LOCUS NC_015185 1541968 bp DNA circular CON 10-JUN-2013
DEFINITION Desulfurobacterium thermolithotrophum DSM 11699 chromosome,
complete genome.
ACCESSION NC_015185
VERSION NC_015185.1 GI:325294206
DBLINK Project: 63405
BioProject: PRJNA63405
KEYWORDS .
SOURCE Desulfurobacterium thermolithotrophum DSM 11699
ORGANISM Desulfurobacterium thermolithotrophum DSM 11699
Bacteria; Aquificae; Aquificales; Desulfurobacteriaceae;
Desulfurobacterium.
REFERENCE 1 (bases 1 to 1541968)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Mikhailova,N., Daligault,H., Detter,J.C., Tapia,R., Han,C.,
Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P.,
Woyke,T., Wu,D., Spring,S., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Desulfurobacterium thermolithotrophum DSM
11699
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1541968)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1541968)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Mikhailova,N., Daligault,H., Detter,J.C., Tapia,R., Han,C.,
Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Brambilla,E.,
Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002543.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4085235
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Desulfurobacterium thermolithotrophum BSA,
DSM 11699
collection_date :: Missing
lat_lon :: 23.366667 -44.933333
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 11699
biotic_relationship :: Free living
trophic_level :: Autotroph
rel_to_oxygen :: Anaerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02913
Type Strain :: Yes
Greengenes ID :: 558747
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Deep-sea hydrothermal vent chimney;
Mid-Atlantic Ridge
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Temperature Optimum :: 70C
pH :: 6.0
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1541968
/organism="Desulfurobacterium thermolithotrophum DSM
11699"
/mol_type="genomic DNA"
/strain="DSM 11699"
/isolation_source="deep-sea hydrothermal vent chimney"
/culture_collection="DSMZ:DSM 11699"
/db_xref="taxon:868864"
/country="Atlantic Ocean: Mid-Atlantic Ridge"
/lat_lon="23.366667 N 44.933334 W"
gene 40..1125
/locus_tag="Dester_0001"
/db_xref="GeneID:10270803"
CDS 40..1125
/locus_tag="Dester_0001"
/note="COGs: COG0438 Glycosyltransferase;
InterPro IPR001296;
KEGG: lbf:LBF_0652 glycosyltransferase;
PFAM: Glycosyl transferase, group 1;
SPTR: Glycosyl transferase group 1;
PFAM: Glycosyl transferases group 1"
/codon_start=1
/transl_table=11
/product="group 1 glycosyl transferase"
/protein_id="YP_004280721.1"
/db_xref="GI:325294207"
/db_xref="GeneID:10270803"
/translation="MKILHVDTEKGWRGGEQQLFYLVKGLKEKGIESAIACRKGDELE
KKCKESGFTTIPLSGRQFEDIFRIGIVGKEFDIIHAHAAKAHTISALSKKFHQKPVIY
TRRVDYLPKKNRVTALKYRLTDKVVAISKYVKEVLEESIKIPTDKLSVIYSAVDTEIE
KNVDYEKVERIKKELKGKPLIGTAAALTQQKNIPNFIEAAKILIKRYPEAKFVVAGEG
KLRKELQSLIERLNLQENFKLLGFKKDIQNYIKAFDIFVLPSDFEGLGSSILIAMFLK
VPVVSTDAGGTKEVVIDGKTGILVPKKNPQALAEGILRLLEDEKLKEQVTSNAYSMVM
DKFSVDKMVDAYIALYGEVIKSGKNLG"
misc_feature 43..1089
/locus_tag="Dester_0001"
/note="This family is most closely related to the GT1
family of glycosyltransferases and named after YqgM in
Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to...; Region:
GT1_YqgM_like; cd03801"
/db_xref="CDD:99974"
misc_feature 67..513
/locus_tag="Dester_0001"
/note="Glycosyltransferase Family 4; Region:
Glyco_transf_4; pfam13439"
/db_xref="CDD:222130"
misc_feature <310..1110
/locus_tag="Dester_0001"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:223515"
gene 1106..2515
/locus_tag="Dester_0002"
/db_xref="GeneID:10269210"
CDS 1106..2515
/locus_tag="Dester_0002"
/note="COGs: COG0593 ATPase involved in DNA replication
initiation;
HAMAP: Chromosomal replication control, initiator DnaA;
InterPro IPR013317: IPR013159: IPR001957: IPR003593;
KEGG: dth:DICTH_1702 chromosomal replication initiator
protein DnaA;
PFAM: Chromosomal replication control, initiator
(DnaA)/regulator (Hda); Chromosomal replication initiator,
DnaA C-terminal;
SMART: Chromosomal replication initiator, DnaA C-terminal;
ATPase, AAA+ type, core;
SPTR: Chromosomal replication initiator protein dnaA;
TIGRFAM: Chromosomal replication control, initiator DnaA;
PFAM: domain; Bacterial dnaA protein;
TIGRFAM: chromosomal replication initiator protein DnaA"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein dnaA"
/protein_id="YP_004280722.1"
/db_xref="GI:325294208"
/db_xref="GeneID:10269210"
/translation="MEKTWDKCLREIRKEVKPQLYKTMFKDLKVVSIDSGVLKLKAKD
RIVKEYLEKNYLNVIKEVVSKEFGRQLDVAIVLAEDIHKPLQLELNLFEVKKRKENLE
SNLNPKYTFENFVVGANNQFAHAAAVAVAENPGKAYNPLFIYGGVGLGKTHLMQAIGN
FIKNVSPSKTVVYITTESFMNELIDALKNDKMTEFREKYRTVDVLLIDDIQFISGKDG
TQIEFFHTFNALYDAGKQVVLTSDRPPKDIPMLTERLRSRFEWGLIADIQPPDFETRI
AILRRKAEAEGIEVEDSILKLIANIIKSNIRQLEGALTKLKAKATLEGKPINEELVKE
LFSETTFTNLKNTSTKKLPIEKIKKVVCEEFKIEMKQMEGTSRKKQIALARQIAMYLA
RKLGNFSYSKIASAFNRDDHTTVIHAVHKIEEMRKKNPNLNQIIMELEVRLEEFSQDV
DEVIHRSVDKYVDKYVDKS"
misc_feature 1106..2440
/locus_tag="Dester_0002"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:234667"
misc_feature 1109..1300
/locus_tag="Dester_0002"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:221153"
misc_feature 1505..1894
/locus_tag="Dester_0002"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 1538..1561
/locus_tag="Dester_0002"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(1541..1564,1727..1729,1829..1831)
/locus_tag="Dester_0002"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1715..1732
/locus_tag="Dester_0002"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 1865..1867
/locus_tag="Dester_0002"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 2165..2434
/locus_tag="Dester_0002"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(2234..2236,2258..2263,2282..2284,2300..2308,
2333..2347,2354..2356,2363..2368)
/locus_tag="Dester_0002"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 2736..3833
/locus_tag="Dester_0003"
/db_xref="GeneID:10269211"
CDS 2736..3833
/locus_tag="Dester_0003"
/EC_number="2.7.7.7"
/note="COGs: COG0592 DNA polymerase sliding clamp subunit
(PCNA homolog);
InterPro IPR001001;
KEGG: pmx:PERMA_1539 DNA polymerase III, beta subunit;
PFAM: DNA polymerase III, beta chain;
PRIAM: DNA-directed DNA polymerase;
SMART: DNA polymerase III, beta chain;
SPTR: DNA polymerase III beta chain;
TIGRFAM: DNA polymerase III, beta chain;
PFAM: DNA polymerase III beta subunit, C-terminal domain;
DNA polymerase III beta subunit, N-terminal domain; DNA
polymerase III beta subunit, central domain;
TIGRFAM: DNA polymerase III, beta subunit"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_004280723.1"
/db_xref="GI:325294209"
/db_xref="GeneID:10269211"
/translation="MKIRISSNNIKSAVKKVFSAADKRGNIPILSNILFEAEDNILKL
TATNLEIGVSTFIDCEVTESGKTTVNAQKCAKLFSSLIGEEFEVETDDSKLIVKSANS
RFSLATLPPEEFPEIEFPESFGVKLSSSDIDRAIKKVSYAVSKDEARYILTGVYFRSF
GDKIHAVATDGHRLALFEMKAEAEEFSSIIPRKALSELKKLLKESDEIELLGKENKIF
FRIGDTLFWSSVIDGEYPDYMAVIPEDNPLECIAIREELVNALKEVSVIYDKEEIRAV
ILNLTPGNLRLIARKMELDSASEEAEVNIPVEYSGEEFEIGFNINHLLEAVSSFDGDT
IKILMDQPISPVLIVSEEEPELKNVIMPMKV"
misc_feature 2736..3830
/locus_tag="Dester_0003"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:235541"
misc_feature 2736..3827
/locus_tag="Dester_0003"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:238082"
misc_feature order(2805..2807,2949..2951,2970..2972,3312..3314)
/locus_tag="Dester_0003"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:238082"
misc_feature order(2952..2954,2961..2963,3036..3038,3042..3044,
3531..3533,3627..3632)
/locus_tag="Dester_0003"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238082"
misc_feature order(3240..3242,3246..3257,3690..3692,3816..3827)
/locus_tag="Dester_0003"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:238082"
misc_feature order(3240..3242,3246..3251,3456..3458,3564..3566,
3603..3608,3699..3701,3816..3827)
/locus_tag="Dester_0003"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:238082"
gene 3837..4364
/locus_tag="Dester_0004"
/db_xref="GeneID:10269212"
CDS 3837..4364
/locus_tag="Dester_0004"
/note="COGs: COG0558 phosphatidylglycerophosphate
synthase;
InterPro IPR000462: IPR004570;
KEGG: swo:Swol_1261
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase;
SPTR: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase;
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol/glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_004280724.1"
/db_xref="GI:325294210"
/db_xref="GeneID:10269212"
/translation="MGKVKTIPNFLTLIRIFLLPFVVFSIISKQFFVALVLFVLSAVT
DFLDGYIARKQKSITSLGMLLDPVADKLLTSSTLISLAYVKLCDPYSVIAIVGREEAV
TGMRAIAASRGLVIPASKGGKIKTTLIMISIILLLSGLKNVGEVFLIVSAGVALYTGF
VYFIRFFESFGEEDD"
misc_feature 3849..4343
/locus_tag="Dester_0004"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:241872"
gene 4357..4947
/locus_tag="Dester_0005"
/db_xref="GeneID:10269213"
CDS 4357..4947
/locus_tag="Dester_0005"
/note="COGs: COG0344 membrane protein;
HAMAP: Protein of unknown function DUF205;
InterPro IPR003811: IPR020788;
KEGG: saf:SULAZ_1187 acyl-phosphate glycerol 3-phosphate
acyltransferase;
PFAM: Protein of unknown function DUF205;
SPTR: Glycerol-3-phosphate acyltransferase;
TIGRFAM: Membrane protein YgiH;
PFAM: Domain of unknown function (DUF205);
TIGRFAM: acyl-phosphate glycerol 3-phosphate
acyltransferase"
/codon_start=1
/transl_table=11
/product="Glycerol-3-phosphate acyltransferase"
/protein_id="YP_004280725.1"
/db_xref="GI:325294211"
/db_xref="GeneID:10269213"
/translation="MIDSIVILYSFLAFLFGSIPFGYVIGKLKGVDVRQHGSGNIGAT
NVSRVLGKKYGAFVLFLDALKGFLPVFILKFLGYPLEYQVLAGFFAILGHCFSPFLKF
KGGKGVATGLGVFLVISPKVTFIVLGIFFSVFFLTRYVSLSSIIAALSYPIIFRFLEK
PSEFTSLLVFLTAFVVVGKHYQNIIRLLKGEEKRFK"
misc_feature 4360..4944
/locus_tag="Dester_0005"
/note="putative glycerol-3-phosphate acyltransferase PlsY;
Provisional; Region: PRK00220"
/db_xref="CDD:234691"
gene 4947..5831
/locus_tag="Dester_0006"
/db_xref="GeneID:10269214"
CDS 4947..5831
/locus_tag="Dester_0006"
/note="COGs: COG0142 Geranylgeranyl pyrophosphate
synthase;
InterPro IPR000092;
KEGG: gem:GM21_3026 polyprenyl synthetase;
PFAM: polyprenyl synthetase;
SPTR: polyprenyl synthetase;
PFAM: polyprenyl synthetase"
/codon_start=1
/transl_table=11
/product="polyprenyl synthetase"
/protein_id="YP_004280726.1"
/db_xref="GI:325294212"
/db_xref="GeneID:10269214"
/translation="MELKEYLKERKAIIDREILKYLPSVPPFGKRLYEAVKYSLTVGG
KRLRPILCMAGCEVVGGNYEEALTPACAIEMIHTYSLIHDDLPAMDNDTLRRGHPTTW
YKFDEATAILAGDALLNRAFEVLSQWNFDCDRKIKVIEEISKASGMLGMVLGQQCDMD
AEGRKDVTLEELLFIHRHKTGRLITASVVSGGITGGGSEEEIGTLKKYGDSIGLAFQI
IDDVLDVIGDQNKIGKNVGSDLEKGKVTFVTFFGVDGAKRKAREEIEKAISALELFPA
KKNELLKKLAHFIVEREY"
misc_feature 4947..5828
/locus_tag="Dester_0006"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:223220"
misc_feature 5034..5822
/locus_tag="Dester_0006"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature order(5172..5174,5181..5189,5193..5201,5211..5216,
5229..5234,5409..5411,5418..5420,5481..5486,5493..5495,
5604..5609,5616..5618,5646..5648,5661..5663,5676..5678)
/locus_tag="Dester_0006"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature order(5181..5204,5211..5216)
/locus_tag="Dester_0006"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature order(5196..5201,5214..5216,5229..5234,5418..5420,
5481..5483,5604..5609,5616..5618,5646..5648,5661..5663,
5676..5678)
/locus_tag="Dester_0006"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature order(5196..5201,5214..5216,5229..5234,5481..5483,
5604..5609)
/locus_tag="Dester_0006"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature order(5196..5201,5214..5216,5229..5234,5418..5420,
5481..5483)
/locus_tag="Dester_0006"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature order(5220..5264,5625..5630,5646..5663,5670..5684)
/locus_tag="Dester_0006"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature order(5604..5609,5616..5618,5646..5648,5661..5663,
5676..5678)
/locus_tag="Dester_0006"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene 5846..7705
/locus_tag="Dester_0007"
/db_xref="GeneID:10269215"
CDS 5846..7705
/locus_tag="Dester_0007"
/EC_number="2.2.1.7"
/note="COGs: COG1154 deoxyxylulose-5-phosphate synthase;
HAMAP: deoxyxylulose-5-phosphate synthase;
InterPro IPR005475: IPR005476: IPR005477;
KEGG: aae:aq_881 1-deoxy-D-xylulose-5-phosphate synthase;
PFAM: transketolase-like, pyrimidine-binding domain;
transketolase, C-terminal;
PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase;
SPTR: 1-deoxy-D-xylulose-5-phosphate synthase;
TIGRFAM: deoxyxylulose-5-phosphate synthase;
PFAM: transketolase, C-terminal domain; transketolase,
pyrimidine binding domain;
TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose-5-phosphate synthase"
/protein_id="YP_004280727.1"
/db_xref="GI:325294213"
/db_xref="GeneID:10269215"
/translation="MVLERVNSPDDVKKLSTEELRQLAQDVRKFIIDVVTKTGGHLAS
SLGVVELTLALLKVFSPPKDEIIWDVGHQSYPYKILTGRKEKFYTLRQYGGISGFPSI
KESPYDVFGVGHSSTSISAALGIRVGKKLKGEEGHVIAVIGDGALTAGEAYEGLNNAG
QLGEDLIVILNDNEMSISKNIGAISNYLTKVTTGEFLRKAKHRLEEVTKKIFGEKVYK
GLKRVEDLIVKGLFPPGMLFEELGFRYVGPIDGHDLDTLIVTLENVSKMSGPTLVHVI
TKKGKGYEPAEEKPERFHGISPKKTNSDSKQPTYTEVFSKTLIEIGKKYKDIVAITAA
MPSGTGLDKFKEVFPERYYDVGIAEQHAVTFAAGMAKKGLKPVVAIYSTFLQRAFDQI
VHDVALQELPVVFAIDRAGLVGEDGATHHGAFDLSYLRIIPNMVVAVPKDEEELRHLL
YTAVRSNKPFAVRYPRGRGYGVLLREPLYEIPIGTWEVLRKGKDMAILANGWTVYQAL
DAAKELEKLGISVTVVNARYVKPLDEVLLRELAKEYELILTVEENTVKGGFGSTVDEF
LAPWYQGKLVNIGLPDEFIEHGDQNLLRRLAGIDKEGIKKKVMEFLKKRASSL"
misc_feature 5846..7681
/locus_tag="Dester_0007"
/note="1-deoxy-D-xylulose-5-phosphate synthase;
Provisional; Region: PRK05444"
/db_xref="CDD:235470"
misc_feature 5960..6694
/locus_tag="Dester_0007"
/note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
synthase (DXS) is a regulatory enzyme of the
mevalonate-independent pathway involved in terpenoid
biosynthesis. Terpeniods are plant natural products...;
Region: TPP_DXS; cd02007"
/db_xref="CDD:238965"
misc_feature order(6188..6190,6272..6283,6362..6364,6368..6370)
/locus_tag="Dester_0007"
/note="TPP-binding site; other site"
/db_xref="CDD:238965"
misc_feature 6779..7243
/locus_tag="Dester_0007"
/note="Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins; Region:
TPP_PYR_DXS_TK_like; cd07033"
/db_xref="CDD:132916"
misc_feature order(6821..6823,6827..6829,6845..6847,6896..6898,
6905..6907,6911..6928,6935..6940,6944..6952,7004..7006,
7013..7018,7091..7093,7100..7102,7148..7153,7214..7216)
/locus_tag="Dester_0007"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(6845..6847,6905..6907,6914..6922,7001..7006,
7010..7012,7091..7093,7097..7099,7124..7129,7133..7138,
7142..7144)
/locus_tag="Dester_0007"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132916"
misc_feature order(6914..6916,6920..6922,6995..6997,7004..7006)
/locus_tag="Dester_0007"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132916"
misc_feature 7295..7657
/locus_tag="Dester_0007"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:217227"
gene complement(7694..8641)
/locus_tag="Dester_0008"
/db_xref="GeneID:10269216"
CDS complement(7694..8641)
/locus_tag="Dester_0008"
/EC_number="1.1.1.262"
/note="COGs: COG1995 Pyridoxal phosphate biosynthesis
protein;
HAMAP: Pyridoxal phosphate (active vitamin B6)
biosynthesis PdxA;
InterPro IPR005255;
KEGG: pmx:PERMA_0123 4-hydroxythreonine-4-phosphate
dehydrogenase;
PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis
PdxA;
PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase;
SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase;
TIGRFAM: Pyridoxal phosphate (active vitamin B6)
biosynthesis PdxA;
manually curated;
PFAM: Pyridoxal phosphate biosynthetic protein PdxA;
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase"
/codon_start=1
/transl_table=11
/product="4-hydroxythreonine-4-phosphate dehydrogenase"
/protein_id="YP_004280728.1"
/db_xref="GI:325294214"
/db_xref="GeneID:10269216"
/translation="MQRAIGITLGDPAGIGSEILLKSLPFLRSLNIPIFIYGSKGVLS
FYSKLLRLPFSIKEVSSPINEPGTHLINVIDKIKFEVGKVSQEAGKAQIAFLERAVKD
AKKGLINAIVTLPINKESARLGGFTFPGHTEYLAYAFKTSEFAMMLANEKLKVVLLTT
HVALKDVPKLISKEKILSKLRLIHKSLNSPKIAVAALNPHAGENGLFGDEEIKIINPA
VKEAKRKGINVNGAISSDTVFVRALKGEFDVVLCMYHDQGLIPIKLLGFGNSVNVTLG
LPVVRTSVDHGTAYDIAGKGIADSESFKTAVKMALDLQT"
misc_feature complement(7703..8629)
/locus_tag="Dester_0008"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Region: pdxA; TIGR00557"
/db_xref="CDD:233023"
misc_feature complement(7712..8629)
/locus_tag="Dester_0008"
/note="4-hydroxythreonine-4-phosphate dehydrogenase;
Validated; Region: pdxA; PRK03743"
/db_xref="CDD:179641"
gene complement(8626..9879)
/locus_tag="Dester_0009"
/db_xref="GeneID:10269217"
CDS complement(8626..9879)
/locus_tag="Dester_0009"
/note="COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate
synthase;
HAMAP: DHBP synthase RibB; GTP cyclohydrolase II;
InterPro IPR000422: IPR000926;
KEGG: tal:Thal_0286 3,4-dihydroxy-2-butanone 4-phosphate
synthase;
PFAM: DHBP synthase RibB; GTP cyclohydrolase II;
SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase;
TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II;
PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone
4-phosphate synthase;
TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone
4-phosphate synthase"
/codon_start=1
/transl_table=11
/product="3,4-dihydroxy-2-butanone 4-phosphate synthase"
/protein_id="YP_004280729.1"
/db_xref="GI:325294215"
/db_xref="GeneID:10269217"
/translation="MVKGRFPLDRVEEAIEEIKKGKMVVVVDDPNRENEGDLVIAAEK
VTPEAINFMAKYGRGLICLALTEERCDELEIEPMTPRPTDPKETAFGISIDAHPKFGT
TTGISAYDRAITIKRAIDPEAKPEDFIKPGHVFPLRARKGGVLKRSGHTEAAVDLARL
AGLYPAGVICEIMDEDGSMMRLPKLIDYARKHGLKIISIADLIEYRMKSESLIRREAE
ANLPTPYGMWKIYAYTSLVDNKEHVALTMGEIREDEPILVRVHSECLTGDVFGSLKCD
CRSQLHKAMEMISEEGKGVIVYLRQEGRGIGLVNKIKAYHLQDHGFDTVEANKKLGFP
PDMRDFGIGAQILRDLGVKKMKLLTNNPKKLIGLEGYGLEVVERVPIEVGICEYNINY
LKTKKEKLGHLLNLEKKEDEKYNEQ"
misc_feature complement(8662..9864)
/locus_tag="Dester_0009"
/note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate
synthase/GTP cyclohydrolase II protein; Provisional;
Region: PRK09311"
/db_xref="CDD:181774"
misc_feature complement(9262..9849)
/locus_tag="Dester_0009"
/note="3,4-dihydroxy-2-butanone 4-phosphate synthase;
Region: DHBP_synthase; pfam00926"
/db_xref="CDD:216197"
misc_feature complement(8668..9246)
/locus_tag="Dester_0009"
/note="GTP cyclohydrolase II (RibA). GTP cyclohydrolase
II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the...;
Region: GTP_cyclohydro2; cd00641"
/db_xref="CDD:238348"
misc_feature complement(order(8923..8925,8932..8937,8941..8946,
8953..8958,8980..8982,8986..8988,9025..9027,9034..9039,
9058..9060,9064..9078,9082..9087,9091..9093,9145..9147,
9151..9153,9157..9159,9178..9186,9190..9192,9214..9234))
/locus_tag="Dester_0009"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238348"
misc_feature complement(order(8788..8790,8797..8805,8866..8868,
8872..8874,8908..8910,8926..8928,8935..8937,8947..8949,
8968..8979,9040..9042,9049..9051,9055..9057,9082..9084,
9088..9105))
/locus_tag="Dester_0009"
/note="active site"
/db_xref="CDD:238348"
gene complement(9881..10483)
/locus_tag="Dester_0010"
/db_xref="GeneID:10269218"
CDS complement(9881..10483)
/locus_tag="Dester_0010"
/EC_number="3.4.21.92"
/note="COGs: COG0740 Protease subunit of ATP-dependent Clp
protease;
HAMAP: ATP-dependent Clp protease proteolytic subunit;
InterPro IPR001907;
KEGG: saf:SULAZ_0379 ATP-dependent Clp protease,
proteolytic subunit ClpP;
PFAM: peptidase S14, ClpP;
PRIAM: Endopeptidase Clp;
SPTR: ATP-dependent Clp protease proteolytic subunit;
TIGRFAM: peptidase S14, ClpP;
PFAM: Clp protease;
TIGRFAM: ATP-dependent Clp protease, proteolytic subunit
ClpP"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease proteolytic subunit"
/protein_id="YP_004280730.1"
/db_xref="GI:325294216"
/db_xref="GeneID:10269218"
/translation="MEEILNQFVPIVIEQTGRGERAYDIYSRLLKDRIIMLGTPIDDH
VANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAA
SMGAVLLAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEIHAKEILRLKKMLNEILS
KHTGQSLRKIEKDTERDYFMSAEEAQKYGLIDKVLTRRGE"
misc_feature complement(9890..10465)
/locus_tag="Dester_0010"
/note="Protease subunit of ATP-dependent Clp proteases
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion];
Region: ClpP; COG0740"
/db_xref="CDD:223811"
misc_feature complement(9902..10414)
/locus_tag="Dester_0010"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature complement(order(9947..9949,9953..9955,10022..10024,
10028..10030,10034..10036,10043..10045,10085..10096,
10112..10114,10118..10120,10184..10186,10208..10210,
10220..10225,10232..10234,10241..10243,10253..10255,
10274..10276,10319..10321,10328..10333,10340..10345,
10370..10372,10376..10378))
/locus_tag="Dester_0010"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature complement(order(9953..9955,10100..10102,10175..10177))
/locus_tag="Dester_0010"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene complement(10543..12693)
/locus_tag="Dester_0011"
/db_xref="GeneID:10269219"
CDS complement(10543..12693)
/locus_tag="Dester_0011"
/EC_number="2.7.6.5"
/note="COGs: COG0317 Guanosine polyphosphate
pyrophosphohydrolase/synthetase;
InterPro IPR006674: IPR007685: IPR004095: IPR002912: IPR
004811: IPR003607;
KEGG: sul:SYO3AOP1_0616 (p)ppGpp synthetase I, SpoT/RelA;
PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD
subdomain; TGS; Amino acid-binding ACT;
PRIAM: GTP diphosphokinase;
SMART: Metal-dependent phosphohydrolase, HD domain;
SPTR: (P)ppGpp synthetase I, SpoT/RelA;
TIGRFAM: RelA/SpoT protein;
PFAM: HD domain; ACT domain; TGS domain; Region found in
RelA / SpoT proteins;
TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family"
/codon_start=1
/transl_table=11
/product="(p)ppGpp synthetase I SpoT/RelA"
/protein_id="YP_004280731.1"
/db_xref="GI:325294217"
/db_xref="GeneID:10269219"
/translation="MRSCKEIIEKVKEYRDSFDEELIIKAYNFAKERHEGQFRKSGEP
FFSHPAEVAYILAELRMDTPTIISGLLHDVVEDTDTTIEEIEKEFGKEVAFIVKGVTK
LEGYQFSSKEERDAESFRNLLISLAEDIRVLIVKLADRLHNMRTMESMKPESQKRNAK
ETLTIYAPLANRLGMYRIKNELEDLSLKYLDPETYNELEKKVREKKRKILPYLEEIIK
TVREKLKENGLKGDIQWRVKHIYGIYRKMVTKGIPFEEVYDVAGIRVITDTVGACYQI
LGIIHSIWIPVPGRIKDYIATPKPNMYQSLHTTVVGPKGQFIEFQIRTYEMHQVAEMG
IAAHWKYKEGGGALTETEKERFIWLRNLLEWVKEEKNPQEFIETVRNDLYSEDIYVFT
PKGDLKTLPVGSTPVDFAYAIHTSIGHRCKAAKVNGKLVPLNHILQSGDKVEIITSNE
ERPSRDWLNFVKTSKAKNAIKNFIRKEENERARKLGESLVDKMVRKFSEKSLNSIKEE
EIEDILKSFGYSNLDSALADVGYGKLDAEKLAKKLLKLPIETEKRKKKKKRVGKVSGI
KVDGIDNVMVSLGTCCHPLPGDRVIGVVNSGKGIVIHTANCIVAKQVKESSPGKLVKV
EFLPSDRVYNAKIRVTAEDRPGLLANVSSAIAKLKINITSVQTKSLSGRAVLDFIVQV
KSKEELQKVIHTIKQVKGVIAAKRIYREKVQKVM"
misc_feature complement(10573..12678)
/locus_tag="Dester_0011"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:223394"
misc_feature complement(12166..12618)
/locus_tag="Dester_0011"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:222047"
misc_feature complement(11695..12054)
/locus_tag="Dester_0011"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature complement(order(11698..11703,11725..11727,11731..11733,
11737..11739,11773..11775,11785..11787,11791..11793,
11797..11799,11812..11814,11818..11820,11902..11904,
11914..11919,11980..11982,11986..11988))
/locus_tag="Dester_0011"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature complement(order(11701..11703,11731..11733,11737..11739,
11773..11775,11785..11787,11791..11793,11797..11799,
11812..11814,11818..11820,11986..11988))
/locus_tag="Dester_0011"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature complement(order(11737..11739,11917..11919))
/locus_tag="Dester_0011"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
misc_feature complement(11353..11532)
/locus_tag="Dester_0011"
/note="TGS_RelA_SpoT: The RelA (SpoT) protein, also
referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during amino
acid starvation and thought to mediate the stringent
response. RelA contains a TGS domain, named after...;
Region: TGS_RelA_SpoT; cd01668"
/db_xref="CDD:133438"
misc_feature complement(10576..10785)
/locus_tag="Dester_0011"
/note="ACT domain found C-terminal of the RelA/SpoT
domains; Region: ACT_RelA-SpoT; cd04876"
/db_xref="CDD:153148"
gene 12761..13552
/locus_tag="Dester_0012"
/db_xref="GeneID:10269220"
CDS 12761..13552
/locus_tag="Dester_0012"
/EC_number="5.1.1.3"
/note="COGs: COG0796 Glutamate racemase;
HAMAP: Glutamate racemase;
InterPro IPR015942: IPR004391;
KEGG: tye:THEYE_A1384 glutamate racemase;
PFAM: Asp/Glu/hydantoin racemase;
PRIAM: Glutamate racemase;
SPTR: Glutamate racemase;
TIGRFAM: Glutamate racemase;
PFAM: Asp/Glu/Hydantoin racemase;
TIGRFAM: glutamate racemase"
/codon_start=1
/transl_table=11
/product="glutamate racemase"
/protein_id="YP_004280732.1"
/db_xref="GI:325294218"
/db_xref="GeneID:10269220"
/translation="MSERPIGIFDSGVGGLTVLRALRKKLPSEDLIYFGDTARVPYGT
KSPKTIIRYSIENTKLLKRFNVKMVIVACNTSSSYALEILKSEFSDVPILGVINPGAR
LAVSATKSGKVGVIGTEATIKSGAYRKAIHFINPSCLVFEKVCPLFVPLIEEGWLNDP
VTLEVARRYVLPLLGKGIDTLVLGCTHYPLIKDILLKICKNVTLIDSAQAIADEVAKA
LPSKKESGKGNVKILVSDKTDRFEKIAKMIMGNKIEIEEVSIDKE"
misc_feature 12761..13510
/locus_tag="Dester_0012"
/note="glutamate racemase; Provisional; Region: PRK00865"
/db_xref="CDD:234851"
gene 13539..14246
/locus_tag="Dester_0013"
/db_xref="GeneID:10269221"
CDS 13539..14246
/locus_tag="Dester_0013"
/EC_number="2.7.7.56"
/note="COGs: COG0689 RNase PH;
HAMAP: ribonuclease phosphorolytic, bacterial-type;
InterPro IPR001247: IPR015847: IPR002381;
KEGG: aoe:Clos_0557 ribonuclease PH;
PFAM: Exoribonuclease, phosphorolytic domain 1;
Exoribonuclease, phosphorolytic domain 2;
PRIAM: tRNA nucleotidyltransferase;
SPTR: Nucleoside-triphosphatase;
TIGRFAM: ribonuclease phosphorolytic, bacterial-type;
PFAM: 3' exoribonuclease family, domain 1; 3'
exoribonuclease family, domain 2;
TIGRFAM: ribonuclease PH"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_004280733.1"
/db_xref="GI:325294219"
/db_xref="GeneID:10269221"
/translation="MIRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASV
EEKIPPFLKGTGQGWITAEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRST
VDLTALGEITVWIDCDVIQADGGTRTASITGAFVALYRALEKIDKLDAVKNFVAAVSV
GIVGGEYLLDLNYEEDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGE
KGITKLILKQKEILGVK"
misc_feature 13542..14237
/locus_tag="Dester_0013"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 13569..14234
/locus_tag="Dester_0013"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(13599..13613,13641..13643,13647..13649,13653..13655,
13659..13661,13665..13667,13725..13727,13731..13733,
13737..13754,13758..13760,13767..13772,13794..13799,
13803..13808,13815..13817,13827..13829,13836..13838,
13878..13880,13884..13886,13890..13892,13896..13904,
14112..14126,14130..14132,14136..14153,14157..14159,
14166..14171,14178..14183,14190..14192)
/locus_tag="Dester_0013"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(13734..13736,13797..13799,13902..13919,14064..14066,
14082..14084)
/locus_tag="Dester_0013"
/note="active site"
/db_xref="CDD:206767"
gene 14246..14842
/locus_tag="Dester_0014"
/db_xref="GeneID:10269222"
CDS 14246..14842
/locus_tag="Dester_0014"
/EC_number="3.6.1.15"
/note="COGs: COG0127 Xanthosine triphosphate
pyrophosphatase;
HAMAP: Nucleoside-triphosphatase;
InterPro IPR002637: IPR020922;
KEGG: chy:CHY_0315 RdgB/HAM1 family non-canonical purine
NTP pyrophosphatase;
PFAM: Ham1-like protein;
PRIAM: Nucleoside-triphosphatase;
SPTR: Nucleoside-triphosphatase;
TIGRFAM: Ham1-like protein;
PFAM: Ham1 family;
TIGRFAM: non-canonical purine NTP pyrophosphatase,
rdgB/HAM1 family"
/codon_start=1
/transl_table=11
/product="nucleoside-triphosphatase rdgB"
/protein_id="YP_004280734.1"
/db_xref="GI:325294220"
/db_xref="GeneID:10269222"
/translation="MEIVFASKNKGKLREFQEKLSHFGIKVISIDQVKRLKEPPETGN
TFLENAYQKAVYYAKAIGKPVISEDSGLEVEALGGLPGVRSSRFAGENATDDMNNQKL
IDELKKRGLFESPARYVSFIVLAFPEGMGLWSEGEVKGKVITEPRGNGGFGYDPLFVP
EDYLKTMAELSLDEKNKISHRGKAIEKLVKLIKEMKNW"
misc_feature 14252..14815
/locus_tag="Dester_0014"
/note="NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against mutagenesis
by the base analog 6-N-hydroxylaminopurine (HAP) in E.
Coli and S. cerevisiae. A...; Region: HAM1; cd00515"
/db_xref="CDD:238285"
misc_feature order(14270..14272,14276..14281,14288..14290,14453..14461,
14498..14503,14597..14599,14699..14701,14705..14710,
14783..14788)
/locus_tag="Dester_0014"
/note="active site"
/db_xref="CDD:238285"
misc_feature order(14366..14374,14474..14479,14486..14488,14495..14497,
14504..14506)
/locus_tag="Dester_0014"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238285"
gene 14836..15078
/locus_tag="Dester_0015"
/db_xref="GeneID:10269223"
CDS 14836..15078
/locus_tag="Dester_0015"
/note="InterPro IPR003425;
KEGG: adg:Adeg_1018 protein of unknown function YGGT;
PFAM: Protein of unknown function YGGT;
SPTR: uncharacterized protein;
PFAM: YGGT family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280735.1"
/db_xref="GI:325294221"
/db_xref="GeneID:10269223"
/translation="MVKEIVHILIEFTIWFIIIGTLLTWIPPRSRNTTVWKVIDLTEK
FLRPIRSFVPPIGGIDISPIVAIIVLQIIDSIIRRL"
misc_feature <14899..15075
/locus_tag="Dester_0015"
/note="YGGT family; Region: YGGT; pfam02325"
/db_xref="CDD:216974"
gene 15081..15410
/locus_tag="Dester_0016"
/pseudo
/db_xref="GeneID:10269224"
gene 15457..15762
/locus_tag="Dester_0017"
/db_xref="GeneID:10269225"
CDS 15457..15762
/locus_tag="Dester_0017"
/note="COGs: COG1872 conserved hypothetical protein;
HAMAP: Protein of unknown function DUF167;
InterPro IPR003746;
KEGG: swo:Swol_0959 hypothetical protein;
PFAM: Protein of unknown function DUF167;
SPTR: UPF0235 protein Swol_0959;
manually curated;
PFAM: Uncharacterised ACR, YggU family COG1872;
TIGRFAM: conserved hypothetical protein TIGR00251"
/codon_start=1
/transl_table=11
/product="yggU"
/protein_id="YP_004280736.1"
/db_xref="GI:325294222"
/db_xref="GeneID:10269225"
/translation="MLQVKKKGEAIEIEVKVQPKASRNKIEKVEEGRLKIKVTVPPEG
GKANQKIIELLSKALKVPKRDIDIVKGETSRIKVVRIEGVTLANLQEKLGVKVVKIS"
misc_feature 15475..15705
/locus_tag="Dester_0017"
/note="Uncharacterized ACR, YggU family COG1872; Region:
DUF167; pfam02594"
/db_xref="CDD:217130"
gene 15839..16120
/locus_tag="Dester_0018"
/db_xref="GeneID:10269226"
CDS 15839..16120
/locus_tag="Dester_0018"
/note="COGs: COG0776 Bacterial nucleoid DNA-binding
protein;
InterPro IPR000119;
KEGG: cob:COB47_0604 histone family protein DNA-binding
protein;
PFAM: Histone-like bacterial DNA-binding protein;
SMART: Histone-like bacterial DNA-binding protein;
SPTR: Bacterial nucleoid protein Hbs;
PFAM: Bacterial DNA-binding protein;
TIGRFAM: integration host factor, beta subunit"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_004280737.1"
/db_xref="GI:325294223"
/db_xref="GeneID:10269226"
/translation="MTKSDLVAAIAEKAGIRKKDAEAALNGFIDVVTEALAKGEKVEI
RGFGTFLMKERAPRVARNPRTGEKVEVPAKLSPAFKPGKDLKEATEKVK"
misc_feature 15842..16102
/locus_tag="Dester_0018"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature order(15842..15847,15854..15856,15863..15865,15875..15877,
15917..15919,15926..15931,15938..15943,15953..15967,
15974..15979,15992..15994,16058..16063,16073..16075,
16079..16081,16100..16102)
/locus_tag="Dester_0018"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
misc_feature order(15842..15850,15914..15916,15959..15961,15965..15967,
15971..15976,15983..15985,15995..15997,16001..16006,
16010..16012,16019..16030,16058..16060,16070..16072,
16076..16078,16085..16087)
/locus_tag="Dester_0018"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
gene 16311..17063
/locus_tag="Dester_0019"
/db_xref="GeneID:10269227"
CDS 16311..17063
/locus_tag="Dester_0019"
/note="KEGG: zpr:ZPR_2872 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280738.1"
/db_xref="GI:325294224"
/db_xref="GeneID:10269227"
/translation="MRKIIFPLLALTLLGSSAYGVETEITVRAKAHDAKFIGSAIGGI
KVIVKDAYSGKVLDEGFIEGGTGNTKKLMKECLKRGEELSDEKTAKFVAKVDIDRPKK
VEIDLIGPLSAGLGALKLSKELWVIPGHDIKGDGVVFEFYGLVVYPVSPAPHQFFKVG
EKVKVKARIDMMCGCPIKKNGIWNADDFKVRAIIEKDGKFYKEIPLYFTGKTSTFEGE
FIPAEKGSYRITIFATDRRNNTGVGITSLAVM"
sig_peptide 16311..16370
/locus_tag="Dester_0019"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(17111..18400)
/locus_tag="Dester_0020"
/db_xref="GeneID:10269228"
CDS complement(17111..18400)
/locus_tag="Dester_0020"
/EC_number="6.3.4.4"
/note="COGs: COG0104 Adenylosuccinate synthase;
HAMAP: Adenylosuccinate synthetase;
InterPro IPR001114;
KEGG: saf:SULAZ_0329 adenylosuccinate synthetase;
PFAM: Adenylosuccinate synthetase;
PRIAM: Adenylosuccinate synthase;
SMART: Adenylosuccinate synthetase;
SPTR: Adenylosuccinate synthetase;
TIGRFAM: Adenylosuccinate synthetase;
PFAM: Adenylosuccinate synthetase;
TIGRFAM: adenylosuccinate synthase"
/codon_start=1
/transl_table=11
/product="adenylosuccinate synthetase"
/protein_id="YP_004280739.1"
/db_xref="GI:325294225"
/db_xref="GeneID:10269228"
/translation="MSTIAIVGTQWGDEGKGKIVDILSEKADYIVRFQGGNNAGHTVV
IDGTKYILHLLPSGILHDEKKCILGNGMVIDLEGLLNEIEFIKKIGMSVEERIFVSER
AHLILPYHKELDAASEKLKGNGSIGTTLKGIGPAYRDKAGRIGIRIADLRDEETFKEK
LKWNIREKELILKHVYNYDVSFDFDEVYSHTMRVYEKINPFVADTVSLLNQAIDTGKK
VLFEGAQATLLDIDVGTYPYVTSSNSSALGVTTGTGISPKKIEKIYGIAKAYTTRVGG
GPFPTELKNNVGELLRARGHEYGSTTGRPRRCGWLDLFALKFSKMVNDLDGLIITKLD
VLDAFDEIKVCIGYELNGEIIDYFPSTAKELSEVKPVYETLPGWKSKTTHIKRFEDLP
KETQNFLKFIEDYLEVEIPVVSTGPQRDETIPRHEIW"
misc_feature complement(17132..18394)
/locus_tag="Dester_0020"
/note="Adenylosuccinate synthetase; Region:
Adenylsucc_synt; smart00788"
/db_xref="CDD:197875"
misc_feature complement(17150..18394)
/locus_tag="Dester_0020"
/note="Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the...; Region: AdSS;
cd03108"
/db_xref="CDD:239382"
misc_feature complement(order(17150..17155,17399..17401,17405..17407,
18269..18271,18275..18283,18350..18358,18362..18364))
/locus_tag="Dester_0020"
/note="GDP-binding site [chemical binding]; other site"
/db_xref="CDD:239382"
misc_feature complement(order(18278..18280,18347..18349,18356..18358))
/locus_tag="Dester_0020"
/note="ACT binding site; other site"
/db_xref="CDD:239382"
misc_feature complement(order(17681..17683,17726..17728,18014..18016,
18023..18025,18287..18289))
/locus_tag="Dester_0020"
/note="IMP binding site; other site"
/db_xref="CDD:239382"
gene complement(18419..19687)
/locus_tag="Dester_0021"
/db_xref="GeneID:10269229"
CDS complement(18419..19687)
/locus_tag="Dester_0021"
/EC_number="6.1.1.21"
/note="COGs: COG0124 histidyl-tRNA synthetase;
HAMAP: ATP phosphoribosyltransferase regulatory subunit;
InterPro IPR002314: IPR004517;
KEGG: gbm:Gbem_0553 ATP phosphoribosyltransferase
regulatory subunit;
PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S),
conserved domain;
PRIAM: histidine--tRNA ligase;
SPTR: histidyl-tRNA synthetase;
TIGRFAM: histidyl-tRNA synthetase, class IIa,
PFAM: tRNA synthetase class II core domain (G, H, P, S and
T);
TIGRFAM: ATP phosphoribosyltransferase, regulatory
subunit"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase regulatory
subunit"
/protein_id="YP_004280740.1"
/db_xref="GI:325294226"
/db_xref="GeneID:10269229"
/translation="MRPTEIPKGFKTFLPEEAEKRERILKIMEEVLSLWGYRLLSPPT
IEYLSTFKIVDENLEEFSFKLVDRFTGKLMAIRPDFTPQVAKIVASSFKDDDPPFRFF
YKGKIFRDAGKDREIFQFGFEVIGVSEVEADAEVVSVVVNILEKLGLSSFQIDIGNSE
FLEGALEELKIPDREEFLKLLSHKDLSGIEIFLEERKISKDTRIKIEKLLELYGREEV
LDSAYQLFENSKSRAALKRLKEMFAILKSYGFEKKVIFDLSEKRGMEYHKGITFEVFH
PLYGFSLGSGGRYDGLMKKFGRNLPATGVALNVDALQELLEKKGLLKVEDSGDFYIID
LEKELHRAYELAKALRKLGYKVARDIVKRDLKSSLEIAFKKGFKNVIVLNRENDEHKC
TLFLSNKKTYQYAYVPKAEEIVKAAALEKI"
misc_feature complement(18560..19675)
/locus_tag="Dester_0021"
/note="ATP phosphoribosyltransferase regulatory subunit;
Provisional; Region: hisZ; PRK12292"
/db_xref="CDD:237043"
misc_feature complement(18758..19639)
/locus_tag="Dester_0021"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for...; Region: HisRS-like_core;
cd00773"
/db_xref="CDD:238396"
misc_feature complement(order(18773..18778,18827..18829,19274..19276,
19283..19285,19295..19297,19319..19321,19340..19345,
19415..19420,19427..19432,19445..19447,19451..19453,
19490..19495,19553..19573,19586..19588,19622..19624))
/locus_tag="Dester_0021"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238396"
misc_feature complement(19553..19579)
/locus_tag="Dester_0021"
/note="motif 1; other site"
/db_xref="CDD:238396"
misc_feature complement(order(18764..18766,18773..18775,18827..18829,
18842..18844,18887..18892,18896..18898,18902..18904,
19319..19321,19331..19333,19337..19339,19346..19348,
19361..19363,19445..19447,19451..19453))
/locus_tag="Dester_0021"
/note="active site"
/db_xref="CDD:238396"
misc_feature complement(19358..19366)
/locus_tag="Dester_0021"
/note="motif 2; other site"
/db_xref="CDD:238396"
misc_feature complement(18764..18778)
/locus_tag="Dester_0021"
/note="motif 3; other site"
/db_xref="CDD:238396"
gene complement(19690..20751)
/locus_tag="Dester_0022"
/db_xref="GeneID:10269230"
CDS complement(19690..20751)
/locus_tag="Dester_0022"
/EC_number="4.2.3.1"
/note="COGs: COG0498 Threonine synthase;
InterPro IPR001926: IPR004450;
KEGG: saf:SULAZ_1669 threonine synthase;
PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit;
PRIAM: Threonine synthase;
SPTR: Threonine synthase;
TIGRFAM: Threonine synthase;
PFAM: Pyridoxal-phosphate dependent enzyme;
TIGRFAM: threonine synthase"
/codon_start=1
/transl_table=11
/product="threonine synthase"
/protein_id="YP_004280741.1"
/db_xref="GI:325294227"
/db_xref="GeneID:10269230"
/translation="MKRWKGVIEEFREFLPVTDKTPVVTLLEGNTPLIEANNLAKEIK
PGIKLYLKFEGLNPTGSFKDRGMTMAVSKAVEEGAKAVICASTGNTSASAAAYAAKAG
LKAVVLIPEGKIALGKLSQAVMYGAEVVQIKGNFDEALEIVRKIGAEYPITIVNSINP
YRLQGQKTAAFEICEQLGRAPDYHFIPVGNAGNITAYWMGYKEYFEVGKIDSKPKMCG
WQAAGAAPIVLGHPVKNPETIATAIRIGNPASWEGAVNAAKESKGFIDMVTDEEILEA
YRLVARTEGIFCEPASAASIAGVIKSVREKDMFEKGDVIVCTLTGHGLKDPDTAISMG
VKPVTLPADKNEIVKHLGF"
misc_feature complement(19705..20742)
/locus_tag="Dester_0022"
/note="threonine synthase; Reviewed; Region: PRK06721"
/db_xref="CDD:136018"
misc_feature complement(19774..20730)
/locus_tag="Dester_0022"
/note="Threonine synthase is a pyridoxal phosphate (PLP)
dependent enzyme that catalyses the last reaction in the
synthesis of threonine from aspartate. It proceeds by
converting O-phospho-L-homoserine (OPH) into threonine and
inorganic phosphate. In plants; Region: Thr-synth_1;
cd01563"
/db_xref="CDD:107206"
misc_feature complement(order(19786..19788,19894..19899,19903..19911,
20224..20226,20314..20319,20353..20361,20365..20385,
20434..20436,20452..20457,20464..20466,20512..20514,
20581..20583,20653..20658,20671..20673))
/locus_tag="Dester_0022"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:107206"
misc_feature complement(order(19792..19794,20173..20187,20485..20487,
20563..20565))
/locus_tag="Dester_0022"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107206"
misc_feature complement(20563..20565)
/locus_tag="Dester_0022"
/note="catalytic residue [active]"
/db_xref="CDD:107206"
gene 20850..21722
/locus_tag="Dester_0023"
/db_xref="GeneID:10269231"
CDS 20850..21722
/locus_tag="Dester_0023"
/EC_number="4.2.1.52"
/note="COGs: COG0329 dihydrodipicolinate
synthase/N-acetylneuraminate lyase;
HAMAP: dihydrodipicolinate synthase;
InterPro IPR002220: IPR005263;
KEGG: dvl:Dvul_1296 dihydrodipicolinate synthase;
PFAM: dihydrodipicolinate synthetase;
SPTR: dihydrodipicolinate synthase;
TIGRFAM: dihydrodipicolinate synthase subfamily;
PFAM: dihydrodipicolinate synthetase family;
TIGRFAM: dihydrodipicolinate synthase"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_004280742.1"
/db_xref="GI:325294228"
/db_xref="GeneID:10269231"
/translation="MFEGIYAAIPTPFKNGKVDEGALIRHIEFLIENGVDGIVPCGTT
GESATLSYKEHEEVIALAVERCKGKIKVIAGTGSNSTEEAIELTKFAEKVGADGALLI
TPYYNKPNQEGLYLHFKAVAEAVSIPIVLYNVPGRTGVNMLPGTVARLSEIDNIVAIK
EATGNPNVATEIIELCGNKMTVISGDDLTFLPLLSVGAKGIISVTANIVPAKMVKMYK
SFVEGDIEKAMKLHFELYPLSKVLFVDTNPIPVKTALNFMGRMEKEFRLPLCPTTCEN
EEKIKAVLTKLGVL"
misc_feature 20853..21701
/locus_tag="Dester_0023"
/note="Dihydrodipicolinate synthase (DHDPS); Region:
DHDPS; cd00950"
/db_xref="CDD:188637"
misc_feature 20859..21710
/locus_tag="Dester_0023"
/note="dihydrodipicolinate synthase; Region: dapA;
TIGR00674"
/db_xref="CDD:129757"
misc_feature order(20973..20987,21084..21086,21090..21092,21159..21167,
21252..21254,21258..21260,21588..21593,21645..21647,
21651..21653)
/locus_tag="Dester_0023"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188637"
misc_feature order(20976..20981,21243..21245,21258..21260,21327..21329,
21402..21404,21408..21410)
/locus_tag="Dester_0023"
/note="active site"
/db_xref="CDD:188637"
misc_feature 21327..21329
/locus_tag="Dester_0023"
/note="catalytic residue [active]"
/db_xref="CDD:188637"
gene 21722..22750
/locus_tag="Dester_0024"
/db_xref="GeneID:10269232"
CDS 21722..22750
/locus_tag="Dester_0024"
/note="KEGG: pmx:PERMA_1519 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280743.1"
/db_xref="GI:325294229"
/db_xref="GeneID:10269232"
/translation="MAFTVNYRDLEKLFHYFEIREKDAKNMQFLGKILLPYEEEFAEA
FYNNLMKFEDIKEYLPESKLEKLKKTIRIWYRKLFSGKYDSEYLLYLLRVAKAHVEEG
IPPHYIIVAMNFVGRFCTRRVAKYFSERAHQFFNKKYEDEKNEICDSSQREIIKDFIL
DEVFERMEDLNRSLRKFLALNEDVLVSYYVDSELRTFINASKIERFIISFSKKFAIFM
DIAILLGLMFLAIFVIGLFGMDISHIFHGDLAHGLIAALGDLLILWTVLELLNSEIKF
MLGGELAVSAFVSVALAATIREALVVSLEHDKPIEFKLGIGALILILGIVFGIVKWFE
LKKQRRRG"
misc_feature 21746..>22093
/locus_tag="Dester_0024"
/note="superfamily containing globins and truncated
hemoglobins; Region: globin_like; cl00280"
/db_xref="CDD:241749"
misc_feature order(21857..21859,21884..21886,21893..21898,21920..21922,
21929..21934,22010..22015,22046..22048,22055..22057)
/locus_tag="Dester_0024"
/note="heme-binding site [chemical binding]; other site"
/db_xref="CDD:238515"
gene 22754..23536
/locus_tag="Dester_0025"
/db_xref="GeneID:10269233"
CDS 22754..23536
/locus_tag="Dester_0025"
/EC_number="1.3.1.26"
/note="COGs: COG0289 dihydrodipicolinate reductase;
HAMAP: dihydrodipicolinate reductase, bacterial/plant;
InterPro IPR000846: IPR011770;
KEGG: aae:aq_916 dihydrodipicolinate reductase;
PFAM: dihydrodipicolinate reductase;
PRIAM: dihydrodipicolinate reductase;
SPTR: dihydrodipicolinate reductase;
TIGRFAM: dihydrodipicolinate reductase, bacterial/plant;
PFAM: dihydrodipicolinate reductase, N-terminus;
dihydrodipicolinate reductase, C-terminus;
TIGRFAM: dihydrodipicolinate reductase"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_004280744.1"
/db_xref="GI:325294230"
/db_xref="GeneID:10269233"
/translation="MVKVAVAGAKGRMGNLIADLVLQDRDLKLVGVTERPDSDVIGGE
FSEGVNFYASLRDIPEKPDVVIDFTVPEATLRLLDEAKEIGAALVIGTTGFTDEEKRK
IEGTAKSVPVVFSPNMSLGVNLLFKLVAEVTKALKDKGYDIEIFEIHHRFKKDAPSGT
AMRLAEIIAENLGKDLDEIGVYGRRGIVGERKPDELGVLAARMGDVVGDHTVFFATLG
ERLELTHRATSRETFARGAVVAAKWVAGREAGLYTMFDVLGI"
misc_feature 22754..23533
/locus_tag="Dester_0025"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:234595"
misc_feature 22757..23107
/locus_tag="Dester_0025"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:216304"
misc_feature 23114..23527
/locus_tag="Dester_0025"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:218479"
gene 23815..24537
/locus_tag="Dester_0026"
/db_xref="GeneID:10269234"
CDS 23815..24537
/locus_tag="Dester_0026"
/EC_number="5.3.1.16"
/note="COGs: COG0106
phosphoribosylformimino-5-aminoimidazole carboxamide
ribonucleotide (ProFAR) isomerase;
HAMAP:1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase;
InterPro IPR006062: IPR006063;
KEGG: pmx:PERMA_1646 1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]imid
azole-4-carboxamide isomerase;
PFAM: histidine biosynthesis;
PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin
o)methylideneamino)imidazole-4-carboxamideisomerase;
SPTR:1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase;
TIGRFAM: phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase;
PFAM: histidine biosynthesis protein;
TIGRFAM: phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase"
/codon_start=1
/transl_table=11
/product="1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase"
/protein_id="YP_004280745.1"
/db_xref="GI:325294231"
/db_xref="GeneID:10269234"
/translation="MFEVIPAVDIKGGKCVRLYQGKAEEEKVYFENPVEVAKRWEAEG
AKRIHVVDLDGAFEGIPKNIAIVEEIVKSVCVPVQFGGGVRTIEAVDRLFEIGVDRVI
VGTVAVEKPELFEKMVKKYPGKIVLGIDAKGGMVTTRGWVEVTEIPAVELAKKYDEMD
IWGFVYTDISRDGTLTSPNFEEVEKFSNNVKKPVIASGGVSKVEDILKLSKIENVAGT
IVGKALYEGKVSLRKCLEKLKV"
misc_feature 23821..24522
/locus_tag="Dester_0026"
/note="HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA;
cd04732"
/db_xref="CDD:240083"
misc_feature 23824..24507
/locus_tag="Dester_0026"
/note="phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase; Region: TIGR00007"
/db_xref="CDD:232779"
misc_feature order(23839..23841,23959..23961,24202..24204)
/locus_tag="Dester_0026"
/note="catalytic residues [active]"
/db_xref="CDD:240083"
gene complement(24579..25469)
/locus_tag="Dester_0027"
/db_xref="GeneID:10269235"
CDS complement(24579..25469)
/locus_tag="Dester_0027"
/note="COGs: COG0275 S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis;
HAMAP: S-adenosyl-L-methionine-dependent
methyltransferase, MraW;
InterPro IPR002903;
KEGG: aae:aq_1875 S-adenosyl-methyltransferase MraW;
PFAM: S-adenosyl-L-methionine-dependent methyltransferase,
MraW;
SPTR: ribosomal RNA small subunit methyltransferase H;
TIGRFAM: S-adenosyl-L-methionine-dependent
methyltransferase, MraW;
PFAM: MraW methylase family;
TIGRFAM: S-adenosyl-methyltransferase MraW"
/codon_start=1
/transl_table=11
/product="ribosomal RNA small subunit methyltransferase H"
/protein_id="YP_004280746.1"
/db_xref="GI:325294232"
/db_xref="GeneID:10269235"
/translation="MEKEIYHPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEA
NPENRVIAIDRDEEAIERAMKRLERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFD
LGVSHFHLRGNRGFTVWEEQPLDMRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKF
ARKIAREIVRRRKIKPIETTLELAKIVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNRE
FQEIEEGIPEAANHVACSGRIVVITFHSLEDRLVKNIFRNLEGFKVITKKPVEPTEEE
IKKNPASRSAKLRAIERVCE"
misc_feature complement(24588..25454)
/locus_tag="Dester_0027"
/note="16S rRNA m(4)C1402 methyltranserfase; Provisional;
Region: PRK00050"
/db_xref="CDD:234597"
misc_feature complement(<25143..25373)
/locus_tag="Dester_0027"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(25164..25166,25227..25235,25305..25310,
25362..25373))
/locus_tag="Dester_0027"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 25628..25966
/locus_tag="Dester_0028"
/db_xref="GeneID:10269236"
CDS 25628..25966
/locus_tag="Dester_0028"
/note="COGs: COG0347 Nitrogen regulatory protein PII;
InterPro IPR002187;
KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II;
PFAM: Nitrogen regulatory protein PII;
SPTR: Nitrogen regulatory protein P-II;
PFAM: Nitrogen regulatory protein P-II"
/codon_start=1
/transl_table=11
/product="nitrogen regulatory protein P-II"
/protein_id="YP_004280747.1"
/db_xref="GI:325294233"
/db_xref="GeneID:10269236"
/translation="MKKIEAIIKPFKLDEVKDALTEIGITGMTISEVKGFGRQKGHTE
LYRGAEYVIDFIPKIKLEVIVPDESVEKVVEVIVNSAKTGRIGDGKIFILSVEDAVRI
RTGERGQEAL"
misc_feature 25628..25963
/locus_tag="Dester_0028"
/note="Nitrogen regulatory protein PII [Amino acid
transport and metabolism]; Region: GlnK; COG0347"
/db_xref="CDD:223424"
misc_feature 25637..25942
/locus_tag="Dester_0028"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene 25990..27273
/locus_tag="Dester_0029"
/db_xref="GeneID:10269237"
CDS 25990..27273
/locus_tag="Dester_0029"
/note="COGs: COG0004 Ammonia permease;
InterPro IPR001905;
KEGG: sul:SYO3AOP1_0046 ammonium transporter;
PFAM: Ammonium transporter;
SPTR: Ammonium transporter;
TIGRFAM: Ammonium transporter;
PFAM: Ammonium transporter Family;
TIGRFAM: ammonium transporter"
/codon_start=1
/transl_table=11
/product="ammonium transporter"
/protein_id="YP_004280748.1"
/db_xref="GI:325294234"
/db_xref="GeneID:10269237"
/translation="MKRILGVLLMALTPLAAMAEETPTLNSGDTAWMLVSTALVMLMT
PAGLALFYGGMTRSKNILNTIGMSFLAYCVASVVWVLWGYTLAFGPDIGGFIGGLEKV
FMKGVGVETLSGTIPEFLFAAFQGTFAAITVALASGAVIERLKFSTWFIFTVLWVTVV
YAPVAHWVWGGGFLGNDGALDFAGGTVVHINAGIAGLVMALLLGKRKGYGKTAFFPSS
VVLTVLGAALLWFGWFGFNAGSELAADGVAASAFLVTNVAASMAAISWIVTEWIMLRK
PTLLGAASGAVAGLVAITPAAGFVDVTGAIVIGLVAGILGWFGVFVLKKKLGYDDSLD
AFGVHGLCGVWGAIATGIFAVKTIGGTPGVLEGNLPQLWIQLKAVIATIVYSGIMTAV
VYFVSSILTGGARVSEEEEIEGLDSAIHGEKGFNL"
sig_peptide 25990..26046
/locus_tag="Dester_0029"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 26062..27270
/locus_tag="Dester_0029"
/note="Ammonia permease [Inorganic ion transport and
metabolism]; Region: AmtB; COG0004"
/db_xref="CDD:223083"
gene 27333..28355
/locus_tag="Dester_0030"
/db_xref="GeneID:10269238"
CDS 27333..28355
/locus_tag="Dester_0030"
/note="KEGG: aae:aq_113 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280749.1"
/db_xref="GI:325294235"
/db_xref="GeneID:10269238"
/translation="MVKRALTILTTTLLMAVAESGATEVKVDIPNIKLSGGISATGFN
ESKANADGSSTNDIKLTDAVIELSGGDDFGGFDIAVGSLVTPTVIGSVDAENQGNFGL
NRNNDKFGILWSYVSVTPIKGLQIDAGVLPTNVGYELAATYLNPNTTFGLVWNSQPFI
YKGVRATYTVTDDVQVYAEYDRGSELNGYSKDHAFAVGSIGSIKDINYTFTYFDYGNY
KNLVDFTLGYKYGNVQFGVNGDYQWLDSDSSKKGYGIALYVIPEFDKVSLPVRVEYVK
NKNGSRIYGFKDKGTYSFTVTPTYKFSDHTFVRAEYSYVKSNDKTAFNGSSHKGVASL
QFAFTF"
sig_peptide 27333..27395
/locus_tag="Dester_0030"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 27423..28352
/locus_tag="Dester_0030"
/note="Outer membrane protein family (DUF1597); Region:
DUF1597; pfam07642"
/db_xref="CDD:219494"
gene 28567..29805
/locus_tag="Dester_0031"
/db_xref="GeneID:10269239"
CDS 28567..29805
/locus_tag="Dester_0031"
/note="COGs: COG2200 FOG: EAL domain;
InterPro IPR001633;
KEGG: dae:Dtox_1033 diguanylate phosphodiesterase;
PFAM: Diguanylate phosphodiesterase, predicted;
SMART: Diguanylate phosphodiesterase, predicted;
SPTR: Diguanylate phosphodiesterase;
PFAM: EAL domain"
/codon_start=1
/transl_table=11
/product="diguanylate phosphodiesterase"
/protein_id="YP_004280750.1"
/db_xref="GI:325294236"
/db_xref="GeneID:10269239"
/translation="MEILKLLDLDDLFIYFQPVIFTKRKKVIGFEALARGRKDKKIIS
PLVLFELAEKKGIKIELDRLCRKIAFKEFKKFYHQNPNLMLFFNFDGSVIDLGVKYTG
FIFRIAKENNISPSNVVIEVTESEVKDSGALKDFVENYRKLGFLIALDDVGIEHSNLN
RIAELKPDILKIDRTLIKGINKEEYKSKVVKALAYMAKEIGSLTLAEGVETEKELLKT
MRLGIDLHQGFYFAKPQFPTKVFIEKELKDLQEKIADIDKLFHSLVKENFQKRETIHQ
RYKEIVMTYIKKLKNSKEEEFEKVLEKLVLKEKEIECLYILDSKGTLITRTVFNPKIS
LRNSPLFRPASFGENLCHREYVHSIVNGNSSFFITTEPYVSLATGNKIITASCKLKAS
NGKIFILCIDFKAKDLENIW"
misc_feature 28603..29271
/locus_tag="Dester_0031"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:238923"
misc_feature 29674..>29799
/locus_tag="Dester_0031"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:217211"
gene 29815..30471
/locus_tag="Dester_0032"
/db_xref="GeneID:10269240"
CDS 29815..30471
/locus_tag="Dester_0032"
/note="COGs: COG0204 1-acyl-sn-glycerol-3-phosphate
acyltransferase;
InterPro IPR002123: IPR004552;
KEGG: tal:Thal_0967 1-acyl-sn-glycerol-3-phosphate
acyltransferase;
PFAM: phospholipid/glycerol acyltransferase;
SMART: phospholipid/glycerol acyltransferase;
SPTR: phospholipid/glycerol acyltransferase;
TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase;
PFAM: Acyltransferase;
TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases"
/codon_start=1
/transl_table=11
/product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
/protein_id="YP_004280751.1"
/db_xref="GI:325294237"
/db_xref="GeneID:10269240"
/translation="MKSLTKKYPWVRKTSIYWFWLNTVGRFISNFCHLKVYGRENIPK
EGKVLLVANHKSYLDPPLVAYAVKKRPVFFMAKSELFEMPFLSSLIKHWGNAFPVKRG
RADLTALKTALEVINNGELVCIFPEGQRAPANSFARAKWGAGMVALKAKVPIVPCLIE
GSEKIIGKEKIISGWPKVTIRFGEPFYIDLEDKKENYQKAADVLMERIQELKVGNKSS
"
misc_feature 29824..30444
/locus_tag="Dester_0032"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:223282"
misc_feature 29905..30441
/locus_tag="Dester_0032"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature order(29974..29976,29983..29985,29989..29991,30040..30051,
30196..30204)
/locus_tag="Dester_0032"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene 30452..31351
/locus_tag="Dester_0033"
/db_xref="GeneID:10269241"
CDS 30452..31351
/locus_tag="Dester_0033"
/EC_number="1.17.1.2"
/note="COGs: COG0761 Penicillin tolerance protein;
HAMAP: LytB protein;
InterPro IPR003451;
KEGG: pmx:PERMA_0082 4-hydroxy-3-methylbut-2-enyl
diphosphate reductase;
PFAM: LytB protein;
PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
TIGRFAM: LytB protein;
PFAM: LytB protein;
TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate
reductase (IPP and DMAPP forming)"
/codon_start=1
/transl_table=11
/product="4-hydroxy-3-methylbut-2-enyl diphosphate
reductase"
/protein_id="YP_004280752.1"
/db_xref="GI:325294238"
/db_xref="GeneID:10269241"
/translation="METRVAKSAGFCWGVKRAVNIAVDAVRKNGKVYCLGELIHNKRE
IERLKKLGIVFIEDIDVLKKGNTVIIRSHGVSPKVIEFLKRKGLQIVDATCPFVKDVH
EKVMKLEKEGYPVLILGNPKHPEVIGIAGHVKSPMIMNTIEEIERLPKLSKLGVVCQT
TLNMDFFREAVFRLALKVKELKVYNTICSATSIRQSEAKKLALQVDVMLIVGGRNSSN
TTKLYQISKSVNSKSYHIESKEEIDSLWFENAQIIGITAGASTPQWVIEEVVNYVRLL
DKGGDISGRGVCQTIRKEFQTSK"
misc_feature 30452..31282
/locus_tag="Dester_0033"
/note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
Reviewed; Region: ispH; PRK01045"
/db_xref="CDD:234893"
misc_feature 30452..31273
/locus_tag="Dester_0033"
/note="4-Hydroxy-3-methylbut-2-enyl diphosphate reductase
IspH [Lipid metabolism]; Region: lytB; COG0761"
/db_xref="CDD:223832"
gene 31299..32315
/locus_tag="Dester_0034"
/db_xref="GeneID:10269242"
CDS 31299..32315
/locus_tag="Dester_0034"
/note="COGs: COG0539 ribosomal protein S1;
InterPro IPR003029;
KEGG: dal:Dalk_0933 ribosomal protein S1;
PFAM: ribosomal protein S1, RNA binding domain;
SPTR: 30S ribosomal protein S1;
PFAM: S1 RNA binding domain;
TIGRFAM: ribosomal protein S1"
/codon_start=1
/transl_table=11
/product="RNA binding S1 domain-containing protein"
/protein_id="YP_004280753.1"
/db_xref="GI:325294239"
/db_xref="GeneID:10269242"
/translation="MEGEFARLLEKSFKRLNNEIITGTVVKVTDREAFIDFGWKSEGI
VPLKELGYKPKIGEEIDVCVVEPETEEGYALLSVNCARSIKEWEKIASDLEKKGVIRG
RIKQRVRGGYKVAISQGITVFLPMSQVDIMPVTKPDDWLDREIEAKVLSVDRKRRSIV
ISRRKLLEEKRAKMRKETLEKLKEGDVVEGIVKNVVDFGIFVDVQGVDGLVHKSDISW
SGLKTPFDTAEIGDRIKVKIKKIDREKERLVLSIKDISEDPWLEVNKRYKVGTLVKGI
IVREDKSGYWIELPDDIAGYVPVDTLPKGIKLKYHHKYRFMVDRIDEEKRRVILKWQE
ERQK"
misc_feature 31353..31529
/locus_tag="Dester_0034"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture...; Region: S1_RPS1_repeat_ec1_hs1;
cd05687"
/db_xref="CDD:240192"
misc_feature order(31374..31376,31398..31400,31428..31430,31434..31436)
/locus_tag="Dester_0034"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240192"
misc_feature 31587..>31748
/locus_tag="Dester_0034"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture...; Region: S1_RPS1_repeat_ec2_hs2;
cd04465"
/db_xref="CDD:239911"
misc_feature order(31611..31613,31635..31637,31665..31667,31671..31673)
/locus_tag="Dester_0034"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239911"
misc_feature 31833..32162
/locus_tag="Dester_0034"
/note="general stress protein 13; Validated; Region:
PRK08059"
/db_xref="CDD:181215"
misc_feature 31848..>31991
/locus_tag="Dester_0034"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature order(31875..31877,31899..31901,31926..31928,31932..31934)
/locus_tag="Dester_0034"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature 32100..32288
/locus_tag="Dester_0034"
/note="Ribosomal protein S1-like RNA-binding domain;
Region: S1; smart00316"
/db_xref="CDD:197648"
gene 32291..32749
/locus_tag="Dester_0035"
/db_xref="GeneID:10269243"
CDS 32291..32749
/locus_tag="Dester_0035"
/note="COGs: COG0691 tmRNA-binding protein;
HAMAP: SsrA-binding protein;
InterPro IPR000037;
KEGG: trq:TRQ2_0694 SsrA-binding protein;
PFAM: SsrA-binding protein;
SPTR: SsrA-binding protein;
TIGRFAM: SsrA-binding protein;
PFAM: SmpB protein;
TIGRFAM: SsrA-binding protein"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_004280754.1"
/db_xref="GI:325294240"
/db_xref="GeneID:10269243"
/translation="MAGRTPEIKNKKAFYDYEILEKYEAGIELKGTEVKSLREGKANL
RDSFVRIENGEAFLFNAYIAPYTHGNLFNHEPNRKRKLLLHKSEIKRLLGKTQEKGLT
IVPLRMYFNKRGKVKVEIALVKGKKKYDKREAIKRRELEREAQKAMKYYR"
misc_feature 32318..32668
/locus_tag="Dester_0035"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(32360..32377,32381..32386,32390..32395,32402..32404,
32453..32455,32537..32554,32639..32641)
/locus_tag="Dester_0035"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene 32899..33387
/locus_tag="Dester_0036"
/db_xref="GeneID:10269244"
CDS 32899..33387
/locus_tag="Dester_0036"
/note="HAMAP: Uncharacterised protein family UPF0090,
bacteria;
InterPro IPR003728: IPR020790;
KEGG: dth:DICTH_1080 YlxS;
PFAM: Uncharacterised protein family UPF0090;
SPTR: ribosome maturation factor rimP;
PFAM: Uncharacterised BCR, YhbC family COG0779"
/codon_start=1
/transl_table=11
/product="ribosome maturation factor rimP"
/protein_id="YP_004280755.1"
/db_xref="GI:325294241"
/db_xref="GeneID:10269244"
/translation="MEERTKEIVDRVKELLFPILEEGGFELVDIEFVREPIGWVLRIY
ADRPEGGITISDCQWISERIGTLLDIEDLIPHAYNLEVSSPGLNRPLKNQRDFERNLG
TVVKIKTHEPMDNQRNFKGEVISASESAVVIHDVSRNAEVEIPFENIKSARIDIDSLF
NR"
misc_feature 32911..>33270
/locus_tag="Dester_0036"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:241733"
misc_feature 32920..33369
/locus_tag="Dester_0036"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:234627"
misc_feature 33154..33369
/locus_tag="Dester_0036"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature order(33220..33222,33226..33228,33247..33249,33253..33255,
33271..33273,33292..33294,33319..33327,33331..33336,
33340..33357)
/locus_tag="Dester_0036"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature order(33277..33279,33283..33285,33331..33333)
/locus_tag="Dester_0036"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 33404..34528
/locus_tag="Dester_0037"
/db_xref="GeneID:10269245"
CDS 33404..34528
/locus_tag="Dester_0037"
/note="COGs: COG0195 transcription elongation factor;
InterPro IPR013735: IPR003029: IPR010213;
KEGG: pmx:PERMA_0236 transcription termination factor
NusA;
PFAM: transcription factor NusA, N-terminal; ribosomal
protein S1, RNA binding domain;
SPTR: transcription termination factor NusA;
TIGRFAM: transcription termination factor NusA;
PFAM: NusA N-terminal domain; S1 RNA binding domain;
TIGRFAM: transcription termination factor NusA"
/codon_start=1
/transl_table=11
/product="NusA antitermination factor"
/protein_id="YP_004280756.1"
/db_xref="GI:325294242"
/db_xref="GeneID:10269245"
/translation="MESLGKTVELLCREKGISKEDVVKAVKVGIINAARKAGYKGHLV
VKIDEDGKDFGIFQEKTVVEDVKDIDYEISLEEAKELFGDSVKLGDKVLVEIKTEELG
RIAAKAAAQVIHEKISEAERKALYDYFKEKVGDIISGTVKEIKRNGDVILDLGRIVGI
LPKEEQISKEKYRIGDRVRAYIYDVVFDYKRYNRRKPSKIDDYPPPYVILSRTHPKFL
KRLMEIEIPEVADGLVEIKAVAREPGIRAKVAVDSKEEYIDPVGACIGVKGSRILPIS
RELSGEKIEIIRWTDDVAELVARVLSPAKVLQSESYEDENGELRVEVVVPDDQLSLAI
GKHGVNARLASKLVGQIVGIDIIKESDFRKLEELEALEEE"
misc_feature 33425..33772
/locus_tag="Dester_0037"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:219884"
misc_feature 33434..34495
/locus_tag="Dester_0037"
/note="transcription elongation factor NusA; Provisional;
Region: nusA; PRK12327"
/db_xref="CDD:237061"
misc_feature 33794..>33958
/locus_tag="Dester_0037"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:239902"
misc_feature order(33827..33829,33854..33856,33881..33883,33887..33889)
/locus_tag="Dester_0037"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239902"
misc_feature order(33833..33835,33848..33850,33875..33877,33881..33883)
/locus_tag="Dester_0037"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239902"
misc_feature 34130..34324
/locus_tag="Dester_0037"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 34283..34474
/locus_tag="Dester_0037"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:239049"
misc_feature 34406..34417
/locus_tag="Dester_0037"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239049"
gene 34525..35058
/locus_tag="Dester_0038"
/db_xref="GeneID:10269246"
CDS 34525..35058
/locus_tag="Dester_0038"
/note="InterPro IPR007393;
KEGG: ppd:Ppro_0962 hypothetical protein;
PFAM: Protein of unknown function DUF448;
SPTR: LSU ribosomal protein L7AE;
PFAM: Protein of unknown function (DUF448)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280757.1"
/db_xref="GI:325294243"
/db_xref="GeneID:10269246"
/translation="MRTCVGCKVKDETDKFIRYVEFEGKPLPDIARKLPGRGFNICPN
FNCIKNFVKKRFKNKVSPEEVYEYTVKALKDYFLHLLSLSHKTGVTVIGQDNIKRLGE
REGTLILALDLSEKTKKRLMKSSYLIVDNVFTSLEIGNALRKDRTIGAVFVERAGIGR
KLREIGEKLQKLINSRR"
misc_feature 34525..>34668
/locus_tag="Dester_0038"
/note="Protein of unknown function (DUF448); Region:
DUF448; pfam04296"
/db_xref="CDD:218012"
misc_feature order(34528..34530,34576..34578,34642..34644)
/locus_tag="Dester_0038"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:238173"
misc_feature 34744..35019
/locus_tag="Dester_0038"
/note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family;
Region: Ribosomal_L7Ae; cl00600"
/db_xref="CDD:241972"
gene 35060..36031
/locus_tag="Dester_0039"
/db_xref="GeneID:10269247"
CDS 35060..36031
/locus_tag="Dester_0039"
/note="COGs: COG0524 Sugar kinase ribokinase family;
InterPro IPR011611;
KEGG: mif:Metin_0950 PfkB domain protein;
PFAM: Carbohydrate/purine kinase;
SPTR: PfkB domain protein;
PFAM: pfkB family carbohydrate kinase"
/codon_start=1
/transl_table=11
/product="PfkB domain-containing protein"
/protein_id="YP_004280758.1"
/db_xref="GI:325294244"
/db_xref="GeneID:10269247"
/translation="MGDVLAFGSIVIDNVLVAEKFASINETVLAKKYRYTYGGAGANV
AVAVARLGVKSGIFAVSGYDFEKLNYEKALKEQGVDIRGIIKTKTFPMARSFIISKEK
SNDQIIYYYENKKETANLLFKNEKLALSLIKKYKIVHFSTGHFEFYYHLLKNNNFKTL
ISFDPGQETFSYSYRVVRLLKYANLLFMNNHEAKRIKEILKIKSIREIKGPKLICISL
GAHGAVVIYRGKLFRIPPVRPIRLVDPTGAGDSHRAGFLVALLKGYDVLTAGKIASTV
ASFTIEAEGAQTSLPTWNEVVKRYEHFFKEKFPKPKRNWEEIKAKLL"
misc_feature 35066..35962
/locus_tag="Dester_0039"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:223598"
misc_feature 35066..35920
/locus_tag="Dester_0039"
/note="Ribokinase-like subgroup A. Found in bacteria and
archaea, this subgroup is part of the ribokinase/pfkB
superfamily. Its oligomerization state is unknown at this
time; Region: ribokinase_group_A; cd01942"
/db_xref="CDD:238917"
misc_feature order(35186..35188,35798..35800,35807..35809)
/locus_tag="Dester_0039"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238917"
misc_feature order(35624..35626,35708..35710,35792..35794,35801..35806,
35813..35815,35879..35881,35888..35890)
/locus_tag="Dester_0039"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238917"
gene 36061..36837
/locus_tag="Dester_0040"
/db_xref="GeneID:10269248"
CDS 36061..36837
/locus_tag="Dester_0040"
/note="COGs: COG0426 flavoprotein;
KEGG: tko:TK1605 metallo-beta-lactamase superfamily
hydrolase;
SPTR: V-ATPase proteolipid;
PFAM: Metallo-beta-lactamase superfamily"
/codon_start=1
/transl_table=11
/product="metallo-beta-lactamase superfamily hydrolase"
/protein_id="YP_004280759.1"
/db_xref="GI:325294245"
/db_xref="GeneID:10269248"
/translation="MGNYFISPDLDLRKDTVLFDNGKHMVIYLGSRGVASSNEAVDVL
SYLIVNNNEAILIDPGGYHLFPLLVANVTKYISLEKIKYIYFCHQDPDVCGSLPMWKD
VCPKGKIVIGELWTRFLPHFGVEDMESSVHPIPMEGGHLNLGRVPLEIIPAHYMHSPN
HFSIYDPVSKFLFTGDIGIALGDIDYLVVKDWMEHMDKMYIPHRILMCSNKVTRGWAE
RIKNLEIKAILPQHGAIIPEQFVKYFLRFMENIKCGVDLV"
misc_feature 36100..>36834
/locus_tag="Dester_0040"
/note="Uncharacterized flavoproteins [Energy production
and conversion]; Region: FpaA; COG0426"
/db_xref="CDD:223503"
misc_feature 36193..36624
/locus_tag="Dester_0040"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:214854"
gene 36816..37547
/locus_tag="Dester_0041"
/db_xref="GeneID:10269249"
CDS 36816..37547
/locus_tag="Dester_0041"
/note="COGs: COG0840 methyl-accepting chemotaxis protein;
InterPro IPR004089;
KEGG: pho:PH1970 chemoreceptor protein;
PFAM: Chemotaxis methyl-accepting receptor, signalling;
SMART: Chemotaxis methyl-accepting receptor, signalling;
SPTR: 261aa long hypothetical chemoreceptor protein;
PFAM: methyl-accepting chemotaxis protein (MCP) signaling
domain"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_004280760.1"
/db_xref="GI:325294246"
/db_xref="GeneID:10269249"
/translation="MRGRSGLDSLIEALSGIERCHLSQKRMAETIESLVKEIEKVFLK
NNSVIAKDVESLKKISDDLKLFLEDFIPLMRELVKVSVDFKHLYESLDAMRKSLEDIE
KIASHTELIAINASIEAARAGEAGRNFAVVANEIRTMARDTFKSVGEVKEIEKEIDEK
ISRLRNSIDTIDKIKEDVDKLVSGINSIVSISDELDLIYRQQSRVINDIKGLSGISAG
IKKISKILFSVKKNIVTSIREFLSK"
misc_feature 36960..37403
/locus_tag="Dester_0041"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(36960..36962,36969..36974,36978..36983,36990..36992,
36999..37004,37011..37013,37020..37025,37032..37037,
37044..37046,37053..37058,37062..37067,37077..37079,
37083..37088,37095..37097,37104..37109,37116..37118,
37125..37127,37134..37139,37146..37148,37158..37160,
37167..37169,37188..37190,37200..37202,37209..37211,
37218..37223,37230..37232,37239..37244,37251..37256,
37260..37265,37272..37277,37314..37319,37323..37328,
37335..37337,37344..37349,37353..37358,37365..37370,
37377..37379,37386..37391,37398..37400)
/locus_tag="Dester_0041"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 37134..37235
/locus_tag="Dester_0041"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 37590..39386
/locus_tag="Dester_0042"
/db_xref="GeneID:10269250"
CDS 37590..39386
/locus_tag="Dester_0042"
/note="COGs: COG0481 Membrane GTPase LepA;
HAMAP: GTP-binding protein LepA;
InterPro IPR000795: IPR004161: IPR000640: IPR013842: IPR
005225: IPR006297;
KEGG: chy:CHY_0410 GTP-binding protein LepA;
PFAM: GTP-binding protein LepA, C-terminal; Protein
synthesis factor, GTP-binding; translation elongation
factor EFTu/EF1A, domain 2; translation elongation factor
EFG/EF2, C-terminal;
SPTR: GTP-binding protein lepA;
TIGRFAM: GTP-binding protein LepA; Small GTP-binding
protein;
PFAM: Elongation factor Tu domain 2; Elongation factor G
C-terminus; Elongation factor Tu GTP binding domain;
GTP-binding protein LepA C-terminus;
TIGRFAM: GTP-binding protein LepA; small GTP-binding
protein domain"
/codon_start=1
/transl_table=11
/product="GTP-binding protein lepA"
/protein_id="YP_004280761.1"
/db_xref="GI:325294247"
/db_xref="GeneID:10269250"
/translation="MNQELIRNFCIIAHIDHGKSTLADRLLEFTGTVSKRELKEQMLD
TLELERERGITIKLNAVRMNYEASDGKTYTMHLIDTPGHVDFTYEVSRSLSACEGALL
VIDATQGIEAQTIANFFLALDAGLEIIPVINKIDLPSANVEWVKEQIADVLGLDPDDA
ILASAKEGIGIKEILEAIVKKVPPPSGDVNKPLKALIFDSFYDNYKGVIPFIRVYDGE
IKPGMRIKLMSNNKEFEVVEVGTQSPNMIKLDSLKAGEVGWLAANIKNIEDTQVGDTI
TNAENPTKEPCPGFRPAKPMVFAGLYPIDSDRYEDLKEALEKLKLNDAALFFEPETSA
ALGFGFRCGFLGLLHMEVIKERLEREFGLELIATAPSVVYKVYLSDGTVIDVQNPAEM
PPKEKIERIEEPYISASIITPAEYVGSIMQLCQDRRGIQTGFTYLDENRVELRYDMPL
SEILFDFFDKLKSVSRGYASFDYELAGYKPSELVKLDILINGKPVDALSVIVHESKAY
QRGRQLVDKLKEIIPRQLFEVAIQAAIGNKIIARSNVKALRKDVLAKCYGGDVTRKKK
LLEKQKEGKKKMKMLGKVEVPQEAFLAVLKVE"
misc_feature 37590..39383
/locus_tag="Dester_0042"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:235462"
misc_feature 37608..38144
/locus_tag="Dester_0042"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 37626..37649
/locus_tag="Dester_0042"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(37629..37631,37635..37637,37647..37652,37659..37661,
37668..37673,37764..37769,37836..37841,37908..37913,
38019..38021,38031..38033)
/locus_tag="Dester_0042"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(37635..37652,37986..37991,37995..37997,38079..38087)
/locus_tag="Dester_0042"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 37731..37766
/locus_tag="Dester_0042"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 37752..37754
/locus_tag="Dester_0042"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 37824..37835
/locus_tag="Dester_0042"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 37830..37886
/locus_tag="Dester_0042"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 37986..37997
/locus_tag="Dester_0042"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 38079..38087
/locus_tag="Dester_0042"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 38166..38423
/locus_tag="Dester_0042"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:239670"
misc_feature 38811..39035
/locus_tag="Dester_0042"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:239680"
misc_feature 39057..39380
/locus_tag="Dester_0042"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 39477..40630
/locus_tag="Dester_0043"
/pseudo
/db_xref="GeneID:10269251"
gene 40634..41230
/locus_tag="Dester_0044"
/db_xref="GeneID:10269252"
CDS 40634..41230
/locus_tag="Dester_0044"
/note="COGs: COG2199 FOG: GGDEF domain;
InterPro IPR000160;
KEGG: aae:aq_1455 hypothetical protein;
PFAM: Diguanylate cyclase, predicted;
