHFRDGHNPFSGGARGGDF
GFSGGVDFDASDIFRDLFGRGRNFSNSTQYNQSQQGAHIRTSISVTLEQMVGAEKVET
IFPNGKKLKIKLPTYIEDGQTIRLKGQGEKVPYGRSGDALVTVQIQKHSRLRVEGRAL
HLDLPVPLKHAVLGSKEEVQTLEGRVVVTIPAWSSSDRVLRLKGKGLHLKNGERDDLY
VHVRIMLPEADPALEQFFQM"
misc_feature 463344..464195
/gene="dnaJ"
/locus_tag="BARCL_0425"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14299"
/db_xref="CDD:184613"
misc_feature 463347..463511
/gene="dnaJ"
/locus_tag="BARCL_0425"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(463431..463439,463464..463466,463473..463478,
463485..463490)
/gene="dnaJ"
/locus_tag="BARCL_0425"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 463761..464195
/gene="dnaJ"
/locus_tag="BARCL_0425"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(464016..464021,464028..464033,464091..464102,
464187..464195)
/gene="dnaJ"
/locus_tag="BARCL_0425"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 464363..465181
/gene="fabI"
/locus_tag="BARCL_0426"
/db_xref="GeneID:10138080"
CDS 464363..465181
/gene="fabI"
/locus_tag="BARCL_0426"
/EC_number="1.3.1.9"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Enoyl-[acyl-carrier-protein ] reductase"
/protein_id="YP_004158691.1"
/db_xref="GI:319898598"
/db_xref="GeneID:10138080"
/translation="MANSNDLLCGKRGLILGLANNRSIAWGITKAASAAGAELAFTYQ
GEALKRRVEPLAEEVKGIVCGHCDVSDSASIDSVFSEIERRWGKLDFLVHAIGFSNKD
ELSGRYIDVSESNFMMTMNISVYSLTALTQRAEKLMPDGGSILTLTYYGAEKVVPNYN
VMGVAKAALEASVKYLAVDLGPKNIRVNALSAGPIKTLAASGIGDFRYILKWNEYNAP
LRRTVTIEEVGDSALYFLSDLSRSVTGEVHHVDSGYNIIGMKAVDAPDISVVKE"
misc_feature 464363..465178
/gene="fabI"
/locus_tag="BARCL_0426"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK08159"
/db_xref="CDD:181260"
misc_feature 464390..465136
/gene="fabI"
/locus_tag="BARCL_0426"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(464411..464419,464429..464434,464492..464494,
464561..464569,464645..464656,464726..464728,
464801..464809,464837..464839,464858..464860,
464936..464947,464951..464962)
/gene="fabI"
/locus_tag="BARCL_0426"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(464462..464464,464567..464578,464585..464587,
464681..464701,464708..464713,464720..464725,
464732..464737,464744..464746,464756..464758,
464765..464767,464813..464818,464822..464833,
464837..464842,464849..464854,464861..464866,
464873..464878,464882..464899,464903..464908,
464987..464989,464996..464998,465014..465025,
465041..465043,465050..465055,465062..465064,
465077..465079,465083..465121,465125..465136)
/gene="fabI"
/locus_tag="BARCL_0426"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(464567..464578,464681..464701,464708..464713,
464720..464725,464732..464737,464744..464746,
464753..464758,464765..464767,464813..464818,
464822..464830,464837..464842,464849..464854,
464861..464866,464873..464878,464882..464890,
464894..464902)
/gene="fabI"
/locus_tag="BARCL_0426"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(464651..464653,464657..464659,464807..464809,
464837..464839,464846..464848,464858..464860,
464957..464962,464969..464971,464978..464980)
/gene="fabI"
/locus_tag="BARCL_0426"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(464729..464731,464807..464809,464846..464848,
464858..464860)
/gene="fabI"
/locus_tag="BARCL_0426"
/note="active site"
/db_xref="CDD:187630"
gene 465346..466206
/locus_tag="BARCL_0427"
/db_xref="GeneID:10138110"