SMART: Diguanylate cyclase, predicted;
SPTR: uncharacterized protein;
TIGRFAM: Diguanylate cyclase, predicted;
PFAM: GGDEF domain;
TIGRFAM: diguanylate cyclase (GGDEF) domain"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase"
/protein_id="YP_004280762.1"
/db_xref="GI:325294248"
/db_xref="GeneID:10269252"
/translation="MIEKVKVNLLFNYLEELTRKYEETFELKERLLKELKEKAMYDSL
TGTYNRHILLDFLEKELKRLERTKKGKIYFVFMDLDKFKLVNDVYGHKKGDEVLKKVA
KIIKDSFREYDIVSRFGGDEFVVVVKDDSGKSLNSILQRIKEKIESAFSSYGISISYG
VAVAPDEGLNSNTLLQLADKRMYEMKKKKRRENEEKNL"
misc_feature 40748..41170
/locus_tag="Dester_0044"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature 40751..41170
/locus_tag="Dester_0044"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(40865..40867,40994..40996)
/locus_tag="Dester_0044"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(40880..40882,40889..40894,40904..40906,40916..40918,
40982..40984,40988..40999)
/locus_tag="Dester_0044"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(40970..40972,41054..41056)
/locus_tag="Dester_0044"
/note="I-site; other site"
/db_xref="CDD:143635"
gene complement(41244..41645)
/locus_tag="Dester_0045"
/db_xref="GeneID:10269253"
CDS complement(41244..41645)
/locus_tag="Dester_0045"
/note="COGs: COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain;
InterPro IPR001789;
KEGG: pmx:PERMA_0739 chemotactic response regulator CheY;
PFAM: Signal transduction response regulator, receiver
domain;
SMART: Signal transduction response regulator, receiver
domain;
SPTR: Chemotactic response regulator CheY;
PFAM: Response regulator receiver domain"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_004280763.1"
/db_xref="GI:325294249"
/db_xref="GeneID:10269253"
/translation="MAMPDQNINILTVDDMAAMRKILKTLLAQLGYKNVDEAEDGKQA
LEILKKNPNKYGLVITDWNMPNMTGIELVQEIRKDPELKNIPILMVTAEAKKENVLMA
IKAGVNNYIVKPFTAETLKEKIEKIFSSLNK"
misc_feature complement(41253..41639)
/locus_tag="Dester_0045"
/note="chemotaxis regulatory protein CheY; Provisional;
Region: PRK10610"
/db_xref="CDD:170568"
misc_feature complement(41262..41615)
/locus_tag="Dester_0045"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(41304..41309,41316..41318,41373..41375,
41439..41441,41463..41465,41601..41606))
/locus_tag="Dester_0045"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(41463..41465)
/locus_tag="Dester_0045"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(41439..41447,41451..41456))
/locus_tag="Dester_0045"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(41301..41309)
/locus_tag="Dester_0045"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene complement(41669..42634)
/locus_tag="Dester_0046"
/db_xref="GeneID:10269254"
CDS complement(41669..42634)
/locus_tag="Dester_0046"
/note="COGs: COG0835 Chemotaxis signal transduction
protein;
InterPro IPR002545: IPR001789;
KEGG: pmx:PERMA_0740 chemotactic response regulator CheV;
PFAM: Signal transduction response regulator, receiver
domain; CheW-like protein;
SMART: Signal transduction response regulator, receiver
domain; CheW-like protein;
SPTR: Chemotactic response regulator CheV;
PFAM: CheW-like domain; Response regulator receiver
domain"
/codon_start=1
/transl_table=11
/product="response regulator receiver modulated CheW
protein"
/protein_id="YP_004280764.1"
/db_xref="GI:325294250"
/db_xref="GeneID:10269254"
/translation="MARKKELLPKILETGANELEIIDFRMYEVLEDGETYEWILGVNV
AKVKEVIFKPKDIIKAPGLPPEAEGLAKIRGQMIPIISLAKWMKIKEPSGAGKYVIVM
EFLRETVGVIVHEAKRIRRIRWADIKRPPKSIDEKLGGKVVGVVEIEDNKLLLLLDFE
GILDELGMIKIFGMEELEKVEGIEKKGHFKILILDDSPVARKIIRKILENDGHTVFEA
QNGIEALQMLHKWLEEAKTTGRDITDYVQLIISDIEMPGMDGLTFTRKVKEDTEFSKI
PVIINTSLSDRANVDKSRFVGADAHLVKFDAPDLVKLVHQHVISK"
misc_feature complement(<42233..42622)
/locus_tag="Dester_0046"
/note="Chemotaxis signal transduction protein [Cell
motility and secretion / Signal transduction mechanisms];
Region: CheW; COG0835"
/db_xref="CDD:223905"
misc_feature complement(41693..42064)
/locus_tag="Dester_0046"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(41684..42061)
/locus_tag="Dester_0046"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:238088"
misc_feature complement(order(41723..41725,41732..41734,41789..41791,
41855..41857,41879..41881,42047..42052))
/locus_tag="Dester_0046"
/note="active site"
/db_xref="CDD:238088"
misc_feature complement(41879..41881)
/locus_tag="Dester_0046"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:238088"
misc_feature complement(order(41855..41863,41867..41872))
/locus_tag="Dester_0046"
/note="intermolecular recognition site; other site"
/db_xref="CDD:238088"
misc_feature complement(order(41720..41722,41723..41725))
/locus_tag="Dester_0046"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238088"
gene complement(42638..44515)
/locus_tag="Dester_0047"
/db_xref="GeneID:10269255"
CDS complement(42638..44515)
/locus_tag="Dester_0047"
/note="COGs: COG0840 methyl-accepting chemotaxis protein;
InterPro IPR004089;
KEGG: pmx:PERMA_0738 methyl-accepting chemotaxis protein
signaling domain protein;
PFAM: Chemotaxis methyl-accepting receptor, signalling;
SMART: Chemotaxis methyl-accepting receptor, signalling;
SPTR: methyl-accepting chemotaxis protein signaling domain
protein;
PFAM: methyl-accepting chemotaxis protein (MCP) signaling
domain"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis sensory transducer"
/protein_id="YP_004280765.1"
/db_xref="GI:325294251"
/db_xref="GeneID:10269255"
/translation="MFCSWEKKEIKRLEEELNSLKQKYQNLQKAYDACEKEKESLKEK
LSEFSQKNLELSKEIEKLKKEKEVLDNDVYMYQQILDSLMEEAIFIATPDFKPGRAGN
EIIYANRKAFEIANKWRDAFISEFGIDPDKLIGASIHLFHKDPERVKELLKATKPGEH
KKNADIPVGPYIMASYRHAIANKDGSIRCYIATWKDATPEREIEKQLEKAQKMFLSNL
KATKQSLVNNLATIVAVSVAIKELQETLKLSENQINSTQEIESAVNKLVEVSDKLLEN
YQFVLEELGIAEKKTLESIEQMQYIKDITRDMEDVVKALQAQTEQIDRVVEVITSITE
QTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTNKSATEIREVVKNMREQMNKT
AEITDKSVRAVDDGMNIFKENKEIYNKLKGASEEVLGVINKLTDFVNTQKINIGDIVK
NIQKSNEYINSIKEQASKIIKVAEKTDTSLHKIWETFSLVDTGDAAILLDRLAELGKF
TAKINEIIKGKLVDDINPDISIIAEVDNLIRILGPQDKEISRIIRKYPEIERYFNSLE
ERLFDIKLLLKELFLAISSDDIKEIIEKEGEITSITNEISSQLIEAISIVLLTLKQER
K"
misc_feature complement(43922..44254)
/locus_tag="Dester_0047"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:222120"
misc_feature complement(43157..43747)
/locus_tag="Dester_0047"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(43163..43165,43172..43177,43184..43186,
43193..43198,43202..43207,43214..43219,43223..43228,
43235..43237,43244..43249,43256..43258,43265..43270,
43277..43282,43286..43291,43298..43300,43307..43312,
43319..43321,43328..43333,43370..43375,43382..43387,
43391..43396,43403..43408,43415..43417,43424..43429,
43436..43438,43445..43447,43457..43459,43478..43480,
43487..43489,43499..43501,43508..43513,43520..43522,
43529..43531,43538..43543,43550..43555,43562..43564,
43571..43576,43580..43582,43592..43597,43601..43606,
43613..43615,43622..43627,43634..43639,43646..43648,
43655..43660,43667..43669,43676..43681,43685..43690,
43697..43699,43706..43711,43718..43723))
/locus_tag="Dester_0047"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(43412..43513)
/locus_tag="Dester_0047"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(44517..45020)
/locus_tag="Dester_0048"
/db_xref="GeneID:10269256"
CDS complement(44517..45020)
/locus_tag="Dester_0048"
/note="COGs: COG0835 Chemotaxis signal transduction
protein;
InterPro IPR002545;
KEGG: nis:NIS_0603 purine-binding chemotaxis protein CheW;
PFAM: CheW-like protein;
SMART: CheW-like protein;
SPTR: Purine-binding chemotaxis protein CheW;
PFAM: CheW-like domain"
/codon_start=1
/transl_table=11
/product="CheW protein"
/protein_id="YP_004280766.1"
/db_xref="GI:325294252"
/db_xref="GeneID:10269256"
/translation="MNEKINEEMNIVGVEDLIGEIKEKEIQVIAFRLKDELVSVPIEQ
VVEITNNRDITPVPKAPSYVIGVMNLRGKIVPVINLKEHLGIKDEIPEDVYTKNKIVI
VETPKGEVGIIVDEIVGSIKFLEGDVLPEPIGTIGIDVKYISGVVQLEGELLIILNIE
SIFNQEV"
misc_feature complement(44577..44981)
/locus_tag="Dester_0048"
/note="Chemotaxis signal transduction protein [Cell
motility and secretion / Signal transduction mechanisms];
Region: CheW; COG0835"
/db_xref="CDD:223905"
gene complement(45017..46993)
/locus_tag="Dester_0049"
/db_xref="GeneID:10269257"
CDS complement(45017..46993)
/locus_tag="Dester_0049"
/note="COGs: COG0643 Chemotaxis protein histidine kinase
and related kinase;
InterPro IPR008207: IPR004105: IPR003594: IPR002545;
KEGG: pmx:PERMA_0742 chemotaxis protein CheA;
PFAM: ATPase-like, ATP-binding domain; Signal transduction
histidine kinase, phosphotransfer (Hpt) domain; Signal
transduction histidine kinase, subgroup, homodimeric;
CheW-like protein;
SMART: CheW-like protein; Signal transduction histidine
kinase, phosphotransfer (Hpt) domain; ATPase-like,
ATP-binding domain;
SPTR: Chemotaxis protein CheA;
PFAM: CheW-like domain; histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase; Signal transducing histidine
kinase, homodimeric domain; Hpt domain"
/codon_start=1
/transl_table=11
/product="CheA signal transduction histidine kinase"
/protein_id="YP_004280767.1"
/db_xref="GI:325294253"
/db_xref="GeneID:10269257"
/translation="MKANIPEELKEILEEFLVEAEEILENLDQDLIDLENNPTDKDLL
NKIFRGMHTLKGGAGFLNLTPIVELAHRIEDIFNKLRNDEMTLTTELMDIILEGIDHL
KLAIQMLKESEELPDMEDIESVLKKLDTALKGEFVESPEVEVPSTEDAPQESELEFVE
DVSDELKELIKKFPGKNLADLLEEIILMPPDERPMEVIPEIEKLIEEGKDIQDIVKVK
KKEEKTTAPKQKAEEKPQPPTVEERKEKTPSQSMQKKAVSEKKTTETIRIDVERVENL
MNLVGEIVLDRNRILRVTSEVDKECRSESVEKLVEAVTSLDRTVSDLQVAVMKLRMQP
IKKIFSKFPRLVRDLARKLNKKVQLIIEGEDTELDRSILDKLEDPLIHLVRNALDHGI
EPPEERVAKGKPEVGTVKLFAYHEGDHIIVGIQDDGKGIDPEKVKQKAIEKGLITPEQ
AAQMSEKEAYELIFMPGFSTAEKVSDVSGRGVGMDVVASTIHSLRGSIEINSELGKGT
TIILKLPLTVAIIRTLMISVKDQVFAVPLHSVVEIVRYDEKNVKEVGSFKSFMLRDEV
LPLFSLNELLELSDENEKNFVVIVKVGERLIAVSIEELFGEEEIVIKSLGELLSDIPG
IAGATIAGDGKVVLILDLNSLLSDYKVKLIGVGR"
misc_feature complement(46673..46918)
/locus_tag="Dester_0049"
/note="Histidine Phosphotransfer domain, involved in
signalling through a two part component systems in which
an autophosphorylating histidine protein kinase serves as
a phosphoryl donor to a response regulator protein; the
response regulator protein is...; Region: HPT; cd00088"
/db_xref="CDD:238041"
misc_feature complement(order(46772..46774,46781..46783,46826..46831,
46838..46840))
/locus_tag="Dester_0049"
/note="putative binding surface; other site"
/db_xref="CDD:238041"
misc_feature complement(46838..46840)
/locus_tag="Dester_0049"
/note="active site"
/db_xref="CDD:238041"
misc_feature complement(45056..>46234)
/locus_tag="Dester_0049"
/note="Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal transduction
mechanisms]; Region: CheA; COG0643"
/db_xref="CDD:223716"
misc_feature complement(46004..46207)
/locus_tag="Dester_0049"
/note="Signal transducing histidine kinase, homodimeric
domain; Region: H-kinase_dim; pfam02895"
/db_xref="CDD:217273"
misc_feature complement(45452..45868)
/locus_tag="Dester_0049"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(order(45464..45466,45470..45475,45488..45490,
45494..45496,45542..45553,45701..45706,45710..45712,
45716..45718,45722..45724,45827..45829,45836..45838,
45848..45850))
/locus_tag="Dester_0049"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(45836..45838)
/locus_tag="Dester_0049"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(45545..45547,45551..45553,45704..45706,
45710..45712))
/locus_tag="Dester_0049"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature complement(45059..45442)
/locus_tag="Dester_0049"
/note="CheA regulatory domain; CheA is a histidine protein
kinase present in bacteria and archea. Activated by the
chemotaxis receptor a histidine phosphoryl group from CheA
is passed directly to an aspartate in the response
regulator CheY. This signalling...; Region: CheA_reg;
cd00731"
/db_xref="CDD:238373"
gene complement(47003..47536)
/locus_tag="Dester_0050"
/db_xref="GeneID:10269258"
CDS complement(47003..47536)
/locus_tag="Dester_0050"
/note="KEGG: pmx:PERMA_0743 myosin-2 heavy chain, non
muscle;
SPTR: myosin-2 heavy chain, non muscle"
/codon_start=1
/transl_table=11
/product="myosin-2 heavy chain, non muscle"
/protein_id="YP_004280768.1"
/db_xref="GI:325294254"
/db_xref="GeneID:10269258"
/translation="MEKSLLQELKELLDLIESFKSEISQISAQKAGFKAINHHIDIAI
LESEEATKKIIDFIGSSLEAVQESLELISQIKVKEDSTEKAKRLRELLSATTSSLINA
LTLLEFQDILAQRLLKVKNFLSDIEKSILKIAILAGIEETDKKKRGELEKKLEELEWK
KEISQNEVDEIMKQFGL"
gene 47626..47835
/locus_tag="Dester_0051"
/db_xref="GeneID:10269259"
CDS 47626..47835
/locus_tag="Dester_0051"
/note="PFAM: AT hook motif"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280769.1"
/db_xref="GI:325294255"
/db_xref="GeneID:10269259"
/translation="MPKLRKKPILSGMKAKRLNFHKVLNLSKTYMNRRGQAVLVYLYP
FKTKRGRPKKYPDEIILTLLFLQVA"
gene 47863..48603
/locus_tag="Dester_0052"
/db_xref="GeneID:10269260"
CDS 47863..48603
/locus_tag="Dester_0052"
/note="InterPro IPR002559;
KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein;
PFAM: transposase, IS4-like;
SPTR: transposase IS4 family protein;
PFAM: transposase DDE domain"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_004280770.1"
/db_xref="GI:325294256"
/db_xref="GeneID:10269260"
/translation="MAVQIFGRENIPDFSTYYYRLKQLPSILLVNFLNFVSRRLLGKY
HKELRFLIIDGTGFKYNEIYPLKILRGKEIKEVKSHVKVVVLSVHLKDGKRFILTALP
GESYASEVKLGEKIVRWLNERRFIWRALKGKPFLGDKAYDSIKFIELVLLAGLKPYIK
VRETLRKGIKSEIRLKCKELLESDEIYRFRGLIESIFGEVKQDVGSYERTKSFHIAQL
FVLAKFILFNMGVLFFVWMIFQTLSEFD"
misc_feature <48250..48549
/locus_tag="Dester_0052"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
gene complement(48853..49347)
/locus_tag="Dester_0053"
/db_xref="GeneID:10269261"
CDS complement(48853..49347)
/locus_tag="Dester_0053"
/note="InterPro IPR001163;
KEGG: dae:Dtox_3018 RNA chaperone Hfq;
PFAM: Like-Sm ribonucleoprotein (LSM) domain;
SPTR: RNA chaperone Hfq;
PFAM: LSM domain;
TIGRFAM: RNA chaperone Hfq"
/codon_start=1
/transl_table=11
/product="Sm ribonucleoprotein-like protein"
/protein_id="YP_004280771.1"
/db_xref="GI:325294257"
/db_xref="GeneID:10269261"
/translation="MKRYKTLEDAQIELIELLEEEGEFRGSIEELAERLSVKPENIKP
LLQLMKSAGDIVYEEIEDELIIRPATFIPLLPPTPTEEQKEEIEKKLSEGYRLIASSY
MGGVQSRELRQAMGKRIIVFFRNGSRLEGRLKGFDRFTLKMRNYRGNILVYKHAISTI
VYKT"
misc_feature complement(48865..49032)
/locus_tag="Dester_0053"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature complement(order(48865..48906,48928..48933,48937..48945,
48967..48981,49018..49020,49027..49032))
/locus_tag="Dester_0053"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature complement(order(48916..48969,48973..48993))
/locus_tag="Dester_0053"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature complement(order(48865..48867,48871..48876,48898..48900,
48919..48921,48958..48972,48982..48984))
/locus_tag="Dester_0053"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature complement(48868..48903)
/locus_tag="Dester_0053"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene complement(49357..49893)
/locus_tag="Dester_0054"
/db_xref="GeneID:10269262"
CDS complement(49357..49893)
/locus_tag="Dester_0054"
/note="InterPro IPR001163: IPR005001;
KEGG: saf:SULAZ_0969 RNA chaperone Hfq;
PFAM: Like-Sm ribonucleoprotein (LSM) domain;
SPTR: RNA chaperone Hfq;
TIGRFAM: Host factor Hfq;
PFAM: LSM domain;
TIGRFAM: RNA chaperone Hfq"
/codon_start=1
/transl_table=11
/product="RNA chaperone Hfq"
/protein_id="YP_004280772.1"
/db_xref="GI:325294258"
/db_xref="GeneID:10269262"
/translation="MASQSKAEKVKIWLREYLSEFGEYSGTLEELAHLANSTPYLVKK
ALTELEEESLVKSESRRGKGLIITLLSQEEKVEDTHEEQKEEVEAKEEKETQIIEKVE
EEKTKEEPEKKKKEKKLSLQDRVLTSLIGKDITVFLISGTRLEGKLLDFDNFTLSMTA
PKGKSLVYKHAIATIIFE"
misc_feature complement(49363..49536)
/locus_tag="Dester_0054"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature complement(order(49363..49407,49429..49434,49438..49446,
49468..49482,49519..49521,49528..49536))
/locus_tag="Dester_0054"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature complement(order(49417..49470,49474..49494))
/locus_tag="Dester_0054"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature complement(order(49366..49368,49372..49377,49399..49401,
49420..49422,49459..49473,49483..49485))
/locus_tag="Dester_0054"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature complement(49369..49404)
/locus_tag="Dester_0054"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene complement(50005..51354)
/locus_tag="Dester_0055"
/db_xref="GeneID:10269263"
CDS complement(50005..51354)
/locus_tag="Dester_0055"
/EC_number="6.3.4.14"
/note="COGs: COG4770 Acetyl/propionyl-CoA carboxylase
alpha subunit;
InterPro IPR005481: IPR005479: IPR005482: IPR004549;
KEGG: saf:SULAZ_0507 acetyl-CoA carboxylase, biotin
carboxylase subunit;
PFAM: Carbamoyl phosphate synthetase, large subunit,
ATP-binding; Carbamoyl phosphate synthase, large subunit,
N-terminal; Biotin carboxylase, C-terminal;
PRIAM: Biotin carboxylase;
SPTR: Acetyl-CoA carboxylase, biotin carboxylase subunit;
TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase;
PFAM: Carbamoyl-phosphate synthase L chain, ATP binding
domain; Biotin carboxylase C-terminal domain;
Carbamoyl-phosphate synthase L chain, N-terminal domain;
TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase
subunit"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxylase"
/protein_id="YP_004280773.1"
/db_xref="GI:325294259"
/db_xref="GeneID:10269263"
/translation="MFKKVLIANRGEIAVRIIRTCRELGIKTVAIYSTADRDSLHVFL
ADEAVCIGGPRPQESYLNIPSIISAAEITGADAIHPGYGFLSENPGFAEICTACGMKF
IGPSPETMVLMGDKAKAREVAIKAGVPVVPGSGIIKNVQEALKVCEEIGYPVLVKAAH
GGGGRGMRLITSSKEAKTLIVTAMAEAEAAFGSGEVYIEKYIKNPRHIEIQVVADQFG
NVVTFGERECSLQRRHQKVLEEAPSPFVDEDLRNKLSDAAKKIAEFINYEGAGTVEFL
VDKDKNFYFIEMNTRIQVEHPVTEFVTEKDLIAKQIMAAAGEKLNISDVKLKGHAIEF
RITCEDYEKDFRPTPGKIEKLLIPGGFGVRVDTHIYEGYKVPQYYDSLLAKLIVWGET
REEAIKRGERALSEFVIEGNLKTTIPFHLKLLKDENFIKGALDTKILENKILPKLKR"
misc_feature complement(50011..51354)
/locus_tag="Dester_0055"
/note="acetyl-CoA carboxylase biotin carboxylase subunit;
Validated; Region: PRK08591"
/db_xref="CDD:236307"
misc_feature complement(51028..51351)
/locus_tag="Dester_0055"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature complement(50389..51012)
/locus_tag="Dester_0055"
/note="Carbamoyl-phosphate synthase L chain, ATP binding
domain; Region: CPSase_L_D2; pfam02786"
/db_xref="CDD:190425"
misc_feature complement(50035..50358)
/locus_tag="Dester_0055"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:214878"
gene complement(51365..51799)
/locus_tag="Dester_0056"
/db_xref="GeneID:10269264"
CDS complement(51365..51799)
/locus_tag="Dester_0056"
/note="COGs: COG0511 Biotin carboxyl carrier protein;
InterPro IPR000089: IPR001249;
KEGG: pmx:PERMA_1083 acetyl-CoA carboxylase, biotin
carboxyl carrier protein;
PFAM: Biotin/lipoyl attachment;
SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier
protein;
TIGRFAM: Acetyl-CoA biotin carboxyl carrier;
PFAM: Biotin-requiring enzyme;
TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier
protein"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxyl carrier
protein"
/protein_id="YP_004280774.1"
/db_xref="GI:325294260"
/db_xref="GeneID:10269264"
/translation="MLDKVRELLKALENTSIEEVEIEVEGIKLRAKFARGVVKEIPLQ
EVVPKEIKKEEKEEITKNTEDYYVVESPMVGTFYRAPAPGAEPFVKEGDFVEKGQTLC
IIEALKVMNEIEAEVSGVVKKILVENGQPVEYGQPLFYIEKA"
misc_feature complement(51377..51598)
/locus_tag="Dester_0056"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature complement(order(51452..51454,51473..51481,51506..51508))
/locus_tag="Dester_0056"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature complement(51476..51478)
/locus_tag="Dester_0056"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(51809..52381)
/locus_tag="Dester_0057"
/db_xref="GeneID:10269265"
CDS complement(51809..52381)
/locus_tag="Dester_0057"
/note="COGs: COG0231 translation elongation factor P
(EF-P)/translation initiation factor 5A (eIF-5A);
HAMAP: translation elongation factor P;
InterPro IPR013185: IPR001059: IPR015365: IPR011768;
KEGG: pmx:PERMA_1082 elongation factor P;
PFAM: Elongation factor P, C-terminal; translation
elongation factor, KOW-like; translation elongation factor
P/YeiP, central;
SPTR: Elongation factor P;
TIGRFAM: translation elongation factor P;
PFAM: Elongation factor P, C-terminal; Elongation factor P
(EF-P) KOW-like domain; Elongation factor P (EF-P) OB
domain;
TIGRFAM: translation elongation factor P"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_004280775.1"
/db_xref="GI:325294261"
/db_xref="GeneID:10269265"
/translation="MASIDVNQIAKGMKLEIEGYPYEIVDYQHVKPGKGQAFARIKLK
NLKTGNVVEKTYKVGEKLELADFEEREMEYIYNDGESYYFMDTKTYEQVGVSETALGE
KAKFLKENTTVMVQFYKGEAISVKLPKSIVLQVTDTEPGFKGDTVSNVTKPATLETGA
VIQVPMFINPGDYVKVNPETGEYIERVNIK"
misc_feature complement(51818..52372)
/locus_tag="Dester_0057"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:234788"
misc_feature complement(52196..52366)
/locus_tag="Dester_0057"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature complement(51998..52180)
/locus_tag="Dester_0057"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:239916"
misc_feature complement(order(52016..52021,52034..52036,52109..52111))
/locus_tag="Dester_0057"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239916"
misc_feature complement(51824..51991)
/locus_tag="Dester_0057"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:240220"
misc_feature complement(order(51833..51838,51851..51853,51902..51904))
/locus_tag="Dester_0057"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240220"
gene 52461..53387
/locus_tag="Dester_0058"
/db_xref="GeneID:10269266"
CDS 52461..53387
/locus_tag="Dester_0058"
/note="KEGG: pmx:PERMA_0415 fibronectin type III domain
protein;
SPTR: Fibronectin type III domain protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280776.1"
/db_xref="GI:325294262"
/db_xref="GeneID:10269266"
/translation="MRKLLLLCFVPFVFSFTMCGNRGDPLPPLSYSPESPEISKIEEV
YKNFLVRWKPIEKFSDGRKLANSKDVYYIVSINFGKEKVKVKDAFFLDNKTISVGERR
CYTITAVYRGKYFSQPSESVCVKAEKPIEKIPKILSYKAGDGFVEFRFKPVNGYKIEV
FKNADTFSPYQILSPKVNTFIDKKVVNGKEYFYKFRFSKGNVKGRFSKVYKLKPEDRM
PPKPPKNAFLIRKGKGCVILWDPSPSKDVVKYIIFRGNEVVGSTNGGIYLFLPNCSNN
YYVKAIDKAGNSSKPKEVKEVHNEEGSSNNGK"
sig_peptide 52461..52529
/locus_tag="Dester_0058"
/note="Signal predicted by SignalP 3.0 HMM"
gene 53356..53823
/locus_tag="Dester_0059"
/db_xref="GeneID:10269267"
CDS 53356..53823
/locus_tag="Dester_0059"
/EC_number="4.1.1.21"
/note="COGs: COG0041 phosphoribosylcarboxyaminoimidazole
(NCAIR) mutase;
InterPro IPR000031;
KEGG: pmx:PERMA_0641 phosphoribosylaminoimidazole
carboxylase, catalytic subunit;
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
(AIR) carboxylase;
PRIAM: phosphoribosylaminoimidazole carboxylase;
SPTR: phosphoribosylaminoimidazole carboxylase, catalytic
subunit;
TIGRFAM:
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR)
carboxylase;
PFAM: AIR carboxylase;
TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE
protein"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="YP_004280777.1"
/db_xref="GI:325294263"
/db_xref="GeneID:10269267"
/translation="MKKVAVIMGSKSDLPVMESCTKTLDEFGVPYDVKVLSAHRTIDE
VITFCEKAEEEYDVIIAAAGYAAHLGGVIAAKTTLPVIGVPLDASPLKGIDSLLSIVQ
MPGGIPVATVTIGKAGAKNAAVLAVEIMAIKYPELKEKLKNYREEMRRKILEG"
misc_feature 53362..53811
/locus_tag="Dester_0059"
/note="AIR carboxylase; Region: AIRC; pfam00731"
/db_xref="CDD:144362"
gene 53825..54724
/locus_tag="Dester_0060"
/db_xref="GeneID:10269268"
CDS 53825..54724
/locus_tag="Dester_0060"
/note="COGs: COG1578 conserved hypothetical protein;
InterPro IPR002791;
KEGG: aae:aq_893 hypothetical protein;
PFAM: Domain of unknown function DUF89;
SPTR: uncharacterized protein;
PFAM: Protein of unknown function DUF89"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280778.1"
/db_xref="GI:325294264"
/db_xref="GeneID:10269268"
/translation="MKVYPECIPCFMKQILNVSRIADIPDSAIMEVLKESAKFIAKDL
KINKSPGHNATFLHRIFKEKTKIQDPYKSLKDKYTEIALRLEPYLEEEFYRKSDDQLS
MAIRLAALGNVIDFGIPREFDLLEEIKNLLHIPFAYFDVAILERFFVSGKPVLYVADN
AGEIVFDKFLLRELKNRGLKVIFAVRGGPILNDATVEDALKSGIAEVVDELITTGKDF
IGIDFDFVSEEFKNYWDRAFFVISKGQANFETLDGINSKDIFFILKAKCKPVAKELNC
NVNDLIFLYNKHLLEIAESAGTK"
misc_feature 53825..54682
/locus_tag="Dester_0060"
/note="Protein of unknown function DUF89; Region: DUF89;
cl15397"
/db_xref="CDD:246946"
gene 54708..55319
/locus_tag="Dester_0061"
/db_xref="GeneID:10269269"
CDS 54708..55319
/locus_tag="Dester_0061"
/note="COGs: COG0009 translation factor (SUA5);
InterPro IPR006070: IPR004388;
KEGG: cpy:Cphy_3747 SUA5/YciO/YrdC/YwlC family protein;
PFAM: Sua5/YciO/YrdC, N-terminal;
SPTR: Sua5/YciO/YrdC/YwlC family protein;
TIGRFAM: Sua5/YciO/YrdC/YwlC;
PFAM: yrdC domain;
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein"
/codon_start=1
/transl_table=11
/product="Sua5/YciO/YrdC/YwlC family protein"
/protein_id="YP_004280779.1"
/db_xref="GI:325294265"
/db_xref="GeneID:10269269"
/translation="MQVLSKEDIEKISQILRAGELICSPTDTLFGILGNALDKEVVKK
LYSVKKRDVNKPLIVLFSSIEQLVNFGVLVPLKYLNGLKKLYPAPVTVILPLSKESPF
RKVFQRDNLAVRIPKDDFLQKLIKKTFPLFAPSANPQGELPAKNCKECKNYFDGVINF
CIEGKVSEAPSTIVDLTGETPVLIRKGIVKFEKVLEVLSDKTT"
misc_feature 54732..55301
/locus_tag="Dester_0061"
/note="Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis]; Region: SUA5;
COG0009"
/db_xref="CDD:223088"
gene 55303..56238
/locus_tag="Dester_0062"
/db_xref="GeneID:10269270"
CDS 55303..56238
/locus_tag="Dester_0062"
/EC_number="2.1.2.9"
/note="COGs: COG0223 methionyl-tRNA formyltransferase;
HAMAP: methionyl-tRNA formyltransferase;
InterPro IPR002376: IPR005793: IPR005794;
KEGG: pmx:PERMA_0584 methionyl-tRNA formyltransferase;
PFAM: Formyl transferase, N-terminal; Formyl transferase,
C-terminal;
PRIAM: methionyl-tRNA formyltransferase;
SPTR: methionyl-tRNA formyltransferase;
TIGRFAM: methionyl-tRNA formyltransferase;
PFAM: Formyl transferase; Formyl transferase, C-terminal
domain;
TIGRFAM: methionyl-tRNA formyltransferase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_004280780.1"
/db_xref="GI:325294266"
/db_xref="GeneID:10269270"
/translation="MTKQLKVVFMGTPDFAVPSLKKLFEAGFEIPLVITQPDRPAGRG
KRIKPPPVKVLAEKFNIPVYQPEKVKGNEELLNKLKEISPDLIVVAAYGKILPNEILD
LPKFGCINVHASLLPEYRGASPIQSALLDGKEKTGVTIMLISPELDAGDIISQKEVLI
DRKDNAQTLHDKLANLGAELLVETIPYYVSGKLKPIPQENSKATYCKPITKEMGKIDW
TLPAEKIFNMIRAFTPWPSAYTTFRGKRIKLLEAEPIEGSGNPGEVIKADKELVISTG
EGALKVKKLRPEGKKEISGEEFIRGYRIKVGEKFF"
misc_feature 55315..56232
/locus_tag="Dester_0062"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:234567"
misc_feature 55315..55929
/locus_tag="Dester_0062"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(55333..55335,55345..55350,55567..55590,55603..55605,
55630..55641,55663..55665,55723..55725,55729..55734,
55741..55746)
/locus_tag="Dester_0062"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(55336..55341,55345..55347,55408..55410,55420..55422,
55426..55437,55570..55581,55630..55632,55636..55641,
55663..55671,55924..55926)
/locus_tag="Dester_0062"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(55567..55569,55576..55578,55582..55590,55603..55605,
55630..55632,55729..55734,55741..55746)
/locus_tag="Dester_0062"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(55630..55632,55636..55638,55744..55746)
/locus_tag="Dester_0062"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 55936..56187
/locus_tag="Dester_0062"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(56005..56007,56038..56040,56044..56046,56158..56160,
56164..56166,56170..56175,56179..56181)
/locus_tag="Dester_0062"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 56328..56756
/locus_tag="Dester_0063"
/db_xref="GeneID:10269271"
CDS 56328..56756
/locus_tag="Dester_0063"
/note="COGs: COG0735 Fe2+/Zn2+ uptake regulation protein;
InterPro IPR002481;
KEGG: hth:HTH_1439 transcriptional regulator, Fur family;
PFAM: Ferric-uptake regulator;
SPTR: transcriptional regulator, Fur family;
PFAM: Ferric uptake regulator family"
/codon_start=1
/transl_table=11
/product="ferric uptake regulator, Fur family"
/protein_id="YP_004280781.1"
/db_xref="GI:325294267"
/db_xref="GeneID:10269271"
/translation="MEKLERFKRITRERGLRVTPQRVAVYKEILSRKDHPSAEEIYEA
LKDKVEGISLTTVYRTLSNLEEVGLVVRIPTLKDKVHYDARVEPHSHFICLKCGRIYD
VEVSPEVSFENLKKEGFEVSNSAFICYGICKNCKVKNEEV"
misc_feature 56385..56723
/locus_tag="Dester_0063"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(56430..56432,56574..56576,56592..56594,56598..56600,
56631..56633)
/locus_tag="Dester_0063"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 56484..56528
/locus_tag="Dester_0063"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(56589..56591,56595..56597,56652..56654,56697..56699)
/locus_tag="Dester_0063"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(56604..56612,56658..56663,56682..56690,56694..56720)
/locus_tag="Dester_0063"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(56607..56609,56616..56618,56721..56723)
/locus_tag="Dester_0063"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 56743..57936
/locus_tag="Dester_0064"
/db_xref="GeneID:10269272"
CDS 56743..57936
/locus_tag="Dester_0064"
/note="COGs: COG1078 HD superfamily phosphohydrolase;
InterPro IPR006674: IPR003607;
KEGG: fjo:Fjoh_2905 metal dependent phosphohydrolase;
PFAM: Metal-dependent phosphohydrolase, HD subdomain;
SMART: Metal-dependent phosphohydrolase, HD domain;
SPTR: phosphohydrolase;
PFAM: HD domain"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_004280782.1"
/db_xref="GI:325294268"
/db_xref="GeneID:10269272"
/translation="MKKYKLLMDPVYNEFVMVERGGILAKILDSLYIQRLRHVRQLGP
CYYVYPGAEHTRFQHSIGVMWLAKKALDYLSLKDYQIDEFLKTSILVAALTHDTGHSP
FSHALEGVILPYKHEDLTLYALDMLLEELNLEKELINTVKAIIKKEHSLPFVYQLISS
QLDCDRLDYLTRDAFYTGVSFGKIDVNRILVSVLIEDGELIWSFKGFNALEAYVMSRY
QMYWAVYFHKVNLSVQVLLKKIVERIKELIFNGVSLDMDLTLSKVLKEENIEKFFRLT
DGNVVSSIYLLMDSNDNILSDLCKRLVKRNFFETVEVTPSKVLEYRERVERAGFDPKY
YFEVIEPSKVAYSYYSPSGVDIIRVKVEDRIDELSNVAPTDALKALSRKVSKTYVVLP
KEVLS"
misc_feature 56743..57924
/locus_tag="Dester_0064"
/note="HD superfamily phosphohydrolases [General function
prediction only]; Region: COG1078"
/db_xref="CDD:224004"
misc_feature 56902..57312
/locus_tag="Dester_0064"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(56917..56919,57028..57033,57235..57237)
/locus_tag="Dester_0064"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 57031..57033
/locus_tag="Dester_0064"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene complement(57933..58349)
/locus_tag="Dester_0065"
/db_xref="GeneID:10269273"
CDS complement(57933..58349)
/locus_tag="Dester_0065"
/note="InterPro IPR018449;
KEGG: sat:SYN_00800 ferridoxin;
PFAM: NIL domain;
SPTR: Ferridoxin;
PFAM: 4Fe-4S binding domain; NIL domain"
/codon_start=1
/transl_table=11
/product="NIL domain-containing protein"
/protein_id="YP_004280783.1"
/db_xref="GI:325294269"
/db_xref="GeneID:10269273"
/translation="MKETSTRLVLHFPKETWDKPVIYKLVKDYDLIVNILRAEILPKM
EGSAVIELRGERKRIGEAVKFLKSLKIKIKPLELDIFREDEKCVHCGACIAPCPTNAF
YLDQETFKVKFDKDKCVGCGHCIPACPLRIIYSTEF"
misc_feature complement(58122..58340)
/locus_tag="Dester_0065"
/note="This domain is found at the C-terminus of ABC
transporter proteins involved in D-methionine transport as
well as a number of ferredoxin-like proteins; Region: NIL;
smart00930"
/db_xref="CDD:197998"
misc_feature complement(58041..>58097)
/locus_tag="Dester_0065"
/note="4Fe-4S binding domain; Region: Fer4; cl02805"
/db_xref="CDD:243197"
misc_feature complement(57963..58091)
/locus_tag="Dester_0065"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:221801"
misc_feature complement(57948..58019)
/locus_tag="Dester_0065"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:215671"
gene complement(58359..58808)
/locus_tag="Dester_0066"
/db_xref="GeneID:10269274"
CDS complement(58359..58808)
/locus_tag="Dester_0066"
/note="KEGG: aag:AaeL_AAEL003638 sodium/shloride dependent
amino acid transporter;
SPTR: transporter"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280784.1"
/db_xref="GI:325294270"
/db_xref="GeneID:10269274"
/translation="MKEFRVKQESGVALFPLIVDFLLLIGALFMDGIWRWIFISLSLI
FAGLVIYQSRPIFKNFQLVITPKEIKVLDFRGNVVRKIDWKKVEGAAAGFRKTWLIYT
YSFYFRVKGDEDLLFSLISREAGLTGKFQNFIKVFVRKKIPVQVIKG"
gene complement(58832..59734)
/locus_tag="Dester_0067"
/db_xref="GeneID:10269275"
CDS complement(58832..59734)
/locus_tag="Dester_0067"
/EC_number="2.5.1.72"
/note="COGs: COG0379 Quinolinate synthase;
HAMAP: Quinolinate synthase A;
InterPro IPR003473;
KEGG: ddf:DEFDS_0483 quinolinate synthase subunit A;
PFAM: Quinolinate synthetase A;
PRIAM: Quinolinate synthase;
SPTR: Quinolinate synthase, subunit A;
TIGRFAM: Quinolinate synthetase A;
PFAM: Quinolinate synthetase A protein;
TIGRFAM: quinolinate synthetase complex, A subunit"
/codon_start=1
/transl_table=11
/product="quinolinate synthase A"
/protein_id="YP_004280785.1"
/db_xref="GI:325294271"
/db_xref="GeneID:10269275"
/translation="MDKIERIKELKREKNAVILAHYYVDGAIQDIADFVGDSLELARK
AKSVESDIIVFCGVYFMGETAKILNPDRKVLIPYYKAGCLMADMAIAEEIEEFRRENP
DYAVVTYVNSSADVKAVSDVCCTSANAVKIVENLNAEKILFVPDKNLGSYVAEKVKNK
EIKVWSGYCPVHQKLTVEEVEKKKKEYPNAVFVAHPECKKEVRDLADFVGSTSQIINF
VKETKANKVIVGTEEGIIHQLKKQRPDIEFILAYSEFSCDQMKMITVDRLLNALEREQ
FEVEVPKDTAKKAKVAIEKMIEMS"
misc_feature complement(58838..59692)
/locus_tag="Dester_0067"
/note="Quinolinate synthetase A protein; Region: NadA;
pfam02445"
/db_xref="CDD:217038"
gene complement(59739..61292)
/locus_tag="Dester_0068"
/db_xref="GeneID:10269276"
CDS complement(59739..61292)
/locus_tag="Dester_0068"
/EC_number="6.3.5.2"
/note="COGs: COG0519 GMP synthase PP-ATPase
domain/subunit;
HAMAP: GMP synthase [glutamine-hydrolyzing];
InterPro IPR000991: IPR001674: IPR004739;
KEGG: pmx:PERMA_0029 GMP synthase;
PFAM: GMP synthase, C-terminal; Glutamine amidotransferase
class-I, C-terminal;
PRIAM: GMP synthase (glutamine-hydrolyzing);
SPTR: GMP synthase;
TIGRFAM: GMP synthase, C-terminal; GMP synthase,
N-terminal;
PFAM: Glutamine amidotransferase class-I; GMP synthase C
terminal domain; Asparagine synthase;
TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal
domain or B subunit; GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_004280786.1"
/db_xref="GI:325294272"
/db_xref="GeneID:10269276"
/translation="MVKDIHESKILILDFGSQYTQLIARRLREKHIYCEIHPFNISIE
KIKEFKPKGIILSGGPASVYAPDSPKISKEIFELGVPVLGICYGMQLITYLFDGEVVR
AERHEYGRAELEILDSSDLFAELPEKFVVWMSHGDRVLRIPPTFEPIAKTENAPYAAI
RNKEKRIFGVQFHPEVKHSQYGDKVLENFAVKICGCEPSWTMENFIEYEIKKIREIVG
DKNVICALSGGVDSSVVAALLHKAIGDQLYPIFVDTGLLRKGERESVEKTFREKFQMK
NFRTVDASSLFLERLKGVTDPEKKRKIIGHTFIEVFEKAAKEIPNAHFLAQGTLYPDV
IESVSVKGPSATIKSHHNVGGLPERLNFKLIEPLRELFKDEVRELGKELGLPEEIIKR
QPFPGPGLAIRIVGEVKPEYIKILREADAIVLEEIKKAGLYDKIWQSFAVFLPVQTVG
VMGDVRTYDYVIAIRAVESVDGMTADWVKLPYELLERISNRIINEVEGVNRVVYDITS
KPPGTIEWE"
misc_feature complement(59742..61280)
/locus_tag="Dester_0068"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:234614"
misc_feature complement(60723..61265)
/locus_tag="Dester_0068"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature complement(order(60774..60776,60891..60893,61032..61037,
61113..61121,61239..61244))
/locus_tag="Dester_0068"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature complement(order(61032..61034,61116..61118))
/locus_tag="Dester_0068"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature complement(order(60768..60770,60774..60776,61035..61037))
/locus_tag="Dester_0068"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature complement(order(60780..60782,60888..60890,61023..61025))
/locus_tag="Dester_0068"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature complement(59745..60629)
/locus_tag="Dester_0068"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:238955"
misc_feature complement(order(60075..60119,60135..60209,60222..60251,
60276..60323,60339..60452,60486..60518,60522..60554,
60558..60629))
/locus_tag="Dester_0068"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature complement(order(60174..60176,60537..60539,60543..60545,
60597..60608,60612..60620))
/locus_tag="Dester_0068"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:238955"
misc_feature complement(order(59745..59813,59817..59843,59862..59909,
59919..59951,59958..59987,60012..60050))
/locus_tag="Dester_0068"
/note="Dimerization subdomain; other site"
/db_xref="CDD:238955"
gene complement(61304..61396)
/locus_tag="Dester_0069"
/db_xref="GeneID:10269277"
CDS complement(61304..61396)
/locus_tag="Dester_0069"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280787.1"
/db_xref="GI:325294273"
/db_xref="GeneID:10269277"
/translation="MDAKLIELIIIFSLGLVSSLIFLYFVVKKL"
gene complement(61440..62132)
/locus_tag="Dester_0070"
/db_xref="GeneID:10269278"
CDS complement(61440..62132)
/locus_tag="Dester_0070"
/note="KEGG: cdf:CD2890 hypothetical protein;
SPTR: Hypothetical phage protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280788.1"
/db_xref="GI:325294274"
/db_xref="GeneID:10269278"
/translation="MSCSCRKGKSAKKLKTKEIDELLKFLKKNPELFFFIANLVNSFR
PIDPERIKAERVFLTVREVHELGLLSFSQSEELFRLLKNFFVEKTDKQRGNFLELLVS
ILGPFTFKAKNKRINQCKMFKKYKKLSDKEIDVAFSSKEYLEVHECKSNMGRQWRDPL
SKKSKKGAKLFFMNELPEVCKSKRKVIVCCSGLDGELTTCYVKKVFKFYKFKNIKVIG
RKELLEKIKASF"
gene complement(62122..62472)
/locus_tag="Dester_0071"
/db_xref="GeneID:10269279"
CDS complement(62122..62472)
/locus_tag="Dester_0071"
/note="KEGG: meh:M301_2747 AsmA family protein;
SPTR: AsmA family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280789.1"
/db_xref="GI:325294275"
/db_xref="GeneID:10269279"
/translation="MKEKSSYWVLQEVFIDPGIAGKTVECNLNVKVATDVKKEKTTCK
VTVEIFGSLTSGNEQIANIRFVNVTNLSLDKKTANKVIAKKVMKRKIEELLAFLPLYL
IKAGITVKEIEYEL"
gene complement(62469..62843)
/locus_tag="Dester_0072"
/db_xref="GeneID:10269280"
CDS complement(62469..62843)
/locus_tag="Dester_0072"
/note="KEGG: bhy:BHWA1_01883 TPR domain-containing
protein;
SPTR: riboflavin biosynthesis protein RibD"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280790.1"
/db_xref="GI:325294276"
/db_xref="GeneID:10269280"
/translation="MKIAKTDLPSIYNLKPSEAFDLFKGKLFKVINQLPPNKVTNRAI
KEIFKKEGKERLEFLEKKFKELDCSSLEARKVIYNSFHRVFQRLRWAEDAGREKEIEL
RVWATSSVDFLCEVVRVLGERE"
gene 62882..63484
/locus_tag="Dester_0073"
/db_xref="GeneID:10269281"
CDS 62882..63484
/locus_tag="Dester_0073"
/note="COGs: COG1496 conserved hypothetical protein;
InterPro IPR003730;
KEGG: hth:HTH_1582 hypothetical protein;
PFAM: Multi-copper polyphenol oxidoreductase, laccase;
SPTR: uncharacterized protein;
PFAM: Multi-copper polyphenol oxidoreductase laccase;
TIGRFAM: uncharacterized protein, YfiH family"
/codon_start=1
/transl_table=11
/product="multi-copper polyphenol oxidoreductase, laccase"
/protein_id="YP_004280791.1"
/db_xref="GI:325294277"
/db_xref="GeneID:10269281"
/translation="MKYEIFISEKPKDGREINEIKGIPVLKPIQVHGTNIVFVGRSVP
FNLQADAIVTDSKNYWIGVLTADCLPVFLVGEGVVGVVHAGWRGTLKGIVFNTVKYIS
EFSAVKKAILGVSICSQCYEVGEDVYSLYPKEYSKCFKKLKNSKFLFDLKEANKIQLK
AAGVHEIEDIKKCTVCNNDIFHSYRAEKTDKRILSAIRII"
misc_feature 62924..63478
/locus_tag="Dester_0073"
/note="Multi-copper polyphenol oxidoreductase laccase;
Region: Cu-oxidase_4; pfam02578"
/db_xref="CDD:217118"
gene 63484..64497
/locus_tag="Dester_0074"
/db_xref="GeneID:10269282"
CDS 63484..64497
/locus_tag="Dester_0074"
/note="COGs: COG0758 Rossmann fold nucleotide-binding
protein involved in DNA uptake;
InterPro IPR003488;
KEGG: tte:TTE1450 DNA uptake Rossmann fold
nucleotide-binding protein;
PFAM: DNA recombination-mediator protein A;
SPTR: Predicted Rossmann-fold nucleotide-binding protein
involved in DNA uptake;
TIGRFAM: DNA recombination-mediator protein A;
PFAM: DNA recombination-mediator protein A;
TIGRFAM: DNA protecting protein DprA"
/codon_start=1
/transl_table=11
/product="DNA protecting protein DprA"
/protein_id="YP_004280792.1"
/db_xref="GI:325294278"
/db_xref="GeneID:10269282"
/translation="MEETLISIAFLFKRGIGARKYIFLLKNYESLSEAVRKEKIDLSK
ELKLAEKELRKAKKLGIKIVPLCSESYPSLLKEIHQPPIVLYVRGTLPDIPFIAVVGS
RKTSNYGRRIAYSLGKFLSENDISVVSGLAYGIDSYAHKGAIDGKGKTIAVLGSGVDS
IYPRGNFSLAERIVDTGGAIISEFPLGTKPSKENFPRRNRIISGISHATIVVEAGEKS
GALITADFALEQGRTVFAVPGNIDSSFSKGTNRLIKEGASPLLDFKDLFDELSFLKKS
SIKQYIPENFKGIYELLSRSPLSIDQIADKLDMDIPTLTTLLLEMEILGLVRKEGGIY
TTL"
misc_feature 63661..64293
/locus_tag="Dester_0074"
/note="DNA protecting protein DprA; Region: dprA;
TIGR00732"
/db_xref="CDD:129815"
misc_feature 63661..64269
/locus_tag="Dester_0074"
/note="DNA recombination-mediator protein A; Region:
DNA_processg_A; pfam02481"
/db_xref="CDD:217060"
gene complement(64516..65169)
/locus_tag="Dester_0075"
/db_xref="GeneID:10269283"
CDS complement(64516..65169)
/locus_tag="Dester_0075"
/EC_number="3.4.21.89"
/note="COGs: COG0681 Signal peptidase I;
InterPro IPR019759: IPR019533: IPR000223;
KEGG: pmx:PERMA_0639 signal peptidase I;
PFAM: peptidase S24/S26A/S26B, conserved region; peptidase
S26, conserved region;
PRIAM: Signal peptidase I;
SPTR: Signal peptidase I;
TIGRFAM: peptidase S26A, signal peptidase I;
manually curated;
PFAM: peptidase S26; peptidase S24-like;
TIGRFAM: signal peptidase I, bacterial type"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_004280793.1"
/db_xref="GI:325294279"
/db_xref="GeneID:10269283"
/translation="MEIAMQNKIVENLKSFAIALVLALIIRTFLVQSFHIPSGSMIPT
LLVGDFILVDKITYHLREPDRGDVVVFHFPLNEDVYYIKRIIGVPGDKVQVIDGKVYI
NGKPCKYEPGGTYSYTEKGSSYKGRLFYEFLPRKEGGEKKHLILKTGGRGDNTQVFVI
PKDKYLMMGDNRNNSYDSRYWGFVDRSKIVGIARIIFFSWDGEKHLPRFNRIFKLIN"
misc_feature complement(64567..65136)
/locus_tag="Dester_0075"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:233790"
misc_feature complement(<64906..65076)
/locus_tag="Dester_0075"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature complement(order(64921..64923,65050..65052))
/locus_tag="Dester_0075"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature complement(64591..>64677)
/locus_tag="Dester_0075"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene 65219..65929
/locus_tag="Dester_0076"
/db_xref="GeneID:10269284"
CDS 65219..65929
/locus_tag="Dester_0076"
/note="COGs: COG3137 salt-induced outer membrane protein;
InterPro IPR007433;
KEGG: pmx:PERMA_1693 hypothetical protein;
PFAM: Protein of unknown function DUF481;
SPTR: salt-induced outer membrane protein-like protein;
PFAM: Protein of unknown function, DUF481"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280794.1"
/db_xref="GI:325294280"
/db_xref="GeneID:10269284"
/translation="MDYGKKLFFLIVMACFPLTALGQNNQISISYSNTAGNTNTQSLT
VGYRFEKGLEGKRFYSNGSYFYKKDDGKETANKLVVDNRFELDITNRLLFFVKNFIHR
DTFSGYNLRLGVGPGVGYQLLKKDNENLKLFFGADFTYNNYVDQGTENYVAGDVGLEY
NRQLLENLFFTQKVSYLMSLKNSKDYFVHSETCFKVPITEKMALGVSYKINYHNLLPD
GAKYHTDKMFSTSLIYSF"
sig_peptide 65219..65284
/locus_tag="Dester_0076"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 65297..65926
/locus_tag="Dester_0076"
/note="Protein of unknown function, DUF481; Region:
DUF481; pfam04338"
/db_xref="CDD:218032"
gene 66005..66622
/locus_tag="Dester_0077"
/db_xref="GeneID:10269285"
CDS 66005..66622
/locus_tag="Dester_0077"
/note="KEGG: pfd:PFDG_00198 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280795.1"
/db_xref="GI:325294281"
/db_xref="GeneID:10269285"
/translation="MGIMFFLILFLLFILIVVPLMKSNRQTVSRPKTVEIKGLDGSIL
MFSNDGVSYFKDGNFKFFKSSEIKRFSFEKLDENTYEIKVDNGSEIITVPVKKEEVQK
LFQRTYSPNGELTYTPGFPWLGTILGTAAGFFIADLIADSMHDAVAHQQENQEKDNSE
EHEKDVSKETETDSDDKSKDYVDSEGLDFASYNDEFETGDFFDDF"
sig_peptide 66005..66070
/locus_tag="Dester_0077"
/note="Signal predicted by SignalP 3.0 HMM"
gene 66609..69032
/locus_tag="Dester_0078"
/db_xref="GeneID:10269286"
CDS 66609..69032
/locus_tag="Dester_0078"
/note="COGs: COG1032 Fe-S oxidoreductase;
InterPro IPR007197: IPR018768: IPR006638;
KEGG: gur:Gura_0300 radical SAM domain-containing protein;
PFAM: Protein of unknown function DUF2344; Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Radical SAM domain protein;
PFAM: Uncharacterized protein conserved in bacteria
(DUF2344); Radical SAM superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280796.1"
/db_xref="GI:325294282"
/db_xref="GeneID:10269286"
/translation="MTIFKDELLLQELYSVKKPASYLSLELNKRAPKFEEREVRFVLT
YPDLYEVGTSHIGGKILYYILNDLTDFALCHRAYLPRPDMQEFMKRKGIPLYTLEEFR
PVKDYDLWGLSFSSELTYTNALRVINLAGLPLKREEREGFPIIFAGGPCMYNPIPISL
FVDLVSIGDGEETLVEVAKLTREIKKAGGTKEDFLYEARKIEGIWVPKFGKYPVKKAV
FTKIPEGFFPTSPPIPVVETSQDRITIEVSRGCLRGCRFCQAGFIYRPYRERNEKLIE
TLLESTFKNTGYEEASLSSLSVSDHSRFNSLIPEVMEVCYKEMISLSLPSMRVKSFNP
ELASQLMQVKKTGFTLAPEAGSERLRRAINKDLTNEDLFRVVEGLFSRGWGRLKLYFM
IGLPFEDEEDIDALIDMLWQVYKIGKKYKGKKHLAAGISIFVSKPFTPFQWESFASEE
EVKEKIAYIKKKAPRSFKLRFHDYRQSLIEAILTRGNEEVSKLIETAYLEGCQLDGWD
EFFNWEGWLRAFEKTGFDVKEATKKKDLEKELPWDFIKGVVSKKFLIREFEKAKKAQK
TPDCRIVGCHGCGACTLQQIKELKNHPIPEKIEFNVPPRPKREFPLKRKVALVFEKKG
FTKFLSLLDLTRAFTRTFRKFGVPLRYSQGFNPHPKINILLGLPVGVEGNGEIVEVEL
TEESYDFEKFIENSKEFLPEGLRFKKFIELHSKETLLSKIETVTYIIIPFKDYNISLL
REEKLFNRKGKEVVLKDHIAWFKEEKNLIKIAIKVINGNILNIQDILNWIGLSLGTAK
VCREELIKT"
misc_feature 66624..68348
/locus_tag="Dester_0078"
/note="radical SAM family uncharacterized protein; Region:
rSAM_fuse_unch; TIGR03960"
/db_xref="CDD:188475"
misc_feature <66900..67145
/locus_tag="Dester_0078"
/note="B12 binding domain (B12-BD). Most of the members
bind different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide. This domain is found in
several enzymes, such as glutamate mutase; Region:
B12-binding_like; cl00293"
/db_xref="CDD:241759"
misc_feature order(66939..66947,66951..66956,66960..66962,67056..67058,
67125..67127,67134..67136)
/locus_tag="Dester_0078"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:239016"
misc_feature 67341..67847
/locus_tag="Dester_0078"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(67359..67361,67365..67367,67371..67373,67377..67385,
67488..67490,67494..67499,67575..67583,67659..67661,
67782..67784)
/locus_tag="Dester_0078"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 68451..69023
/locus_tag="Dester_0078"
/note="radical SAM-linked protein; Region: sam_1_link_chp;
TIGR03936"
/db_xref="CDD:234405"
misc_feature 68466..>68882
/locus_tag="Dester_0078"
/note="Uncharacterized protein conserved in bacteria
(DUF2344); Region: DUF2344; cl02090"
/db_xref="CDD:242874"
gene 68989..70515
/locus_tag="Dester_0079"
/db_xref="GeneID:10269287"
CDS 68989..70515
/locus_tag="Dester_0079"
/note="COGs: COG1530 ribonuclease G and E;
InterPro IPR019307: IPR004659;
KEGG: ddf:DEFDS_0023 ribonuclease E and G;
PFAM: RNA-binding protein AU-1/ribonuclease E/G;
SPTR: ribonuclease E and G;
TIGRFAM: ribonuclease E/G;
PFAM: ribonuclease E/G family; S1 RNA binding domain;
TIGRFAM: ribonuclease, Rne/Rng family"
/codon_start=1
/transl_table=11
/product="ribonuclease, Rne/Rng family"
/protein_id="YP_004280797.1"
/db_xref="GI:325294283"
/db_xref="GeneID:10269287"
/translation="MEQQKCVEKNSSKPKKQILINAHTKEVRIAVLEEGELVEFYVER
KGNRGIVGNIYKGRVVKIVPAVQAAFVDIGISKKAFLYVKDAVTVEFEEEEDLFEETT
QPQEIELPPIEEVLSEGQEVLVQVSKEPIGTKGPRITTNITVPGHYLVLLPTVNKIGI
SRRITDEAERERLKKIAEDIKPEDYGIIVRTAAEGATKEDLKKDLEYILRVWKGLLEK
AENRPPPSLLYQDLEIVPKTLRDLLTEEVSEVIIDSKAEFERALSFAKAFIPKLAGRI
KYYSKDIPLFQRFEVEKAIEKTLSRKVYLPNGGYIVIDETEALVSIDVNSGKFKKTKT
LEETALRINLVAAKEIARQLRLRDIGGIIVIDFIDMKEEENKQLLLKTLEEELSKDRA
KTKIVSMSDLGLVEMTRKRVKKSLGKSLTMTCPYCEGKGRVKSIETVAFEIEREILSL
LKTNNSKVIKVYANPLVAEKLKGDEKDIIDKIEEVYEKKIKVIPVEYYHIEKFTVVRG
"
misc_feature 69070..70323
/locus_tag="Dester_0079"
/note="ribonuclease, Rne/Rng family; Region: RNaseEG;
TIGR00757"
/db_xref="CDD:233116"
misc_feature 69124..69426
/locus_tag="Dester_0079"
/note="S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of RNA.
In addition to its role in mRNA degradation, RNase E has
also been implicated in the processing of rRNA, and...;
Region: S1_RNase_E; cd04453"
/db_xref="CDD:239900"
misc_feature order(69154..69156,69337..69339,69349..69351)
/locus_tag="Dester_0079"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:239900"
misc_feature order(69226..69228,69370..69372,69379..69381,69388..69393,
69421..69423)
/locus_tag="Dester_0079"
/note="oligonucleotide binding site [chemical binding];
other site"
/db_xref="CDD:239900"
gene 70532..71482
/locus_tag="Dester_0080"
/db_xref="GeneID:10269288"
CDS 70532..71482
/locus_tag="Dester_0080"
/note="COGs: COG4105 DNA uptake lipoprotein;
InterPro IPR017689;
KEGG: hth:HTH_1429 DNA uptake lipoprotein;
SPTR: DNA uptake lipoprotein;
TIGRFAM: Outer membrane assembly lipoprotein YfiO;
TIGRFAM: outer membrane assembly lipoprotein YfiO"
/codon_start=1
/transl_table=11
/product="outer membrane assembly lipoprotein YfiO"
/protein_id="YP_004280798.1"
/db_xref="GI:325294284"
/db_xref="GeneID:10269288"
/translation="MRKGIIFFVCLLFLFSCEKIPRTAEGLYQEGMKAAKEGDWGKST
EMLEKALEGELPPSKQELAKITLANSYFNDQDFENAALNYEEFLDLYPASPRAKDALF
RLGISYLNLVKGPQWDQTFTKKAIRAFEKFVKEFPNDPRVEKAKIYKNIARKILAENE
VYIGGTYDMLHKFTASINRYKIVKEKYRDVESLDRIDYLIGRAYFFTDIQAKEEIDRL
KRQLDKEKEKLNSSDPEAKKVAENRIRLVEKDIEKWQKIAKKNKEIGKRILTEVAAKY
PNSTYGIKAKRILEGEKILNVEPVINPLKRSIWWKIKETL"
misc_feature 70532..71143
/locus_tag="Dester_0080"
/note="outer membrane assembly lipoprotein YfiO; Region:
OM_YfiO; TIGR03302"
/db_xref="CDD:234164"
misc_feature 70604..70945
/locus_tag="Dester_0080"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(70604..70609,70613..70618,70625..70630,70724..70729,
70733..70738,70745..70750,70835..70840,70847..70852,
70859..70864)
/locus_tag="Dester_0080"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature order(70622..70624,70658..70660,70670..70672,70679..70681,
70733..70735,70769..70771,70781..70783,70790..70792,
70844..70846,70904..70906,70916..70918,70925..70927)
/locus_tag="Dester_0080"
/note="TPR motif; other site"
/db_xref="CDD:238112"
gene 71493..71861
/locus_tag="Dester_0081"
/db_xref="GeneID:10269289"
CDS 71493..71861
/locus_tag="Dester_0081"
/note="COGs: COG0799 Iojap protein;
InterPro IPR004394;
KEGG: lsl:LSL_0504 iojap-related protein;
PFAM: Iojap-related protein;
SPTR: Iojap-related protein;
TIGRFAM: Iojap-related protein;
PFAM: Domain of unknown function DUF143;
TIGRFAM: iojap-like ribosome-associated protein"
/codon_start=1
/transl_table=11
/product="iojap family protein"
/protein_id="YP_004280799.1"
/db_xref="GI:325294285"
/db_xref="GeneID:10269289"
/translation="MDTLEKLKIALKAALDKKAENPVIIDLKDLTTLADYFLIITVNS
DVHGRTIADEIRKKLKEEGIVPLNIEGYDAANWILIDYGDLIVHIFKDEFRELYNLES
LWMDAPRVEIADLLPEETGV"
misc_feature 71550..71804
/locus_tag="Dester_0081"
/note="Oligomerisation domain; Region: Oligomerisation;
pfam02410"
/db_xref="CDD:217021"
gene 71858..72271
/locus_tag="Dester_0082"
/db_xref="GeneID:10269290"
CDS 71858..72271
/locus_tag="Dester_0082"
/note="COGs: COG1576 conserved hypothetical protein;
HAMAP: SPOUT methyltransferase, predicted;
InterPro IPR003742;
KEGG: pca:Pcar_2576 hypothetical protein;
PFAM: SPOUT methyltransferase, predicted;
SPTR: ribosomal RNA large subunit methyltransferase H;
PFAM: Predicted SPOUT methyltransferase;
TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH"
/codon_start=1
/transl_table=11
/product="ribosomal RNA large subunit methyltransferase H"
/protein_id="YP_004280800.1"
/db_xref="GI:325294286"
/db_xref="GeneID:10269290"
/translation="MKIRIVAVGKISTILKEAQEHYLQKLRILEIVEVKKQRTKEDEG
KKLLEKAKGYIVALDERGREMTSKEFASFLQKHPFITFIIGGADGLSEEVREKSNFLL
SLSKFTLQHDIARIVLLEQIYRADQIIKGTPYHRD"
misc_feature 71858..72268
/locus_tag="Dester_0082"
/note="rRNA large subunit methyltransferase; Provisional;
Region: PRK00103"
/db_xref="CDD:234634"
gene complement(72273..73241)
/locus_tag="Dester_0083"
/db_xref="GeneID:10269291"
CDS complement(72273..73241)
/locus_tag="Dester_0083"
/note="COGs: COG0535 Fe-S oxidoreductase;
InterPro IPR007197: IPR006638;
KEGG: ava:Ava_3912 nitrogenase cofactor biosynthesis
protein NifB;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Nitrogenase cofactor biosynthesis protein NifB;
PFAM: Radical SAM superfamily;
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_004280801.1"
/db_xref="GI:325294287"
/db_xref="GeneID:10269291"
/translation="MTVTTKIEKLIRKHPCYNKNAKDYGRIHLPVAPKCNVLCNFCNR
KYDCSNESRPGVTSQVLTPKEAALKTIFYREKLPYLTVAGIAGPGDPLANAEKTRQTF
NLIRKIYPDMHLCLSTNGLSLPENIDWIEKLGIKHVTVTVNGIDPAIVENIYSFAVKD
GKVYKNREMAELIIENQIKGIRKLLSRNILVKVNTVMIPGINDNHIIEIGKFMKELGI
YIYNVIPMIPVEGTVFWKKGIKKTPQKEKLKKIKNELEKLGLKIMNHCGRCRADAVGR
VRGEQKRKNKFITVASSNGYDLFEVFLEKSGKIVVCRSCELEKIEE"
misc_feature complement(72603..73157)
/locus_tag="Dester_0083"
/note="Radical SAM superfamily; Region: Radical_SAM;
pfam04055"
/db_xref="CDD:217866"
gene complement(73398..74324)
/locus_tag="Dester_0084"
/db_xref="GeneID:10269292"
CDS complement(73398..74324)
/locus_tag="Dester_0084"
/note="COGs: COG1242 Fe-S oxidoreductase;
InterPro IPR007197: IPR005911: IPR006638;
KEGG: saf:SULAZ_1702 radical SAM protein, family;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Radical SAM protein, family;
TIGRFAM: Conserved hypothetical protein CHP01212;
PFAM: Radical SAM superfamily;
TIGRFAM: radical SAM protein, TIGR01212 family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280802.1"
/db_xref="GI:325294288"
/db_xref="GeneID:10269292"
/translation="MERYYSYSRYLKNLFGERVYRVTVDAGFTCPNRDGFKGKGGCIY
CYSGSDYDPEKRRKEIEKQIAEGIERVKRRYKAKKFLVYFQAYTNTYAPPEVLKPIYD
EIKKFPEVVGLIIGTRPDCVLDETLKLINSYTEDYLVWIEYGLESSHFKSLRWMNRGH
GVSDFVDAVLRTRKFSKINICVHTILGLPTEDYDDMMETAKFLAALKVDGVKIHPLHV
IKNTALEKIYLEERFRLLTLEEYVDLVVDFIERLPKETVIQRITGEAPEDLLIGPEWC
SHKEKNRVINLIRRRFEERNTFQGTKCKFSKL"
misc_feature complement(73419..74321)
/locus_tag="Dester_0084"
/note="Predicted Fe-S oxidoreductase [General function
prediction only]; Region: COG1242"
/db_xref="CDD:224163"
misc_feature complement(73647..74204)
/locus_tag="Dester_0084"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(73677..73682,73770..73772,73893..73895,
73971..73979,74058..74063,74067..74069,74187..74195,
74199..74201))
/locus_tag="Dester_0084"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(74324..74704)
/locus_tag="Dester_0085"
/db_xref="GeneID:10269293"
CDS complement(74324..74704)
/locus_tag="Dester_0085"
/note="KEGG: ate:Athe_1048 hypothetical protein;
SPTR: ribosome maturation factor rimP"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280803.1"
/db_xref="GI:325294289"
/db_xref="GeneID:10269293"
/translation="MEEKLSREELIEVIAALMEEEGFEIYEVEADEEYLPDFLAVYTD
ENGENQQIAVQVEDCQTLEAEESEKKAKTIAEHCRRSGEGFLFVVPMECEELGKQKFE
EWELSDVAELIPIGIEFEEEEEEL"
gene 74773..75354
/locus_tag="Dester_0086"
/db_xref="GeneID:10269294"
CDS 74773..75354
/locus_tag="Dester_0086"
/note="COGs: COG0558 phosphatidylglycerophosphate
synthase;
InterPro IPR000462;
KEGG: saf:SULAZ_1542
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase;
SPTR: CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase;
PFAM: CDP-alcohol phosphatidyltransferase"
/codon_start=1
/transl_table=11
/product="CDP-alcohol phosphatidyltransferase"
/protein_id="YP_004280804.1"
/db_xref="GI:325294290"
/db_xref="GeneID:10269294"
/translation="MISSTDIKLKIQEFLKPFAELAGSIGVSPNVITILGFLFSIFSG
IAIAFSNLTLGIIFFTISGLCDMLDGIIARVNGKTTNFGSFLDSFLDRYADFFPLAGI
ATLGFYLQDFNLFIFSLLSIVGSFATSYARAKAESLGLECKVGLLERPERFFILLAGF
LTGFLVEFLSILAILSNFTAFQRLICAMEKLKK"
misc_feature 74815..75351
/locus_tag="Dester_0086"
/note="Phosphatidylglycerophosphate synthase [Lipid
metabolism]; Region: PgsA; COG0558"
/db_xref="CDD:223632"
gene 75327..76382
/locus_tag="Dester_0087"
/db_xref="GeneID:10269295"
CDS 75327..76382
/locus_tag="Dester_0087"
/note="COGs: COG1559 periplasmic solute-binding protein;
InterPro IPR003770;
KEGG: aae:aq_775 hypothetical protein;
PFAM: Uncharacterised protein family YceG-like;
SPTR: uncharacterized protein;
TIGRFAM: Uncharacterised protein family YceG-like;
PFAM: YceG-like family;
TIGRFAM: conserved hypothetical protein, YceG family"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase"
/protein_id="YP_004280805.1"
/db_xref="GI:325294291"
/db_xref="GeneID:10269295"
/translation="MRHGEVKKVKRFLVFVFIFILGVFFVFSYIRKSLNEKKQVDFSL
KIERNQKIKKVLEKLKNLKVIENDKILYFWIRFNHIPIRAGCYRLKGEYSPIEIIQEL
TKGTPCLTKFTIPEGANIFDVDRILSEKGFCKKGEVIKLSKDRNFLNSLKLKFLEGYV
FPDTYYVKESANCEEVLKIAVENFKKKVEPLFEGYNPPIIVKKGLGKVNKEKILTVAS
IVEKETSIPEEKPIIAGIIYNRLIKGMRLQCDPTVYYSYRLVGIEKRKLHKGDTLFPS
PYNTYYTKGLPPTPICNPGLESIEAAMFPKKTSYLYFVAEDGRHLFSKSYNHHLKLIR
KIYKYGEKRKEKTVRNR"
misc_feature 75531..76331
/locus_tag="Dester_0087"
/note="YceG-like family; Region: YceG; pfam02618"
/db_xref="CDD:217147"
misc_feature 75570..76325
/locus_tag="Dester_0087"
/note="proteins similar to Escherichia coli yceG; Region:
yceG_like; cd08010"
/db_xref="CDD:153433"
misc_feature order(75570..75572,75576..75593,75618..75620,75630..75632,
75651..75656,75663..75665,76068..76070,76074..76076,
76131..76133,76140..76142,76278..76283,76302..76304,
76311..76316,76323..76325)
/locus_tag="Dester_0087"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153433"
gene 76342..77502
/locus_tag="Dester_0088"
/db_xref="GeneID:10269296"
CDS 76342..77502
/locus_tag="Dester_0088"
/note="COGs: COG2074 2-phosphoglycerate kinase;
InterPro IPR005144;
KEGG: msv:Mesil_1353 ATP-cone domain protein;
PFAM: ATP-cone;
SPTR: 2-phosphoglycerate kinase;
PFAM: ATP cone domain; Zeta toxin"
/codon_start=1
/transl_table=11
/product="ATP-cone domain-containing protein"
/protein_id="YP_004280806.1"
/db_xref="GI:325294292"
/db_xref="GeneID:10269296"
/translation="MAKKEKRKRYVIDSSGEKYPFSKGVLVRSLTKTGLSINEAYNIA
DEVAAKFKGTITSEDLTNLVFKVLKNQYGKKIAEKYKQLVEEKEILVVEADGKTFVPF
SRGILAGSIRSAGVDTQEAFEIAKRIADYLRRKGKFRIKRAELRDITVKFLKRKLGKE
YAQRYLLWRQMKRLDKPVIILIGGATGVGKSKLAAELAGILEINRMASTDSIREVMRK
MISKELVPSIHVSSYEAGDVVYKFGEMEKEQKILYGFLDQTEKVLTGVEAVINRAIKE
NISLIVEGIHLIPGVFDRLKEKAYVIHLILTTLDEEIHKSRFKSREKVSQRTSKKYLR
NFKAIRLIQDYLYKTAAEKNIPIVENIDFDQTREKAIEIITEKMIREVGVKI"
misc_feature 76366..76581
/locus_tag="Dester_0088"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
misc_feature 76597..77499
/locus_tag="Dester_0088"
/note="2-phosphoglycerate kinase; Provisional; Region:
PRK04220"
/db_xref="CDD:179793"
misc_feature 76606..76863
/locus_tag="Dester_0088"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
gene 77499..77873
/locus_tag="Dester_0089"
/db_xref="GeneID:10269297"
CDS 77499..77873
/locus_tag="Dester_0089"
/note="COGs: COG0239 Integral membrane protein possibly
involved in chromosome condensation;
HAMAP: Camphor resistance CrcB protein;
InterPro IPR003691;
KEGG: sun:SUN_1279 camphor resistance protein CrcB;
PFAM: Camphor resistance CrcB protein;
SPTR: Protein crcB homolog;
TIGRFAM: Camphor resistance CrcB protein;
PFAM: CrcB-like protein;
TIGRFAM: crcB protein"
/codon_start=1
/transl_table=11
/product="CrcB-like protein"
/protein_id="YP_004280807.1"
/db_xref="GI:325294293"
/db_xref="GeneID:10269297"
/translation="MIFLYVGIGGFLGAISRFLISGFVQKFFGISFPVGTLAVNVFGS
FLIGFLAMLFENIIAPEWKAVFITGFLGALTTFSTFSYETVILIQEGLYQKAFLNVFL
NVILCLVATISGMTLFKLMFKV"
misc_feature 77499..77864
/locus_tag="Dester_0089"
/note="Integral membrane protein possibly involved in
chromosome condensation [Cell division and chromosome
partitioning]; Region: CrcB; COG0239"
/db_xref="CDD:223317"
gene 77893..78504
/locus_tag="Dester_0090"
/db_xref="GeneID:10269298"
CDS 77893..78504
/locus_tag="Dester_0090"
/note="COGs: COG2078 conserved hypothetical protein;
HAMAP: AMMECR1-domain protein;
InterPro IPR002733;
KEGG: tga:TGAM_1450 hypothetical protein;
PFAM: AMMECR1;
SPTR: Protein TGAM_1450;
TIGRFAM: AMMECR1;
PFAM: AMMECR1;
TIGRFAM: uncharacterized protein, PH0010 family"
/codon_start=1
/transl_table=11
/product="AMMECR1-domain-containing protein"
/protein_id="YP_004280808.1"
/db_xref="GI:325294294"
/db_xref="GeneID:10269298"
/translation="MELLTLKEGKFLVKLARKTIEDYLNFGIKIDPPENTPSRLFEER
GVFVTLKRYPSMELRGCIGYPEPVMPLVFATIDAAISAATRDPRFYPVRPEELRDILV
EVTVLTPPEPLDVPPERLPEEIKVGRDGLIVRCGLASGLLLPQVPIEWGWSEEEFLSQ
TCVKAGLPPNCWLDPRCQFYRFQGQIFTEVEPFSEVVEEKIIK"
misc_feature 77893..78495
/locus_tag="Dester_0090"
/note="AMMECR1; Region: AMMECR1; cl00911"
/db_xref="CDD:242186"
misc_feature 77920..78453
/locus_tag="Dester_0090"
/note="AmmeMemoRadiSam system protein A; Region:
AmmeMemoSam_A; TIGR04335"
/db_xref="CDD:234550"
gene 78543..79163
/locus_tag="Dester_0091"
/db_xref="GeneID:10269299"
CDS 78543..79163
/locus_tag="Dester_0091"
/note="COGs: COG1994 Zn-dependent protease;
InterPro IPR008915;
KEGG: tai:Taci_0751 peptidase M50;
PFAM: peptidase M50;
SPTR: peptidase M50;
PFAM: peptidase family M50"
/codon_start=1
/transl_table=11
/product="peptidase M50"
/protein_id="YP_004280809.1"
/db_xref="GI:325294295"
/db_xref="GeneID:10269299"
/translation="MHEWIMNFLIALPAILWAITIHEFAHGYIAYKLGDPTPKITGRL
TLNPFAHLDIIGFLALVLVHFGWAKPVMVNPNNFRIDPRKGEILVASGGPLANFLSAF
VSVLVLKYFPFSSLPFNVSEPLFLIFKYSIFINVAFGIFNLLPIPPLDGSKILEALLP
PKLYYSYKKIEPYGPIILIILVISPLLNWILVPLVNMVINLMLMIT"
sig_peptide 78543..78596
/locus_tag="Dester_0091"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 78564..79064
/locus_tag="Dester_0091"
/note="Uncharacterized homologs of Site-2 protease (S2P),
zinc metalloproteases (MEROPS family M50) which cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of the...; Region:
S2P-M50_like_1; cd06158"
/db_xref="CDD:100079"
misc_feature 78570..79064
/locus_tag="Dester_0091"
/note="Peptidase family M50; Region: Peptidase_M50;
pfam02163"
/db_xref="CDD:216910"
misc_feature order(78606..78611,78618..78620,78966..78968,78990..78992)
/locus_tag="Dester_0091"
/note="active site"
/db_xref="CDD:100079"
misc_feature 78966..78977
/locus_tag="Dester_0091"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100079"
gene 79177..80763
/locus_tag="Dester_0092"
/pseudo
/db_xref="GeneID:10269300"
gene 80845..82815
/locus_tag="Dester_0093"
/db_xref="GeneID:10269301"
CDS 80845..82815
/locus_tag="Dester_0093"
/EC_number="3.5.2.9"
/note="COGs: COG0145 N-methylhydantoinase A/acetone
carboxylase beta subunit;
InterPro IPR008040: IPR002821;
KEGG: pmx:PERMA_1472 hydantoin utilization protein A
(ORF2);
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase,
N-terminal;
PRIAM: 5-oxoprolinase (ATP-hydrolyzing);
SPTR: Hydantoin utilization protein A (ORF2);
PFAM: Hydantoinase/oxoprolinase; Hydantoinase/oxoprolinase
N-terminal region"
/codon_start=1
/transl_table=11
/product="5-oxoprolinase (ATP-hydrolyzing)"
/protein_id="YP_004280810.1"
/db_xref="GI:325294296"
/db_xref="GeneID:10269301"
/translation="MVIIGVDTGGTFTDFIYKDGDKWGVFKTLSTPENPAKAVLFGIE
KIAKDKPKNITHGSTVATNAVLERKGAKTAFITNKGFEDILFIGRQNREKLYDLHYRK
NPPLVQKELSFGVKGRIIYTGEEIEKLDEAEIEKVAKILKEKGVESVAVSFLFSFLNP
EHEEIVERVLKKLGFEVSISSKIVPEFREYERSSTSVINAYVMPKMKGYISFLENHLG
KEDRLRIMQSNGGVISSETVKEQPVRTILSGPAGGVAGAWKIGKLAGYEKLITFDMGG
TSTDVSLIDEKPIITTESKIEGYPVKVPVIDIHTVGAGGGSIARIDSGGALTVGPESA
GADPGPICYGKGEEITITDANLFIGRLISDYFLGGNMKLQFERIVPYFEEMAKKAGIT
PLELAEGILNIANTKMEKAIRVISVERGYNPQEFSLFSFGGAGGLHAAFLAKALGIPR
VIVPQNPGILSAMGMVLSDIVKDYSLTVMLTGKSVNRENIERFFKVLEERAVEDLKRE
GISENKIKVEKYLDMRYKGQSFELIVPFVDDFIEAFHKEHERVYGYSSRKMEVEVVNV
RIRAIGETEKPELKKFNLVSEKVPEGALLEKRKVYFDGKWIETSVYNREKLLPGNRIE
GAAIVVEYSSTTVIPPFAKAFVDEYKNLIIEV"
misc_feature 80845..82809
/locus_tag="Dester_0093"
/note="N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism];
Region: HyuA; COG0145"
/db_xref="CDD:223223"
misc_feature 80854..81366
/locus_tag="Dester_0093"
/note="Hydantoinase/oxoprolinase N-terminal region;
Region: Hydant_A_N; pfam05378"
/db_xref="CDD:218571"
misc_feature 81418..82266
/locus_tag="Dester_0093"
/note="Hydantoinase/oxoprolinase; Region: Hydantoinase_A;
pfam01968"
/db_xref="CDD:216816"
gene 82893..83189
/locus_tag="Dester_0094"
/db_xref="GeneID:10269302"
CDS 82893..83189
/locus_tag="Dester_0094"
/note="KEGG: taf:THA_599 hypothetical protein;
SPTR: uncharacterized protein;
manually curated"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280811.1"
/db_xref="GI:325294297"
/db_xref="GeneID:10269302"
/translation="MRAFAAESEKLNSEELKYSWDKNRTKSVLVARRMMYDHPKKVFH
DYKRDYLKEVFLKHYNLFNRVNRNFWKIILGISNEEIKRKAERSFRETCKIWNY"
gene 83125..83751
/locus_tag="Dester_0095"
/db_xref="GeneID:10269303"
CDS 83125..83751
/locus_tag="Dester_0095"
/note="InterPro IPR014942;
KEGG: aae:aq_aa25 hypothetical protein;
PFAM: Protein of unknown function DUF1814;
SPTR: Uncharacterized protein aq_aa25;
PFAM: Domain of unknown function (DUF1814)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280812.1"
/db_xref="GI:325294298"
/db_xref="GeneID:10269303"
/translation="MKRLKEKQREVLEKLVKSGITEGFYLAGGTALLIRYGHRESDDF
DFFSFSQNKNLDFFRRIQKIPSEFLKVEELKSDTLIFYLNSVKFSFFEYPYPVLKFPD
RFEKLGIYVASDEDIAAMKAVAVIQRGSKKDFFDLYFLIKKNNWELEKIITFCKEKYG
NVFPEPAFLKALTYFKEAELESYKDIDVEWNSIKNFFIKTVTDYVTSL"
misc_feature 83155..>83553
/locus_tag="Dester_0095"
/note="Nucleotidyl transferase of unknown function
(DUF1814); Region: DUF1814; pfam08843"
/db_xref="CDD:220039"
gene 83772..85346
/locus_tag="Dester_0096"
/db_xref="GeneID:10269304"
CDS 83772..85346
/locus_tag="Dester_0096"
/EC_number="3.5.2.9"
/note="COGs: COG0146 N-methylhydantoinase B/acetone
carboxylase alpha subunit;
InterPro IPR003692;
KEGG: pmx:PERMA_1470 5-oxoprolinase (5-oxo-L-prolinase)
(pyroglutamase) (5-OPase);
PFAM: Hydantoinase B/oxoprolinase;
PRIAM: 5-oxoprolinase (ATP-hydrolyzing);
SPTR: 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase)
(5-OPase);
PFAM: Hydantoinase B/oxoprolinase"
/codon_start=1
/transl_table=11
/product="5-oxoprolinase (ATP-hydrolyzing)"
/protein_id="YP_004280813.1"
/db_xref="GI:325294299"
/db_xref="GeneID:10269304"
/translation="MQNVNPILLEIFKNRFSSIAEEMGVVLQRTSFSPNIKERRDFSC
AIFNENGEMVAQAAHIPVHLGSMPLSVKSVIESLELKEGDMAILNDPFRGGTHLPDIT
IVAPVYTGGDKPAFYVANRAHHADIGGISPGSMPLSNSIFQEGLIIPPVKIVENGEID
EKLLDFIKANVRTPEEREGDFAAQIMANRVGIKRLKELINKYSLETVKGYSKALISYS
ERIMRETIKSIPDGVYEFEDFMEDDGSGNSDIKIKVKLTIDGEQALVDFSESDFQVEG
SINSVKAITLSAVLYVFRCLVKEDIPTNAGCLAPVEVITKEGTIVDAKFPAAVSAGNV
ETSQRIVDVLLGALSEALPDFIPAASQGTMNNVTIGGFNPETGAPFTYYETIGGGMGA
SAKGDGESAIHSHMTNTLNTPVEALEFAYPFLVTEYSVRRNSGGDGLFKGGNGIVREF
KFLTDVEVTVISERRRVPPYGLFGGEPGRTGENWIIKNGEKIRKDGKFTEKLSKGDVL
RIETPGGGGFGQKVVK"
misc_feature 83778..85328
/locus_tag="Dester_0096"
/note="N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism];
Region: HyuB; COG0146"
/db_xref="CDD:223224"
misc_feature 83781..85334
/locus_tag="Dester_0096"
/note="Hydantoinase B/oxoprolinase; Region:
Hydantoinase_B; pfam02538"
/db_xref="CDD:217092"
gene 85408..87525
/locus_tag="Dester_0097"
/db_xref="GeneID:10269305"
CDS 85408..87525
/locus_tag="Dester_0097"
/note="COGs: COG0210 Superfamily I DNA and RNA helicase;
InterPro IPR000212;
KEGG: toc:Toce_1758 ATP-dependent DNA helicase PcrA;
PFAM: DNA helicase, UvrD/REP type;
SPTR: ATP-dependent DNA helicase PcrA;
PFAM: UvrD/REP helicase"
/codon_start=1
/transl_table=11
/product="UvrD/REP helicase"
/protein_id="YP_004280814.1"
/db_xref="GI:325294300"
/db_xref="GeneID:10269305"
/translation="MESLLKGLNPQQKKAVTYFDSPLLILAGAGSGKTRVITYKIAYM
IEKLRYKPERILAVTFTNKAAKEMKERVEKLVGNSAPVLVSTFHSFCVRLLRTHSVRV
GYQPNFLILDTDDKKRLVREIIRDMNLDSELYNPSAIASVISNIKNGLYSPESMTTYY
DRIKDIFEIYNKRLKENNAFDFDDLLIYGRELLKSEELQRKYSDFFQYVLIDEYQDTN
RIQYEIARALTKDKGNICVVGDEDQCIYTWRGANIENILSFEKDFQNAKIIKLEKNYR
CTKVILDAANAVIENNKLRKGKKLYTDNPAGEPIRLYVAESDVDEARFVSKTVKQFLK
KGVKPADIAIFYRTNSQSRVVEDALRREGISYKIVGGLKFYERKEIKDIIAYLRVVLF
EKDTISLLRILNVPKRGLGSAVEKKLKEILQQETSNIGALKLLSDELRMEKQKKAIED
LIDIVEEIRKKLYNLKPYDLIKFITVSIGYEKYLRKEHPEDWESRVENIKELGNTIQE
FSEREKLQGEDLYLEFLSTITLSSDQDELDEEDEKVTLMTVHASKGLEFPIVFITGLE
EGLFPHIKSLDTKEEIEEERRLFYVAITRAKRLLSLSYAKKRRSFGSYKDTRKSRFLD
EVPTHLIKEVKRKVAKKESERRNAIDFEVVQKKKPKLVFHQKFGKGVVKRVEGVGESA
KVTAFFANYGEKTIVMKFLKVIG"
misc_feature 85414..87513
/locus_tag="Dester_0097"
/note="DNA-dependent helicase II; Provisional; Region:
uvrD; PRK11773"
/db_xref="CDD:236976"
misc_feature 85450..85680
/locus_tag="Dester_0097"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature <87037..87213
/locus_tag="Dester_0097"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:222209"
gene 87548..88696
/locus_tag="Dester_0098"
/db_xref="GeneID:10269306"
CDS 87548..88696
/locus_tag="Dester_0098"
/EC_number="2.6.1.45"
/note="COGs: COG0075 serine-pyruvate aminotransferase/
aspartate aminotransferase;
InterPro IPR000192;
KEGG: sul:SYO3AOP1_1504 aminotransferase class V;
PFAM: Aminotransferase, class V/Cysteine desulfurase;
PRIAM: serine--glyoxylate transaminase;
SPTR: Aminotransferase class V;
PFAM: Aminotransferase class-V"
/codon_start=1
/transl_table=11
/product="serine--glyoxylate transaminase"
/protein_id="YP_004280815.1"
/db_xref="GI:325294301"
/db_xref="GeneID:10269306"
/translation="MKPIKQRLLTPGPTVVPERVLEALGKSTLYHRSPKFKEIFLEAR
KRLKKLFRTEGEVLILTSSGTGAMEAAVTNLFNPGDSAVVVVGGKFGERWKELCETFG
VKPIVIEVEWGKSVRLEDIEEALKANSDVKGVLVQICETSTGTIHDVKGIGDLLKNYP
DVLLIADGITAYGVYDIPTDEWGIDVGITGSQKALMTPPGLAIISLNEKAQKRLLEVE
TRSYYFDLKKELKKQQSGQTAYTAGVNLVVALNEALKMIEEEGLENVAKRHERLAQAT
RAGVRALGLELLSENPANGVTAVLSPKGINGQDIVKIAREKYGITIAGGQEHLKGKIF
RLSHMGYVDIFDILTGLEVVEFALYELGYRNFKFGDSVSAAMETYQNL"
misc_feature 87566..88621
/locus_tag="Dester_0098"
/note="Alanine-glyoxylate aminotransferase (AGAT) family.
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to alanine-glyoxylate
aminotransferase (AGAT); Region: AGAT_like; cd06451"
/db_xref="CDD:99744"
misc_feature 87578..88558
/locus_tag="Dester_0098"
/note="Aminotransferase class I and II; Region:
Aminotran_1_2; pfam00155"
/db_xref="CDD:215756"
misc_feature order(87608..87610,87617..87619,87638..87640,87644..87646,
87731..87736,87752..87754,87824..87826,87833..87835,
87845..87850,88121..88123,88142..88144,88214..88216,
88265..88276,88490..88492)
/locus_tag="Dester_0098"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99744"
misc_feature order(87734..87742,87815..87817,87968..87970,88046..88048,
88052..88054,88121..88126)
/locus_tag="Dester_0098"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99744"
misc_feature 88124..88126
/locus_tag="Dester_0098"
/note="catalytic residue [active]"
/db_xref="CDD:99744"
gene 88729..89151
/locus_tag="Dester_0099"
/db_xref="GeneID:10269307"
CDS 88729..89151
/locus_tag="Dester_0099"
/note="COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans
isomerase 2;
InterPro IPR001179;
KEGG: nam:NAMH_0330 fkbp-type peptidyl-prolyl cis-trans
isomerase SlyD;
PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type;
SPTR: peptidyl-prolyl cis-trans isomerase;
PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase"
/codon_start=1
/transl_table=11
/product="FKBP-type peptidylprolyl isomerase"
/protein_id="YP_004280816.1"
/db_xref="GI:325294302"
/db_xref="GeneID:10269307"
/translation="MNYIYTVEYTLRNSEGRVIDTSQGREPFRFVSGRNEVIPGFERE
VSSMEVGEEKTFTLSPQEAYGERREELIETLPRQYFQGVELQKGGVLYGQTPDGQTVM
VTVLDFNDETVTIDHNHPLAGEALTFTVKLLNKEEFNG"
misc_feature 88744..89139
/locus_tag="Dester_0099"
/note="FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover,
chaperones]; Region: SlpA; COG1047"
/db_xref="CDD:223976"
misc_feature 88744..>88929
/locus_tag="Dester_0099"
/note="FKBP-type peptidyl-prolyl cis-trans isomerase;
Region: FKBP_C; pfam00254"
/db_xref="CDD:215821"
gene 89151..89735
/locus_tag="Dester_0100"
/db_xref="GeneID:10269308"
CDS 89151..89735
/locus_tag="Dester_0100"
/note="COGs: COG1853 Conserved protein/domain typically
associated with flavoprotein oxygenase DIM6/NTAB family;
InterPro IPR002563;
KEGG: pmx:PERMA_1659 flavin reductase domain protein,
FMN-binding;
PFAM: Flavin reductase-like, FMN-binding;
SPTR: Flavin reductase domain protein, FMN-binding;
PFAM: Flavin reductase like domain"
/codon_start=1
/transl_table=11
/product="flavin reductase domain-containing FMN-binding
protein"
/protein_id="YP_004280817.1"
/db_xref="GI:325294303"
/db_xref="GeneID:10269308"
/translation="MKVAKVGETDQKLISKLIFNTVVPRPIAWITTVSNEGVVNLAPF
SFYNAVTTKPPIVVVSIGKRKDGTRKDTGRNIRETGEFVINVVSEEFLNKMVETGNDF
PPEESEAEKIGIALEPSLMVKPPRVKGVPAALECRCQEIVEIGDTPMDLVIGEVVAIH
YEPSILETQKGIVGRLGGKRYCIVREEINISDLD"
misc_feature 89214..89642
/locus_tag="Dester_0100"
/note="Conserved protein/domain typically associated with
flavoprotein oxygenases, DIM6/NTAB family [General
function prediction only]; Region: COG1853"
/db_xref="CDD:224766"
gene complement(89737..90639)
/locus_tag="Dester_0101"
/db_xref="GeneID:10269309"
CDS complement(89737..90639)
/locus_tag="Dester_0101"
/EC_number="3.1.21.4"
/note="InterPro IPR007637;
KEGG: mja:MJ_0600 type II R/M system restriction enzyme 2;
PFAM: Restriction endonuclease, type II, DpmII-like;
PRIAM: type II site-specific deoxyribonuclease;
SPTR: Restriction endonuclease R.IB;
PFAM: DpnII restriction endonuclease"
/codon_start=1
/transl_table=11
/product="type II site-specific deoxyribonuclease"
/protein_id="YP_004280818.1"
/db_xref="GI:325294304"
/db_xref="GeneID:10269309"
/translation="MSCLNLYGNTEKFFDYFFRTLKDNINTWDYFVNWNKVRENLRKI
EKELHLLDYLIGKKNLEDELKSLIREYPKVTRAIPYLIALRKNRIQLLTDIKSFQYRN
FNFGKEEYSEGEIDKIVEFFVKCGLKEVFQTEIKNVADYVFGVEVGLDSNGRKNRTGK
LMESIVEFFIRDITNELNADFISQANREKIKKKWNLEVKLDKADRRIDFAVLYQDTLF
FIEVNFYSGGGSKLKSTAGEYIEISKFWKEQEIIFVWITDGKGWLSAKAPLIEYFEKS
NYLLNLEMLKEGCLKEVILKETKN"
misc_feature complement(89758..90600)
/locus_tag="Dester_0101"
/note="DpnII restriction endonuclease; Region: DpnII;
pfam04556"
/db_xref="CDD:218147"
gene complement(90639..91514)
/locus_tag="Dester_0102"
/db_xref="GeneID:10269310"
CDS complement(90639..91514)
/locus_tag="Dester_0102"
/note="COGs: COG0863 DNA modification methylase;
InterPro IPR002941;
KEGG: emi:Emin_0686 DNA methylase N-4/N-6
domain-containing protein;
PFAM: DNA methylase N-4/N-6;
SPTR: DNA methylase N-4/N-6 domain protein;
PFAM: DNA methylase"
/codon_start=1
/transl_table=11
/product="DNA methylase N-4/N-6 domain-containing protein"
/protein_id="YP_004280819.1"
/db_xref="GI:325294305"
/db_xref="GeneID:10269310"
/translation="MLKAYYKRKGIRLYLDDALNVLDKIPDESVDMVFADPPYNLSND
GFTCHAGKRVSVNKGEWDRSQGFEKDFNFHYQWIEKCKRILKPNGTIWISGTYHSIYL
CGFSLQKQGWHIINEICWYKPNASPNLSCRMFTASHETLLWAKKKKEAKHTFNYDLAK
NGSWEEDLLKKPNKQMRSVWAIPTPKKWEKRYGKHPTQKPELLLKRIILLTTKPGDIV
LDPFCGSGTTGVVAIRYGRRFVGIDFNEEYLKDLAIPRIEDELKAKQINRERFLKEEK
EIEYDANNYFEGVFT"
misc_feature complement(90654..91499)
/locus_tag="Dester_0102"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:223931"
misc_feature complement(90765..91427)
/locus_tag="Dester_0102"
/note="DNA methylase; Region: N6_N4_Mtase; pfam01555"
/db_xref="CDD:216568"
misc_feature complement(<90645..90863)
/locus_tag="Dester_0102"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(90690..90695,90783..90788,90834..90854))
/locus_tag="Dester_0102"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(91534..92232)
/locus_tag="Dester_0103"
/db_xref="GeneID:10269311"
CDS complement(91534..92232)
/locus_tag="Dester_0103"
/EC_number="4.1.1.23"
/note="COGs: COG0284 Orotidine-5'-phosphate decarboxylase;
InterPro IPR001754: IPR014732;
KEGG: sde:Sde_2141 orotidine-5'-phosphate decarboxylase;
PFAM: Orotidine 5'-phosphate decarboxylase, core;
PRIAM: Orotidine-5'-phosphate decarboxylase;
SPTR: Orotidine 5'-phosphate decarboxylase;
TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily
1, core;
PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family;
TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily
1"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_004280820.1"
/db_xref="GI:325294306"
/db_xref="GeneID:10269311"
/translation="MIIVALDFDSKEKALSLVDRIKGKISHFKVGLELFSRCGIEVVK
EISYKNCKVFLDLKYHDIPNTVKSAAKVAVEAGVWMYNIHALGGFEFMKSVAEFNKEY
AQKIGVERPLLIAVTILTSMGNEDLKQIGINTDVETEVLKLAELAKKAGLDGIVCSAM
EVKKIKENLGEDFLTVTPGIRPAWASKDDQKRIVTPADAVKLGTDYMVIGRPITRAED
PKEAAEKILEEINS"
misc_feature complement(91555..92229)
/locus_tag="Dester_0103"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:240076"
misc_feature complement(order(91600..91605,91699..91701,91873..91878,
92059..92061,92065..92067,92140..92142,92146..92148,
92212..92214,92218..92220))
/locus_tag="Dester_0103"
/note="active site"
/db_xref="CDD:240076"
misc_feature complement(order(91600..91602,91816..91818,91876..91878,
91930..91932,91975..91983,92026..92031,92038..92043,
92050..92055,92059..92064,92131..92136,92140..92142))
/locus_tag="Dester_0103"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240076"
gene complement(92235..93518)
/locus_tag="Dester_0104"
/db_xref="GeneID:10269312"
CDS complement(92235..93518)
/locus_tag="Dester_0104"
/EC_number="1.1.1.3"
/note="COGs: COG0460 Homoserine dehydrogenase;
InterPro IPR005106: IPR001342: IPR002912;
KEGG: tye:THEYE_A1986 homoserine dehydrogenase (HDH):
ThrA, MetL;
PFAM: Homoserine dehydrogenase, catalytic;
Aspartate/homoserine dehydrogenase, NAD-binding; Amino
acid-binding ACT;
SPTR: Homoserine dehydrogenase;
PFAM: Homoserine dehydrogenase, NAD binding domain;
Homoserine dehydrogenase; ACT domain"
/codon_start=1
/transl_table=11
/product="homoserine dehydrogenase"
/protein_id="YP_004280821.1"
/db_xref="GI:325294307"
/db_xref="GeneID:10269312"
/translation="MESLKVGIIGCGTVGSGVVKLLTGNKKVISERIGKDIEIAFVAD
RDVEKVKRLGIPEEKIVDDGFKALNIECDVVVELIGGTTIAKDIVSLAIEKGKHVVTA
NKALLADYGEELFKKAKKKGVSLKFEASVGGGIPVIKALREGLVGNRIKRIYGIINGT
ANYILTEMTEKGITFDEALRKAQELGYAEADPTLDVEGYDAAHKIAILSTLSFCRWVK
TENVYVRGIKDITPVDIELAREFGYKVKLLAISKLVDEELEVRVHPTMIPEDHILSNV
NGVFNACLIEGDFVGDTLYYGKGAGEKPTASAVVSDIVDIAIGNKYFVPECLFKEGDK
PKIKAPEEFISSFYLRFTAVDKPGVLAKISKILADYGISIKMALQKSININGGVPVVM
TTHPACKSNVQKAIEEIDKLDVILKPTFVCMIEEL"
misc_feature complement(92244..93518)
/locus_tag="Dester_0104"
/note="homoserine dehydrogenase; Provisional; Region:
PRK06349"
/db_xref="CDD:235783"
misc_feature complement(93135..93491)
/locus_tag="Dester_0104"
/note="Homoserine dehydrogenase, NAD binding domain;
Region: NAD_binding_3; pfam03447"
/db_xref="CDD:217564"
misc_feature complement(92580..93113)
/locus_tag="Dester_0104"
/note="Homoserine dehydrogenase; Region: Homoserine_dh;
pfam00742"
/db_xref="CDD:216092"
misc_feature complement(92244..92480)
/locus_tag="Dester_0104"
/note="ACT_HSDH_Hom CD includes the C-terminal ACT domain
of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH)
and related domains; Region: ACT_HSDH-Hom; cd04881"
/db_xref="CDD:153153"
gene complement(93527..94735)
/locus_tag="Dester_0105"
/db_xref="GeneID:10269313"
CDS complement(93527..94735)
/locus_tag="Dester_0105"
/EC_number="2.6.1.83"
/note="COGs: COG0436 Aspartate/tyrosine/aromatic
aminotransferase;
InterPro IPR004839;
KEGG: tye:THEYE_A1985 hypothetical aminotransferase YfdZ;
PFAM: Aminotransferase, class I/II;
PRIAM: LL-diaminopimelate aminotransferase;
SPTR: Hypothetical aminotransferase YfdZ;
PFAM: Aminotransferase class I and II"
/codon_start=1
/transl_table=11
/product="LL-diaminopimelate aminotransferase"
/protein_id="YP_004280822.1"
/db_xref="GI:325294308"
/db_xref="GeneID:10269313"
/translation="MSKFQFARIDRLPPYVFAVVNDLKTKMRRAGEDIVDLGMGNPDL
PTPQHIVDKLCEAAQNPKNHRYSQTKGLFKLREALALWYKRKYNVDLDPETEVITTIG
SKEGLAHLALTLINPGDVAIVPSPAYPIHPYSIIIAGGDVRSVPLIPGEEEGFFESIV
KAYKESWPRPKLLILNFPHNPTTACVDLPFFEKIVDFAKDNNLIVIQDIAYAEISFDG
YVPPSILQVKGAKDVAVEFYSLSKSYSMAGWRVGFAAGNKEIIHALYRMKSYLDYGMF
QPIQIAAIIALKGDQSCVEEYRKVYGRRRNVLVEGLNRIGWKVEKPKATMFVWAEIPE
KFQSMGSLEFAKMLLLDGKVAVSPGIGFGEYGDKYVRFALVENELRIKQAIRGIKRAF
EKYGLRNINV"
misc_feature complement(93545..94723)
/locus_tag="Dester_0105"
/note="aminotransferase; Validated; Region: PRK08175"
/db_xref="CDD:181268"
misc_feature complement(93566..94633)
/locus_tag="Dester_0105"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(93986..93988,94010..94015,94019..94021,
94103..94105,94196..94198,94352..94354,94424..94432))
/locus_tag="Dester_0105"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(93890..93892,93899..93901,93986..93994,
94124..94126,94322..94324,94421..94423))
/locus_tag="Dester_0105"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(94010..94012)
/locus_tag="Dester_0105"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 95025..95801
/locus_tag="Dester_0106"
/db_xref="GeneID:10269314"
CDS 95025..95801
/locus_tag="Dester_0106"
/note="COGs: COG0614 ABC-type Fe3+-hydroxamate transport
system periplasmic component;
InterPro IPR002491;
KEGG: tye:THEYE_A1173 ABC-type Fe3+-siderophores transport
system, periplasmic component,
PFAM: Periplasmic binding protein;
SPTR: ABC-type Fe3+-siderophores transport system,
periplasmic component, ;
manually curated;
PFAM: Periplasmic binding protein"
/codon_start=1
/transl_table=11
/product="periplasmic binding protein"
/protein_id="YP_004280823.1"
/db_xref="GI:325294309"
/db_xref="GeneID:10269314"
/translation="MRYFLAVLLALLLVLPAYSFNKVVSLSPAITEIIYYVGADSKLV
GDTVFCDYPDDAKKKVKVGGIVNPNVEKIYSLHPDLVIASNLTPKATLKKLETLGIKV
IVLRLISLKDIENAIEVIGNTLSNNGEVKKKEFIKSLEKKAKTLSTCLNGKNLIILIS
FQPIYVAGSKSFIGEIFSLSKAKVVPDISFGVVSNEFIVMNKPDLALLSFKGNKLKLA
EKFLRKFSIKSIFVTPDNLLHPSPRILKSLEEVEENICRK"
sig_peptide 95025..95081
/locus_tag="Dester_0106"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 95085..95783
/locus_tag="Dester_0106"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:223687"
misc_feature 95085..95648
/locus_tag="Dester_0106"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:241735"
misc_feature order(95301..95306,95313..95315,95388..95390)
/locus_tag="Dester_0106"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238347"
gene 95789..96697
/locus_tag="Dester_0107"
/db_xref="GeneID:10269315"
CDS 95789..96697
/locus_tag="Dester_0107"
/note="COGs: COG0609 ABC-type Fe3+-siderophore transport
system permease component;
InterPro IPR000522;
KEGG: glo:Glov_3558 transport system permease;
PFAM: Bacterial transport system permease;
SPTR: transport system permease;
PFAM: FecCD transport family"
/codon_start=1
/transl_table=11
/product="transport system permease"
/protein_id="YP_004280824.1"
/db_xref="GI:325294310"
/db_xref="GeneID:10269315"
/translation="MQKIILLLIVISSFAFSLFWNLSAFDKTILIDIRLPELLLAFSV
GGLLGMGGGIFQGVFRNPLADPYILGVSAGGALGATISAWQGINIEFGALLGGLLTVF
LISIVSFFLMDNLKILLFGVGINAFLSAFILFLFAVIPFYSVQDAFFFTLGYIPSIEI
ETALRYLLLSLLALLVFLPVAFRLDALSLGDELSFFSGISPNKEKFFYIIVISCFVSL
FVAKAGIIGFVGIVVPHAVRFLGFRLYKEVLPLSFILGGSILVFSQGLAKNIFSPVVL
PVGVITSIIGVPAFLYIVWRYSVVRS"
sig_peptide 95789..95860
/locus_tag="Dester_0107"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 95948..96670
/locus_tag="Dester_0107"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature order(95954..95956,95966..95974,96320..96325,96329..96337,
96341..96346,96350..96367,96371..96379,96500..96502,
96521..96523)
/locus_tag="Dester_0107"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature order(95969..95971,95975..95977,95990..95992,96134..96136,
96140..96145,96152..96157,96164..96169,96176..96178,
96185..96190,96194..96196,96230..96235,96242..96244,
96470..96472,96626..96628,96635..96640,96647..96649,
96656..96661,96668..96670)
/locus_tag="Dester_0107"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(96194..96196,96272..96274,96446..96448,96458..96460,
96590..96592,96617..96619)
/locus_tag="Dester_0107"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature <96341..96676
/locus_tag="Dester_0107"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:236720"
gene 96684..97430
/locus_tag="Dester_0108"
/db_xref="GeneID:10269316"
CDS 96684..97430
/locus_tag="Dester_0108"
/note="COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores
transport systems ATPase components;
InterPro IPR003439: IPR003593;
KEGG: ton:TON_0298 ABC-type iron(III)-siderophore
transport system, ATPase component;
PFAM: ABC transporter-like;
SMART: ATPase, AAA+ type, core;
SPTR: ABC-type iron(III)-siderophore transport system,
ATPase component;
PFAM: ABC transporter"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_004280825.1"
/db_xref="GI:325294311"
/db_xref="GeneID:10269316"
/translation="MLEVKNLSYRNILYDISFKVKRGSVVGLIGKNGSGKTTLLRCIG
GFLKSSGLITLDGEDLNNFSTRKRVLKVNYFPQILEISFPYTVFEFLLSSLVPLKGFF
PSLADEDIKKVESYLKKLNIYHLKDRLFSTLSGGERIKVLITRLLLIDPDVYLFDEPA
AFLDVKVLPFLAEIIEKLKKAEKIVIITAHDLNFLVDIADQFLGLKNGRLFFTGGRKE
FLENVEHLFDTKLKVLKLKEEVFIKSNLRR"
misc_feature 96684..97370
/locus_tag="Dester_0108"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:224045"
misc_feature 96690..97325
/locus_tag="Dester_0108"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature 96771..96794
/locus_tag="Dester_0108"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature order(96780..96785,96789..96797,96912..96914,97152..97157,
97251..97253)
/locus_tag="Dester_0108"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature 96903..96914
/locus_tag="Dester_0108"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature 97080..97109
/locus_tag="Dester_0108"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 97140..97157
/locus_tag="Dester_0108"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 97164..97175
/locus_tag="Dester_0108"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 97239..97259
/locus_tag="Dester_0108"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 97434..99206
/locus_tag="Dester_0109"
/db_xref="GeneID:10269317"
CDS 97434..99206
/locus_tag="Dester_0109"
/note="COGs: COG4206 Outer membrane cobalamin receptor
protein;
InterPro IPR012910: IPR000531;
KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor
for cobalamin and Fe transport;
PFAM: TonB-dependent receptor, plug; TonB-dependent
receptor, beta-barrel;
SPTR: TonB-dependent outer membrane receptor for cobalamin
and Fe transport;
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent
receptor"
/codon_start=1
/transl_table=11
/product="TonB-dependent receptor plug"
/protein_id="YP_004280826.1"
/db_xref="GI:325294312"
/db_xref="GeneID:10269317"
/translation="MRKRLLVLSLLLISGASAEEIPEVQVTATRVEVPVEHVGDDVDI
ITQEEIKKYGFTSIADVLKYVAGVHISSNGGFGQTTSVYMLGLPTKYILVMIDGVPVN
DPSSIDSQANFVYIDLNNVERIEVLKGAQGALYGSEAIAGVINIITKKPDKNELKLNF
EGGKYKTFKENLYSALKLKDGYLSLSFENFKTNGFSATNDKSPNYESDSDKYSYRSGW
ISYGWNLTDTVKITGNFKLKEGTVEYDSSWTPDAYTTYNNYFAGVKIDKIFSDNFMIT
TKLSNNKEVRNYGRDIIGITRYVSIQPIYYLLDNLFLTGGINYKQEITNTSGAPNLHT
KSAFFEIHTDYLGVHNTFAIRRDFHSQFGAKTTYKVSSAYDFKETGTTLKGQYGTGFK
APNISQLYGYGGNPDLRPEISEGWILGIKQGINFQKLNGNVEVNYFKNHVWDMIDWYP
PGSWTGSYRNVNKATTEGAEVKINADITDWLNVYGTYTHLHTSKDLRARRPEISYTLG
FNSVYQKIKFSAWAEHYSDREDSNGKTLPSFTTYNCYASYQLNDRVNFYLKGINLTDK
DYELAYGYNTMGRAFFAGVNLNFR"
sig_peptide 97434..97487
/locus_tag="Dester_0109"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 97500..99200
/locus_tag="Dester_0109"
/note="Outer membrane cobalamin receptor protein [Coenzyme
metabolism]; Region: BtuB; COG4206"
/db_xref="CDD:226664"
misc_feature 97557..99200
/locus_tag="Dester_0109"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature order(97557..97583,97611..97640,97677..97694,97713..97736,
97785..97817,97851..97877)
/locus_tag="Dester_0109"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature order(98253..98255,98334..98336)
/locus_tag="Dester_0109"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene 99261..100235
/locus_tag="Dester_0110"
/db_xref="GeneID:10269318"
CDS 99261..100235
/locus_tag="Dester_0110"
/EC_number="4.1.3.34"
/note="COGs: COG2301 Citrate lyase beta subunit;
InterPro IPR005000;
KEGG: cph:Cpha266_2198 HpcH/HpaI aldolase;
PFAM: HpcH/HpaI aldolase;
PRIAM: Citryl-CoA lyase;
SPTR: HpcH/HpaI aldolase;
PFAM: HpcH/HpaI aldolase/citrate lyase family"
/codon_start=1
/transl_table=11
/product="citryl-CoA lyase"
/protein_id="YP_004280827.1"
/db_xref="GI:325294313"
/db_xref="GeneID:10269318"
/translation="MEELFQLGEKVLADELKVEELKRYPENLQERKFFEKPFRRSALI
VSGDRVKHLRKVFGRDADIIIFNVEDGVSDKNKPFARLFLRKFLTNTSFDGSKEIVIR
VNPLDSQYFWEDITKLLPAIPHAIRLSKVETAEDIVVLEGILKAFELSKGLEEGTIKL
QLSIETGRAIENLGEILRASKRINAAYLGILDLFADLKLSQKLLKTSRFADYIREKFV
LTCRAHNVSSIAPAYQDYEDLEGFRKEVEREKELGFDGKSCISVKQVGIANEVFSPSL
EEIEEAKEIVKLYEEALREGKGGITYKGKFIDQPIYKDALNKLKYFSS"
misc_feature 99381..100211
/locus_tag="Dester_0110"
/note="Citrate lyase beta subunit [Carbohydrate transport
and metabolism]; Region: CitE; COG2301"
/db_xref="CDD:225184"
gene complement(100216..101118)
/locus_tag="Dester_0111"
/db_xref="GeneID:10269319"
CDS complement(100216..101118)
/locus_tag="Dester_0111"
/note="COGs: COG0583 transcriptional regulator;
InterPro IPR000847: IPR005119;
KEGG: tye:THEYE_A0898 transcriptional regulator;
PFAM: LysR, substrate-binding; HTH transcriptional
regulator, LysR;
SPTR: transcriptional regulator;
PFAM: Bacterial regulatory helix-turn-helix protein, lysR
family; LysR substrate binding domain"
/codon_start=1
/transl_table=11
/product="transcriptional regulator, LysR family"
/protein_id="YP_004280828.1"
/db_xref="GI:325294314"
/db_xref="GeneID:10269319"
/translation="MDLRQLEVFSKVFELKSFSKAAEKLRISQPTVSAHIQNLEDELG
IKLFDRMGRKILPTLEARILYRHAVELLKKKEEALSELLSVTKKSKGTLKLAVSNIPG
DYLIPHILLKLKHLMPEVVVQVEIFDSKKVIKQLKEVIPEYDIGFVGSLITDQKLEYK
KILDDEIVLIAPPYYNSEKMTLEDFKKLPLLIREEDSGTRIAVERALKEKGISSLSLN
ITAFLGSNTAIKEAVKKGVGFGLVSKYSIKEELDCNKLKTIKIEGLSIKRSFYAVRRN
DITPIPAARTLWDNLEKLFNSKNT"
misc_feature complement(100234..101118)
/locus_tag="Dester_0111"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature complement(100933..101112)
/locus_tag="Dester_0111"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature complement(100246..100845)
/locus_tag="Dester_0111"
/note="C-terminal substrate binding domain of LysR-type
transcriptional regulator CysL, which activates the
transcription of the cysJI operon encoding sulfite
reductase, contains the type 2 periplasmic binding fold;
Region: PBP2_CysL_like; cd08420"
/db_xref="CDD:176112"
misc_feature complement(order(100414..100419,100423..100428,
100444..100461,100741..100761,100765..100767,
100777..100779,100786..100791,100795..100800))
/locus_tag="Dester_0111"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176112"
gene complement(101126..101446)
/locus_tag="Dester_0112"
/db_xref="GeneID:10269320"
CDS complement(101126..101446)
/locus_tag="Dester_0112"
/note="KEGG: sse:Ssed_4019 SSS family solute/sodium (Na+)
symporter;
SPTR: Chromate transport protein ChrA"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280829.1"
/db_xref="GI:325294315"
/db_xref="GeneID:10269320"
/translation="MRSFNDDLARSLGIGNTIVGFMMMIMFILLPLGIFSEVLDLEHY
MGLKTVLSIIFAFITFLFYVNYAKSLKLSPIVQGFGAMISLLMGGILFFVTVDVILKI
LGLE"
gene complement(101492..102109)
/locus_tag="Dester_0113"
/db_xref="GeneID:10269321"
CDS complement(101492..102109)
/locus_tag="Dester_0113"
/note="InterPro IPR005500;
KEGG: rxy:Rxyl_2442 hypothetical protein;
PFAM: Protein of unknown function DUF309;
SPTR: uncharacterized protein;
PFAM: Domain of unknown function (DUF309)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280830.1"
/db_xref="GI:325294316"
/db_xref="GeneID:10269321"
/translation="MDIIEIRNWFAQNLCNYLRNKEKKSLEKLLTVIEVVENGSSKTK
KDIAESISLEFSLVVRKNEKLLLNQEELDSFTKEYLTKKVKAYKNFLNSLNGFEPVDS
DIERNVRMARKLFDAGLYFEVHELLEELWMVEFGKYREFLQALIQIGVAYYHITNYNT
RGFEHLIKNAKKLLEPYSGVLFSVNVDLLKEEELSNQTSDKVIKF"
misc_feature complement(101630..101779)
/locus_tag="Dester_0113"
/note="Domain of unknown function (DUF309); Region:
DUF309; pfam03745"
/db_xref="CDD:202755"
gene 102186..102725
/locus_tag="Dester_0114"
/db_xref="GeneID:10269322"
CDS 102186..102725
/locus_tag="Dester_0114"
/EC_number="3.1.3.15"
/note="COGs: COG0241 histidinol phosphatase and related
phosphatase;
InterPro IPR006543: IPR006549;
KEGG: tai:Taci_1706 hydrolase, HAD-superfamily, subfamily
IIIA;
PRIAM: histidinol-phosphatase;
SPTR: D,D-heptose 1,7-bisphosphate phosphatase;
TIGRFAM: histidinol-phosphate phosphatase; HAD-superfamily
hydrolase, subfamily IIIA;
PFAM: polynucleotide kinase 3 phosphatase;
TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA;
D,D-heptose 1,7-bisphosphate phosphatase;
histidinol-phosphate phosphatase family domain;
histidinol-phosphatase"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate phosphatase"
/protein_id="YP_004280831.1"
/db_xref="GI:325294317"
/db_xref="GeneID:10269322"
/translation="MKRKAILLDRDNTLIKDDGYIHEPEKVELLPGVPQGLKLLKEAG
FLLIVVSNQSGIGRGYFREDNFWAVNRKLQELLNPFGVQIDDFFFCPHKPSDNCNCRK
PKVGMVEKAVKNWNIDLSKSFVIGDKEIDVMLAFNAGCKGGIRVGIKPFENFLIAAKH
VISILEEDNETLQQNKERA"
misc_feature 102195..102614
/locus_tag="Dester_0114"
/note="histidinol-phosphate phosphatase family domain;
Region: Histidinol-ppas; TIGR01656"
/db_xref="CDD:233512"
misc_feature 102198..102611
/locus_tag="Dester_0114"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(102210..102218,102336..102341)
/locus_tag="Dester_0114"
/note="active site"
/db_xref="CDD:119389"
misc_feature 102210..102227
/locus_tag="Dester_0114"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 102336..102338
/locus_tag="Dester_0114"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 102691..103860
/locus_tag="Dester_0115"
/db_xref="GeneID:10269323"
CDS 102691..103860
/locus_tag="Dester_0115"
/note="COGs: COG0585 conserved hypothetical protein;
HAMAP: Pseudouridine synthase, TruD;
InterPro IPR001656;
KEGG: pmx:PERMA_0571 tRNA pseudouridine synthase D;
PFAM: Pseudouridine synthase, TruD;
SPTR: tRNA pseudouridine synthase D;
PFAM: tRNA pseudouridine synthase D (TruD);
TIGRFAM: tRNA pseudouridine synthase, TruD family"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase D"
/protein_id="YP_004280832.1"
/db_xref="GI:325294318"
/db_xref="GeneID:10269323"
/translation="MKLYNKIKREPKDFIVEEIPILEPKEEGKYYFVKLKKSNVSTLE
ALRVISRLLKIPLKEVGFAGLKDRYAITEQYLTVPITYQIERKCFKLINNRWKEVNSV
NFEKEMGFCLEVLGYVEKFLSLGDLKGNRFIITVKNFEKNMRERFYKNLEVVKSYGFP
NYFGEQRFGSVKSRDDFVLRYLLKGDFDGALRSYFFGKSSVDYWGDWRRLYKTLSPAL
EEYEKDLIRGLMRGLTAEKAFRILPKNVRLMFNFAFQSFLWNEYLREYIEAKYPFERV
PFINNWKLSYYTQVYDIDYLRKLEIPYTGHQFSPVDKTLKKIIKKVQQKYEIKKEWFD
KEVGGMRVMTDGLRKAVVFPEELKILEKTKRTIKLKFSLPPGSYATVLLRFLLKV"
misc_feature 102706..103854
/locus_tag="Dester_0115"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG0585"
/db_xref="CDD:223658"
misc_feature 102706..103518
/locus_tag="Dester_0115"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:241628"
misc_feature 102880..102891
/locus_tag="Dester_0115"
/note="active site"
/db_xref="CDD:211324"
misc_feature <103723..103851
/locus_tag="Dester_0115"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:241628"
gene complement(103850..104527)
/locus_tag="Dester_0116"
/db_xref="GeneID:10269324"
CDS complement(103850..104527)
/locus_tag="Dester_0116"
/note="COGs: COG3434 signal transduction protein
containing EAL and modified HD-GYP domains;
InterPro IPR013976;
KEGG: aae:aq_478 hypothetical protein;
PFAM: Metal-dependent hydrolase HDOD;
SPTR: uncharacterized protein;
PFAM: HDOD domain"
/codon_start=1
/transl_table=11
/product="signal transduction protein"
/protein_id="YP_004280833.1"
/db_xref="GI:325294319"
/db_xref="GeneID:10269324"
/translation="MADIERLELNDIERLELNREVMLRLIKALVDGEELEEIANIISM
DPNLSAKLLKLINSPYFGLRKEIKSIIQAIAYLGYNNLKDYVFVLLTSSLLKNKSKEE
IKKVLKFAYLLRALAEKILPEHADEAYMVGIFEPVKQEVGEETIKEILEKAGISEHVI
LGLSDSESELGKLKELAKQLIDLCGSIITGENIELPNSLSELDREELIQICLESENKA
HALVSTL"
misc_feature complement(103988..>104476)
/locus_tag="Dester_0116"
/note="Predicted signal transduction protein containing
EAL and modified HD-GYP domains [Signal transduction
mechanisms]; Region: COG3434"
/db_xref="CDD:225968"
gene complement(104538..105866)
/locus_tag="Dester_0117"
/db_xref="GeneID:10269325"
CDS complement(104538..105866)
/locus_tag="Dester_0117"
/note="COGs: COG0144 tRNA and rRNA cytosine-C5-methylase;
InterPro IPR006027: IPR001678: IPR004573: IPR011023;
KEGG: cce:Ccel_1532 sun protein;
PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p;
NusB/RsmB/TIM44;
SPTR: Sun protein;
TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; Nop2p;
PFAM: NOL1/NOP2/sun family; NusB family;
TIGRFAM: ribosomal RNA small subunit methyltransferase
RsmB; NOL1/NOP2/sun family RNA methylase"
/codon_start=1
/transl_table=11
/product="sun protein"
/protein_id="YP_004280834.1"
/db_xref="GI:325294320"
/db_xref="GeneID:10269325"
/translation="MTGWNERLIAIKILNRFEKDKKLKEHIEKFTSRLHPQDRAFIRE
IVSGTVRFLRLLDFSIEKATGKNLKRQKNTVRNSLRVIAYQIFFTNVPPYAALNETVE
AVKKILGKKAAGFVNAISKKIIGFDYKKEIERISDYFERLSILYSFETWMVKRWSNFY
GKEEIEKLLKGLNRVAPLFIRVNTIKISQQELLNLLEKTKIDAEPHPFIPYMIRIKGR
VPIESIPGYKEGFFYIQDPASFLSAYLLDPKQGEIILDVGAAPGGKTTALSSLTIDKA
RIIAVDINKERMKLLKNNLKRLGISNVELVLTDIQKDKNFIEKHENSFDKILIDAPCS
ATGVIRRHPEGKWNKSLKLIKYNQTIQRNLLSSCYKLLKPGGVLLYSVCSLEKEEGED
ILKFAQEIGFKESSLYNLPELLKSFAKKHFLRVFPHKNNMDGFFYSKFEK"
misc_feature complement(104541..105854)
/locus_tag="Dester_0117"
/note="16S rRNA methyltransferase B; Provisional; Region:
PRK14902"
/db_xref="CDD:237857"
misc_feature complement(105846..105854)
/locus_tag="Dester_0117"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238253"
misc_feature complement(105510..105848)
/locus_tag="Dester_0117"
/note="NusB family; Region: NusB; pfam01029"
/db_xref="CDD:216253"
misc_feature complement(104721..105107)
/locus_tag="Dester_0117"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(104877..104879,104937..104945,
105018..105023,105078..105098))
/locus_tag="Dester_0117"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(105850..106350)
/locus_tag="Dester_0118"
/db_xref="GeneID:10269326"
CDS complement(105850..106350)
/locus_tag="Dester_0118"
/EC_number="2.7.4.3"
/note="COGs: COG1936 nucleotide kinase (related to CMP and
AMP kinase);
InterPro IPR000623;
KEGG: mmx:MmarC6_1136 hypothetical protein;
PFAM: Shikimate kinase;
PRIAM: Adenylate kinase;
SPTR: adenylate kinase;
PFAM: ATPase family associated with various cellular
activities (AAA)"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_004280835.1"
/db_xref="GI:325294321"
/db_xref="GeneID:10269326"
/translation="MKITITGTPGTGKTTVANILSKKLNLPLFNISELVKKEKLYIEF
DSERNAFVVDPEKLREFFHNKKHFIAEGLVAHYIPSDILIILRVNPKKIPERLAERNY
TEEKVRENEEAEKFAVIATEAIEKSKAKRILHIDTTKRKPEDVVNLILEGIGGKEVFE
EVDWLE"
misc_feature complement(106051..106305)
/locus_tag="Dester_0118"
/note="AAA domain; Region: AAA_17; cl17253"
/db_xref="CDD:247807"
gene 106442..109657
/locus_tag="Dester_0119"
/db_xref="GeneID:10269327"
CDS 106442..109657
/locus_tag="Dester_0119"
/EC_number="6.3.4.16"
/note="COGs: COG0458 Carbamoylphosphate synthase large
subunit (split gene in MJ);
InterPro IPR005481: IPR005479: IPR005480: IPR011607: IPR
006275;
KEGG: fpl:Ferp_0317 carbamoyl-phosphate synthase, large
subunit;
PFAM: Carbamoyl phosphate synthetase, large subunit,
ATP-binding; Carbamoyl phosphate synthase, large subunit,
N-terminal; Carbamoyl phosphate synthetase, large subunit,
oligomerisation; MGS-like;
PRIAM: Carbamoyl-phosphate synthase (ammonia);
SPTR: Carbamoyl-phosphate synthase, large subunit;
TIGRFAM: Carbamoyl phosphate synthase, large subunit,
glutamine-dependent;
PFAM: Carbamoyl-phosphate synthase L chain, ATP binding
domain; MGS-like domain; Carbamoyl-phosphate synthetase
large chain, oligomerisation domain; Carbamoyl-phosphate
synthase L chain, N-terminal domain;
TIGRFAM: carbamoyl-phosphate synthase, large subunit"
/codon_start=1
/transl_table=11
/product="carbamoyl-phosphate synthase large subunit"
/protein_id="YP_004280836.1"
/db_xref="GI:325294322"
/db_xref="GeneID:10269327"
/translation="MPKRTDLKKILIIGSGPIVIGQAAEFDYSGTQACKALKEEGYQV
VLVNSNPATIMTDPDIADRTYIEPLTVEVLEKIIEKERPDALLPTVGGQTALNLAVEL
YEAGILEKYGVELIGAKIEAIKKAEDRELFKEAMLKIGLEVPKSGLARSLDEAMEVVK
EVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKRGLDASPINEILIEESVLGWKEYEL
EVMRDLNDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQVLRDAAIAIIREIG
VETGGSNVQFAVNPENGRVIVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE
LPNDITKKTPASFEPAIDYCVVKFPRWAFEKFPEANSTLTTRMKSVGEVMAIGRTFKE
ALLKAIRSLEIGRYGLLMKGVDKLSDQDLESKIAVPNADRIWYIAEALRRGWSLDKLY
ELSKIDKWFLHNIKQLVDLENEIKKYSLDTIPPILFKFAKKWGFSDKYIADLVGVSEK
EVREKRKQVAQVLYKTVDTCAGEFEAYTPYYYSTYDGRECEANPSDKKKVTVFGSGPN
RIGQGVEFDYCCVHAVWALRELGYEAHMANCNPETVSTDYDTSDKLFFEPLTLEDALN
IVEKEKPEGVIVQFGGQTPLKLSVPLEKEGVKILGTSSESIDIAEDRERFRTLLNKLG
LKQPPSGIARSLEEAEKIAEEIGFPVLMRPSYVLGGRAMRIVYDINELRTYMTEAVEV
SEDRPVLIDKFLEDAVEFDVDAVCDGKRVVIGGVMEHIEEAGIHSGDSACVLPTFSVP
KEIVEEIKEITRKIALELNVKGLINIQFAVKDGEIYIIEVNPRASRTVPFVSKATGIP
LAKVATKVAIGKTLDELGIEEVEPRYYSVKEAVFPFNRFPEVDPVLSPEMKSTGEVMG
IDDDLGIAFYKAQLAAGSRLPVDTSRGKVFISVKDKDKPKVYGIAKKLTDMGFKIVST
EGTYKFLKEKGLPVEVVFKIQEGRRPNVGDLIKNGEIILIINTPSGTRSTKDAVSIRR
LAVNYNIPYYTTIRGAQAAVMAIESMRKRQLEVKPLQEYYS"
misc_feature 106442..109651
/locus_tag="Dester_0119"
/note="carbamoyl phosphate synthase large subunit;
Reviewed; Region: carB; PRK05294"
/db_xref="CDD:235393"
misc_feature 106460..106807
/locus_tag="Dester_0119"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 106823..107446
/locus_tag="Dester_0119"
/note="Carbamoyl-phosphate synthase L chain, ATP binding
domain; Region: CPSase_L_D2; pfam02786"
/db_xref="CDD:190425"
misc_feature 107702..108070
/locus_tag="Dester_0119"
/note="Carbamoyl-phosphate synthetase large chain,
oligomerisation domain; Region: CPSase_L_D3; pfam02787"
/db_xref="CDD:217231"
misc_feature 108107..108433
/locus_tag="Dester_0119"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 108449..109060
/locus_tag="Dester_0119"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
/db_xref="CDD:247809"
misc_feature 109262..109594
/locus_tag="Dester_0119"
/note="Methylglyoxal synthase-like domain from type II
glutamine-dependent carbamoyl phosphate synthetase (CSP).
CSP, a CarA and CarB heterodimer, catalyzes the production
of carbamoyl phosphate which is subsequently employed in
the metabolic pathways...; Region: MGS_CPS_II; cd01424"
/db_xref="CDD:238712"
misc_feature order(109277..109279,109295..109297,109355..109357,
109361..109366,109412..109414,109481..109489)
/locus_tag="Dester_0119"
/note="IMP binding site; other site"
/db_xref="CDD:238712"
misc_feature order(109358..109360,109370..109372,109394..109396,
109400..109405,109409..109411,109448..109450)
/locus_tag="Dester_0119"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238712"
misc_feature order(109556..109558,109571..109573,109583..109585)
/locus_tag="Dester_0119"
/note="interdomain contacts; other site"
/db_xref="CDD:238712"
misc_feature 109556..109564
/locus_tag="Dester_0119"
/note="partial ornithine binding site; other site"
/db_xref="CDD:238712"
gene complement(109697..110176)
/locus_tag="Dester_0120"
/db_xref="GeneID:10269328"
CDS complement(109697..110176)
/locus_tag="Dester_0120"
/note="COGs: COG2870 ADP-heptose synthase bifunctional
sugar kinase/adenylyltransferase;
InterPro IPR004820: IPR011914: IPR004821;
KEGG: aae:aq_185 glycerol-3-phosphate cytidyltransferase;
PFAM: Cytidylyltransferase;
SPTR: Glycerol-3-phosphate cytidyltransferase;
TIGRFAM: RfaE bifunctional protein, domain II;
Cytidyltransferase-related;
PFAM: Cytidylyltransferase;
TIGRFAM: rfaE bifunctional protein, domain II;
cytidyltransferase-related domain"
/codon_start=1
/transl_table=11
/product="rfaE bifunctional protein"
/protein_id="YP_004280837.1"
/db_xref="GI:325294323"
/db_xref="GeneID:10269328"
/translation="MNRILKDLENLKTIVSNLKREKKKIVFTNGCFDILHAGHVDYLE
KAKSLGDVLIVGMNSDSSIKRIKGEKRPIVSQDYRAKVLIALKAVDYVFIFEDDTPYK
VIEIIKPHVLVKGTDWPIEKIVGKEFAERVERIPFEYDISTSKIIERVVKLYCSNKS"
misc_feature complement(109721..110140)
/locus_tag="Dester_0120"
/note="rfaE bifunctional protein, domain II; Region:
rfaE_dom_II; TIGR02199"
/db_xref="CDD:131254"
misc_feature complement(109730..110098)
/locus_tag="Dester_0120"
/note="Cytidylyltransferase; Region: CTP_transf_2;
pfam01467"
/db_xref="CDD:216517"
misc_feature complement(order(109742..109753,110060..110071))
/locus_tag="Dester_0120"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(109748..109750,110060..110062,
110069..110071))
/locus_tag="Dester_0120"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(110060..110071)
/locus_tag="Dester_0120"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(109742..109753)
/locus_tag="Dester_0120"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene 110231..111541
/locus_tag="Dester_0121"
/db_xref="GeneID:10269329"
CDS 110231..111541
/locus_tag="Dester_0121"
/EC_number="2.1.1.74"
/note="COGs: COG1206 NAD(FAD)-utilizing enzyme possibly
involved in translation;
HAMAP:methylenetetrahydrofolate--tRNA-(uracil-5-)-m
ethyltransferase,TrmFO;
InterPro IPR002218: IPR004417;
KEGG: aae:aq_691 tRNA (uracil-5-)-methyltransferase Gid;
PFAM: Glucose-inhibited division protein A-related;
PRIAM:methylenetetrahydrofolate--tRNA-(uracil-5-)-m
ethyltransferase(FADH(2)-oxidizing);
SPTR:methylenetetrahydrofolate--tRNA-(uracil-5-)-me
thyltransferasetrmFO;
TIGRFAM:methylenetetrahydrofolate--tRNA-(uracil-5-)
-methyltransferase,TrmFO;
PFAM: Glucose inhibited division protein A;
TIGRFAM: tRNA:m(5)U-54 methyltransferase"
/codon_start=1
/transl_table=11
/product="methylenetetrahydrofolate--tRNA-(uracil-5-)-
methyltransferase trmFO"
/protein_id="YP_004280838.1"
/db_xref="GI:325294324"
/db_xref="GeneID:10269329"
/translation="MKEIINVIGAGLAGVEAAYKVANKGHKVRLFEMRPKKTTPAHKT
SLFAELVCSNTLGGKEVTTPRGLLKAEMELLNSLIVEAARKTEVPAGGALAVDREKFA
EYITEKIENHPNIEVVREEVTEIPKEGITIVASGPLTSDKFSEYLRNYLGEKELHFYD
AISPIVYADTIDYSKCFWGSRYGKGGDDYLNCPMTEEEYERFYTALMEAEKVPLKDFE
KACYFEGCMPIEEMAERGKQTLLFGPLKPVGLIDPKTGKRPFAVVQLRKENKEGTLLN
LVGFQTKLKYPEQKRVFRLIPGLENAEFARFGSIHRNTFIKSPKLLLKTLQLKKNPKV
FFAGQITGVEGYPESAATGIIAGINAVKLAEGKELVYPPETTMIGALLKYITTADPKT
FQPMNANFGILLPPEKKIRGKRERRKYLAERALEDMKKWLELVY"
misc_feature 110231..111529
/locus_tag="Dester_0121"
/note="tRNA (uracil-5-)-methyltransferase Gid; Reviewed;
Region: PRK05335"
/db_xref="CDD:235416"
misc_feature 110243..111334
/locus_tag="Dester_0121"
/note="Glucose inhibited division protein A; Region: GIDA;
pfam01134"
/db_xref="CDD:216319"
gene 111520..112719
/locus_tag="Dester_0122"
/db_xref="GeneID:10269330"
CDS 111520..112719
/locus_tag="Dester_0122"
/note="InterPro IPR018392: IPR002482;
KEGG: hor:Hore_10980 peptidase M23B;
PFAM: peptidoglycan-binding lysin domain;
SMART: peptidoglycan-binding Lysin subgroup;
SPTR: peptidase M23B;
PFAM: LysM domain"
/codon_start=1
/transl_table=11
/product="peptidoglycan-binding lysin domain"
/protein_id="YP_004280839.1"
/db_xref="GI:325294325"
/db_xref="GeneID:10269330"
/translation="MVRISLLIFFLFTKLVFAQVYEIKIIKHIKEEKLSNQSVIIYKV
KRGDTLSGIISKLGLSPNILDKVIKLNKIKNPNLIYAGQKLKLPIGKKGKFLDKRRRK
IKESILPAVSMLGGKVEKKGSLFLKNGKVDFKKNPKISINGREYILDFDNGLNKEIKD
ELSSLGIKVITSQELKKLLEKLIESNFGVIEKNGKLILGIKDVLTYRYDYLSYDATTG
NRVIINLKRDTPTELVNLLKSYNIRVLQPEGKELEGKEGKLKILTGGGIEKISELLKI
VTGEKGVFKEDGIEFAKNHLFIAFDFLDPERKVKLELNGYKVVILTGNFLKDLENILS
SIPIVNKRINLMVVEPPGSNGERSKLEVPGLLISTEKGDWFVVDYVDKPEEIPYLRSK
GVNLIVY"
sig_peptide 111520..111573
/locus_tag="Dester_0122"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 111637..111780
/locus_tag="Dester_0122"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature <111796..112032
/locus_tag="Dester_0122"
/note="CoA enzyme activase uncharacterized domain
(DUF2229); Region: DUF2229; cl17855"
/db_xref="CDD:248409"
gene complement(112763..113977)
/locus_tag="Dester_0123"
/db_xref="GeneID:10269331"
CDS complement(112763..113977)
/locus_tag="Dester_0123"
/EC_number="2.7.2.3"
/note="COGs: COG0126 3-phosphoglycerate kinase;
HAMAP: phosphoglycerate kinase;
InterPro IPR001576;
KEGG: dtu:Dtur_1131 phosphoglycerate kinase;
PFAM: phosphoglycerate kinase;
PRIAM: phosphoglycerate kinase;
SPTR: phosphoglycerate kinase;
PFAM: phosphoglycerate kinase"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="YP_004280840.1"
/db_xref="GI:325294326"
/db_xref="GeneID:10269331"
/translation="MPFKKICNKMSLRDISPEKLKGKKVFVRVDFNVPLENGVIQNDK
RIRAALPTINYLIDHKAKVILCSHLDRPEGWDPKLSLKPVADRLSRLLEKEVKFIPDC
VGEEVEWEVNNLKEGEVALLENVRFYKEETKNDPEFAKKLAKLADIYVNDAFGTAHRK
HASTYGIAQYVEIAVAGFLLEKEIKYLQKALDNPERPLVLIIGGSKVSGKLEVIENLL
KVVDKMLIGGGMAYTFLKAAGYNVGKSLVEEELLDTAKEIMEKAEKNGIKFYLPVDSN
NADEFSPTAHAKLTTYKEIPDDMMGLDIGPATVELFKEALSDAKTILWNGPMGVFEFE
KFGYGTMEIGRIVASHAEALRIVGGGDSVAAVEALGLEHQIDHVSTGGGAFLEFLAGK
ELPGVMALTDKK"
misc_feature complement(112802..113947)
/locus_tag="Dester_0123"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:215761"
misc_feature complement(112772..113935)
/locus_tag="Dester_0123"
/note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
which catalyzes the transfer of the high-energy phosphate
group of 1,3-bisphosphoglycerate to ADP, forming ATP and
3-phosphoglycerate. This reaction represents the first of
the two substrate-level...; Region:
Phosphoglycerate_kinase; cd00318"
/db_xref="CDD:238195"
misc_feature complement(order(113600..113602,113774..113776,
113843..113845,113882..113884,113888..113890))
/locus_tag="Dester_0123"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238195"
misc_feature complement(order(112838..112846,113396..113407))
/locus_tag="Dester_0123"
/note="hinge regions; other site"
/db_xref="CDD:238195"
misc_feature complement(order(112892..112900,112982..112993,
112997..112999,113003..113005,113075..113077,
113291..113293))
/locus_tag="Dester_0123"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:238195"
misc_feature complement(112895..112897)
/locus_tag="Dester_0123"
/note="catalytic site [active]"
/db_xref="CDD:238195"
gene complement(113967..114608)
/locus_tag="Dester_0124"
/db_xref="GeneID:10269332"
CDS complement(113967..114608)
/locus_tag="Dester_0124"
/EC_number="2.7.7.18"
/note="COGs: COG1057 Nicotinic acid mononucleotide
adenylyltransferase;
HAMAP: Probable nicotinate-nucleotide adenylyltransferase;
InterPro IPR004820: IPR004821: IPR005248;
KEGG: tal:Thal_0519 nicotinate (nicotinamide) nucleotide
adenylyltransferase;
PFAM: Cytidylyltransferase;
PRIAM: Nicotinate-nucleotide adenylyltransferase;
SPTR: Probable nicotinate-nucleotide adenylyltransferase;
TIGRFAM: Probable nicotinate-nucleotide
adenylyltransferase; Cytidyltransferase-related;
PFAM: Cytidylyltransferase;
TIGRFAM: nicotinate (nicotinamide) nucleotide
adenylyltransferase; cytidyltransferase-related domain"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide adenylyltransferase"
/protein_id="YP_004280841.1"
/db_xref="GI:325294327"
/db_xref="GeneID:10269332"
/translation="MKALFGGSFNPVHIGHLIVARDILETFGFEEIIFVPAYLQPLKD
KLFLPPELRLELLRISIEEEKGFSIWDYEIRKKGISYTVDTLREFWKIYKEKPIFIIG
EDSFESFHLWKEPTEILKLAKIIVVKRPRYKIDVDKIAKKIGYSIKFSEVDKEKSVDS
NVLNDIDILIYNGRLVEISSTEIRNRLKSNKSIRYLLPDKAEKSLRRWWKNAF"
misc_feature complement(114009..114602)
/locus_tag="Dester_0124"
/note="Nicotinamide/nicotinate mononucleotide
adenylyltransferase; Region: NMNAT; cd02165"
/db_xref="CDD:185680"
misc_feature complement(114009..114602)
/locus_tag="Dester_0124"
/note="nicotinic acid mononucleotide adenylyltransferase;
Provisional; Region: nadD; PRK00071"
/db_xref="CDD:234611"
misc_feature complement(order(114075..114077,114222..114227,
114270..114275,114294..114299,114303..114308,
114312..114314,114363..114371,114489..114491,
114552..114554,114561..114566,114570..114572,
114582..114596))
/locus_tag="Dester_0124"
/note="active site"
/db_xref="CDD:185680"
misc_feature complement(114561..114572)
/locus_tag="Dester_0124"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:185680"
gene complement(114652..115557)
/locus_tag="Dester_0125"
/db_xref="GeneID:10269333"
CDS complement(114652..115557)
/locus_tag="Dester_0125"
/note="KEGG: saf:SULAZ_0945 hypothetical protein;
SPTR: membrane protein;
PFAM: Uncharacterised protein family (UPF0104);
TIGRFAM: conserved hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280842.1"
/db_xref="GI:325294328"
/db_xref="GeneID:10269333"
/translation="MKKNSLFFPTLILIIFAYFLYRFDVFFKLKEIIKNLDPIYLIFS
LFFYLLTYIFRAKRFSIIFPSISTQDLAAVMGIHTFFNNILPFRSGEASFPIILKKLF
GVDATISSVALLFIRILDLIVLSLFFLTSVLFVATKSKELLWIPVITISILILLLYLG
FKLLKKFRGRFLIIGTVFSFVQTFISFRAVGKILSYSFLTWLFKFVSFFFILKAGKIE
LNFFKTVFVSTFGEVTTILPIHSFGGFGTYEAGLVGGFSLIGVKVSYALTIAFYFHLL
LLLMSGILALVGWFYLSKKLKRKEY"
misc_feature complement(114736..>114996)
/locus_tag="Dester_0125"
/note="Uncharacterized protein family (UPF0104); Region:
UPF0104; pfam03706"
/db_xref="CDD:217681"
gene complement(115544..116509)
/locus_tag="Dester_0126"
/db_xref="GeneID:10269334"
CDS complement(115544..116509)
/locus_tag="Dester_0126"
/note="COGs: COG0463 Glycosyltransferase involved in cell
wall biogenesis;
InterPro IPR001173;
KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase;
PFAM: Glycosyl transferase, family 2;
SPTR: Dolichol-phosphate mannosyltransferase;
PFAM: Glycosyl transferase family 2"
/codon_start=1
/transl_table=11
/product="family 2 glycosyl transferase"
/protein_id="YP_004280843.1"
/db_xref="GI:325294329"
/db_xref="GeneID:10269334"
/translation="MDSIKKISIVIPVFNEEENIPILYDKLKKVLEKLPYDYEIIFVD
DGSTDRTEELLEKIASKDKKVKVIEFARNFGQTPAMMAGMDYATGDVIVTMDGDLQND
PEDIPRLLEKIEEGYDVVSGWRKHRQDAAISRKLPSKIANWLIGKITGVKIHDYGCTL
KAYKSNVIKKVRLYGELHRFIPALASTVTSVSKIIEIPVKHHPRIYGKSKYGISRTFK
VLADLFFIWFLKKFMQKPIHFFGIFGLFLFLVGLIPFLYLIGLKLTGHSIGGRPLLII
SVLFILSGIQMFTTGIISEILMRIYFEAQDKKPYVVGRAINVEEE"
misc_feature complement(115550..116506)
/locus_tag="Dester_0126"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature complement(115943..116485)
/locus_tag="Dester_0126"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature complement(order(116216..116218,116468..116470,
116474..116476))
/locus_tag="Dester_0126"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature complement(order(116216..116221,116375..116377))
/locus_tag="Dester_0126"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature complement(116216..116224)
/locus_tag="Dester_0126"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene complement(116502..118049)
/locus_tag="Dester_0127"
/db_xref="GeneID:10269335"
CDS complement(116502..118049)
/locus_tag="Dester_0127"
/note="COGs: COG1807 4-amino-4-deoxy-L-arabinose
transferase and related glycosyltransferase of PMT family;
InterPro IPR003342;
KEGG: pmx:PERMA_0510 dolichyl-phosphate-mannose-protein
mannosyltransferase;
PFAM: Glycosyl transferase, family 39;
SPTR: dolichyl-phosphate-mannose-protein
mannosyltransferase;
PFAM: Dolichyl-phosphate-mannose-protein
mannosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_004280844.1"
/db_xref="GI:325294330"
/db_xref="GeneID:10269335"
/translation="MQDRRFWLLALISTVLLLLPNGFYSAFDKDEPKYMEAAWEMVKT
GDYITPYYNYEYRFDKPILVYWLIALGYKIFGINEFGGRFFVSIFGVFTVLLLYWWLT
RWKGRDLAFWTSLVFLSLLDFIVMSSVAMPDVVLTFFFAASLIFFFEAYHRKSEKFYL
LAFASSGFATLTKGPVGLALPGLVAIIYLLLRRDLLKTLKEIPWFKGFGIYLLIVAPW
YVAIFKKHGYQFFKDFIIFHNIHRFTSKVPGHPTEWWYYLANYFWLYLPWSFFFPFAL
YRVFKRKESITDNVLNFSLVWFFTVVIFFQIAHTKLAHYLLPSFPAFAVITSWYLSKF
KDKIPAYITAAIFIVFSVIAFIFFKIKGWPLLSLVMLLPVLLATIFLKKDYLKPLTFG
FIGTMVLFKWITLPSLEFHRAKPAVGKEIQQLAKKCKECKFYFLDYTSPEIVYYFKEG
KLESIDSNRAKALLRSKEPVIIVTRENRLKKLKGESFYILDKKKELITKHSIVIISNY
PKEKIDG"
sig_peptide complement(117972..118049)
/locus_tag="Dester_0127"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(<117057..117989)
/locus_tag="Dester_0127"
/note="4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane]; Region: ArnT; COG1807"
/db_xref="CDD:224720"
misc_feature complement(<117036..117962)
/locus_tag="Dester_0127"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; cl17364"
/db_xref="CDD:247918"
gene 118130..118378
/locus_tag="Dester_0128"
/db_xref="GeneID:10269336"
CDS 118130..118378
/locus_tag="Dester_0128"
/note="KEGG: sat:SYN_03012 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280845.1"
/db_xref="GI:325294331"
/db_xref="GeneID:10269336"
/translation="MYKRLLKCSTCGNTGEFEYVGSRDVNKKGDVKDIIGNKEMWISY
FKCPECSSIEVEFHPVGEKPDIPEEFFREVAVEEGNDR"
gene 118356..119933
/locus_tag="Dester_0129"
/db_xref="GeneID:10269337"
CDS 118356..119933
/locus_tag="Dester_0129"
/note="COGs: COG1807 4-amino-4-deoxy-L-arabinose
transferase and related glycosyltransferase of PMT family;
InterPro IPR003342;
KEGG: aae:aq_1236 hypothetical protein;
PFAM: Glycosyl transferase, family 39;
SPTR: uncharacterized protein;
PFAM: Dolichyl-phosphate-mannose-protein
mannosyltransferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_004280846.1"
/db_xref="GI:325294332"
/db_xref="GeneID:10269337"
/translation="MKKEMIDRTFKLFLVFLSFALLINIGTFVLYHEEPRRGIITFEM
LKTHNFFQPTVLLEPYFRKPPFHNWILAISSEIFGSVSEFSLRLPSLISVILTSVFLF
FFSSKLFERKVALFSAVIFPTFFMVLFGYSTKAEPDTLFTFLVSSSIISWYYFIDKGK
ERIAWFLGYFFTSLAALTKGFPAFHFFLVAIFVYFFLKKDLKGLLSLNHIVGFVLGII
PFVGWILIVPTEQALKTLFSEVISRAPTQFDLLETIKRFISFPFRFLFATFPWSVIVL
FYLYREKEGYKKLISDKTTLFLILTFIGNFLIYWFFPGSRMRYTMPLLPLLSILIAVY
LKDKYFIHKRAKNILQFTLELIVPLGIVVGVIITGNSSLILKETIIFLIFAYLFYFYF
LPRINFTPIVILFALLMLLFRGFYSSYYLPIAESKYPPVREVAKEIADLTKEYPLFTK
TKYLQLCFYVEKFKNSVLPYSSKPPKDSLFLSERPEGNVLKEFSLGKHKFYLCSFSIE
RIEGKTLEAESRKTKLQ"
misc_feature 118356..>119360
/locus_tag="Dester_0129"
/note="4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane]; Region: ArnT; COG1807"
/db_xref="CDD:224720"
misc_feature 118368..>119366
/locus_tag="Dester_0129"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; cl17364"
/db_xref="CDD:247918"
gene complement(119855..120676)
/locus_tag="Dester_0130"
/db_xref="GeneID:10269338"
CDS complement(119855..120676)
/locus_tag="Dester_0130"
/note="COGs: COG0846 NAD-dependent protein deacetylase
SIR2 family;
HAMAP: NAD-dependent deacetylase;
InterPro IPR003000;
KEGG: pab:PAB0801 NAD-dependent deacetylase;
PFAM: NAD-dependent histone deacetylase, silent
information regulator Sir2;
SPTR: NAD-dependent deacetylase;
PFAM: Sir2 family"
/codon_start=1
/transl_table=11
/product="NAD-dependent deacetylase"
/protein_id="YP_004280847.1"
/db_xref="GI:325294333"
/db_xref="GeneID:10269338"
/translation="MKDIEKLSEILKSFQSVAVLTGAGVSAESGIPTFRGKDGLWNKY
DPTELATFEAFEEDPLRVWKWHLWRMRLIANAKPNHAHYAISEMERLFPDFLLITQNV
DSLHKIAGSKKLVELHGNIFEGKCRYCGKRYNEKELFNLFPLADRKFLKGLREEDFRK
RILEGLEAKDLPKCSICGNFVGPGVVWFGENLPEDALQKAFQAAEKSKIFFSIGTSAL
VQPAASLPLIAKKKGAVLVEINIDKTLISSYCNFVFRDSASKVLPSILSILKEHK"
misc_feature complement(119864..120673)
/locus_tag="Dester_0130"
/note="NAD-dependent deacetylase; Provisional; Region:
PRK00481"
/db_xref="CDD:234777"
misc_feature complement(119879..120628)
/locus_tag="Dester_0130"
/note="SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB;
and are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which...; Region:
SIRT5_Af1_CobB; cd01412"
/db_xref="CDD:238703"
misc_feature complement(order(119906..119908,119951..119956,
120020..120022,120035..120037,120323..120325,
120368..120370,120374..120379,120431..120433,
120572..120577,120596..120601,120605..120607))
/locus_tag="Dester_0130"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:238703"
misc_feature complement(order(120017..120025,120101..120115,
120119..120121,120323..120325,120371..120373))
/locus_tag="Dester_0130"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238703"
misc_feature complement(order(120146..120148,120155..120157,
120290..120292,120299..120301))
/locus_tag="Dester_0130"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:238703"
gene complement(120691..120777)
/locus_tag="Dester_R0001"
/db_xref="GeneID:10269339"
tRNA complement(120691..120777)
/locus_tag="Dester_R0001"
/product="tRNA-Leu"
/db_xref="GeneID:10269339"
gene 120888..121601
/locus_tag="Dester_0131"
/db_xref="GeneID:10269340"
CDS 120888..121601
/locus_tag="Dester_0131"
/note="COGs: COG1237 Metal-dependent hydrolase of the
beta-lactamase superfamily II;
KEGG: dat:HRM2_43600 metal-dependent hydrolase;
SPTR: Metal-dependent hydrolase;
PFAM: Metallo-beta-lactamase superfamily"
/codon_start=1
/transl_table=11
/product="metal-dependent hydrolase"
/protein_id="YP_004280848.1"
/db_xref="GI:325294334"
/db_xref="GeneID:10269340"
/translation="MENLKILYDNRALPDYREDWGFAALIELSDETILFDTGAKPEVL
AENLEKFGVNIEEVDVVFISHNHWDHVGGLPYILKKNRDFELFVPEPDCVEFEENLPE
SVVCVPITTPTYISERAVSTGIMETGIEKPSFEHSLIVSTAEGFVLLTGCSHPGIVEI
AKKAVTICGEELFLIVGGFHLYRSPDEKIIEVAEELKKFTRFVAPCHCTGERGIELFK
EILKDRFVEAAAGVEIPLE"
misc_feature 120897..121589
/locus_tag="Dester_0131"
/note="Metal-dependent hydrolases of the beta-lactamase
superfamily II [General function prediction only]; Region:
COG1237"
/db_xref="CDD:224158"
gene 121612..122958
/locus_tag="Dester_0132"
/db_xref="GeneID:10269341"
CDS 121612..122958
/locus_tag="Dester_0132"
/note="COGs: COG0541 Signal recognition particle GTPase;
InterPro IPR013822: IPR000897: IPR004125: IPR004780: IPR
003593;
KEGG: tjr:TherJR_2051 signal recognition particle protein;
PFAM: Signal recognition particle, SRP54 subunit, GTPase;
Signal recognition particle, SRP54 subunit, helical
bundle; Signal recognition particle, SRP54 subunit,
M-domain;
SMART: ATPase, AAA+ type, core;
SPTR: Signal recognition particle protein;
TIGRFAM: Signal recognition particle, SRP;
PFAM: SRP54-type protein, GTPase domain; SRP54-type
protein, helical bundle domain; Signal peptide binding
domain;
TIGRFAM: signal recognition particle protein"
/codon_start=1
/transl_table=11
/product="signal recognition particle protein"
/protein_id="YP_004280849.1"
/db_xref="GI:325294335"
/db_xref="GeneID:10269341"
/translation="MFDALAEKVQSAIEKIGRKGRIDEETLEKGLREIKLALLEADVN
YRVVSNFIKDIKEKALGAKVIKGVNPAQQLVKIVHDELVQTLGGEAEKLNLKGKPSVI
LLIGLQGSGKTTTAAKLANYLKKQGKRVLLTSVDVYRPAAMLQLKKLGDQIGIPVFLE
EKEKDAVKIAKDALLKAKDESYDVLVVDTAGRLHIDEELLEEARKIKEEVVPDETLFV
IDSMTGQESVNIAKAFDERVGMTGIVLTKMDSDARGGVALSVKGVTGKPIKFAGVGEK
IDDFEPFYPDRVASRILGMGDIVSLVEKAQEVIDEKEALSMQEKLLSGEFTLEDFRQQ
LRMIQRLGPLQQIIRMIPGLSSQKMLKQLEKAIDDKKLKRIEAIINSMTPEERRNHAI
INASRKRRIAKGSGTSVKEVDALIKQFVQAKMAMKQMKKMQRKMAKKGGRFPFPFM"
misc_feature 121612..122868
/locus_tag="Dester_0132"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:236780"
misc_feature 121636..121869
/locus_tag="Dester_0132"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:214941"
misc_feature 121909..122427
/locus_tag="Dester_0132"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:239389"
misc_feature 121927..121950
/locus_tag="Dester_0132"
/note="P loop; other site"
/db_xref="CDD:239389"
misc_feature order(122017..122019,122182..122184,122347..122349,
122356..122361)
/locus_tag="Dester_0132"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:239389"
misc_feature 122584..122868
/locus_tag="Dester_0132"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene 123029..124284
/locus_tag="Dester_0133"
/db_xref="GeneID:10269342"
CDS join(123029..123400,123400..124284)
/locus_tag="Dester_0133"
/ribosomal_slippage
/note="KEGG: saf:SULAZ_1706 transposase;
SPTR: transposase;
manually curated;
PFAM: Integrase core domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280850.1"
/db_xref="GI:325294336"
/db_xref="GeneID:10269342"
/translation="MKQLKRFKGTSLHISSTNTAFKETLKEGRRVKKKLDLTKDRNVK
RRLKWIEYYHKTGNARKTCRYFGISPTTFYKWKKRYDKYGIEGLQDRNKRPHKVRQPQ
TEPEIEHIIVTIREKFPTWSKEKDSSLHGKIPKCKNIILYSLQGLKRHGLIERTEKLK
STYKRKKQKGKKNRTRKGLRADKPGTILMDVKYLYWCGKTFYQFTAIDKFTRIAFAKV
YSTKSSRSGRRFFEELEKFLPFKIEKVQTDNGSEFLGELDEYLKRKGIEHYFSYPKSP
KTNAHVERFIQTTESELWMIEGTEPTVDEMNKKLFEYLKIYNFLRPHHSLNYKTPAEK
FEDYIRSHQGVHHVLNSNKLVDNPDAVYVVETEGERTIIIELKVDPKDLGKVIGRQGR
TAKALRTLLSAAATKIGKRAVLEIIE"
misc_feature 123161..123316
/locus_tag="Dester_0133"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature join(123164..123400,123400..123480)
/locus_tag="Dester_0133"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
misc_feature 123242..>123394
/locus_tag="Dester_0133"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature 123577..123906
/locus_tag="Dester_0133"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 123817..124020
/locus_tag="Dester_0133"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
misc_feature 124084..124281
/locus_tag="Dester_0133"
/note="Predicted RNA-binding protein (contains KH domain)
[General function prediction only]; Region: COG1837"
/db_xref="CDD:224750"
misc_feature 124087..124278
/locus_tag="Dester_0133"
/note="hypothetical protein; Provisional; Region:
PRK00468"
/db_xref="CDD:179040"
misc_feature 124189..124200
/locus_tag="Dester_0133"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239092"
gene complement(124316..124978)
/locus_tag="Dester_0134"
/db_xref="GeneID:10269343"
CDS complement(124316..124978)
/locus_tag="Dester_0134"
/EC_number="2.2.1.2"
/note="COGs: COG0176 transaldolase;
HAMAP: transaldolase;
InterPro IPR001585: IPR004731;
KEGG: aae:aq_119 translaldolase;
PFAM: transaldolase;
SPTR: Probable transaldolase;
TIGRFAM: transaldolase C;
PFAM: transaldolase;
TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family"
/codon_start=1
/transl_table=11
/product="transaldolase"
/protein_id="YP_004280851.1"
/db_xref="GI:325294337"
/db_xref="GeneID:10269343"
/translation="MKFFIDTADINEIKAAMEMGMVDGVTTNPTLISKTGRPFLEVAK
EIVETVPGPVSLEVVSLDAQGMINEARQLAKFGDNVVIKIPMTTEGLKAVKTLSKEGI
KTNVTLVFSPLQALLAAKAGATYVSPFVGRLDDIGHDGMELISQIVQIYDNYGFNTEI
IVASIRHPQHVLQAALLGADIATIPFKVIKQLAKHPLTDIGLERFLEDWAKVPGKDSI
FE"
misc_feature complement(124346..124975)
/locus_tag="Dester_0134"
/note="Transaldolase-like fructose-6-phosphate aldolases
(FSA) found in bacteria and archaea; Region:
Transaldolase_FSA; cd00956"
/db_xref="CDD:188643"
misc_feature complement(order(124490..124492,124592..124594,
124730..124732,124895..124900,124961..124963))
/locus_tag="Dester_0134"
/note="active site"
/db_xref="CDD:188643"
misc_feature complement(order(124352..124357,124361..124366,
124376..124378,124385..124390,124394..124396,
124442..124444,124451..124456,124472..124474,
124478..124480,124517..124522,124571..124573,
124577..124579,124586..124588,124592..124594,
124637..124639,124694..124696,124703..124708,
124712..124714,124772..124774,124790..124792,
124808..124810,124862..124864,124871..124873,
124880..124882,124889..124894,124919..124921,
124928..124930))
/locus_tag="Dester_0134"
/note="intersubunit interactions; other site"
/db_xref="CDD:188643"
misc_feature complement(124730..124732)
/locus_tag="Dester_0134"
/note="catalytic residue [active]"
/db_xref="CDD:188643"
gene complement(124975..125484)
/locus_tag="Dester_0135"
/db_xref="GeneID:10269344"
CDS complement(124975..125484)
/locus_tag="Dester_0135"
/note="InterPro IPR007404;
KEGG: dds:Ddes_1832 membrane-bound metal-dependent
hydrolase;
PFAM: Protein of unknown function DUF457, transmembrane;
SPTR: uncharacterized protein;
PFAM: Predicted membrane-bound metal-dependent hydrolase
(DUF457)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280852.1"
/db_xref="GI:325294338"
/db_xref="GeneID:10269344"
/translation="MTAGTHILGGILLAAFFQLPIIPAAFGSVLPDIDLKKGLPFRQN
RTLFNSHRGITHHIAIPIVLVFLSLYLRDHYSYEIGRYFLSFSIGYASHILLDILNPL
GVPFSFKYYPRLSLKLVRSGKFGEIFVILTLVVMLIYFVDSGKLSYAGFIDKDILEVL
KKLIEEVRG"
sig_peptide complement(125404..125484)
/locus_tag="Dester_0135"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(125062..125472)
/locus_tag="Dester_0135"
/note="Predicted membrane-bound metal-dependent hydrolase
(DUF457); Region: DUF457; pfam04307"
/db_xref="CDD:218019"
gene complement(125481..126128)
/locus_tag="Dester_0136"
/db_xref="GeneID:10269345"
CDS complement(125481..126128)
/locus_tag="Dester_0136"
/note="COGs: COG0491 Zn-dependent hydrolase including
glyoxylase;
KEGG: sul:SYO3AOP1_1739 beta-lactamase domain protein;
SPTR: metallo-beta-lactamase;
PFAM: Metallo-beta-lactamase superfamily"
/codon_start=1
/transl_table=11
/product="beta-lactamase"
/protein_id="YP_004280853.1"
/db_xref="GI:325294339"
/db_xref="GeneID:10269345"
/translation="MEILAIPAGPFLVNTLLVWDKESKCAAIVDPGDKKSIEEIEDIL
SRKDLNVKYIINTHEHPDHIAANAWAKLKFPKADLIMHEEAAKHLNFWVESEIGELAG
AEYSPSPEKTLKDEDELKLGNFNFKIIHSPGHSPGSIVLFSPKADVAIVGDLIFKGSI
GRYDLPMSNRHELKRSVVKVLNQLNPDTLIIPGHGPRTTVKEEINNNPFIREFIG"
misc_feature complement(125490..126128)
/locus_tag="Dester_0136"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:223565"
misc_feature complement(<125541..126089)
/locus_tag="Dester_0136"
/note="Uncharacterized flavoproteins [Energy production
and conversion]; Region: FpaA; COG0426"
/db_xref="CDD:223503"
gene complement(126088..126675)
/locus_tag="Dester_0137"
/db_xref="GeneID:10269346"
CDS complement(126088..126675)
/locus_tag="Dester_0137"
/note="COGs: COG1432 conserved hypothetical protein;
KEGG: pmx:PERMA_0982 RtsE;
SPTR: RtsE;
PFAM: Protein of unknown function DUF88;
TIGRFAM: conserved hypothetical protein TIGR00288"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280854.1"
/db_xref="GI:325294340"
/db_xref="GeneID:10269346"
/translation="MKAQELIDRDKITSHLRVAVFVDMQNIYYGAKNTLKKKVDFKRL
LELGVRGRTLYRAIAYLVDLDKVNQDSFIYVLRSLGYEVKLKEPKKFYSWDKIEYKAD
WDMGIAIDAIAMAENGKIDVVVLMSGDGDFVDLINFLKAKGIKVEVISFRSITAKELI
HAANEYIDLGEIGDYIVLEEKENGDISNSSRSFFG"
misc_feature complement(126166..126630)
/locus_tag="Dester_0137"
/note="LabA_like proteins; Region: LabA; cd10911"
/db_xref="CDD:199897"
misc_feature complement(126130..126627)
/locus_tag="Dester_0137"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1432"
/db_xref="CDD:224349"
misc_feature complement(order(126283..126285,126289..126291,
126295..126297,126364..126366,126598..126600,
126607..126609))
/locus_tag="Dester_0137"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:199897"
gene complement(126650..127918)
/locus_tag="Dester_0138"
/db_xref="GeneID:10269347"
CDS complement(126650..127918)
/locus_tag="Dester_0138"
/note="COGs: COG0053 Co/Zn/Cd cation transporter;
InterPro IPR002524;
KEGG: nam:NAMH_0349 hypothetical protein;
PFAM: Cation efflux protein;
SPTR: uncharacterized protein;
TIGRFAM: Cation efflux protein;
PFAM: Cation efflux family; Dinitrogenase iron-molybdenum
cofactor;
TIGRFAM: cation diffusion facilitator family transporter"
/codon_start=1
/transl_table=11
/product="cation diffusion facilitator family transporter"
/protein_id="YP_004280855.1"
/db_xref="GI:325294341"
/db_xref="GeneID:10269347"
/translation="MVEEKKKIALYSVFLNLFLSLLKIIAGIISGSAALVADGVHSVA
DFAAALSVYAGIVIANKKVNGFPYGLYKVENVISLVSAFAIFFAGYEIARDVLFSQSK
MEIENLPVAIGAIITTITLTYLFSKYERKKGEELNSPSLIADSEHIKTDMLSSIIVLT
GILGNYFGYPIIEKIAVLIVVLFIFHSGFEIMLESLKVILDASIDRETLEKIKKIMLS
YPLISRVKSVTGRSSGSYKFIEAEVCVSTDSLEKAHSLIHEIEERIKRDIPFIEKIII
HFEPEEKKKLIYAIPIEENEERVCGRFGECPKILLLEKEKNELKKLAIFRNPASNMQF
GKCIELVEFLISKGVNCIAVNSLPLGKGVIFALSNYGVGMKLIPEEDLSVFIEKLKQE
PTCEPPLAIWNRFVCDISNGGSSEGTRANR"
misc_feature complement(127064..127909)
/locus_tag="Dester_0138"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:223131"
misc_feature complement(127076..127807)
/locus_tag="Dester_0138"
/note="cation diffusion facilitator family transporter;
Region: CDF; TIGR01297"
/db_xref="CDD:233348"
misc_feature complement(126749..127060)
/locus_tag="Dester_0138"
/note="This CD represents a family of iron-molybdenum
cluster-binding proteins that includes NifB, NifX, and
NifY, all of which are involved in the synthesis of an
iron-molybdenum cofactor (FeMo-co) that binds the active
site of the dinitrogenase enzyme. This...; Region:
NifX_NifB; cl00252"
/db_xref="CDD:241727"
gene 128128..129480
/locus_tag="Dester_0139"
/db_xref="GeneID:10269348"
CDS 128128..129480
/locus_tag="Dester_0139"
/EC_number="1.12.7.2"
/note="COGs: COG4624 Iron only hydrogenase large subunit
C-terminal domain;
InterPro IPR004108: IPR013352;
KEGG: tye:THEYE_A1726 hydrogenase;
PFAM: Iron hydrogenase, large subunit, C-terminal;
PRIAM: Ferredoxin hydrogenase;
SPTR: Hydrogenase;
TIGRFAM: Iron hydrogenase, subset;
PFAM: Iron only hydrogenase large subunit, C-terminal
domain;
TIGRFAM: hydrogenases, Fe-only"
/codon_start=1
/transl_table=11
/product="hydrogenase, Fe-only"
/protein_id="YP_004280856.1"
/db_xref="GI:325294342"
/db_xref="GeneID:10269348"
/translation="MDNKVSRVATFPPPPDARVKGHSPLGTYRPGELKGIVRINQDKC
VGCDTCKGHCPADAIKGGLGVAHSVDIMRCINCGQCLVNCPFGAIEQMSFVDEVAKKL
SDPEVTVVALIAPAVRVAIAEEFGAPPGTLTVGRLHNALKKLGFKIYETNLAADQTIM
EEGFEFIAKVRYWLLGERDEELKEIAHHPLPHFTSCCPGWIRYAEIYYPQLLPHISGA
KSPQQMAGASAKTWAALNIWNVDPRKVYTVGIMPCTAKIFEASRPEFKSAWEFLKEKG
SIPEDTPPFPDVDAVLTTRDLATLFKMKGINPLELPEKEKEEEPGEIYTGAATIFGNS
GGVMEAALRTTYYVLSGKKPPNWNIYGVRGHTTGLKEMEIPIPLKSGETIRIRVAVVN
GIKNHLDKIVEDVIKGTSPYHFIEVMNCPGGCINGGGQPINPMGTSWIDPLLPLRLKA
"
misc_feature 128236..129423
/locus_tag="Dester_0139"
/note="[FeFe] hydrogenase, group A; Region: FeFe_hydrog_A;
TIGR02512"
/db_xref="CDD:233903"
misc_feature 128236..128307
/locus_tag="Dester_0139"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:215671"
misc_feature 128329..128394
/locus_tag="Dester_0139"
/note="4Fe-4S binding domain; Region: Fer4_6; pfam12837"
/db_xref="CDD:205098"
misc_feature 128449..129420
/locus_tag="Dester_0139"
/note="Iron only hydrogenase large subunit, C-terminal
domain; Region: Fe_hyd_lg_C; pfam02906"
/db_xref="CDD:217280"
gene 129506..129871
/locus_tag="Dester_0140"
/db_xref="GeneID:10269349"
CDS 129506..129871
/locus_tag="Dester_0140"
/note="InterPro IPR003149: IPR006311;
KEGG: she:Shewmr4_3251 iron hydrogenase, small subunit;
PFAM: Iron hydrogenase, small subunit-like;
SPTR: periplasmic [Fe] hydrogenase, small subunit;
PFAM: Iron hydrogenase small subunit;
TIGRFAM: Tat (twin-arginine translocation) pathway signal
sequence"
/codon_start=1
/transl_table=11
/product="iron hydrogenase small subunit"
/protein_id="YP_004280857.1"
/db_xref="GI:325294343"
/db_xref="GeneID:10269349"
/translation="MKEERTLPYQYEEKPASTLISRRTFLKVTGAIVSVIAISGYAIT
DLLKKRNKYIKMRQAGLYKDDQRLQKKGLAASYENPVVQKFYKEFAGHPLSEVSEHLL
HTKYVVRSNLKIGGGEHGC"
misc_feature 129647..129835
/locus_tag="Dester_0140"
/note="Iron hydrogenase small subunit; Region: Fe_hyd_SSU;
pfam02256"
/db_xref="CDD:190260"
gene 129861..130538
/locus_tag="Dester_0141"
/db_xref="GeneID:10269350"
CDS 129861..130538
/locus_tag="Dester_0141"
/note="COGs: COG2864 Cytochrome b subunit of formate
dehydrogenase;
KEGG: shl:Shal_1410 formate dehydrogenase,
SPTR: formate dehydrogenase;
PFAM: Cytochrome b(N-terminal)/b6/petB;
TIGRFAM: formate dehydrogenase, gamma subunit"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase"
/protein_id="YP_004280858.1"
/db_xref="GI:325294344"
/db_xref="GeneID:10269350"
/translation="MAAKEERVLRFPASEKVFHNINAITWYILAITGILAFFKLVPKS
TAETLMQIHIWVGVIFTVNFIAFVLIAPDRFYIMLKNLLEWDKDSFAWFKNLGGYPRK
FGIPFGAKETAPQGKYNAGQKIAYLLFIFMIFGLIVTGWVLYFLKHALGKELFLLMFY
FHVWGSIITTLLVTFVHLPLSLINIEDFKAMWRFGSGYMPFEAAEHHSPKWVERDLVQ
IEPMKKQ"
misc_feature 129864..130493
/locus_tag="Dester_0141"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:242146"
misc_feature 129879..130499
/locus_tag="Dester_0141"
/note="formate dehydrogenase, gamma subunit; Region:
formate-DH-gamm; TIGR01583"
/db_xref="CDD:130645"
gene 130627..132030
/locus_tag="Dester_0142"
/db_xref="GeneID:10269351"
CDS 130627..132030
/locus_tag="Dester_0142"
/EC_number="4.2.1.2"
/EC_number="4.3.1.1"
/note="COGs: COG1027 Aspartate ammonia-lyase;
InterPro IPR000362: IPR018951;
KEGG: pth:PTH_0981 aspartate ammonia-lyase;
PFAM: Fumarate lyase; Fumarase C, C-terminal;
PRIAM: Fumarate hydratase;
SPTR: Aspartate ammonia-lyase;
PFAM: Lyase"
/codon_start=1
/transl_table=11
/product="Fumarate hydratase"
/protein_id="YP_004280859.1"
/db_xref="GI:325294345"
/db_xref="GeneID:10269351"
/translation="MFREEKDFLGSLKIPADSYYGIHTARALKNFPLSGYKVPKELIT
AYALVKKACAIANTRLGYIEEKIGNAIIKACDEILEGKFQEEFIVDALQGGAGTSTNM
NINEVIANRANEILGYKKGQYYPVHPLEHVNLHQSTNDTYPTALKIAALFMLEDLSEA
IARLQGVLQEKEKEFAFILKIGRTELQEAVPLTLGREFSGFAEAISRDRWRVWKCKER
IRVLNIGGTAIGTGLTAPRDYVFFVIEVLRELTGLNISRAENPVGVTAFADDMVEVVG
ILDAYASNLFKISNDLRLMNLLKEVRLKPVQPGSSIMPGKVNPVVLEATMQVALKVKA
NSYIVRECASSSTFQIVEFMPLIAFSFLESLRLLLNVTTVLKEHLTKLKADKEFCKKY
FEESFSIITALLPLIGYEKAVEIVQEMKTKEVKNIKEFLQQKFGNKILKLLSPESLNS
LGYDEYELEELRNDNNS"
misc_feature 130627..131985
/locus_tag="Dester_0142"
/note="aspartate ammonia-lyase; Provisional; Region: aspA;
PRK12273"
/db_xref="CDD:237031"
misc_feature 130633..131979
/locus_tag="Dester_0142"
/note="Aspartase; Region: Aspartase; cd01357"
/db_xref="CDD:176462"
misc_feature order(130909..130920,131035..131043,131176..131181,
131572..131574,131578..131580,131593..131595)
/locus_tag="Dester_0142"
/note="active sites [active]"
/db_xref="CDD:176462"
misc_feature order(131173..131184,131194..131196,131212..131217,
131233..131235,131245..131247,131257..131259,
131311..131313,131401..131406,131413..131415,
131422..131427,131431..131433,131440..131445,
131452..131454,131461..131466,131473..131478,
131482..131487,131494..131499,131632..131634,
131656..131658,131665..131673,131827..131829)
/locus_tag="Dester_0142"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176462"
gene 132014..133306
/locus_tag="Dester_0143"
/db_xref="GeneID:10269352"
CDS 132014..133306
/locus_tag="Dester_0143"
/note="COGs: COG1160 GTPase;
InterPro IPR002917: IPR005225;
KEGG: sat:SYN_01372 GTPase;
PFAM: GTP-binding protein, HSR1-related;
SPTR: GTPase;
TIGRFAM: Small GTP-binding protein;
PFAM: GTPase of unknown function;
TIGRFAM: small GTP-binding protein domain"
/codon_start=1
/transl_table=11
/product="small GTP-binding protein"
/protein_id="YP_004280860.1"
/db_xref="GI:325294346"
/db_xref="GeneID:10269352"
/translation="MITTPKGLRLHIGVFGRTNVGKSSFINLVTGQEVSIVSDIPGTT
TDVVEKAMEILPIGPVLFLDTAGIDDETLLGKERVRKAFEVLRRCDVALLMLEPNVFT
EFESSLIKLFEEKKIPYVVVINKIDVQKPEKEFLKNFEEKKIPVIEICALKNKREDIL
AKLKTALLKVVPEEFLREPQLIGDLVPPGGIAVLVVPIDLEAPKGRLILPQVQTIRNV
LDSDATAIVVKERELPYLLSVLNRKSDVIVCDSQVVLKVAGDVPQGVKFTTFSILFSR
YKGDIVEFAKGLHALKNLKEGAKVLIAEACTHHPIEDDIGRVKIPRWIRQYTGLKDIS
FSFHSGRSYPEDLSEYDLVVHCGACTLNRREMLSRIELAKSKNVPITNYGMCISLVQG
VIEKVLEPFPAALLAFRNQFGRKKYDYRNRRSCKILDA"
misc_feature 132023..133207
/locus_tag="Dester_0143"
/note="[FeFe] hydrogenase H-cluster maturation GTPase
HydF; Region: GTP_HydF; TIGR03918"
/db_xref="CDD:234395"
misc_feature 132050..>132397
/locus_tag="Dester_0143"
/note="E. coli Ras-like protein (Era)-like GTPase; Region:
Era_like; cd00880"
/db_xref="CDD:206646"
misc_feature 132059..132082
/locus_tag="Dester_0143"
/note="G1 box; other site"
/db_xref="CDD:206646"
misc_feature order(132068..132085,132383..132388,132392..132394)
/locus_tag="Dester_0143"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206646"
misc_feature 132140..132154
/locus_tag="Dester_0143"
/note="Switch I region; other site"
/db_xref="CDD:206646"
misc_feature 132143..132145
/locus_tag="Dester_0143"
/note="G2 box; other site"
/db_xref="CDD:206646"
misc_feature order(132200..132217,132275..132277)
/locus_tag="Dester_0143"
/note="Switch II region; other site"
/db_xref="CDD:206646"
misc_feature 132203..132214
/locus_tag="Dester_0143"
/note="G3 box; other site"
/db_xref="CDD:206646"
misc_feature 132383..132394
/locus_tag="Dester_0143"
/note="G4 box; other site"
/db_xref="CDD:206646"
gene 133263..134732
/locus_tag="Dester_0144"
/db_xref="GeneID:10269353"
CDS 133263..134732
/locus_tag="Dester_0144"
/note="COGs: COG1060 Thiamine biosynthesis protein ThiH;
InterPro IPR007197: IPR010722: IPR006638;
KEGG: swo:Swol_1022 thiamine biosynthesis protein ThiH;
PFAM: Biotin/thiamin synthesis-associated protein; Radical
SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes;
PFAM: Radical SAM superfamily; Biotin and Thiamin
Synthesis associated domain;
TIGRFAM: thiazole biosynthesis protein ThiH"
/codon_start=1
/transl_table=11
/product="biotin and thiamin synthesis associated protein"
/protein_id="YP_004280861.1"
/db_xref="GI:325294347"
/db_xref="GeneID:10269353"
/translation="MITVTEEAVKSWMHNVIKREQYEKFMEGGKDFINDEEIWEKLKE
NSKPEPSKVRDIIAKALSLERLEPDETATLLNVEDKELWQEIFEAAGKIKEKVYGKRI
VTFAPLYVSNYCVNDCEYCGYRISNKHIKRKQLTEEELKAEVEALVKQGHKRLIMVYG
EHPSSDARFIAKTLEITYGIKIEGGEIRRVNVNAAPMSIEDLELLRDIGIGTYQVFQE
TYHHETYKRLHKGIKADYHWRLYSLHRAMEAGVDDVAIGALFGLYDWRFEVMGLLYHA
IDLEKRFGGVGPHTISFPRLEPAVGTPFYEKNKKYIVSDEDFMKLVAVIRLSVPYTGM
ILTAREPKEVREKVLPLGVTQLDFGTNIGVGAYSKGAYSPEKQQFLINDERSLDEGIR
WLAEKGLITSFCTAGYRCGRTGNYFMDIAKKGKVHKLCMPNAILTFKEYLLDYASEET
RKVGEKLIEKELESLDPKIKGIIQDYLKRIEKGERDLYV"
misc_feature 133323..134729
/locus_tag="Dester_0144"
/note="thiamine biosynthesis protein ThiH; Reviewed;
Region: thiH; PRK09613"
/db_xref="CDD:236590"
misc_feature 133584..134192
/locus_tag="Dester_0144"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(133602..133604,133608..133610,133614..133616,
133620..133628,133734..133736,133740..133745,
133833..133841,133908..133910,134145..134150)
/locus_tag="Dester_0144"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 134136..134462
/locus_tag="Dester_0144"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; smart00876"
/db_xref="CDD:214877"
gene 134725..135006
/locus_tag="Dester_0145"
/db_xref="GeneID:10269354"
CDS 134725..135006
/locus_tag="Dester_0145"
/note="KEGG: mhu:Mhun_0497 hypothetical protein;
SPTR: polyribonucleotide nucleotidyltransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280862.1"
/db_xref="GI:325294348"
/db_xref="GeneID:10269354"
/translation="MCKEKVVERFRELQRKLKEVYPDVDVALCELLGRRWSFVEGGSS
NLSPFVKRIKVIERFGISIFYENSQDNLKEIIDFIRGYFNGDFFKEITK"
gene 134975..136102
/locus_tag="Dester_0146"
/db_xref="GeneID:10269355"
CDS 134975..136102
/locus_tag="Dester_0146"
/note="COGs: COG0502 Biotin synthase;
InterPro IPR007197: IPR006638;