CDS 465346..466206
/locus_tag="BARCL_0427"
/EC_number="4.2.3.5"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="chorismate synthase"
/protein_id="YP_004158692.1"
/db_xref="GI:319898599"
/db_xref="GeneID:10138110"
/translation="MSHNTFGHLFRVTTWGESHGVSVGCVIDGCPRGISFTLAEIQAY
LDKRRPGQSKYTTRRQELDQVEILSGVVTQGDSATLVTTGTPVSILIRNTNQRSEDYD
AVVHHYRPGHADFTYDVKYGIRDYRGGGHASVRETVARVAAGAFARKVVPGLIVRGAV
IAIGPHHINRSRWNWSEIDNNSFFTPDAEAACVFAKYMDKLLKDGSSAGAVVEIIAEN
VPPGLGAPIYAKLDQDIASFLMSINAIKGVEIGDGFAAALLTGKENVDEMRVGSDEKP
LFYLIMLEAL"
misc_feature 465373..>466167
/locus_tag="BARCL_0427"
/note="Chorismase synthase, the enzyme catalyzing the
final step of the shikimate pathway; Region:
Chorismate_synthase; cd07304"
/db_xref="CDD:143612"
misc_feature order(465376..465396,465415..465417,465421..465423,
465427..465429,465439..465444,465541..465546,
465550..465555,465592..465597,465601..465603,
465607..465609,465613..465615,465694..465708,
465736..465741,465763..465765,465946..465948,
465961..465978,466009..466011,466015..466023,
466033..466035,466039..466044,466051..466059,
466063..466068,466072..466074,466081..466095,
466102..466107,466111..466116,466126..466131)
/locus_tag="BARCL_0427"
/note="Tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:143612"
misc_feature order(465400..465402,465487..465489,465676..465681,
465739..465750,465757..465759,466072..466077)
/locus_tag="BARCL_0427"
/note="active site"
/db_xref="CDD:143612"
misc_feature order(465676..465684,465736..465738,465742..465744,
466069..466077)
/locus_tag="BARCL_0427"
/note="FMN-binding site [chemical binding]; other site"
/db_xref="CDD:143612"
gene 466450..467568
/gene="ribA"
/locus_tag="BARCL_0428"
/db_xref="GeneID:10137475"
CDS 466450..467568
/gene="ribA"
/locus_tag="BARCL_0428"
/EC_number="3.5.4.25"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="GTP cyclohydrolase II"
/protein_id="YP_004158693.1"
/db_xref="GI:319898600"
/db_xref="GeneID:10137475"
/translation="MVYNQKKVVSAIQAFERGEIVVVMDDDDRENEGDLIVAAIHCTE
EKMAFIMRYTSGIICTPLPKEEAQRLNLTPMVSDNDSMYCTKFTVTVDFKYGITTGIS
AHDRTLAVRNLANPNANANDFVRPGHIFPLIAHEGGVLMRSGHTEAAVDLCKLSGLPP
VGVIGELVNDDGSVKHGDEVIKFAQDHQLHTITVADLIAYRRRKETLIKHVGEMQIET
SVGPAVVQSYQLPWETVQHVAIVFGDIRDGEDIPVRLHRENILNDVFGRASNIEVIMR
RMIEEEKRGVFVYLRGGSVGVGCQSAINDQEITTKDLESHIQAIEREKEWRQIGLGAQ
ILRHLGISSVIVYASKERHYVGLEGFGIRISRTDIDIL"
misc_feature 466462..467541
/gene="ribA"
/locus_tag="BARCL_0428"
/note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate
synthase/GTP cyclohydrolase II protein; Provisional;
Region: PRK09314"
/db_xref="CDD:181775"
misc_feature 466471..467052
/gene="ribA"
/locus_tag="BARCL_0428"
/note="3,4-dihydroxy-2-butanone 4-phosphate synthase;
Region: DHBP_synthase; pfam00926"
/db_xref="CDD:201508"
misc_feature 467071..467544
/gene="ribA"
/locus_tag="BARCL_0428"
/note="GTP cyclohydrolase II; Region: GTP_cyclohydro2;
pfam00925"
/db_xref="CDD:201507"
misc_feature order(467080..467100,467122..467124,467128..467136,
467155..467157,467161..467163,467167..467169,
467221..467223,467227..467232,467236..467250,
467263..467268,467275..467277,467314..467316,
467320..467322,467344..467349,467356..467361,
467365..467370,467377..467379)
/gene="ribA"
/locus_tag="BARCL_0428"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:88311"
misc_feature order(467209..467226,467230..467232,467260..467262,
467323..467334,467353..467355,467365..467367,
467374..467376,467392..467394,467422..467424,
467428..467430,467491..467499,467506..467508)
/gene="ribA"
/locus_tag="BARCL_0428"
/note="active site"
/db_xref="CDD:88311"
gene 467576..467830
/gene="xseB"
/locus_tag="BARCL_0429"
/db_xref="GeneID:10138473"
CDS 467576..467830
/gene="xseB"
/locus_tag="BARCL_0429"
/EC_number="3.1.11.6"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="Exodeoxyribonuclease small subunit"
/protein_id="YP_004158694.1"
/db_xref="GI:319898601"
/db_xref="GeneID:10138473"
/translation="MKQEENKGDIATLSFEEALKQLEAIVENLERGDVPLEQSIDIYE
RGEALKNHCDRLLKVAEAKVEKIQLSGEGKPEGVEPLDPE"
misc_feature 467585..467827
/gene="xseB"
/locus_tag="BARCL_0429"
/note="exodeoxyribonuclease VII small subunit;
Provisional; Region: PRK00977"
/db_xref="CDD:179195"
gene 468287..470209
/gene="dxs"
/locus_tag="BARCL_0430"
/db_xref="GeneID:10138692"
CDS 468287..470209
/gene="dxs"
/locus_tag="BARCL_0430"
/EC_number="2.2.1.7"
/inference="ab initio prediction:AMIGene:2.0"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_004158695.1"
/db_xref="GI:319898602"
/db_xref="GeneID:10138692"
/translation="MSRPLTPLLDLIHLPQDLRALPESNLLQLAHELRTETIDTVSVT
GGHLGAGLGVIELTIALHYVFNTPDDRIIWDVGHQTYPHKILTGRRDRIRTLRQEGGL
SGFTKRSESVYDPFGAGHSSTSISAGLGMAMVSALKAEERRNIISVIGDGAISAGMAY
EAMNNAGALDARLIVILNDNDMSIAPPTGAMSAHLARLVSRPSYRNLRQRIKILSKKL
PKFFLEKARYSEEFARSFFVGGTLFDELGFYYVGPIDGHNFGHLLPVLKNVRECPDGP
VLVHVVTHKGKGYAPAEASSDKYHGVNRFDVITGKQVKAQSNSLSYTKVFSKALIEEA
THDNKIVGITAAMPNGTGLDFFAEKFPKRMFDVGIAEQHAVTFAAGIASEGYKPFVAI
YSTFLQRAYDQIIHDVSLQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPDFVIM
APSDEVELMHMVRTAAAYDQGPISFRYPRGEGIGMDLPQRGELLEIGKGRVLCEGSKI
ALVCFGTRLSEVLVAADELVVEGLSTTVADARFAKPLDRDLMRRLAREHEVLVTIEEG
AIGGFGAHLLQFLSQEGLLEHGLKVRTLKFPDKYLNHGLPDKVLSQIGLDATGIINTV
FSALGRKLRPILRTRV"
misc_feature 468293..470170
/gene="dxs"
/locus_tag="BARCL_0430"
/note="1-deoxy-D-xylulose-5-phosphate synthase;
Provisional; Region: PRK05444"
/db_xref="CDD:180086"
misc_feature 468419..469153
/gene="dxs"
/locus_tag="BARCL_0430"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:73294"
misc_feature order(468647..468649,468734..468745,468824..468826,
468830..468832)
/gene="dxs"
/locus_tag="BARCL_0430"
/note="TPP-binding site; other site"
/db_xref="CDD:73294"
misc_feature 469256..469723
/gene="dxs"
/locus_tag="BARCL_0430"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(469298..469300,469304..469306,469322..469324,
469373..469375,469382..469384,469388..469405,
469412..469417,469421..469429,469481..469483,
469490..469495,469568..469570,469577..469579,
469625..469630,469691..469693)
/gene="dxs"
/locus_tag="BARCL_0430"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(469322..469324,469382..469384,469391..469399,
469478..469483,469487..469489,469568..469570,
469574..469576,469601..469606,469610..469615,
469619..469621)
/gene="dxs"
/locus_tag="BARCL_0430"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(469391..469393,469397..469399,469472..469474,
469481..469483)
/gene="dxs"
/locus_tag="BARCL_0430"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 469775..470146
/gene="dxs"
/locus_tag="BARCL_0430"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 470421..470489
/locus_tag="BARCL_0431"
/db_xref="GeneID:10138091"
CDS 470421..470489
/locus_tag="BARCL_0431"
/in 