KEGG: aar:Acear_2037 radical SAM domain protein;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Fe-hydrogenase assembly protein;
PFAM: Radical SAM superfamily"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_004280863.1"
/db_xref="GI:325294349"
/db_xref="GeneID:10269355"
/translation="MEISSKKLLNELFSNGISRSLLSLADLIRKQKVGNYVYFRGLIE
ISNVCQKNCYYCGLRKDNKNVKRYTLTEDEVVELALLIYKKGIKSLALQSGEMENEAF
FEKLLRIIRKIKEKTKKIDIQNGEEPKGAGITGSFGELEREHYEELFKAGVHRYLLRI
ETSKRELYEKLHPSDHSFEKRLKCLKWLKEIGYQVGTGVIIGIPGQTYEDLVNDLLFF
KDFDIDMIGMGPYIEHRDTPIFCWYKDLITSNGFYKKVFELSIKMIAFARILLEDVNI
VASTALQSVPGCENALELGIKAGANVVMPVFTPYSERKNYRIYEGKKNLTPEEMSQRI
KKAGYEPVWDKWGDPLHFFKRNKMSNSLLCNFVNFSSMKNS"
misc_feature 134987..136003
/locus_tag="Dester_0146"
/note="biotin synthase; Provisional; Region: PRK07094"
/db_xref="CDD:180835"
misc_feature 135101..135688
/locus_tag="Dester_0146"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(135119..135121,135125..135127,135131..135133,
135137..135145,135251..135253,135257..135262,
135374..135382,135449..135451,135572..135574,
135662..135667)
/locus_tag="Dester_0146"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature <135755..135997
/locus_tag="Dester_0146"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; smart00876"
/db_xref="CDD:214877"
gene complement(136049..136327)
/locus_tag="Dester_0147"
/db_xref="GeneID:10269356"
CDS complement(136049..136327)
/locus_tag="Dester_0147"
/note="InterPro IPR007712;
KEGG: pca:Pcar_1777 cytotoxic translational repressor of
toxin-antitoxin stability system;
PFAM: Plasmid stabilisation system;
SPTR: Toxin-antitoxin system, toxin component, RelE
family;
PFAM: Plasmid stabilisation system protein"
/codon_start=1
/transl_table=11
/product="plasmid stabilization system"
/protein_id="YP_004280864.1"
/db_xref="GI:325294350"
/db_xref="GeneID:10269356"
/translation="MNYKVFYHHKIPEDLREISSETKKRIKSAIENKLMTFPEKYGIP
LRKNLKGFWKLRVGDYRIVFKINCAEKEIYILAILHRRKVYEIAKKRI"
misc_feature complement(136073..136327)
/locus_tag="Dester_0147"
/note="Cytotoxic translational repressor of
toxin-antitoxin stability system [Translation, ribosomal
structure and biogenesis / Cell division and chromosome
partitioning]; Region: RelE; COG2026"
/db_xref="CDD:224937"
gene complement(136317..136550)
/locus_tag="Dester_0148"
/db_xref="GeneID:10269357"
CDS complement(136317..136550)
/locus_tag="Dester_0148"
/note="KEGG: pca:Pcar_1778 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: Ribbon-helix-helix protein, copG family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280865.1"
/db_xref="GI:325294351"
/db_xref="GeneID:10269357"
/translation="MPTKNPRINIVLEESLYEALKKLSKESGLSLSRTARELIKEALE
LREDVVLVKTAEERDYSFDREKALTHEEIWNEL"
gene complement(136635..138158)
/locus_tag="Dester_0149"
/db_xref="GeneID:10269358"
CDS complement(136635..138158)
/locus_tag="Dester_0149"
/note="COGs: COG0433 ATPase;
InterPro IPR018538;
KEGG: mru:mru_1104 ATPase;
PFAM: HerA-ATP synthase, barrel domain;
SPTR: ATPase;
PFAM: HAS barrel domain; Domain of unknown function DUF87;
Bacterial protein of unknown function (DUF853)"
/codon_start=1
/transl_table=11
/product="HerA-ATP synthase, barrel domain"
/protein_id="YP_004280866.1"
/db_xref="GI:325294352"
/db_xref="GeneID:10269358"
/translation="MVKPIGVCIGEPSTREVDFISSEIIQLGDYVELEYEGYKVLGFV
KEIKRVNKSLTEDLEPEDVEHLKTLIGKNSFFLGKISLLGDVDKKMFIPRIPPEPGTN
IFRASKETLQKVFGKNDDRKIHIGHLLTREDVDVFIDIDSIVSRHLAILAVTGGGKSN
TVSVILEGMLDKFGTILVFDMHGEYVNFDYKRNGKPCVRRIDLELNPTRLSYHEFRLF
ANVDDSAYIQDRYLRRAFKITVEEIQNGQISASNFWGRLLGELQAYKTDEAYKEDWKS
ITGVINKVEDMQEFYSDLFNLLQTPIVDQIEFGKLNVLDLSHVDEKIADIVVSHVLRN
ILEKRKAHVRNETGGLEFPVFMILEEAHILASSTINTKSRYWISRIAREGRKFGLGLC
LVTQRPKALDSNALSQANNMIILRLVEPGDQRHVQQASESLSSDLVDQLPSLNVGEAL
IMGKMIPIPALVKIKLARSKKGGNDISAVSEWKKYKESTQISEKDLSNFLELGDTEF"
misc_feature complement(136707..138158)
/locus_tag="Dester_0149"
/note="HerA helicase [Replication, recombination, and
repair]; Region: COG0433"
/db_xref="CDD:223510"
misc_feature complement(137895..138146)
/locus_tag="Dester_0149"
/note="HAS barrel domain; Region: HAS-barrel; pfam09378"
/db_xref="CDD:220214"
misc_feature complement(137154..137792)
/locus_tag="Dester_0149"
/note="Domain of unknown function DUF87; Region: DUF87;
pfam01935"
/db_xref="CDD:216796"
gene complement(138461..140449)
/locus_tag="Dester_0150"
/db_xref="GeneID:10269359"
CDS complement(138461..140449)
/locus_tag="Dester_0150"
/note="COGs: COG1629 Outer membrane receptor protein
mostly Fe transport;
InterPro IPR012910: IPR000531;
KEGG: aar:Acear_0771 TonB-dependent receptor;
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent
receptor, plug;
SPTR: TonB-dependent receptor;
PFAM: TonB dependent receptor; TonB-dependent Receptor
Plug Domain"
/codon_start=1
/transl_table=11
/product="TonB-dependent receptor"
/protein_id="YP_004280867.1"
/db_xref="GI:325294353"
/db_xref="GeneID:10269359"
/translation="MIRKILLLSTFFCLPATAQEVVIEASSAVGIDKTEQKITSQYLS
LKKDIDLLPGLNLASLSSSVSPRDKIFLRSFSPERVYIYLDEFPLNGSGIRGNFYIDL
STLDPEKIKKLEVIYGPSVIYGSNPGGNIIIKTKGFPTKNTLEINSLTGSFGTIKGSV
NYLGSWETNGIELSFGGMKSDGYLRNDFMDSKNGKVTFYHLIGDSTVIKVFAGRYRIK
DGIPVLNDPNNAKTNYDSDYPVVKETYFSLACAPYCKLKLIEKEGENYIERTTDRFGV
SLSKDTDIGLLNLAIYTNKSYKKERYYGFFKTPAGIKLTYLRFNGQDDRTYGFRTTYE
NLSILNGEGIGGIEFQNSGYGQIDKNGKPFVAKNHNALRRFALFGEFKKELPLLTIKT
GLRVENWKGNSITDAPNIKGTQILPSLTLSKKLGSVELFAGTGRVYRPPRAEEILWYS
KEYSDIKSKGYDYDLKAEKGWDYEVGIRKKFPNLKLTARIYRYEIRDFIVSNFEAAKD
VLNKSFPDRIIENLDYYRLNGLEISSNWKLLENLSVYTAYSYQDTKTSKSKFTPDKTP
DPSVLIPKHKLTTAITKKNLLKRDALKLTGTFYSKRNGYTEKLPGLGVIDVSYSISPV
KNITFNFQINNLFDKKYYYVENYEMPGRNYSLSIKALF"
sig_peptide complement(140396..140449)
/locus_tag="Dester_0150"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(138464..140377)
/locus_tag="Dester_0150"
/note="TonB-dependent siderophore receptor; Region:
TonB-siderophor; TIGR01783"
/db_xref="CDD:233575"
misc_feature complement(138464..140350)
/locus_tag="Dester_0150"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:238657"
misc_feature complement(order(140045..140071,140099..140131,
140183..140206,140225..140242,140282..140305,
140306..140308,140336..140350))
/locus_tag="Dester_0150"
/note="N-terminal plug; other site"
/db_xref="CDD:238657"
misc_feature complement(order(139484..139486,139565..139567))
/locus_tag="Dester_0150"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:238657"
gene complement(140588..145000)
/locus_tag="Dester_0151"
/db_xref="GeneID:10269360"
CDS complement(140588..145000)
/locus_tag="Dester_0151"
/note="COGs: COG0086 DNA-directed RNA polymerase beta'
subunit/160 kD subunit;
HAMAP: DNA-directed RNA polymerase, subunit beta-prime;
InterPro IPR007080: IPR000722: IPR007066: IPR007083: IPR
007081: IPR006102: IPR012754: IPR006592;
KEGG: saf:SULAZ_1762 DNA-directed RNA polymerase, beta'
subunit;
PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha
subunit; RNA polymerase Rpb1, domain 3; RNA polymerase
Rpb1, domain 4; RNA polymerase Rpb1, domain 5; Glycoside
hydrolase family 2, immunoglobulin-like beta-sandwich;
SMART: RNA polymerase, N-terminal;
SPTR: DNA-directed RNA polymerase subunit beta';
TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime;
PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1,
domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase
Rpb1, domain 3; RNA polymerase Rpb1, domain 5;
TIGRFAM: DNA-directed RNA polymerase, beta' subunit,
predominant form"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_004280868.1"
/db_xref="GI:325294354"
/db_xref="GeneID:10269360"
/translation="MKKEIVFSEEPKTFDFDAIEIGLASPEKIREWSHGEVKLPETLN
YRTLKPERDGLFCARIFGPIRDWECLCGKYRGSKYAGVVCDRCGVEVTLSKERRKRFG
HIELAAPCTHIWYVKSVPSKIGALLGLSVREVERVVYFESYIVLDPGDEEETGLKKFQ
ILTEEEYREKVEELGEDAFEVGIGADGIKEALKRVDLEELAEELREEIRMYSGEISSI
NADLQKRLPNVFKTAVETLSYYTGLSEDTIVGIVKNVLVVVTDPGDSNLEKGQIIEYN
EYKVLKDKVNIEVEKGGRALDWYVDFLVEQGKIQSKELLKEEIRRATRKDTTEAKLKK
LVRRLRVVESFLNSDNKPEWMVLEVLPVLPPELRPLVPLEGGRFATSDLNDLYRRVIN
RNNRLKRLIELDAPDIIIRNEKRMLQEAVDTLIDNGRRGRPVKSSKGHPLKSLSDVLR
GKQGRFRQNLLGKRVDYSGRAVIVIGPELKMHQCGLPKVMALELFKPFIYRRLEEKGY
ANTVKQAKKMVERQEPEVWECLEEVIKEHPVLLNRAPTLHRVSIQAFEPVLVEGKAIK
LHPLVCTAFNADFDGDQMAVHVPLSLEAQLEAYTLMLSTQNILSPAHGKPLAVPSQDM
VLGLYYMTLEKSGAKGEGKVFSSIDEVLKALDLGEVELHAKIKVRIPENKTESGKPEI
ITTTVGRVKFNTLLPENYPFVNKVMTKKAVAELIGDIHKKLGNEVTVDMLDRIKEAGF
IQATLGGLSISIDDLHIPPSKKELIEKAKKEVAEIEEGYRKGLLSKDERYNKIVDIWT
RVTEQLTKDMMEYMKSHDLNSRGRLPNDGTFNPVFMMLQSGARGSQTQIRQLAGMRGL
MAKPSGEIIETPIISNFREGLTVLEYFISTHGARKGLADTALKTADAGYLTRRLADVA
QDVIVTMEDCGCDDGIEVSALIEAGEIVIPLSKRIAGRYAAEDIVDPVTGEILVKKDE
KITDETAERIEDLGIDTVKIRSVLTCRAPFGVCAKCYGRDLARRRPVQIGESVGIIAA
QSIGEPGTQLTMRTFHIGGIAMRGAEASEYRAKHDGIVRIFDVNTITDKEGNIIVINR
AGKIAVVDEKNGKHLERYDLPYAAVLKVKDGDKVQKGQILAEWDPHAIPILALRNGTV
KYKDILPGITVSETEPVVLEYRTLPYEPTIELLDENGEVIDFYPLPVGARIMVKEGEK
VEIGAQLARLPRRIGGTKDITGGLPRVAELFEARRPKDTAILAEISGKVYVETEKNKK
KITILDPETGVKREYEVPKGKYIYVRTGDFVKAGEPLTDGQLNPHDILAILGERAVAR
FLLDEIQSVYRAQGVDINDKHFEVIIKKMLSKVRIEDSGDSNFLVEEVVDREEFEKVR
EQLFKEGKKPPKAKPVLTGITKAALSTDSFISAASFQETTRVLSEAAIAGKKDYLRGL
KENVIIGRLIPAGTGRKEYRKVTWDYCEKVKENQ"
misc_feature complement(<144428..144958)
/locus_tag="Dester_0151"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:218370"
misc_feature complement(141593..144223)
/locus_tag="Dester_0151"
/note="DNA-directed RNA polymerase subunit beta';
Provisional; Region: PRK00566"
/db_xref="CDD:234794"
misc_feature complement(143114..143878)
/locus_tag="Dester_0151"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:214767"
misc_feature complement(142736..143182)
/locus_tag="Dester_0151"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:218361"
misc_feature complement(142379..142651)
/locus_tag="Dester_0151"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:218372"
misc_feature complement(140768..142375)
/locus_tag="Dester_0151"
/note="RNA polymerase Rpb1, domain 5; Region:
RNA_pol_Rpb1_5; pfam04998"
/db_xref="CDD:147266"
misc_feature complement(<141848..141952)
/locus_tag="Dester_0151"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature complement(141932..141934)
/locus_tag="Dester_0151"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature complement(<141275..141349)
/locus_tag="Dester_0151"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature complement(141083..>141274)
/locus_tag="Dester_0151"
/note="Apocytochrome F, C-terminal; Region:
Apocytochr_F_C; cl03168"
/db_xref="CDD:243328"
misc_feature complement(140648..>141094)
/locus_tag="Dester_0151"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature complement(order(140753..140758,140801..140803))
/locus_tag="Dester_0151"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature complement(order(140651..140653,140663..140668,
140675..140677,140693..140695,140711..140713))
/locus_tag="Dester_0151"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(145055..149395)
/locus_tag="Dester_0152"
/db_xref="GeneID:10269361"
CDS complement(145055..149395)
/locus_tag="Dester_0152"
/note="COGs: COG0085 DNA-directed RNA polymerase beta
subunit/140 kD subunit;
HAMAP: DNA-directed RNA polymerase, beta subunit,
bacterial-type;
InterPro IPR007644: IPR007642: IPR007645: IPR019462: IPR
007120: IPR007641: IPR010243;
KEGG: pmx:PERMA_1189 DNA-directed RNA polymerase subunit
beta;
PFAM: DNA-directed RNA polymerase, subunit 2, domain 6;
RNA polymerase Rpb2, domain 3; RNA polymerase, beta
subunit, protrusion; RNA polymerase Rpb2, domain 2;
DNA-directed RNA polymerase, beta subunit, external 1
domain; RNA polymerase Rpb2, domain 7;
SPTR: DNA-directed RNA polymerase subunit beta;
TIGRFAM: DNA-directed RNA polymerase, beta subunit,
bacterial-type;
PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2,
domain 6; RNA polymerase beta subunit external 1 domain;
RNA polymerase Rpb2, domain 2; RNA polymerase beta
subunit; RNA polymerase Rpb2, domain 7;
TIGRFAM: DNA-directed RNA polymerase, beta subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_004280869.1"
/db_xref="GI:325294355"
/db_xref="GeneID:10269361"
/translation="MGKIQKAAPSVETKKITSLPRKSFAKRKETFPIPDLLQFPFESY
ERFLQLNKAPDKRENVGLESAFRQAFPIVDESSGVEIHYKGYEIGDWYCKCGKFQGLG
GKGVVCPKCGMEVVFRPKYSPDECKERGIDYSAPLRVLFELHIWQKDPKTGEKIAPII
KENKMYFGEIPLMTERGTFIINGTEKVVVSQLHRSPGLFFKSEVSKTTQVARIIDIAS
IIPAMGSWLEFEIPYNEILYAKIDRKRRFIGTYLLRAFGIRTDEEILNLFYGDAIETF
KVENGEVVKVENGEVVNIKTGEIKTQEELTGYYLVSDVIDPETGEIVQEAYEELSTSS
RKLPEGAEFKAIHSKATPYGAVIVNTLRKEKRDRVREKIDDPLIAAYVEIFRKVRPGD
TATVEGAKKLFESMFFSTKNYDLSRVGRAKINEKVYPKEKLSKLTKEDLKSIEWLPPL
RVAEDIYNEEGDIVVPKGTLINSEVALKLASLNIEEIPVEPDYDDAGRILHKADIIGA
VKALLEVHAGLREYDDIDHLGNRRVRGVGELAEIAFKSGLFKLEKAVKEKLAVADVDS
VMPQDLINPRTALNPLKEFFTLTSLCQFMDQTNPLAETTHKRRLSALGPGGLTRERAG
FEVRDVHPSHYGRICPIETPEGQNIGLINSLTTYGRINWLGFLETPYRKVVNGKVTDE
IVYMTAEEEENYVIAQANAPVDENGYIAADTVMARHKAEFKLVKREEVQFMDVSPKQV
FSVSSSLIPFLEHDDANRALMGSNMQRQAVPLIKTEAPFVGTGMEKEVALYSRSAVVA
KRSGIVESVTADKIIVRVDPEEIEEGGISVDTGFDVYELKKFQKSNQKTCINQRPIVR
KGDRVKRGQIIADGPSMENGELALGKNVLVAFMPWRGYNFEDAILVSERLLKDDVYTS
IHIQEFECEAVETKLGREEITRDIPNVSESLLRNLDESGIVRIGTYVKPGDILVGKVT
PKGEQVLTPEEKLLQAIFGEKAKGVKDSSLYVPHGVEGVVIDVKILSRKGEKKDPRTQ
LIEAEEKARLEREKQEEIALIKKDRDRKAAEVILGKKVREDVYDAAGNLVLSAGETIT
EDKVEQMVFFALRKPSVIDDEKATEELKKIRLRAVDKIALVENIYEEKKAALEMGHDL
PAGVNKKVKVYIATKRKLTIGDKMSGRHGNKGVISQIRPVEDMPFLEDGTPIDIVLNP
LGVPSRMNVGQILEVHLGLAAKALGEKIEKLMKAGLKQVREEIKAIYNDERISKLIDS
LSDNELKEVAKKLSKGIKFESPIFNGAKEEEIKELLKRAGLPETGRLKVYDGLTGEPF
DQDVTVGYMYMLKLIHLADDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVEGRSRVYEAIVKGKYSFEPGLPESFNVLVRELKALALDV
KFIKNVEEEE"
misc_feature complement(<148649..149290)
/locus_tag="Dester_0152"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature complement(<147929..>148045)
/locus_tag="Dester_0152"
/note="MoCF_BD: molybdenum cofactor (MoCF) binding domain
(BD). This domain is found a variety of proteins involved
in biosynthesis of molybdopterin cofactor, like MoaB,
MogA, and MoeA. The domain is presumed to bind
molybdopterin; Region: MoCF_BD; cl00451"
/db_xref="CDD:241870"
misc_feature complement(<146645..>147886)
/locus_tag="Dester_0152"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature complement(order(146816..146818,146822..146830,
146840..146842,146846..146848,146981..146983))
/locus_tag="Dester_0152"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(<146312..>146845)
/locus_tag="Dester_0152"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl17585"
/db_xref="CDD:248139"
misc_feature complement(order(146672..146674,146714..146716))
/locus_tag="Dester_0152"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(146516..146518,146522..146530,
146540..146542,146546..146548,146657..146659))
/locus_tag="Dester_0152"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(145079..>145963)
/locus_tag="Dester_0152"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:238353"
misc_feature complement(order(145427..145429,145433..145456,
145814..145819,145823..145825,145832..145840,
145913..145915,145919..145921))
/locus_tag="Dester_0152"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(145079..145081,145085..145087,
145091..145102,145106..145108,145112..145117,
145121..145123,145127..145129,145139..145141,
145208..145210,145220..145237,145241..145258,
145262..145264,145268..145273,145277..145279,
145289..145297,145358..145363,145367..145375,
145382..145384,145421..145423,145427..145435,
145457..145459,145538..145540,145736..145738,
145748..145750,145763..145765,145772..145774,
145781..145783,145787..145789,145853..145855,
145859..145861,145865..145867))
/locus_tag="Dester_0152"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(145451..145453,145841..145843))
/locus_tag="Dester_0152"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
misc_feature complement(order(145418..145420,145469..145471,
145709..145711,145715..145720,145799..145801,
145838..145840))
/locus_tag="Dester_0152"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:238353"
gene complement(149533..149919)
/locus_tag="Dester_0153"
/db_xref="GeneID:10269362"
CDS complement(149533..149919)
/locus_tag="Dester_0153"
/note="COGs: COG0222 ribosomal protein L7/L12;
HAMAP: ribosomal protein L7/L12;
InterPro IPR013823: IPR000206;
KEGG: pmx:PERMA_1188 50S ribosomal protein L7/L12;
PFAM: ribosomal protein L7/L12, C-terminal;
SPTR: 50S ribosomal protein L7/L12;
TIGRFAM: ribosomal protein L7/L12;
PFAM: ribosomal protein L7/L12 C-terminal domain;
TIGRFAM: ribosomal protein L7/L12"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_004280870.1"
/db_xref="GI:325294356"
/db_xref="GeneID:10269362"
/translation="MAEITKEQIIEAIKNMTVLELVDLINAIKEEFDVSDMPVVAAGA
VAAPGAAAGAAAEEKTEFDVILKSPGAKKINVIKVVREVTGLGLKEAKELVDNAPKPV
KEGVSKEEAEEIKKKLEEAGAEVEVK"
misc_feature complement(149599..149910)
/locus_tag="Dester_0153"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature complement(order(149599..149601,149605..149610,
149650..149655,149659..149661,149665..149670,
149674..149676,149737..149742,149770..149778,
149782..149787,149794..149796,149833..149835,
149842..149844,149851..149856,149863..149871,
149908..149910))
/locus_tag="Dester_0153"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature complement(order(149824..149826,149839..149841,
149878..149880,149890..149892,149899..149901))
/locus_tag="Dester_0153"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature complement(order(149824..149826,149833..149835,
149845..149850,149857..149859))
/locus_tag="Dester_0153"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature complement(order(149644..149646,149653..149658,
149677..149679,149686..149691,149698..149703))
/locus_tag="Dester_0153"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature complement(order(149644..149646,149653..149658,
149677..149679,149686..149688,149698..149700))
/locus_tag="Dester_0153"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature complement(order(149677..149679,149686..149691,
149698..149700))
/locus_tag="Dester_0153"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene complement(149943..150470)
/locus_tag="Dester_0154"
/db_xref="GeneID:10269363"
CDS complement(149943..150470)
/locus_tag="Dester_0154"
/note="COGs: COG0244 ribosomal protein L10;
HAMAP: 50S ribosomal protein L10;
InterPro IPR001790;
KEGG: dol:Dole_0700 ribosomal protein L10;
PFAM: ribosomal protein L10;
SPTR: 50S ribosomal protein L10;
PFAM: ribosomal protein L10"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_004280871.1"
/db_xref="GI:325294357"
/db_xref="GeneID:10269363"
/translation="MKTRKAKEQIVKELKEKFEKASLVILTNFDGMTVAESNKLRRSL
KEVGAEYKVVKNTLMRYAYPGTPVEQIKDAFTGPTGIVFAFDDIVAAAKALKEFFEEK
DSKLKFKAAVVEGKVADVEMIKQLASLPGREELLGQLAFTLKYPVNAVAWSLDNLFQK
LVTVLENVKAEKESA"
misc_feature complement(149961..150464)
/locus_tag="Dester_0154"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:240223"
misc_feature complement(order(150288..150290,150297..150308,
150438..150440,150447..150452))
/locus_tag="Dester_0154"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:240223"
misc_feature complement(order(149964..149969,149973..149978,
149985..149993,150030..150047,150051..150056,
150063..150068,150075..150077,150123..150125,
150132..150134,150204..150206))
/locus_tag="Dester_0154"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:240223"
gene complement(150660..151382)
/locus_tag="Dester_0155"
/db_xref="GeneID:10269364"
CDS complement(150660..151382)
/locus_tag="Dester_0155"
/note="COGs: COG0081 ribosomal protein L1;
InterPro IPR002143: IPR005878;
KEGG: pmx:PERMA_1186 50S ribosomal protein L1;
PFAM: ribosomal protein L1;
SPTR: ribosomal protein;
TIGRFAM: ribosomal protein L1, bacterial-type;
PFAM: ribosomal protein L1p/L10e family;
TIGRFAM: ribosomal protein L1, bacterial/chloroplast"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_004280872.1"
/db_xref="GI:325294358"
/db_xref="GeneID:10269364"
/translation="MPKHGKKYMNALALIERGKLYPLDEAIGLVKKMADVTKRNFDQT
VEMAVRLNVDPKYQDQMVRGSVVLPHGLGKERKVAVIAQGEKLQEAQEAGADFVGGDD
LIQKIQQGWLDFDILIATPDMMSKVGRLGRILGPRGLMPNPKTGTVTFDIAKAVKEAK
SGKVDFKVEKAGIVHAPIGKVSFDEQKLLENAVALLKAILAVKPSGAKGQYVKSIAVS
ATMDPGVKVDIFDAINRAQSAE"
misc_feature complement(150702..151316)
/locus_tag="Dester_0155"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:238235"
misc_feature complement(order(150711..150713,150717..150722,
150858..150860,150864..150866,150870..150872,
151233..151235,151239..151241,151245..151247,
151251..151253,151260..151268))
/locus_tag="Dester_0155"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238235"
gene complement(151468..151893)
/locus_tag="Dester_0156"
/db_xref="GeneID:10269365"
CDS complement(151468..151893)
/locus_tag="Dester_0156"
/note="COGs: COG0080 ribosomal protein L11;
InterPro IPR020784: IPR020783: IPR006519: IPR000911;
KEGG: trq:TRQ2_0481 50S ribosomal protein L11;
PFAM: ribosomal protein L11, C-terminal; ribosomal protein
L11, N-terminal;
SMART: ribosomal protein L11;
SPTR: 50S ribosomal protein L11;
TIGRFAM: ribosomal protein L11, bacterial-type;
PFAM: ribosomal protein L11, RNA binding domain; ribosomal
protein L11, N-terminal domain;
TIGRFAM: 50S ribosomal protein L11"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_004280873.1"
/db_xref="GI:325294359"
/db_xref="GeneID:10269365"
/translation="MAKKVVAEVKLQLPAGEATPAPPVGPALGQHGVNIMEFVKAFNA
ATADKKGLVIPVVITIYADRSFTFVLKTPPASVLIKKAAGIEKGAHQPKKEWVGQITK
EQLRQIAEQKMQDLNCYDIESAMKIIAGTAENMGVKVVE"
misc_feature complement(151471..151893)
/locus_tag="Dester_0156"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:234661"
misc_feature complement(151477..151869)
/locus_tag="Dester_0156"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature complement(order(151489..151497,151501..151506,
151513..151518,151525..151527,151537..151545,
151558..151560,151633..151635,151654..151656,
151666..151674,151804..151806,151864..151866))
/locus_tag="Dester_0156"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature complement(order(151540..151545,151552..151557,
151687..151692,151696..151698,151708..151719,
151723..151725,151864..151866))
/locus_tag="Dester_0156"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature complement(order(151804..151806,151816..151818))
/locus_tag="Dester_0156"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature complement(order(151606..151608,151615..151617))
/locus_tag="Dester_0156"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene complement(151914..152651)
/locus_tag="Dester_0157"
/db_xref="GeneID:10269366"
CDS complement(151914..152651)
/locus_tag="Dester_0157"
/note="COGs: COG0250 transcription antiterminator;
InterPro IPR006645: IPR005824: IPR001062;
KEGG: pmx:PERMA_1184 transcription
termination/antitermination factor NusG;
PFAM: transcription antitermination protein, NusG,
N-terminal; KOW;
SMART: transcription antitermination protein, NusG,
N-terminal; KOW;
SPTR: transcription antitermination protein nusG;
TIGRFAM: transcription antitermination protein, NusG;
PFAM: transcription termination factor nusG; KOW motif;
TIGRFAM: transcription termination/antitermination factor
NusG"
/codon_start=1
/transl_table=11
/product="NusG antitermination factor"
/protein_id="YP_004280874.1"
/db_xref="GI:325294360"
/db_xref="GeneID:10269366"
/translation="MEEKKWYSLHVQSGFENRVKANILKALKEEGLENKVEEIFIPAV
EKVIFKVAGKEKGEIPLRGEPRIHEIEGEEGKKVVFKIEDGKVWVESCECEKKKCIPD
KPIEKIGQKIKCPENKVEAKIELRDKLYPGYIFIKADLDKNVQSTIRRVPRVLGFVSA
GGKPVVVPEAEIQAMRERLKKGVPKIKKLKFDIGDKVKIKEGPFIGFEGSISEIDPER
EKIIVLVNIFDRQTPVELEFDQIEKIS"
misc_feature complement(151917..152651)
/locus_tag="Dester_0157"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature complement(<152484..152639)
/locus_tag="Dester_0157"
/note="N-Utilization Substance G (NusG) N-terminal (NGN)
domain Superfamily; Region: NGN; cl02766"
/db_xref="CDD:243169"
misc_feature complement(152274..152519)
/locus_tag="Dester_0157"
/note="NGN-insert domain found between N-terminal domain
(D1) and C-terminal KOW domain (DIII) repeats of some
N-Utilization Substance G (NusG) N-terminal (NGN); Region:
NGN-insert_like; cd09910"
/db_xref="CDD:197364"
misc_feature complement(152115..>152306)
/locus_tag="Dester_0157"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature complement(order(152127..152129,152151..152153,
152247..152249,152253..152255,152262..152264))
/locus_tag="Dester_0157"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature complement(151923..152081)
/locus_tag="Dester_0157"
/note="NusG contains an NGN domain at its N-terminus and
KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
/db_xref="CDD:240515"
misc_feature complement(order(151932..151937,151947..151958,
151962..151970,151995..151997,152031..152033,
152040..152054))
/locus_tag="Dester_0157"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
misc_feature complement(152043..152054)
/locus_tag="Dester_0157"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:240515"
gene complement(152665..152847)
/locus_tag="Dester_0158"
/db_xref="GeneID:10269367"
CDS complement(152665..152847)
/locus_tag="Dester_0158"
/note="InterPro IPR001901: IPR005807;
KEGG: saf:SULAZ_1769 preprotein translocase, SecE subunit;
PFAM: Protein secE/sec61-gamma protein;
SPTR: Preprotein translocase, SecE subunit;
TIGRFAM: SecE subunit of protein translocation complex;
PFAM: SecE/Sec61-gamma subunits of protein translocation
complex;
TIGRFAM: preprotein translocase, SecE subunit, bacterial"
/codon_start=1
/transl_table=11
/product="Preprotein translocase subunit SecE"
/protein_id="YP_004280875.1"
/db_xref="GI:325294361"
/db_xref="GeneID:10269367"
/translation="MSPITFLKEVREELSRVTWPSKEEVIEATAGIVIFCIVVAVYFW
ALDFVFSELLKLIIEK"
misc_feature complement(152677..152844)
/locus_tag="Dester_0158"
/note="SecE/Sec61-gamma subunits of protein translocation
complex; Region: SecE; pfam00584"
/db_xref="CDD:201325"
gene complement(152944..153019)
/locus_tag="Dester_R0002"
/db_xref="GeneID:10269368"
tRNA complement(152944..153019)
/locus_tag="Dester_R0002"
/product="tRNA-Trp"
/db_xref="GeneID:10269368"
gene complement(153046..153210)
/locus_tag="Dester_0159"
/db_xref="GeneID:10269369"
CDS complement(153046..153210)
/locus_tag="Dester_0159"
/note="COGs: COG0267 ribosomal protein L33;
HAMAP: ribosomal protein L33;
InterPro IPR001705;
KEGG: ols:Olsu_1628 LSU ribosomal protein L33P;
PFAM: ribosomal protein L33;
SPTR: 50S ribosomal protein L33;
TIGRFAM: ribosomal protein L33;
PFAM: ribosomal protein L33;
TIGRFAM: ribosomal protein L33, bacterial type"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_004280876.1"
/db_xref="GI:325294362"
/db_xref="GeneID:10269369"
/translation="MAKKGPREIIQLACTECKRRNYSTTKNKRNTPDRLELKKYCPWC
NKHTLHKEVK"
misc_feature complement(153049..153198)
/locus_tag="Dester_0159"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00504"
/db_xref="CDD:234783"
gene complement(153240..154436)
/locus_tag="Dester_0160"
/db_xref="GeneID:10269370"
CDS complement(153240..154436)
/locus_tag="Dester_0160"
/note="COGs: COG0050 GTPase - translation elongation
factors;
InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR
005225;
KEGG: toc:Toce_2107 translation elongation factor 1A
(EF-1A/EF-Tu);
PFAM: Protein synthesis factor, GTP-binding; translation
elongation factor EFTu/EF1A, domain 2; translation
elongation factor EFTu/EF1A, C-terminal;
SPTR: translation elongation factor 1A (EF-1A/EF-Tu);
TIGRFAM: translation elongation factor EFTu/EF1A,
bacterial/organelle; Small GTP-binding protein;
PFAM: Elongation factor Tu domain 2; Elongation factor Tu
C-terminal domain; Elongation factor Tu GTP binding
domain;
TIGRFAM: small GTP-binding protein domain; translation
elongation factor TU"
/codon_start=1
/transl_table=11
/product="translation elongation factor Tu"
/protein_id="YP_004280877.1"
/db_xref="GI:325294363"
/db_xref="GeneID:10269370"
/translation="MAKQKFERTKPHKNVGTIGHVDHGKTTLTAAITHCLALQGKAQE
VAYDQIDKAPEERERGITIATAHVEYESDKYHYAHVDCPGHADYIKNMITGAAQMDGA
ILVVSAADGPMPQTREHVLLARQVNVPYIVVFLNKVDMVDDEELLELVELEVRELLNE
YDFPGDEVPVIKGSALKALECTSPDCPDCQPIYELVNALDEYVPEPVREVDKPFLMPI
EDVFSISGRGTVVTGRVERGKLTVGEEVEIVGLREEPIKTVATGIEMFRKVLDEALPG
DNVGILLRGVGKDEVERGMVVAKPGSINPHKKFKAEVYILSKEEGGRHTPFFNGYQPQ
FYFRTTDVTGKVKLPEGVEMVMPGDNVTFEVELLKPVAIEEGLRFAIREGGKTVGAGV
VTEILD"
misc_feature complement(153243..154436)
/locus_tag="Dester_0160"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature complement(153819..154406)
/locus_tag="Dester_0160"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature complement(154359..154382)
/locus_tag="Dester_0160"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature complement(order(153897..153902,153978..153980,
153990..153992,154083..154085,154092..154103,
154107..154112,154179..154184,154236..154241,
154323..154325,154335..154340,154347..154349,
154356..154361,154371..154373,154377..154379))
/locus_tag="Dester_0160"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature complement(order(153909..153917,154020..154022,
154026..154031,154296..154298,154356..154373))
/locus_tag="Dester_0160"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature complement(154239..154271)
/locus_tag="Dester_0160"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature complement(154251..154253)
/locus_tag="Dester_0160"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature complement(154185..154196)
/locus_tag="Dester_0160"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature complement(154134..154190)
/locus_tag="Dester_0160"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature complement(154020..154031)
/locus_tag="Dester_0160"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature complement(153909..153917)
/locus_tag="Dester_0160"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature complement(153534..153797)
/locus_tag="Dester_0160"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature complement(153258..153524)
/locus_tag="Dester_0160"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature complement(order(153267..153269,153297..153305,
153423..153425,153477..153485,153489..153491))
/locus_tag="Dester_0160"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene complement(154620..154696)
/locus_tag="Dester_R0003"
/db_xref="GeneID:10269371"
tRNA complement(154620..154696)
/locus_tag="Dester_R0003"
/product="tRNA-Thr"
/db_xref="GeneID:10269371"
gene complement(154804..155802)
/locus_tag="Dester_0161"
/pseudo
/db_xref="GeneID:10269372"
gene 156054..157400
/locus_tag="Dester_0162"
/db_xref="GeneID:10269373"
CDS 156054..157400
/locus_tag="Dester_0162"
/note="KEGG: psl:Psta_4092 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280878.1"
/db_xref="GI:325294364"
/db_xref="GeneID:10269373"
/translation="MRKALKVATLMGLAAALIVPSTPSKAADDMEMGNTKVTIGGELR
ERIEWYANDVGTGEGRDIYIPMRAKLKLKAELSDGVSAVFVPEAAFNAGSHFHGVGTN
GLDLNKEVAQDSINIHEAYFLLSNPFGINNVIVKAGRQEVNLGNERLVSSNDWFQEDR
SLDGILLGYVAGDYGLAGFFYGKLEDTKGKVGTDKNGEPIYDIDLYVATWQGSFKPFG
FGGTYELTDVYINPTVANFDLNTIYARVTPEVDVEFGKVKANVEGAWQSGNADQVAVA
GANFKGYMYSVGAGADLNYAWNPSVFVGYDVYSGDDGKGDFNAFLAPVPNVDKFLGAY
NQFDQSLGAYLGMSDAKFVKEGIKDLYFKVGANPTEKIGLSFGYHYLKSDKDFSNGGN
NIGWEVDLGAFYEYSKNLCFEAGWSHLDPDKDYANDYLNGEDKAGDWIYTQATVKF"
sig_peptide 156054..156131
/locus_tag="Dester_0162"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 156831..157310
/locus_tag="Dester_0162"
/note="Domain of unknown function (DUF4104); Region:
DUF4104; pfam13372"
/db_xref="CDD:222082"
gene complement(157513..158082)
/locus_tag="Dester_0163"
/db_xref="GeneID:10269374"
CDS complement(157513..158082)
/locus_tag="Dester_0163"
/note="COGs: COG1544 ribosome-associated protein Y
(PSrp-1);
InterPro IPR003489;
KEGG: efa:EF1764 ribosomal subunit interface protein;
PFAM: ribosomal protein S30Ae/sigma 54 modulation protein;
SPTR: ribosomal subunit interface protein;
TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation
protein;
PFAM: Sigma 54 modulation protein / S30EA ribosomal
protein;
TIGRFAM: ribosomal subunit interface protein"
/codon_start=1
/transl_table=11
/product="sigma 54 modulation protein/ribosomal protein
S30EA"
/protein_id="YP_004280879.1"
/db_xref="GI:325294365"
/db_xref="GeneID:10269374"
/translation="MATLKLHLTGDGIDLTGAIKNTLEEKFKKLEKYLGDDEEREISA
DIVVKKEKYRASVEIVIYHVFDHTLRIKKETDDLYTAIDYVVDAAEKQLRRLKDKVVT
EAKRDAQKNSFKRSITFVEEEVVEKPVEIIEVEPELYKPISVEDAVIKLLGSNREFVV
FCNVETGNAAVVYKRKDGNVGLIEMPSCK"
misc_feature complement(157786..158070)
/locus_tag="Dester_0163"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal...; Region: RaiA; cd00552"
/db_xref="CDD:238308"
misc_feature complement(order(157786..157788,157798..157803,
157843..157845,157852..157854,157858..157860,
157867..157869,157873..157875,157882..157893,
157903..157905,157930..157932,157942..157944,
157954..157959,157987..157989,157996..157998,
158050..158052,158056..158058,158062..158064))
/locus_tag="Dester_0163"
/note="30S subunit binding site; other site"
/db_xref="CDD:238308"
gene 158144..159127
/locus_tag="Dester_0164"
/db_xref="GeneID:10269375"
CDS 158144..159127
/locus_tag="Dester_0164"
/note="COGs: COG0482
tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase contains the PP-loop ATPase domain;
InterPro IPR008532;
KEGG: swo:Swol_1163 hypothetical protein;
PFAM: Protein of unknown function DUF814;
SPTR: uncharacterized protein;
PFAM: Domain of unknown function (DUF814); Thiamine
biosynthesis protein (ThiI)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280880.1"
/db_xref="GI:325294366"
/db_xref="GeneID:10269375"
/translation="MERKKVYLLFSGGLDSIIAAKLLKDLGFEVIGVHITSPFFQKNL
EDLKNLAKELGINLEFIEAGDDYLEMLKNPVYGYGKNINPCIDCKAYMLRKIKELAKG
NIIATGEVLGQRPMSQHLDAFRKIEKLSGLKGKVLRPLSAKLLPQTVYEEEGIVKKEE
LLDLKGRSRKRYPEILEKLKINLENLPTPAGGCLLTEPIYAKKVKDLMAHDELTWENV
KLLKIGRHFRIGDCKLIIGRNREENRFLRKHKKEEDCVLWTPSIPGPTALLRCKKTPE
SSFLKIAAEIVARYSDAKDRPSVEVAVEKNDKLIDRLTVKPNFNTEEFSIR"
misc_feature 158144..158902
/locus_tag="Dester_0164"
/note="Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis]; Region:
TrmU; COG0482"
/db_xref="CDD:223558"
misc_feature 158156..158677
/locus_tag="Dester_0164"
/note="Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases, ATP sulphurylases Universal
Stress Response protein and electron transfer flavoprotein
(ETF). The domain forms a apha/beta/apha fold which binds
to Adenosine nucleotide; Region: AANH_like; cl00292"
/db_xref="CDD:241758"
misc_feature order(158168..158173,158180..158191,158246..158248,
158252..158254)
/locus_tag="Dester_0164"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238942"
misc_feature 158840..159049
/locus_tag="Dester_0164"
/note="Domain of unknown function (DUF814); Region:
DUF814; pfam05670"
/db_xref="CDD:218683"
gene 159137..159607
/locus_tag="Dester_0165"
/db_xref="GeneID:10269376"
CDS 159137..159607
/locus_tag="Dester_0165"
/note="COGs: COG0589 Universal stress protein UspA and
related nucleotide-binding protein;
InterPro IPR006016;
KEGG: shc:Shell_0130 UspA domain protein;
PFAM: UspA;
SPTR: uncharacterized protein;
PFAM: Universal stress protein family"
/codon_start=1
/transl_table=11
/product="UspA domain-containing protein"
/protein_id="YP_004280881.1"
/db_xref="GI:325294367"
/db_xref="GeneID:10269376"
/translation="MPLFEKILYSTDFSPLAEYALDYVRKLKNAGTKEVIVVHVVDDV
SIELPEGADLIKEKELFKILPDLDQEYVTTLLQKLETIKNKLEREGLSAKIYLKYGNV
SKQIVNIAESEKVRLIIMGAHGKGLLTEILLGSVSTDVIRNAKCPVLIIKKEEG"
misc_feature 159152..159589
/locus_tag="Dester_0165"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature order(159164..159172,159254..159256,159494..159499,
159503..159508,159536..159547)
/locus_tag="Dester_0165"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene 159607..160080
/locus_tag="Dester_0166"
/db_xref="GeneID:10269377"
CDS 159607..160080
/locus_tag="Dester_0166"
/note="KEGG: shc:Shell_0130 UspA domain protein;
SPTR: uncharacterized protein;
PFAM: Universal stress protein family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280882.1"
/db_xref="GI:325294368"
/db_xref="GeneID:10269377"
/translation="MLFQKILYPIDLEEASLEVKPYIFKLKNAGCMEVHLLYVMLHSE
WGLISKENYNSEEKIEALKASLSEGYVDGLKRRFLKLKEIAKEFEEKGIKTVISLIPG
ELEEVIASYAEENDIKLIALGISAESLSFFNVGEILGIIKASTKPILIVKSKKKE"
misc_feature 159619..160059
/locus_tag="Dester_0166"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:238182"
misc_feature order(159631..159639,159721..159723,159970..159975,
159979..159984,160009..160020)
/locus_tag="Dester_0166"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238182"
gene complement(160116..160742)
/locus_tag="Dester_0167"
/db_xref="GeneID:10269378"
CDS complement(160116..160742)
/locus_tag="Dester_0167"
/note="COGs: COG1014 Pyruvate:ferredoxin oxidoreductase
and related 2-oxoacid:ferredoxin oxidoreductase gamma
subunit;
InterPro IPR019752;
KEGG: aba:Acid345_1808 2-oxoglutarate ferredoxin
oxidoreductase, gamma subunit;
PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic
domain;
SPTR: 2-oxoglutarate ferredoxin oxidoreductase, gamma
subunit;
PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase"
/codon_start=1
/transl_table=11
/product="pyruvate/ketoisovalerate oxidoreductase"
/protein_id="YP_004280883.1"
/db_xref="GI:325294369"
/db_xref="GeneID:10269378"
/translation="MRYEVRVIGSAGQGSILAAVVLANAAAEEGLNATQTATYGAAMR
SGVSLGDVVISTEPIDFPKTINLDAVIIQSQEAYDDMVKRNPVKFDPECGEQDADILV
NVKPGGLVIVDEDLVQCNADCNMYRIVSAPIARTATEVLGKRQVMNILALGVFQVASS
LHFDGKSLISEESFLRAIEKNVPSRFVELNKKAFMEGVKLGKAALQKA"
misc_feature complement(160143..160742)
/locus_tag="Dester_0167"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
gamma; Validated; Region: PRK08537"
/db_xref="CDD:181462"
sig_peptide complement(160668..160742)
/locus_tag="Dester_0167"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(160137..160733)
/locus_tag="Dester_0167"
/note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
Region: POR; cl00546"
/db_xref="CDD:241937"
gene complement(160739..161587)
/locus_tag="Dester_0168"
/db_xref="GeneID:10269379"
CDS complement(160739..161587)
/locus_tag="Dester_0168"
/EC_number="1.2.7.3"
/note="COGs: COG1013 Pyruvate:ferredoxin oxidoreductase
and related 2-oxoacid:ferredoxin oxidoreductase beta
subunit;
InterPro IPR011766;
KEGG: dap:Dacet_2341 thiamine pyrophosphate protein domain
protein TPP-binding protein;
PFAM: Thiamine pyrophosphate enzyme, C-terminal
TPP-binding;
PRIAM: 2-oxoglutarate synthase;
SPTR: Thiamine pyrophosphate protein domain protein
TPP-binding protein;
PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP
binding domain"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate synthase"
/protein_id="YP_004280884.1"
/db_xref="GI:325294370"
/db_xref="GeneID:10269379"
/translation="MNIPMEKIVEKKPYFKYLRLNKMPTIWCPGCGIGQAFRATCMAL
HELGIPNDKVAMVSGIGCSSRTPGYFDGFTLHTTHGRALTAATGLKLYKPELTTIVFS
GDGDSLAIGGNHFIHAARRNIDITLVLINNWIYGMTGGQVSPTTPKGSYATTTPYGNY
EPNFDIAKMAIAAGATYVARGTAYHATELAKLIADGIKHKGFSLIEVLSPCTIIYGRK
NRMSIEEMYFWFKENTLPVKAWEKLPEEKRAGKIPRGVLYHDTSRPEYTEVYWNQVKA
LSGGQK"
misc_feature complement(160778..161566)
/locus_tag="Dester_0168"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
beta; Validated; Region: PRK05778"
/db_xref="CDD:235604"
misc_feature complement(160949..161509)
/locus_tag="Dester_0168"
/note="Thiamine pyrophosphate (TPP family), 2-oxoglutarate
ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding
module; OGFOR catalyzes the oxidative decarboxylation of
2-oxo-acids, with ferredoxin acting as an electron
acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR;
cd03375"
/db_xref="CDD:239470"
misc_feature complement(order(161186..161188,161192..161194,
161270..161281,161351..161353))
/locus_tag="Dester_0168"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:239470"
gene complement(161598..162740)
/locus_tag="Dester_0169"
/db_xref="GeneID:10269380"
CDS complement(161598..162740)
/locus_tag="Dester_0169"
/EC_number="1.2.7.3"
/note="COGs: COG0674 Pyruvate:ferredoxin oxidoreductase
and related 2-oxoacid:ferredoxin oxidoreductase alpha
subunit;
InterPro IPR002880: IPR005476;
KEGG: pca:Pcar_1030 2-oxoglutarate ferredoxin
oxidoreductase subunit alpha;
PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase,
N-terminal; transketolase, C-terminal;
PRIAM: 2-oxoglutarate synthase;
SPTR: 2-oxoglutarate ferredoxin oxidoreductase, alpha
subunit;
PFAM: domain; transketolase, C-terminal domain"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate synthase"
/protein_id="YP_004280885.1"
/db_xref="GI:325294371"
/db_xref="GeneID:10269380"
/translation="MAKLELKYGNHACAEAAILVGCDFYAGYPITPSSEIAEKMSELL
PKNNGTFIQMEDEIAAMGAVVGASMAGAKAMTATSGPGFSLKQENIGLAFMVEAPCVI
VNVQRGGPSTGLPTQIGQQEIMQSLWGTHGDKLIPVFYPGNVQEIMEETIRAFNWAEK
LRTPVVLLLDEVLGHMRETVDVDRFTPDKIEVWKRKQPAVPPEEYLPYKALEDDVPAI
ADYGTPGYRGHATGLHHDYTGFPTTNPEMCQELIERLIRKVKRCQPEMEKNEEYMLDD
AEIAIVAFGTTARSARTAVQLAREKGIKAGLFRPITIWPSPEETLNKLAKHVKAILVP
ELNMGQYVLEVERCAKGECEVFRMNRANGHVIYPHEILEKLEEIAK"
misc_feature complement(161604..162740)
/locus_tag="Dester_0169"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
alpha; Validated; Region: PRK08659"
/db_xref="CDD:181526"
misc_feature complement(162231..162716)
/locus_tag="Dester_0169"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature complement(order(162357..162362,162411..162416,
162453..162455,162465..162467,162474..162476,
162525..162527,162531..162533,162540..162548,
162552..162557,162576..162587,162627..162629,
162636..162638,162648..162650,162666..162671))
/locus_tag="Dester_0169"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(162465..162467,162474..162476,
162525..162527,162531..162533,162540..162548,
162552..162557,162576..162587,162627..162632,
162648..162650,162654..162659,162666..162671))
/locus_tag="Dester_0169"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(162570..162572,162654..162656))
/locus_tag="Dester_0169"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature complement(order(162420..162422,162648..162650))
/locus_tag="Dester_0169"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
misc_feature complement(<161736..161909)
/locus_tag="Dester_0169"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:217227"
gene complement(162751..162978)
/locus_tag="Dester_0170"
/db_xref="GeneID:10269381"
CDS complement(162751..162978)
/locus_tag="Dester_0170"
/note="KEGG: tai:Taci_0967 4Fe-4S ferredoxin iron-sulfur
binding domain protein;
SPTR: pyruvate ferredoxin oxidoreductase, iron-sulfur
binding subunit"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_004280886.1"
/db_xref="GI:325294372"
/db_xref="GeneID:10269381"
/translation="MAAKAVVVVKEEWCKGCNICAAVCPTKVLELDKVKAVMKVVAPE
KCIGCKQCEMICPDFCIYVFTPEEYEEIQSA"
misc_feature complement(162808..162939)
/locus_tag="Dester_0170"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:221801"
misc_feature complement(162811..>162939)
/locus_tag="Dester_0170"
/note="RPB11 and RPB3 subunits of RNA polymerase; Region:
RNAP_RPB11_RPB3; cl11409"
/db_xref="CDD:245605"
gene complement(162993..163895)
/locus_tag="Dester_0171"
/db_xref="GeneID:10269382"
CDS complement(162993..163895)
/locus_tag="Dester_0171"
/EC_number="6.2.1.5"
/note="COGs: COG0074 succinyl-CoA synthetase alpha
subunit;
InterPro IPR003781: IPR005811: IPR005810;
KEGG: aae:aq_1622 succinyl-CoA ligase alpha subunit;
PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding;
PRIAM: Succinate--CoA ligase (ADP-forming);
SPTR: succinyl-CoA ligase [ADP-forming] subunit alpha;
TIGRFAM: succinyl-CoA ligase, alpha subunit;
PFAM: CoA binding domain; CoA-ligase;
TIGRFAM: succinyl-CoA synthetase, alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA synthetase, alpha subunit"
/protein_id="YP_004280887.1"
/db_xref="GI:325294373"
/db_xref="GeneID:10269382"
/translation="MSVLINKDTKVVVQGLTGKEGSFHAKQCLDYGTQVVAGVTPGKG
GMIWEDDEKRHKVPVFNTVEEAVKETGANASLIFVPPAFAADAIMEAADAGIKIIICI
TEGIPVNDMVKVKRALEGTGVRYVGPNCPGVITPEECKMGIMPGHIFKKGKVGIVSRS
GTLTYEAAYQLTQRGIGQSTVIGIGGDPVPGTTHKEAIEMFNNDPETDAIVLIGEIGG
TMEEEAAEYIKENVEKPVIAYIAGVTAPPGRRMGHAGAIISGGKGDAKSKMDALRAAG
AYVCETPAVIGETVEKALKERGLI"
misc_feature complement(163005..163895)
/locus_tag="Dester_0171"
/note="succinyl-CoA synthetase subunit alpha; Validated;
Region: PRK05678"
/db_xref="CDD:180194"
misc_feature complement(<163653..163886)
/locus_tag="Dester_0171"
/note="CoA binding domain; Region: CoA_binding;
smart00881"
/db_xref="CDD:214881"
misc_feature complement(163065..163427)
/locus_tag="Dester_0171"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:215988"
gene complement(163914..165083)
/locus_tag="Dester_0172"
/db_xref="GeneID:10269383"
CDS complement(163914..165083)
/locus_tag="Dester_0172"
/EC_number="6.2.1.5"
/note="COGs: COG0045 succinyl-CoA synthetase beta subunit;
HAMAP: succinyl-CoA synthetase, beta subunit;
InterPro IPR013650: IPR005811: IPR005809;
KEGG: saf:SULAZ_0638 succinyl-CoA synthetase subunit beta;
PFAM: ATP-grasp fold, succinyl-CoA synthetase-type;
ATP-citrate lyase/succinyl-CoA ligase;
PRIAM: Succinate--CoA ligase (ADP-forming);
SPTR: succinyl-CoA ligase [ADP-forming] subunit beta;
TIGRFAM: succinyl-CoA synthetase, beta subunit;
PFAM: CoA-ligase; ATP-grasp domain;
TIGRFAM: succinyl-CoA synthetase, beta subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA ligase (ADP-forming) subunit beta"
/protein_id="YP_004280888.1"
/db_xref="GI:325294374"
/db_xref="GeneID:10269383"
/translation="MKIHEYQAKEIFKKYKLPVPNGIVVYNAQEAEEAAKELGTPVVV
VKAQVHAGGRGKAGGVKLAKSPEEAGKIASEMIGNRLRTYQNPEGLPINCVLVEAGVN
IDKEFYVGLTLDREVSRPVLMVSAAGGMEIEEIAKTNPELIIKEHIDPAIGLLPYQAR
KIAYKVGITDKNLLSQFVKIAMTLSKMYFELDASLIEINPLVQTKEGEFICLDAKIDF
DDNALFRHKDIQELEDTTQIDPLELEAKKWDLNYVKLDGNIGCMVNGAGLAMATMDTI
KYYGGEPANFLDVGGTATVERVAAAFKLLLSDPNVKAIFVNIFGGIVRCDRIAGGIIE
AAKQVELDRPLIVRLEGTNVELGRKMLEESGLNIIPAKDMADGAQKAVKAAKGKL"
misc_feature complement(163962..165083)
/locus_tag="Dester_0172"
/note="succinyl-CoA synthetase subunit beta; Provisional;
Region: sucC; PRK00696"
/db_xref="CDD:234813"
misc_feature complement(164478..165080)
/locus_tag="Dester_0172"
/note="ATP-grasp domain; Region: ATP-grasp_2; pfam08442"
/db_xref="CDD:219843"
misc_feature complement(163965..164300)
/locus_tag="Dester_0172"
/note="CoA-ligase; Region: Ligase_CoA; pfam00549"
/db_xref="CDD:215988"
gene complement(165242..167347)
/locus_tag="Dester_0173"
/db_xref="GeneID:10269384"
CDS complement(165242..167347)
/locus_tag="Dester_0173"
/note="COGs: COG3437 Response regulator containing a
CheY-like receiver domain and an HD-GYP domain;
InterPro IPR003660: IPR006674: IPR000160: IPR003607;
KEGG: sua:Saut_1723 diguanylate cyclase and metal
dependent phosphohydrolase;
PFAM: Metal-dependent phosphohydrolase, HD subdomain; HAMP
linker domain; Diguanylate cyclase, predicted;
SMART: Metal-dependent phosphohydrolase, HD domain;
SPTR: Metal dependent phosphohydrolase;
PFAM: HAMP domain; HD domain; GGDEF domain"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase and metal dependent
phosphohydrolase"
/protein_id="YP_004280889.1"
/db_xref="GI:325294375"
/db_xref="GeneID:10269384"
/translation="MLKNTDKYWILSVLSLLISGLVTTLSYFSTMSIAKDYFLKDSIK
NAQNYIEVVATSIGSSKKKKELKEILERAPYIEKVSFSSTNPIGKFQLKKELLFPDGT
SEITVTLNKKEISRKAKSLTQLIAVIVFFISTFFQIVLLLLIRKLYLSPLKEIKRDIK
DIYEGKLKKLSEKGSDEFGRIRKSINKMIDSIKEKDTRADIISQFISLLTVGKGFNDE
FVSLMRKVLEITETDGIIIGIIQDNENINLKTITKSDKFELEKKLNELEGIEPYILEL
EKEVETTKKDILSEKEKELGIQYVFGLPMKVFSHKLGFCLFFKESPKALPQEDKNYIR
NIAKSIAISVETRKLISELQEKLKKEEKLTETIIKTLVRGIEIRDSYTRGHSERVAFY
SKRIAEEINLSKEKINNIYMAAILHDIGKIGIPDSILLKPSKLTDKEYEIIKLHPILS
YELLKHIELLEGALDGIRYHHERWNGSGYPKGLKEKEIPIEARIIAIADSFDAMTSNR
IYRKAIDKKKAIKEIKEKAGIFYDPEIVEVALPILMYEEPVGLTEEYLDLSIIREIEE
RRLDYFLRDSLTGVFNRNALEYVYNLMKDKKEAFSVYVVDIAKLREINISQGWKKGDE
ILKRVVSMIEEKFKPSYIVRYAGDNFVFFINETVEEPVVRKRIEEIEKELDIQLSFVE
LHNVENIEDLKKELTRIEL"
sig_peptide complement(167246..167347)
/locus_tag="Dester_0173"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(165635..>166228)
/locus_tag="Dester_0173"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:225116"
misc_feature complement(165818..166195)
/locus_tag="Dester_0173"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature complement(order(165851..165853,166094..166099,
166193..166195))
/locus_tag="Dester_0173"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature complement(166094..166096)
/locus_tag="Dester_0173"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature complement(<165368..165664)
/locus_tag="Dester_0173"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:225109"
misc_feature complement(<165290..165631)
/locus_tag="Dester_0173"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(165404..165406,165530..165532))
/locus_tag="Dester_0173"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(165401..165412,165416..165418,
165479..165481,165491..165493,165503..165508,
165515..165517))
/locus_tag="Dester_0173"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(165341..165343,165425..165427))
/locus_tag="Dester_0173"
/note="I-site; other site"
/db_xref="CDD:143635"
gene complement(167352..167873)
/locus_tag="Dester_0174"
/db_xref="GeneID:10269385"
CDS complement(167352..167873)
/locus_tag="Dester_0174"
/note="KEGG: zin:ZICARI_168 glutamyl-tRNA(Gln)
amidotransferase subunit B;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280890.1"
/db_xref="GI:325294376"
/db_xref="GeneID:10269385"
/translation="MTIKYFILSLFSIFIICGCNSNDDITLITNDKYLLIPLKAANFC
GYFQKNKIGIQMDSVENEKALVRFINFSKYNSIITDKKTTNYILSNSKSWIKLCMIAI
EKTPNTPEIKTKFYLLVKKTLLNNKKKIVTLIKGWNQGVYLLKDPFFYDFLLKEEGLK
YSRNKKFILCIER"
sig_peptide complement(167811..167873)
/locus_tag="Dester_0174"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(167905..169146)
/locus_tag="Dester_0175"
/db_xref="GeneID:10269386"
CDS complement(167905..169146)
/locus_tag="Dester_0175"
/note="COGs: COG0247 Fe-S oxidoreductase;
InterPro IPR004017;
KEGG: aae:aq_1639 oxido/reductase iron sulfur protein;
PFAM: Cysteine-rich domain;
SPTR: Oxido/reductase iron sulfur protein;
PFAM: Cysteine-rich domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280891.1"
/db_xref="GI:325294377"
/db_xref="GeneID:10269386"
/translation="MTEKESKKKILGISDEVIEKCVRCGSCRTVCPVFNVTHEEPSVA
RGKIFLANMINKGNIKLDKEAAGIFNLCATCLRCAEICPLKVDYEKIIISARALCVEK
FGLSPEKKAAVFLFSNRELLKALGKVAAPLTKIFTKSSKSPQNRLFPIDIPKIGKVLL
PEIKSTPFNDKDRWYSAKGKEKGKVAFFSGCMLNNFYTETAQNVVKVLNALGYSVFVP
RDQYCCGAPAFFAGDLKTFEKMKEKNLKTFQNLNVDFVVTACATCGHILKKEYNEPSF
KTKELIEVLFENLEELRKWKFPQKVIVTWHHPCHIVRGQKIPKNYPLDVLKVIENIEF
VNLEEADNCCGMGGSFKLSHPEISKEIQLKKVRNIEKTKSNFVLTECPGCVMNIAEGL
ERINSNIKSLHIADILATCID"
misc_feature complement(<168862..>169146)
/locus_tag="Dester_0175"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:246686"
misc_feature complement(167920..169107)
/locus_tag="Dester_0175"
/note="Fe-S oxidoreductase [Energy production and
conversion]; Region: GlpC; COG0247"
/db_xref="CDD:223325"
misc_feature complement(168343..168594)
/locus_tag="Dester_0175"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
misc_feature complement(167983..168240)
/locus_tag="Dester_0175"
/note="Cysteine-rich domain; Region: CCG; pfam02754"
/db_xref="CDD:202376"
gene complement(169185..169934)
/locus_tag="Dester_0176"
/db_xref="GeneID:10269387"
CDS complement(169185..169934)
/locus_tag="Dester_0176"
/note="COGs: COG0543 2-polyprenylphenol hydroxylase and
related flavodoxin oxidoreductase;
InterPro IPR001433: IPR019480;
KEGG: pmx:PERMA_1386 dihydroorotate dehydrogenase electron
transfer subunit;
PFAM: dihydroorotate dehydrogenase, electron transfer
subunit, iron-sulphur cluster binding domain;
Oxidoreductase FAD/NAD(P)-binding;
SPTR: dihydroorotate dehydrogenase electron transfer
subunit;
PFAM: Iron-sulfur cluster binding domain of dihydroorotate
dehydrogenase B; Oxidoreductase NAD-binding domain"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase, electron transfer
subunit, iron-sulfur cluster binding domain"
/protein_id="YP_004280892.1"
/db_xref="GI:325294378"
/db_xref="GeneID:10269387"
/translation="MEFVFRIVENKRVTGKDYLLTVEVDKNIVEKIKPGQFAMVQVRD
KRQLDPLLRRPLGIFNVERNEVSFLYRVYGRGTELLTEVKEEISILLPLGNYFEDDSE
KYLFIAGGIGIGGLFYTARLFSEKGREVKFLYGERNRENLSGLEFLKKYNIDFEVYTE
DGSYGKKGLVTADLERYRDYKWLACGPTPMLKAIKELAEKLDVNCLLSLDRRMACGVG
ACLGCTVKTTKGYQRCCVEGPIFNSKIVLFD"
misc_feature complement(169191..169919)
/locus_tag="Dester_0176"
/note="dihydroorotate dehydrogenase electron transfer
subunit; Reviewed; Region: PRK00054"
/db_xref="CDD:234601"
misc_feature complement(169209..169916)
/locus_tag="Dester_0176"
/note="FAD/NAD binding domain in the electron transfer
subunit of dihydroorotate dehydrogenase. Dihydroorotate
dehydrogenases (DHODs) catalyze the only redox reaction in
pyrimidine de novo biosynthesis. They catalyze the
oxidation of (S)-dihydroorotate to...; Region:
DHOD_e_trans; cd06218"
/db_xref="CDD:99814"
misc_feature complement(order(169299..169304,169602..169604,
169698..169706,169722..169730,169764..169775,
169779..169781))
/locus_tag="Dester_0176"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature complement(order(169764..169769,169773..169775))
/locus_tag="Dester_0176"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature complement(order(169653..169655,169659..169661,
169689..169691,169698..169700,169707..169709))
/locus_tag="Dester_0176"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99814"
misc_feature complement(order(169590..169592,169596..169607,
169617..169619))
/locus_tag="Dester_0176"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99814"
misc_feature complement(order(169374..169379,169524..169532,
169599..169604))
/locus_tag="Dester_0176"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature complement(order(169230..169232,169266..169268,
169275..169277,169290..169292))
/locus_tag="Dester_0176"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99814"
gene complement(169936..170142)
/locus_tag="Dester_0177"
/db_xref="GeneID:10269388"
CDS complement(169936..170142)
/locus_tag="Dester_0177"
/note="HAMAP: DNA-directed RNA polymerase, omega subunit;
InterPro IPR006110: IPR003716;
KEGG: pmx:PERMA_1423 DNA-directed RNA polymerase, omega
subunit;
PFAM: RNA polymerase Rpb6;
SPTR: RNA polymerase omega subunit;
TIGRFAM: DNA-directed RNA polymerase, omega subunit;
PFAM: RNA polymerase Rpb6;
TIGRFAM: DNA-directed RNA polymerase, omega subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_004280893.1"
/db_xref="GI:325294379"
/db_xref="GeneID:10269388"
/translation="MAKRIPLEPVVEKVGNYYETVHVAAKRARHLYTVDSYTFEKDEK
GEEHKKTVIALMEISEGKICPKRD"
misc_feature complement(169954..170133)
/locus_tag="Dester_0177"
/note="DNA-directed RNA polymerase subunit omega;
Reviewed; Region: rpoZ; PRK00392"
/db_xref="CDD:234744"
gene complement(170135..170788)
/locus_tag="Dester_0178"
/db_xref="GeneID:10269389"
CDS complement(170135..170788)
/locus_tag="Dester_0178"
/EC_number="2.7.4.8"
/note="COGs: COG0194 Guanylate kinase;
HAMAP: Guanylate kinase, sub-group;
InterPro IPR008144: IPR017665: IPR008145;
KEGG: toc:Toce_1022 guanylate kinase;
PFAM: Guanylate kinase;
PRIAM: Guanylate kinase;
SMART: Guanylate kinase/L-type calcium channel;
SPTR: Guanylate kinase;
TIGRFAM: Guanylate kinase, sub-group;
PFAM: Guanylate kinase;
TIGRFAM: guanylate kinase"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_004280894.1"
/db_xref="GI:325294380"
/db_xref="GeneID:10269389"
/translation="MSENLKGLLIVISAPSGTGKTTLSHKLLKTFPSMEFSVSYTTRK
PRKGEVNGRDYFFVDKETFESMIKEGDFLEWAEVYGNLYGTSKSQVMKALEKGKDILL
DIDTQGALQVKKNFPEAVLIFILPPSLRELEKRLRKRGTDDEETIKKRLRIAREEIKK
AFFYDYLLINDDLEVAFEKLRSIITAEKCQVKRLKSQVEKVVKDKEIVLLLKEAENG"
misc_feature complement(170216..170773)
/locus_tag="Dester_0178"
/note="Guanylate kinase [Nucleotide transport and
metabolism]; Region: Gmk; COG0194"
/db_xref="CDD:223272"
misc_feature complement(170246..170764)
/locus_tag="Dester_0178"
/note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine triphosphate
(ATP) to guanosine monophosphate (GMP) to yield adenosine
diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
/db_xref="CDD:238026"
misc_feature complement(order(170540..170542,170555..170557,
170624..170626,170651..170653,170660..170662,
170681..170683,170729..170731,170747..170749))
/locus_tag="Dester_0178"
/note="catalytic site [active]"
/db_xref="CDD:238026"
misc_feature complement(order(170729..170731,170747..170749))
/locus_tag="Dester_0178"
/note="G-X2-G-X-G-K; other site"
/db_xref="CDD:238026"
gene complement(170804..171682)
/locus_tag="Dester_0179"
/db_xref="GeneID:10269390"
CDS complement(170804..171682)
/locus_tag="Dester_0179"
/note="COGs: COG1561 Uncharacterized stress-induced
protein;
InterPro IPR013527: IPR013551: IPR005229;
KEGG: cob:COB47_1492 hypothetical protein;
PFAM: Domain of unknown function DUF1732; YicC-like,
N-terminal;
SPTR: uncharacterized protein;
TIGRFAM: Conserved hypothetical protein CHP00255;
PFAM: YicC-like family, N-terminal region; Domain of
unknown function (DUF1732);
TIGRFAM: conserved hypothetical protein TIGR00255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280895.1"
/db_xref="GI:325294381"
/db_xref="GeneID:10269390"
/translation="MKSMTGFGKCTKANEEIEVSVEIRTLNGKSLRVRYSLPRAFNPF
LNEINNIIRDYIKRGEVDLHIRYRLSPNTTVPVTINYKEALKYIQASDRIGALSGRKI
EVSLRDLLSIPDLFMKEEIDLTSHSEILFEALKGALEEVEEARRKEGEKLKAYCEERL
KVIEEVLKELQSQIKDIEKRLFERLKEKVEKLLSIEEFSEDFQKRIELEVALLAEKQD
VSEEISRLHTHIARFRELLEFNEPVGKTLDFLCQEIHREINTLGNKIKEVDITEPVLK
IKTEVAKLKEQVQNIE"
misc_feature complement(170807..171682)
/locus_tag="Dester_0179"
/note="hypothetical protein; Provisional; Region:
PRK11820"
/db_xref="CDD:236993"
misc_feature complement(171269..171682)
/locus_tag="Dester_0179"
/note="YicC-like family, N-terminal region; Region:
YicC_N; pfam03755"
/db_xref="CDD:217714"
misc_feature complement(170807..171058)
/locus_tag="Dester_0179"
/note="Domain of unknown function (DUF1732); Region:
DUF1732; pfam08340"
/db_xref="CDD:149411"
gene complement(171692..173014)
/locus_tag="Dester_0180"
/db_xref="GeneID:10269391"
CDS complement(171692..173014)
/locus_tag="Dester_0180"
/note="KEGG: gbm:Gbem_2510 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: SurA N-terminal domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280896.1"
/db_xref="GI:325294382"
/db_xref="GeneID:10269391"
/translation="MLSKIRKNMRAFSLPLWIVAASFVGTIFLVWGKGSLTGPSGSEV
ATVNGEPIDLIEFNREYNQLTNQLQQQFGENYRKLFPDKEIKIAALQRLINRKLVLEE
AKKEGIQVSDWAVAKRIRSFPFLQKDGKFSEELYKEFLKANRLSPKVFEDKIREDLLI
EKIMAVIDKAPSVTTFELQNLYRKTFGKREFKYKLFLKKDYKPSISEKELREFYRENI
SQFKEKTGKKYFLIKIPKSQKDSEGLARKVYNLAKLGKVEKLNDFHPQQVNDKKLISE
KFKDKNFGFYSDESNYYVFFKKEGEKAKPFETVKKDIEKTLKEKKAVELAKKSAEEFL
KKGLEPKEKTKPLDRDQFFEMFKPINPQEIENIFSSKKGKRFLLVLTNGYGIFEPITD
LKVEKMEKEKIEKLKQFILDAKKQSDYQNFLNLLRQKANIKVNEKFFK"
misc_feature complement(172529..173014)
/locus_tag="Dester_0180"
/note="SurA N-terminal domain; Region: SurA_N_3;
pfam13624"
/db_xref="CDD:222271"
sig_peptide complement(172919..173014)
/locus_tag="Dester_0180"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(172088..172402)
/locus_tag="Dester_0180"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:221934"
gene 173100..174359
/locus_tag="Dester_0181"
/db_xref="GeneID:10269392"
CDS 173100..174359
/locus_tag="Dester_0181"
/note="InterPro IPR001440: IPR019734;
KEGG: saf:SULAZ_1547 tetratricopeptide repeat domain
protein;
PFAM: Tetratricopeptide TPR-1;
SMART: Tetratricopeptide repeat;
SPTR: Tetratricopeptide repeat domain protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280897.1"
/db_xref="GI:325294383"
/db_xref="GeneID:10269392"
/translation="MKKSFKESRLEVKSILKKAENLIKSKNFKKAVEELEKYKSSIRN
VDFYLLLAEAYEGLGNKEKAETYFEEARFLDTELRSKEKLKRGVSFVASKNFRAAEKE
LLESVRLNPFEKDAYLELYRLYREMGNYKGMVRALENLITIDPYSVFPYLELSRIYGI
RRQFKKAEQVLISGISVVDSPELRFELGKLYADMGKLEEAKEELSKACRMDFKNIEYR
QKLAEVMVNNEEYEDALKVVMSTLELYPDAVYVIQSAAALYDLLGKEEIAEYYYRLAI
SKSEGFVKEDAKKLFVEFLIEKGKFDQAEEILKELIESTDNVWILIDSFSELAILLID
QERFRDIAELGSFVLKNPELSEEEYCEIAEIVADALFEEGDYEEAIEYYREIINYSKD
EKLIKRAYNKLKEVEEIESLERMLKLS"
misc_feature 173136..173432
/locus_tag="Dester_0181"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:243034"
misc_feature order(173136..173141,173145..173150,173157..173162,
173244..173249,173253..173258,173265..173270,
173349..173354,173361..173366,173373..173378)
/locus_tag="Dester_0181"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature 173145..173312
/locus_tag="Dester_0181"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:222123"
misc_feature order(173154..173156,173190..173192,173202..173204,
173211..173213,173253..173255,173289..173291,
173301..173303,173310..173312,173358..173360,
173394..173396,173406..173408,173415..173417)
/locus_tag="Dester_0181"
/note="TPR motif; other site"
/db_xref="CDD:238112"
misc_feature 173349..173630
/locus_tag="Dester_0181"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:238112"
misc_feature order(173349..173354,173361..173366,173451..173456,
173460..173465,173472..173477,173553..173558,
173565..173570,173577..173582)
/locus_tag="Dester_0181"
/note="binding surface"
/db_xref="CDD:238112"
misc_feature 173349..173540
/locus_tag="Dester_0181"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:222123"
misc_feature order(173358..173360,173394..173396,173406..173408,
173415..173417,173460..173462,173496..173498,
173508..173510,173517..173519,173562..173564,
173598..173600,173610..173612,173619..173621)
/locus_tag="Dester_0181"
/note="TPR motif; other site"
/db_xref="CDD:238112"
gene 174443..174712
/locus_tag="Dester_0182"
/db_xref="GeneID:10269393"
CDS 174443..174712
/locus_tag="Dester_0182"
/note="COGs: COG0184 ribosomal protein S15P/S13E;
InterPro IPR000589: IPR005290;
KEGG: chy:CHY_1760 30S ribosomal protein S15;
PFAM: ribosomal protein S15;
SPTR: 30S ribosomal protein S15;
TIGRFAM: ribosomal protein S15, bacterial-type;
PFAM: ribosomal protein S15;
TIGRFAM: ribosomal protein S15, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_004280898.1"
/db_xref="GI:325294384"
/db_xref="GeneID:10269393"
/translation="MPVDKDIKQEIVKKYGFHEKDTGSPEVQIAILTERIRNLTEHFK
VHKHDNNNKRALQRLVGRRKKLLRYLREKDFNRYQNIVLKLGLRK"
misc_feature 174464..174700
/locus_tag="Dester_0182"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:238213"
misc_feature order(174464..174466,174515..174517,174524..174526,
174545..174547,174557..174559,174566..174568,
174578..174580,174584..174589,174593..174598,
174635..174637,174647..174649)
/locus_tag="Dester_0182"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(174530..174532,174539..174544,174551..174553,
174560..174562,174680..174682,174692..174694)
/locus_tag="Dester_0182"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:238213"
misc_feature order(174620..174622,174632..174634,174695..174700)
/locus_tag="Dester_0182"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:238213"
gene 174847..176985
/locus_tag="Dester_0183"
/db_xref="GeneID:10269394"
CDS 174847..176985
/locus_tag="Dester_0183"
/EC_number="2.7.7.8"
/note="COGs: COG1185 polyribonucleotide
nucleotidyltransferase (polynucleotide phosphorylase);
HAMAP: polyribonucleotide nucleotidyltransferase;
InterPro IPR001247: IPR015847: IPR015848: IPR018111: IPR
003029: IPR012162: IPR004087;
KEGG: pmx:PERMA_0242 polynucleotide
phosphorylase/polyadenylase;
PFAM: Exoribonuclease, phosphorolytic domain 1;
Exoribonuclease, phosphorolytic domain 2; polynucleotide
phosphorylase, phosphorolytic RNA-binding,
bacterial/organelle-type; K Homology, type 1, subgroup;
ribosomal protein S1, RNA binding domain;
PRIAM: polyribonucleotide nucleotidyltransferase;
SPTR: polyribonucleotide nucleotidyltransferase;
TIGRFAM: polyribonucleotide nucleotidyltransferase;
PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease
family, domain 1; 3' exoribonuclease family, domain 2;
polyribonucleotide nucleotidyltransferase, RNA binding
domain;
TIGRFAM: polyribonucleotide nucleotidyltransferase"
/codon_start=1
/transl_table=11
/product="polyribonucleotide nucleotidyltransferase"
/protein_id="YP_004280899.1"
/db_xref="GI:325294385"
/db_xref="GeneID:10269394"
/translation="MSISEVAVEVGGRPLRFQTGKLAKQADGAVIVSQGDTMVLVTAV
MSDEPREGIDFFPLLVEYRERAYAAGKIPGGFVKREGKPTDEEVLKSRVIDRSIRPIF
PKGFRNDVQVVAFVISADQENDPAVLAINGASAALHISRIPFEKPVGAVRVVRVNGKL
VVNPSYEQQQNADINLVVSGTEDAVVMVEGGAKEVPEEEILDAIELAHEEIKKSIRAQ
QELRDLAGKEKYEFIAPSLDEETKAKIEKWVFERIEPVITISDKHERREKLRELRELM
FIELNIPEEEQSLAKEAFAEAEKKFVRQLVLERGIRIDGRKPNEIRPITIEVGLLPRV
HGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQKRFMLHYNFPPFCVGEVAPLRG
PGRREIGHGALAERALAPVIPEEDEFPYVIRVVSDILESNGSSSMATVCGGSLSLMDA
GVPIKAQVAGIAMGLILEGDKFVVLSDILGDEDHLGDMDFKVAGTRKGVTAIQMDLKV
KGISRDILMTALKQAREGRMYILDKMDAVISSPREGISPYAPRIVSTKIDPEKTRDLI
GPSGKTIKAIIDKAGVKITIKEDGTVLVSAPSEDAAAQAIKMIEDVTKDLEIGNTYLG
KVTRVENYGAFVELAPGKIGLIHISKLPPEMRENIFESIKVSDIIPVKIIEFDQMGRP
KLSRIDVTPEEERKLREHGGFYAEPEKNNE"
misc_feature 174847..176913
/locus_tag="Dester_0183"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:236995"
misc_feature 174868..175542
/locus_tag="Dester_0183"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature order(174892..174894,174898..174900,174907..174909,
174937..174939,174943..174945,174949..174951,
174958..174960)
/locus_tag="Dester_0183"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature order(174907..174924,174937..174939,174964..174966,
174970..174972,174976..174978,174982..174984,
175027..175029,175033..175035,175039..175050,
175054..175065,175072..175086,175096..175098,
175171..175173,175177..175179,175183..175185,
175195..175209)
/locus_tag="Dester_0183"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature 175804..176469
/locus_tag="Dester_0183"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature order(175804..175833,175840..175842,176419..176421,
176431..176433,176443..176445,176455..176460)
/locus_tag="Dester_0183"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature order(175819..175821,175825..175827,175837..175851,
175873..175878,175888..175890,175894..175896,
175900..175908,175918..175926,175972..175974,
175978..175980,175987..175998,176002..176010,
176017..176019,176023..176025,176113..176115,
176119..176121,176125..176127,176131..176139)
/locus_tag="Dester_0183"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature order(175975..175977,175981..175983,176032..176034,
176044..176046,176146..176154,176293..176295,
176311..176313,176317..176319,176353..176355,
176359..176361)
/locus_tag="Dester_0183"
/note="active site"
/db_xref="CDD:206769"
misc_feature 176494..176676
/locus_tag="Dester_0183"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:239086"
misc_feature order(176524..176526,176530..176538,176542..176556,
176563..176568,176575..176580,176593..176604)
/locus_tag="Dester_0183"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:239086"
misc_feature 176545..176556
/locus_tag="Dester_0183"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239086"
misc_feature 176701..176904
/locus_tag="Dester_0183"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:239918"
misc_feature order(176725..176727,176749..176751,176779..176781,
176785..176787)
/locus_tag="Dester_0183"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239918"
misc_feature 176842..176847
/locus_tag="Dester_0183"
/note="domain interface; other site"
/db_xref="CDD:239918"
gene 176978..177832
/locus_tag="Dester_0184"
/db_xref="GeneID:10269395"
CDS 176978..177832
/locus_tag="Dester_0184"
/note="COGs: COG0756 dUTPase;
InterPro IPR008180;
KEGG: tva:TVAG_379830 deoxyuridine 5'-triphosphate
nucleotidohydrolase;
PFAM: deoxyUTP pyrophosphatase domain;
SPTR: deoxyuridine 5'-triphosphate nucleotidohydrolase
family;
PFAM: dUTPase;
TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase
(dut)"
/codon_start=1
/transl_table=11
/product="dUTP pyrophosphatase"
/protein_id="YP_004280900.1"
/db_xref="GI:325294386"
/db_xref="GeneID:10269395"
/translation="MSNWAAGWIYARGLNIEFSDRFLDVAVKIYNYFGGKLERRENSF
FLSLPFYPEVNSIDLSFIRGVFESSGSWGSKTVFIPFIEKFKKEMTSLLSNFSPTFTQ
EGIFITGENADLFVHSLYDEDTEDRSEFFFERYLSILTGEAWERKFFKVSLEEGALPP
YKKRISDSGWDLHLIKLIKKEGNLYFFDTGVRVAPPPGFYFDLVPRSSIYKSGFILAN
SVGIIDMTYRGTIKVPLIKVDASKPDPELPWRAVQLIPRKFFPIEIELTTSLDKTIRG
EGGFGSTG"
misc_feature 177479..>177685
/locus_tag="Dester_0184"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature order(177479..177484,177509..177511,177524..177529,
177533..177535,177581..177583,177587..177604,
177617..177625,177641..177643,177650..177652,
177671..177673,177677..177679,177683..177685)
/locus_tag="Dester_0184"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(177593..177601,177641..177649,177656..177658,
177668..177673)
/locus_tag="Dester_0184"
/note="active site"
/db_xref="CDD:143638"
gene 177842..178549
/locus_tag="Dester_0185"
/db_xref="GeneID:10269396"
CDS 177842..178549
/locus_tag="Dester_0185"
/note="COGs: COG0705 membrane protein;
InterPro IPR002610;
KEGG: aae:aq_1327 hypothetical protein;
PFAM: peptidase S54, rhomboid;
SPTR: uncharacterized protein;
PFAM: Rhomboid family"
/codon_start=1
/transl_table=11
/product="rhomboid family protein"
/protein_id="YP_004280901.1"
/db_xref="GI:325294387"
/db_xref="GeneID:10269396"
/translation="MIPIKDINPSSSTPIVTVSIIIICVLVFIYELFLGPYNEIFIRM
FGVVPYEITHGVDVPPPNPLTPYGNLISYQYLHGGFLHIIGNMLFLWVFGDNVEDYFG
RLKYFLFYTLCGIIAALIQVSVYPEATIPLIGASGSISGVLGAYMLLFPRAKIVTLIF
IFIFISIVVIPAAIWIAIWFFIQFTSALISMDSLSMGGVAWFAHVGGFLAGIILTILF
GPRKGRKREREIFGLKY"
misc_feature 177911..178519
/locus_tag="Dester_0185"
/note="Membrane associated serine protease [Amino acid
transport and metabolism]; Region: COG0705"
/db_xref="CDD:223777"
gene 178605..180152
/locus_tag="Dester_0186"
/db_xref="GeneID:10269397"
CDS 178605..180152
/locus_tag="Dester_0186"
/EC_number="2.3.3.13"
/note="COGs: COG0119
Isopropylmalate/homocitrate/citramalate synthase;
InterPro IPR000891: IPR013709: IPR005671;
KEGG: aae:aq_2090 2-isopropylmalate synthase;
PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate
synthase LeuA, allosteric (dimerisation) domain;
PRIAM: 2-isopropylmalate synthase;
SPTR: 2-isopropylmalate synthase;
TIGRFAM: Bacterial 2-isopropylmalate synthase;
PFAM: HMGL-like; LeuA allosteric (dimerisation) domain;
TIGRFAM: 2-isopropylmalate synthase, bacterial type"
/codon_start=1
/transl_table=11
/product="2-isopropylmalate synthase"
/protein_id="YP_004280902.1"
/db_xref="GI:325294388"
/db_xref="GeneID:10269397"
/translation="MTREKLYIFDTTLRDGEQTAGVNLTIEEKVQIAKQLERLGVDVI
EAGFAISSPADFEAIQQIAKEVKNSAVCSLARAVEADIKAAWEALKEAKKPRIHTFIA
TSDIHLKYKLKMSKEEALKRAVSAVKLIQDISEGKAEVEFSAEDAGRTDLKYLYEILE
AVIEAGAKVVNIPDTVGYAVPDEWYEKILSIKENVPNIDKAIISVHCHNDLGLATANS
LMAVKAGARQVECTVNGIGERAGNAAMEEIVMAINVRPDQFSVYTDIDTTQIYRTSQL
VSRLTGMMIARNKPIVGENAFAHESGIHQHGVLAKRETYEIMKPEDIGLKESKIVLGK
HSGRHAFKKKLEEMGILLPEEKVEEAFRRFKELASRKKEIYDIDIELIVEGLEGEKER
KFELIYNQAVSGEGIIPSATVKIKTPEGEKLGLAVGNGPVDATYRAIKNALGYDKEIK
LKDFKIRALTAGTDALAEVFLTIESEGIKVSGRGVDPDIVRASALAFLEVLDRLERRK
YRKKPLE"
misc_feature 178614..180149
/locus_tag="Dester_0186"
/note="2-isopropylmalate synthase; Validated; Region:
PRK00915"
/db_xref="CDD:234864"
misc_feature 178626..179441
/locus_tag="Dester_0186"
/note="2-isopropylmalate synthase (IPMS), N-terminal
catalytic TIM barrel domain; Region: DRE_TIM_IPMS;
cd07940"
/db_xref="CDD:163678"
misc_feature order(178644..178649,178656..178658,178737..178739,
178830..178832,178896..178898,179031..179033,
179037..179039,179121..179123,179127..179129,
179220..179222,179226..179228)
/locus_tag="Dester_0186"
/note="active site"
/db_xref="CDD:163678"
misc_feature order(178644..178649,178737..178739)
/locus_tag="Dester_0186"
/note="catalytic residues [active]"
/db_xref="CDD:163678"
misc_feature order(179220..179222,179226..179228)
/locus_tag="Dester_0186"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163678"
misc_feature 179721..180116
/locus_tag="Dester_0186"
/note="LeuA allosteric (dimerisation) domain; Region:
LeuA_dimer; pfam08502"
/db_xref="CDD:219870"
gene 180173..181480
/locus_tag="Dester_0187"
/db_xref="GeneID:10269398"
CDS 180173..181480
/locus_tag="Dester_0187"
/note="COGs: COG3547 transposase and inactivated
derivatives;
InterPro IPR003346;
KEGG: llo:LLO_2911 transposase;
PFAM: transposase, IS116/IS110/IS902;
SPTR: transposase;
PFAM: transposase IS116/IS110/IS902 family; transposase"
/codon_start=1
/transl_table=11
/product="transposase IS116/IS110/IS902 family protein"
/protein_id="YP_004280903.1"
/db_xref="GI:325294389"
/db_xref="GeneID:10269398"
/translation="MSPPEIRDYSKEATFKGRRLDFSLGNKPRAWRLADASCRLIIVA
GSAVLEYGNSSEAEVAKHKTYQGVEMKEKVEKTLYVGVDYHKNSFTAAYLDCLTGILN
TKKYEAEELEKFKNHLTTFRKKGYSVKVAVETLTGVTFFTEEIRNCVDEITYVNTNKF
KNILKGVNSAKNDRIDAETIAIYYEMGLLPTVYVPTRKEKELRIKMKERDSFVDMRKG
VINRLHSLLLEYGIKTNKRELTTKKGMERIKEETKKKVPPSLRETIWRQIETIEYLTD
KIRETEEDIKSFIGEDEELKGKVELLKSIPGVGDIVAIAFISAVCNEERFENGDKVAA
YFGLVPRANSSGDEVRNGRITKKGDSRTRNKIIQATRALLNSKLDNSVKRFYEGLVKK
GLEKKKALIAAARKLVKVMFAVLRERRQFMDFVENKCNLCVGG"
misc_feature 180407..180838
/locus_tag="Dester_0187"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:216564"
misc_feature <180635..181333
/locus_tag="Dester_0187"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature 181067..181333
/locus_tag="Dester_0187"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene 181502..181930
/locus_tag="Dester_0188"
/db_xref="GeneID:10269399"
CDS 181502..181930
/locus_tag="Dester_0188"
/note="KEGG: pjd:Pjdr2_5607 histidine kinase;
SPTR: histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_004280904.1"
/db_xref="GI:325294390"
/db_xref="GeneID:10269399"
/translation="MKINFLRKFFLSDLPIRVSYPLRMGIFYYTTALIFLVASYVIIT
ESIHNSELAKEVFFKLLVAILAVGAVFFIITYMYAKISAEDYKKVEQFAEEISKGNFD
YKVELSPIADVDLIRIYQRLEKLRASLILSRELLKRKKTK"
gene 182031..182411
/locus_tag="Dester_0189"
/db_xref="GeneID:10269400"
CDS 182031..182411
/locus_tag="Dester_0189"
/note="COGs: COG0048 ribosomal protein S12;
InterPro IPR006032: IPR005679;
KEGG: pmx:PERMA_1191 ribosomal protein S12;
PFAM: ribosomal protein S12/S23;
SPTR: 30S ribosomal protein S12;
TIGRFAM: ribosomal protein S12, bacterial-type;
PFAM: ribosomal protein S12;
TIGRFAM: ribosomal protein S12, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_004280905.1"
/db_xref="GI:325294391"
/db_xref="GeneID:10269400"
/translation="MPTINQLVRKGREKKVKRSKAPALQGNPQKRGVCVRVFTTTPKK
PNSALRKVARVRLSNGIEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYKIIRGAL
DAAGVEGRKQSRSKYGTKRPKEKK"
misc_feature 182037..182360
/locus_tag="Dester_0189"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:239466"
misc_feature order(182040..182045,182049..182054,182061..182066)
/locus_tag="Dester_0189"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:239466"
misc_feature 182040..182042
/locus_tag="Dester_0189"
/note="S8 interaction site; other site"
/db_xref="CDD:239466"
misc_feature order(182064..182072,182106..182108,182112..182117,
182121..182123,182166..182171,182175..182183,
182202..182204,182226..182228,182235..182240,
182277..182282,182292..182297,182358..182360)
/locus_tag="Dester_0189"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(182157..182162,182292..182294)
/locus_tag="Dester_0189"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:239466"
misc_feature 182160..182165
/locus_tag="Dester_0189"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:239466"
misc_feature order(182163..182180,182238..182264)
/locus_tag="Dester_0189"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:239466"
gene 182428..182898
/locus_tag="Dester_0190"
/db_xref="GeneID:10269401"
CDS 182428..182898
/locus_tag="Dester_0190"
/note="COGs: COG0049 ribosomal protein S7;
InterPro IPR000235: IPR005717;
KEGG: adg:Adeg_1528 ribosomal protein S7;
PFAM: ribosomal protein S7;
SPTR: 30S ribosomal protein S7;
TIGRFAM: ribosomal protein S7, bacterial-type;
PFAM: ribosomal protein S7p/S5e;
TIGRFAM: ribosomal protein S7, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_004280906.1"
/db_xref="GI:325294392"
/db_xref="GeneID:10269401"
/translation="MPRKGPVPPREILPDPVYGDKLVAKLINKVMKDGKKSKAEKIVY
GAFDIIKEKLGEDPLAVFHKAVENVKPIMEVRPRRVGGATYQVPMEVRPERQIHLALK
WIVDAARARSERGMVNKLANELIDAYNERGGAFKKKEDTHKMAEANKAFAHYRW"
misc_feature 182428..182895
/locus_tag="Dester_0190"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:235398"
gene 182923..185022
/locus_tag="Dester_0191"
/db_xref="GeneID:10269402"
CDS 182923..185022
/locus_tag="Dester_0191"
/note="COGs: COG0480 translation elongation factors
(GTPase);
InterPro IPR000795: IPR004161: IPR005517: IPR000640: IPR
004540: IPR005225;
KEGG: ddf:DEFDS_1775 translation elongation factor G;
PFAM: Protein synthesis factor, GTP-binding; translation
elongation factor EFTu/EF1A, domain 2; translation
elongation factor EFG/EF2, domain IV; translation
elongation factor EFG/EF2, C-terminal;
SPTR: translation elongation factor G;
TIGRFAM: translation elongation factor EFG/EF2; Small
GTP-binding protein;
PFAM: Elongation factor Tu domain 2; Elongation factor G
C-terminus; Elongation factor Tu GTP binding domain;
Elongation factor G, domain IV;
TIGRFAM: translation elongation factor EF-G; small
GTP-binding protein domain"
/codon_start=1
/transl_table=11
/product="translation elongation factor G"
/protein_id="YP_004280907.1"
/db_xref="GI:325294393"
/db_xref="GeneID:10269402"
/translation="MSKQIAIKQIKVPLERVRNIGIIAHIDAGKTTTTERILYYTGRI
HKIGEVHEGAAEMDWMEQEKERGITITSATTTCFWRDHRINIVDTPGHVDFTIEVERS
LRVLDGAVTILCSVGGVQPQTETVWRQADKYGVPRIIFVNKMDRIGADFFKVVADVEE
KLGAKPVPLQIPVGAEDEFKGVVDLITMKAIIWEEETLGAKFHYEEIPEDLKDLAEEY
REKMIEALADVDEEIMMKYLEGEEISEEEIKQAIRKGTIELKFFPMLCGSAFKNKGVQ
PLLDAVVDYLPSPLDVPPIKGINPKTGEEEERPASYDEPFAALAFKILTDPYVGQLTF
IRVYSGLMESGSYVYNATRDKKERLARILRMHANKREEIPVLGAGDIAAAVGLRETYT
GDTLCDPNHPILLEAMEFPEPVISVAVEPKTKADQEKLSLALQKLAKEDPSFRVSTDH
ETGQTIISGMGELHLEIIVDRLKREFKVDVNVGRPQVAYRETIRKEVTSEGKFIKQTG
GRGQYGHVWLKIEPLEPGKGFEFYETIKGGVVPKEYIPAVEAGVREAMETGVVAGYPM
TDIKVTLFDGSYHEVDSSEMAFKIAGSIAFKEGAKKANPVLLEPIMEVEVTTPEEFMG
DVIGDLNKRRGRVQGMEARGNAQVIRALVPLAEMFGYATDLRSMTQGRATYIMKFSHY
EEVPPQVAEQIIGERTK"
misc_feature 182953..185019
/locus_tag="Dester_0191"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:234569"
misc_feature 182977..183789
/locus_tag="Dester_0191"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 182992..183015
/locus_tag="Dester_0191"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(182995..182997,183001..183003,183013..183018,
183025..183027,183034..183039,183139..183144,
183196..183201,183268..183273,183379..183381,
183391..183393)
/locus_tag="Dester_0191"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(183001..183003,183007..183018,183346..183351,
183355..183357,183724..183732)
/locus_tag="Dester_0191"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 183082..183141
/locus_tag="Dester_0191"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 183127..183129
/locus_tag="Dester_0191"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 183184..183195
/locus_tag="Dester_0191"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 183190..183246
/locus_tag="Dester_0191"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 183346..183357
/locus_tag="Dester_0191"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 183724..183732
/locus_tag="Dester_0191"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 183868..184116
/locus_tag="Dester_0191"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:239755"
misc_feature 184387..184734
/locus_tag="Dester_0191"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:238715"
misc_feature 184747..184980
/locus_tag="Dester_0191"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:239683"
gene 185152..186348
/locus_tag="Dester_0192"
/db_xref="GeneID:10269403"
CDS 185152..186348
/locus_tag="Dester_0192"
/note="COGs: COG0050 GTPase - translation elongation
factors;
InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR
005225;
KEGG: toc:Toce_2107 translation elongation factor 1A
(EF-1A/EF-Tu);
PFAM: Protein synthesis factor, GTP-binding; translation
elongation factor EFTu/EF1A, domain 2; translation
elongation factor EFTu/EF1A, C-terminal;
SPTR: translation elongation factor 1A (EF-1A/EF-Tu);
TIGRFAM: translation elongation factor EFTu/EF1A,
bacterial/organelle; Small GTP-binding protein;
PFAM: Elongation factor Tu domain 2; Elongation factor Tu
C-terminal domain; Elongation factor Tu GTP binding
domain;
TIGRFAM: small GTP-binding protein domain; translation
elongation factor TU"
/codon_start=1
/transl_table=11
/product="translation elongation factor Tu"
/protein_id="YP_004280908.1"
/db_xref="GI:325294394"
/db_xref="GeneID:10269403"
/translation="MAKQKFERTKPHKNVGTIGHVDHGKTTLTAAITHCLALQGKAQE
VAYDQIDKAPEERERGITIATAHVEYESDKYHYAHVDCPGHADYIKNMITGAAQMDGA
ILVVSAADGPMPQTREHVLLARQVNVPYIVVFLNKVDMVDDEELLELVELEVRELLNE
YDFPGDEVPVIKGSALKALECTSPDCPDCQPIYELVNALDEYVPEPVREVDKPFLMPI
EDVFSISGRGTVVTGRVERGKLTVGEEVEIVGLREEPIKTVATGIEMFRKVLDEALPG
DNVGILLRGVGKDEVERGMVVAKPGSINPHKKFKAEVYILSKEEGGRHTPFFNGYQPQ
FYFRTTDVTGKVKLPEGVEMVMPGDNVTFEVELLKPVAIEEGLRFAIREGGKTVGAGV
VTEILD"
misc_feature 185152..186345
/locus_tag="Dester_0192"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:234596"
misc_feature 185182..185769
/locus_tag="Dester_0192"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 185206..185229
/locus_tag="Dester_0192"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(185209..185211,185215..185217,185227..185232,
185239..185241,185248..185253,185263..185265,
185347..185352,185404..185409,185476..185481,
185485..185496,185503..185505,185596..185598,
185608..185610,185686..185691)
/locus_tag="Dester_0192"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(185215..185232,185290..185292,185557..185562,
185566..185568,185671..185679)
/locus_tag="Dester_0192"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 185317..185349
/locus_tag="Dester_0192"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 185335..185337
/locus_tag="Dester_0192"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 185392..185403
/locus_tag="Dester_0192"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 185398..185454
/locus_tag="Dester_0192"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 185557..185568
/locus_tag="Dester_0192"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 185671..185679
/locus_tag="Dester_0192"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 185791..186054
/locus_tag="Dester_0192"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:239668"
misc_feature 186064..186330
/locus_tag="Dester_0192"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:239678"
misc_feature order(186097..186099,186103..186111,186163..186165,
186283..186291,186319..186321)
/locus_tag="Dester_0192"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:239678"
gene 186363..186674
/locus_tag="Dester_0193"
/db_xref="GeneID:10269404"
CDS 186363..186674
/locus_tag="Dester_0193"
/note="COGs: COG0051 ribosomal protein S10;
HAMAP: ribosomal protein S10 subgroup;
InterPro IPR001848: IPR005731;
KEGG: pmx:PERMA_1195 30S ribosomal protein S10;
PFAM: ribosomal protein S10;
SPTR: 30S ribosomal protein S10;
TIGRFAM: ribosomal protein S10 subgroup;
PFAM: ribosomal protein S10p/S20e;
TIGRFAM: ribosomal protein S10, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="YP_004280909.1"
/db_xref="GI:325294395"
/db_xref="GeneID:10269404"
/translation="MAQDRIRIKLTAYDHRLLDRSVQEIIDTVKRTGAIVAGPIPLPT
KRSVWSVIRSPHKYKYSQEQFEIRKHRRLLDIKNPKPQTVEALMDLKLPAGVDVEIKL
D"
misc_feature 186363..186668
/locus_tag="Dester_0193"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 186686..187309
/locus_tag="Dester_0194"
/db_xref="GeneID:10269405"
CDS 186686..187309
/locus_tag="Dester_0194"
/note="COGs: COG0087 ribosomal protein L3;
InterPro IPR000597: IPR019927;
KEGG: ddf:DEFDS_1772 50S ribosomal protein L3;
PFAM: ribosomal protein L3;
SPTR: 50S ribosomal protein L3;
TIGRFAM: ribosomal protein L3, bacterial/organelle-type;
PFAM: ribosomal protein L3;
TIGRFAM: 50S ribosomal protein L3, bacterial"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="YP_004280910.1"
/db_xref="GI:325294396"
/db_xref="GeneID:10269405"
/translation="MKGILGRKVGMTQIFTEDGKAIAVTVIEAGPCTVVQKRTPERDG
YSALQLGFMEKNKHESKFPKPLLGHFKKAGIKPTRWLKEVKFDNIDQYNVGDKITVEI
FQPGEKVDITGTSKGRGFAGYHKRHGFGGGRKSHGSDFHEGPGSIGACAFPGRVHKGK
RMAGHYGNETVTIRNLEIVDVIPEKNLILVKGSVPGHKGGLVIVKGK"
misc_feature 186686..187300
/locus_tag="Dester_0194"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:234564"
gene 187320..187946
/locus_tag="Dester_0195"
/db_xref="GeneID:10269406"
CDS 187320..187946
/locus_tag="Dester_0195"
/note="COGs: COG0088 ribosomal protein L4;
InterPro IPR002136;
KEGG: pmx:PERMA_1197 ribosomal protein, L4/L1 family;
PFAM: ribosomal protein L4/L1e;
SPTR: 50S ribosomal protein L4;
PFAM: ribosomal protein L4/L1 family"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="YP_004280911.1"
/db_xref="GI:325294397"
/db_xref="GeneID:10269406"
/translation="MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRR
RGTHSTKTRGEVRGGGKKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPK
KVRKVALRSVVAGRLQEGNLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVVPELE
ENTYKSFRNLPNVKLLEIEGLNVYDMLCYDKCIFFKSTLPKLEERLSL"
misc_feature 187320..187940
/locus_tag="Dester_0195"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:235404"
gene 187943..188266
/locus_tag="Dester_0196"
/db_xref="GeneID:10269407"
CDS 187943..188266
/locus_tag="Dester_0196"
/note="COGs: COG0089 ribosomal protein L23;
InterPro IPR013025;
KEGG: saf:SULAZ_1754 50S ribosomal protein L23;
PFAM: ribosomal protein L25/L23;
SPTR: ribosomal protein L23;
PFAM: ribosomal protein L23"
/codon_start=1
/transl_table=11
/product="ribosomal protein L25/L23"
/protein_id="YP_004280912.1"
/db_xref="GI:325294398"
/db_xref="GeneID:10269407"
/translation="MRTPYDIILRPVITEKSVKLANLEAKSSKTKETKKITKITFEVA
MDATKPEIKEAVEKIFGVKVEKVNTMIVKGKRKGIRFLRGKKKDWKKAVVTLKPGYEI
DLEKL"
misc_feature 187955..188254
/locus_tag="Dester_0196"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:235586"
gene 188282..189106
/locus_tag="Dester_0197"
/db_xref="GeneID:10269408"
CDS 188282..189106
/locus_tag="Dester_0197"
/note="COGs: COG0090 ribosomal protein L2;
InterPro IPR002171: IPR005880;
KEGG: pmx:PERMA_1199 50S ribosomal protein L2;
PFAM: ribosomal protein L2;
SPTR: 50S ribosomal protein L2;
TIGRFAM: ribosomal protein L2, bacterial-type;
PFAM: ribosomal Proteins L2, RNA binding domain; ribosomal
Proteins L2, C-terminal domain;
TIGRFAM: ribosomal protein L2, bacterial/organellar"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="YP_004280913.1"
/db_xref="GI:325294399"
/db_xref="GeneID:10269408"
/translation="MGIKKFKPYTPSRRFMTVSDFSEITKTEPEKSLTVGFVRGTGRN
NQGKITCRHKGGGHKRRYRIIDFRRDKIGIPAKVAAIEYDPNRSARIALLVYADGEKR
YILWPDGLKVGDTVIAGPDAEIKVGNALPLRNIPVGTIVHNVELKPGKGGQLARAAGS
FAQLMGKVGDYAQLRLPSGELRLVHLDCMATVGQVGNLDHENIVIGKAGRSRWLGIRP
TVRGTAMNPVDHPHGGGEGRTFGKHPVTPWGQPTKGYKTRRAKKYSDKFIIKRRTK"
misc_feature 188282..189103
/locus_tag="Dester_0197"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:236488"
misc_feature 188405..188635
/locus_tag="Dester_0197"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 188651..189034
/locus_tag="Dester_0197"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 189116..189400
/locus_tag="Dester_0198"
/db_xref="GeneID:10269409"
CDS 189116..189400
/locus_tag="Dester_0198"
/note="COGs: COG0185 ribosomal protein S19;
InterPro IPR002222: IPR005732;
KEGG: sul:SYO3AOP1_0287 30S ribosomal protein S19;
PFAM: ribosomal protein S19/S15;
SPTR: ribosomal protein S19;
TIGRFAM: ribosomal protein S19, bacterial-type;
PFAM: ribosomal protein S19;
TIGRFAM: ribosomal protein S19, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="YP_004280914.1"
/db_xref="GI:325294400"
/db_xref="GeneID:10269409"
/translation="MGRSLKKGPYVNPKILKKVRKMNETGEKKVIKVWDRACTIVPEF
IGHTFAVYNGQKFIPVYVTEQMVGHKLGEFSLTRTFRGHAGQKQKVAKKK"
misc_feature 189116..189391
/locus_tag="Dester_0198"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 189414..189809
/locus_tag="Dester_0199"
/db_xref="GeneID:10269410"
CDS 189414..189809
/locus_tag="Dester_0199"
/note="COGs: COG0091 ribosomal protein L22;
InterPro IPR001063: IPR005727;
KEGG: adg:Adeg_1519 ribosomal protein L22;
PFAM: ribosomal protein L22/L17;
SPTR: 50S ribosomal protein L22;
TIGRFAM: ribosomal protein L22, bacterial-type;
PFAM: ribosomal protein L22p/L17e;
TIGRFAM: ribosomal protein L22, bacterial type"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="YP_004280915.1"
/db_xref="GI:325294401"
/db_xref="GeneID:10269410"
/translation="MAVEQREYYQQGERGFAAPEEARAIWRRARMSASKVRLVVDLIR
GKQVDQALATLANSPKKAARMVEKVLKSAIANAEQKGLDPEELIVKRAYVDEGPTMKR
VRPRAMGRANIIRKRTCHITVVVGKPESK"
misc_feature 189477..189788
/locus_tag="Dester_0199"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:238205"
misc_feature order(189477..189482,189546..189554,189558..189563,
189567..189572,189633..189650,189672..189689,
189783..189788)
/locus_tag="Dester_0199"
/note="putative translocon binding site; other site"
/db_xref="CDD:238205"
misc_feature order(189486..189488,189492..189494,189501..189503,
189507..189515,189522..189524,189534..189536,
189543..189545,189627..189629,189639..189641,
189648..189650,189684..189686,189690..189698,
189702..189704,189711..189713,189747..189764)
/locus_tag="Dester_0199"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238205"
gene 189822..190520
/locus_tag="Dester_0200"
/db_xref="GeneID:10269411"
CDS 189822..190520
/locus_tag="Dester_0200"
/note="COGs: COG0092 ribosomal protein S3;
InterPro IPR008282: IPR004044: IPR001351: IPR005704;
KEGG: pmx:PERMA_1202 ribosomal protein S3;
PFAM: ribosomal protein S3, C-terminal; ribosomal protein
S3, N-terminal; K Homology, type 2;
SPTR: 30S ribosomal protein S3;
TIGRFAM: ribosomal protein S3, bacterial;
PFAM: KH domain; ribosomal protein S3, C-terminal domain;
ribosomal protein S3, N-terminal domain;
TIGRFAM: ribosomal protein S3, bacterial type; ribosomal
protein S3, eukaryotic/archaeal type"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="YP_004280916.1"
/db_xref="GI:325294402"
/db_xref="GeneID:10269411"
/translation="MGQKVHPIGFRLGITKDWEAKWVVKEKGKYVKFLHEDLKIRDLI
KKKYYHAGIARIDIERTLDRINIRIWAARPGLLIARKGAEVKALRKYLEELTGKSVYI
NIEEVKYPQLNAQLVAENVAQQLERRVAFRRAMKRVIADAMKAGAKGIKVQCAGRLGG
ADMARTEWYREGRVPLQTIRADIDYGTAIAKTKYGVIGVKVWIYKGDVYKDETEEILK
KIEKEVKQEMARGE"
misc_feature 189822..190448
/locus_tag="Dester_0200"
/note="ribosomal protein S3, bacterial type; Region:
rpsC_bact; TIGR01009"
/db_xref="CDD:130082"
misc_feature 189825..190151
/locus_tag="Dester_0200"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:239095"
misc_feature 190056..190067
/locus_tag="Dester_0200"
/note="G-X-X-G motif; other site"
/db_xref="CDD:239095"
misc_feature 190179..190430
/locus_tag="Dester_0200"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:215779"
gene 190523..190951
/locus_tag="Dester_0201"
/db_xref="GeneID:10269412"
CDS 190523..190951
/locus_tag="Dester_0201"
/note="COGs: COG0197 ribosomal protein L16/L10E;
HAMAP: ribosomal protein L16;
InterPro IPR016180: IPR000114;
KEGG: cob:COB47_0846 ribosomal protein L16;
PFAM: ribosomal protein L10e/L16;
SPTR: ribosomal protein L16;
TIGRFAM: ribosomal protein L16;
PFAM: ribosomal protein L16p/L10e;
TIGRFAM: ribosomal protein L16, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="YP_004280917.1"
/db_xref="GI:325294403"
/db_xref="GeneID:10269412"
/translation="MLMPKRTKFRKQQRGRLKGKSYRGNKLAFGDYGIQALEPGYITT
NQIEAARVAMTRTMKRGGKVWIRIFPDKPYTKKPLETRMGKGKGNVETWVAKVLPGRI
MFEVAGVGEEVALEALRLAVHKLPIKCRIVKREETPKGEE"
misc_feature 190589..190918
/locus_tag="Dester_0201"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:238714"
misc_feature order(190589..190591,190595..190600,190607..190609,
190655..190660,190667..190669,190676..190678,
190688..190690,190697..190699,190715..190723,
190727..190729,190733..190735,190745..190750,
190769..190783,190823..190825,190877..190882,
190889..190894)
/locus_tag="Dester_0201"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238714"
misc_feature 190634..190639
/locus_tag="Dester_0201"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(190670..190678,190685..190690)
/locus_tag="Dester_0201"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:238714"
misc_feature order(190697..190699,190706..190711,190715..190717,
190838..190840)
/locus_tag="Dester_0201"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
misc_feature order(190763..190768,190775..190780)
/locus_tag="Dester_0201"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:238714"
gene 190953..191153
/locus_tag="Dester_0202"
/db_xref="GeneID:10269413"
CDS 190953..191153
/locus_tag="Dester_0202"
/note="InterPro IPR001854;
KEGG: cth:Cthe_2911 50S ribosomal protein L29;
PFAM: ribosomal protein L29;
SPTR: ribosomal protein L29;
TIGRFAM: ribosomal protein L29;
PFAM: ribosomal L29 protein;
TIGRFAM: ribosomal protein L29"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="YP_004280918.1"
/db_xref="GI:325294404"
/db_xref="GeneID:10269413"
/translation="MKKYTEELRQKSTDELKKMVVELKEKLLKLRFKNAFGQLENPME
IRKTRKQIARIFTILRERGVKA"
misc_feature 190971..191138
/locus_tag="Dester_0202"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:238243"
misc_feature order(190971..190976,190980..190982,190992..190997,
191001..191006,191013..191018,191025..191030,
191037..191039,191046..191051,191073..191075,
191082..191084,191094..191096,191103..191108,
191115..191120,191127..191129)
/locus_tag="Dester_0202"
/note="putative translocon interaction site; other site"
/db_xref="CDD:238243"
misc_feature order(190977..190979,191079..191081,191109..191114,
191118..191123,191133..191135)
/locus_tag="Dester_0202"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238243"
misc_feature order(191016..191018,191028..191030,191037..191039,
191049..191051,191094..191096)
/locus_tag="Dester_0202"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:238243"
misc_feature order(191034..191036,191043..191048)
/locus_tag="Dester_0202"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:238243"
misc_feature 191055..191060
/locus_tag="Dester_0202"
/note="trigger factor interaction site; other site"
/db_xref="CDD:238243"
gene 191165..191455
/locus_tag="Dester_0203"
/db_xref="GeneID:10269414"
CDS 191165..191455
/locus_tag="Dester_0203"
/note="COGs: COG0186 ribosomal protein S17;
InterPro IPR000266: IPR019984;
KEGG: slp:Slip_2228 30S ribosomal protein S17;
PFAM: ribosomal protein S17;
SPTR: 30S ribosomal protein S17;
TIGRFAM: ribosomal protein S17, bacterial-type;
PFAM: ribosomal protein S17;
TIGRFAM: 30S ribosomal protein S17"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="YP_004280919.1"
/db_xref="GI:325294405"
/db_xref="GeneID:10269414"
/translation="MAETRVNRRKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKF
SKKYMAHDENNQCQIGDVVKIMETRPFSKRKRWRVVEIIEKAKKLGGEEVEE"
misc_feature 191216..191425
/locus_tag="Dester_0203"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:235532"
gene 191479..191847
/locus_tag="Dester_0204"
/db_xref="GeneID:10269415"
CDS 191479..191847
/locus_tag="Dester_0204"
/note="COGs: COG0093 ribosomal protein L14;
InterPro IPR000218: IPR005745;
KEGG: hth:HTH_0712 ribosomal protein L14;
PFAM: ribosomal protein L14b/L23e;
SPTR: 50S ribosomal protein L14;
TIGRFAM: ribosomal protein L14, bacterial-type;
PFAM: ribosomal protein L14p/L23e;
TIGRFAM: ribosomal protein L14, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="YP_004280920.1"
/db_xref="GI:325294406"
/db_xref="GeneID:10269415"
/translation="MIQVQTYLNVADNTGAKKVQCIRVLGGSNRRYASLGDQIVVTVK
DAIPNATAKKGEVYRAVVVRTKKEVRRPDGTYIKFDDNAVVLLNKQGEPLGTRILGPV
AREARQKGYTKIASLAPEVI"
misc_feature 191479..191844
/locus_tag="Dester_0204"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 191859..192212
/locus_tag="Dester_0205"
/db_xref="GeneID:10269416"
CDS 191859..192212
/locus_tag="Dester_0205"
/note="COGs: COG0198 ribosomal protein L24;
InterPro IPR005824: IPR003256;
KEGG: aac:Aaci_2700 50S ribosomal protein L24;
PFAM: KOW;
SMART: KOW;
SPTR: 50S ribosomal protein L24;
TIGRFAM: ribosomal protein L24;
PFAM: KOW motif;
TIGRFAM: ribosomal protein L24, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="YP_004280921.1"
/db_xref="GI:325294407"
/db_xref="GeneID:10269416"
/translation="MAKKKFKIKAGDKVVVIAGKDKGKVGKVLKVLPEEERVIVEGVR
IVKKHLRPSQKYPEGGIIEKEAPIHISNVMLICPKTGKPTRVGIKFENGKKVRYAKRS
GAVIDEISKPKKAGR"
misc_feature <191997..192179
/locus_tag="Dester_0205"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:234566"
misc_feature <191997..192083
/locus_tag="Dester_0205"
/note="KOW motif of Ribosomal Protein L26; Region:
KOW_RPL26; cd06089"
/db_xref="CDD:240513"
misc_feature order(191997..192002,192066..192071)
/locus_tag="Dester_0205"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:240513"
gene 192236..192790
/locus_tag="Dester_0206"
/db_xref="GeneID:10269417"
CDS 192236..192790
/locus_tag="Dester_0206"
/note="COGs: COG0094 ribosomal protein L5;
KEGG: pmx:PERMA_1208 50S ribosomal protein L5;
SPTR: 50S ribosomal protein L5;
PFAM: ribosomal L5P family C-terminus; ribosomal protein
L5"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="YP_004280922.1"
/db_xref="GI:325294408"
/db_xref="GeneID:10269417"
/translation="MADKYVPRLKEKYEKEVVPLLMKKFGYKNIMEVPKIEKIVVNMG
VGEAVQNIKALENAMNDLALITGQKPSVRRAKRSEAGFKLRKGMPIGAKVTLRRDRMY
EFLDRLISVALPRVRDFKGLSPKSFDGRGNYNFGLDEQTVFPEIDYDKVDKIRGMNIT
IVTTAETDEEAKALLEAFGFPFRK"
misc_feature 192251..192787
/locus_tag="Dester_0206"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 192320..192490
/locus_tag="Dester_0206"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 192500..192784
/locus_tag="Dester_0206"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 192804..192989
/locus_tag="Dester_0207"
/db_xref="GeneID:10269418"
CDS 192804..192989
/locus_tag="Dester_0207"
/note="COGs: COG0199 ribosomal protein S14;
InterPro IPR001209;
KEGG: chy:CHY_2296 30S ribosomal protein S14;
PFAM: ribosomal protein S14;
SPTR: ribosomal protein S14p/S29e;
PFAM: ribosomal protein S14p/S29e"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="YP_004280923.1"
/db_xref="GI:325294409"
/db_xref="GeneID:10269418"
/translation="MARKALIVKAQREPKFKVRKYNRCPLCGRPRGFIREFGMCRLCF
RTLALQGKIPGVKKASW"
misc_feature 192804..192986
/locus_tag="Dester_0207"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08061"
/db_xref="CDD:181216"
gene 193016..193438
/locus_tag="Dester_0208"
/db_xref="GeneID:10269419"
CDS 193016..193438
/locus_tag="Dester_0208"
/note="COGs: COG0096 ribosomal protein S8;
InterPro IPR000630;
KEGG: adg:Adeg_1510 ribosomal protein S8;
PFAM: ribosomal protein S8;
SPTR: ribosomal protein S8;
PFAM: ribosomal protein S8"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="YP_004280924.1"
/db_xref="GI:325294410"
/db_xref="GeneID:10269419"
/translation="MMMDTVADFLTRIRNANFVYHEYADAPYSKVNEAIAKILKEEGF
IKDYEIREEEFKRTKNPENKKKLIRVYLKYGPNKERVINEIKRVSKPGRRIYVGKDEI
PLVKAGLGVAILSTNKGIIPGYKARKLGVGGEVLCYVW"
misc_feature 193016..193435
/locus_tag="Dester_0208"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:234658"
gene 193461..194003
/locus_tag="Dester_0209"
/db_xref="GeneID:10269420"
CDS 193461..194003
/locus_tag="Dester_0209"
/note="COGs: COG0097 ribosomal protein L6P/L9E;
InterPro IPR020040: IPR019906;
KEGG: saf:SULAZ_1740 ribosomal protein L6;
PFAM: ribosomal protein L6, alpha-beta domain;
SPTR: 50S ribosomal protein L6;
TIGRFAM: ribosomal protein L6, bacterial-type;
PFAM: ribosomal protein L6;
TIGRFAM: ribosomal protein L6, bacterial type"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="YP_004280925.1"
/db_xref="GI:325294411"
/db_xref="GeneID:10269420"
/translation="MSRIGRMPIEIPQGVTVEVKPGNHVVVKGPKGTLEYTFNPRLTI
KVEDNKVIVERPTDEKQMRALHGTTRALINNMVIGVSKGFEKVLEVKGLGYRAFAKGK
VLELHLGFSHPVLYQIPEGIEIEVDRDNNIYVRGIDKQKVGQVAAEIRSFRPPEPYKG
KGIRYRGEKIVLKAGKSAKK"
misc_feature 193461..193997
/locus_tag="Dester_0209"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:235495"
misc_feature 193491..193709
/locus_tag="Dester_0209"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
misc_feature 193734..193955
/locus_tag="Dester_0209"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:215872"
gene 194026..194391
/locus_tag="Dester_0210"
/db_xref="GeneID:10269421"
CDS 194026..194391
/locus_tag="Dester_0210"
/note="COGs: COG0256 ribosomal protein L18;
InterPro IPR005484: IPR004389;
KEGG: ddf:DEFDS_1756 50S ribosomal protein L18;
PFAM: ribosomal protein L18/L5;
SPTR: 50S ribosomal protein L18;
TIGRFAM: ribosomal protein L18, bacterial;
PFAM: ribosomal L18p/L5e family;
TIGRFAM: ribosomal protein L18, bacterial type"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="YP_004280926.1"
/db_xref="GI:325294412"
/db_xref="GeneID:10269421"
/translation="MAKLTRRERIAKKHRRVRKKIFGTPERPRLAVYKSLKHIYAQII
DDVNGVTLAAASTLDKELRTKLSELTKTEEAREVGKLIAQRALEKGIKKVVFDRGGFI
YHGRIKALAEGAREGGLEF"
misc_feature 194077..194382
/locus_tag="Dester_0210"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:238246"
misc_feature order(194080..194082,194086..194091,194095..194097,
194110..194112,194122..194139,194143..194145,
194149..194151,194170..194178,194185..194187,
194308..194310,194341..194343)
/locus_tag="Dester_0210"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:238246"
misc_feature order(194080..194082,194089..194094)
/locus_tag="Dester_0210"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:238246"
misc_feature order(194083..194088,194311..194313,194320..194322,
194368..194370)
/locus_tag="Dester_0210"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238246"
misc_feature 194326..194328
/locus_tag="Dester_0210"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:238246"
gene 194404..194961
/locus_tag="Dester_0211"
/db_xref="GeneID:10269422"
CDS 194404..194961
/locus_tag="Dester_0211"
/note="COGs: COG0098 ribosomal protein S5;
InterPro IPR013810: IPR005324: IPR005712;
KEGG: hor:Hore_01340 ribosomal protein S5;
PFAM: ribosomal protein S5, N-terminal; ribosomal protein
S5, C-terminal;
SPTR: 30S ribosomal protein S5;
TIGRFAM: ribosomal protein S5, bacterial-type;
PFAM: ribosomal protein S5, N-terminal domain; ribosomal
protein S5, C-terminal domain;
TIGRFAM: ribosomal protein S5, bacterial/organelle type"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="YP_004280927.1"
/db_xref="GI:325294413"
/db_xref="GeneID:10269422"
/translation="MAKKVRPEGLELKERLVHINRNAKVVTGGRKFSFTAFVVVGNGN
GVVGFGRGKAAEVPDAIRKATEDAKKNLIRIPVVDGTIPFEVQAKFGGTRIIMRPAAP
GTGVIASAPVRAVLESAGVTDILTKVIGSTNPHTVVRAVLKALEQLKTPEEFAQLRGV
SVEELRRRWKLPGRKITKEGEIVRR"
misc_feature 194404..194901
/locus_tag="Dester_0211"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:234790"
misc_feature 194434..194634
/locus_tag="Dester_0211"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 194659..194880
/locus_tag="Dester_0211"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 194964..195149
/locus_tag="Dester_0212"
/db_xref="GeneID:10269423"
CDS 194964..195149
/locus_tag="Dester_0212"
/note="InterPro IPR000517: IPR005996;
KEGG: vpr:Vpar_1476 ribosomal protein L30;
PFAM: ribosomal protein L30p/L7e, conserved region;
SPTR: 50S ribosomal protein L30;
TIGRFAM: ribosomal protein L30, bacterial-type;
PFAM: ribosomal protein L30p/L7e;
TIGRFAM: ribosomal protein L30, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="YP_004280928.1"
/db_xref="GI:325294414"
/db_xref="GeneID:10269423"
/translation="MAKVKITLVRGLAGKSRKKRATLEALGLHKRGQSTVKELNPAIN
GMIEKVRELIKLEPVEE"
misc_feature 194973..195134
/locus_tag="Dester_0212"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(194991..194996,195000..195005,195009..195017,
195024..195029,195036..195044,195048..195050,
195057..195059,195072..195077,195084..195092,
195096..195101)
/locus_tag="Dester_0212"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 195151..195609
/locus_tag="Dester_0213"
/db_xref="GeneID:10269424"
CDS 195151..195609
/locus_tag="Dester_0213"
/note="COGs: COG0200 ribosomal protein L15;
InterPro IPR005749;
KEGG: tte:TTE2273 ribosomal protein L15;
SPTR: 50S ribosomal protein L15;
TIGRFAM: ribosomal protein L15, bacterial-type;
PFAM: ribosomal protein L18e/L15;
TIGRFAM: ribosomal protein L15, bacterial/organelle"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="YP_004280929.1"
/db_xref="GI:325294415"
/db_xref="GeneID:10269424"
/translation="MELKLHNLKPNEGAVKEKKRVGRGHGSGHGKTSGRGQKGQTSRS
GWKGGTRPGFEGGQTPLYMRFPKRGFSNAPFKKEYAIVNLKDINERFEEGAEITPETL
KEVGLIKKNLPVKILGDGEVTKKFTVKAHKFSKSAKEKIEAAGGICEEIA"
misc_feature 195157..195603
/locus_tag="Dester_0213"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:235523"
gene 195619..196947
/locus_tag="Dester_0214"
/db_xref="GeneID:10269425"
CDS 195619..196947
/locus_tag="Dester_0214"
/note="COGs: COG0201 Preprotein translocase subunit SecY;
InterPro IPR002208;
KEGG: gsu:GSU2837 preprotein translocase subunit SecY;
PFAM: SecY protein;
SPTR: Preprotein translocase subunit secY;
TIGRFAM: SecY protein;
PFAM: eubacterial secY protein;
TIGRFAM: preprotein translocase, SecY subunit"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecY"
/protein_id="YP_004280930.1"
/db_xref="GI:325294416"
/db_xref="GeneID:10269425"
/translation="MNLSKIFFNVTEVPELRKRFIFTMLLLAVYRLGAHIPTPGIDVI
ALSEFFKRAQGTVFGFMDVFSGGALSKLTIFALGVMPYISSAIIMQLLTVAIPSIEKL
AKEEGEYGRRKINQYTRYGAVLLAFIQALGIAIGLESMKSPSGIPVVPNPGFTFMFVC
VTCLTAGATFLMWLGEKITEKGIGNGMSILIFAGIVASIPNAAITTFTLFKNGEISLF
KIIGIISIILAMIAAIVYIQEAERRVPLQYARRNIGRQAVGKYTSYLPIKLNPANVIP
IIFAASVLMFPATIVKFIHNPIAQAIYDALQPGSTLYLIVYAVLIFFFTYFYTAIIFN
PEEIAENLNKHGGFIPGIRAGTDTAKYLDKIVSRLTFAGAVFLTLVAIVPLIITQKMQ
LPFYFGGTAILIVVGVALDTLRRMEAYALSISYEGFLGRKKKKLKLGTGG"
misc_feature 195637..196896
/locus_tag="Dester_0214"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:236412"
misc_feature 195835..196860
/locus_tag="Dester_0214"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:215869"
gene 196949..197512
/locus_tag="Dester_0215"
/db_xref="GeneID:10269426"
CDS 196949..197512
/locus_tag="Dester_0215"
/EC_number="2.7.4.3"
/note="COGs: COG0563 Adenylate kinase and related kinase;
HAMAP: Adenylate kinase;
InterPro IPR000850: IPR006259;
KEGG: lbf:LBF_1892 adenylate kinase;
PFAM: Adenylate kinase;
SPTR: Adenylate kinase;
TIGRFAM: Adenylate kinase, subfamily;
PFAM: Adenylate kinase;
TIGRFAM: adenylate kinases"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_004280931.1"
/db_xref="GI:325294417"
/db_xref="GeneID:10269426"
/translation="MLKVVFLGPPGAGKGTQAVRIAEKYNVPHISTGDILRAAVKEGT
ELGKLAKEYMDKGELVPDDVIIGIIRERLSQSDVRERGFILDGFPRTLPQAEALDKML
AELGLPLDKVVYLNVDDEEIVKRLLARGRADDTEEVIRNRLEVYRKQTAPLIDYYSEK
GILVEICGVGEIDEITKKIEESLGLNG"
misc_feature 196952..197500
/locus_tag="Dester_0215"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:234711"
misc_feature 196955..197473
/locus_tag="Dester_0215"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:238713"
misc_feature order(197042..197044,197057..197059,197126..197128,
197204..197209,197213..197218,197228..197230)
/locus_tag="Dester_0215"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:238713"
misc_feature order(197057..197059,197204..197206,197216..197218,
197333..197335,197372..197374,197384..197386)
/locus_tag="Dester_0215"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:238713"
gene 197505..198287
/locus_tag="Dester_0216"
/db_xref="GeneID:10269427"
CDS 197505..198287
/locus_tag="Dester_0216"
/EC_number="3.4.11.18"
/note="COGs: COG0024 methionine aminopeptidase;
InterPro IPR000994: IPR002467;
KEGG: dsa:Desal_1206 methionine aminopeptidase, type I;
PFAM: peptidase M24, structural domain;
PRIAM: methionyl aminopeptidase;
SPTR: methionine aminopeptidase;
TIGRFAM: peptidase M24A, methionine aminopeptidase,
subfamily 1;
PFAM: Metallopeptidase family M24;
TIGRFAM: methionine aminopeptidase, type I"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase"
/protein_id="YP_004280932.1"
/db_xref="GI:325294418"
/db_xref="GeneID:10269427"
/translation="MVKTLRKTKHGIILKTPEEIARLRTAAATTMEILLRVAEEISSG
ITALDIDRITRSLCKEYGVKPAFLGYGGFPGAICVSVNEEVVHGLPTKKKVFKEGDIV
SLDFGAVVDGWIGDVAVTVPVGKISETAQKLIDVTRESLYKGIEAAKAGGKLIDISRA
IQKYVESHGFNVTRGYAGHGIGRSLHEEPQITNYVYKGYPDITLEPGMTFAIEPMVNE
GTGKVKVKRDRWTVVTKDGKLSAHFEHDVAITEDGTIIMSAI"
misc_feature 197562..198272
/locus_tag="Dester_0216"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:238519"
misc_feature order(197763..197765,197817..197819,197850..197852,
198039..198041,198141..198143,198234..198236)
/locus_tag="Dester_0216"
/note="active site"
/db_xref="CDD:238519"
gene 198340..198558
/locus_tag="Dester_0217"
/db_xref="GeneID:10269428"
CDS 198340..198558
/locus_tag="Dester_0217"
/note="COGs: COG0361 translation initiation factor 1
(IF-1);
HAMAP: translation initiation factor IF-1;
InterPro IPR006196: IPR004368;
KEGG: slp:Slip_2213 translation initiation factor IF-1;
PFAM: S1, IF1 type;
SPTR: translation initiation factor IF-1;
TIGRFAM: translation initiation factor IF-1;
PFAM: translation initiation factor 1A / IF-1;
TIGRFAM: translation initiation factor IF-1"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-1"
/protein_id="YP_004280933.1"
/db_xref="GI:325294419"
/db_xref="GeneID:10269428"
/translation="MAKEKGIQVEGKVVEALPNAYFKVELDNGHQVLAHASGKMRVHF
IRILPGDRVVVELSPYDLTRGRIIYRKG"
misc_feature 198358..198549
/locus_tag="Dester_0217"
/note="S1_IF1: Translation Initiation Factor IF1, S1-like
RNA-binding domain. IF1 contains an S1-like RNA-binding
domain, which is found in a wide variety of RNA-associated
proteins. Translation initiation includes a number of
interrelated steps preceding the...; Region: S1_IF1;
cd04451"
/db_xref="CDD:239898"
misc_feature order(198382..198390,198406..198408,198442..198444,
198451..198456,198469..198480,198529..198531,
198535..198537)
/locus_tag="Dester_0217"
/note="rRNA binding site [nucleotide binding]; other site"
/db_xref="CDD:239898"
misc_feature order(198442..198444,198454..198456,198547..198549)
/locus_tag="Dester_0217"
/note="predicted 30S ribosome binding site; other site"
/db_xref="CDD:239898"
gene 198621..198737
/locus_tag="Dester_0218"
/db_xref="GeneID:10269429"
CDS 198621..198737
/locus_tag="Dester_0218"
/note="HAMAP: ribosomal protein L36;
InterPro IPR000473;
KEGG: dds:Ddes_0682 50S ribosomal protein L36;
PFAM: ribosomal protein L36;
SPTR: ribosomal protein L36;
TIGRFAM: ribosomal protein L36;
PFAM: ribosomal protein L36;
TIGRFAM: ribosomal protein L36, bacterial type"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="YP_004280934.1"
/db_xref="GI:325294420"
/db_xref="GeneID:10269429"
/translation="MKVRPSVKKICPKCKIIKRKGVVRVICENPKHKQRQGK"
misc_feature 198621..198731
/locus_tag="Dester_0218"
/note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
PRK00465"
/db_xref="CDD:179039"
gene 198749..199129
/locus_tag="Dester_0219"
/db_xref="GeneID:10269430"
CDS 198749..199129
/locus_tag="Dester_0219"
/note="COGs: COG0099 ribosomal protein S13;
InterPro IPR001892: IPR019980;
KEGG: tai:Taci_1158 ribosomal protein S13;
PFAM: ribosomal protein S13;
SPTR: 30S ribosomal protein S13;
TIGRFAM: ribosomal protein S13, bacterial-type;
PFAM: ribosomal protein S13/S18;
TIGRFAM: 30S ribosomal protein S13"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="YP_004280935.1"
/db_xref="GI:325294421"
/db_xref="GeneID:10269430"
/translation="MARIAGVDIPDNKKVPYSLAYIYGIGIKTGFKICEEAGIDPEKR
VKDLTEEEIAKIRKIIETEYKVEGDLRKEIAMNIKRLMEIGCYRGIRHRLGLPVRGQR
TRTNARTRKGPRKTVAGKKKAPKK"
misc_feature 198749..199090
/locus_tag="Dester_0219"
/note="30S ribosomal protein S13; Validated; Region: rpsM;
PRK05179"
/db_xref="CDD:235358"
misc_feature 198755..199090
/locus_tag="Dester_0219"
/note="30S ribosomal protein S13; Region: bact_S13;
TIGR03631"
/db_xref="CDD:213840"
gene 199149..199541
/locus_tag="Dester_0220"
/db_xref="GeneID:10269431"
CDS 199149..199541
/locus_tag="Dester_0220"
/note="COGs: COG0100 ribosomal protein S11;
InterPro IPR001971: IPR019981;
KEGG: pmx:PERMA_1222 30S ribosomal protein S11;
PFAM: ribosomal protein S11;
SPTR: 30S ribosomal protein S11;
TIGRFAM: ribosomal protein S11, bacterial-type;
PFAM: ribosomal protein S11;
TIGRFAM: 30S ribosomal protein S11"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="YP_004280936.1"
/db_xref="GI:325294422"
/db_xref="GeneID:10269431"
/translation="MARARRNVKKKQKRTVGFAIAHIQTTFNNTIITFTDKEGNTLVW
ESGGTVGFKGTRKSTPYAAQLAATKAAERAMKEYGVKDVEIRIKGNGGGRETAIKAIA
AVGLNVKAIKDVTPIPHDGCRPPKRRRV"
misc_feature 199152..199538
/locus_tag="Dester_0220"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 199554..200180
/locus_tag="Dester_0221"
/db_xref="GeneID:10269432"
CDS 199554..200180
/locus_tag="Dester_0221"
/note="COGs: COG0522 ribosomal protein S4 and related
protein;
InterPro IPR001912: IPR002942: IPR005709;
KEGG: nam:NAMH_1696 30S ribosomal protein S4;
PFAM: RNA-binding S4; ribosomal protein S4;
SMART: RNA-binding S4;
SPTR: 30S ribosomal protein S4;
TIGRFAM: ribosomal protein S4, bacterial-type;
PFAM: ribosomal protein S4/S9 N-terminal domain; S4
domain;
TIGRFAM: ribosomal protein S4, bacterial/organelle type"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="YP_004280937.1"
/db_xref="GI:325294423"
/db_xref="GeneID:10269432"
/translation="MGRYTGPKWRIARRLGVNIYVGEEKSQKGKSILDRRPYPPGQHG
RSRRKISYYGRQLMEKQKVKYYYGIREGQFKRFYEMAERMRGQTGENLLKLLESRLDN
VVYRLGFGKSHRHARQLVVHGHILVNGKKVDRPSYLVKPGDIVEVKEKSREIPQIKEG
IELAQRRGIPSWLELDAENFKGVVKAEPTREEIEIPVEEHLIVELYSK"
misc_feature 199554..200177
/locus_tag="Dester_0221"
/note="30S ribosomal protein S4; Validated; Region: rpsD;
PRK05327"
/db_xref="CDD:235411"
misc_feature 199560..199844
/locus_tag="Dester_0221"
/note="Ribosomal protein S4/S9 N-terminal domain; Region:
Ribosomal_S4; pfam00163"
/db_xref="CDD:215762"
misc_feature 199848..200030
/locus_tag="Dester_0221"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:238095"
misc_feature order(199848..199850,199884..199889,199893..199898,
199902..199907,199914..199919,199923..199925,
199944..199967,199971..199973)
/locus_tag="Dester_0221"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:238095"
gene 200208..201164
/locus_tag="Dester_0222"
/db_xref="GeneID:10269433"
CDS 200208..201164
/locus_tag="Dester_0222"
/EC_number="2.7.7.6"
/note="COGs: COG0202 DNA-directed RNA polymerase alpha
subunit/40 kD subunit;
HAMAP: DNA-directed RNA polymerase, alpha subunit;
InterPro IPR011261: IPR011262: IPR011260: IPR011773: IPR
011263;
KEGG: aae:aq_070 DNA-directed RNA polymerase subunit
alpha;
PFAM: DNA-directed RNA polymerase, insert; DNA-directed
RNA polymerase, dimerisation; RNA polymerase, alpha
subunit, C-terminal;
SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type;
SPTR: DNA-directed RNA polymerase subunit alpha;
TIGRFAM: DNA-directed RNA polymerase, alpha subunit;
PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA
polymerase Rpb3/RpoA insert domain; Bacterial RNA
polymerase, alpha chain C terminal domain;
TIGRFAM: DNA-directed RNA polymerase, alpha subunit,
bacterial and chloroplast-type"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="YP_004280938.1"
/db_xref="GI:325294424"
/db_xref="GeneID:10269433"
/translation="MVEFITPEKFLWEEHTENYGRFVVEPLEKGYGTTVGNALRRVLL
SSIEGAAPTAVKFEGAYHEFTTLPGVVEDVTEIVLNLKQLRFILHGEGPVFIELKKRG
PGKVYAKDFELPSQVELLTPDQEIATLDNENSEIEIYLRIDKGKGFVLSEDIQEIFDI
STIGWIPLDADFSPIKKVAFRVEDTRVGRRTDYNRLTMEIWTDGSITPKDAVVRAANI
LIEHFSMVRDKLVEAIFATAQPEEVKKEEVPEIYNQTLEEAGLKGRALKILGENGITT
VGDLVKLTKKELESMKGLGKKSLAEIENFLASLGFELGGGQK"
misc_feature 200214..201149
/locus_tag="Dester_0222"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:235359"
misc_feature 200235..200885
/locus_tag="Dester_0222"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(200235..200237,200241..200243,200277..200279,
200286..200288,200292..200300,200307..200309,
200319..200321,200328..200333,200343..200345,
200853..200855,200862..200867,200871..200876,
200880..200885)
/locus_tag="Dester_0222"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(200268..200270,200304..200306,200316..200318,
200325..200330,200391..200393,200397..200399,
200403..200405,200409..200420,200433..200435,
200451..200453,200598..200600,200649..200651,
200712..200714,200718..200720,200736..200744,
200748..200759,200787..200789,200796..200798,
200802..200804)
/locus_tag="Dester_0222"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(200397..200399,200433..200435,200442..200444,
200451..200456,200646..200651,200655..200657,
200718..200720,200733..200738,200763..200765)
/locus_tag="Dester_0222"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 200958..201131
/locus_tag="Dester_0222"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 201161..201541
/locus_tag="Dester_0223"
/db_xref="GeneID:10269434"
CDS 201161..201541
/locus_tag="Dester_0223"
/note="COGs: COG0203 ribosomal protein L17;
HAMAP: ribosomal protein L17;
InterPro IPR000456;
KEGG: ccb:Clocel_3703 50S ribosomal protein L17;
PFAM: ribosomal protein L17;
SPTR: ribosomal protein L17;
TIGRFAM: ribosomal protein L17;
PFAM: ribosomal protein L17;
TIGRFAM: ribosomal protein L17"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="YP_004280939.1"
/db_xref="GI:325294425"
/db_xref="GeneID:10269434"
/translation="MRHRVKGKKLGRPTEHRLLMLRNLVTDLIEHGKVVTTVARAKEL
KRLADKVINKAKQEDKVKAIREVLTIVTRKDVAYKLVNEIAPKYANRNGGYTRLLHYS
FRKGDAAPTAIVMLVEPKEGNSEE"
misc_feature 201170..201511
/locus_tag="Dester_0223"
/note="50S ribosomal protein L17; Validated; Region: rplQ;
PRK05591"
/db_xref="CDD:235522"
gene complement(201619..201852)
/locus_tag="Dester_0224"
/db_xref="GeneID:10269435"
CDS complement(201619..201852)
/locus_tag="Dester_0224"
/note="InterPro IPR005527;
KEGG: dtu:Dtur_1398 cell division topological specificity
factor MinE;
PFAM: septum formation topological specificity factor
MinE;
SPTR: uncharacterized protein;
TIGRFAM: septum formation topological specificity factor
MinE;
PFAM: septum formation topological specificity factor
MinE;
TIGRFAM: cell division topological specificity factor
MinE"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor
MinE"
/protein_id="YP_004280940.1"
/db_xref="GI:325294426"
/db_xref="GeneID:10269435"
/translation="MGLWPFRKKSSKEIAKKRLQLVLKYDRAGLPPNAIEEVKNAILN
ALKDFPFIDASGVSIYVPNEDSEKIEIEIPVKN"
misc_feature complement(201622..201834)
/locus_tag="Dester_0224"
/note="Septum formation topological specificity factor
MinE; Region: MinE; cl00538"
/db_xref="CDD:241933"
gene complement(201857..202654)
/locus_tag="Dester_0225"
/db_xref="GeneID:10269436"
CDS complement(201857..202654)
/locus_tag="Dester_0225"
/note="COGs: COG2894 septum formation inhibitor-activating
ATPase;
InterPro IPR010223;
KEGG: hau:Haur_3422 septum site-determining protein MinD;
SPTR: septum site-determining protein MinD;
TIGRFAM: septum site-determining protein MinD;
PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain;
TIGRFAM: septum site-determining protein MinD"
/codon_start=1
/transl_table=11
/product="septum site-determining protein MinD"
/protein_id="YP_004280941.1"
/db_xref="GI:325294427"
/db_xref="GeneID:10269436"
/translation="MADKVICVTSGKGGVGKSTITGNLATALAAKGYKVVAIDADIGL
RNLDLILGLENRIVYDIVHVAEGVCPVEKALVKDKRTKNLHLLPAAQTKDKNAISPED
LVNIVESLREKFDFIFIDSPAGIEEGFKTAVTPADTILVVANPEMASIRDADRVTGLC
ETMGKPEPKLIVNRLDPKKVAKGDMLDAEDVVQILGLELIGIVPEDKNMVSYINRGEP
AVLFEESIAGKALRNVAERLLGKEVPFLNLEYNEGFFEKLKKLFGGD"
misc_feature complement(201863..202654)
/locus_tag="Dester_0225"
/note="Septum formation inhibitor-activating ATPase [Cell
division and chromosome partitioning]; Region: MinD;
COG2894"
/db_xref="CDD:225447"
misc_feature complement(201965..202642)
/locus_tag="Dester_0225"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:238993"
misc_feature complement(202598..202624)
/locus_tag="Dester_0225"
/note="P-loop; other site"
/db_xref="CDD:238993"
misc_feature complement(order(202043..202045,202598..202609,
202613..202615))
/locus_tag="Dester_0225"
/note="ADP binding residues [chemical binding]; other
site"
/db_xref="CDD:238993"
misc_feature complement(202532..202540)
/locus_tag="Dester_0225"
/note="Switch I; other site"
/db_xref="CDD:238993"
misc_feature complement(202283..202297)
/locus_tag="Dester_0225"
/note="Switch II; other site"
/db_xref="CDD:238993"
gene complement(202654..203304)
/locus_tag="Dester_0226"
/db_xref="GeneID:10269437"
CDS complement(202654..203304)
/locus_tag="Dester_0226"
/note="COGs: COG0850 septum formation inhibitor;
HAMAP: septum formation inhibitor MinC;
InterPro IPR005526: IPR013033;
KEGG: slp:Slip_0694 septum site-determining protein MinC;
PFAM: septum formation inhibitor MinC, C-terminal;
SPTR: Probable septum site-determining protein minC;
PFAM: septum formation inhibitor MinC, C-terminal domain;
TIGRFAM: septum site-determining protein MinC"
/codon_start=1
/transl_table=11
/product="septum site-determining protein minC"
/protein_id="YP_004280942.1"
/db_xref="GI:325294428"
/db_xref="GeneID:10269437"
/translation="MEFKLRGTNVIGIEIITDSKSFDVEAIKNFILEKKQLLKGSRFI
VCVEDRKLSKNEIIELSLFIQNVDELTFCGFKTNLKENRELCISLGIPCDLSEMEIEK
ERERAETEEVKFVRKTLRSGDKVTSTGDLVILGDVNPGAEVEAGGNVYVMGSLRGIVK
AGIGKSEAEVRALYFEAPRLEICNQERTFDRKESYVNFKARVKSGKLKIESLKKGR"
misc_feature complement(202669..203298)
/locus_tag="Dester_0226"
/note="Septum formation inhibitor [Cell division and
chromosome partitioning]; Region: MinC; COG0850"
/db_xref="CDD:223919"
misc_feature complement(202669..202971)
/locus_tag="Dester_0226"
/note="Septum formation inhibitor MinC, C-terminal domain;
Region: MinC_C; pfam03775"
/db_xref="CDD:146423"
gene 203371..204174
/locus_tag="Dester_0227"
/db_xref="GeneID:10269438"
CDS 203371..204174
/locus_tag="Dester_0227"
/EC_number="3.5.3.11"
/note="COGs: COG0010
Arginase/agmatinase/formimionoglutamate hydrolase arginase
family;
InterPro IPR006035: IPR005925;
KEGG: mvo:Mvol_1153 agmatinase;
PFAM: Ureohydrolase;
PRIAM: Agmatinase;
SPTR: Agmatinase;
TIGRFAM: agmatinase;
PFAM: Arginase family;
TIGRFAM: agmatinase"
/codon_start=1
/transl_table=11
/product="agmatinase"
/protein_id="YP_004280943.1"
/db_xref="GI:325294429"
/db_xref="GeneID:10269438"
/translation="MVFLGASSQGKLLLFGIPYDSTTCFRPGARFAPDGIRFFSENLE
TYSPSLDKDLEAVRFRDLGNVDVPANPEKLIKTVEDFMKNVEIPIMIGGEHSVTYPVV
KSLFERYGNLTVIHFDAHADLRDEYSGTKYSHACVMKRILELGCNLIQIGIRSGTKEE
FELMKNSLQITYLYSPKDLPEILKSIKTPVYITIDIDFFDPAYAPGTGTPEPCGFSPI
EFFETIYKLPPVKVVGFDVVEVSPPYDPSGITQMLAAKIVRELILKFWG"
misc_feature 203407..204159
/locus_tag="Dester_0227"
/note="agmatinase; Region: agmatinase; TIGR01230"
/db_xref="CDD:233323"
misc_feature 203410..204156
/locus_tag="Dester_0227"
/note="Agmatinase and related proteins; Region:
Agmatinase-like_2; cd11593"
/db_xref="CDD:212539"
misc_feature order(203653..203655,203722..203724,203728..203736,
203770..203775,203953..203955,203959..203961,
204085..204087)
/locus_tag="Dester_0227"
/note="putative active site [active]"
/db_xref="CDD:212539"
misc_feature order(203653..203655,203722..203724,203728..203730,
203734..203736,203953..203955,203959..203961)
/locus_tag="Dester_0227"
/note="Mn binding site [ion binding]; other site"
/db_xref="CDD:212539"
gene 204177..205040
/locus_tag="Dester_0228"
/db_xref="GeneID:10269439"
CDS 204177..205040
/locus_tag="Dester_0228"
/EC_number="2.5.1.16"
/note="COGs: COG0421 Spermidine synthase;
HAMAP: Spermidine synthase;
InterPro IPR001045;
KEGG: sul:SYO3AOP1_0155 spermidine synthase;
PFAM: Spermine synthase;
PRIAM: Spermidine synthase;
SPTR: Spermidine synthase;
TIGRFAM: Spermine synthase;
PFAM: Spermine/spermidine synthase;
TIGRFAM: spermidine synthase"
/codon_start=1
/transl_table=11
/product="spermidine synthase"
/protein_id="YP_004280944.1"
/db_xref="GI:325294430"
/db_xref="GeneID:10269439"
/translation="MLWFTEYYSGEGMDLKGTGLTIKVKNALTTKTPFQEILLLDTED
FGKMLVLDGAIQTTEKDEFIYHEMIVHPALFTLGRKPERVLVIGGGDGGTVREVIKHN
PEKVELVEIDREVVEFAKRELPSISCALDDERVELIFDDGREYIKGKENLYDIIIVDC
SDPIGPSRVLYEEEFYKDAFKALKDDGIFVTQSESPFAQNRVHKKVVKELQKVFSIVR
PYFAFIPTYPSGMWSFTIGSKILDPLTVNPEKLLGKVSNLEKSAGKLKYYNSQIHYGA
FAVPNFIYEEE"
misc_feature 204180..205025
/locus_tag="Dester_0228"
/note="spermidine synthase; Provisional; Region: PRK00811"
/db_xref="CDD:234843"
misc_feature 204423..204752
/locus_tag="Dester_0228"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(204435..204455,204504..204509,204594..204602,
204651..204653)
/locus_tag="Dester_0228"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 205042..206097
/locus_tag="Dester_0229"
/db_xref="GeneID:10269440"
CDS 205042..206097
/locus_tag="Dester_0229"
/note="COGs: COG1568 methyltransferase;
InterPro IPR002723;
KEGG: mfs:MFS40622_0658 protein of unknown function DUF43;
PFAM: Protein of unknown function DUF43;
SPTR: uncharacterized protein;
PFAM: Protein of unknown function DUF43"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280945.1"
/db_xref="GI:325294431"
/db_xref="GeneID:10269440"
/translation="MEILKQIAQEAEKNTQVPAYPRSVEKVIAAVISTPNFWKVVDLS
DEPLPLVAEILKLLNKHGLVVFEGNQILLTEAGNELVKKLGIETFVSHRCSCCNGRGV
VIEGSLKEAFEKFLKIQEKRPPAIHQYDQGFVTPENTFARVALADDRGDLRGKNVIVL
GDDDLMSIALALSGLPKKVTILEIDERLVNFIKEVSNEYNLNIDARVHDLRQPLPEDV
VGAYDTFFTDPPETVEAIKAFVGRGVATLKSERCAGYFGVTRRESSLDKWRRIQKVLL
EMGLVITDLLHNFNEYVNWDYYEDMRGWQLTPVKEPPKDIWYKSTQFRVETVRGFKGF
NDPIVGDIYNDAESSTT"
misc_feature 205042..206094
/locus_tag="Dester_0229"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG1568"
/db_xref="CDD:224484"
misc_feature 205141..>205245
/locus_tag="Dester_0229"
/note="Clavaminic acid synthetase (CAS) -like; CAS is a
trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
carrying out three reactions in the biosynthesis of
clavulanic acid, an inhibitor of class A serine
beta-lactamases. In general, Fe(II)-2OG oxygenases...;
Region: CAS_like; cl00184"
/db_xref="CDD:241666"
misc_feature 205507..205785
/locus_tag="Dester_0229"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(205519..205539,205588..205593,205663..205671,
205723..205725)
/locus_tag="Dester_0229"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(206136..207731)
/locus_tag="Dester_0230"
/db_xref="GeneID:10269441"
CDS complement(206136..207731)
/locus_tag="Dester_0230"
/EC_number="2.3.1.182"
/note="COGs: COG0119
Isopropylmalate/homocitrate/citramalate synthase;
InterPro IPR000891: IPR013709: IPR005675;
KEGG: tpt:Tpet_0368 alpha-isopropylmalate/homocitrate
synthase family transferase;
PFAM: 2-isopropylmalate synthase LeuA, allosteric
(dimerisation) domain; Pyruvate carboxyltransferase;
PRIAM: (R)-citramalate synthase;
SPTR: 2-isopropylmalate synthase;
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase
related;
PFAM: HMGL-like; LeuA allosteric (dimerisation) domain;
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase"
/codon_start=1
/transl_table=11
/product="2-aminoethylphosphonate ABC transporter
substrate-binding protein"
/protein_id="YP_004280946.1"
/db_xref="GI:325294432"
/db_xref="GeneID:10269441"
/translation="MVYIYDTTLRDGAQTRGVSFSLEDKLRITQALDDLGVHYIEGGW
PGSNPKDLAYFETVKGLNLKNSKIVAFSSTKRKGIKIEEDANIAQLVKTKVPAVTVFG
KSWDLHVTEALKISLEENLELIYQTIEYLKKYFDEVFFDAEHFFDGYKENPEYAVKTL
KAAEEAGADCLILCDTNGGTLWYETEEIFDAVSKKVKAPLGIHAHNDSDMAVVNSLIA
VKKGAIQIQGTINGLGERAGNANLCSIIPNLVIKMGYKSIPIENLKKLYSVSRLVSEL
LNRPHPANLPFVGDNAFAHKAGVHVSAVEKNPRTYEHINPELIGNRRRIMVSELSGRS
NIVNKARELGIELDKNSPEVKKILEKIKYLEAQGYHFEGAEASFELLLKETLGMSKKY
FELKGFRVFTEKRSEEEEAYAEATVKVEIPEEIAREKGIEDRFEHTAAEGRGPVEALD
KALRKALEKFYPSIKEVKLTDYKVRILNEAAGTGASPRVLIESTDGKRKWGTVGVSPN
VIEASWIALVDALKYKLMKDDEG"
misc_feature complement(206142..207731)
/locus_tag="Dester_0230"
/note="putative alpha-isopropylmalate/homocitrate synthase
family transferase; Provisional; Region: PRK12344"
/db_xref="CDD:237068"
misc_feature complement(206907..207722)
/locus_tag="Dester_0230"
/note="Desulfobacterium autotrophicum LeuA3 and related
proteins, N-terminal catalytic TIM barrel domain; Region:
DRE_TIM_LeuA3; cd07941"
/db_xref="CDD:163679"
misc_feature complement(order(207117..207119,207123..207125,
207210..207212,207303..207305,207513..207515,
207519..207521,207609..207611,207690..207692,
207699..207704))
/locus_tag="Dester_0230"
/note="active site"
/db_xref="CDD:163679"
misc_feature complement(order(207609..207611,207699..207704))
/locus_tag="Dester_0230"
/note="catalytic residues [active]"
/db_xref="CDD:163679"
misc_feature complement(order(207117..207119,207123..207125,
207210..207212,207699..207701))
/locus_tag="Dester_0230"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163679"
misc_feature complement(206160..206618)
/locus_tag="Dester_0230"
/note="LeuA allosteric (dimerisation) domain; Region:
LeuA_dimer; smart00917"
/db_xref="CDD:214910"
gene complement(207758..208978)
/locus_tag="Dester_0231"
/db_xref="GeneID:10269442"
CDS complement(207758..208978)
/locus_tag="Dester_0231"
/EC_number="2.7.2.4"
/note="COGs: COG0527 Aspartokinase;
InterPro IPR001048: IPR002912: IPR005260: IPR001341;
KEGG: saf:SULAZ_1497 asparate kinase, monofunctional
class;
PFAM: Aspartate/glutamate/uridylate kinase; Amino
acid-binding ACT;
SPTR: Aspartokinase;
TIGRFAM: Aspartate kinase domain; Aspartate kinase,
monofunctional class;
PFAM: ACT domain; Amino acid kinase family;
TIGRFAM: aspartate kinase, monofunctional class; aspartate
kinase"
/codon_start=1
/transl_table=11
/product="aspartate kinase"
/protein_id="YP_004280947.1"
/db_xref="GI:325294433"
/db_xref="GeneID:10269442"
/translation="MALVVQKFGGTSMGSIERIKHVARRVLQEKEKGNDVVVVVSAMA
GETDRLINLVKEITAEPNERDMDFVVSTGEQVSAGLLSIVLNNMGYPAVSLTGWQAGI
KTDNAFTKARILDIDVERIKKHLKEGKLVVITGFQGITEEGDITTLGRGGSDTSAVAL
AAALNADRCDIYTDVDGVYTADPRIVPQAKRIDVLSYEEMLELASLGAKVLQIRSVEF
AMKYNVPLRVRSTFTEDEGTLIKEEDETMERVVVRGIAHNKNEARITVERVPDKPGIA
ARIFDALAEANIPVDMIVQNVSVDGYTDISFTVEKNDASKAEKITKEVANEIGARNVI
RDDRIAKVSVVGLGMRSHAGVAGKVFETLAKYGINIVMISTSEIKISCIVEEKFTELA
VRVLHEAFGLDKSE"
misc_feature complement(207770..208978)
/locus_tag="Dester_0231"
/note="aspartate kinase; Reviewed; Region: PRK06635"
/db_xref="CDD:235843"
misc_feature complement(208256..208972)
/locus_tag="Dester_0231"
/note="AAK_AK-DapG-like: Amino Acid Kinase Superfamily
(AAK), AK-DapG-like; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the
diaminopimelate-sensitive aspartokinase isoenzyme AKI
(DapG), a monofunctional enzymes found in Bacilli; Region:
AAK_AK-DapG-like; cd04246"
/db_xref="CDD:239779"
misc_feature complement(order(208343..208345,208382..208384,
208517..208519,208757..208759,208838..208840,
208958..208960))
/locus_tag="Dester_0231"
/note="putative catalytic residues [active]"
/db_xref="CDD:239779"
misc_feature complement(order(208442..208447,208454..208459,
208946..208954,208958..208960))
/locus_tag="Dester_0231"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:239779"
misc_feature complement(order(208757..208759,208838..208840,
208853..208858))
/locus_tag="Dester_0231"
/note="putative aspartate binding site [chemical binding];
other site"
/db_xref="CDD:239779"
misc_feature complement(207977..208198)
/locus_tag="Dester_0231"
/note="ACT domains of the lysine-sensitive aspartokinase
isoenzyme AKII of Bacillus subtilis (BS) strain 168 and
related proteins; Region: ACT_AKii-LysC-BS-like_1;
cd04913"
/db_xref="CDD:153185"
misc_feature complement(208082..208087)
/locus_tag="Dester_0231"
/note="putative allosteric regulatory site; other site"
/db_xref="CDD:153185"
misc_feature complement(207773..207961)
/locus_tag="Dester_0231"
/note="ACT domains of the lysine-sensitive, aspartokinase
(AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168
and related domains; Region: ACT_AKii-LysC-BS-like_2;
cd04936"
/db_xref="CDD:153208"
misc_feature complement(207959..207961)
/locus_tag="Dester_0231"
/note="putative allosteric regulatory residue; other site"
/db_xref="CDD:153208"
gene complement(209001..213329)
/locus_tag="Dester_0232"
/db_xref="GeneID:10269443"
CDS complement(209001..213329)
/locus_tag="Dester_0232"
/EC_number="1.4.7.1"
/note="COGs: COG0069 Glutamate synthase domain 2;
InterPro IPR000583: IPR006982: IPR002932: IPR002489;
KEGG: hth:HTH_0871 ferredoxin-dependent glutamate
synthase;
PFAM: Glutamate synthase, central-C; Glutamine
amidotransferase, class-II; Glutamate synthase, central-N;
Glutamate synthase, alpha subunit, C-terminal;
PRIAM: Glutamate synthase (ferredoxin);
SPTR: Ferredoxin-dependent glutamate synthase;
PFAM: Conserved region in glutamate synthase; GXGXG motif;
Glutamate synthase central domain; Glutamine
amidotransferases class-II"
/codon_start=1
/transl_table=11
/product="Glutamate synthase (ferredoxin)"
/protein_id="YP_004280948.1"
/db_xref="GI:325294434"
/db_xref="GeneID:10269443"
/translation="MKSKDSCGVGFIVNTKRKKSYSIIDKGLRAVSNLTHRGATLADG
RTGDGSGILFQIPHEFFLNEAKRLDPNFQAKKVAIGTFFLKENIDKSIETIEKEVKKI
FGSYVIREVPIDKKECGELARKALPEIIQIIVPAKKNSIEIYLLRRKLEKLLKNISYQ
NYVVSFSDKLVVYKGMLLAPDLKRFYLDLQNEELKSSFAIFHQRYSTNTNPEWKLAQP
LRLIAHNGEINTITANRNFIKAVEPILRSSVLGEKIKDVLPLVDFDESDSASLDRVFE
LMVMCGIDPAVAINVLIPPAYELLDNLNDEVKAFFQYAATLMKPWDGPAAITFTDGKV
VGGKLDRNGLRPARYIITEDAVIFGSEVGMIDIPEEDVKEFGRLKPGETILIDTETGT
IEKSEEILNRITIEFNVSREVRRKLFKLKNFEKVEPNPSENLNKELIKYCFYKEDLEE
VVEYMAEMGKEPVFSMGDDTPIPNLLDRPYLLFKHFKQRFAQVTNPPIDPIREKSVMS
LKMKLGAKENFLELTGKVPRRLEIDSPLLTPSELKKIKKAEFLKVKEFRMEFEDSLKD
GLEKLFEEVKKAIVEESIDIVILSDKSVKYPIPSLLAVSGLSTFLEKEKLLSKISIIV
ETGEVRDTHQIAALIAFGAAAVHPYLVFEYLKTKELDLNLSYHQLEENYKKAINNGIL
KIMSKMGISLLSSYHRSQLFDIVGISKEVVEQYFPNTFSPIGGVTLDDIEKIVRDRVK
LSEEKEEPEFSGELKFRPDGIYHSWNPEVVRGIFKAARSGKYEDFKKVVEAVKKRPTY
IRDLLKIKSDRKPIPIEEVEPIESIVKRLMVPGMSVGALSKVAHEVIAEAMNILGAKS
CSGEGGEDPERYGTIKNSKIKQVASGRFGVTPSYLASAEEIEIKLAQGAKPGEGGHLP
GHKVTPYIAFLRFSVPGVALISPPPHHDIYSIEDLAQLIYDLKLSNPKAKIAVKLVAE
SGVGTVASGVAKAKADIVQISGASGGTGASPLSSIKGAGMPWEIGLPETHRNLVENNL
RENVVLRVDGGFKIGRDVVIAALMGAEEFGFGTAAMIAEGCVMDRECHTNRCPVGIAT
QDEAKIKRFRGAVESVVNYFKLVAEDIRHILAEMGYRSLDEIIGRYDLLEENKEVKES
YRFAKNLDLSFITESPVYRIKRKNYPYTPIKSQLNEQIVKDVLPYLERREKTFKEYEI
KNTDRSVGVLLGYHVAKSLGKEKLSPNFIHLRFRGVAGQSFGAFLPCGITLELIGEAN
DYVGKGLGGGTIILKFPEEFKGNPHENVIAGNTLLYGATGGGLFASGVVGERFAVRNS
GAIAVVEGAGQHACEYMVRGIVVILGKVGKNFGAGMTGGTAFVLDRDIEEKINRDYVE
VRKLNNQDFEVLKSLLSKHYKFTRSKIAAIILENRFLLESIRKIVPIGVKELEVKLSG
MDKLPE"
misc_feature complement(209094..213320)
/locus_tag="Dester_0232"
/note="glutamate synthase subunit alpha; Provisional;
Region: gltB; PRK11750"
/db_xref="CDD:236968"
misc_feature complement(212121..213311)
/locus_tag="Dester_0232"
/note="Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation in
bacteria, cyanobacteria and plants. The...; Region: GltS;
cd00713"
/db_xref="CDD:238365"
misc_feature complement(order(212529..212531,212649..212657,
212718..212720,213219..213221,213309..213311))
/locus_tag="Dester_0232"
/note="active site"
/db_xref="CDD:238365"
misc_feature complement(order(212700..212702,212940..212942,
212952..212954,212985..212987,213000..213002,
213030..213032,213042..213044,213051..213053))
/locus_tag="Dester_0232"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238365"
misc_feature complement(211203..211994)
/locus_tag="Dester_0232"
/note="Glutamate synthase central domain; Region:
Glu_syn_central; pfam04898"
/db_xref="CDD:218318"
misc_feature complement(209919..210857)
/locus_tag="Dester_0232"
/note="Glutamate synthase (GltS) FMN-binding domain. GltS
is a complex iron-sulfur flavoprotein that catalyzes the
reductive synthesis of L-glutamate from 2-oxoglutarate and
L-glutamine via intramolecular channelling of ammonia, a
reaction in the plant, yeast...; Region: GltS_FMN;
cd02808"
/db_xref="CDD:239202"
misc_feature complement(order(210084..210086,210099..210101,
210117..210119,210141..210146,210207..210209,
210213..210215,210330..210338,210426..210428,
210552..210554,210612..210614,210630..210632,
210696..210698,210750..210752,210831..210842))
/locus_tag="Dester_0232"
/note="active site"
/db_xref="CDD:239202"
misc_feature complement(order(210141..210146,210207..210209,
210213..210215,210333..210338,210426..210428,
210630..210632,210696..210698,210750..210752,
210831..210842))
/locus_tag="Dester_0232"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:239202"
misc_feature complement(order(210330..210335,210552..210554,
210612..210614))
/locus_tag="Dester_0232"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239202"
misc_feature complement(order(210084..210086,210099..210101,
210117..210119))
/locus_tag="Dester_0232"
/note="3Fe-4S cluster binding site [ion binding]; other
site"
/db_xref="CDD:239202"
misc_feature complement(209094..209792)
/locus_tag="Dester_0232"
/note="gltb_C. This domain is found at the C-terminus of
the large subunit (gltB) of glutamate synthase (GltS).
GltS encodes a complex iron-sulfur flavoprotein that
catalyzes the synthesis of L-glutamate from L-glutamine
and 2-oxoglutarate. It requires the...; Region: gltB_C;
cd00982"
/db_xref="CDD:238482"
misc_feature complement(order(209211..209222,209259..209261,
209268..209270,209277..209279,209316..209318,
209322..209327,209334..209345,209370..209372,
209376..209381,209388..209402,209427..209429,
209436..209438,209445..209447,209454..209465,
209520..209522,209529..209531,209544..209552,
209586..209588,209598..209603,209610..209612,
209667..209672,209679..209681,209688..209693))
/locus_tag="Dester_0232"
/note="domain interface; other site"
/db_xref="CDD:238482"
gene 213483..214556
/locus_tag="Dester_0233"
/db_xref="GeneID:10269444"
CDS 213483..214556
/locus_tag="Dester_0233"
/note="InterPro IPR001584;
KEGG: saf:SULAZ_1706 transposase;
PFAM: Integrase, catalytic core;
SPTR: transposase;
PFAM: Integrase core domain"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_004280949.1"
/db_xref="GI:325294435"
/db_xref="GeneID:10269444"
/translation="MKQLKRFKGTSLHISSTNTAFKETLKEGRRVKKKLDLTKDRNVK
RRLKWIEYYHKTGNARKTCRYFGISPTTFYKWKKRYDKYGIEGLQDRNKRPHKVRQPQ
TEPEIEHIIVTIREKFPTWSKEKIAAFMERYLNVKISSSTVYRVLKRHGLIERTWKLK
STYKRKKQKGKKNRTRKGLRADKPGTILMDVKYLYWCGKTFYQFTAIDKFTRIAFAKV
YSTKSSRSGRRFFEELEKFLPFKIEKVQTDNGSEFLGELDEYLKRKGIEHYFSYPKSP
KTNAHVERFIQTTESELWMIEGTEPTVDEMNKKLFEYLKIYNFLRPHHSLNYKTPAEK
FEDYIRSHQGVHHVLNSNTGLTI"
misc_feature 213615..213770
/locus_tag="Dester_0233"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature 213618..213935
/locus_tag="Dester_0233"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
misc_feature 213696..213923
/locus_tag="Dester_0233"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature 213777..214496
/locus_tag="Dester_0233"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:225361"
misc_feature 214032..214361
/locus_tag="Dester_0233"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 214272..214475
/locus_tag="Dester_0233"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene 214590..214667
/locus_tag="Dester_R0004"
/db_xref="GeneID:10269445"
tRNA 214590..214667
/locus_tag="Dester_R0004"
/product="tRNA-Glu"
/db_xref="GeneID:10269445"
gene 214839..215330
/locus_tag="Dester_0234"
/db_xref="GeneID:10269446"
CDS 214839..215330
/locus_tag="Dester_0234"
/EC_number="1.7.1.13"
/note="COGs: COG0780 Enzyme related to GTP cyclohydrolase
I;
HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF;
InterPro IPR020602: IPR016856;
KEGG: vpr:Vpar_0139 7-cyano-7-deazaguanine reductase;
PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase;
PRIAM: PreQ(1) synthase;
SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase;
TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF;
PFAM: GTP cyclohydrolase I;
TIGRFAM: 7-cyano-7-deazaguanine reductase"
/codon_start=1
/transl_table=11
/product="NADPH-dependent 7-cyano-7-deazaguanine
reductase"
/protein_id="YP_004280950.1"
/db_xref="GI:325294436"
/db_xref="GeneID:10269446"
/translation="MERKDFGTVSKLGKKTDYTFEYTPEVLEKFPNRFPGKIYWVSFN
CPEFTTLCPITGQPDFATIYIQYIPDKWLVESKSLKLYLFSFRNARDFHEDTVNRIAD
DIFNLLNPLYIEVYGEFNPRGGISIDPYVQRYQELDWVIELARERFKLHRITPPDIRR
NRG"
misc_feature 214908..215234
/locus_tag="Dester_0234"
/note="7-cyano-7-deazaguanine reductase; Provisional;
Region: PRK13258"
/db_xref="CDD:237320"
gene 215323..216192
/locus_tag="Dester_0235"
/db_xref="GeneID:10269447"
CDS 215323..216192
/locus_tag="Dester_0235"
/EC_number="2.4.2.28"
/note="COGs: COG0005 Purine nucleoside phosphorylase;
InterPro IPR000845;
KEGG: dtu:Dtur_0928 methylthioadenosine phosphorylase;
PFAM: Nucleoside phosphorylase;
PRIAM: S-methyl-5'-thioadenosine phosphorylase;
SPTR: Similar to 5'-methylthioadenosine phosphorylase;
PFAM: phosphorylase superfamily"
/codon_start=1
/transl_table=11
/product="S-methyl-5'-thioadenosine phosphorylase"
/protein_id="YP_004280951.1"
/db_xref="GI:325294437"
/db_xref="GeneID:10269447"
/translation="MVKVLILGGSGAYFLEKEAFGKIVEKKQVDTPFGLSNPIYKLKH
ENNFEFFFLSRHGEKDYEITAPFVNYRANIYAAKSLGVERIVAWTGPGSMREDFKPGD
YVIPDDLLDFTKSRKYTFFENGGLGFVRQSPVFCPEIRDVLNSVLKTSGFNYHCGGTY
VCTEGPRLETPAEIEMFKRMEGELVGMTLIPEVFLAKELEICYGALCYVTNYAEGIKP
YGFKSGVLFEGMLTEEQKEQVDLAVSNFPKIMKKVVEVLVSKERNCPCKSLMERYRLK
GRIGENWKEWIHS"
misc_feature 215323..216138
/locus_tag="Dester_0235"
/note="Phosphorylase superfamily; Region: PNP_UDP_1;
cl00303"
/db_xref="CDD:241766"
gene complement(216189..217178)
/locus_tag="Dester_0236"
/db_xref="GeneID:10269448"
CDS complement(216189..217178)
/locus_tag="Dester_0236"
/note="COGs: COG2899 conserved hypothetical protein;
InterPro IPR007427;
KEGG: abu:Abu_1367 hypothetical protein;
PFAM: Protein of unknown function DUF475;
SPTR: uncharacterized protein;
PFAM: Protein of unknown function (DUF475)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280952.1"
/db_xref="GI:325294438"
/db_xref="GeneID:10269448"
/translation="MTFRRLLLEFTLVLIISWIIEFFYMGVKGIFEGTTLSLLEISLS
FDNAVMNAVVLSGMSYIWRRRFLTWGMIIAVFGMRFLFPVLIVSLTAGIGIEKVTEMA
FSNPEEYAHYLEIAEPLILSFGGSFLLMVFINWLFDAGKELYWIRFLEEKAAKLAKVG
EIKLIVALTVVFIVGFLKKDSNILLAMILGILLFELVHFIKGAIEYFKRNSISSGGLA
NFIYLELLDASCSLDGAVGAFAISQNLIIITLGLSVGAFILRSLTVYFVESGKLRELP
YLEHGAHWGIGGLGIMMLAQLFHHIPEPVISTVALVFILSSLYTSIRKTEHLF"
misc_feature complement(216207..217145)
/locus_tag="Dester_0236"
/note="hypothetical protein; Provisional; Region:
PRK14013"
/db_xref="CDD:237583"
gene complement(217200..218177)
/locus_tag="Dester_0237"
/db_xref="GeneID:10269449"
CDS complement(217200..218177)
/locus_tag="Dester_0237"
/note="COGs: COG0859 ADP-heptose:LPS heptosyltransferase;
InterPro IPR002201;
KEGG: pmx:PERMA_0525 ADP-heptose:LPS heptosyltransferase;
PFAM: Glycosyl transferase, family 9;
SPTR: ADP-heptose:LPS heptosyltransferase;
PFAM: Glycosyltransferase family 9 (heptosyltransferase)"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_004280953.1"
/db_xref="GI:325294439"
/db_xref="GeneID:10269449"
/translation="MRILIIRFSSLGDVILVSSVFNSLREKGIEIDLLTYKPFGEVFK
GDYRVNKVIEVEKRKYKNLKSLKKLSEKLKDYDYGFDLHGNLRTFFLSRYLPFPVFKY
SKKSILRRLMITFKPFKAKWLYVPKMYAETFKKIGVEIENPRPEIPIFHHEVEKVKEL
LPKSNFAVIAPGARWKTKRYPEENFREIIKILERKDIKTVIVGGKEEKDIGEKLSLET
GAINLCGKLSIRESLSVLSLSRGVISNDSAVVHMARAVKKPVIAIFGPTHPAFGFAPY
EDEGKAITRNLPCSPCSLHGKTKCKERKCFEIPPSKIVSEFISLVEFHR"
misc_feature complement(217209..218177)
/locus_tag="Dester_0237"
/note="ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane]; Region: RfaF; COG0859"
/db_xref="CDD:223928"
misc_feature complement(217230..218174)
/locus_tag="Dester_0237"
/note="Lipopolysaccharide heptosyltransferase is involved
in the biosynthesis of lipooligosaccharide (LOS).
Lipopolysaccharide (LPS) is a major component of the outer
membrane of gram-negative bacteria. LPS
heptosyltransferase transfers heptose molecules from...;
Region: GT1_LPS_heptosyltransferase; cd03789"
/db_xref="CDD:99964"
misc_feature complement(order(217422..217424,217431..217436,
217443..217445,217479..217484,217572..217574,
217668..217673))
/locus_tag="Dester_0237"
/note="putative active site [active]"
/db_xref="CDD:99964"
gene complement(218177..218356)
/locus_tag="Dester_0238"
/db_xref="GeneID:10269450"
CDS complement(218177..218356)
/locus_tag="Dester_0238"
/note="COGs: COG1773 Rubredoxin;
InterPro IPR004039;
KEGG: tpe:Tpen_1457 rubredoxin-type Fe(Cys)4 protein;
PFAM: Rubredoxin-type Fe(Cys)4 protein;
SPTR: Rubredoxin;
PFAM: Rubredoxin"
/codon_start=1
/transl_table=11
/product="rubredoxin-type Fe(Cys)4 protein"
/protein_id="YP_004280954.1"
/db_xref="GI:325294440"
/db_xref="GeneID:10269450"
/translation="MEEKQYKLWRCTVCGYIYDVDEGDPDNNVPPGTSFEAIPDDWVC
PICGVTKDKFEPVDD"
misc_feature complement(218183..218341)
/locus_tag="Dester_0238"
/note="Rubredoxin [Energy production and conversion];
Region: COG1773"
/db_xref="CDD:224687"
misc_feature complement(218186..218332)
/locus_tag="Dester_0238"
/note="Rubredoxin; nonheme iron binding domains containing
a [Fe(SCys)4] center. Rubredoxins are small nonheme iron
proteins. The iron atom is coordinated by four cysteine
residues (Fe(S-Cys)4), but iron can also be replaced by
cobalt, nickel or zinc. They are...; Region: rubredoxin;
cd00730"
/db_xref="CDD:238372"
misc_feature complement(order(218216..218218,218225..218227,
218315..218317,218324..218326))
/locus_tag="Dester_0238"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:238372"
gene 218441..218728
/locus_tag="Dester_0239"
/db_xref="GeneID:10269451"
CDS 218441..218728
/locus_tag="Dester_0239"
/note="COGs: COG1550 conserved hypothetical protein;
InterPro IPR007546;
KEGG: pmx:PERMA_0394 YlxP;
PFAM: Protein of unknown function DUF503;
SPTR: YlxP;
PFAM: Protein of unknown function (DUF503)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280955.1"
/db_xref="GI:325294441"
/db_xref="GeneID:10269451"
/translation="MAAAIGFLEVHLRIPEAHSLKEKRGVVKRIIERLKNKFNVSVSE
IGEQDKWQSSVIGVVTIASSKKVVDATLEKVVVYIEDLYPGKVINYYKEIF"
misc_feature 218453..218719
/locus_tag="Dester_0239"
/note="Protein of unknown function (DUF503); Region:
DUF503; pfam04456"
/db_xref="CDD:146881"
gene 218762..220051
/locus_tag="Dester_0240"
/db_xref="GeneID:10269452"
CDS 218762..220051
/locus_tag="Dester_0240"
/note="COGs: COG2067 Long-chain fatty acid transport
protein;
InterPro IPR005017;
KEGG: ddf:DEFDS_1469 long-chain fatty acid transport
protein;
PFAM: Membrane protein, aromatic hydrocarbon degradation;
SPTR: Long-chain fatty acid transport protein;
PFAM: Protein of unknown function (DUF3308); Outer
membrane protein transport protein (OMPP1/FadL/TodX)"
/codon_start=1
/transl_table=11
/product="aromatic hydrocarbon degradation membrane
protein"
/protein_id="YP_004280956.1"
/db_xref="GI:325294442"
/db_xref="GeneID:10269452"
/translation="MKKFFSFFLLLSIPFVAKAGNVDTFGIGSKATSLGGAFSAYADD
PFAVYYNPAGLTQINGSLISVGAEYLSPTLKVYNFKAVDGDGLKVQPYDVSFTDTSNN
LIVPHFGLATYLFDNVYFGIAAYVPYGLHIKWESDPSKNPAAYNGFESYYLRGVVTPT
LAIKLSKKLSVGFGISLGRSDAGTQRRIYSPSIPTLHNKTIKGEFSDDFNYSFNFGLM
YKLCDNLSLGFTYRSRTSTDFKGTVEIVELSQKVKAETSIDHPAQIQAGIRYQPTKKL
NLMADVVWTDWSSIQDYTVKFDKPFLGKKEEKFPRNWKDTKQIRFGIEYKWNEIVTLR
GGYYYDPSPIPDETFDMLWPDADKRTYSFGVGLNFGKLSIDSVLQYITANHKRKIDGE
SVELNSSYEGVTGNPGTVALSADGHLWGYGVTVNYRF"
sig_peptide 218762..218818
/locus_tag="Dester_0240"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 218825..220048
/locus_tag="Dester_0240"
/note="Outer membrane protein transport protein
(OMPP1/FadL/TodX); Region: Toluene_X; cl17479"
/db_xref="CDD:248033"
gene 220064..221971
/locus_tag="Dester_0241"
/db_xref="GeneID:10269453"
CDS 220064..221971
/locus_tag="Dester_0241"
/note="KEGG: ddf:DEFDS_1470 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: Bacterial virulence factor lipase N-terminal"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280957.1"
/db_xref="GI:325294443"
/db_xref="GeneID:10269453"
/translation="MKKLLSLLITPMLFFSCGGSLQKTSSAPELSADSSVFERNGLVF
DPFATEPDSPLGIPFPNDLFWNSTYVYFDPSTTDNLETKALYEAINQLQIKGFSPNTP
IFIPLIDSIQLDVESLKSNLKIFDLTALALCSSNSTFCNLIDQTERLEIIQEGNYIKL
YPTKPLEAGHKYAVVLINGIKDVNGNPILSPQAFNKLEEEGKLDELYGALSTINPNLN
KDNILEAFTFTTADKTLSVSDLGSIKRYLESLNQGENATLTISGISYNEIENDYRSFD
LGNTTLSPLYGVLKLVSSDNNLKALISSGKFPAFDITKLSELFTKINLGETFDINDYV
KFIPIYFGNRDLYSGSVYIFQHGLGGSKERVEALLQDIQLPVVAIDLPFHGDYTKLTE
NSTFECSEGKCFLTSNVVQDRLNIYQAVFNLRLLELLIRNGFYDLNGDGNTDIPSAVN
FLGISMGSIVGSIYANYGTPNKVVLNVGGGNFVSILDRATNSLIESLLESVGVKKNTN
KYCMLLGIFQLILDPADPVYVGTTNLTNTIIQSAYQDTVVPNVSNKALARKVNFDSYV
QIESPDPNNPLSTVPGWYMFGNSTYWVNHAFLLHTNVENYPEAKEHLDVEFLQRAQKA
AREQIYNFLSN"
misc_feature 220064..220780
/locus_tag="Dester_0241"
/note="Bacterial virulence factor lipase N-terminal;
Region: Lipase_bact_N; pfam12262"
/db_xref="CDD:221497"
sig_peptide 220064..220129
/locus_tag="Dester_0241"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(222008..222421)
/locus_tag="Dester_0242"
/db_xref="GeneID:10269454"
CDS complement(222008..222421)
/locus_tag="Dester_0242"
/note="COGs: COG2105 conserved hypothetical protein;
InterPro IPR009288;
KEGG: dau:Daud_0268 hypothetical protein;
PFAM: AIG2-like;
SPTR: uncharacterized protein;
PFAM: AIG2-like family"
/codon_start=1
/transl_table=11
/product="AIG2 family protein"
/protein_id="YP_004280958.1"
/db_xref="GI:325294444"
/db_xref="GeneID:10269454"
/translation="MYYELLFVYGTLMSGLSAHTFLFDSEFVGHGILYGAKLLHLEEG
YPGVIEGEGEVFGEVYRVDSLTLAAIDLFEEFYKSFPERSFYLRIRKPIRLIQFNDFV
DAWVYVLNPLIIKNLSFTEVPFGNWKEFIKKLMKL"
misc_feature complement(222095..222406)
/locus_tag="Dester_0242"
/note="GGCT-like domains, also called AIG2-like family.
Gamma-glutamyl cyclotransferase (GGCT) catalyzes the
formation of pyroglutamic acid (5-oxoproline) from
dipeptides containing gamma-glutamyl, and is a dimeric
protein. In Homo sapiens, the protein is...; Region:
GGCT_like; cd06661"
/db_xref="CDD:119400"
misc_feature complement(order(222095..222097,222164..222166,
222200..222205,222386..222391,222395..222397,
222404..222406))
/locus_tag="Dester_0242"
/note="putative active site pocket [active]"
/db_xref="CDD:119400"
misc_feature complement(order(222098..222100,222107..222109,
222146..222148,222152..222166,222269..222271,
222275..222280))
/locus_tag="Dester_0242"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119400"
misc_feature complement(222200..222202)
/locus_tag="Dester_0242"
/note="putative catalytic residue [active]"
/db_xref="CDD:119400"
gene complement(222431..224845)
/locus_tag="Dester_0243"
/db_xref="GeneID:10269455"
CDS complement(222431..224845)
/locus_tag="Dester_0243"
/note="COGs: COG0187 type IIA topoisomerase (DNA
gyrase/topo II topoisomerase IV) B subunit;
InterPro IPR003594: IPR013506: IPR006171: IPR002288: IPR
011557: IPR001241;
KEGG: sul:SYO3AOP1_0964 DNA gyrase, B subunit;
PFAM: DNA topoisomerase, type IIA, subunit B, domain 2;
ATPase-like, ATP-binding domain; Toprim domain; DNA
topoisomerase, type IIA, subunit B, C-terminal;
SMART: DNA topoisomerase, type IIA, subunit B/N-terminal;
ATPase-like, ATP-binding domain;
SPTR: DNA gyrase subunit B;
TIGRFAM: DNA gyrase, subunit B;
PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit,
carboxyl terminus;
TIGRFAM: DNA gyrase, B subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_004280959.1"
/db_xref="GI:325294445"
/db_xref="GeneID:10269455"
/translation="MANNEKYDASAIKVLEGLEAVRKRPGMYIGDTGSYGLHHLVFEI
IDNSVDEALAGYCTEIKVIIHEDNSITVEDNGRGIPVDIHPEYGKPAAEIVMTVLHAG
GKFEKKAYKYSGGLHGVGVSVVNALSEWLKLEIHKDGKVYKQIYEKGNPVTEFACIGE
TKKRGTIVTFKPDPEIFEVTEFSWDILANRLRELAFLNKGLKITLIDERTEPQKEETF
YYEGGIVEFVKKINEKKDPLFPNPIYIAGEKDDILVEVALQYNSTYTEQVFSFVNNIN
TREGGTHVSGFRTALTRAIIKFIEENNLLPKNAKISVTGDDVREGLVTVISVKVPNPQ
FEGQTKAKLGNSEVRPIVASIVYDKLYAFLTERPDIGRKIAEKVITAARAREAAKRAR
ELTRRKSALEEFSLPGKLADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLK
GKIINVEKARIEKVLSNDEIKTIITALGTGIGKNFDMSKLRYSKIIIMTDADVDGAHI
RTLLLTFFFRQFPEIVERGHLYIAQPPLYRVKKGKREMYIKSDSELESVVLDFALDSV
LLLDNNGKEIPKEEGLKVVEDISKLESVVSILSRKRDRDIINILLRIGADYKDLYDRE
KAEKLVEEIKKNLPESLRKTEFELIEDKEHCCFKIFCRIPFDRYLKKTVEINKDLLIS
DLYKHGRGLKSRIREKLGEPPYKVETKKGEVKEFLTLEELYNYLLQVGKEGIYIQRYK
GLGEMNPDQLWETTMNPENRTLLKVSVEDAVKADEIFTILMGDKVEPRKEFIQKFAKE
VRNLDI"
misc_feature complement(222434..224845)
/locus_tag="Dester_0243"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:237860"
misc_feature complement(<224576..224737)
/locus_tag="Dester_0243"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:238030"
misc_feature complement(224705..224707)
/locus_tag="Dester_0243"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238030"
misc_feature complement(order(224612..224614,224618..224620))
/locus_tag="Dester_0243"
/note="G-X-G motif; other site"
/db_xref="CDD:238030"
misc_feature complement(223709..224182)
/locus_tag="Dester_0243"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:238419"
misc_feature complement(224027..224029)
/locus_tag="Dester_0243"
/note="anchoring element; other site"
/db_xref="CDD:238419"
misc_feature complement(order(223832..223834,223838..223843,
223850..223852))
/locus_tag="Dester_0243"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(order(223826..223828,223832..223834))
/locus_tag="Dester_0243"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238419"
misc_feature complement(223244..223585)
/locus_tag="Dester_0243"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature complement(order(223334..223336,223340..223342,
223346..223348,223553..223555,223562..223567))
/locus_tag="Dester_0243"
/note="active site"
/db_xref="CDD:173786"
misc_feature complement(order(223346..223348,223565..223567))
/locus_tag="Dester_0243"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature complement(222467..222658)
/locus_tag="Dester_0243"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(225726..227801)
/locus_tag="Dester_0244"
/db_xref="GeneID:10269456"
CDS complement(225726..227801)
/locus_tag="Dester_0244"
/note="COGs: COG2319 FOG: WD40 repeat;
InterPro IPR019781: IPR002469: IPR001680;
KEGG: npu:Npun_F1222 WD-40 repeat-containing protein;
PFAM: WD40 repeat, subgroup; peptidase S9B,
dipeptidylpeptidase IV N-terminal;
SPTR: G-protein beta WD-40 repeats containing protein, ;
PFAM: WD domain, G-beta repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280960.1"
/db_xref="GI:325294446"
/db_xref="GeneID:10269456"
/translation="MKKVVSLIVKHLLYICLNLIFIIFSLNSVASPQKEKFKLPKIRT
IPNKITLDVWEKWNSKNWILSVTFSPNGNWIAYGSYSSFNGRGTVTIIDPLTGNRKAV
LYTTGGQVEKLAVSPDGNLIAAGNAGGTIDIFDVKSKEKIKTLREHKRTISSIAFSPN
GKLLASADYDGVVKLWDLNTWEPIKTFSGKLVAFSPDSKYLAILNRKELFIYDISKGN
TSKILSLKNLYGPVDTICFSPDGTLIAFSNFDNIYILKVSKDNKMQIKLKMKKVIKGT
QYRKRMEHYPNYGEILSMSFSPDSKLIAIGTINFFKNRPQAGVVAIFDVKTGTCIKLL
EKYRNDVRSVTFSPDGSMIAFGCHSGELGVLKVEEPFFSLTTLDILDKDKLLSIPKGT
VIKAVRGNGGTYIVYPIYGKLKEGRLNPLYYSANPILVFKESPLLPYPGSQYPVGTIK
KGEIVDKKQILITRDKKYLYLDRKGFISANSTVKIKPCKISFLAKIEGTVLKTLPNEN
ASYTVPTGTVLFAKYFCPYFNYYLVTSPSGKSGWVSAQYLEKLPVKDINKDAVALKST
NLFFSVSSKDHGIPINQGEIIKVVFKLKNYPLYYVKKGKNKGLINKDSIAFIKMFNPQ
KLWTITDTVLLKAPQKSADVIRNLPKFTELKVLGRVNDFYYVEVISIKLKGWIPTELT
TLVKPDKLS"
sig_peptide complement(227712..227801)
/locus_tag="Dester_0244"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(226698..>227624)
/locus_tag="Dester_0244"
/note="FOG: WD40 repeat [General function prediction
only]; Region: COG2319"
/db_xref="CDD:225201"
misc_feature complement(226740..227624)
/locus_tag="Dester_0244"
/note="WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions including
adaptor/regulatory modules in signal transduction,
pre-mRNA processing and cytoskeleton assembly; typically
contains a GH dipeptide 11-24 residues from...; Region:
WD40; cd00200"
/db_xref="CDD:238121"
misc_feature complement(order(226791..226796,226830..226835,
226875..226877,226890..226892,226950..226955,
227052..227054,227064..227066,227118..227123,
227163..227168,227184..227186,227196..227198,
227232..227234,227271..227276,227292..227294,
227307..227309,227358..227363,227397..227402,
227418..227420,227430..227432,227484..227489,
227523..227528,227559..227561,227571..227573))
/locus_tag="Dester_0244"
/note="structural tetrad; other site"
/db_xref="CDD:238121"
gene 228090..229847
/locus_tag="Dester_0245"
/db_xref="GeneID:10269457"
CDS 228090..229847
/locus_tag="Dester_0245"
/note="COGs: COG0747 ABC-type dipeptide transport system
periplasmic component;
InterPro IPR000914;
KEGG: pmx:PERMA_1125 transporter;
PFAM: Bacterial extracellular solute-binding protein,
family 5;
SPTR: transporter;
PFAM: Bacterial extracellular solute-binding proteins,
family 5 Middle"
/codon_start=1
/transl_table=11
/product="family 5 extracellular solute-binding protein"
/protein_id="YP_004280961.1"
/db_xref="GI:325294447"
/db_xref="GeneID:10269457"
/translation="MKSIRSLVIFLFCFIVAIIFPLFFILEPSGKSGNYTLGKTVDLD
NVTFQVGHYGGTLYTATSSDPKTFNLVMAHETSSTETIGELFEGLTEVDLKTLKPRGA
LAESWEFKNDGLKWIFHLRKGVKWFDGKEFTADDVVFTYNQIYFNPKIPNSTKDMFLI
DGKLPKVKKIDKYTVEFDLPEPFAPLLYSLSAPIFPKHVLEEAVKSGKFMETWTVSTP
PEKLIGTGPYKLVKYVPGQYLVYERNRDYWKKDEEGKTLPYIDKKVKFILPDQNTQLL
KFKAGELDFYGVRGDDFPELKSGEKKGNYTIYNLGPSLTADFICFNQKKGAIPDWKWK
LFTNRKFRWAISHAIDRKGIILTVYNGLGYPVYSPVTPANKLYYDSSYPKFPYNLEKA
KKLLEEIGLKDRNGDGWLETPDGHKVEFNLLTNSNNPSRVQIGAIIKYDLKRLGIDVH
FQPLDFNNLVEKLLHTHDFDAVIIGLTGSIDPNGGRNVWMSSGQLHMWNPNQKKPATK
WEAEVDRLFEEGARELDFKKRVEIYKKAYRIISYEQPLIYIAAPLVLEAARNRVKNFF
PTVWGTYEAEKMFIEKNGK"
misc_feature 228246..229808
/locus_tag="Dester_0245"
/note="ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
DdpA; COG0747"
/db_xref="CDD:223818"
misc_feature 228255..229784
/locus_tag="Dester_0245"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_4; cd08500"
/db_xref="CDD:173865"
gene 229933..231117
/locus_tag="Dester_0246"
/db_xref="GeneID:10269458"
CDS 229933..231117
/locus_tag="Dester_0246"
/EC_number="1.11.1.5"
/note="COGs: COG1858 Cytochrome c peroxidase;
InterPro IPR004852;
KEGG: tal:Thal_0068 cytochrome-c peroxidase;
PFAM: Di-haem cytochrome c peroxidase;
PRIAM: Cytochrome-c peroxidase;
SPTR: Cytochrome-c peroxidase;
PFAM: Cytochrome c; Di-haem cytochrome c peroxidase"
/codon_start=1
/transl_table=11
/product="cytochrome-c peroxidase"
/protein_id="YP_004280962.1"
/db_xref="GI:325294448"
/db_xref="GeneID:10269458"
/translation="MKKFLSITTFLAICTGTPAIASTWDSICSKCHGIIAPSKDVLIK
KFKTKEALVEAAKNSAKHKKMPFDNVKAFEKAAKELFSREVSVKSVQEDFRSFFTPLP
SFPPIPKNNSLTPEKVKLGKMLYYDPRLSRSQLISCNTCHNLSIGGDDNQKTSIGHGW
QAGPRNAPTTINSGFLKVQFWDGRALTLEEQAAGPLQAHVEMNATPKLIVERLKRIPE
YVELFKKAFPGEKDPVTFENVTKAIAAFERTLNTPNSPFNRYLLGDDNALTSEQKEGM
KLFVKYGCIACHNGPVLSDGQFHEFKWNKDLGRYNVTKNPKDKYKFRTPQLLNVAITA
PYFHDGSVNSLEAAIKIMAKKELGKELSNIEAKKIKAFLESMTGEVPLEARVLPELPE
KN"
sig_peptide 229933..229995
/locus_tag="Dester_0246"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 230272..230736
/locus_tag="Dester_0246"
/note="Di-haem cytochrome c peroxidase; Region: CCP_MauG;
pfam03150"
/db_xref="CDD:217389"
gene complement(231153..232742)
/locus_tag="Dester_0247"
/db_xref="GeneID:10269459"
CDS complement(231153..232742)
/locus_tag="Dester_0247"
/EC_number="1.1.1.95"
/note="COGs: COG0111 phosphoglycerate dehydrogenase and
related dehydrogenase;
InterPro IPR006139: IPR006140: IPR002912: IPR006236;
KEGG: sul:SYO3AOP1_0259 D-3-phosphoglycerate
dehydrogenase;
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase,
NAD-binding; D-isomer specific 2-hydroxyacid
dehydrogenase, catalytic domain; Amino acid-binding ACT;
PRIAM: phosphoglycerate dehydrogenase;
SPTR: phosphoglycerate dehydrogenase;
TIGRFAM: D-3-phosphoglycerate dehydrogenase;
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; ACT domain; D-isomer specific
2-hydroxyacid dehydrogenase, catalytic domain;
TIGRFAM: D-3-phosphoglycerate dehydrogenase"
/codon_start=1
/transl_table=11
/product="D-3-phosphoglycerate dehydrogenase"
/protein_id="YP_004280963.1"
/db_xref="GI:325294449"
/db_xref="GeneID:10269459"
/translation="MYKILVTEHIADAGIELLKSQPDVELTYDPELFRNFEKILEIIP
EYDAIITRSGTPVKKELFERAKNLKVVGRAGVGVDNIDLDEASRRGILVVNAPTGNTL
AATEHTMGMMICAARAIPYAHNSLKEERRWDRKKFMGVELAGKTLGIIGFGRIGSRVG
IRAKAFDMKVIAYDPYIKKEKAERLGVELVDELDELLRRSDIITIHTPLTDETRNMIT
KKEIEKMKDGVIILNIARGGIIKEDDLYEALVSGKVRAAALDVFAKEPATDNILLDLP
NIVVTPHIGANTFESQTNVAVIIANQVLAALRGEEVEFAVNAPYDDTAAKVLKPFMDL
AEKLGLFAVQVACSRSKEIVLEYRGDLGEDLKPLTTAFLKGFLQNIVDIPVNLINAPF
LAKEKGISIVEVKRPEGINFKKLIKVICRSESGEFTIAGTVMDDQFPKIVEINGFLFD
LTPKGKFLLIKNFDVPGVIGKLGSILGKYNVNIAGFQLGRIERGKEAKGVILVDNDVP
QEAINEIKKIPEILEVKQINL"
misc_feature complement(231156..232739)
/locus_tag="Dester_0247"
/note="D-3-phosphoglycerate dehydrogenase; Provisional;
Region: PRK13581"
/db_xref="CDD:237436"
misc_feature complement(231813..232736)
/locus_tag="Dester_0247"
/note="Phosphoglycerate dehydrogenases, NAD-binding and
catalytic domains; Region: PGDH_4; cd12173"
/db_xref="CDD:240650"
misc_feature complement(order(231867..231869,231885..231887,
231894..231896,232035..232037,232443..232445,
232515..232520,232524..232526,232584..232589))
/locus_tag="Dester_0247"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:240650"
misc_feature complement(order(231885..231890,231894..231896,
231960..231965,232035..232043,232104..232106,
232119..232127,232215..232226,232278..232286,
232290..232292,232431..232433,232443..232445,
232515..232517))
/locus_tag="Dester_0247"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:240650"
misc_feature complement(order(231861..231863,231873..231884,
231888..231911,231915..231929,231942..231950,
231957..231959,232245..232250,232257..232259,
232308..232310,232314..232334,232341..232343,
232347..232355,232362..232367,232374..232379,
232383..232388,232392..232394,232401..232406,
232413..232418,232422..232427,232434..232439))
/locus_tag="Dester_0247"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:240650"
misc_feature complement(order(231894..231896,231948..231950,
232035..232037))
/locus_tag="Dester_0247"
/note="catalytic site [active]"
/db_xref="CDD:240650"
misc_feature complement(231156..231374)
/locus_tag="Dester_0247"
/note="C-terminal ACT (regulatory) domain of
D-3-phosphoglycerate dehydrogenase (3PGDH); Region:
ACT_3PGDH-xct; cd04902"
/db_xref="CDD:153174"
misc_feature complement(order(231297..231299,231351..231353,
231357..231359))
/locus_tag="Dester_0247"
/note="putative L-serine binding site [chemical binding];
other site"
/db_xref="CDD:153174"
gene complement(232883..233968)
/locus_tag="Dester_0248"
/db_xref="GeneID:10269460"
CDS complement(232883..233968)
/locus_tag="Dester_0248"
/note="KEGG: pmx:PERMA_1373 Tat pathway signal sequence
domain protein;
SPTR: Tat pathway signal sequence domain protein"
/codon_start=1
/transl_table=11
/product="Tat pathway signal sequence domain-containing
protein"
/protein_id="YP_004280964.1"
/db_xref="GI:325294450"
/db_xref="GeneID:10269460"
/translation="MENLGRREFIKGIWVSTLLPFIPQNAFGTVRKGIHVTLPEIKFQ
TTYLQGKRKGGRILLIGGIHGNEPGAYKSAEILRQVKVEKGELFIAPRSNFISILANV
RGYNGDMNRKFAKLSKKDPDYPYVLKLKKLIKEIKPDVVLSLHDGFGFHILNKRFWGQ
CIVIDEERYKNFELGKIARTVSRLVNNKIRNKKWLIPVFNTHTFSKNTKHPEQRRSLT
YYCLSKCNTQAYCLEASKQLPNLETKVKTHLLMLKEFFRIFNLEIKPDFDFLIENCER
MLNERKTYTANLKINGRKIIISSNKAIKVPSKSEVEFLSFHGSDGTNVIPVGVNLNWR
KFTIRDSLSLKIKDDYLDIFKVKLILI"
sig_peptide complement(233891..233968)
/locus_tag="Dester_0248"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(233246..233779)
/locus_tag="Dester_0248"
/note="M14 family of metallocarboxypeptidases and related
proteins; Region: Peptidase_M14_like; cd00596"
/db_xref="CDD:199839"
misc_feature complement(order(233270..233272,233510..233512,
233531..233536,233636..233641,233660..233662,
233768..233770,233777..233779))
/locus_tag="Dester_0248"
/note="active site"
/db_xref="CDD:199839"
misc_feature complement(order(233534..233536,233768..233770,
233777..233779))
/locus_tag="Dester_0248"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:199839"
gene complement(233938..234999)
/locus_tag="Dester_0249"
/db_xref="GeneID:10269461"
CDS complement(233938..234999)
/locus_tag="Dester_0249"
/note="COGs: COG3034 conserved hypothetical protein;
InterPro IPR005490;
KEGG: pmx:PERMA_1371 hypothetical protein;
PFAM: YkuD domain;
SPTR: uncharacterized protein;
PFAM: L,D-transpeptidase catalytic domain"
/codon_start=1
/transl_table=11
/product="ErfK/YbiS/YcfS/YnhG family protein"
/protein_id="YP_004280965.1"
/db_xref="GI:325294451"
/db_xref="GeneID:10269461"
/translation="MLKFLLVFLLAFSFLTARGESLYGLVKKLDTLTPEEISKEIRNL
SPEERFKLQLLLFSYAGESKEVRKLIKKAYPKRLISNVLILPPSINAIIVDKTREILY
VIKMDKSIPHVIKKFPCITGKKLGDKLEEGDLRTPEGIYFPLYWRTNLPKLYGIGAFP
LNYPNLIDKKVLKRNGHGIWIHGTNDPNRPPHSTNGCIVLKNEYLKELKKLIDPKLTP
VIVVTTVNYVERKKYINEKKSILSFILRWKKAWENTPKNLKSYFSFYSKHFVWKKGNY
KDWIRYKKRITKQKKWIKIKIFNLSLSKDGRVLQFGNLYVANIDFEYKSNNFHSKGKK
LLYIVREGKQWKILGEENL"
sig_peptide complement(234943..234999)
/locus_tag="Dester_0249"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(234337..234726)
/locus_tag="Dester_0249"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:217702"
misc_feature complement(235040..237119)
/note="potential frameshift: common BLAST hit:
gi|170289898|ref|YP_001736714.1| anaerobic
ribonucleoside-triphosphate reductase"
gene complement(235040..235573)
/locus_tag="Dester_0250"
/db_xref="GeneID:10269462"
CDS complement(235040..235573)
/locus_tag="Dester_0250"
/note="COGs: COG1328 Oxygen-sensitive
ribonucleoside-triphosphate reductase;
KEGG: sul:SYO3AOP1_1315 anaerobic
ribonucleoside-triphosphate reductase;
SPTR: Anaerobic ribonucleoside-triphosphate reductase"
/codon_start=1
/transl_table=11
/product="anaerobic ribonucleoside-triphosphate reductase"
/protein_id="YP_004280966.1"
/db_xref="GI:325294452"
/db_xref="GeneID:10269462"
/translation="METVKKVKAKIFVNGDPLSKRVFLTSGFQAPFQEGDLLRQIDVN
SHFQSYATGGSIFHIFTAEEMEPEEQERLIFNIIKNFPIQYLTKTPFLTTCNKCGHKM
VGRKTKCERCDSEDVTLWSRPIGYFRPVMRGKIEKNFKNAKYLFWLSGRIEDFATRKE
VKKKDVEEIVNELSSII"
misc_feature complement(235187..>235507)
/locus_tag="Dester_0250"
/note="Ribonucleotide reductase and Pyruvate formate
lyase; Region: RNR_PFL; cl09939"
/db_xref="CDD:245211"
gene complement(235575..237119)
/locus_tag="Dester_0251"
/db_xref="GeneID:10269463"
CDS complement(235575..237119)
/locus_tag="Dester_0251"
/note="COGs: COG1328 Oxygen-sensitive
ribonucleoside-triphosphate reductase;
KEGG: sul:SYO3AOP1_1315 anaerobic
ribonucleoside-triphosphate reductase;
SPTR: Anaerobic ribonucleoside triphosphate reductase"
/codon_start=1
/transl_table=11
/product="anaerobic ribonucleoside-triphosphate reductase"
/protein_id="YP_004280967.1"
/db_xref="GI:325294453"
/db_xref="GeneID:10269463"
/translation="MHNKYFKLIDLFIENDDISRNNANFVRGVPVLEHVVTGEVMKDY
LFDVVYKGLPVRIHHEEGWAYHHQTYRLSAYCIGLSAKDIAFYGLRSNAKNERRAAPP
KRLETLFMQCANLICLIAQEVSGATSLNDLSTVAAGYLYHLEKIEKKTYSDYELENLW
QEFLYNINLPFRSGNSPFSNITLDFGKPNSRLKHEPIVYAGQLLDITYNQIPSHYFDR
INTAFIKAMRKGDADGNPFTFPLITVNVTEDFDRNNPAWKLLLKESEYFGGFYIQNYL
KEPFEKPSIYREKNPYIKPFDEGMIYSNCCRMLFDISQVEAVTGSNPFHSGSGVGGIG
VYAINMNRLLFLAKEDFELLKRMIDYTMDIGAQALQRKRVWLKKHWKDLYPYLSFYQK
DDHSLFNIFSVVGVHEGMVNAGFEGGLFNDDAKEYAHEIAQYLYQKLHQFMEKDRVLY
SLEYAPSENAACRMAEKDLQFANAVADILNGEKSPEISNDPILNQFIRESLEKFGERI
FEVVGG"
misc_feature complement(<235710..237014)
/locus_tag="Dester_0251"
/note="Ribonucleotide reductase and Pyruvate formate
lyase; Region: RNR_PFL; cl09939"
/db_xref="CDD:245211"
gene complement(237119..237787)
/locus_tag="Dester_0252"
/db_xref="GeneID:10269464"
CDS complement(237119..237787)
/locus_tag="Dester_0252"
/note="COGs: COG1180 Pyruvate-formate lyase-activating
enzyme;
InterPro IPR007197;
KEGG: cth:Cthe_0647 anaerobic ribonucleoside-triphosphate
reductase activating protein;
PFAM: Radical SAM;
SPTR: Anaerobic ribonucleoside-triphosphate reductase
activating protein;
manually curated;
PFAM: Radical SAM superfamily"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_004280968.1"
/db_xref="GI:325294454"
/db_xref="GeneID:10269464"
/translation="MKVSLFLDVETPITFRDQPGIQSAVLYTEINLCNLNCYHCHNRH
GYNEYKGKKEKLSYKKLKEKLLMLKALGVELIIISGGEPTLEKKLEEGLRFIRSLGFS
VRVDTNGTNPEVIQRLIEKKVVNGFALDIKIPLKVRYTPQELKRFKRVLFSTEDVDDE
AVLNYSEKLMTSLEIIKKNPLQYTVFRTVEYPLLLEEDKNEIRKLLEFSPHQFNPFYP
VEEE"
misc_feature complement(237170..>237571)
/locus_tag="Dester_0252"
/note="anaerobic ribonucleoside-triphosphate reductase
activating protein; Region: NrdG2; TIGR02495"
/db_xref="CDD:233896"
gene complement(237787..239952)
/locus_tag="Dester_0253"
/db_xref="GeneID:10269465"
CDS complement(237787..239952)
/locus_tag="Dester_0253"
/EC_number="2.1.1.14"
/note="COGs: COG0620 methionine synthase II
(cobalamin-independent);
InterPro IPR013215: IPR002629;
KEGG: aae:aq_1710
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase;
PFAM: methionine synthase, vitamin-B12 independent;
Cobalamin (vitamin B12)-independent methionine synthase
MetE, N-terminal;
PRIAM:5-methyltetrahydropteroyltriglutamate--homocy
steineS-methyltransferase;
SPTR:5-methyltetrahydropteroyltriglutamate--homocys
teinemethyltransferase;
PFAM: Cobalamin-independent synthase, N-terminal domain;
Cobalamin-independent synthase, Catalytic domain;
TIGRFAM:
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase"
/codon_start=1
/transl_table=11
/product="5-
methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase"
/protein_id="YP_004280969.1"
/db_xref="GI:325294455"
/db_xref="GeneID:10269465"
/translation="MKTYAYGFPRLGKQREFKRLIEGYWAQKVTEEELLTGIKELNRK
REETYQKYVNAHPQGEMTLYDPMLDMALLFGVYKAETLDEYFNLCRGKDALEMTKWFN
TNYHYLVPDFEGKKPCFKVTTPVWNRHEGARENVHLIAPFTFLKLSKNLPQEYFEEAL
KELTEIVVQYINEKGFESVHLEDPALVMELTEKEWNLIQDAYKSFEKANAEINIFTYY
DSVDCLQKLFDLPVSGVGVDFAHDRGENLAQLREIDPKGKKLFAGVVDGRNVWRNDLF
KTAEVISELSKKFDVVVTNAAPLFHLPVNLLGVTLPEELLKKVAFAEEKLKELQLISQ
ILSGDEAEAKEWVAELESSFGEITKVRERVKSLKEEDFVRKPSYQERIKKQQEVLNLP
LFPTTTIGSFPQTEEVRRVRLLYKKGRLSEEDYKTFIRGEIAKAIQIQEDLDIDVFVH
GEFERTDMVEFFAEKMKGIATTGNGWVISYGTRCYRPPIIYGDVERDGQMTISEIVFA
QSLTEKPVKGMLTGPVTIIAWSYVREDIPTSEVAYQIALALKDEIKDYEKAGIKIVQI
DEPAIREKAPIKKRNWDEYFDWAIKSFRLCHSSVKPETQIHTHMCYSEFGEIINYIVD
MDFDVISIEASRSKGDIIETFEKVAFDRQIGLGVWDIHSPYVPSLEEMEVIVERALKV
IPKENFWINPDCGLKTRRWEEVIPALKNMITVARKLRKT"
misc_feature complement(237793..239952)
/locus_tag="Dester_0253"
/note="5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase; Provisional; Region: PRK05222"
/db_xref="CDD:235367"
misc_feature complement(238948..239949)
/locus_tag="Dester_0253"
/note="The URO-D_CIMS_like protein superfamily includes
bacterial and eukaryotic uroporphyrinogen decarboxylases
(URO-D), coenzyme M methyltransferases and other putative
bacterial methyltransferases, as well as cobalamine (B12)
independent methionine synthases; Region: URO-D_CIMS_like;
cl00464"
/db_xref="CDD:241881"
misc_feature complement(237805..238770)
/locus_tag="Dester_0253"
/note="CIMS - Cobalamine-independent methonine synthase,
or MetE, C-terminal domain_like. Many members have been
characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria and
plants. This enzyme...; Region: CIMS_C_terminal_like;
cd03311"
/db_xref="CDD:239427"
misc_feature complement(order(237868..237873,238120..238122,
238126..238128,238252..238254,238258..238260,
238579..238581,238597..238599,238750..238758))
/locus_tag="Dester_0253"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:239427"
misc_feature complement(order(238246..238248,238366..238368,
238498..238506))
/locus_tag="Dester_0253"
/note="THF binding site; other site"
/db_xref="CDD:239427"
misc_feature complement(order(237871..237873,238054..238056,
238120..238122,238126..238128))
/locus_tag="Dester_0253"
/note="zinc-binding site [ion binding]; other site"
/db_xref="CDD:239427"
gene 240354..240563
/locus_tag="Dester_0254"
/db_xref="GeneID:10269466"
CDS 240354..240563
/locus_tag="Dester_0254"
/note="KEGG: ape:APE_0900.1 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: Acetyltransferase (GNAT) family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280970.1"
/db_xref="GI:325294456"
/db_xref="GeneID:10269466"
/translation="MEIKVKVKNGKVYTELKSGEEAFITFRELEERKVIIVTTTYVPV
NYRGKGIAAKLSEKLVEFAEKKTIR"
misc_feature 240363..>240551
/locus_tag="Dester_0254"
/note="Predicted acetyltransferase [General function
prediction only]; Region: COG2388"
/db_xref="CDD:225261"
gene 240637..241419
/locus_tag="Dester_0255"
/db_xref="GeneID:10269467"
CDS 240637..241419
/locus_tag="Dester_0255"
/note="KEGG: fno:Fnod_1767 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: Protein of unknown function (DUF548)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280971.1"
/db_xref="GI:325294457"
/db_xref="GeneID:10269467"
/translation="MEVVVTTDRKPTPEMRSEGKKLSKELKTVYVKRRHRTIESIKKE
FGKNVLVVGKDLNLTLHTLNGKKLFFHPGLFKIRLLNYISTGYEAMIEAMDLKEGETV
LDCNLGLAQDALLSAFVSKREVIGIEKEPVIYEIVKRGLKTYKPRGKLKTAEFAFSLV
KPFKGDNYQFLKQQPDKSYDVVYFSPMFIKPKWHCDVMAPFREVAVKDFISPETLKEA
ERVARKRVVIKVNKGVKDLFPYLSDYQLKESSTNVEYLYKIL"
misc_feature <240898..241323
/locus_tag="Dester_0255"
/note="Putative SAM-dependent methyltransferase; Region:
SAM_MT; cl17517"
/db_xref="CDD:248071"
gene 241637..243934
/locus_tag="Dester_0256"
/db_xref="GeneID:10269468"
CDS 241637..243934
/locus_tag="Dester_0256"
/note="InterPro IPR005144: IPR013509: IPR000788:
IPR013346;
KEGG: cyt:cce_1354 ribonucleoside-diphosphate reductase
alpha subunit;
PFAM: ribonucleotide reductase large subunit, C-terminal;
ribonucleotide reductase large subunit, N-terminal;
ATP-cone;
SPTR: ribonucleoside-diphosphate reductase;
TIGRFAM: ribonucleoside-diphosphate reductase, alpha
subunit;
PFAM: ribonucleotide reductase, all-alpha domain; ATP cone
domain; ribonucleotide reductase, barrel domain;
TIGRFAM: ribonucleoside-diphosphate reductase, alpha
subunit"
/codon_start=1
/transl_table=11
/product="ribonucleoside-diphosphate reductase subunit
alpha"
/protein_id="YP_004280972.1"
/db_xref="GI:325294458"
/db_xref="GeneID:10269468"
/translation="MRKISVVKRNGSKEPLNIEKIRKVINWAAKGLEVNTLKLESKLK
LHFYDGITTREIHKSIVNTALQLTTPEEPDWRILAGRLFIFNLYKEVSIKRGTSKLAY
IGGGKEYLKVLKDLVEKGLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAK
RYLCIYEDYPIELPQEMYMSIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILI
NLRRPNGNLSSCFITAMDDSLDSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKV
FGASGGVVPWIRILNDIAVAVNQEGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRK
AFDIFPQVVIPDLFMERVKKDKDWLLVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKE
SYKLKLKKKVKAKELLKEILKTQVATGLPYIFFKDTANRLNPLKHDGYIGNGNLCMES
FSNFRPSKSFKTTLEKGKIVSKVEKPGLVHTCNLLSINLANIENDKELEDVVRTAVRI
LDNTIDLTTSPILESKLHNDRYRTIGIGTLGLADYLAKREIPYGKQSLNLIDELYEKI
AYYGIDESINLAKERGKFQAFEGSDWSRGIIIGKDREYLLKKTHLKEKWLTVLEKLKK
YGIRNGQLFAIAPNTSSGLLQGATPGVLPPFSRFYIDKNQKQAVPICPPYLKKKFWFY
RESKFLNQKEVIDVISTIQRWVDSGISMELLFNLNLGVRAKDIFETVIYAWEKGIKTI
YYVRTIQKDSQTAISKKEECVACAN"
misc_feature 241646..243871
/locus_tag="Dester_0256"
/note="ribonucleotide-diphosphate reductase subunit alpha;
Validated; Region: PRK07088"
/db_xref="CDD:180831"
misc_feature 241646..241906
/locus_tag="Dester_0256"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:217585"
misc_feature 242156..243871
/locus_tag="Dester_0256"
/note="Class I ribonucleotide reductase; Region: RNR_I;
cd01679"
/db_xref="CDD:153088"
misc_feature order(242276..242281,242321..242326,242408..242410,
242969..242971,242975..242977,242981..242983,
243086..243088,243542..243559)
/locus_tag="Dester_0256"
/note="active site"
/db_xref="CDD:153088"
misc_feature order(242312..242314,242351..242356,242363..242365,
242372..242377,242384..242389,242396..242398,
242441..242443,242477..242479,242489..242494,
242498..242503,242510..242515,242522..242536)
/locus_tag="Dester_0256"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153088"
misc_feature order(242324..242326,242969..242971,242975..242977,
242981..242983,243080..243082,243857..243862)
/locus_tag="Dester_0256"
/note="catalytic residues [active]"
/db_xref="CDD:153088"
misc_feature order(242345..242353,242360..242362,242396..242398,
242435..242437,242477..242479,242492..242494)
/locus_tag="Dester_0256"
/note="effector binding site; other site"
/db_xref="CDD:153088"
misc_feature order(242672..242674,242681..242686,242690..242698,
242861..242863,242882..242884,243797..243805,
243809..243814,243824..243829,243833..243838)
/locus_tag="Dester_0256"
/note="R2 peptide binding site; other site"
/db_xref="CDD:153088"
gene 243950..245008
/locus_tag="Dester_0257"
/db_xref="GeneID:10269469"
CDS 243950..245008
/locus_tag="Dester_0257"
/note="COGs: COG0208 ribonucleotide reductase beta
subunit;
InterPro IPR000358;
KEGG: fnu:FN0103 ribonucleoside-diphosphate reductase beta
chain;
PFAM: ribonucleotide reductase;
SPTR: ribonucleoside-diphosphate reductase subunit beta;
PFAM: ribonucleotide reductase, small chain"
/codon_start=1
/transl_table=11
/product="ribonucleotide reductase"
/protein_id="YP_004280973.1"
/db_xref="GI:325294459"
/db_xref="GeneID:10269469"
/translation="MADIRKELMKPRPIFNPNGNDDPTKRGILYGNTTNIFNLNDVKY
EWATKLYRVMMANFWIPETVDLTQDVLDYKELTEDERQAYDEILSFLVFLDSIQTTNI
PNIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVIPPQHRETVYYWWKKDPILFE
RNKYIADIYQKFLEEPTMENYGEVLVGNYLLEGLYFYNGFMFFYNLASRNLMQGTADI
IRYINRDELTHVILFEHFMKDLTDEEFKKYLPKDKIYEMFKVAVNQEQRFSKKVIGNK
ILGMNEKSIEEYTYYVANKRLKALGLDPIFPDTPNPYEHLERIADTGGEGNVKANFFE
ATVTSYNQASAVEGWDEI"
misc_feature 244028..245002
/locus_tag="Dester_0257"
/note="ribonucleotide-diphosphate reductase subunit beta;
Provisional; Region: nrdF2; PRK13966"
/db_xref="CDD:140022"
misc_feature 244058..244912
/locus_tag="Dester_0257"
/note="Ribonucleotide Reductase, R2/beta subunit,
ferritin-like diiron-binding domain; Region: RNRR2;
cd01049"
/db_xref="CDD:153108"
misc_feature order(244058..244060,244091..244093,244112..244114,
244304..244309,244316..244318,244325..244330,
244337..244339,244346..244348,244394..244399,
244406..244408)
/locus_tag="Dester_0257"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153108"
misc_feature order(244124..244126,244232..244234,244322..244324,
244331..244333,244343..244345,244619..244624,
244634..244636)
/locus_tag="Dester_0257"
/note="putative radical transfer pathway; other site"
/db_xref="CDD:153108"
misc_feature order(244232..244234,244322..244324,244331..244333,
244523..244525,244625..244627,244634..244636)
/locus_tag="Dester_0257"
/note="diiron center [ion binding]; other site"
/db_xref="CDD:153108"
misc_feature 244343..244345
/locus_tag="Dester_0257"
/note="tyrosyl radical; other site"
/db_xref="CDD:153108"
gene 245081..245734
/locus_tag="Dester_0258"
/db_xref="GeneID:10269470"
CDS 245081..245734
/locus_tag="Dester_0258"
/note="COGs: COG0406 Fructose-2 6-bisphosphatase;
InterPro IPR013078;
KEGG: cyc:PCC7424_1967 phosphoglycerate mutase;
PFAM: histidine phosphatase superfamily, clade-1;
SPTR: phosphoglycerate mutase;
PFAM: phosphoglycerate mutase family"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_004280974.1"
/db_xref="GI:325294460"
/db_xref="GeneID:10269470"
/translation="MPRIILVRHGKTVWNAEGRYQGKMDIPLNEEGKEQARRVGEALK
DFPVKAVYSSPLSRCKDTALEIAKHHNLPVEERDGFKEIDHGEWEGMLASEVQEKYPE
LFKLWKAKPAEVRMPGEGGESLQDVYDRAVKAFEEIVSKHSNDDLIVIVGHDATNKVI
MCYLLGVDLNKFWAFKQANCGITVLEYDPETKKVVVHVANATGHLGKEIDFEIQKSL"
misc_feature 245087..245668
/locus_tag="Dester_0258"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(245102..245107,245252..245254,245537..245542)
/locus_tag="Dester_0258"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene 245831..246256
/locus_tag="Dester_0259"
/db_xref="GeneID:10269471"
CDS 245831..246256
/locus_tag="Dester_0259"
/note="COGs: COG1321 Mn-dependent transcriptional
regulator protein;
InterPro IPR001367;
KEGG: tko:TK0107 manganese-dependent transcription
regulator;
PFAM: Iron dependent repressor;
SMART: Iron dependent repressor;
SPTR: Manganese-dependent transcription regulator;
PFAM: Iron dependent repressor, metal binding and
dimerisation domain; Iron dependent repressor, N-terminal
DNA binding domain"
/codon_start=1
/transl_table=11
/product="DtxR family iron (metal) dependent repressor"
/protein_id="YP_004280975.1"
/db_xref="GI:325294461"
/db_xref="GeneID:10269471"
/translation="MTNEKLAPRLEDYLETIYLLEKKNGVARVKEIANERSVKMPTVT
DVLRRLSERGYILYEPYGYVRTTEKGREYAENLYKKHEVLKDFMKTVLQLPPEIAEKE
GCLMEHHLSKETVRKIQKLVDFFREKGLSEEFKEFLWKG"
misc_feature 245852..246016
/locus_tag="Dester_0259"
/note="Iron dependent repressor, N-terminal DNA binding
domain; Region: Fe_dep_repress; pfam01325"
/db_xref="CDD:110335"
misc_feature 245915..246199
/locus_tag="Dester_0259"
/note="Helix-turn-helix diphteria tox regulatory element;
Region: HTH_DTXR; smart00529"
/db_xref="CDD:197774"
misc_feature 246029..246211
/locus_tag="Dester_0259"
/note="Iron dependent repressor, metal binding and
dimerisation domain; Region: Fe_dep_repr_C; pfam02742"
/db_xref="CDD:202369"
gene 246244..247359
/locus_tag="Dester_0260"
/db_xref="GeneID:10269472"
CDS 246244..247359
/locus_tag="Dester_0260"
/note="COGs: COG1060 Thiamine biosynthesis protein ThiH;
InterPro IPR007197: IPR020050: IPR006638;
KEGG: saf:SULAZ_0984 menaquinone biosynthesis protein,
family;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: menaquinone biosynthesis protein, family;
TIGRFAM: menaquinone biosynthesis protein; FO synthase,
subunit 2;
PFAM: Radical SAM superfamily;
TIGRFAM: menaquinone biosynthesis protein, SCO4494
family; radical SAM domain protein, CofH subfamily"
/codon_start=1
/transl_table=11
/product="menaquinone biosynthesis protein"
/protein_id="YP_004280976.1"
/db_xref="GI:325294462"
/db_xref="GeneID:10269472"
/translation="MEGMTNPFLVPEFVEDNSLIPIVEKILLGERLTFEDGIKLFKTN
DILTLGKLADFVNKKKNGNLVYFVVNRHINLTNLCIGNCKFCAFRRSKSDADSYELTI
DEVLKKIESFKGISEIHIVSGLHPEWSYDYYIELLREIKKNFPYVHIQAFTAEEIDHL
CRISGKDTEEVFCDLIEAGLGSLPGGGAEIFSEEIRKKLCPEKLSSDRYLEIHKIAHK
FGLKTNASILYGHIETYEDRVKHLLRLRELQDETGGFQAFISFAYHPKNTKLGGNFTT
GFDDLKMLSVARVLLDNFPHIRAFWIMLGEKLAQISLHFGVDDLDGTVIEESITHSAG
ANTGSFMPKERLIKLIKESGKIPVERDTNYNVIKVYD"
misc_feature 246307..247344
/locus_tag="Dester_0260"
/note="putative menaquinone biosynthesis protein, SCO4494
family; Region: mena_SCO4494; TIGR03700"
/db_xref="CDD:213851"
misc_feature 246460..246987
/locus_tag="Dester_0260"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(246478..246480,246484..246486,246490..246492,
246496..246504,246607..246609,246613..246618,
246697..246705,246802..246804,246925..246927)
/locus_tag="Dester_0260"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 247369..248484
/locus_tag="Dester_0261"
/db_xref="GeneID:10269473"
CDS 247369..248484
/locus_tag="Dester_0261"
/note="COGs: COG1060 Thiamine biosynthesis protein ThiH;
InterPro IPR007197: IPR020050: IPR006638;
KEGG: saf:SULAZ_0984 menaquinone biosynthesis protein,
family;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: menaquinone biosynthesis protein, family;
TIGRFAM: menaquinone biosynthesis protein; FO synthase,
subunit 2;
PFAM: Radical SAM superfamily;
TIGRFAM: menaquinone biosynthesis protein, SCO4494
family; radical SAM domain protein, CofH subfamily"
/codon_start=1
/transl_table=11
/product="menaquinone biosynthesis protein"
/protein_id="YP_004280977.1"
/db_xref="GI:325294463"
/db_xref="GeneID:10269473"
/translation="MEEVILSLVKDKNLFSIIEKIFYNKRLTFEDGIKLFNSFDLPIL
GLLGNYAAEKKNGKLAYFNVNVHITPTNICIGTCKFCAFRKKKGEDGAYELTIEKILE
KLRNYKEQNPGLTEVHIVGGLHPDWGYTEYIEIIRAVKESFPDIHIKAYTAEEIKYIA
EKGRKSIEETIKDLIEVGLGSIPGGGGEIFKKEVRKKICPDKISGEEYLKIHKTAHRF
GLKSNATMLFGHIESYKDRVDHLLKLREAQDETGGFQTFIPLAFHPLNTKIPGATYTT
GVDELKTIAVSRLLLDNFSHIKAYWIMLGEKVAQIALQFGADDIDGTVTEEDITQAAG
AKAGEYMPKSRLIKLIKEAGKIPVERDTLYNVIKIYD"
misc_feature 247417..248469
/locus_tag="Dester_0261"
/note="putative menaquinone biosynthesis protein, SCO4494
family; Region: mena_SCO4494; TIGR03700"
/db_xref="CDD:213851"
misc_feature 247570..248109
/locus_tag="Dester_0261"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(247588..247590,247594..247596,247600..247602,
247606..247614,247726..247728,247732..247734,
247819..247824,247852..247854,247924..247926,
248044..248046)
/locus_tag="Dester_0261"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 248674..249882
/locus_tag="Dester_0262"
/db_xref="GeneID:10269474"
CDS 248674..249882
/locus_tag="Dester_0262"
/note="COGs: COG0166 Glucose-6-phosphate isomerase;
InterPro IPR001672;
KEGG: pmx:PERMA_1557 glucose-6-phosphate isomerase;
PFAM: phosphoglucose isomerase (PGI);
SPTR: Glucose-6-phosphate isomerase;
PFAM: phosphoglucose isomerase"
/codon_start=1
/transl_table=11
/product="phosphoglucose isomerase"
/protein_id="YP_004280978.1"
/db_xref="GI:325294464"
/db_xref="GeneID:10269474"
/translation="MAVVFSFEGCNLPQLEVQKLISKYNLFNLVNEKEMPFIKSLQTN
LKEIKDVIGSLKNKFDTLVVVGMGGSSLGTKAIYNTLTCDEFNHGRKLVFFDNIDPTY
VKRCIDSLDWSKTVFAFISKSGKTLETVSLLNVIKEEFRKRRIANPGKQMIFIGDPGN
AFEKLSKENKAFFFPILPEIGGRFSVLTPVGLVPAEFIGYGTKELLDGARAVVESPKS
AIYLGVYKYLHYLRNRTISVMMMTYSNYLREFTEWYAQLWAESLGKDGKGQTPMKAIG
TSSQHSVLQLFMDGHDDKIYQFFIIENYREDVRLPERTEILDFIAGKKLSDIIKAEFE
GTVKALLSRKRPIIQVELDDLSPWNLGYLFMSYMVATVVIGKLMGVNPYGQPAVEVGK
KLAYEKLKKT"
misc_feature 248806..249267
/locus_tag="Dester_0262"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:240146"
misc_feature order(248872..248874,248878..248883,249034..249042,
249049..249051,249217..249219)
/locus_tag="Dester_0262"
/note="active site"
/db_xref="CDD:240146"
misc_feature order(248959..248970,249055..249057,249067..249069,
249076..249078)
/locus_tag="Dester_0262"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240146"
misc_feature 249388..249867
/locus_tag="Dester_0262"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:240147"
misc_feature order(249403..249405,249439..249441,249451..249453,
249460..249465,249493..249495,249499..249507,
249514..249519,249526..249531,249538..249540,
249646..249648,249652..249654,249676..249678,
249685..249687)
/locus_tag="Dester_0262"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240147"
misc_feature order(249439..249441,249451..249453)
/locus_tag="Dester_0262"
/note="active site"
/db_xref="CDD:240147"
gene complement(249892..250599)
/locus_tag="Dester_0263"
/db_xref="GeneID:10269475"
CDS complement(249892..250599)
/locus_tag="Dester_0263"
/note="COGs: COG0566 rRNA methylase;
InterPro IPR013123: IPR001537: IPR004441;
KEGG: hya:HY04AAS1_0313 RNA methyltransferase, TrmH
family, group 3;
PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose
methyltransferase, substrate binding;
SPTR: RNA methyltransferase, TrmH family, group 3;
TIGRFAM: RNA methyltransferase TrmH, group 3;
PFAM: SpoU rRNA methylase family; RNA 2'-O ribose
methyltransferase substrate binding;
TIGRFAM: rRNA methylase, , group 3"
/codon_start=1
/transl_table=11
/product="TrmH family RNA methyltransferase"
/protein_id="YP_004280979.1"
/db_xref="GI:325294465"
/db_xref="GeneID:10269475"
/translation="MGFIIWGRNTLEEAVKSGRTLEKVYLQYGHYFEPSFLNWLKEKG
IKFQWAKKQQLERLAKTKKHQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEP
QNLGAIARTVESFGGVGILLPEKNSAPINEIALKASSGALFHLMVSRVPSLNESLITF
KKLGGSIYAVETGGKDIRNINFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTP
SLNVSVAAGIAIWSMFT"
misc_feature complement(250375..250590)
/locus_tag="Dester_0263"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature complement(249895..250587)
/locus_tag="Dester_0263"
/note="rRNA methylase, putative, group 3; Region:
rRNA_methyl_3; TIGR00186"
/db_xref="CDD:129290"
misc_feature complement(249907..250329)
/locus_tag="Dester_0263"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:216010"
gene 250791..251804
/locus_tag="Dester_0264"
/db_xref="GeneID:10269476"
CDS 250791..251804
/locus_tag="Dester_0264"
/note="COGs: COG0348 polyferredoxin;
KEGG: glo:Glov_1050 4Fe-4S ferredoxin iron-sulfur binding
domain protein;
SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain
protein"
/codon_start=1
/transl_table=11
/product="4Fe-4S ferredoxin"
/protein_id="YP_004280980.1"
/db_xref="GI:325294466"
/db_xref="GeneID:10269476"
/translation="MKIQKLRFIVQTAFFLLIAYGIYKYYLFVFYGSNRPDFLDAFLP
IVGVYDIIMKIRTGITDPFHPAAMPIMLAVILITFILGKGFCSWICPVGTLLDYITWL
RNKLLFIKKIDNVGSKLKNWKYFFALDIPLRSLKYLILGWFLYNILLIPAQMMSMMAQ
NISAAADIELFKFWIDLFHGKENLFAAILVLILIFSFIIPRFWCKYLCPLGAFYGIFN
LFSLTHLRRSPKTCTQCKQCSNCLIGLTPYKTVEFNNSECVMCLQCKSKCTHDAMKLQ
ILGRNVPLWIYPFALIGVFIGIIGLFMAAGIWHSHLTMRDEAYLLLNHGFDVEWARNI
LMK"
misc_feature 250977..251111
/locus_tag="Dester_0264"
/note="4Fe-4S binding domain; Region: Fer4_5; pfam12801"
/db_xref="CDD:221777"
misc_feature 251481..251609
/locus_tag="Dester_0264"
/note="4Fe-4S dicluster domain; Region: Fer4_9; pfam13187"
/db_xref="CDD:221966"
gene complement(251857..253281)
/locus_tag="Dester_0265"
/db_xref="GeneID:10269477"
CDS complement(251857..253281)
/locus_tag="Dester_0265"
/note="InterPro IPR010095;
KEGG: aae:aq_1459 neutral protease;
PFAM: transposase, IS605 OrfB, C-terminal;
SPTR: Neutral protease;
TIGRFAM: transposase, IS605 OrfB, C-terminal;
manually curated;
PFAM: Probable transposase;
TIGRFAM: transposase, IS605 OrfB family, central region"
/codon_start=1
/transl_table=11
/product="transposase, IS605 OrfB family"
/protein_id="YP_004280981.1"
/db_xref="GI:325294467"
/db_xref="GeneID:10269477"
/translation="MSVTTTKKSVVNKLEKASKTFQQFKNLIYLCALEYYQNTKDLKP
FLSRTFLEKFVKGKEELLFENEKIKEWKKELENLWKEKIGSDTAKTLVGIVAKEFKTV
VGKWKKGEKSDLPKPKKLSSLYSFTLETNPNMLVDKRKLKGKKKSNHVVIRIGKDFGA
VKFKIPAGINVKHIKVSWSASGEVTYLISYEVPKSEVILNKEFFLSIDLGVKNLISAV
SNKEDLPSFIINGNPLKAFNQWVNKLSAKLQSEGKELEHKKLWNYRKKRINQLFGTVS
NFIVALCLKKGIGKVVISDSLTEEYQKEGTKGKRFNQTFRHIPLGKLIQKLEYKCRLA
GIEFLKEPETYTSQISAVTGNIEEISGKSKEELTEEDINKLQFTGKRVRRGLFKDLKI
SKVFNADLNGALNIAIKKLGKSVREKFLKLPNWIDKLSRAVKLTLFPHSKYSASPLFQ
GIADSSSYLTRGSEGHLLAIANEC"
misc_feature complement(252397..>252828)
/locus_tag="Dester_0265"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:216470"
misc_feature complement(252241..252492)
/locus_tag="Dester_0265"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:233563"
misc_feature complement(252061..252321)
/locus_tag="Dester_0265"
/note="Putative transposase DNA-binding domain; Region:
OrfB_Zn_ribbon; pfam07282"
/db_xref="CDD:115907"
gene complement(253262..253915)
/locus_tag="Dester_0266"
/db_xref="GeneID:10269478"
CDS complement(253262..253915)
/locus_tag="Dester_0266"
/note="COGs: COG2452 site-specific integrase-resolvase;
InterPro IPR000551: IPR006119;
KEGG: dau:Daud_1710 resolvase domain-containing protein;
PFAM: Resolvase, N-terminal; HTH transcriptional
regulator, MerR;
SPTR: Resolvase, N-terminal domain;
PFAM: Resolvase, N terminal domain;
TIGRFAM: DNA binding domain, excisionase family"
/codon_start=1
/transl_table=11
/product="Resolvase domain"
/protein_id="YP_004280982.1"
/db_xref="GI:325294468"
/db_xref="GeneID:10269478"
/translation="MKGTMRTSEFARRVGLHPQTVRAMVKRGELRPYITPSGQFRFTE
EHVKQVLGLKGIERKGKTVIYARVSTQKQRKYLENQVEACRNFLVSKGYSVDEVITDV
ASSFNFKRRELNKLLDECFNGEVGVICIYSKDRLSRIAYDLFEEILKRLGIEILIVDK
SEGLLTDEQLKDAVEEMISFIHYITSKIYSSRSYKRKKIEKCIKEVVNAPNDERNND"
sig_peptide complement(253847..253915)
/locus_tag="Dester_0266"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(253370..253903)
/locus_tag="Dester_0266"
/note="Predicted site-specific integrase-resolvase [DNA
replication, recombination, and repair]; Region: COG2452"
/db_xref="CDD:225296"
misc_feature complement(253760..253903)
/locus_tag="Dester_0266"
/note="Helix-Turn-Helix DNA binding domain of truncated
MerR-like proteins; Region: HTH_MerR-trunc; cd04762"
/db_xref="CDD:133390"
misc_feature complement(order(253796..253804,253850..253852,
253892..253900))
/locus_tag="Dester_0266"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133390"
misc_feature complement(253370..253732)
/locus_tag="Dester_0266"
/note="Serine Recombinase family, catalytic domain; a DNA
binding domain may be present either N- or C-terminal to
the catalytic domain. These enzymes perform site-specific
recombination of DNA molecules by a concerted, four-strand
cleavage and rejoining...; Region: Ser_Recombinase;
cl02788"
/db_xref="CDD:243186"
misc_feature complement(order(253502..253504,253511..253516,
253709..253711,253715..253717))
/locus_tag="Dester_0266"
/note="catalytic residues [active]"
/db_xref="CDD:238206"
misc_feature complement(253709..253711)
/locus_tag="Dester_0266"
/note="catalytic nucleophile [active]"
/db_xref="CDD:238206"
gene 253994..255010
/locus_tag="Dester_0267"
/db_xref="GeneID:10269479"
CDS 253994..255010
/locus_tag="Dester_0267"
/note="COGs: COG0536 GTPase;
HAMAP: GTPase obg;
InterPro IPR006169: IPR002917: IPR014100: IPR005225;
KEGG: pmx:PERMA_0490 GTPase ObgE;
PFAM: GTP1/OBG subdomain; GTP-binding protein,
HSR1-related;
SPTR: GTPase obg;
TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding
protein;
PFAM: GTPase of unknown function; GTP1/OBG;
TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein
domain"
/codon_start=1
/transl_table=11
/product="GTPase obg"
/protein_id="YP_004280983.1"
/db_xref="GI:325294469"
/db_xref="GeneID:10269479"
/translation="MAQFIDRAKIFVQGGHGGNGCVAFRREKFVPKGGPSGGNGGKGG
DVILEADRNVHTLLDFKYKRHYKAERGRHGEGNKRTGRSGEDLIIKVPVGTVVKDAET
GKVLGDLNKHGQRLIVAKGGRGGRGNAEFATPTRRTPDFAEPGEPGEERWVELELKLL
ADVGLIGFPNAGKSTFLSRVTAAKPEIADYPFTTLRPILGVAKVGDFSFVVADIPGLI
EGAHAGKGLGHEFLRHVERTKLLLHLIDLTDMTRDPKEAFEKINKELELYSLELTQKP
QIVVGTKIDALTDRSKIEELKNYFEKKGYPFFAVSAVTGEGMNELMWFVSKKLKELEV
EDVE"
misc_feature 254000..254968
/locus_tag="Dester_0267"
/note="GTPase CgtA; Reviewed; Region: obgE; PRK12299"
/db_xref="CDD:237048"
misc_feature 254003..254470
/locus_tag="Dester_0267"
/note="GTP1/OBG; Region: GTP1_OBG; pfam01018"
/db_xref="CDD:110047"
misc_feature 254474..254968
/locus_tag="Dester_0267"
/note="Obg GTPase; Region: Obg; cd01898"
/db_xref="CDD:206685"
misc_feature 254492..254515
/locus_tag="Dester_0267"
/note="G1 box; other site"
/db_xref="CDD:206685"
misc_feature order(254501..254518,254837..254842,254846..254848,
254924..254929)
/locus_tag="Dester_0267"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206685"
misc_feature 254537..254584
/locus_tag="Dester_0267"
/note="Switch I region; other site"
/db_xref="CDD:206685"
misc_feature 254573..254575
/locus_tag="Dester_0267"
/note="G2 box; other site"
/db_xref="CDD:206685"
misc_feature 254630..254641
/locus_tag="Dester_0267"
/note="G3 box; other site"
/db_xref="CDD:206685"
misc_feature order(254639..254662,254669..254707)
/locus_tag="Dester_0267"
/note="Switch II region; other site"
/db_xref="CDD:206685"
misc_feature 254837..254848
/locus_tag="Dester_0267"
/note="G4 box; other site"
/db_xref="CDD:206685"
misc_feature 254924..254932
/locus_tag="Dester_0267"
/note="G5 box; other site"
/db_xref="CDD:206685"
gene 255000..256064
/locus_tag="Dester_0268"
/db_xref="GeneID:10269480"
CDS 255000..256064
/locus_tag="Dester_0268"
/EC_number="2.7.2.11"
/note="COGs: COG0263 Glutamate 5-kinase;
HAMAP: Glutamate 5-kinase;
InterPro IPR001048: IPR002478: IPR005715;
KEGG: tmt:Tmath_1126 glutamate 5-kinase;
PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine
synthase/archaeosine transglycosylase;
SMART: Pseudouridine synthase/archaeosine
transglycosylase;
SPTR: Glutamate 5-kinase;
TIGRFAM: Glutamate 5-kinase, ProB-related;
PFAM: PUA domain; Amino acid kinase family;
TIGRFAM: glutamate 5-kinase"
/codon_start=1
/transl_table=11
/product="glutamate 5-kinase"
/protein_id="YP_004280984.1"
/db_xref="GI:325294470"
/db_xref="GeneID:10269480"
/translation="MLSNVKRIVVKVGSQLLSGDEGINRNFIKELAKQISILIENGKE
VVLVSSGAVLAGIKALKLNRKPFSLQEKQALSAIGQPYLMAEYREAFKSHGIEIAQVL
LTAEDLRSKERFINAKNTLNALMKFGALPIVNENDTVSVEEIKIGDNDNLSAHVSVVF
EADLLIMLTITNGLYDKDPNKYSNAKLIPIVENLEELKKICDFSGKTNFGTGGMWTKV
EAAAKASKKGIPVIIAGGKEKDVILRILKGEKIGTFFMPAKKLKAKTYRILYLMKPTG
KLYIDEGAVKAIVENGKSLLSRGIKKVEGSFRKGDAIEIFDTYGNLIGKGIVRCNSDE
IGSFRKTCVHRDDLVILKEN"
misc_feature 255000..256052
/locus_tag="Dester_0268"
/note="gamma-glutamyl kinase; Provisional; Region:
PRK05429"
/db_xref="CDD:235460"
misc_feature 255018..255764
/locus_tag="Dester_0268"
/note="AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes
glutamate-dependent ATP cleavage; G5K transfers the
terminal phosphoryl group of ATP to the gamma-carboxyl
group of glutamate, in the first and controlling step of
proline (and, in mammals, ornithine)...; Region:
AAK_G5K_ProB; cd04242"
/db_xref="CDD:239775"
misc_feature order(255042..255044,255504..255512,255519..255524,
255630..255632,255636..255638,255648..255650)
/locus_tag="Dester_0268"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239775"
misc_feature order(255114..255119,255126..255128,255216..255218,
255228..255230,255297..255299,255303..255305,
255345..255350,255366..255368,255375..255377,
255405..255407,255411..255416)
/locus_tag="Dester_0268"
/note="homotetrameric interface [polypeptide binding];
other site"
/db_xref="CDD:239775"
misc_feature 255150..255173
/locus_tag="Dester_0268"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:239775"
misc_feature order(255153..255155,255408..255410,255441..255443)
/locus_tag="Dester_0268"
/note="putative allosteric binding site; other site"
/db_xref="CDD:239775"
misc_feature 255825..>256004
/locus_tag="Dester_0268"
/note="PUA domain; Region: PUA; pfam01472"
/db_xref="CDD:201816"
gene complement(256070..256456)
/locus_tag="Dester_0269"
/db_xref="GeneID:10269481"
CDS complement(256070..256456)
/locus_tag="Dester_0269"
/note="COGs: COG2050 Uncharacterized protein possibly
involved in aromatic compounds catabolism;
InterPro IPR006683;
KEGG: pab:PAB1655 initiation factor EIf-2b alpha subunit
1;
PFAM: Thioesterase superfamily;
SPTR: PaaI related protein, phenylacetic acid
degradation-related protein;
PFAM: Thioesterase superfamily;
TIGRFAM: uncharacterized domain 1"
/codon_start=1
/transl_table=11
/product="thioesterase superfamily protein"
/protein_id="YP_004280985.1"
/db_xref="GI:325294471"
/db_xref="GeneID:10269481"
/translation="MEIKTHQKINQNLCGIPTKLSQGYAEVELTTTEEMAADDKGLVH
GGFIFGQADYAAMLSVNHPNVVLGGANVRFLKPVKVGEKVLAIAKVISEEGKKKIVEV
VVKRNDEEVFKGEFICFVLPTHVLDR"
misc_feature complement(<256193..256384)
/locus_tag="Dester_0269"
/note="The hotdog fold was initially identified in the E.
coli FabA (beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase) structure and subsequently in 4HBT
(4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
number of other seemingly unrelated...; Region: hot_dog;
cd03440"
/db_xref="CDD:239524"
misc_feature complement(order(256226..256237,256322..256327))
/locus_tag="Dester_0269"
/note="active site 2 [active]"
/db_xref="CDD:239524"
misc_feature complement(order(256253..256261,256295..256300,
256307..256309))
/locus_tag="Dester_0269"
/note="active site 1 [active]"
/db_xref="CDD:239524"
gene 256572..257657
/locus_tag="Dester_0270"
/db_xref="GeneID:10269482"
CDS 256572..257657
/locus_tag="Dester_0270"
/note="COGs: COG0216 Protein chain release factor A;
HAMAP: peptide chain release factor 1;
InterPro IPR005139: IPR000352: IPR004373;
KEGG: aae:aq_876 peptide chain release factor 1;
PFAM: Class I peptide chain release factor; peptide chain
release factor;
SPTR: peptide chain release factor RF-1;
TIGRFAM: peptide chain release factor 1;
PFAM: PCRF domain; RF-1 domain;
TIGRFAM: peptide chain release factor 1"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 1"
/protein_id="YP_004280986.1"
/db_xref="GI:325294472"
/db_xref="GeneID:10269482"
/translation="MEKAIIERLDRIVEKFKEIEESLGKPEIIADQKKFQALAKEHKE
LQPIYETYMEYKKTKQGIEEAIEIIESANEDELIELAKEEKKELEERLEQLEAELKKL
LIPKDPNDEKNVILEIRAGTGGEEAALFAQDLFRMYTRYAEKKGWKVEILSLNETGLG
GIKEVIATISGKGAYSRLKYESGVHRVQRIPVTESGGRIHTSAATVAILPEAEEVDIH
IDEKDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCSNERSQIQNRIKAMKIL
RARLKELYERQQKEQLDSARRSQIGSGDRSEKIRTYNFPENRVTDHRIKLTLYNLEEF
LDGELDEMIDALTAAEQAEKIEALARE"
misc_feature 256575..257648
/locus_tag="Dester_0270"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:234801"
misc_feature <256881..257114
/locus_tag="Dester_0270"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:214923"
misc_feature 257199..257540
/locus_tag="Dester_0270"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 257700..258854
/locus_tag="Dester_0271"
/db_xref="GeneID:10269483"
CDS 257700..258854
/locus_tag="Dester_0271"
/note="COGs: COG0535 Fe-S oxidoreductase;
InterPro IPR007197: IPR006638;
KEGG: ddf:DEFDS_1457 radical SAM domain protein;
PFAM: Radical SAM;
SMART: Elongator protein 3/MiaB/NifB;
SPTR: Radical SAM domain protein;
PFAM: Radical SAM superfamily"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_004280987.1"
/db_xref="GI:325294473"
/db_xref="GeneID:10269483"
/translation="MAIKEEFLPKWIAWEITRRCNLNCIHCRSSSTMESEQGDFSFED
GKKLMDDIAKISKPTIVLTGGEPLLREDVWDLAAYGTEKGFRMCIATNGVLVDDEVCK
EMKRVGIKMVSLSLDGSTAEIHDDFRKQPGAYEGVMKAAELFKKHDIPFLINSSFTKR
NAFDIPNVYKKAREIGARAWYMFLVLPVGRAEEANAELLNAEEAQYWLNWHYELEKEL
ILKGDNTILVRPTCAPHYYRIFNQNAKRDGLDLKRRNLVFGTGGGKGCVAGQSIAYID
CHGWLRPCSYFPISDINVFDVPFDRAWFESKIMQDMRKIEEYKGRCGVCEYVKICNGC
RVRAYWEHNDYMHEDPICKYVPVKMKVGIKHKGLLNKTPEKGDDIKDVTP"
misc_feature 257733..258767
/locus_tag="Dester_0271"
/note="putative heme d1 biosynthesis radical SAM protein
NirJ2; Region: rSAM_NirJ2; TIGR04055"
/db_xref="CDD:188570"
misc_feature 257739..>258161
/locus_tag="Dester_0271"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(257757..257759,257763..257765,257769..257771,
257775..257783,257886..257888,257892..257897,
257967..257975,258042..258044)
/locus_tag="Dester_0271"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 258495..258755
/locus_tag="Dester_0271"
/note="radical SAM additional 4Fe4S-binding SPASM domain;
Region: rSAM_more_4Fe4S; TIGR04085"
/db_xref="CDD:234461"
gene 258841..260148
/locus_tag="Dester_0272"
/db_xref="GeneID:10269484"
CDS 258841..260148
/locus_tag="Dester_0272"
/note="COGs: COG3547 transposase and inactivated
derivatives;
InterPro IPR003346;
KEGG: llo:LLO_2911 transposase;
PFAM: transposase, IS116/IS110/IS902;
SPTR: transposase;
PFAM: transposase IS116/IS110/IS902 family; transposase"
/codon_start=1
/transl_table=11
/product="transposase IS116/IS110/IS902 family protein"
/protein_id="YP_004280988.1"
/db_xref="GI:325294474"
/db_xref="GeneID:10269484"
/translation="MSPPEIRDYSKEATFKGRRLDFSLGNKPRAWRLADASCRLIIVA
GSAVLEYGNSPEAEVAKHKTYQGVEMKEKVEKTLYVGVDYHKNSFTAAYLDCLTGILN
TKKYEAEELEKFKNHLTTFRKKGYSVKVAVETLTGVTFFTEEIRNCVDEITYVNTNKF
KNILKGVNSAKNDRIDAETIAIYYEMGLLPTVYVPTRKEKELRIKMKERDSFVDMRKG
VINRLHSLLLEYGIKTNKRELTTKKGMERIKEETKKKVPPSLRETIWRQIETIEYLTD
KIRETEEDIKSFIGEDEELKGKVELLKSIPGVGDIVAIAFISAVCNEERFENGDKVAA
YFGLVPRVNSSGDEVRNGRITKKGDSRTRNKIIQATRALLNSKLDNSVKRFYEGLVKK
GLEKKKALIAAARKLVKVMFAVLRERRQFMDFVENKCNLCVGG"
misc_feature 259075..259506
/locus_tag="Dester_0272"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:216564"
misc_feature <259303..260001
/locus_tag="Dester_0272"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature 259735..260001
/locus_tag="Dester_0272"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene 260171..261211
/locus_tag="Dester_0273"
/db_xref="GeneID:10269485"
CDS 260171..261211
/locus_tag="Dester_0273"
/EC_number="4.1.1.37"
/note="COGs: COG0407 Uroporphyrinogen-III decarboxylase;
HAMAP: Uroporphyrinogen decarboxylase HemE;
InterPro IPR000257: IPR006361;
KEGG: chy:CHY_0483 uroporphyrinogen decarboxylase;
PFAM: Uroporphyrinogen decarboxylase (URO-D);
PRIAM: Uroporphyrinogen decarboxylase;
SPTR: Uroporphyrinogen decarboxylase;
TIGRFAM: Uroporphyrinogen decarboxylase HemE;
PFAM: Uroporphyrinogen decarboxylase (URO-D);
TIGRFAM: uroporphyrinogen decarboxylase"
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="YP_004280989.1"
/db_xref="GI:325294475"
/db_xref="GeneID:10269485"
/translation="MKDHPILKAARGEKTDYTPIWIMRQAGRYSERYRKIRAQAGSFM
ELCKNPKLAAEVTLIPIEEIGIDAAILFSDILVPLEKMGIDVSFVEGKGPILEPKAEK
LEDVEKLKIPEPEKDLPYVLETIQLIKKRLTDRPLIGFSGAPFTLASYMLEGGSSKNY
IAAKSTMWNEPELWDALMSKLAETVIEYLSSQIKAGVDLIQIFDSWMGVLSKDDYEKF
VFPYTERIVNELKKRYPEIPIIHFGVNAGHLLEVNNRLSVDVIGLDWKTEIPFALERI
DKSIQGNLDPVTLFADEKIIEERVRKILIEGLKARGHIFNLGHGILPPTDPKKAKFLV
DTVHKVSKELRG"
misc_feature 260186..261187
/locus_tag="Dester_0273"
/note="methylcobalamin:coenzyme M methyltransferase;
Validated; Region: PRK06252"
/db_xref="CDD:235753"
misc_feature 260189..261187
/locus_tag="Dester_0273"
/note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate side
chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction...; Region: URO-D;
cd00717"
/db_xref="CDD:238368"
misc_feature order(260237..260254,260267..260269,260279..260281,
260297..260299,260378..260398,260432..260434,
260447..260449,260588..260590,260618..260620,
260636..260638,260777..260779,260783..260788,
260894..260896,261125..261127)
/locus_tag="Dester_0273"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:238368"
misc_feature order(260240..260242,260252..260254,260390..260392,
260618..260620,260783..260785,261125..261127)
/locus_tag="Dester_0273"
/note="active site"
/db_xref="CDD:238368"
gene 261216..262109
/locus_tag="Dester_0274"
/db_xref="GeneID:10269486"
CDS 261216..262109
/locus_tag="Dester_0274"
/note="KEGG: aae:aq_1923 hypothetical protein;
SPTR: Uncharacterized protein aq_1923"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280990.1"
/db_xref="GI:325294476"
/db_xref="GeneID:10269486"
/translation="MRLRWLFTFILFVIAVISSYFALESYAEVKLKEKLDRKLSSLPL
DITYRKFDYKLLENTITIENLRASQLGYSIFANKIIVDLPISYRKKEIPENLHLKVEG
LEIPLKMPFISNFSKTLNLKEKTINFIPLNLDVSYAFDGSILKVEFLTSSPLFGELKT
VSYFTNITKQKLELLINGKADKEYTLKRIALAYFDLIYKDRGLVQNFLKKEAKQQGIS
VEEFKKKLIYTIESNSSSESVKKKIVFPLVSFIKNPSCLEVSLKPSEPISLKDATYLL
NENPEVFSLIEKLGLTLKTCN"
sig_peptide 261216..261281
/locus_tag="Dester_0274"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(262135..264030)
/locus_tag="Dester_0275"
/db_xref="GeneID:10269487"
CDS complement(262135..264030)
/locus_tag="Dester_0275"
/EC_number="6.2.1.1"
/note="COGs: COG0365 Acyl-coenzyme A
synthetase/AMP-(fatty) acid ligase;
InterPro IPR000873: IPR011904;
KEGG: mhu:Mhun_0352 acetate--CoA ligase;
PFAM: AMP-dependent synthetase/ligase;
PRIAM: Acetate--CoA ligase;
SPTR: Acetyl-coenzyme A synthetase;
TIGRFAM: Acetate--CoA ligase;
PFAM: Domain of unknown function (DUF3448); AMP-binding
enzyme;
TIGRFAM: acetate--CoA ligase"
/codon_start=1
/transl_table=11
/product="acetate/CoA ligase"
/protein_id="YP_004280991.1"
/db_xref="GI:325294477"
/db_xref="GeneID:10269487"
/translation="MSEERLEHLLKQEIVVQPPEEFIENANVKDYEAEYRKFEKDPEN
FWSSIAKELFWYERWKKVLEWNYPHARWFVGAKTNITVNALDRHVKNGKRNKVAFFWE
DELGNERVVTYGELYRLVNKLANALKKAGIKKGDRVVIYMPLVVEQIAAMLACARIGA
IHSVVYAGFSAPALKHRIEDAEAKIIITADVTIRRGRAIPLKRIVDEAIMELSFIKQV
VVLRRLEPKVDLIGEKEVDFYEFMNGCSDYCEPEVMDSEDPLFILYTSGSTGKPKGVL
HTTGGYMVGTYYSMKTVFDLKDNDVYWCTADPGWITGHSYIVYGPLIAGATQVIAEGA
PNYPDFGRWWRLIEKYGVNIFYTAPTAIRMFMKAGEEWPNKYDLSSLRLLGSVGEPIN
PEAWLWYYRVIGKERCPIIDTWWQTETGTVMITTIDSLPMKPGKAGKPVPGVVADVVD
KEGNPVKADKGGFLVVKYPWPSMMRTIWKNPKRYEQYWNTIPNCYTAGDVAVKDEDGY
IMILGRADDVINVSGHRIGTMEVESALVSHSAVAEAAVIGIPDPIKGEAIKAFVILKK
GYSSSEELVDSLKQHVKAELGAIAVPSKIEFVGKLPKTRSGKIMRRVLKAKELGIDPG
DLSTLED"
misc_feature complement(262138..263988)
/locus_tag="Dester_0275"
/note="acetyl-CoA synthetase; Provisional; Region:
PRK00174"
/db_xref="CDD:234677"
misc_feature complement(262138..263928)
/locus_tag="Dester_0275"
/note="Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme); Region: ACS;
cd05966"
/db_xref="CDD:213313"
misc_feature complement(order(262264..262269,262282..262284,
262456..262467,262489..262491,262498..262500,
262534..262536,262780..262797,262861..262872,
262939..262941,262948..262953,263023..263031,
263095..263100,263113..263115,263434..263436,
263440..263442,263449..263451,263527..263535))
/locus_tag="Dester_0275"
/note="active site"
/db_xref="CDD:213313"
misc_feature complement(order(262267..262269,262282..262284,
262459..262467,262939..262941,262948..262953,
263023..263031,263095..263097,263113..263115,
263434..263436,263440..263442,263449..263451,
263527..263535))
/locus_tag="Dester_0275"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(263212..263217,263221..263238,
263245..263247))
/locus_tag="Dester_0275"
/note="acyl-activating enzyme (AAE) consensus motif; other
site"
/db_xref="CDD:213313"
misc_feature complement(order(262456..262458,262489..262491,
262498..262500,262534..262536,262780..262797,
262861..262872,263095..263100))
/locus_tag="Dester_0275"
/note="AMP binding site [chemical binding]; other site"
/db_xref="CDD:213313"
misc_feature complement(order(262786..262788,262867..262872,
263095..263100))
/locus_tag="Dester_0275"
/note="acetate binding site [chemical binding]; other
site"
/db_xref="CDD:213313"
gene 264198..265649
/locus_tag="Dester_0276"
/db_xref="GeneID:10269488"
CDS 264198..265649
/locus_tag="Dester_0276"
/note="InterPro IPR004477;
KEGG: pmx:PERMA_2021 competence protein;
PFAM: ComEC/Rec2-related protein;
SPTR: Competence protein;
TIGRFAM: ComEC/Rec2-related protein;
PFAM: Competence protein;
TIGRFAM: ComEC/Rec2-related protein"
/codon_start=1
/transl_table=11
/product="ComEC/Rec2-like protein"
/protein_id="YP_004280992.1"
/db_xref="GI:325294478"
/db_xref="GeneID:10269488"
/translation="MEKHTLYIFFLTFLIITLQSFGTPYFIFCVAVTFVLLTCYWIRF
KLVELLPGIVLSIFLLILLKLITPIENPQKVVWITENWNDEKIALLSNGSKVPIEEAK
IGDIVDETGKVIKRGNTLIYFFPNIRYELYKKLKESISFPISEVAGGITLGIRREIPD
SVKSYFLLSGLYPFLAISGLHISIVIGTIALLLKFLRIKKPLTKASLIALFFMPFTGL
PTSAVRAYLFTLFISLGVENYRKFSPFYLLGIILFIAAIGKNLSIGAVLSFLAVTGII
VALEFTESKIIRSLLLAIAPVLFTAPVVLSKFGTFNLLSFINSQIAGIIFIPFLITTF
LSEITFFKVNFINNLAEITGSFFLQFSKELFLLTKNFIFYSKLSLWISGITLGVMFLF
LLSKKNKLSFIPPVILLFYAFFLPTEINNKTFLLKGYKMNSFQFISKEGQSLRNCLIY
SDYVFPYAKKCLYKNKIFDKRVIIATKPKEVRK"
misc_feature 264645..>265148
/locus_tag="Dester_0276"
/note="Competence protein; Region: Competence; pfam03772"
/db_xref="CDD:217721"
gene 265646..266908
/locus_tag="Dester_0277"
/db_xref="GeneID:10269489"
CDS 265646..266908
/locus_tag="Dester_0277"
/EC_number="4.1.1.20"
/note="COGs: COG0019 diaminopimelate decarboxylase;
InterPro IPR000183: IPR002986;
KEGG: tye:THEYE_A1133 diaminopimelate decarboxylase;
PFAM: Orn/DAP/Arg decarboxylase 2;
PRIAM: diaminopimelate decarboxylase;
SPTR: diaminopimelate decarboxylase;
TIGRFAM: diaminopimelate decarboxylase;
PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet
domain; Pyridoxal-dependent decarboxylase, pyridoxal
binding domain;
TIGRFAM: diaminopimelate decarboxylase"
/codon_start=1
/transl_table=11
/product="diaminopimelate decarboxylase"
/protein_id="YP_004280993.1"
/db_xref="GI:325294479"
/db_xref="GeneID:10269489"
/translation="MREELFPFIYYENGKLKIDGISVEELARKYGTPLYVYSQSALEH
WFKEFDSAFSSIEHITCFAVKSNSNISVLKVLKELGAGADTVSMGEIFRALTAGIDPK
KIVFAGVGKRIDEIEYGLEKGILMFNVESESELYAINRVAEKLGKVAPIAFRVNPDVN
PKTHPYISTGLKTSKFGIAYEGAIELYKKAKNLKNINPIGIHFHIGSQITDVSVFGEA
ARKIKEIVKELYSVGIEIEYFDAGGGLGISYNPNEPPVPARALADEIIPIIKDLGCKL
ILEPGRRLAGNAGILLSQVIYKKERHEKLFYIVDAGMNDLARPSLYKAYHHIVPASKK
EGNLKKADVVGPICETGDILAEDRELPPLNEGDIIAVLSAGAYGFTMASNYNSRPRPA
EVIAKEGRAEIIRQRETLGDLISKEEIF"
misc_feature 265667..266896
/locus_tag="Dester_0277"
/note="diaminopimelate decarboxylase; Region: lysA;
TIGR01048"
/db_xref="CDD:233248"
misc_feature 265733..266830
/locus_tag="Dester_0277"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; Region:
PLPDE_III_DapDC; cd06828"
/db_xref="CDD:143501"
misc_feature order(265832..265834,265838..265840,265895..265897,
265964..265966,266105..266107,266249..266251,
266255..266257,266264..266266,266372..266377,
266480..266491,266597..266599,266609..266611,
266687..266689,266774..266776,266786..266788,
266798..266800)
/locus_tag="Dester_0277"
/note="active site"
/db_xref="CDD:143501"
misc_feature order(265832..265834,265838..265840,265895..265897,
265964..265966,266105..266107,266249..266251,
266255..266257,266264..266266,266372..266377,
266480..266491,266687..266689,266774..266776)
/locus_tag="Dester_0277"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143501"
misc_feature order(265838..265840,266255..266257,266264..266266,
266489..266491,266597..266599,266609..266611,
266687..266692,266774..266776,266786..266788,
266798..266800)
/locus_tag="Dester_0277"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143501"
misc_feature order(265838..265840,266687..266689)
/locus_tag="Dester_0277"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
misc_feature order(265853..265858,265901..265906,265910..265915,
265970..265978,265988..265990,266033..266035,
266042..266044,266165..266176,266534..266536,
266540..266542,266561..266563,266567..266569,
266678..266695,266699..266701,266783..266791,
266795..266806,266813..266815)
/locus_tag="Dester_0277"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143501"
gene complement(266882..267889)
/locus_tag="Dester_0278"
/db_xref="GeneID:10269490"
CDS complement(266882..267889)
/locus_tag="Dester_0278"
/note="InterPro IPR002559;
KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein;
PFAM: transposase, IS4-like;
SPTR: transposase IS4 family protein;
PFAM: transposase DDE domain"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_004280994.1"
/db_xref="GI:325294480"
/db_xref="GeneID:10269490"
/translation="MPKLRKKPILSGMKAKRLNFHKVLNLSKTYMNRRGQAVLVYLYP
FKTKRGRPKKYPDEIILTLLFLQVAWNLSFRDLEYLAVQIFGRENIPDFSTYYYRLKQ
LPSILLVDFLNFVSRRLLGKYHKELRFLIIDGTGFKYNEIYPLKILRGKEIKEVKSHV
KVVVLSVHLKDGKRFILTALPGESYASEVKLGEKIVRWLNERGFIWRALKGKPFLGDK
AYDSIKFIELVLLAGLKPYIKVRETLRKGIKSEIRLKCKELLESDEIYRFRGLIESIF
GEVKQDVGSYEKTKSFHIAQLFVLAKFILFNMGVLFFVWMIFQTLSACIPYLKYFLFT
Y"
misc_feature complement(267473..>267748)
/locus_tag="Dester_0278"
/note="Transposase DDE domain; Region: DDE_Tnp_1_5;
pfam13737"
/db_xref="CDD:222354"
misc_feature complement(266966..>267265)
/locus_tag="Dester_0278"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
repeat_region 267992..268352
/note="CRISPR"
gene complement(268418..269473)
/locus_tag="Dester_0279"
/db_xref="GeneID:10269491"
CDS complement(268418..269473)
/locus_tag="Dester_0279"
/note="COGs: COG1055 Na+/H+ antiporter NhaD and related
arsenite permease;
InterPro IPR004680;
KEGG: cte:CT1965 hypothetical protein;
PFAM: Divalent ion symporter;
SPTR: Membrane protein, ;
PFAM: Citrate transporter"
/codon_start=1
/transl_table=11
/product="citrate transporter"
/protein_id="YP_004280995.1"
/db_xref="GI:325294481"
/db_xref="GeneID:10269491"
/translation="MRTVKEIIIKEWFFLLSLLSFLLTSVCFFRIPHYSIDDFKILFT
LFVFLILTKGLEKSNFLKYLAIKVERGRFVPLKIVLFTAFISAFITNDVALIVIVPLT
LLMKIPKLELLIVLEAMAANSGSALSPFGNPQNIFIYYHYNLHFKEFVETIFPFVFVS
LILLILLTPKGKEKIKPMEEEVKYSRESYLLLFFFGTFILSVLKFIPLWVGILPIIYA
LFFNREILKINYFLLFTFFFFFGLTDNLVHTLNLRLENPTEVFLYSAIGSQIMSNVPA
TPFFADFTNQWKPLLWGVNVGGFGNLIGSLANLIVYKLYVEKFGNSKKIFIKFHVIGY
LFFIVGILTFFITTNLK"
misc_feature complement(268436..269314)
/locus_tag="Dester_0279"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl17221"
/db_xref="CDD:247775"
misc_feature complement(order(268436..268474,268556..268615,
268661..268708,268736..268792,268811..268855,
268868..268906,268970..269008,269072..269140,
269147..269164,269165..269197,269201..269251,
269306..269314))
/locus_tag="Dester_0279"
/note="transmembrane helices; other site"
/db_xref="CDD:238344"
misc_feature complement(268430..269311)
/locus_tag="Dester_0279"
/note="Na+/H+ antiporter NhaD and related arsenite
permeases [Inorganic ion transport and metabolism];
Region: ArsB; COG1055"
/db_xref="CDD:223983"
gene complement(269816..270517)
/locus_tag="Dester_0280"
/pseudo
/db_xref="GeneID:10269492"
gene 270942..271943
/locus_tag="Dester_0281"
/db_xref="GeneID:10269493"
CDS 270942..271943
/locus_tag="Dester_0281"
/note="KEGG: dat:HRM2_39060 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280996.1"
/db_xref="GI:325294482"
/db_xref="GeneID:10269493"
/translation="MIKKKRKEIIFSSILIIAVFIFRIFPSEIPYLDRKGDEYFEVAT
KKAVAAYATTRVLNAVVSVAKETEIEVAPLGLGMTVHLGQFLDPVDDATERLSTILTA
SIAALGLMKITKELLEIYTFKLISYLLFFLLPGLWIKSLRNFSRTILNIVTLLFAVRL
ALPICGIVNDFLYKDYFEPEINRALSVFGSVDEYEQKFSPQNISLDSIEFNDSGNYQS
QEERSFWNSVKDFNPLSKLNSIKEEIFSIWNSTKEKAQEFKEFLIYLWQHKGEFVEAI
GELIVLEVSMIVIQVIALPFAVIWMLTRLINVLFEKRLTLEDLVEVLDRVKLKEESN"
gene complement(272202..273236)
/locus_tag="Dester_0282"
/db_xref="GeneID:10269494"
CDS complement(272202..273236)
/locus_tag="Dester_0282"
/EC_number="2.4.2.18"
/note="COGs: COG0547 Anthranilate
phosphoribosyltransferase;
HAMAP: Anthranilate phosphoribosyl transferase;
InterPro IPR017459: IPR000312: IPR005940;
KEGG: saf:SULAZ_0181 anthranilate
phosphoribosyltransferase;
PFAM: Glycosyl transferase, family 3; Glycosyl
transferase, family 3, N-terminal;
PRIAM: Anthranilate phosphoribosyltransferase;
SPTR: Anthranilate phosphoribosyltransferase;
TIGRFAM: Anthranilate phosphoribosyl transferase;
PFAM: Glycosyl transferase family, a/b domain; Glycosyl
transferase family, helical bundle domain;
TIGRFAM: anthranilate phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="anthranilate phosphoribosyltransferase"
/protein_id="YP_004280997.1"
/db_xref="GI:325294483"
/db_xref="GeneID:10269494"
/translation="MEVKEVLNKLVEKQNLSFEATRNLFTQIMDGKLTDVQIAGILVA
LRSKGETTEEIAGATSVMREKSLKVPLSKDIRERIVDTCGTGGDLKGTFNISTTVALV
VAACGVPVAKHGNRSVSSKCGSADILEAFGVKIDLTPEQVAKCIGETNFGFMFAPRFH
PAMATVVRPRKELGIRTVFNLLGPMTNPAGAKRQLMGVFADYLTEKLAEVLLKLGTKK
AFIVHGKDGTDEITICDMTKITEISDGDIKSYIVSPEDFGIRKASFEELKGGETLEEN
REIVKKILTGEEKGAKRDVVLLNAAFALLAAEKVSSVEEGIELANSVIEEGKPYKLLL
KVVKVTNTFS"
misc_feature complement(272205..273236)
/locus_tag="Dester_0282"
/note="anthranilate phosphoribosyltransferase;
Provisional; Region: trpD; PRK00188"
/db_xref="CDD:234682"
misc_feature complement(273039..273227)
/locus_tag="Dester_0282"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
misc_feature complement(272247..273005)
/locus_tag="Dester_0282"
/note="Glycosyl transferase family, a/b domain; Region:
Glycos_transf_3; pfam00591"
/db_xref="CDD:216013"
gene complement(273252..273689)
/locus_tag="Dester_0283"
/db_xref="GeneID:10269495"
CDS complement(273252..273689)
/locus_tag="Dester_0283"
/note="COGs: COG1833 conserved hypothetical protein;
InterPro IPR002837: IPR000305;
KEGG: cyt:cce_5126 hypothetical protein;
PFAM: Protein of unknown function DUF123;
SMART: Excinuclease ABC, C subunit, N-terminal;
SPTR: endonuclease;
PFAM: Domain of unknown function DUF123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280998.1"
/db_xref="GI:325294484"
/db_xref="GeneID:10269495"
/translation="MSFNFELPETKGTYCILFVIDTLLFKVKSGKQFLLKKGVYVYVG
SAFGSGGLRKRISRHLRKKKKKHWHLDFISTDSSFKVLEIWIIEDRKLECSLANSISE
TEKPVIGFGSTDCNCPSHLFRVSEVENLRKRLLEKFNVKIFKI"
misc_feature complement(273324..273659)
/locus_tag="Dester_0283"
/note="GIY-YIG domain of hypothetical proteins from
archaea and their bacterial homologs; Region:
GIY-YIG_COG1833; cd10441"
/db_xref="CDD:198388"
misc_feature complement(order(273558..273566,273648..273656))
/locus_tag="Dester_0283"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198388"
misc_feature complement(order(273348..273350,273411..273413,
273513..273515,273525..273527,273558..273560,
273564..273566,273648..273650))
/locus_tag="Dester_0283"
/note="putative active site [active]"
/db_xref="CDD:198388"
misc_feature complement(273411..273413)
/locus_tag="Dester_0283"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:198388"
gene complement(273673..274137)
/locus_tag="Dester_0284"
/db_xref="GeneID:10269496"
CDS complement(273673..274137)
/locus_tag="Dester_0284"
/note="KEGG: pmx:PERMA_1991 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004280999.1"
/db_xref="GI:325294485"
/db_xref="GeneID:10269496"
/translation="MTDEAIRQKYNKLHSEIQKHLFRLKQAFEKLGALKELPIAAMDV
ADLLNKEEGVLLLDQIAYRFSKLQDSLGRLLRAYLTLKGENVEHLPIIDVINLLEKFG
FEITPEKWFELREIRNSIAHEYEDEYEKIAWTLNKIHSELPYLERLFNELQL"
gene complement(274134..274433)
/locus_tag="Dester_0285"
/db_xref="GeneID:10269497"
CDS complement(274134..274433)
/locus_tag="Dester_0285"
/note="InterPro IPR002934;
KEGG: pmx:PERMA_1990 DNA polymerase, beta domain protein
region;
PFAM: Nucleotidyltransferase;
SPTR: DNA polymerase, beta domain protein region;
PFAM: Nucleotidyltransferase domain"
/codon_start=1
/transl_table=11
/product="DNA polymerase beta domain-containing protein
region"
/protein_id="YP_004281000.1"
/db_xref="GI:325294486"
/db_xref="GeneID:10269497"
/translation="MAKVRLSDREVSAIKETAKDVFGEGTKIILFGSRADLSRKGGDI
DLYIVPEDKEDPFEKKLKFLIKLKQKIGDRKIDVIIQRDPERDIEKVAMLTGVEL"
misc_feature complement(274137..274412)
/locus_tag="Dester_0285"
/note="RelA- and SpoT-like ppGpp Synthetases and
Hydrolases, catalytic domain; Region: Rel-Spo_like;
cl11966"
/db_xref="CDD:245818"
misc_feature complement(order(274203..274205,274299..274301,
274305..274307))
/locus_tag="Dester_0285"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143387"
gene complement(274426..275796)
/locus_tag="Dester_0286"
/db_xref="GeneID:10269498"
CDS complement(274426..275796)
/locus_tag="Dester_0286"
/note="COGs: COG1232 Protoporphyrinogen oxidase;
InterPro IPR002937: IPR004572;
KEGG: gur:Gura_0144 protoporphyrinogen oxidase;
PFAM: Amine oxidase;
SPTR: Protoporphyrinogen oxidase;
TIGRFAM: Protoporphyrinogen oxidase;
PFAM: Flavin containing amine oxidoreductase;
TIGRFAM: protoporphyrinogen oxidase"
/codon_start=1
/transl_table=11
/product="protoporphyrinogen oxidase"
/protein_id="YP_004281001.1"
/db_xref="GI:325294487"
/db_xref="GeneID:10269498"
/translation="MKVAVIGAGISGLSVAFYLKKGGAEVKVFEKEKTVGGKMKTIHE
DGYIIETGPNGFLDGKPYTLNLVKELGIESKLYRSSDKARKRFIYTNGRLVRLPESPI
AFLASYLLSWKGKLRLVGEFLVPPKKEDIDESLSEFAKRRIGEEALEKLLDPMVAGIF
AGDPDRLSLKAAFPAIYYLEKQYGGLIKGLIAKMKEAKKSGKKSGPAGPGGVLTSFKG
GVKDLIDSLSEFLGDSIETEVEILGLDRIEKGWKVKYKKENEVFEETFDAIVFSTPAY
ITAKLLNDLNLELSKLLSEIEYSPISVVALGFEKKGLGHDLDGFGFLVPRSEKRKILG
ALWDSSVFPNRAPSGKALIRVMIGGARQPELALLPDEELVNIALKELRRIMKIRHYPE
KIKVFKHEKGIPHYTVGHAERVEKIFRLISKYPGLYLCNNAYTGVGVNDCTKAAEEVA
RRILDG"
misc_feature complement(274432..275796)
/locus_tag="Dester_0286"
/note="protoporphyrinogen oxidase; Reviewed; Region:
PRK11883"
/db_xref="CDD:237009"
misc_feature complement(275587..275784)
/locus_tag="Dester_0286"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene complement(275812..276738)
/locus_tag="Dester_0287"
/db_xref="GeneID:10269499"
CDS complement(275812..276738)
/locus_tag="Dester_0287"
/note="COGs: COG0276 Protoheme ferro-lyase
(ferrochelatase);
HAMAP: Ferrochelatase;
InterPro IPR001015;
KEGG: pmx:PERMA_1671 ferrochelatase;
PFAM: Ferrochelatase;
SPTR: Ferrochelatase;
TIGRFAM: Ferrochelatase;
PFAM: Ferrochelatase;
TIGRFAM: ferrochelatase"
/codon_start=1
/transl_table=11
/product="ferrochelatase"
/protein_id="YP_004281002.1"
/db_xref="GI:325294488"
/db_xref="GeneID:10269499"
/translation="MREAILLTYMGAPSTLDEIKPFLFRLFSDRDLINFGVPAFLQKP
LAYLISTFRTPKVKPQYEAIGGGSPLVRYALDQANLLEKETGIKTFLGMLYSKPLLKE
VVKEIERYSPDRLYVLTLYPQYSVATAGACFRDVEKFLSKKINYTFIKSWCRNSYYIE
WIQKSIGKELKDLKEPFILFSAHSLPKYIVENGDIYVNEIEDTVKLVMEKFKEIPYKI
SYQSKVGPIKWLEPSTEEVLKELKEEKRKEVLVFPISFISEHIETLYELDVEYGELAN
ELGLNYKRVKLDHKNLLLIKALSSEIDKLRKE"
misc_feature complement(275884..276735)
/locus_tag="Dester_0287"
/note="Ferrochelatase; Region: Ferrochelatase; pfam00762"
/db_xref="CDD:216106"
misc_feature complement(276283..276729)
/locus_tag="Dester_0287"
/note="Ferrochelatase, N-terminal domain: Ferrochelatase
(protoheme ferrolyase or HemH) is the terminal enzyme of
the heme biosynthetic pathway. It catalyzes the insertion
of ferrous iron into the protoporphyrin IX ring yielding
protoheme. This enzyme is...; Region: Ferrochelatase_N;
cd03411"
/db_xref="CDD:239504"
misc_feature complement(order(276286..276288,276361..276372,
276379..276381,276508..276510,276520..276522,
276547..276549,276559..276561,276712..276714))
/locus_tag="Dester_0287"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:239504"
misc_feature complement(order(276355..276360,276655..276663,
276673..276675,276709..276711))
/locus_tag="Dester_0287"
/note="active site"
/db_xref="CDD:239504"
misc_feature complement(275884..276273)
/locus_tag="Dester_0287"
/note="Ferrochelatase, C-terminal domain: Ferrochelatase
(protoheme ferrolyase or HemH) is the terminal enzyme of
the heme biosynthetic pathway. It catalyzes the insertion
of ferrous iron into the protoporphyrin IX ring yielding
protoheme. This enzyme is...; Region: Ferrochelatase_C;
cd00419"
/db_xref="CDD:238240"
misc_feature complement(order(275953..275955,276052..276054,
276175..276177,276190..276192))
/locus_tag="Dester_0287"
/note="active site"
/db_xref="CDD:238240"
misc_feature complement(order(275944..275946,275956..275958,
275962..275970,275974..275976,276130..276132,
276142..276144,276151..276159))
/locus_tag="Dester_0287"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:238240"
gene complement(276739..277152)
/locus_tag="Dester_0288"
/db_xref="GeneID:10269500"
CDS complement(276739..277152)
/locus_tag="Dester_0288"
/note="COGs: COG0432 conserved hypothetical protein;
InterPro IPR001602;
KEGG: aae:aq_2013 hypothetical protein;
PFAM: Uncharacterised protein family UPF0047;
SPTR: uncharacterized protein;
TIGRFAM: Uncharacterised protein family UPF0047;
PFAM: Uncharacterised protein family UPF0047;
TIGRFAM: secondary thiamine-phosphate synthase enzyme"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281003.1"
/db_xref="GI:325294489"
/db_xref="GeneID:10269500"
/translation="MKAYTEYLTFNTQKRRDLIRITDTVKEAVKKSGVKEGLCLVSAM
HLTAAVIIQDDEEGLHEDIWEWLERLAPFKPNYKHHRTGEDNGDAHLKNLLVHLQVVL
PITNGQLDLGPWQEIFYAEFDGQRPKRVIIKIIGD"
misc_feature complement(276745..277152)
/locus_tag="Dester_0288"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG0432"
/db_xref="CDD:223509"
gene 277253..278176
/locus_tag="Dester_0289"
/db_xref="GeneID:10269501"
CDS 277253..278176
/locus_tag="Dester_0289"
/EC_number="2.3.1.39"
/note="COGs: COG0331 ACP S-malonyltransferase;
InterPro IPR014043: IPR004410;
KEGG: pth:PTH_1743 ACP S-malonyltransferase;
PFAM: Acyl transferase;
PRIAM: ACP S-malonyltransferase;
SPTR: ACP S-malonyltransferase;
TIGRFAM: Malonyl CoA-acyl carrier protein transacylase;
PFAM: Acyl transferase domain;
TIGRFAM: malonyl CoA-acyl carrier protein transacylase"
/codon_start=1
/transl_table=11
/product="malonyl CoA-acyl carrier protein transacylase"
/protein_id="YP_004281004.1"
/db_xref="GI:325294490"
/db_xref="GeneID:10269501"
/translation="MAVAFIFPGQGSQYSGMGKELFDAFPEAREVFEEASEGAKVDIA
KLCFEAPEEKLTLTYNAQPAIFTLSMAILKVLEKAGFNEEPVLVAGHSLGEFSAAGAA
KVISIHDGALLVRKRGEFMQEAVPAGVGGMTAVIGLTSKKIEEVLKNVKSGFIQVANY
NSPEQTVISGEIKALEEAEEKLKEAGAKKVVRLAVSAPFHSELMKPAAEKLKELMEEI
EFKEAEVPILNNADVRIIKTPEEIRDSFYRQMFSPVRWVEDVLKMKEMGVDTFYEIGP
KNVLKGLIRRIDRSLKVINVEKPKDLEKFLS"
misc_feature 277253..278170
/locus_tag="Dester_0289"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:223408"
misc_feature 277253..278125
/locus_tag="Dester_0289"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:232839"
gene 278213..279436
/locus_tag="Dester_0290"
/db_xref="GeneID:10269502"
CDS 278213..279436
/locus_tag="Dester_0290"
/note="InterPro IPR005077;
KEGG: adg:Adeg_2154 peptidase C11 clostripain;
PFAM: peptidase C11, clostripain;
SPTR: uncharacterized protein;
PFAM: Clostripain family"
/codon_start=1
/transl_table=11
/product="peptidase C11 clostripain"
/protein_id="YP_004281005.1"
/db_xref="GI:325294491"
/db_xref="GeneID:10269502"
/translation="MKKLFFIAFLILSLFSCLILSLFSCGGGSGSFSERNWLVLIYMD
GDNSLSPFTNYDLQELGQVNYPQSVKVVVLVDKQNSIGGEIYESIDGKLQKVKDIPEP
NMGDPQTLVNFVKEYSDFYPAQNRALILWNHGDGWRSSGLDYADSRSAAEDLTNNDYL
FMFELKEALQQLKNDGYNLSLIGFDECLMGMTEVLYDIKDYANAFVASETFEPGDGWN
YTKVMAKLISNPNADAYTFGKYIVDAFKENYLNSLECSSNNGGCTLAVYTKEQIENIV
SKVNDIALSYSFGNFTDFYSARENATQIPGWNETIDLWSFADNLSSLTATIDLKNTID
SIYKALINTNLKGISIYFPKTYSSALDFECYSATVDNPRNCVINNITVNNYYNPFTEN
YWDDFLKIYYQDLGY"
sig_peptide 278213..278290
/locus_tag="Dester_0290"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 278333..279286
/locus_tag="Dester_0290"
/note="Clostripain family; Region: Peptidase_C11;
pfam03415"
/db_xref="CDD:217544"
gene 279447..279827
/locus_tag="Dester_0291"
/db_xref="GeneID:10269503"
CDS 279447..279827
/locus_tag="Dester_0291"
/note="KEGG: spo:SPAC23D3.13c guanyl-nucleotide exchange
factor (predicted);
SPTR: uncharacterized protein C1_0035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281006.1"
/db_xref="GI:325294492"
/db_xref="GeneID:10269503"
/translation="MKTKKLAFLFTLLITSFSCASFKVNGEATFRLETIGNILKRCNS
FENQKVTLRAKYMGWNCPAECKNPGITRSDSCIVDSTGCIYVRATGGLNPITDKRKEY
IFKGIVKKFKNICYLEVVEADETK"
sig_peptide 279447..279524
/locus_tag="Dester_0291"
/note="Signal predicted by SignalP 3.0 HMM"
gene 279814..280767
/locus_tag="Dester_0292"
/db_xref="GeneID:10269504"
CDS 279814..280767
/locus_tag="Dester_0292"
/EC_number="2.7.4.16"
/note="COGs: COG0611 Thiamine monophosphate kinase;
InterPro IPR000728: IPR010918: IPR006283;
KEGG: hth:HTH_1601 thiamine monophosphate kinase;
PFAM: AIR synthase related protein; AIR synthase related
protein, C-terminal;
PRIAM: Thiamine-phosphate kinase;
SPTR: Thiamine monophosphate kinase;
TIGRFAM: Thiamine-monophosphate kinase;
PFAM: AIR synthase related protein, N-terminal domain;
TIGRFAM: thiamine-monophosphate kinase"
/codon_start=1
/transl_table=11
/product="thiamine-monophosphate kinase"
/protein_id="YP_004281007.1"
/db_xref="GI:325294493"
/db_xref="GeneID:10269504"
/translation="MKLSEFELISKLTRKLSCPSEKVVVGIGDDAAVVKLNGSYQIIT
SDALVENSHYKREWINNFPELYYYLGRKLLSISISDVASMGGVPEFAIINLGVSNQSE
EELLEALYDGLSDACKDYRVSIVGGDTVASETEFFDSTLTGKSKGYMLRSLAKPKDLV
AVTGTFGDSRAGLEILLENKPIESYLVKRFLDPSARVKEGKEALTLGVQCGTDVSDGL
IFNLYTISESSNVKIDIFSEKIPISKELISYVGTRERALQYALFGGEDYELIITFPEK
LLNSIERIGFKVIGVVSEGNGVFLDGKRIKKVGFDHLRSVE"
misc_feature 279814..280749
/locus_tag="Dester_0292"
/note="thiamine monophosphate kinase; Provisional; Region:
PRK05731"
/db_xref="CDD:235583"
misc_feature 279823..280689
/locus_tag="Dester_0292"
/note="ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the...; Region: ThiL;
cd02194"
/db_xref="CDD:100030"
misc_feature order(279838..279840,279892..279900,280051..280053,
280090..280092,280141..280143,280189..280197,
280264..280266,280450..280452,280456..280461)
/locus_tag="Dester_0292"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100030"
misc_feature order(279847..279849,279901..279903,279946..279954,
279958..279960,280141..280143,280186..280188,
280195..280206,280225..280227,280231..280233)
/locus_tag="Dester_0292"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100030"
gene 280764..281531
/locus_tag="Dester_0293"
/db_xref="GeneID:10269505"
CDS 280764..281531
/locus_tag="Dester_0293"
/EC_number="2.7.1.66"
/note="COGs: COG1968 Uncharacterized bacitracin resistance
protein;
HAMAP: Bacitracin resistance protein BacA;
InterPro IPR003824;
KEGG: pmx:PERMA_0381 undecaprenyl-diphosphatase UppP;
PFAM: Bacitracin resistance protein BacA;
SPTR: Undecaprenyl-diphosphatase;
TIGRFAM: Bacitracin resistance protein BacA;
PFAM: Bacitracin resistance protein BacA;
TIGRFAM: undecaprenyl-diphosphatase UppP"
/codon_start=1
/transl_table=11
/product="undecaprenyl-diphosphatase"
/protein_id="YP_004281008.1"
/db_xref="GI:325294494"
/db_xref="GeneID:10269505"
/translation="MNILDAIILGIVEGITEFLPISSTGHMILVSYLLGLKQNSFEKT
FEIAIQLGAILAVVSIYREKLTRNIELWKKLIAAFIPTGIIGLALHHYVEELFNPFVV
SIALIFWGAVFIVIELLYKEKEHHISEPEKISYLKAVMLGVFQSLAMIPGTSRSGATI
IGGLLLGMKRVAATEFSFLLAIPTMFAATGFEIVKNFKDFTPEGGIALIVGFVTAFVF
AYISVKWLLNFIKTHTFIPFGIYRIVVGFLFLKLFLL"
misc_feature 280764..281501
/locus_tag="Dester_0293"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:234712"
gene 281556..282635
/locus_tag="Dester_0294"
/db_xref="GeneID:10269506"
CDS 281556..282635
/locus_tag="Dester_0294"
/note="COGs: COG2805 Tfp pilus assembly protein pilus
retraction ATPase PilT;
InterPro IPR001482: IPR006321: IPR003593;
KEGG: aae:aq_745 twitching motility protein PilT;
PFAM: type II secretion system protein E;
SMART: ATPase, AAA+ type, core;
SPTR: Twitching motility protein PilT;
TIGRFAM: Pilus retraction protein PilT;
PFAM: type II/IV secretion system protein;
TIGRFAM: pilus retraction protein PilT"
/codon_start=1
/transl_table=11
/product="twitching motility protein"
/protein_id="YP_004281009.1"
/db_xref="GI:325294495"
/db_xref="GeneID:10269506"
/translation="MALSIVDLLKEVVERKASDLHIAPGSPPRLRINGDLIPIEGYGI
LSPTDTKQLIYSVLTDFQKKKLEENLELDFSFGIKGIARFRGNAYYQRTSLAAAFRLI
PYDIPKFPKLGLPPVVESFAHKDKGLVLVTGPTGSGKSTTLASLIDIINETYPYHIIT
IEDPIEFVYEHKKSLVTQRELGVDTKSFANALRASLREDPDVILVGEMRDPETIEAAL
TAAETGHLVFSTLHTNSTIETINRIVDVFPAEKQAQVRTQLSFVLVGAVAQKLLKRRD
GKGRVAAVEVFIPTPAIRNLIRENKLHQVYSLMQTGQSSTGMITMNQSLARLYIEGVI
TLEEAKKVSPDVKELESLIKAYMKG"
misc_feature 281556..282617
/locus_tag="Dester_0294"
/note="Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: PilT; COG2805"
/db_xref="CDD:225364"
misc_feature 281931..282530
/locus_tag="Dester_0294"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature order(281952..281957,281967..281975)
/locus_tag="Dester_0294"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature order(281955..281957,281967..281975,282033..282035,
282039..282044,282171..282176)
/locus_tag="Dester_0294"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature 282159..282173
/locus_tag="Dester_0294"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene 282638..283852
/locus_tag="Dester_0295"
/db_xref="GeneID:10269507"
CDS 282638..283852
/locus_tag="Dester_0295"
/note="COGs: COG1459 type II secretory pathway component
PulF;
InterPro IPR018076;
KEGG: ddf:DEFDS_1111 type IV pilus assembly protein PilC;
PFAM: type II secretion system F domain;
SPTR: type IV pilus assembly protein PilC;
PFAM: Bacterial type II secretion system protein F domain"
/codon_start=1
/transl_table=11
/product="type II secretion system F domain"
/protein_id="YP_004281010.1"
/db_xref="GI:325294496"
/db_xref="GeneID:10269507"
/translation="MAIYTYVGRDILDRKRKGKIEADNEKLAKQLLFSKGIVHIEKLK
EDKSIFKSELDFSFLNRISTKDKLIFTRQLYAMIHAGISIVTALRIIKEQIQNKSLKK
IIEDIASHIEEGGKFSTALSKYKNIFGELYISMIRAAEESGTLEETLKRLAEYLEKIE
KLRGKIKSALFYPAFVLLIATIIIGGILIFIIPTFKALYKDLGGELPSLTQFVIELSN
FLRDYVGWIVLGLVLTVVLLVSLRKFKKARYLMDLTLLRLPIIGQLILKASIASFSRT
LSSMVSSGLNILNALSISGETTNNEVLRRAINGVRNQVEKGISISVALSRYKVFSPML
INMVAIGEEAGNLDEMLSKVADFYEEEVDRTVDALTSLIEPIMMVFIGGIIGFIIIAM
YLPIFKIGELIK"
misc_feature 282638..283849
/locus_tag="Dester_0295"
/note="Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: PulF; COG1459"
/db_xref="CDD:224376"
misc_feature 282845..283165
/locus_tag="Dester_0295"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
misc_feature 283454..283822
/locus_tag="Dester_0295"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:215939"
gene complement(283874..285085)
/locus_tag="Dester_0296"
/db_xref="GeneID:10269508"
CDS complement(283874..285085)
/locus_tag="Dester_0296"
/note="COGs: COG0826 Collagenase and related protease;
InterPro IPR001539;
KEGG: fma:FMG_0634 collagenase family protease;
PFAM: peptidase U32;
SPTR: Collagenase family protease;
PFAM: peptidase family U32"
/codon_start=1
/transl_table=11
/product="peptidase U32"
/protein_id="YP_004281011.1"
/db_xref="GI:325294497"
/db_xref="GeneID:10269508"
/translation="MKPEVLSPAGNLEKLKFAIDFGADAVYLGGKLFNLRAKANNFTV
EEMAEGIEYAHRKGRKVYVTLNAFARNDDFEGIKNFVKEVKELEPDAFIVSDLGVLLT
VKEIAPEVDIHISTQSNVTNYKAVKVYQELGASRIVLARELSIEEIKEIKDRVPNMEV
EVFVHGAMCMAYSGRCLLSNYLSYRESNKGACSQSCRWKYYLVEETRPGEFIPIEEDE
KGTYIFNSKDLCALPLLEELIDAGVDSLKIEGRVKSAYYVAVTTSVYRKAVDLILNDR
EAFKKELPLLLEELKKISHRPYTIGFLSGNKENLQHYETSSYIRNYKFLAVFKNGKWN
VRNALKVGDEVEVFTPDAKTKKTIVKDIQILRKDKFENVKIAHPNQIAILKFENVLEI
PENAILRKKSV"
misc_feature complement(284051..285082)
/locus_tag="Dester_0296"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:223896"
misc_feature complement(284162..284866)
/locus_tag="Dester_0296"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:216321"
gene 285170..285844
/locus_tag="Dester_0297"
/db_xref="GeneID:10269509"
CDS 285170..285844
/locus_tag="Dester_0297"
/note="KEGG: sul:SYO3AOP1_0855 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281012.1"
/db_xref="GI:325294498"
/db_xref="GeneID:10269509"
/translation="MKKPPYKAYRKKEEKEAPVQIPDKIDTPEAKQLVDDLYKIGTYL
ITHWKKIFAVVVAFLIVGGGYLSYMWYQNSIEVKASQLVDEGLFKLEKGKIKEALQLF
SEAEKKYPEAPSTLIARFLKGKLEKNSDEFRYLAYKNKYIVSPPSKTSLTADYIEKGQ
LTEAEKLFSTLKRDKDWTYPEALYDSIIVALRKGDRKKALELLEILKGDYKDLPITIV
AEKLVE"
gene 285867..287099
/locus_tag="Dester_0298"
/db_xref="GeneID:10269510"
CDS 285867..287099
/locus_tag="Dester_0298"
/EC_number="6.1.1.21"
/note="COGs: COG0124 histidyl-tRNA synthetase;
HAMAP: histidyl-tRNA synthetase, class IIa, subgroup;
InterPro IPR002314: IPR004154: IPR015807;
KEGG: aae:aq_122 histidyl-tRNA synthetase;
PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S),
conserved domain; Anticodon-binding;
PRIAM: histidine--tRNA ligase;
SPTR: histidyl-tRNA synthetase;
TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup;
PFAM: Anticodon binding domain; tRNA synthetase class II
core domain (G, H, P, S and T);
TIGRFAM: histidyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase"
/protein_id="YP_004281013.1"
/db_xref="GI:325294499"
/db_xref="GeneID:10269510"
/translation="MEFKAVRGVEDLIPPESEKFEKVVETFKNVVNKAGFREVILPIF
EEAGLFSRSVGETTDIVQKEMYVFEDKGGRVIALRPEGTASAVRAYIEHGVFAKEPFT
KWFYVGPMFRFERPQAGRKRQFFQAGCEVFGLSSPGADAEVIKVACDILKALKIDYSL
ELNSIGCEKCRSEYKRALIEFLESRKEKLCEDCIKRFERNPLRVLDCKVETCQNIVAE
APKITDFLCNECSEHFEKLKEYLALLDVKFVENPFLVRGLDYYTKTVFEFKSKKLGAQ
STILAGGRYDKLVSQLGGPETPALGFAMGVDRAMLLLPEIEEKREGIFLVTRGEKAYK
EGLKLLRLLREKGFRVEIDHRQGSFKAQMKAADRVKAKYVVIIGESEVEEGFFSFKEL
ETGKQERVENIEALIARF"
misc_feature 285867..287096
/locus_tag="Dester_0298"
/note="histidyl-tRNA synthetase; Reviewed; Region: hisS;
PRK00037"
/db_xref="CDD:234586"
misc_feature 285912..286808
/locus_tag="Dester_0298"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for...; Region: HisRS-like_core;
cd00773"
/db_xref="CDD:238396"
misc_feature order(285927..285929,285963..285965,285978..285998,
286068..286073,286107..286109,286113..286115,
286128..286133,286140..286145,286230..286235,
286254..286256,286278..286280,286290..286292,
286299..286301,286713..286715,286767..286772)
/locus_tag="Dester_0298"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238396"
misc_feature 285972..285998
/locus_tag="Dester_0298"
/note="motif 1; other site"
/db_xref="CDD:238396"
misc_feature order(286107..286109,286113..286115,286200..286202,
286206..286208,286227..286229,286236..286238,
286242..286244,286254..286256,286632..286634,
286638..286640,286644..286649,286698..286700,
286713..286715,286770..286772,286779..286781,
286788..286790)
/locus_tag="Dester_0298"
/note="active site"
/db_xref="CDD:238396"
misc_feature 286197..286211
/locus_tag="Dester_0298"
/note="motif 2; other site"
/db_xref="CDD:238396"
misc_feature order(286767..286781,286788..286790)
/locus_tag="Dester_0298"
/note="motif 3; other site"
/db_xref="CDD:238396"
misc_feature 286833..287066
/locus_tag="Dester_0298"
/note="HGTP anticodon binding domain, as found at the
C-terminus of histidyl, glycyl, threonyl and prolyl tRNA
synthetases, which are classified as a group of class II
aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon
binding domain is responsible for...; Region:
HGTP_anticodon; cl00266"
/db_xref="CDD:241738"
misc_feature order(286848..286853,286956..286958,286974..286976,
286998..287000,287028..287030,287034..287036)
/locus_tag="Dester_0298"
/note="anticodon binding site; other site"
/db_xref="CDD:238379"
gene 287102..288220
/locus_tag="Dester_0299"
/db_xref="GeneID:10269511"
CDS 287102..288220
/locus_tag="Dester_0299"
/EC_number="1.1.1.267"
/note="COGs: COG0743 1-deoxy-D-xylulose 5-phosphate
reductoisomerase;
HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase;
InterPro IPR013512: IPR013644: IPR003821;
KEGG: cpc:Cpar_0071 1-deoxy-D-xylulose 5-phosphate
reductoisomerase;
PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase,
C-terminal; 1-deoxy-D-xylulose 5-phosphate
reductoisomerase, N-terminal;
PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase;
SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase;
TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase;
PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase;
1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal;
TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/codon_start=1
/transl_table=11
/product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
/protein_id="YP_004281014.1"
/db_xref="GI:325294500"
/db_xref="GeneID:10269511"
/translation="MKKVLILGSTGSIGESTLDVISRFPDRFKVEALVAGKNVEKLKE
QVEKFKPKAVCLVNSKDKFSFKGKFYLGLDGLKKLIEEVEFDICVSAITGSAGILPTY
WAANKGARIAIANKESLVCAGKFIMEAAKKVIPVDSEHSAIFQCLNGESRKNVKEIIL
TASGGPFRKRKDLESVTPQEALRHPNWDMGQKVTIDSATLMNKGLEVIEAYWLFGLEL
EKIKVLVHPQSIVHSFVRFIDNSVLAQLGVPDMRIPIAYALSYPERLPLDVEKLYLNL
YGLKLDFEEPDLKRFPALKLAYDSLKSGYPYPIVLNAADEVAVELFLKGKIKFTQIPV
LIEKTLQSSKFKEPSSIEEVIEIDKEARKIAMEISKCL"
misc_feature 287102..288217
/locus_tag="Dester_0299"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Provisional; Region: PRK05447"
/db_xref="CDD:235472"
misc_feature 287111..287470
/locus_tag="Dester_0299"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
Region: DXP_reductoisom; pfam02670"
/db_xref="CDD:217176"
misc_feature 287498..287743
/locus_tag="Dester_0299"
/note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
C-terminal; Region: DXP_redisom_C; pfam08436"
/db_xref="CDD:203943"
misc_feature 287840..288196
/locus_tag="Dester_0299"
/note="DXP reductoisomerase C-terminal domain; Region:
DXPR_C; pfam13288"
/db_xref="CDD:222027"
gene 288211..288723
/locus_tag="Dester_0300"
/db_xref="GeneID:10269512"
CDS 288211..288723
/locus_tag="Dester_0300"
/note="COGs: COG2109 ATP:corrinoid adenosyltransferase;
InterPro IPR003724;
KEGG: pth:PTH_1324 ATP:corrinoid adenosyltransferase;
PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin
adenosyltransferase CobA/CobO/ButR;
SPTR: ATP:corrinoid adenosyltransferase;
PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP;
TIGRFAM: cob(I)alamin adenosyltransferase"
/codon_start=1
/transl_table=11
/product="ATP:corrinoid adenosyltransferase
BtuR/CobO/CobP"
/protein_id="YP_004281015.1"
/db_xref="GI:325294501"
/db_xref="GeneID:10269512"
/translation="MPLKKGFVHIYTGNGKGKTSAALGLCLRAIGRGLKCCFLQFVKG
KITGEMLVANKLSNFEFIQLGRPGFDFKIVDEDYIRAENGIKLAEEKIKESDVIVLDE
INVAIHLGLIPVEKVVKLVKEKPESVELILTGRHAKKEIIELADYVTEIRLLKHPFYR
GVHGRKGIDY"
misc_feature 288220..288720
/locus_tag="Dester_0300"
/note="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP;
Region: CobA_CobO_BtuR; pfam02572"
/db_xref="CDD:217113"
gene 288698..288880
/locus_tag="Dester_0301"
/db_xref="GeneID:10269513"
CDS 288698..288880
/locus_tag="Dester_0301"
/note="KEGG: bxe:Bxe_C0475 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281016.1"
/db_xref="GI:325294502"
/db_xref="GeneID:10269513"
/translation="MGEKALIIRLIAICTVLLFSSGCVPLLIAGGAGAAAGYYAGKHY
DVEIESPVKVKRKDEE"
sig_peptide 288698..288799
/locus_tag="Dester_0301"
/note="Signal predicted by SignalP 3.0 HMM"
gene 288870..289544
/locus_tag="Dester_0302"
/db_xref="GeneID:10269514"
CDS 288870..289544
/locus_tag="Dester_0302"
/note="COGs: COG0602 Organic radical activating protein;
InterPro IPR007197;
KEGG: abi:Aboo_1450 radical SAM domain protein;
PFAM: Radical SAM;
SPTR: Radical SAM domain protein;
PFAM: Radical SAM superfamily"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_004281017.1"
/db_xref="GI:325294503"
/db_xref="GeneID:10269514"
/translation="MRSSIAISELFTSLQGEGLDLGAPSFFIRISGCSIGCKYCDTKY
SWKKGKLWDIDSLVKEVLKSKIPEVIVTGGEPVEEKNLSILIKRLSDLETVRKITLET
CGHIFRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEV
IKEFAYKNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIH
KLIGLK"
misc_feature 288882..289535
/locus_tag="Dester_0302"
/note="Organic radical activating enzymes
[Posttranslational modification, protein turnover,
chaperones]; Region: NrdG; COG0602"
/db_xref="CDD:223675"
misc_feature 288963..>289430
/locus_tag="Dester_0302"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(288966..288968,288972..288974,288978..288980,
288984..288989,288999..289001,289083..289085,
289089..289094,289170..289178,289251..289253,
289395..289397)
/locus_tag="Dester_0302"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 289544..290722
/locus_tag="Dester_0303"
/db_xref="GeneID:10269515"
CDS 289544..290722
/locus_tag="Dester_0303"
/note="COGs: COG1519 3-deoxy-D-manno-octulosonic-acid
transferase;
InterPro IPR007507;
KEGG: bfl:Bfl610 3-deoxy-D-manno-octulosonic-acid
transferase;
PFAM: 3-deoxy-D-manno-octulosonic-acid transferase,
N-terminal;
SPTR: 3-deoxy-D-manno-octulosonic-acid transferase;
PFAM: 3-deoxy-D-manno-octulosonic-acid transferase
(kdotransferase)"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_004281018.1"
/db_xref="GI:325294504"
/db_xref="GeneID:10269515"
/translation="MRIFFYNVLLSSSILFYPVVKLATRKRGNISISDRFLTDFPQLK
GKILLHLSSIGEVNSVKPLVKKLKDRLALTVFTDYGLERAKNIYPEVPSKILPLDLYP
IVKKFLQKNKPEKILIYETEIWPSLLHCAGKLKIPTFIVSGKISERSFKNYKNFKFFF
KPLFKNVVFLARSQADADRAKSLGFKNVKIVGDLKFDVEKPESLSDLFIEGNRKVIIW
GSTHQGEEKIAFELHEKLKSKFPNLLTIIAPRHIKRAKEIKIPSRYAFRSETKQITSD
IEFYIVDTIGELSSLYRFGDVIVIGGSFVPNIGGHNPIEAALWKKPVVIGDFGTDFSE
VAYRLKVPVLTVKELLRFVEKLLLDKRFYSELSETIFKSYQKEKGVTERILKAIGEEL
"
misc_feature 289544..290707
/locus_tag="Dester_0303"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:235589"
misc_feature 289682..290140
/locus_tag="Dester_0303"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:218074"
gene 290719..291822
/locus_tag="Dester_0304"
/db_xref="GeneID:10269516"
CDS 290719..291822
/locus_tag="Dester_0304"
/EC_number="2.7.1.130"
/note="COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase;
HAMAP: Tetraacyldisaccharide 4'-kinase;
InterPro IPR003758;
KEGG: saf:SULAZ_1148 tetraacyldisaccharide 4'-kinase;
PFAM: Tetraacyldisaccharide 4'-kinase;
PRIAM: Tetraacyldisaccharide 4'-kinase;
SPTR: Tetraacyldisaccharide 4'-kinase;
TIGRFAM: Tetraacyldisaccharide 4'-kinase;
PFAM: Tetraacyldisaccharide-1-P 4'-kinase;
TIGRFAM: tetraacyldisaccharide 4'-kinase"
/codon_start=1
/transl_table=11
/product="tetraacyldisaccharide 4'-kinase"
/protein_id="YP_004281019.1"
/db_xref="GI:325294505"
/db_xref="GeneID:10269516"
/translation="MNLNKLRLKALRKEGIGVFLFPVLWSLSKLYCFGAEVRNFLYSN
GFLESKAFPFPVISVGNIVAGGSGKTPLTESIYLILEEMGFSPAIVSRGYKGKEKGPA
FATDNVELFGDEASLYAVKGYKTIVSKNKLKGIEYAFLKGANVVILDDGFQYRKLLPK
INIAVIDPFNPFGDNYCLPLGLLREAPKNLERADCFVITRSNLIDSKRLNSLELYLRS
FRKPIFLAEQVFKFWINESFERTEPPEREIDVFCGIGNPSQFVEMLINMGYKVRNYVI
YDDHHAYTQDDIKELKRFKNLVTTEKDLIKLRKSGLRLKAPVIRFDAYGLKEYLSSNI
ENTEKLEEEVERGFIPSGISTFKGESFFNKENW"
misc_feature 290776..291642
/locus_tag="Dester_0304"
/note="Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK;
pfam02606"
/db_xref="CDD:217138"
gene 291749..292609
/locus_tag="Dester_0305"
/db_xref="GeneID:10269517"
CDS 291749..292609
/locus_tag="Dester_0305"
/note="COGs: COG1560 Lauroyl/myristoyl acyltransferase;
InterPro IPR004960;
KEGG: glo:Glov_0768 lipid A biosynthesis acyltransferase;
PFAM: Bacterial lipid A biosynthesis acyltransferase;
SPTR: Lipid A biosynthesis acyltransferase;
manually curated;
PFAM: Bacterial lipid A biosynthesis acyltransferase"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis acyltransferase"
/protein_id="YP_004281020.1"
/db_xref="GI:325294506"
/db_xref="GeneID:10269517"
/translation="MKEVSYLLEYLLLKGSLSLIRKIGRDKAFKIGDILAEIIYYYPR
IKRVTEENLLFAGFPLEVGKESLKSFIRCSIDFIKSTNYSFEYLKKLFKPVDPSTIPS
EGGILLTAHIGNWELMGALFSVLSDGKLSVVAKPMKNHRVDKLINSIRQKWGIKVIPT
GNVIEIVKDLKKNRYVGILLDQRPKVKEGVLTDFLGRETYTNKGVALLSIKTGKPIIP
AFCFVENDKYVIETYKPIYPDGKTVEELTKECTKAIEKAVRKHPEQWFWFHRRWKNSP
EFKKWKEKNF"
misc_feature 292058..292567
/locus_tag="Dester_0305"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature order(292079..292081,292088..292090,292094..292096,
292148..292159,292292..292300)
/locus_tag="Dester_0305"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene 292588..293496
/locus_tag="Dester_0306"
/db_xref="GeneID:10269518"
CDS 292588..293496
/locus_tag="Dester_0306"
/EC_number="2.5.1.75"
/note="COGs: COG0324 tRNA
delta(2)-isopentenylpyrophosphate transferase;
HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase;
InterPro IPR018022: IPR002627;
KEGG: chy:CHY_1394 tRNA delta(2)-isopentenylpyrophosphate
transferase;
PFAM: tRNA isopentenyltransferase;
PRIAM: tRNA isopentenyltransferase;
SPTR: tRNA dimethylallyltransferase;
TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate
transferase;
PFAM: IPP transferase;
TIGRFAM: tRNA isopentenyltransferase (miaA)"
/codon_start=1
/transl_table=11
/product="tRNA dimethylallyltransferase"
/protein_id="YP_004281021.1"
/db_xref="GI:325294507"
/db_xref="GeneID:10269518"
/translation="MEREKLLIILTGPTATGKTDFSIKLAKEIEGEIISADSMQVYKG
LDIGTDKVSKEIMKEIPHYLIDIRKPNEPFSVAEFVEEADKAIKEIREKNKYPIVVGG
TGFYIRALLYGLPKVPAGNEKIRKELEKLSTEEIYALLEEVDKLSAERIGSNDRKRLI
RAYEVYKLTGKPLSSFEIPQKPRYKFLGYFLYRNRPELYKRIEDRVDSQIKRGLIDET
KWLLEFGKNTTAFQALGYKEMLQYLEGKKTLEEAIKLLKRRTKQFAKRQFTWFRKEPK
FKWVNLSEVSERKLIDMIKKEIREEV"
misc_feature 292594..293475
/locus_tag="Dester_0306"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis]; Region:
MiaA; COG0324"
/db_xref="CDD:223401"
misc_feature 292600..293487
/locus_tag="Dester_0306"
/note="tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed; Region: miaA; PRK00091"
/db_xref="CDD:234626"
gene 293493..293726
/locus_tag="Dester_0307"
/db_xref="GeneID:10269519"
CDS 293493..293726
/locus_tag="Dester_0307"
/note="COGs: COG1923 Uncharacterized host factor I
protein;
InterPro IPR005001: IPR001163;
KEGG: zmn:Za10_0891 RNA-binding protein Hfq;
PFAM: Like-Sm ribonucleoprotein (LSM) domain;
SPTR: Protein hfq;
TIGRFAM: Host factor Hfq;
PFAM: LSM domain;
TIGRFAM: RNA chaperone Hfq"
/codon_start=1
/transl_table=11
/product="RNA chaperone Hfq"
/protein_id="YP_004281022.1"
/db_xref="GI:325294508"
/db_xref="GeneID:10269519"
/translation="MNLQDTYLNRLRKERIPVSVFLSKGTRLQGVITFFDQFTILLEN
GGSQQLVYKHSIATIVPSRPVKNLFKEEENKNG"
misc_feature 293496..293675
/locus_tag="Dester_0307"
/note="bacterial Hfq-like; Region: Hfq; cd01716"
/db_xref="CDD:212463"
misc_feature order(293496..293504,293511..293513,293556..293570,
293592..293600,293604..293609,293631..293675)
/locus_tag="Dester_0307"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:212463"
misc_feature order(293544..293564,293568..293621)
/locus_tag="Dester_0307"
/note="Sm1 motif; other site"
/db_xref="CDD:212463"
misc_feature order(293553..293555,293565..293579,293616..293618,
293637..293639,293661..293666,293670..293672)
/locus_tag="Dester_0307"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:212463"
misc_feature 293634..293669
/locus_tag="Dester_0307"
/note="Sm2 motif; other site"
/db_xref="CDD:212463"
gene 293719..295143
/locus_tag="Dester_0308"
/db_xref="GeneID:10269520"
CDS 293719..295143
/locus_tag="Dester_0308"
/note="COGs: COG3581 conserved hypothetical protein;
KEGG: aae:aq_276 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281023.1"
/db_xref="GI:325294509"
/db_xref="GeneID:10269520"
/translation="MAKTILFGGLTPLHELFMKGAVESLGYRAEFLPTPSNHSFAVGR
EFCNRGMCNPTYYTVGNLIKYLQEKRAEGIDVENEYSFVTIGACGPCRFGMYETEYRH
ALKLAGFKNLSVSILNQSELSSEGDLELTPSLVWRLVKAVWVADIVRDLGYQLRPYEV
LSGSVDKVISEMKEEIYKVLKKGGRVKDIIFVLKLLRKKLEELQFDYSRVKPVVSVIG
EFWAHTTEGDGNYNLHRWLEESGAEVKVESIAGWIDYQLFMEEEKAKLEIRAKGLSLS
RAKKLLFIRAMAVTFRNLYNLFRRIFSFRPRPLPSQKYLVELAKPYFDHLVVGGEGHL
EVAKHIYNVKEKKAHMTVSVKPFGCMPSTQSDGAQAKVLSDYPESIFISIETSGDGEV
NVKSRVQMKLFEAKKAAQKEFDELLSSLRLTKSTVKKILETESFRKPFLKLSKDYIGT
TARLLKANEKVFLSSALQFRELGA"
misc_feature 293731..295017
/locus_tag="Dester_0308"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3581"
/db_xref="CDD:226109"
gene 295144..296757
/locus_tag="Dester_0309"
/db_xref="GeneID:10269521"
CDS 295144..296757
/locus_tag="Dester_0309"
/note="COGs: COG1293 RNA-binding protein homologous to
eukaryotic snRNP;
InterPro IPR008616: IPR008532;
KEGG: hor:Hore_09780 fibronectin-binding A domain protein;
PFAM: Fibronectin-binding A, N-terminal; Protein of
unknown function DUF814;
SPTR: Fibronectin-binding A domain protein;
PFAM: Domain of unknown function (DUF814);
Fibronectin-binding protein A N-terminus (FbpA)"
/codon_start=1
/transl_table=11
/product="fibronectin-binding A domain-containing protein"
/protein_id="YP_004281024.1"
/db_xref="GI:325294510"
/db_xref="GeneID:10269521"
/translation="MDYLYIEKCVKELKERILKERVIKIYSDYRLFSVKIGSSFLNIY
TGQPNALFFSNENLVSSELQGFNIIQGTFVRAVKLPVIDRVIEVETVKLLPSGSFELY
FLIFELTGKNANVFLLNQKRKILSLLREVKSSIRPISRGEIYTFPPQEKKEFQELEFG
KVKREGIEKNLHKFVAGISPLNGKEIAYLFEKFGNLQKAYEEFLRKHKESKSAFLYYE
KGKPKYMTTFFYQSLKNLEFKKFSGNFPYTKCWEFYYREKIEKEKVDSLKKSLLKDVE
KRIEALKKEIEALKSKEELLKEAEENRKLGELLKYNLNSLKPGKKSVKVFDYYTNQEI
EVPIDPSVSPQKNVEKYFSKYRKLKRKAEYEETLRKKLEEELLEQEFLKSSINEKESL
EELKSFLPETKEKEKRKKNFKVYILPSGRKIVVGRSSRENEFLSLKLANPWDIWFHAK
EIPGSHVILRLEKGEKPSEEDIVLSAATAAFFSRGKQSGKVAVDYTEVKNLKKPKGAP
PGFVVYENEKTIFVNPELFSSFSKESKKS"
misc_feature 295144..296718
/locus_tag="Dester_0309"
/note="Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription]; Region: COG1293"
/db_xref="CDD:224212"
misc_feature 296386..296652
/locus_tag="Dester_0309"
/note="Domain of unknown function (DUF814); Region:
DUF814; pfam05670"
/db_xref="CDD:218683"
gene complement(296719..297390)
/locus_tag="Dester_0310"
/db_xref="GeneID:10269522"
CDS complement(296719..297390)
/locus_tag="Dester_0310"
/note="COGs: COG0670 Integral membrane protein interacts
with FtsH;
InterPro IPR006214;
KEGG: dvm:DvMF_0927 protein of unknown function UPF0005;
PFAM: Bax inhibitor-1-related;
SPTR: uncharacterized protein;
PFAM: Uncharacterised protein family UPF0005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281025.1"
/db_xref="GI:325294511"
/db_xref="GeneID:10269522"
/translation="MEFERNPIAVEKTEVTSFNAFLGKVFLNMFLGLLLTAITAYLSL
TSGFVFSLGKWGFIGFAVLSLVLVIATGLLRNNPLLSGAAFYLFSAAEGILLAPIFIV
YTGSSIITAFLTASILFGIMALLAISKKVDFRKFGTYLFVGLIGIVVASLLNVFLLKS
AGLGIAISILTVLVFLGLTAYDIQKLEEMAYTEGNAFFGALALYLDLINLFLALLRLF
GERRE"
misc_feature complement(296794..297336)
/locus_tag="Dester_0310"
/note="Integral membrane protein, interacts with FtsH
[General function prediction only]; Region: COG0670"
/db_xref="CDD:223742"
misc_feature complement(296809..297336)
/locus_tag="Dester_0310"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene complement(297544..297645)
/locus_tag="Dester_0311"
/db_xref="GeneID:10269523"
CDS complement(297544..297645)
/locus_tag="Dester_0311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281026.1"
/db_xref="GI:325294512"
/db_xref="GeneID:10269523"
/translation="MESNPIKTLMFYGVFGIYILIVLITSYVIITMK"
gene complement(297626..298039)
/locus_tag="Dester_0312"
/db_xref="GeneID:10269524"
CDS complement(297626..298039)
/locus_tag="Dester_0312"
/note="KEGG: lba:Lebu_0310 transcriptional regulator, TetR
family;
SPTR: Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281027.1"
/db_xref="GI:325294513"
/db_xref="GeneID:10269524"
/translation="MAAIIGLKERFLTERKDLIDKAYELYRKTGSWKEVEKFLREEFK
EELSIFKPNLFTYFLLVGGILLLPSLYLWKVYFEPGTTAHFLSRLTFMLAAMFSLKGI
VGHYVILFINRDRFEVELNTLKASIKGGNNGKQSN"
gene complement(298070..298162)
/locus_tag="Dester_0313"
/db_xref="GeneID:10269525"
CDS complement(298070..298162)
/locus_tag="Dester_0313"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281028.1"
/db_xref="GI:325294514"
/db_xref="GeneID:10269525"
/translation="MWLIIAFIWWIAVAWITYALAKSKFEREGI"
sig_peptide complement(298100..298162)
/locus_tag="Dester_0313"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(298191..299384)
/locus_tag="Dester_0314"
/db_xref="GeneID:10269526"
CDS complement(298191..299384)
/locus_tag="Dester_0314"
/note="COGs: COG1294 Cytochrome bd-type quinol oxidase
subunit 2;
InterPro IPR003317;
KEGG: cli:Clim_1817 cytochrome d ubiquinol oxidase,
subunit II;
PFAM: Cytochrome bd ubiquinol oxidase, subunit II;
SPTR: Cytochrome d ubiquinol oxidase, subunit II;
TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II;
PFAM: Cytochrome oxidase subunit II;
TIGRFAM: cytochrome d oxidase, subunit II (cydB)"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase, subunit II"
/protein_id="YP_004281029.1"
/db_xref="GI:325294515"
/db_xref="GeneID:10269526"
/translation="MHFDLPTIWAFLVTVLIAGYILTDGFDLGVGILHGLIAKTDIEK
RVMLNSIGPVWDGNEVWFITAGGAAFAAFPELYAALFSSLYIALFIVLLALIFRAVSF
EFRSKEADPGWRKLWDQSIFWSSLIVALLIGVAIGNILAGIPIKNTAIEGEKLLGFIY
TEKFPISFINLVNPFTFHGFYGLLVGIATVLFVILHGVSWLLWKTEGEIAERARNVAL
KLWLPFVIMYVVCTGLAYTISFKVSNLENIKYLGLPEDTLQSIASMIDSNGVLHHALF
RYPAIELTLIVLAALSAVGYLMAVKNMNGARAFLFSSLTFVFAGFAVFFGAYPLAVPS
SFGLEHSISIYNGASSTLTLTVMLVAALIFTPIVIAYQAWVYKMFLFKISTESIKREI
EEAHG"
misc_feature complement(298248..299375)
/locus_tag="Dester_0314"
/note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
pfam02322"
/db_xref="CDD:216972"
misc_feature complement(298215..299363)
/locus_tag="Dester_0314"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene complement(299400..300800)
/locus_tag="Dester_0315"
/db_xref="GeneID:10269527"
CDS complement(299400..300800)
/locus_tag="Dester_0315"
/note="COGs: COG1271 Cytochrome bd-type quinol oxidase
subunit 1;
InterPro IPR002585;
KEGG: ddf:DEFDS_1619 cytochrome bd oxidase subunit I;
PFAM: Cytochrome bd ubiquinol oxidase, subunit I;
SPTR: Cytochrome bd oxidase subunit I;
PFAM: Bacterial Cytochrome Ubiquinol Oxidase"
/codon_start=1
/transl_table=11
/product="cytochrome bd ubiquinol oxidase subunit I"
/protein_id="YP_004281030.1"
/db_xref="GI:325294516"
/db_xref="GeneID:10269527"
/translation="MDFVLLVSRLQFAMTAFFHFIFVPLTLGLSTLSAIMLTLYYVTG
KEIYKNMTKFWAKLFAINFALGVATGLVHEFEFGMNWSVYSRFVGDIFGAPLAIEGLL
AFFMESTFIGVFLFGWDKVPKGVHLLAAWLSSIGSNLSALWILIANGWMQHPVGAKVT
ETLAGKRAELTDWWAVVFNPVADVKFWHTATAGMILSAVFVLAVSAYHLLRKQNVEFF
KKSAYIALVFGLIASAGEVIIGDIHAYEVAKTQPTKLAAGEALWDTKKGANLLIFAWA
DEEAKKNIIEIPLPVPGLLSFLATHDFNGELKGAKDLQKQFENTFGAGNYIPPVNFSF
LSFHLMVYLGFFFVALFLIGLIKYKNLENSKGYLKLALYSLPLPYIACWLGWAYAEVG
RQPWIVYPLTDDHGKILMSEIGLKTAEAVSPLTNVEVVITYVVFAITFTALAIADFYL
LAKFATKGPEKEAELY"
misc_feature complement(299424..300791)
/locus_tag="Dester_0315"
/note="cytochrome d terminal oxidase subunit 1;
Provisional; Region: PRK15097"
/db_xref="CDD:185052"
misc_feature complement(299421..300779)
/locus_tag="Dester_0315"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:216630"
gene complement(300897..301775)
/locus_tag="Dester_0316"
/db_xref="GeneID:10269528"
CDS complement(300897..301775)
/locus_tag="Dester_0316"
/EC_number="2.7.2.8"
/note="COGs: COG0548 Acetylglutamate kinase;
InterPro IPR004662: IPR001048;
KEGG: ddf:DEFDS_0261 acetylglutamate kinase;
PFAM: Aspartate/glutamate/uridylate kinase;
PRIAM: Acetylglutamate kinase;
SPTR: Acetylglutamate kinase;
TIGRFAM: Acetylglutamate kinase;
PFAM: Amino acid kinase family;
TIGRFAM: acetylglutamate kinase"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_004281031.1"
/db_xref="GI:325294517"
/db_xref="GeneID:10269528"
/translation="MEKLIEKASTLLEALPYIKRFYGKTIVIKYGGNAMVREELKDAF
AEDIVLLKYIGINPVIVHGGGPQIGEFLEKLKIPTRFIGGMRVTDKETMNVVEMVLVG
KVNKEIVKLINSHGGNAVGLSGKDGNLIIAEKIDSKKYLSEVKAPEIIDLGFVGKVKK
INPDIVNKLIESKFIPVIAPVGIGEDFEAYNINADLVAGEVAAALKAEKLIMLTDVEG
IKDKNGKLIKSIARKDLSNLIENGTISGGMIPKVKACEIALIGGVRKTHIIDGRVKHS
ILLEIFTQEGIGTEIV"
misc_feature complement(300903..301748)
/locus_tag="Dester_0316"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:239783"
misc_feature complement(301719..301748)
/locus_tag="Dester_0316"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:239783"
misc_feature complement(order(300927..300929,300939..300944,
300951..300953,301254..301256,301281..301283,
301392..301403,301407..301409,301413..301421,
301425..301427,301446..301448,301458..301460,
301467..301469,301482..301487,301494..301496,
301551..301556,301614..301616,301626..301628,
301638..301640,301719..301724,301731..301733,
301737..301745))
/locus_tag="Dester_0316"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:239783"
misc_feature complement(order(301023..301025,301032..301037,
301041..301043,301047..301049,301116..301118,
301128..301136,301197..301199,301677..301682,
301689..301691))
/locus_tag="Dester_0316"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:239783"
misc_feature complement(order(301194..301199,301203..301205,
301518..301523,301584..301589))
/locus_tag="Dester_0316"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:239783"
gene 301850..302422
/locus_tag="Dester_0317"
/db_xref="GeneID:10269529"
CDS 301850..302422
/locus_tag="Dester_0317"
/note="COGs: COG0163 3-polyprenyl-4-hydroxybenzoate
decarboxylase;
InterPro IPR004507: IPR003382;
KEGG: pho:PH1014 aromatic acid decarboxylase;
PFAM: Flavoprotein;
SPTR: Aromatic acid decarboxylase;
TIGRFAM: phenylacrylic acid decarboxylase;
PFAM: Flavoprotein;
TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic
acid decarboxylases"
/codon_start=1
/transl_table=11
/product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
/protein_id="YP_004281032.1"
/db_xref="GI:325294518"
/db_xref="GeneID:10269529"
/translation="MKRVIVGITGASGSIYGKRIVEVLVANSYLVDIIFSEIGKKVFE
YEIGMTVEEFVDSFPREQVTLFSHNDLFALPSSGSYQAIGMIIAPCSAGTLGHIASGT
TRNLIHRAADVTLKEKRSLILVLRETPLNRIHIENMLKVNDAGATILPASPGFYGKPQ
KVDDLVNFVVERALRALTGKEFNLIKNWGE"
misc_feature 301850..302419
/locus_tag="Dester_0317"
/note="aromatic acid decarboxylase; Validated; Region:
PRK05920"
/db_xref="CDD:180312"
misc_feature 301853..302251
/locus_tag="Dester_0317"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:217035"
gene complement(302403..303350)
/locus_tag="Dester_0318"
/db_xref="GeneID:10269530"
CDS complement(302403..303350)
/locus_tag="Dester_0318"
/EC_number="6.1.1.6"
/note="COGs: COG2269 Truncated possibly inactive
lysyl-tRNA synthetase (class II);
InterPro IPR004364;
KEGG: pmx:PERMA_1095 lysyl-tRNA synthetase;
PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N);
PRIAM: Lysine--tRNA ligase;
SPTR: Lysine--tRNA ligase;
PFAM: tRNA synthetases class II (D, K and N)"
/codon_start=1
/transl_table=11
/product="lysine--tRNA ligase"
/protein_id="YP_004281033.1"
/db_xref="GI:325294519"
/db_xref="GeneID:10269530"
/translation="MEEILKLRSKLLKVVRGFFELQGFIEVETPLMVPYENPDSNVVN
VKVSFSNFSGKKFNWFLHTSPEFFMKRIIWHGIPRIYQISKVFRNGEITESHNVEFTM
VEWYRTGADYKKGMEETLELLKECVKAAKKEELSYRGKRSHLHGYISFTVEEAFREFA
GVKDIFDEEEVLKVSKEKEYESAFFKLLVDKVEPALAEFQVPVFLYNYPAKFSAMAKV
KGNYAERFELYVCGLELANGYTELTDFESYKKKFFEKGKQAVDKGFLKLLKEKPLPSC
EGVALGFDRVLMLITGKKIHEVIPFSTKKLINELILPNF"
misc_feature complement(302436..303299)
/locus_tag="Dester_0318"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it...; Region: class_II_aaRS-like_core;
cl00268"
/db_xref="CDD:241739"
misc_feature complement(302451..303299)
/locus_tag="Dester_0318"
/note="EF-P lysine aminoacylase GenX; Region: genX;
TIGR00462"
/db_xref="CDD:232984"
misc_feature complement(303267..303281)
/locus_tag="Dester_0318"
/note="motif 1; other site"
/db_xref="CDD:238391"
misc_feature complement(order(302991..302993,303084..303086,
303090..303092,303135..303140,303267..303269,
303273..303278))
/locus_tag="Dester_0318"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:238391"
misc_feature complement(order(302496..302498,302505..302510,
302514..302519,302634..302636,302646..302651,
303033..303041,303045..303047,303051..303053,
303087..303089,303153..303155,303159..303161))
/locus_tag="Dester_0318"
/note="active site"
/db_xref="CDD:238391"
misc_feature complement(303084..303092)
/locus_tag="Dester_0318"
/note="motif 2; other site"
/db_xref="CDD:238391"
misc_feature complement(order(302496..302498,302505..302507))
/locus_tag="Dester_0318"
/note="motif 3; other site"
/db_xref="CDD:238391"
gene 303382..304098
/locus_tag="Dester_0319"
/db_xref="GeneID:10269531"
CDS 303382..304098
/locus_tag="Dester_0319"
/note="COGs: COG0622 phosphoesterase;
InterPro IPR004843;
KEGG: sul:SYO3AOP1_1287 metallophosphoesterase;
PFAM: Metallophosphoesterase;
SPTR: Metallophosphoesterase;
PFAM: Calcineurin-like phosphoesterase"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_004281034.1"
/db_xref="GI:325294520"
/db_xref="GeneID:10269531"
/translation="MKVGIISDIHGNIHALQAVAEELEKEQVDEVWCLGDVVGYGAFP
NECLQWIEDNCTHFVLGNHELALLNLVDISMLNDYAARTILWTKEVLKEKFLDFLMSK
GVQVLTSKFQLVHDTPESSGSMKYILTIEDAYHGLIRQVRQVCFFGHTHIPTVFKLEV
ANPDRIRTSIVKLKKGRYLINPGSVGQPRDRNPEASFIIFDGKTIYFRRVKYDVKSAA
KAILKAGLPKFLAARLLVGV"
misc_feature 303382..303984
/locus_tag="Dester_0319"
/note="Calcineurin-like phosphoesterase superfamily
domain; Region: Metallophos_2; pfam12850"
/db_xref="CDD:221807"
misc_feature 303385..303840
/locus_tag="Dester_0319"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:215750"
misc_feature order(303403..303405,303409..303411,303487..303489,
303565..303567,303610..303612,303724..303726,
303826..303828)
/locus_tag="Dester_0319"
/note="active site"
/db_xref="CDD:163614"
misc_feature order(303403..303405,303409..303411,303487..303489,
303565..303567,303724..303726,303826..303828)
/locus_tag="Dester_0319"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene 304100..305530
/locus_tag="Dester_0320"
/db_xref="GeneID:10269532"
CDS 304100..305530
/locus_tag="Dester_0320"
/note="COGs: COG1012 NAD-dependent aldehyde dehydrogenase;
InterPro IPR015590;
KEGG: aae:aq_186 aldehyde dehydrogenase;
PFAM: Aldehyde dehydrogenase;
SPTR: Aldehyde dehydrogenase;
PFAM: Aldehyde dehydrogenase family"
/codon_start=1
/transl_table=11
/product="Aldehyde Dehydrogenase"
/protein_id="YP_004281035.1"
/db_xref="GI:325294521"
/db_xref="GeneID:10269532"
/translation="MKGYMLIAGKKVYTQEEIKILFPYDGSLVGTIPRGKEEDVNLAA
ESAKVGFEKIKKMTAYERYQCLQRAARIISKRANEFAHLLTLEVGKTIKESMGEVGRA
VNTITLSAEEAKRILGEEVPFDAAPGIENKVGFYRRVPLGIIGCITPFNFPLNLTCHK
VAPALAAGNSVIIKPSENTSLVVIKLAEVLIEAGFPPEAVNVVTGYGEEAGDALVRSK
DVRMITFTGSVETGKIIMSRGGLKKYAMELGSNAGVYIDEDQDYRLKEIAEKVARGGF
ALAGQVCISVQRVFVHEKLFDTFIEEITAFSKTLKVGDPRKDDTGMGPVIDENAADRI
MEWIEEAKSLGAEIVCGGKRISNTLIEPTVVINVPEKAKLFRKEVFGPVIIVNKVSSI
KEGINQVNNSPYGLQAGIFTNNLKNAFKFSEEVECGGIMVNEIPTFRVDQMPYGGVKE
SGIGREGPHFAIEEMTEIKTICFDLG"
misc_feature 304139..305512
/locus_tag="Dester_0320"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:215767"
misc_feature 304166..305518
/locus_tag="Dester_0320"
/note="Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1; Region:
ALDH_y4uC; cd07149"
/db_xref="CDD:143467"
misc_feature order(304538..304552,304574..304576,304619..304621,
304625..304630,304772..304783,304790..304792,
304799..304804,304838..304846,304946..304948,
305231..305233,305237..305239,305315..305317,
305432..305434)
/locus_tag="Dester_0320"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143467"
misc_feature order(304550..304552,304838..304840,304937..304939,
304946..304948)
/locus_tag="Dester_0320"
/note="catalytic residues [active]"
/db_xref="CDD:143467"
gene complement(305595..306389)
/locus_tag="Dester_0321"
/db_xref="GeneID:10269533"
CDS complement(305595..306389)
/locus_tag="Dester_0321"
/EC_number="4.1.2.13"
/note="COGs: COG1830 DhnA-type fructose-1 6-bisphosphate
aldolase;
InterPro IPR010210: IPR002915;
KEGG: aae:aq_1554 fructose-bisphosphate aldolase;
PFAM: deoxyribose-phosphate
aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase;
PRIAM: Fructose-bisphosphate aldolase;
SPTR: Uncharacterized aldolase aq_1554;
TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase;
PFAM: DeoC/LacD family aldolase;
TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate
aldolase"
/codon_start=1
/transl_table=11
/product="phospho-2-dehydro-3-deoxyheptonate aldolase"
/protein_id="YP_004281036.1"
/db_xref="GI:325294522"
/db_xref="GeneID:10269533"
/translation="MKIGKAIRMERILNRETGNTVIIPMDHGVSMGPIPGIIDIRESI
DRVANGGANAVIIHKGLVRHGHRKGGKDVGLILHMSASTSLSPKPNTKVLVCTVEEAI
KLGADGVSIHVNLGDINEDKMLEDFGRVSESCLEWGMPLIAMMYARGEHIKDQFDPEV
VAHCARVAAELGADIVKVAYTGDPESFRKVTEGCPIPVVIAGGPKMDSDMEILEMVEG
AMKAGAKGVSIGRNAFQHENPEKIVKAIAAIVHEGKSAKEAAEYLK"
misc_feature complement(305616..306389)
/locus_tag="Dester_0321"
/note="DhnA-type fructose-1,6-bisphosphate aldolase and
related enzymes [Carbohydrate transport and metabolism];
Region: FbaB; COG1830"
/db_xref="CDD:224743"
misc_feature complement(305637..306332)
/locus_tag="Dester_0321"
/note="Class I fructose-1,6-bisphosphate (FBP) aldolases
of the archaeal type (DhnA homologs); Region: DhnA;
cd00958"
/db_xref="CDD:188645"
misc_feature complement(order(305664..305672,305730..305738,
305802..305804,305811..305813))
/locus_tag="Dester_0321"
/note="putative active site; other site"
/db_xref="CDD:188645"
misc_feature complement(305811..305813)
/locus_tag="Dester_0321"
/note="catalytic residue [active]"
/db_xref="CDD:188645"
gene complement(306501..307808)
/locus_tag="Dester_0322"
/db_xref="GeneID:10269534"
CDS complement(306501..307808)
/locus_tag="Dester_0322"
/note="COGs: COG3547 transposase and inactivated
derivatives;
InterPro IPR003346;
KEGG: llo:LLO_2911 transposase;
PFAM: transposase, IS116/IS110/IS902;
SPTR: transposase;
PFAM: transposase IS116/IS110/IS902 family; transposase"
/codon_start=1
/transl_table=11
/product="transposase IS116/IS110/IS902 family protein"
/protein_id="YP_004281037.1"
/db_xref="GI:325294523"
/db_xref="GeneID:10269534"
/translation="MSPPEIRDYSKEATFKGRRLDFSLGNKPRAWRLADASCRLIIVA
GSAVLEYGNSPEAEVAKHKTYQGVEMKEKVEKTLYVGVDYHKNSFTAAYLDCLTGILN
TKKYEAEELEKFKNHLTTFRKKGYSVKVAVETLTGVTFFTEEIRNCVDEITYVNTNKF
KNILKGVNSAKNDRIDAETIAIYYEMGLLPTVYVPTRKEKELRIKMKERDSFVDMRKG
VINRLHSLLLEYGIKTNKRELTTKKGMERIKEETKKKVPPSLRETIWRQIETIEYLTD
KIRETEEDIKSFIGEDEELKGKVELLKSIPGVGDIVAIAFISAVCNEERFENGDKVAA
YFGLVPRVNSSGDEVRNGRITKKGDSRTRNKIIQATRALLNSKLDNSVKRFYEGLVKK
GLEKKKALIAAARKLVKVMFAVLRERRQFMDFVENKCNLCVGG"
misc_feature complement(307143..307574)
/locus_tag="Dester_0322"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:216564"
misc_feature complement(306648..>307346)
/locus_tag="Dester_0322"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature complement(306648..306914)
/locus_tag="Dester_0322"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene complement(307812..308420)
/locus_tag="Dester_0323"
/db_xref="GeneID:10269535"
CDS complement(307812..308420)
/locus_tag="Dester_0323"
/note="COGs: COG1351 alternative thymidylate synthase;
InterPro IPR003669;
KEGG: tye:THEYE_A0969 thymidylate synthase,
flavin-dependent;
PFAM: Thymidylate synthase ThyX;
SPTR: Thymidylate synthase, flavin-dependent;
TIGRFAM: Thymidylate synthase ThyX;
PFAM: Thymidylate synthase complementing protein;
TIGRFAM: thymidylate synthase, flavin-dependent"
/codon_start=1
/transl_table=11
/product="thymidylate synthase, flavin-dependent"
/protein_id="YP_004281038.1"
/db_xref="GI:325294524"
/db_xref="GeneID:10269535"
/translation="MEVLLLSENVPPLEGNLKVLLRHSHFTFLVDGISRACSHQLVRH
RPASYSQQSQRYVAMKNFPYVIPESVRKKKVEIEGKTYSYNDVMMFIGKFYEALVEEE
VPKEDARFVLPNACTTRIVFTMNGEELIHFLRLRTCTRAQWEIRKVAIKMLKILREKH
PSLFKSVGPNCYYLGYCTEGKKSCGRQKEMKAYFSSLCKEMI"
misc_feature complement(307932..308372)
/locus_tag="Dester_0323"
/note="Thymidylate synthase complementing protein; Region:
Thy1; pfam02511"
/db_xref="CDD:217076"
gene complement(308435..309472)
/locus_tag="Dester_0324"
/db_xref="GeneID:10269536"
CDS complement(308435..309472)
/locus_tag="Dester_0324"
/note="InterPro IPR002559;
KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein;
PFAM: transposase, IS4-like;
SPTR: transposase IS4 family protein;
PFAM: transposase DDE domain"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_004281039.1"
/db_xref="GI:325294525"
/db_xref="GeneID:10269536"
/translation="MPKLRKKPILSGMKAKRLNFHKVLNLSKTYMNRRGQAVLVYLYP
FKTKRGRPKKYPDEIILTLLFLQVAWNLSFRDLEYLAVQIFGRENIPDFSTYYYRLKQ
LPSILLVDFLNFVSRRLLGKYHKELRFLIIDGTGFKYNEIYPLKILRGKEIKEVKSHV
KVVVLSVHLKDGKRFILTALPGESYASEVKLGEKIVRWLNERGFIWRALKGKPFLGDK
AYDSIKFIELVLLVGLKPYIKVRETLRKGIKSEIRLKCKELLESDEIYRFRGLIESIF
GEVKQDVGSYEKTKSFHIAQLFVLAKFILFNMGVLFHGSFVLCLDDFSNTLCLKFSEA
ILIPYNFIFHN"
misc_feature complement(309056..>309331)
/locus_tag="Dester_0324"
/note="Transposase DDE domain; Region: DDE_Tnp_1_5;
pfam13737"
/db_xref="CDD:222354"
misc_feature complement(308549..>308848)
/locus_tag="Dester_0324"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
gene 309571..310649
/locus_tag="Dester_0325"
/db_xref="GeneID:10269537"
CDS join(309571..309942,309942..310649)
/locus_tag="Dester_0325"
/ribosomal_slippage
/note="KEGG: saf:SULAZ_1706 transposase;
SPTR: transposase;
manually curated;
PFAM: Integrase core domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281040.1"
/db_xref="GI:325294526"
/db_xref="GeneID:10269537"
/translation="MKQLKRFKGTSLHISSTNTAFKETLKEGRRVKKKLDLTKDRNVK
KRLKWIEYYHKTGNARKTCRYFGISPTTFYKWKKRYDKYGIEGLQDRNKRPHKVRQPQ
TEPEIEHIIVTIRENSQPGAKKKIAAFMERYLNVKISSSTVYRVLKRHGLIERTWKLK
STYKRKKQKGKKNRTRKGLRADKPGTILMDVKYLYWCGKTFYQFTAIDKFTRIAFAKV
YSTKSSRSGRRFFEELEKFLPFKIEKVQTDNGSEFLGELDEYLKRKGIEHYFSYPKSP
KTNAHVERFIQTTESELWMIEGTEPTVDEMNKKLFEYLKIYNFLRPHHSLNYKTPAEK
FEDYIRSHQGVHHVLNSNTWLDIFF"
misc_feature 309703..309858
/locus_tag="Dester_0325"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature join(309706..309942,309942..310022)
/locus_tag="Dester_0325"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
misc_feature join(309784..309942,309942..310010)
/locus_tag="Dester_0325"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature join(309865..309942,309942..310583)
/locus_tag="Dester_0325"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:225361"
misc_feature 310119..310448
/locus_tag="Dester_0325"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 310359..310562
/locus_tag="Dester_0325"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene 310679..310754
/locus_tag="Dester_R0005"
/db_xref="GeneID:10269538"
tRNA 310679..310754
/locus_tag="Dester_R0005"
/product="tRNA-Lys"
/db_xref="GeneID:10269538"
gene 310764..310841
/locus_tag="Dester_R0006"
/db_xref="GeneID:10269539"
tRNA 310764..310841
/locus_tag="Dester_R0006"
/product="tRNA-Glu"
/db_xref="GeneID:10269539"
gene 310852..310927
/locus_tag="Dester_R0007"
/db_xref="GeneID:10269540"
tRNA 310852..310927
/locus_tag="Dester_R0007"
/product="tRNA-Ala"
/db_xref="GeneID:10269540"
gene 310944..311020
/locus_tag="Dester_R0008"
/db_xref="GeneID:10269541"
tRNA 310944..311020
/locus_tag="Dester_R0008"
/product="tRNA-Met"
/db_xref="GeneID:10269541"
gene 311040..312101
/locus_tag="Dester_0326"
/db_xref="GeneID:10269542"
CDS 311040..312101
/locus_tag="Dester_0326"
/note="COGs: COG0624 Acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase and
related deacylase;
InterPro IPR002933: IPR011650;
KEGG: sul:SYO3AOP1_0594 succinyl-diaminopimelate
desuccinylase;
PFAM: peptidase M20; peptidase M20, dimerisation;
SPTR: peptidase M20;
PFAM: peptidase family M20/M25/M40; peptidase dimerisation
domain;
TIGRFAM: succinyl-diaminopimelate desuccinylase"
/codon_start=1
/transl_table=11
/product="peptidase M20"
/protein_id="YP_004281041.1"
/db_xref="GI:325294527"
/db_xref="GeneID:10269542"
/translation="MPVSLLQKLISIPSVYGNEKEIADFVENFIKEKNSKLSVIRENN
TIVAYTHFESKKKTIALVGHLDTVPGENDYTGQIINGKLYGLGTSDMKAGDAVMLKLI
EDFAFKSSKYNLFFIFYEKEEGPYLDNGLRQIFDRYLDLLKKIDFAFVLEPTDNVVQV
GCLGVIHAWFKFKGKRAHSARPWEGHNAIHKGWKLLKFLNELEPVEYKVGKLSYFEVL
NATMTEFKGGRNIIPEEFKVNLNYRFSPTKTLEEAKEDLLKIKEQIEADEIEFTDLSP
AARPCIDNPILVEFLKRFNLPIEPKQAWTDVAQFSYHGIDAVNFGPGQPHQAHQKNEY
VEIEKVKECYEMLYAFLKD"
misc_feature 311043..312092
/locus_tag="Dester_0326"
/note="M20 Peptidase actinobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_actinobac; cd05647"
/db_xref="CDD:193525"
misc_feature 311043..312092
/locus_tag="Dester_0326"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13007"
/db_xref="CDD:237264"
misc_feature order(311229..311231,311307..311309,311403..311408,
311493..311495,312024..312026)
/locus_tag="Dester_0326"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193525"
misc_feature order(311538..311540,311571..311582,311598..311600,
311604..311609,311616..311621,311625..311630,
311637..311639,311688..311690,311694..311717,
311733..311738,311760..311762,311766..311768,
311946..311948)
/locus_tag="Dester_0326"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193525"
gene complement(312098..313657)
/locus_tag="Dester_0327"
/db_xref="GeneID:10269543"
CDS complement(312098..313657)
/locus_tag="Dester_0327"
/EC_number="1.4.3.16"
/note="COGs: COG0029 Aspartate oxidase;
InterPro IPR005288: IPR003953: IPR004112;
KEGG: sul:SYO3AOP1_0678 L-aspartate oxidase;
PFAM: Fumarate reductase/succinate dehydrogenase
flavoprotein, N-terminal; Fumarate reductase/succinate
dehydrogenase flavoprotein, C-terminal;
PRIAM: L-aspartate oxidase;
SPTR: L-aspartate oxidase;
TIGRFAM: L-aspartate oxidase;
PFAM: domain; FAD binding domain;
TIGRFAM: L-aspartate oxidase"
/codon_start=1
/transl_table=11
/product="L-aspartate oxidase"
/protein_id="YP_004281042.1"
/db_xref="GI:325294528"
/db_xref="GeneID:10269543"
/translation="MKSFLSVDTATISHKEYDAIVVGSGAAGLFCATKLSSLGLKVCV
LTKDAADVGSTKLAQGGIAAALSKEDSPDLHFNDTLKAGAGLVKTKMARILTEEGVKR
VIDLIRMGANFETNEKGLLKFTKEAAHSVARIVYYKDKTGEEVERALLDSYRGDIIEF
AEVKELIVKNNRCYGVIYEKDGKINAIYAPVTAIATGGAAGIYLKNTNPPTSTGDGIA
IALRYGAKLQDLEFVQFHPTAFCDDSECFLISEAVRGEGAIIVDEQGRRFMGDYHHLW
ELAPRDVVTRAIECQKKICGGNVYLDFRPIEKKGIDIFKRFPTITSKLFEKGLNPKKD
LIPITPVAHYYIGGIAVDSFGRSSIEGLFAVGEASCTGVHGANRLASNSLLECLVFGE
RTAYGMYRDWRYLRQDFSPIGIKLNQKSVLSNNKFSLKEVQEIMWKNVGIVRSAESLT
KAIDKLSEIANSNSDWQVRNGAVLGLAITISAMRREESRGGHYRSDFPYEREEFRKHS
TFTLSDLERLI"
misc_feature complement(312473..313615)
/locus_tag="Dester_0327"
/note="L-aspartate oxidase; Provisional; Region: PRK06175"
/db_xref="CDD:180442"
misc_feature complement(312104..313606)
/locus_tag="Dester_0327"
/note="Aspartate oxidase [Coenzyme metabolism]; Region:
NadB; COG0029"
/db_xref="CDD:223108"
misc_feature complement(<312122..312370)
/locus_tag="Dester_0327"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:217281"
gene complement(313680..314390)
/locus_tag="Dester_0328"
/db_xref="GeneID:10269544"
CDS complement(313680..314390)
/locus_tag="Dester_0328"
/note="COGs: COG0797 lipoprotein;
InterPro IPR012997: IPR005132: IPR007730;
KEGG: dat:HRM2_49390 RlpA-like lipoprotein precursor;
PFAM: Rare lipoprotein A; Sporulation related domain;
SPTR: RlpA-like lipoprotein;
TIGRFAM: Rare lipoprotein A, bacterial;
PFAM: Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Sporulation related domain;
TIGRFAM: rare lipoprotein A"
/codon_start=1
/transl_table=11
/product="rare lipoprotein A"
/protein_id="YP_004281043.1"
/db_xref="GI:325294529"
/db_xref="GeneID:10269544"
/translation="MRKIWLLMLLSFFFLSCGEQKRIYWNFPVTKSNCKYTYKVNGRT
YCVRKKADGYVEYGIASWYGPGFHGRRTASGEIYNMYKLTAAHKTLPLGTYVKVINLE
NGRSVIVKINDRGPFVRGRIIDLSYAAAKKIRMLKKGTAKVKIIALGKRVNHKYIPVE
IKKGRFYIQVGAFKNKLNAYKFKNRIYKKFGIKAKVVKLDNYYRVLAGPTYTYKKAKE
FKKKLRNIGIKDSFIIRY"
sig_peptide complement(314337..314390)
/locus_tag="Dester_0328"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature complement(<313944..>314279)
/locus_tag="Dester_0328"
/note="Lipoproteins [Cell envelope biogenesis, outer
membrane]; Region: RlpA; COG0797"
/db_xref="CDD:223868"
misc_feature complement(313956..314219)
/locus_tag="Dester_0328"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:217497"
misc_feature complement(313686..313907)
/locus_tag="Dester_0328"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 314490..315872
/locus_tag="Dester_0329"
/db_xref="GeneID:10269545"
CDS 314490..315872
/locus_tag="Dester_0329"
/note="InterPro IPR000771;
KEGG: pmx:PERMA_0265 aldolase;
PFAM: Ketose-bisphosphate aldolase, class-II;
SPTR: Aldolase;
PFAM: Fructose-bisphosphate aldolase class-II"
/codon_start=1
/transl_table=11
/product="ketose-bisphosphate aldolase class-II"
/protein_id="YP_004281044.1"
/db_xref="GI:325294530"
/db_xref="GeneID:10269545"
/translation="MEKFTCDELKDALKGIIEVGEDRVKVLDEQKVRNELIDRLIYTA
VFGDEGKEKECSRWLIRAIALELDIVPASIHDLYVQGMANGEIDQWFTVPAMNIRGMT
YDVMRQIFKIAVEKEIGAFILEIAKSEIGYTEQRPAEYTACALAAAIKEGYKGPVFIQ
GDHFQFNAKKYAEDPEKELENIKALTKEAIEADFYNIDIDPSTLVDYSKPTLKEQQYF
NYLNTAKMTAFIREIEPQGITVSVGGEIGHIGGKNSTPEEFEAFMEGYLESLKKYGKN
IPGISKISVQTGTEHGGVPLPDGKIAEVKLDFSVLEKIGEVARKKYSMAGAVQHGAST
LPDELFHKFPEVKTAEIHLATGFQNIIYDHLPEDFKQEIYSWLKTELKNEWKEGWTEE
QFIYKTRKKAFGPFKKKFWDLPQDVKEKIMAELEKKFRFLFEQLNVYGTKKYIDKYIK
PVKIYKRRPY"
misc_feature 314760..315605
/locus_tag="Dester_0329"
/note="Fructose/tagarose-bisphosphate aldolase class II.
This family includes fructose-1,6-bisphosphate (FBP) and
tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is
homodimeric and used in gluconeogenesis and glycolysis;
the enzyme controls the...; Region: FTBP_aldolase_II;
cl17181"
/db_xref="CDD:247735"
misc_feature order(314778..314780,314973..314978,315087..315089,
315222..315224,315228..315230,315237..315248,
315357..315365,315375..315377,315477..315482,
315486..315488,315543..315545,315549..315554)
/locus_tag="Dester_0329"
/note="active site"
/db_xref="CDD:238255"
misc_feature order(314787..314795,314808..314810,314871..314873,
314880..314888,314907..314909,314922..314924,
314931..314936,315246..315248,315552..315557,
315561..315566,315573..315575,315585..315587,
315594..315596)
/locus_tag="Dester_0329"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:238255"
misc_feature order(314976..314978,315087..315089,315222..315224,
315243..315245,315360..315362,315477..315479)
/locus_tag="Dester_0329"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:238255"
misc_feature order(315357..315359,315363..315365,315375..315377,
315480..315482,315486..315488)
/locus_tag="Dester_0329"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:238255"
gene 316023..316907
/locus_tag="Dester_0330"
/db_xref="GeneID:10269546"
CDS 316023..316907
/locus_tag="Dester_0330"
/note="COGs: COG1162 GTPase;
HAMAP: ribosome biogenesis GTPase RsgA;
InterPro IPR004881;
KEGG: pmx:PERMA_0939 ribosome small subunit-dependent
GTPase A;
PFAM: GTPase EngC;
SPTR: YjeQ protein;
TIGRFAM: GTPase EngC;
PFAM: Protein of unknown function, DUF258;
TIGRFAM: ribosome small subunit-dependent GTPase A"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTPase RsgA"
/protein_id="YP_004281045.1"
/db_xref="GI:325294531"
/db_xref="GeneID:10269546"
/translation="MVEGIVIERAGQKITVFVPEKNKSYRGIPLGKVKKKDKVYAGDK
VKGRIVDSESFAIEVIEERKNLLIRPPIANVEKVVIVATIQNPPFQSFLMDNLLVVYS
YLGLDTVIVFNKIDLLDEVGKEELQRWYTIYKNAGYKVIKTSAETKEGIEELRRELLG
AISIFAGPSGVGKSSLISKLTGKELRIGEVSRKTERGKHTTREVRLIPFEGSFIGDAP
GFSRVEALNFMEKEEVRFYFPEFLRYQCKYSDCLHLNEEGCEVREALKKGEISCERYK
NYLKMTKEFVPWLKEVCD"
misc_feature 316029..316874
/locus_tag="Dester_0330"
/note="Predicted GTPases [General function prediction
only]; Region: COG1162"
/db_xref="CDD:224084"
misc_feature 316029..316229
/locus_tag="Dester_0330"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:245202"
misc_feature order(316041..316043,316065..316067,316098..316100,
316104..316106)
/locus_tag="Dester_0330"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:238094"
misc_feature 316239..316865
/locus_tag="Dester_0330"
/note="Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases; Region:
YjeQ_EngC; cd01854"
/db_xref="CDD:206747"
misc_feature order(316293..316298,316305..316310,316314..316319,
316326..316331,316434..316436,316719..316721,
316731..316733,316737..316739,316842..316844,
316851..316853,316863..316865)
/locus_tag="Dester_0330"
/note="GTPase/Zn-binding domain interface [polypeptide
binding]; other site"
/db_xref="CDD:206747"
misc_feature order(316359..316364,316368..316373,316452..316457,
316530..316547)
/locus_tag="Dester_0330"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206747"
misc_feature 316359..316370
/locus_tag="Dester_0330"
/note="G4 box; other site"
/db_xref="CDD:206747"
misc_feature 316452..316460
/locus_tag="Dester_0330"
/note="G5 box; other site"
/db_xref="CDD:206747"
misc_feature 316521..316544
/locus_tag="Dester_0330"
/note="G1 box; other site"
/db_xref="CDD:206747"
misc_feature 316614..316637
/locus_tag="Dester_0330"
/note="Switch I region; other site"
/db_xref="CDD:206747"
misc_feature 316623..316625
/locus_tag="Dester_0330"
/note="G2 box; other site"
/db_xref="CDD:206747"
misc_feature 316668..316679
/locus_tag="Dester_0330"
/note="G3 box; other site"
/db_xref="CDD:206747"
misc_feature 316674..316682
/locus_tag="Dester_0330"
/note="Switch II region; other site"
/db_xref="CDD:206747"
gene 316907..317698
/locus_tag="Dester_0331"
/db_xref="GeneID:10269547"
CDS 316907..317698
/locus_tag="Dester_0331"
/EC_number="2.1.2.11"
/note="COGs: COG0413 Ketopantoate
hydroxymethyltransferase;
HAMAP: Ketopantoate hydroxymethyltransferase;
InterPro IPR003700;
KEGG: cbi:CLJ_B0494 3-methyl-2-oxobutanoate
hydroxymethyltransferase;
PFAM: Ketopantoate hydroxymethyltransferase;
PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase;
SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase;
TIGRFAM: Ketopantoate hydroxymethyltransferase;
PFAM: Ketopantoate hydroxymethyltransferase;
TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase"
/codon_start=1
/transl_table=11
/product="3-methyl-2-oxobutanoate
hydroxymethyltransferase"
/protein_id="YP_004281046.1"
/db_xref="GI:325294532"
/db_xref="GeneID:10269547"
/translation="MAITTATFLEKKKRGEKITVLTAYDYLTAKIVDSAGVDAILVGD
SLGMVALGYSSTIPVTMEEMIHHTKAVVRGRKNAMVIFDMPFLSYQTGVKDAILNAGR
ALKETGCDAVKIEGGVTQKEVIRALVDSGIPVMGHIGLQPQSVNVYGGYKLRGKGEER
EKIIEDAKAVEEAGAFAVVLEKIPQSLSKEITESLSIPTIGIGAGKYCDGQVLVFHDM
VGLFEEFKPKFVKRYAELGKLAREAVKQYIEEVKSGKFPGREHSY"
misc_feature 316919..317677
/locus_tag="Dester_0331"
/note="Ketopantoate hydroxymethyltransferase (KPHMT) is
the first enzyme in the pantothenate biosynthesis pathway.
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes
the first committed step in the biosynthesis of
pantothenate (vitamin B5), which is a...; Region:
KPHMT-like; cd06557"
/db_xref="CDD:119342"
misc_feature order(316919..316924,316979..316990,316997..316999,
317042..317044,317048..317065,317075..317080,
317093..317095,317102..317107,317114..317116,
317123..317125,317162..317167,317195..317197,
317207..317209,317216..317221,317234..317236,
317288..317305,317333..317338,317342..317353,
317432..317434,317552..317554,317561..317566,
317606..317608,317615..317629)
/locus_tag="Dester_0331"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:119342"
misc_feature order(316970..316972,317027..317029,317033..317041,
317153..317155,317243..317245,317315..317317,
317330..317332,317447..317449,317540..317542,
317546..317548)
/locus_tag="Dester_0331"
/note="active site"
/db_xref="CDD:119342"
misc_feature order(317036..317038,317153..317155,317243..317245)
/locus_tag="Dester_0331"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119342"
gene 317698..318654
/locus_tag="Dester_0332"
/db_xref="GeneID:10269548"
CDS 317698..318654
/locus_tag="Dester_0332"
/EC_number="3.6.3.24"
/note="COGs: COG1123 ATPase components of various ABC-type
transport systems contain duplicated ATPase;
InterPro IPR010066: IPR003439: IPR013563: IPR003593;
KEGG: aar:Acear_0632 oligopeptide/dipeptide ABC
transporter, ATPase subunit;
PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC
transporter, C-terminal;
PRIAM: Nickel-transporting ATPase;
SMART: ATPase, AAA+ type, core;
SPTR: Oligopeptide/dipeptide ABC transporter, ATPase
subunit;
TIGRFAM: Oligopeptide/dipeptide ABC transporter,
ATP-binding protein, C-terminal;
PFAM: ABC transporter; Oligopeptide/dipeptide transporter,
C-terminal region;
TIGRFAM: oligopeptide/dipeptide ABC transporter,
ATP-binding protein, C-terminal domain"
/codon_start=1
/transl_table=11
/product="oligopeptide/dipeptide ABC transporter ATPase"
/protein_id="YP_004281047.1"
/db_xref="GI:325294533"
/db_xref="GeneID:10269548"
/translation="MILEIKEVFKSFPVKKSFFGKVEKVINALNGISLSIFPKETVGV
IGESGCGKSTLGKVILDLERPDKGKVLYKGKEIQTLSKEGYKIYRKNVQAIFQNPQNS
LNPRMKIWEIVTEGLKINYDLSQKELEEKAKELLSTVGLSSSYLNRYPHQLSGGQKQR
IAIARAIALNPELIVADEPTSALDVSVQAQVVNLLVDIQERQGVSYFFISHSLPVVEA
ISDRVIVMYKGYIVEEGTSKEVFSDTKHPYTKVLISSVPVPDPIKKRKVLKLPDIDTE
ETIKTGCPFYPRCPKRNKDCLTYDMKPIEISLTHKVSCLLYT"
misc_feature 317764..318648
/locus_tag="Dester_0332"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:223521"
misc_feature 317770..318402
/locus_tag="Dester_0332"
/note="ATP-binding cassette domain of nickel/oligopeptides
specific transporters; Region: ABC_NikE_OppD_transporters;
cd03257"
/db_xref="CDD:213224"
misc_feature 317833..317856
/locus_tag="Dester_0332"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213224"
misc_feature order(317842..317847,317851..317859,317986..317988,
318226..318231,318328..318330)
/locus_tag="Dester_0332"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213224"
misc_feature 317977..317988
/locus_tag="Dester_0332"
/note="Q-loop/lid; other site"
/db_xref="CDD:213224"
misc_feature 318154..318183
/locus_tag="Dester_0332"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213224"
misc_feature 318214..318231
/locus_tag="Dester_0332"
/note="Walker B; other site"
/db_xref="CDD:213224"
misc_feature 318238..318249
/locus_tag="Dester_0332"
/note="D-loop; other site"
/db_xref="CDD:213224"
misc_feature 318316..318336
/locus_tag="Dester_0332"
/note="H-loop/switch region; other site"
/db_xref="CDD:213224"
misc_feature 318391..318585
/locus_tag="Dester_0332"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:219806"
gene complement(318651..319388)
/locus_tag="Dester_0333"
/db_xref="GeneID:10269549"
CDS complement(318651..319388)
/locus_tag="Dester_0333"
/note="COGs: COG1040 amidophosphoribosyltransferase;
InterPro IPR000836;
KEGG: tpd:Teth39_1788 phosphoribosyltransferase;
PFAM: phosphoribosyltransferase;
SPTR: phosphoribosyltransferase;
PFAM: phosphoribosyl transferase domain;
TIGRFAM: comF family protein"
/codon_start=1
/transl_table=11
/product="phosphoribosyltransferase"
/protein_id="YP_004281048.1"
/db_xref="GI:325294534"
/db_xref="GeneID:10269549"
/translation="MGGNRKVSAGKFLRNFILDLLFPEYCLVCGSFLFLDHSYIACNN
CWESYFKEFKGKKCSTCGYPLKLKPGTAYSCRDCLETGRSFSFDGVEYFGIYSDLIDL
AIKTLKFEKKLPVGWKIGETIKEHIQKYIYQTKVDCVIPVPLHKEELKERGFNQCEEI
LKGAEISFVRGIKKAYKVERQSSLPLEKRVENIKGIFEVVEKVWGKRILLFDDVFTTG
STVNEISRVLKENGASKVFVYSVARSI"
misc_feature complement(318657..319340)
/locus_tag="Dester_0333"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:223970"
misc_feature complement(318666..319034)
/locus_tag="Dester_0333"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(318729..318743,318747..318755,
318933..318935,318960..318962))
/locus_tag="Dester_0333"
/note="active site"
/db_xref="CDD:206754"
gene complement(319349..320512)
/locus_tag="Dester_0334"
/db_xref="GeneID:10269550"
CDS complement(319349..320512)
/locus_tag="Dester_0334"
/note="COGs: COG0420 DNA repair exonuclease;
InterPro IPR004843;
KEGG: msi:Msm_0121 DNA repair exonuclease Rad32;
PFAM: Metallophosphoesterase;
SPTR: DNA repair exonuclease (SbcD/Mre11-family), Rad32;
PFAM: Calcineurin-like phosphoesterase"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_004281049.1"
/db_xref="GI:325294535"
/db_xref="GeneID:10269550"
/translation="MKIAHISDTHLGYTQYRLSERKKDFFLAFEKAVDRIIEERIDIV
IHTGDLFETHQPDMVTLSQCIGILQKLKNAGIEFITITGNHDRVLRKGTIPPHKILEE
LGLLKLVDPYGVLKMGDLFIAGFRYLPKRMIQQLKASFFEKLQEEVDKSKYSILMFHQ
GIGQYLPHEESFEMEIFDLPQGFKYYAGGHIHVFVKEKLYNGIFSYAGSTEFRSKKEV
LSGRRGFNIFDFKTNELKRIEIEGLRSFELLKVSEDKDDIKEKLKELSQRIECYEIPP
VVLIDYVYKTTEPEVFKVIFQEIERRALYLKINKKRVTEETIEIESEKGKSFSEFLTD
FLKEKNYGETVIKLAEEVIESQTEHVEDILKDYVKKEVGKDWEEIEKYLQESF"
misc_feature complement(319355..320512)
/locus_tag="Dester_0334"
/note="DNA repair exonuclease [DNA replication,
recombination, and repair]; Region: SbcD; COG0420"
/db_xref="CDD:223497"
misc_feature complement(319871..320509)
/locus_tag="Dester_0334"
/note="Mre11 nuclease, N-terminal metallophosphatase
domain; Region: MPP_Mre11_N; cd00840"
/db_xref="CDD:163616"
misc_feature complement(order(319937..319945,320036..320038,
320258..320263,320366..320368,320483..320485,
320489..320491))
/locus_tag="Dester_0334"
/note="active site"
/db_xref="CDD:163616"
misc_feature complement(order(319937..319939,319943..319945,
320036..320038,320261..320263,320366..320368,
320483..320485,320489..320491))
/locus_tag="Dester_0334"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163616"
misc_feature complement(order(320126..320131,320243..320248,
320252..320254,320357..320359,320459..320479))
/locus_tag="Dester_0334"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:163616"
gene complement(320525..320818)
/locus_tag="Dester_0335"
/db_xref="GeneID:10269551"
CDS complement(320525..320818)
/locus_tag="Dester_0335"
/note="KEGG: dsa:Desal_0019 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281050.1"
/db_xref="GI:325294536"
/db_xref="GeneID:10269551"
/translation="MKKLMLLATLSLIFSFSSCSCKWQTKMEKEVLKVTGGEFTVKVY
NGGKLIATYEGKGYVWFEMDKNGRHTGVVTFKDERGHIIRVGGFGGVVIVDYQ"
sig_peptide complement(320759..320818)
/locus_tag="Dester_0335"
/note="Signal predicted by SignalP 3.0 HMM"
gene complement(320815..321927)
/locus_tag="Dester_0336"
/db_xref="GeneID:10269552"
CDS complement(320815..321927)
/locus_tag="Dester_0336"
/EC_number="2.6.1.9"
/note="COGs: COG0079 histidinol-phosphate/aromatic
aminotransferase and cobyric acid decarboxylase;
HAMAP: histidinol-phosphate aminotransferase;
InterPro IPR005861: IPR004839;
KEGG: mta:Moth_0515 histidinol phosphate aminotransferase;
PFAM: Aminotransferase, class I/II;
PRIAM: histidinol-phosphate transaminase;
SPTR: histidinol-phosphate aminotransferase;
TIGRFAM: histidinol-phosphate aminotransferase;
PFAM: Aminotransferase class I and II;
TIGRFAM: histidinol-phosphate aminotransferase"
/codon_start=1
/transl_table=11
/product="histidinol-phosphate aminotransferase"
/protein_id="YP_004281051.1"
/db_xref="GI:325294537"
/db_xref="GeneID:10269552"
/translation="MFSLPEHIKKVHVYEPGKPEDELKRELGLREIVKLASNENPLGP
SPAAVRAIIEDLKNLNRYPDGNSYYLKRALAKHLGVGIENLFVGLGSNEALDIISRAY
LRPGLNAVYSEKSFAVYPIVVQLAGAEHKVVKVKDNYYMDLKAHLDAIDENTAVVFLA
NPNNPTGTAFSRTEFETFLKDFPDNVLLVLDEAYYEYAVGAGFDIENGVEYIHEKNIV
VTRTFSKIYGLAGLRLGYAVAKKEIIDDMNRIRQPFNVTRPAQVGGVAALEDKMFIKH
SQVVNEEGKKYLYEQFEKLGLPYVPTYANFILVKVGFPSREVFKRLLQKGVIVRAMDG
YGFNDHIRVTVGTMRENIIFINKLKEVLEELKDESL"
misc_feature complement(320863..321915)
/locus_tag="Dester_0336"
/note="histidinol-phosphate aminotransferase; Validated;
Region: PRK02731"
/db_xref="CDD:235064"
misc_feature complement(320872..321831)
/locus_tag="Dester_0336"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(321229..321231,321253..321258,
321262..321264,321346..321348,321436..321438,
321580..321582,321652..321660))
/locus_tag="Dester_0336"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(321139..321141,321148..321150,
321229..321237,321367..321369,321550..321552,
321649..321651))
/locus_tag="Dester_0336"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(321253..321255)
/locus_tag="Dester_0336"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 321991..322488
/locus_tag="Dester_0337"
/db_xref="GeneID:10269553"
CDS 321991..322488
/locus_tag="Dester_0337"
/note="COGs: COG1546 Uncharacterized protein (competence-
and mitomycin-induced);
InterPro IPR008136;
KEGG: abi:Aboo_0833 CinA domain protein;
PFAM: CinA, C-terminal;
SPTR: CinA domain protein;
TIGRFAM: CinA, C-terminal;
PFAM: Competence-damaged protein;
TIGRFAM: competence/damage-inducible protein CinA
C-terminal domain"
/codon_start=1
/transl_table=11
/product="CinA domain-containing protein"
/protein_id="YP_004281052.1"
/db_xref="GI:325294538"
/db_xref="GeneID:10269553"
/translation="MKPEVELKELLLKKRLKLSTAESCTGGLVAARIVNVPGSSEYFM
GGVVAYDNSIKMKVLNVSPETLLKFGAVSEETAKEMVLGVKKLMNTECAISTTGIAGP
TGETPEKPVGLTYIGVSVGDRVEVFKFIFEDKDPDEVARRNNRRRKTAKKALKLLVQM
LKEEK"
misc_feature 322045..322407
/locus_tag="Dester_0337"
/note="Competence-damaged protein; Region: CinA;
pfam02464"
/db_xref="CDD:145546"
gene 322485..322880
/locus_tag="Dester_0338"
/db_xref="GeneID:10269554"
CDS 322485..322880
/locus_tag="Dester_0338"
/note="COGs: COG0801 7
8-dihydro-6-hydroxymethylpterin-pyrophosphokinase;
InterPro IPR000550;
KEGG: fno:Fnod_1754
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase;
PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase,
HPPK;
SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid
inepyrophosphokinase;
TIGRFAM:
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK;
PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK);
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_004281053.1"
/db_xref="GI:325294539"
/db_xref="GeneID:10269554"
/translation="MKVVLILGTNLGNRLDNLKRAEELIEKFVGRILRKTEIIETAPF
GVVNQPSFLNYGLLIDTYHPPSELLKLLKWIEKRVGRYKTFRWGPRVVDIDIIKYENL
FINTKSLKIPHPGLQHRAFFVKIYKCLSI"
misc_feature 322491..322847
/locus_tag="Dester_0338"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:238269"
misc_feature order(322506..322508,322605..322610,322614..322616,
322638..322640,322644..322646,322689..322691,
322701..322703,322710..322712,322725..322727,
322731..322733,322743..322745,322752..322754,
322761..322763,322767..322772,322812..322814,
322821..322826,322839..322841,322845..322847)
/locus_tag="Dester_0338"
/note="catalytic center binding site [active]"
/db_xref="CDD:238269"
misc_feature order(322689..322691,322701..322703,322710..322712,
322725..322727,322731..322733,322752..322754,
322767..322772,322812..322814,322821..322826,
322839..322841)
/locus_tag="Dester_0338"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238269"
gene 322896..324116
/locus_tag="Dester_0339"
/db_xref="GeneID:10269555"
CDS 322896..324116
/locus_tag="Dester_0339"
/note="COGs: COG2206 HD-GYP domain;
InterPro IPR006675: IPR006674: IPR003607;
KEGG: tjr:TherJR_0746 metal dependent phosphohydrolase;
PFAM: Metal-dependent phosphohydrolase, HD subdomain;
SPTR: Metal dependent phosphohydrolase;
TIGRFAM: HDIG;
PFAM: HD domain;
TIGRFAM: uncharacterized domain HDIG"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_004281054.1"
/db_xref="GI:325294540"
/db_xref="GeneID:10269555"
/translation="MLEPTLDISKLLLAVSSLNSLANPILNNHNYKVAFISYLIAREI
SYSSEFLYNILVAGLFHDIGLLMVHSKDDIASVSNLELEEEQRLHIHSEVGYQLLKKF
PYFSKIAKIVKYHHYPYKESFRKEVPYSSSIIYLADRIDVFIASKIKNENPYSKISLF
LPQLEDYLLRYKGKKLDPKLVDLFLKKICPKEAFWYEILNRSCLEETLEKLLKNFENR
LPTEAFYDFTQLLAYLIDFKSPFTATHSSGVAQTALALANLFNFTYPDLMKMHIAGLL
HDIGKIAIPSTILEKPDRLTEEEYNVMKSHVFFSYKIISKLEVEKDIVEWASYHHETL
DGSGYPFKLREEDLSLGSRIMAVADIFTALMEDRPYKKGLPIKKAMAIIDMLANKNKL
DKNVVYVLKKILRK"
sig_peptide 322896..322961
/locus_tag="Dester_0339"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 322977..323318
/locus_tag="Dester_0339"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(322980..322982,323076..323081,323307..323309)
/locus_tag="Dester_0339"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 323079..323081
/locus_tag="Dester_0339"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 323613..324011
/locus_tag="Dester_0339"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:238032"
misc_feature order(323628..323630,323724..323729,323970..323972)
/locus_tag="Dester_0339"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
misc_feature 323727..323729
/locus_tag="Dester_0339"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:238032"
gene complement(324196..325632)
/locus_tag="Dester_0340"
/db_xref="GeneID:10269556"
CDS complement(324196..325632)
/locus_tag="Dester_0340"
/note="COGs: COG1160 GTPase;
HAMAP: GTP-binding, EngA;
InterPro IPR016484: IPR005225: IPR002917: IPR003593;
KEGG: pmx:PERMA_0019 GTP-binding protein EngA;
PFAM: GTP-binding protein, HSR1-related;
SPTR: GTP-binding protein engA;
TIGRFAM: GTP-binding, EngA; Small GTP-binding protein;
PFAM: GTPase of unknown function;
TIGRFAM: ribosome-associated GTPase EngA; GTP-binding
protein Era; small GTP-binding protein domain"
/codon_start=1
/transl_table=11
/product="GTP-binding protein engA"
/protein_id="YP_004281055.1"
/db_xref="GI:325294541"
/db_xref="GeneID:10269556"
/translation="MKRLPVISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIV
QEADIDDHKVILVDTGGVDTSGEGFAKETTEQAKRAMEEADIIVFVVDGKEGITPLDE
EVAKILRKWKKPIIVAVNKIDEPYMEDLIYDAYRLGFPEVIPISTIHKIGIPTLKERI
LELLPQELRESAKETFEKEEKRKKAEKLISGESREELEELIDTLEGGKDYIIEEDVEK
EPIKVAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYAKIGDDEFIFIDTA
GIRRRGKIKDIEYYSYLRALDAIDRADVVVLLVDAEEGPTDRDTKISGIALDKFKPII
IAVNKIDKLQNQKEWERLHRELDLNFDFIPYAPRVFISAKEKKGLEELIKQIKDVYKQ
YTKKVRTGEFNRALKELMEIHQPPVYKNKVVKIYYGTQVKTKPPTFLLFSNYPEGIPK
SFRRFLENRLREKFGFNKIPIRIVFKKR"
misc_feature complement(324199..325623)
/locus_tag="Dester_0340"
/note="GTP-binding protein Der; Reviewed; Region:
PRK00093"
/db_xref="CDD:234628"
misc_feature complement(325141..325608)
/locus_tag="Dester_0340"
/note="EngA1 GTPase contains the first domain of EngA;
Region: EngA1; cd01894"
/db_xref="CDD:206681"
misc_feature complement(325579..325602)
/locus_tag="Dester_0340"
/note="G1 box; other site"
/db_xref="CDD:206681"
misc_feature complement(order(325189..325197,325264..325266,
325270..325275,325576..325587,325591..325593))
/locus_tag="Dester_0340"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206681"
misc_feature complement(order(325507..325518,325528..325548))
/locus_tag="Dester_0340"
/note="Switch I region; other site"
/db_xref="CDD:206681"
misc_feature complement(325516..325518)
/locus_tag="Dester_0340"
/note="G2 box; other site"
/db_xref="CDD:206681"
misc_feature complement(order(325381..325386,325447..325464))
/locus_tag="Dester_0340"
/note="Switch II region; other site"
/db_xref="CDD:206681"
misc_feature complement(325450..325461)
/locus_tag="Dester_0340"
/note="G3 box; other site"
/db_xref="CDD:206681"
misc_feature complement(325264..325275)
/locus_tag="Dester_0340"
/note="G4 box; other site"
/db_xref="CDD:206681"
misc_feature complement(325189..325197)
/locus_tag="Dester_0340"
/note="G5 box; other site"
/db_xref="CDD:206681"
misc_feature complement(324463..324978)
/locus_tag="Dester_0340"
/note="EngA2 GTPase contains the second domain of EngA;
Region: EngA2; cd01895"
/db_xref="CDD:206682"
misc_feature complement(324931..324954)
/locus_tag="Dester_0340"
/note="G1 box; other site"
/db_xref="CDD:206682"
misc_feature complement(order(324511..324519,324610..324612,
324616..324621,324928..324939,324943..324945))
/locus_tag="Dester_0340"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206682"
misc_feature complement(order(324859..324900,324907..324909))
/locus_tag="Dester_0340"
/note="Switch I region; other site"
/db_xref="CDD:206682"
misc_feature complement(324868..324870)
/locus_tag="Dester_0340"
/note="G2 box; other site"
/db_xref="CDD:206682"
misc_feature complement(324802..324813)
/locus_tag="Dester_0340"
/note="G3 box; other site"
/db_xref="CDD:206682"
misc_feature complement(order(324727..324732,324799..324804))
/locus_tag="Dester_0340"
/note="Switch II region; other site"
/db_xref="CDD:206682"
misc_feature complement(324610..324621)
/locus_tag="Dester_0340"
/note="G4 box; other site"
/db_xref="CDD:206682"
misc_feature complement(324511..324519)
/locus_tag="Dester_0340"
/note="G5 box; other site"
/db_xref="CDD:206682"
gene complement(325653..326960)
/locus_tag="Dester_0341"
/db_xref="GeneID:10269557"
CDS complement(325653..326960)
/locus_tag="Dester_0341"
/note="COGs: COG3547 transposase and inactivated
derivatives;
InterPro IPR003346;
KEGG: llo:LLO_2911 transposase;
PFAM: transposase, IS116/IS110/IS902;
SPTR: transposase;
PFAM: transposase IS116/IS110/IS902 family; transposase"
/codon_start=1
/transl_table=11
/product="transposase IS116/IS110/IS902 family protein"
/protein_id="YP_004281056.1"
/db_xref="GI:325294542"
/db_xref="GeneID:10269557"
/translation="MSPPEIRDYSKEATFKGRRLDFSLGNKPRAWRLADASCRLIIVA
GSAVLEYGNSSEAEVAKHKTYQGVEMKEKVEKTLYVGVDYHKNSFTAAYLDCLTGILN
TKKYEAEELEKFKNHLTTFRKKGYSVKVAVETLTGVTFFTEEIRNCVDEITYVNTNKF
KNILKGVNSAKNDRIDAETIAIYYEMGLLPTVYVPTRKEKELRIKMKERDSFVDMRKG
VINRLHSLLLEYGIKTNKRELTTKKGMERIKEETKKKVPPSLRETIWRQIETIEYLTD
KIRETEEDIKSFIGEDEELKGKVELLKSIPGVGDIVAIAFISAVCNEERFENGDKVAA
YFGLVPRINSSGDEVRNGRITKKGDSRTRNKIIQATRALLNSKLDNSVKRFYEGLVKK
GLEKKKALIAAARKLVKVMFAVLRERRQFMDFVENKCNLCVGG"
misc_feature complement(326295..326726)
/locus_tag="Dester_0341"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:216564"
misc_feature complement(325800..>326498)
/locus_tag="Dester_0341"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature complement(325800..326066)
/locus_tag="Dester_0341"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene complement(327032..328624)
/locus_tag="Dester_0342"
/db_xref="GeneID:10269558"
CDS complement(327032..328624)
/locus_tag="Dester_0342"
/note="InterPro IPR010095;
KEGG: hth:HTH_1865 transposase;
PFAM: transposase, IS605 OrfB, C-terminal;
SPTR: transposase;
TIGRFAM: transposase, IS605 OrfB, C-terminal;
PFAM: Probable transposase;
TIGRFAM: transposase, IS605 OrfB family, central region"
/codon_start=1
/transl_table=11
/product="transposase, IS605 OrfB family"
/protein_id="YP_004281057.1"
/db_xref="GI:325294543"
/db_xref="GeneID:10269558"
/translation="MLSSRVLSIRISGKDRKEKVRKLLFDLAHFKNLWIILIRRYKEL
YGYYSTDQSILYGLIADKEYSSKKEGKLRKFKEVRENILKDEELTGLLKALKEQKRKV
DNNYLLQQVIRSVVKSFNDYRKAYKEYQKNPKKFKGTPKPPKSKKLKFLMNFSVELNV
NTFERLEDSILIKLRINSKEFLKVKLPKNFNFEIKSIRLKLFGTDVYADVVYKVETLE
LRTTGEYTAGIDLGLNNLIALVSTNPNLESLIVSGKEIKAFNQWFNKEKAKLQSEIDT
IRNKLSQIEEEEETQNLKQLLTEKLIILKELSAYRKRRIDNDFHKISRKVVDILKATD
HKKLYIGKGATESKDGINIGKKNNQHFVSVPFRRLIGLIKYKAEEVGIKALEVEEAFT
SKTSPFADILEVRKIGKKYLKAKEKEDKTLLQELLNQLKSLRKAIRKFRGLLKDKVSG
AFFNADLVGAYNILRVGENSLRLIEDLKLLFVKLCNPVKFRLIEFFYKVSCGTRKGAG
SSSHNAGLSPFDYQSCGNLTTF"
misc_feature complement(327599..>328087)
/locus_tag="Dester_0342"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:216470"
misc_feature complement(327446..327688)
/locus_tag="Dester_0342"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:233563"
misc_feature complement(327230..327529)
/locus_tag="Dester_0342"
/note="Putative transposase DNA-binding domain; Region:
OrfB_Zn_ribbon; pfam07282"
/db_xref="CDD:115907"
gene complement(328782..330947)
/locus_tag="Dester_0343"
/db_xref="GeneID:10269559"
CDS complement(328782..330947)
/locus_tag="Dester_0343"
/note="COGs: COG1112 Superfamily I DNA and RNA helicase
and helicase subunits;
InterPro IPR004483;
KEGG: nis:NIS_1242 DNA/RNA helicase;
SPTR: DNA/RNA helicase;
TIGRFAM: DNA helicase,
TIGRFAM: DNA helicase"
/codon_start=1
/transl_table=11
/product="DNA helicase"
/protein_id="YP_004281058.1"
/db_xref="GI:325294544"
/db_xref="GeneID:10269559"
/translation="MPILLEGVLEGKRLQRELKHLGLRKHDVKSVYIANGSTLVFLKD
ESLCKVYEELIPNQETIKEIVTVHNYVEKFKYLIDIERIAEIEAQEAEIRKLSGRERE
LLGRAILDLKGTKAGTKFHLHLVRFWREKPIETEIGTGDIVLVSKGNPLKSELLGTVV
RVTEKTMTVAFENRPPNWVYKKGVRVDLYVNDVTFKRMEENLEAFRHATKRQREIRNI
IIGLKEPEKVEKEEFEVVDKRLNKTQINAVKQALGAKDFYLIHGPPGTGKTSTITELI
VQLVKRGNKVLATADSNIAADNILLNLSKYSELKLVRIGHPARVLEELEKFSIYTLYE
EHEKTQKIKEGWERVRELIEKREQFTKPLPHLRRGMSDDEIVFFGRKGKSFRGIPKKT
MRSMANWILTNYEIDVRIKALKEMESIVLRQIIASADVVISTNSMVKSELLEGFHFDV
AVIDEGSQQVEPSTLIPIMKADKFYIAGDHKQLPPTVTSEEAKELEKTLFERLINSHS
ELSSMLQVQYRMNEKIMEFPNREFYEGKLRAAEIVKNHTLADFDLKEPEKFKEILNPS
EPLAFLDTSDINAYEFQPEGSTSYENYEEAKIAISIAEELCKIGVDKKDIGIITPYAA
QVKLIKQLLLEKDLKVEVNSVDGFQGREKEVIIISFVRSNDEGEIGFLKDLRRLNVAI
TRPKRKLIAIGNAETLSNHEVYKRFIENIKEKGTFLKLN"
misc_feature complement(328803..330668)
/locus_tag="Dester_0343"
/note="DNA helicase, putative; Region: TIGR00376"
/db_xref="CDD:232945"
misc_feature complement(<330051..330209)
/locus_tag="Dester_0343"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:222005"
misc_feature complement(328860..329465)
/locus_tag="Dester_0343"
/note="AAA domain; Region: AAA_12; pfam13087"
/db_xref="CDD:221913"
gene 331031..332407
/locus_tag="Dester_0344"
/db_xref="GeneID:10269560"
CDS 331031..332407
/locus_tag="Dester_0344"
/EC_number="6.3.2.8"
/note="COGs: COG0773 UDP-N-acetylmuramate-alanine ligase;
HAMAP: UDP-N-acetylmuramate-alanine ligase;
InterPro IPR005758: IPR000713: IPR013221: IPR004101;
KEGG: gsu:GSU3068 UDP-N-acetylmuramate--L-alanine ligase;
PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur
ligase, C-terminal;
PRIAM: UDP-N-acetylmuramate--L-alanine ligase;
SPTR: UDP-N-acetylmuramate--L-alanine ligase;
TIGRFAM: UDP-N-acetylmuramate-alanine ligase;
PFAM: Mur ligase family, glutamate ligase domain; Mur
ligase family, catalytic domain; Mur ligase middle domain;
TIGRFAM:
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase; UDP-N-acetylmuramate--alanine
ligase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_004281059.1"
/db_xref="GI:325294545"
/db_xref="GeneID:10269560"
/translation="MIGKLKIHIVGIGGIGMSGIALILKGQGYEVQGSDIKESSMVKK
LREEGIRVFIGHKAENVHGANLVIHSSAVKFDNVELQEAKNLGIPVIPRADILSDIMR
FKEGVAVAGTHGKTTTSSMIATIFHIAGLKPTILVGGRLSILGGVNAQSGDGNWLVAE
ADESDGTFLKLTPTFSVITNIDADHVDYYGSFENLKEAFLDFANRVSFYGKVFLCGEC
QNVKEIVGSIYKRKLIYGFSEKFDLYAKEIVPVGLGTIFDVYYKSKKLGRVKLNVPGK
HNILNALGAIGVSLEVGVSFNQIAESLEMFRNANRRMELKGTVNGITFIDDYAHHPTE
IETSYKALKSSFPDRRIVVLFQPHRFSRTNLLWKEFVKVLKEIDNLFISDIYPAGEKP
IKGINAKNLARECGAVYCGSLKKACRTIKLELKPGDVFLSMGAGDVTKAFELITGEKD
EQEDYLSF"
misc_feature 331109..332350
/locus_tag="Dester_0344"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:234757"
misc_feature <331109..331342
/locus_tag="Dester_0344"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:216373"
misc_feature 331361..331867
/locus_tag="Dester_0344"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:219763"
misc_feature 331961..332218
/locus_tag="Dester_0344"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:217262"
gene 332379..334895
/locus_tag="Dester_0345"
/db_xref="GeneID:10269561"
CDS 332379..334895
/locus_tag="Dester_0345"
/note="COGs: COG0749 DNA polymerase I - 3'-5' exonuclease
and polymerase domains;
InterPro IPR018320: IPR020046: IPR020047: IPR001098: IPR
002421: IPR008918;
KEGG: ate:Athe_1441 DNA polymerase I;
PFAM: DNA-directed DNA polymerase, family A, palm domain;
5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3'
exonuclease, SAM-fold domain;
SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix
motif, class 2; DNA-directed DNA polymerase, family A,
palm domain;
SPTR: DNA polymerase I;
TIGRFAM: DNA polymerase 1;
PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3'
exonuclease, N-terminal resolvase-like domain; DNA
polymerase family A;
TIGRFAM: DNA polymerase I"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_004281060.1"
/db_xref="GI:325294546"
/db_xref="GeneID:10269561"
/translation="MSKKTIYLFDGTSLAYRAYYAIKDLTTSKGFPTNAIYGFIRMFL
KLYKDFKPNYIAVAFDVGKKTFRSKLLKEYKANRKPTPDSFKLQLPYIKKFLECLGIT
ILEKEGFEADDILGTAAKKFASEGYRVFVVTPDKDMRQLIDGKISVIAINKTGQKEIY
DLVSFKEKYGIEPEQIPDFFGLVGDSVDNIPGVPSIGEKTAQKLIAEFGNLENLYKNL
SKLTSKRREVLEKFKEQAFLSRELAKIKKNVPIEISLENLKVKEPQGKCLGEFLKELE
MRSIVSELKKLFPSIDFGEFDKFKKSKKLSKEEFKRKIQPADLFSTPEVAVIHDFERV
IAINEGYVEVDFKEIEEFLPEKGKIYTFDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP
LQKDYSSKDILKKRLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYESIEHPLT
FVLYKMEKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKFNLNSPKQLSKILFE
KLKLKPLKKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDE
DGRVRTTFIQTGTATGRLSSAEPNLQNLPVSDEISKKIRYAVTAPAGYNLVWADYSQI
ELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYG
MSPHGLSERLGISVEEAEKYIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPL
PELKSSNKNIRSFGERAAVNATIQGTAADIMKLAMVKLYKKLEKLGAYMVLQVHDEIV
IEALEEKTEEIMKIVKETMENVVEFSVPLTVDVKVGKHWS"
misc_feature 332385..334889
/locus_tag="Dester_0345"
/note="DNA polymerase I; Provisional; Region: PRK05755"
/db_xref="CDD:235591"
misc_feature 332394..332879
/locus_tag="Dester_0345"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature order(332406..332408,332556..332558,332706..332708,
332712..332717,332781..332783,332787..332789)
/locus_tag="Dester_0345"
/note="active site"
/db_xref="CDD:189029"
misc_feature order(332406..332408,332712..332714,332781..332783)
/locus_tag="Dester_0345"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 332574..332612
/locus_tag="Dester_0345"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature order(332706..332708,332715..332717)
/locus_tag="Dester_0345"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature order(332781..332783,332787..332789)
/locus_tag="Dester_0345"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature 332895..333113
/locus_tag="Dester_0345"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature order(332925..332948,332952..332981,332985..332996)
/locus_tag="Dester_0345"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature order(332931..332933,332940..332942)
/locus_tag="Dester_0345"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature 333381..333743
/locus_tag="Dester_0345"
/note="DnaQ-like (or DEDD) 3'-5' exonuclease domain
superfamily; Region: DnaQ_like_exo; cl10012"
/db_xref="CDD:245226"
misc_feature order(333462..333467,333471..333479)
/locus_tag="Dester_0345"
/note="active site"
/db_xref="CDD:176647"
misc_feature order(333462..333467,333471..333476)
/locus_tag="Dester_0345"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176647"
misc_feature 333768..334889
/locus_tag="Dester_0345"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature order(334017..334019,334029..334031,334038..334043,
334113..334121,334125..334127,334131..334142,
334236..334241,334323..334325,334383..334385,
334395..334397,334647..334649,334668..334670,
334755..334763)
/locus_tag="Dester_0345"
/note="active site"
/db_xref="CDD:176474"
misc_feature order(334017..334019,334029..334031,334038..334043,
334113..334121,334125..334127,334131..334142,
334419..334421,334644..334649,334656..334658,
334668..334670,334755..334763)
/locus_tag="Dester_0345"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature order(334236..334241,334245..334247,334323..334325,
334383..334385,334395..334397,334761..334763)
/locus_tag="Dester_0345"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene 334898..335560
/locus_tag="Dester_0346"
/db_xref="GeneID:10269562"
CDS 334898..335560
/locus_tag="Dester_0346"
/note="COGs: COG4122 O-methyltransferase;
InterPro IPR002935;
KEGG: dhd:Dhaf_4391 O-methyltransferase family 3;
PFAM: O-methyltransferase, family 3;
SPTR: uncharacterized protein;
PFAM: O-methyltransferase"
/codon_start=1
/transl_table=11
/product="O-methyltransferase family protein"
/protein_id="YP_004281061.1"
/db_xref="GI:325294547"
/db_xref="GeneID:10269562"
/translation="MTFKRWKNLSEIIPEEIEIFTGSFGKKESILLEMEIFAKKNKIP
ILLPSAAIVLRLLVSLTKPKRVLEIGTGIGYSTLNIYFAHPEAKITTVDSNRKRSVVA
KKFFKRAGIEIEVLEADGFKVIRDYLAENEKFDFIFIDSVKSEYPFFNFKFQALLKSK
GIAVFDNVLFRGYIAGKTFHPRYTRTVALLKKFLLDVRKYPGFETYLVPVGDGLLISV
KR"
misc_feature 334916..335557
/locus_tag="Dester_0346"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4122"
/db_xref="CDD:226607"
misc_feature 335090..>335323
/locus_tag="Dester_0346"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(335102..335122,335174..335179,335249..335257,
335315..335317)
/locus_tag="Dester_0346"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(335623..336597)
/locus_tag="Dester_0347"
/db_xref="GeneID:10269563"
CDS complement(335623..336597)
/locus_tag="Dester_0347"
/note="InterPro IPR002559;
KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein;
PFAM: transposase, IS4-like;
SPTR: transposase IS4 family protein;
PFAM: transposase DDE domain"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_004281062.1"
/db_xref="GI:325294548"
/db_xref="GeneID:10269563"
/translation="MPKLRKKPILSGMKAKRLNSHKVLNLSKTYMNRRGQAVLVYLYP
FKTKRGRPKKYPDEIILTLLFLQVAWNLSFRDLEYLAVQIFGRENIPDFSTYYYRLKQ
LPSILLVDFLNFVSRRLLGKYHKELRFLIIDGTGFKYNEIYPLKILRGKEIKEVKSHV
KVVVLSVHLKDGKRFILTALPGESYASEVKLGEKIVRWLNERGFIWRALKGKPFLGDK
AYDSIKFIELVLLVGLKPYIKVRETLRKGIKSEIRLKCKELLESDEIYRFRGLIESIF
GEVKQDVGSYEKTKSFHIAQLFVLAKFILFNMGVLFFVWMIFQTLSVL"
misc_feature complement(336181..>336456)
/locus_tag="Dester_0347"
/note="Transposase DDE domain; Region: DDE_Tnp_1_5;
pfam13737"
/db_xref="CDD:222354"
misc_feature complement(335674..>335973)
/locus_tag="Dester_0347"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
gene 336684..337940
/locus_tag="Dester_0348"
/db_xref="GeneID:10269564"
CDS 336684..337940
/locus_tag="Dester_0348"
/note="KEGG: dak:DaAHT2_2111 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281063.1"
/db_xref="GI:325294549"
/db_xref="GeneID:10269564"
/translation="MGIDKFALTLGLGIGIVTSQAIAAISVPGYEGELKTQVEFREDI
KDRNSIPFDTYLKLDIRDLKGNSDLHFYGKLWKDLGYGTDWNADIYQLFIEVPFENKQ
SFLSIGRQFISEGFETYIADTVKYTHRLKNGLRYTFYLGKPRFFEPNTPDGDDFLAGF
KFDYKGYFFGFEHLRNDGSVKKSSFVVGNYKYLSREISYYTRFEIDAAHGEFVDANLG
FNYYPTRKLRINIETEYYDPSYTYDSFKLEDPIFSLFSSGRQLRFTQSSYYDITEKWQ
LFESYTFSDLQRSEKDNGHLAKAGFVRDTWFENGLRVYGALLYGNSWVGTLRGLEFGF
TKWINSKLTFVGSADIARYDKITYGKHWANAFYLRGIYSTTEFSNLEFGLEDRTNEDF
KRDMRVVLRYNYFFFGGKDRSKEEKK"
sig_peptide 336684..336752
/locus_tag="Dester_0348"
/note="Signal predicted by SignalP 3.0 HMM"
gene 337937..338542
/locus_tag="Dester_0349"
/db_xref="GeneID:10269565"
CDS 337937..338542
/locus_tag="Dester_0349"
/note="KEGG: dap:Dacet_0794 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281064.1"
/db_xref="GI:325294550"
/db_xref="GeneID:10269565"
/translation="MRILLQVLILVIASMYVFSCDKGGNVNYKKELGATAKFHHKDHK
HFIEEHGCIPCHNMNVEMSWKDLESAEKGSKKLIMPSKVTCHYCHNNPKSPAPNAPRN
CYICHFNMKEIEPADHKTGNWLKTHKFAYEGEPKRCSECHRQKDCIDCHSQRDVIQHR
VHPRNYEYTHGIEAAADPGKCSRCHQIGFCMECHTKGTWTK"
sig_peptide 337937..337993
/locus_tag="Dester_0349"
/note="Signal predicted by SignalP 3.0 HMM"
gene 338539..339408
/locus_tag="Dester_0350"
/db_xref="GeneID:10269566"
CDS 338539..339408
/locus_tag="Dester_0350"
/note="KEGG: dak:DaAHT2_2113 hypothetical protein;
SPTR: uncharacterized protein;
PFAM: Doubled CXXCH motif (Paired_CXXCH_1)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281065.1"
/db_xref="GI:325294551"
/db_xref="GeneID:10269566"
/translation="MKKAILLLGIVLSLNSNTFASECGGKGYTGKDSRYCLKCHSGCP
IVHPVKGILVGETECIKVPLGFPLKNRRLTCTTCHDMNSNNKDFLRSSKPIKNKMDFC
FECHNPACYKKFNPHEVIASNLPKKEKLKACIYCHGVGAKLEAYNSCVGCHTKTPHLG
VLEHMLAPREEVEKLVKDKKKVIDIVSIKDLDPRLDEATLELRKSHVILVKGKIECIT
CHNPHPQIAISTKAMDEVWREIEKRDIEYKLKKLYGIIKEYKINFQGTKFMSQSLRGG
QLCQNCHPINLLK"
misc_feature 338539..339003
/locus_tag="Dester_0350"
/note="cytochrome c nitrite reductase pentaheme subunit;
Provisional; Region: PRK11659"
/db_xref="CDD:183264"
sig_peptide 338539..338598
/locus_tag="Dester_0350"
/note="Signal predicted by SignalP 3.0 HMM"
gene 339419..340513
/locus_tag="Dester_0351"
/db_xref="GeneID:10269567"
CDS 339419..340513
/locus_tag="Dester_0351"
/note="KEGG: ddf:DEFDS_0742 multiheme C-type cytochrome;
SPTR: Multiheme c-type cytochrome"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281066.1"
/db_xref="GI:325294552"
/db_xref="GeneID:10269567"
/translation="MRAFILGIAGAMAISGTALASGIGDDGCLVCHRLKGLFAVDKNN
KVKDCSINEALYAHSIHRNIGCTECHNKIEQYPHKPGNAVVNCANRCHVIDPSTKKPF
SHENVFKTWKESVHGKNFEKAPDIYPYCSYCHTNRLLVDVKKFETLEGSFNRCSICHE
NKDWTLDRLAHVASREDIPVIKNGYISQFVKTRRDGWEIVELCASCHEDEKKMEKALE
IEGIHNKFAKEHVLTAVESYKVTMHSKMLYLDRSDTRAADCLDCHTNKNGNFHDIFHK
EDPRSSINEKNIELTCGRATECHPLAPIKDMKKFATTKWVHMHPVPDSLGQKIVKIVE
EFMFWLTTSVLLFGVVIIGLDLLKNLRRKH"
sig_peptide 339419..339478
/locus_tag="Dester_0351"
/note="Signal predicted by SignalP 3.0 HMM"
gene 340513..341445
/locus_tag="Dester_0352"
/db_xref="GeneID:10269568"
CDS 340513..341445
/locus_tag="Dester_0352"
/note="KEGG: cla:Cla_0807 cytochrome c family protein;
SPTR: Cytochrome c family protein;
PFAM: Cytochrome b(N-terminal)/b6/petB"
/codon_start=1
/transl_table=11
/product="cytochrome c family protein"
/protein_id="YP_004281067.1"
/db_xref="GI:325294553"
/db_xref="GeneID:10269568"
/translation="MGLWEVIKKRFRIRPEQDKLLIVDGEKIMIQKFTLYQRLLHVGM
FATFIWQVITGYPLKFYDTAWAKPLIEILGGVSGEMTIHRISGFIMFSDFLLTVLYVV
LLLIVNWDLAKKDFFGYFKLVPGPADVTFIHYVKYLLGFRKVPPDWDEYIWVDKFDFW
AVGWGMLAIGITGWILWLPEVFTGYLGLPPETIQIAYLMHSDEATLALGWIALAHMYM
VHYGPNKFPMDWIWLSGTASEIEWIEERPRSYRRIIKAVAENEPHLLEKYPFLKERYQ
FVLEVEKLPEEEMIEKMHEYAHHLLEKEVEGRSA"
misc_feature 340597..>341166
/locus_tag="Dester_0352"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cl00859"
/db_xref="CDD:242146"
misc_feature 340600..341277
/locus_tag="Dester_0352"
/note="formate dehydrogenase, gamma subunit; Region:
formate-DH-gamm; TIGR01583"
/db_xref="CDD:130645"
gene 341445..342164
/locus_tag="Dester_0353"
/db_xref="GeneID:10269569"
CDS 341445..342164
/locus_tag="Dester_0353"
/note="KEGG: dap:Dacet_0787 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281068.1"
/db_xref="GI:325294554"
/db_xref="GeneID:10269569"
/translation="MRRYLIAAFLISTVAVAAENPLLTAPSNNASEWSKKLKDFEKPE
MPDLKEYPKPFHSPNSYKYRVNDVCVECHTFAAHKKDEKYAPFYNAHSTFMSCNTCHF
VKEGVTYKWAEIVDGKVVLKEKGDFYGLRYIQAGDRVMLSGQDSTAKIVPVYKGVPVE
IPLEGNESLLKDVKAIASMHNALSNEPLRCDDCHRRNGKMDFTALWFSPDRVDDLEKN
EVVEGLKEYKVIHFPKFIWQE"
sig_peptide 341445..341495
/locus_tag="Dester_0353"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature <341649..>341825
/locus_tag="Dester_0353"
/note="octaheme c-type cytochrome, tetrathionate reductase
family; Region: octaheme_Shew; TIGR04315"
/db_xref="CDD:234538"
gene 342171..342971
/locus_tag="Dester_0354"
/db_xref="GeneID:10269570"
CDS 342171..342971
/locus_tag="Dester_0354"
/note="InterPro IPR001258;
KEGG: dak:DaAHT2_2116 hypothetical protein;
PFAM: NHL repeat;
SPTR: hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281069.1"
/db_xref="GI:325294555"
/db_xref="GeneID:10269570"
/translation="MRFLMLFFILIFSVAASAGEIKGDWKFPSDIAVSSNKLYVVDGL
NNRIAIYNFNGEHISDIEIDSPFGIYVDKKGFLYVTNQKGIVYVLDSLGNLKEKINVS
GRPIDIVKIGNRLFITNGKTNTIDVYSEDGKFIKRLGGKGSAPGYFVGPFMMDRSRNL
IYVVDSINARIQEFDKKGNFVRSFGVFGVEEGSLFRPKGVAFCNGNLVVTDGITGSLQ
LFNIYGAFEKVITKNLYYPTAVACYDKTVFVLEPLKNKVSTFKIQGVK"
sig_peptide 342171..342224
/locus_tag="Dester_0354"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature <342501..>342758
/locus_tag="Dester_0354"
/note="haloacid dehalogenase-like hydrolase family
protein; Region: PLN02919"
/db_xref="CDD:215497"
gene 342971..346048
/locus_tag="Dester_0355"
/db_xref="GeneID:10269571"
CDS 342971..346048
/locus_tag="Dester_0355"
/note="InterPro IPR010177;
KEGG: ddf:DEFDS_0746 multiheme C-type cytochrome;
SPTR: Multiheme c-type cytochrome;
TIGRFAM: Doubled CXXCH motif;
PFAM: Doubled CXXCH motif (Paired_CXXCH_1);
TIGRFAM: doubled CXXCH domain"
/codon_start=1
/transl_table=11
/product="cytochrome C family protein"
/protein_id="YP_004281070.1"
/db_xref="GI:325294556"
/db_xref="GeneID:10269571"
/translation="MRKTLAVLLSVLILPSVSEAKLSKTMRQECLVCHENWLLEEKID
SSSLLTTNSIQAADKLMCLSCHDGSLADDRLTFIGFGHFSHPVDKKIPKDFKLPKDFP
TKDGKLYCGTCHTPHTKAGSEKKLDYTFMRKQNKNSSLCIDCHKENAAHGMNHPILED
TAGKLTSTEILKIKNIGGKVTKNNEVQCESCHSAHRGKANYALVEPLANSQLCTACHT
QELNSKEHVNPRNHKIHVNIPEYMTVTEFIRQRLPQNTVECFTCHKMHKEPNPNLTVL
SANELCSSCHTAESPVVHSPHNKDNRGCLMCHTAHKAKTDEYLFAVVPSSTGGYKNYD
ISSRVCVSCHNGGISKVKVGPATASHRGECTDCHNPHIWDPNNPNKKVSVNAKGTPRN
SFLKISSPELCIMCHGKRSVEGTFHDFSGKKIKVKNVLGERVSQAGLCESCHAPHKAV
GPYLWGVKLSRSAKIYAKKLGIKDSYSKACLSCHYPGGIGEDIGKISHPVGKKLQAKT
DLPLSKTGIMTCSTCHDPHKWTSIEGSKSKAATSFLRVPEWNLCLKCHSNKSGVLINA
HSDIKDVNVLGETPDKAGVCAACHVPHRAVGRFLRGIGDFSSKEKEGDFCLECHGKDG
IAKDKVMGSSYPDHPMNIENPSKELPGKLITCFTCHDAHSTLEFMLRKSVANDSALCL
TCHKGKDTKGTSHDFLKKKILPPQERIKIKERGKCSGCHTPHNPKFKLLWSRDLGEGE
TINIKMCGSCHTKGGIAGNKTVGEHTHPIGKKVKSPESIKLVEYSGLPLIDQTTGCPV
KNGKSGLMDCVTCHNPHNGADKERLIRYPIEGDSKLCISCHTQQARVIGTDHDMRVVN
KNFKNVLGKDVLKDGVCSACHVPHRAKDNLLWAIDVKRITDNKLSNYCLTCHSEDGIA
KEKSIKYYFHPSKKEGIVIRDMDRPGRSGDWPIYDESGKRVKVGGQITCETCHNPHIW
SRWSDRGPGKPVEGNITNSFLRNDQLKGSICVDCHGIEALYRYKFFHSKNVHH"
sig_peptide 342971..343030
/locus_tag="Dester_0355"
/note="Signal predicted by SignalP 3.0 HMM"
misc_feature 343151..344077
/locus_tag="Dester_0355"
/note="decaheme c-type cytochrome, DmsE family; Region:
decahem_SO; TIGR03508"
/db_xref="CDD:234238"
misc_feature 343742..343828
/locus_tag="Dester_0355"
/note="Doubled CXXCH motif (Paired_CXXCH_1); Region:
Paired_CXXCH_1; cl09905"
/db_xref="CDD:214160"
misc_feature 344618..345604
/locus_tag="Dester_0355"
/note="decaheme c-type cytochrome, DmsE family; Region:
decahem_SO; TIGR03508"
/db_xref="CDD:234238"
misc_feature 344936..345037
/locus_tag="Dester_0355"
/note="Doubled CXXCH motif (Paired_CXXCH_1); Region:
Paired_CXXCH_1; cl09905"
/db_xref="CDD:214160"
gene 346076..346225
/locus_tag="Dester_0356"
/db_xref="GeneID:10269572"
CDS 346076..346225
/locus_tag="Dester_0356"
/note="KEGG: apa:APP7_0361 bicyclomycin resistance-like
protein;
SPTR: Bicyclomycin resistance-like protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281071.1"
/db_xref="GI:325294557"
/db_xref="GeneID:10269572"
/translation="MAREVSSRDIEKEAWIVLIATLAILLLPILGVWLVKFVHWYSES
IFMWF"
gene 346236..346367
/locus_tag="Dester_0357"
/db_xref="GeneID:10269573"
CDS 346236..346367
/locus_tag="Dester_0357"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281072.1"
/db_xref="GI:325294558"
/db_xref="GeneID:10269573"
/translation="MGRALKNIFFFRKWISAVELVLYIFMLLTLFLTAYKHLFGGHH"
gene complement(346603..350178)
/locus_tag="Dester_0358"
/db_xref="GeneID:10269574"
CDS complement(346603..350178)
/locus_tag="Dester_0358"
/note="KEGG: mca:MCA0424 cytochrome c family protein;
SPTR: Cytochrome c family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281073.1"
/db_xref="GI:325294559"
/db_xref="GeneID:10269574"
/translation="MAAKKPSEDPGLAPDVNNETDFRGNVAYDMDQGTPDKVFTCASC
HSGGIMEFDRDSGKRHDEVSDWDDAKDGTGFFSNATYSDSEVDGDAFSYTPDEYSRGY
LGKPHKFNWKKSGVLDTDCFLCHADRGQNKSVQSGMWTADNPTPANPRVFIFEKKDAE
GKVVEISLGFPPSLNSTEISNNYTIDSVAFYSNPLERIINLYYNEEITNCLENINAAD
NMTLRTIVVSQLTEAIRKGDLYSPDYNINIVNPADNSTICTMNNTTAPALGNFTSTFF
IDPGAPNFSARDYLRNAFFESTVEGQPYVGAGMFLRATTINDMFSYNPMDTSNPKPFV
NLGRAGFFFGWADTGTLMGVAHPDDPSKPLAFVKLEKQEDGTFKAVAYYATDADLSSV
KLPILETSGHYTLCKADSSKEAGVSKSLPADRKDDELTLMCAQCHFAIPDEGNRWFDM
NGKSHPSWYVRRGIIGMGADVVKRAAVFSRETEGNTTDAPIFVNPDGTIADPNNATAG
LPSGYDVHFAADKGNLSCLSCHGQDNLSDEEKLHHNPHNFLKGNDPAGEVMPALDYNP
SLQTCTKCHWGSDAAAAKEHEAYFGPAASVHINSMMCQVCHVPYKTYWSFRFFNDLVG
YSSQFDNRFMKFVVDNGNVTMYQFPPEWAIPAFSPSPTYGVNYAFTITQTTNDGGDAI
VPMTMIDMDPYRALMRWNDNGTMFGMWATGADPQMKPFLFPWRWAPAIVRRHTIDDNG
NDVVKAGLINPITVATWMDASTGRVLFVRELNAAVKGLAVDPTTGKPVGRSTVDPEDP
QKEVPAITMAPVSQAQADTGKPAISMKDLNGNDTGMVAAVKLINGKFIYDNDGDMVPE
IDSDYEYDAMKEALTQVLNKEDPNHSHNPVIYLGIAPFGVDHGVLPAKYGLGAQKSGP
LSCNACHNSDESKNRYSPAVKSGNFNAGRFVTLVPFALPDKAIKESKAYGGWHVPKGV
TTVKTPDGREIMGLTQGALAQFESVPVESKEYAAFALVTREGGTVSKEGIVISVSPGA
VDVPTIIKVEKAEVPELQSSVLEEASKEGIKTPVLASEILHIHTKTNRFNSPIQITLP
YDPTKVTGKVSLFTSEDGKTWTKIGDFDVDSNNPYVTFSRSTLSYFAIVGTASTESYP
QTTTTTATGGGGCSIAPAVSPISGILNFFLMALGALGLRFRRKKH"
misc_feature complement(<348337..>348639)
/locus_tag="Dester_0358"
/note="octaheme c-type cytochrome, tetrathionate reductase
family; Region: octaheme_Shew; TIGR04315"
/db_xref="CDD:234538"
gene complement(350197..350595)
/locus_tag="Dester_0359"
/db_xref="GeneID:10269575"
CDS complement(350197..350595)
/locus_tag="Dester_0359"
/note="KEGG: gem:GM21_3107 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281074.1"
/db_xref="GI:325294560"
/db_xref="GeneID:10269575"
/translation="MASKSLRKVLSLASLFTMGTLAYSSSAYPHPAVPLKDIDGNPIT
LDTSKCIKIGNKEYCEGKPVSWEATCGACHKEITGDVTSGVHFPGPVHAAYHIGRGWN
ELADNFGAERVKEGKDYRKFLRSFGDDGAW"
sig_peptide complement(350524..350595)
/locus_tag="Dester_0359"
/note="Signal predicted by SignalP 3.0 HMM"
gene 350809..351939
/locus_tag="Dester_0360"
/db_xref="GeneID:10269576"
CDS 350809..351939
/locus_tag="Dester_0360"
/note="InterPro IPR001584;
KEGG: saf:SULAZ_1706 transposase;
PFAM: Integrase, catalytic core;
SPTR: transposase;
PFAM: Integrase core domain"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_004281075.1"
/db_xref="GI:325294561"
/db_xref="GeneID:10269576"
/translation="MKQLKRFKGTSLHISSTNTAFKETLKEGRRVKKKLDLTKDRNVK
RRLKWIEYYHKTGNARKTCRYFGISPTTFYKWKKRYDKYGIEGLQDRNKRPHKVRQPQ
TEPEIEHIIVTIREKFPTWSKEKIAAFMERYLNVKISSSTVYRVLKRHGLIERTWKLK
STYKRKKQKGKKNRTRKGLRADKPGTILMDVKYLYWCGKTFYQFTAIDKFTRIAFAKV
YSTKSSRSGRRFFEELEKFLPFKIEKVQTDNGSEFLGELDEYLKRKGIEHYFSYPKSP
KTNAHVERFIQTTESELWMIEGTEPTVDEMNKKLFEYLKIYNFLRPHHSLNYKTPAEK
FEDYIRSHQGVHHVLNSNRYLTLKNNFLYYSPSSKCRLSSAG"
misc_feature 350941..351096
/locus_tag="Dester_0360"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:222191"
misc_feature 350944..351261
/locus_tag="Dester_0360"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
misc_feature 351022..351249
/locus_tag="Dester_0360"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature 351103..351822
/locus_tag="Dester_0360"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:225361"
misc_feature 351358..351687
/locus_tag="Dester_0360"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature 351598..351801
/locus_tag="Dester_0360"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene 351917..351993
/locus_tag="Dester_R0009"
/db_xref="GeneID:10269577"
tRNA 351917..351993
/locus_tag="Dester_R0009"
/product="tRNA-Thr"
/db_xref="GeneID:10269577"
gene 351998..352083
/locus_tag="Dester_R0010"
/db_xref="GeneID:10269578"
tRNA 351998..352083
/locus_tag="Dester_R0010"
/product="tRNA-Tyr"
/db_xref="GeneID:10269578"
gene 352091..352167
/locus_tag="Dester_R0011"
/db_xref="GeneID:10269579"
tRNA 352091..352167
/locus_tag="Dester_R0011"
/product="tRNA-Gly"
/db_xref="GeneID:10269579"
gene 352174..352250
/locus_tag="Dester_R0012"
/db_xref="GeneID:10269580"
tRNA 352174..352250
/locus_tag="Dester_R0012"
/product="tRNA-Met"
/db_xref="GeneID:10269580"
gene 352478..354307
/locus_tag="Dester_0361"
/db_xref="GeneID:10269581"
CDS 352478..354307
/locus_tag="Dester_0361"
/EC_number="2.6.1.16"
/note="COGs: COG0449 Glucosamine 6-phosphate synthetase
contains amidotransferase and phosphosugar isomerase
domains;
HAMAP: Glucosamine-fructose-6-phosphate aminotransferase,
isomerising;
InterPro IPR005855: IPR000583: IPR001347;
KEGG: ddf:DEFDS_1947 glucosamine--fructose-6-phosphate
aminotransferase;
PFAM: Glutamine amidotransferase, class-II; Sugar
isomerase (SIS);
PRIAM: Glutamine--fructose-6-phosphate transaminase
(isomerizing);
SPTR: Glucosamine--fructose-6-phosphate aminotransferase;
TIGRFAM: Glucosamine-fructose-6-phosphate
aminotransferase, isomerising;
PFAM: SIS domain; Glutamine amidotransferases class-II;
TIGRFAM: glucosamine--fructose-6-phosphate
aminotransferase (isomerizing)"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase"
/protein_id="YP_004281076.1"
/db_xref="GI:325294562"
/db_xref="GeneID:10269581"
/translation="MCGIVGYVGKDNAKNVVLDGLKRLEYRGYDSAGIALIINRKLKV
YKKEGKIRNLEIELNKLNLFSSIGIGHTRWATHGKPASKNAHPHFDCFQKIAVVHNGI
IENYVELRKELQSKGHKFLSETDTEVIAHLIEEELKETPNFFEAFRKAVSRLKGSYAI
GVISSLQQDKIFVARKDSPLVIGLGEEENFIASDVPAFLPYTNKAIFLDDFELAVIKK
NSVEIFDFNGEKKEKEVHTIPWSIAQAEKAGYKHFMLKEIFEQPRSIADTISGNMSWL
KGDGKLEGVDPKSFDRIQIIACGTSYHAGLIGKFYIENLTRIQVEVDYASEYRYRNPI
VNEKTLVIAITQSGETADTLAAMKLAKEKGAKTLAICNVIGSTITREADTTIYTYAGP
EISVASTKAFTTQLTALFILALYLGKERKTLSSEKLEAYFKLLMEVPSKMEEFLNTER
KEEIVKKIALEFYKASDALYLGRYVNYPIALEGALKLKEISYIHAEGYPAGEMKHGPI
ALIDETMPVIVVATKSKVYEKVLSNVEEVKARKGRVVSIVNKGDKAVKQLSEFSIEVP
EVNEFLSPIINVVPLQLFAYYIADFLGYDVDQPRNLAKSVTVE"
misc_feature 352478..354304
/locus_tag="Dester_0361"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:234729"
misc_feature 352481..353125
/locus_tag="Dester_0361"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:238366"
misc_feature order(352481..352483,352556..352558,352694..352699,
352703..352708,352733..352735,352775..352780,
352850..352855)
/locus_tag="Dester_0361"
/note="glutaminase active site [active]"
/db_xref="CDD:238366"
misc_feature 353351..353728
/locus_tag="Dester_0361"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:240141"
misc_feature order(353369..353374,353402..353407,353414..353419,
353438..353440,353444..353446,353456..353458,
353465..353467,353531..353533)
/locus_tag="Dester_0361"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240141"
misc_feature order(353375..353380,353510..353518)
/locus_tag="Dester_0361"
/note="active site"
/db_xref="CDD:240141"
misc_feature 353834..354298
/locus_tag="Dester_0361"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:240142"
misc_feature order(353897..353899,353939..353941,353951..353953,
353957..353959,353963..353965,353969..353971,
353981..353983,353987..353995,353999..354010,
354059..354064,354074..354076,354080..354085,
354275..354280,354293..354295)
/locus_tag="Dester_0361"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:240142"
misc_feature order(353933..353935,353942..353944)
/locus_tag="Dester_0361"
/note="active site"
/db_xref="CDD:240142"
gene 354310..355164
/locus_tag="Dester_0362"
/db_xref="GeneID:10269582"
CDS 354310..355164
/locus_tag="Dester_0362"
/EC_number="3.5.1.10"
/note="COGs: COG0788 Formyltetrahydrofolate hydrolase;
InterPro IPR004810: IPR002912: IPR002376;
KEGG: aae:aq_1818 formyltetrahydrofolate deformylase;
PFAM: Formyl transferase, N-terminal; Amino acid-binding
ACT;
PRIAM: Formyltetrahydrofolate deformylase;
SPTR: Formyltetrahydrofolate deformylase;
TIGRFAM: Formyltetrahydrofolate deformylase;
PFAM: ACT domain; Formyl transferase;
TIGRFAM: formyltetrahydrofolate deformylase"
/codon_start=1
/transl_table=11
/product="formyltetrahydrofolate deformylase"
/protein_id="YP_004281077.1"
/db_xref="GI:325294563"
/db_xref="GeneID:10269582"
/translation="MRETAILLISCPDRKGILAEITGFIAKHGGNILHADQHIDFQKE
IFFMRIEWDLSNFEIPKEKLPESFQPIAEKFQMDYQIKFSSDIQNVAIFVSKYDHCLY
ELLYRFKAGELRGNLKFVISNHPDLKPVVEMYGVPFYHFPKSKKNKLEVEEKEIELLK
KEKIDLIILARYMQILSDRFVNEFRNKIINIHHSFLPAFVGAKPYHRAYERGVKIIGA
TSHYVTEELDQGPIIEQDVVRVSHRDSIEDMIRKGRDLEKLVLARAVRWHLENKILVY
DNKTVIFD"
misc_feature 354310..355161
/locus_tag="Dester_0362"
/note="formyltetrahydrofolate deformylase; Reviewed;
Region: purU; PRK06027"
/db_xref="CDD:235676"
misc_feature 354325..354546
/locus_tag="Dester_0362"
/note="N-terminal ACT domain of formyltetrahydrofolate
deformylase (F4HF-DF; formyltetrahydrofolate hydrolase);
Region: ACT_F4HF-DF; cd04875"
/db_xref="CDD:153147"
misc_feature 354571..355158
/locus_tag="Dester_0362"
/note="Formyltetrahydrofolate deformylase (Formyl-FH4
hydrolase), C-terminal hydrolase domain; Region:
FMT_core_Formyl-FH4-Hydrolase_C; cd08648"
/db_xref="CDD:187717"
misc_feature order(354589..354591,354604..354609,354814..354837,
354850..354852,354877..354888,354910..354912,
354970..354972,354976..354981,354988..354993)
/locus_tag="Dester_0362"
/note="putative active site [active]"
/db_xref="CDD:187717"
misc_feature order(354604..354609,354817..354822,354880..354882,
354886..354888,355078..355080)
/locus_tag="Dester_0362"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187717"
misc_feature order(354814..354816,354823..354825,354829..354837,
354850..354852,354877..354879,354976..354981,
354988..354993)
/locus_tag="Dester_0362"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187717"
misc_feature order(354877..354879,354883..354885,354991..354993)
/locus_tag="Dester_0362"
/note="catalytic site [active]"
/db_xref="CDD:187717"
gene complement(355172..355807)
/locus_tag="Dester_0363"
/db_xref="GeneID:10269583"
CDS complement(355172..355807)
/locus_tag="Dester_0363"
/EC_number="2.4.2.17"
/note="COGs: COG0040 ATP phosphoribosyltransferase;
HAMAP: ATP phosphoribosyltransferase;
InterPro IPR013820;
KEGG: glo:Glov_0819 ATP phosphoribosyltransferase
catalytic subunit;
PFAM: ATP phosphoribosyltransferase, catalytic domain;
PRIAM: ATP phosphoribosyltransferase;
SPTR: ATP phosphoribosyltransferase;
TIGRFAM: ATP phosphoribosyltransferase, catalytic domain;
PFAM: ATP phosphoribosyltransferase;
TIGRFAM: ATP phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase"
/protein_id="YP_004281078.1"
/db_xref="GI:325294564"
/db_xref="GeneID:10269583"
/translation="MNYNQITIALPKGRLLKDAVKFLKEAGIDASETLKETRKLIFEW
ENYRFILVKPMDVPTYVYYGTADIGIAGKDVIEEKGYDLYEPLDLGFGGCRLSVAEPE
NIEEPYDIEKLSFIKVATKYPKITDRYFRSKGIHPEIIVLYGSVELAPLVGLSDRIVD
LVQTGTTLRANGLKEVDTILYSTARLIVNKASLKTKYSIIKPIVDKIKAIL"
misc_feature complement(355175..355798)
/locus_tag="Dester_0363"
/note="ATP phosphoribosyltransferase catalytic subunit;
Reviewed; Region: hisG; PRK01686"
/db_xref="CDD:234971"
misc_feature complement(<355175..355792)
/locus_tag="Dester_0363"
/note="ATP phosphoribosyltransferase [Amino acid transport
and metabolism]; Region: HisG; COG0040"
/db_xref="CDD:223118"
gene complement(355831..357140)
/locus_tag="Dester_0364"
/pseudo
/db_xref="GeneID:10269584"
gene complement(357164..358432)
/locus_tag="Dester_0365"
/db_xref="GeneID:10269585"
CDS complement(357164..358432)
/locus_tag="Dester_0365"
/EC_number="2.5.1.7"
/note="COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl
transferase;
HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
InterPro IPR005750: IPR001986;
KEGG: gur:Gura_4059 UDP-N-acetylglucosamine
1-carboxyvinyltransferase;
PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core;
PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
TIGRFAM: UDP-N-acetylglucosamine
1-carboxyvinyltransferase;
PFAM: EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase);
TIGRFAM: UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine1-
carboxyvinyltransferase"
/protein_id="YP_004281079.1"
/db_xref="GI:325294565"
/db_xref="GeneID:10269585"
/translation="MEKFVIKGGRKLYGKIRISGSKNASLPILFSSILTGRLKLSNVP
DLKDVTTTCYLLQKMGFEIEKNKDVVEIESGKVIKTEAPYELVKTMRASILCLGPLLA
KYGKAKVSMPGGCAIGLRPVNLHLKALSKMGADIRIDHGYITAEVKGRLKGCEITFDF
PTVGGTENVLMAAVLADGKTIIRNAAKEPEIVDLAKALKKAGAIIEGEGTDVIEITGI
SELEEIDYRVMPDRIEAGTFVAAVGLAGGEIELEEFPFEVLKAVIEKFEEAGLKIEKL
DKNRAKVKKVGKLKGTDIITQPYPGFPTDMQAQFMATMCLAEGVSVIKETIFENRFMH
VLELQRLGADISIDGNTVVIKGVDKLIGAKVTATDLRASASLVIAGLAAENTTEVYRI
YHLDRGYERMEEKLQALGANIKREKSELPY"
misc_feature complement(357188..358432)
/locus_tag="Dester_0365"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature complement(357206..358399)
/locus_tag="Dester_0365"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:238796"
misc_feature complement(order(357740..357751,358370..358381))
/locus_tag="Dester_0365"
/note="hinge; other site"
/db_xref="CDD:238796"
misc_feature complement(order(357518..357520,357941..357946,
357953..357955,358058..358075,358148..358150,
358160..358162,358364..358366))
/locus_tag="Dester_0365"
/note="active site"
/db_xref="CDD:238796"
gene complement(358434..359300)
/locus_tag="Dester_0366"
/db_xref="GeneID:10269586"
CDS complement(358434..359300)
/locus_tag="Dester_0366"
/note="COGs: COG2890 methylase of polypeptide chain
release factors;
InterPro IPR004556: IPR019874: IPR007848;
KEGG: aar:Acear_2234 protein-(glutamine-N5)
methyltransferase, release factor-specific;
PFAM: methyltransferase small;
SPTR: Protein-(Glutamine-N5) methyltransferase, release
factor-specific;
TIGRFAM: Protein-(glutamine-N5) methyltransferase, release
factor-specific; Modification methylase HemK;
PFAM: methyltransferase small domain;
TIGRFAM: HemK family methylases; protein-(glutamine-N5)
methyltransferase, release factor-specific"
/codon_start=1
/transl_table=11
/product="protein-(glutamine-N5) methyltransferase"
/protein_id="YP_004281080.1"
/db_xref="GI:325294566"
/db_xref="GeneID:10269586"
/translation="MCIIPDMKWTVGKLIKRATEILRERGIKSARLDAELLLAHSLGF
KDRIKLYTEFERPLTEEEVENYRQLIKRRAKGEPVAYLTGEKEFFGFTFKVQKGVLIP
RPETELLVEVVYDYLKDKEDKTIVDVGTGSGCIILTLYKLLGDKHRYIGTDISSIALK
VANENKELLGCNNVEIVKMDLLKEINYPVDVIVSNPPYIPFGDKKLDKEVLKYEPAVA
LFGGKSGLEIVERLIGESAKKLSSNGFFAIEIGKGQSKGVKKLLEKAGFRNIKLHKDL
AGVERVISAERG"
misc_feature complement(358440..359276)
/locus_tag="Dester_0366"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:236467"
misc_feature complement(<358692..358931)
/locus_tag="Dester_0366"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(358716..358718,358758..358766,
358839..358844,358899..358919))
/locus_tag="Dester_0366"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 359382..361172
/locus_tag="Dester_0367"
/db_xref="GeneID:10269587"
CDS 359382..361172
/locus_tag="Dester_0367"
/EC_number="1.2.7.8"
/note="COGs: COG4231 Indolepyruvate ferredoxin
oxidoreductase alpha and beta subunits;
InterPro IPR002880: IPR011766;
KEGG: wsu:WS0714 indolepyruvate oxidoreductase subunit
IorA.-.-iorindolepyruvate ferredoxin oxidoreductase alpha
subunit;
PFAM: Thiamine pyrophosphate enzyme, C-terminal
TPP-binding; Pyruvate flavodoxin/ferredoxin
oxidoreductase, N-terminal;
PRIAM: Indolepyruvate ferredoxin oxidoreductase;
SPTR: indolepyruvate oxidoreductase subunit IORA
.-.-IORINDOLEPYRUVATE FERREDOXIN OXIDOREDUCTASE ALPHA
SUBUNIT;
PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain;
TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha
subunit"
/codon_start=1
/transl_table=11
/product="Indolepyruvate ferredoxin oxidoreductase"
/protein_id="YP_004281081.1"
/db_xref="GI:325294567"
/db_xref="GeneID:10269587"
/translation="MKKTLLGNEAIAWGLLYAGVDVMAAYPGTPSSEILETYQKIVKQ
KNLSAYAEWSTNEKVAFETAYAAAITGKRAACGMKMVGLNVASDALMSSAYIGNKGGF
LIISADDPGFYSSQTEQDSRYFAKFARIPALDPSSPEDAFRLTVIGVNLSEKFEIPVI
LRPVLRVCHGRQIVDIPDFEFEGREGKFERNIERWAAVPRIPRLKQGYELLEKLQRIA
QFNYDEFLKPQVEKLRGGKLLIIASGTSYSYVLEVLEDTGLKADVLKIDMPTPLPSGR
LSDLISSYEEVIVFEETYPLIEEQIKHLGNVRGKLSGDVFQIDEVAHDRVADILLKRG
HISRNVYVGKEYEGEVPPRVPALCPGCPHRTVFYGMKKVFGNKAIYPSDIGCYTLGLN
QKAVDTVLCMGASVGLSCGFSKSDTKKPIVATIGDSTFLHAGIPPLIDAVANRHKFVL
VIMDNSTVAMTGLQPTPERIGNVSIPKIVEGCGVKPLILDYDGTIKTTVEFFKKVKEI
YEKANGPVVAIVNEFCTFDKEKVKLPGKFAKVDQDKCTGCGHCINDFGCPAFEWNDEG
KVEVNPYFCVGCGVCLSDLCPFDAFVEDVR"
misc_feature 359382..361154
/locus_tag="Dester_0367"
/note="indolepyruvate ferredoxin oxidoreductase, alpha
subunit; Region: IOR_alpha; TIGR03336"
/db_xref="CDD:234170"
misc_feature 359400..359867
/locus_tag="Dester_0367"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature order(359445..359450,359466..359468,359478..359480,
359487..359489,359532..359543,359565..359570,
359574..359582,359589..359591,359595..359597,
359646..359648,359655..359657,359667..359669,
359712..359717,359748..359753)
/locus_tag="Dester_0367"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(359445..359450,359457..359462,359466..359468,
359484..359489,359532..359543,359565..359570,
359574..359582,359589..359591,359595..359597,
359646..359648,359655..359657)
/locus_tag="Dester_0367"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(359460..359462,359550..359552)
/locus_tag="Dester_0367"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature order(359466..359468,359706..359708)
/locus_tag="Dester_0367"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
misc_feature 360435..360953
/locus_tag="Dester_0367"
/note="Thiamine pyrophosphate (TPP) family, IOR-alpha
subfamily, TPP-binding module; composed of proteins
similar to indolepyruvate ferredoxin oxidoreductase (IOR)
alpha subunit. IOR catalyzes the oxidative decarboxylation
of arylpyruvates, such as...; Region: TPP_IOR_alpha;
cd02008"
/db_xref="CDD:238966"
misc_feature order(360585..360587,360657..360668,360744..360746,
360750..360752)
/locus_tag="Dester_0367"
/note="TPP-binding site; other site"
/db_xref="CDD:238966"
gene 361169..361699
/locus_tag="Dester_0368"
/db_xref="GeneID:10269588"
CDS 361169..361699
/locus_tag="Dester_0368"
/note="COGs: COG1014 Pyruvate:ferredoxin oxidoreductase
and related 2-oxoacid:ferredoxin oxidoreductase gamma
subunit;
InterPro IPR019752;
KEGG: nam:NAMH_0991 indolepyruvate oxidoreductase subunit
IorB;
PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic
domain;
SPTR: Indolepyruvate oxidoreductase subunit IorB;
PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase;
TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta
subunit"
/codon_start=1
/transl_table=11
/product="pyruvate/ketoisovalerate oxidoreductase"
/protein_id="YP_004281082.1"
/db_xref="GI:325294568"
/db_xref="GeneID:10269588"
/translation="MRYQIVLTGVGGQGTIFLVKLLAQCALNKGIDFIGTETHGMAQK
GGTVISYLKIGDFKAPLVGEGQADLLLGLYPTETLRFLHYLKPEGYIVTNIEDDFPEV
NGFNVFTVKASELAVKGEVNPKSLNVFILGYALKVIENFPFSKEEVEKAIVELNPKFA
DVNIEALNKGFLTGCN"
misc_feature 361169..361681
/locus_tag="Dester_0368"
/note="indolepyruvate oxidoreductase subunit beta;
Reviewed; Region: PRK06853"
/db_xref="CDD:180732"
misc_feature 361169..361681
/locus_tag="Dester_0368"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
gamma; Validated; Region: PRK08537"
/db_xref="CDD:181462"
gene 361746..361916
/locus_tag="Dester_0369"
/db_xref="GeneID:10269589"
CDS 361746..361916
/locus_tag="Dester_0369"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281083.1"
/db_xref="GI:325294569"
/db_xref="GeneID:10269589"
/translation="MGWRVVYLDGKEGRPFVECDTCREIGRNVIEPAAMFVKTSKYSI
FEEKKKEAEEGV"
gene 361920..362900
/locus_tag="Dester_0370"
/db_xref="GeneID:10269590"
CDS 361920..362900
/locus_tag="Dester_0370"
/note="InterPro IPR002559;
KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein;
PFAM: transposase, IS4-like;
SPTR: transposase IS4 family protein;
PFAM: transposase DDE domain"
/codon_start=1
/transl_table=11
/product="transposase IS4 family protein"
/protein_id="YP_004281084.1"
/db_xref="GI:325294570"
/db_xref="GeneID:10269590"
/translation="MPKLRKKPILSGMKAKRLNFHKVLNLSKTYMNRRGQAVLVYLYP
FKTKRGRPKKYPDEIILTLLFLQVAWNLSFRDLEYLAVQIFGRENIPDFSTYYYRLKQ
LPSILLVDFLNFVSRRLLGKYHKELRFLIIDGTGFKYNEIYPLKILRGKEIKEVKSHV
KVVVLSVHLKDGKRFILTALPGESYASEVKLGEKIVRWLNERGFIWRALKGKPFLGDK
AYDSIKFIELVLLVGLKPYIKVRETLRKGIKSEIRLKCKELLESDEIYRFRGLIESIF
GEVKQDVGSYEKTKSFHIAQLFVLAKFILFNMGVLFFVWMIFQTLSFKRY"
misc_feature <362061..362336
/locus_tag="Dester_0370"
/note="Transposase DDE domain; Region: DDE_Tnp_1_5;
pfam13737"
/db_xref="CDD:222354"
misc_feature <362544..362843
/locus_tag="Dester_0370"
/note="Transposase DDE domain; Region: DDE_Tnp_1;
pfam01609"
/db_xref="CDD:216602"
gene 362912..364168
/locus_tag="Dester_0371"
/db_xref="GeneID:10269591"
CDS 362912..364168
/locus_tag="Dester_0371"
/note="COGs: COG1236 exonuclease of the beta-lactamase
fold involved in RNA processing;
InterPro IPR011108;
KEGG: ttm:Tthe_2433 RNA-metabolising
metallo-beta-lactamase;
PFAM: RNA-metabolising metallo-beta-lactamase;
SPTR: RNA-metabolising metallo-beta-lactamase;
PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising
metallo-beta-lactamase; Beta-Casp domain"
/codon_start=1
/transl_table=11
/product="RNA-metabolising metallo-beta-lactamase"
/protein_id="YP_004281085.1"
/db_xref="GI:325294571"
/db_xref="GeneID:10269591"
/translation="MENFLIPIGGGNEIGASSYLYVLGGVKILIDSGIRFNAKEPYPD
FELLKVLAPELDAIFVTHAHIDHCGSIHILSSLYPDTPIYTTHETAQLLSLMVEDAIK
VKYIKEKSEDEWKEYKLLDETFMRLERREFFDTLNIKDIEVKFLPAGHILGAAAFQIN
YDDSSSIYHTGDISLQPQKTVEAAHLPSSSVNLLVTESTYYYSNRSFEKEKAVEEFYQ
TIVKVFERKGRILIPVFALGRAQEIILLLTEGMKAGKIPPMTVYVDGLAREVSNIYEN
LLNKEFFNYYVQPAPTYEGIDFLEACEENLREANCIISTSGMLMENTPSYIYASLLSR
NERNAIIFSGYLVEESFGYRLLNDREILKNFKCEIKRHHFSAHSDKKELQDLINILSP
RKTVFIHGYPGKEIKYHGFNREVIKF"
misc_feature 362924..364117
/locus_tag="Dester_0371"
/note="Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis]; Region: YSH1; COG1236"
/db_xref="CDD:224157"
misc_feature 362960..>363442
/locus_tag="Dester_0371"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:214854"
misc_feature 363629..363976
/locus_tag="Dester_0371"
/note="Beta-Casp domain; Region: Beta-Casp; pfam10996"
/db_xref="CDD:220932"
misc_feature 364007..364111
/locus_tag="Dester_0371"
/note="RNA-metabolising metallo-beta-lactamase; Region:
RMMBL; pfam07521"
/db_xref="CDD:203663"
gene 364165..365661
/locus_tag="Dester_0372"
/db_xref="GeneID:10269592"
CDS 364165..365661
/locus_tag="Dester_0372"
/note="KEGG: tva:TVAG_252710 hypothetical protein;
SPTR: uncharacterized protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004281086.1"
/db_xref="GI:325294572"
/db_xref="GeneID:10269592"
/translation="MRIYFGYPDSFFKDKNFRLKDLFLREIGVKYETVPVEVRRKLLS
LLDNLEQKSYLYLNGIVYDAIDILEFAFFSLSIEDLQEIVLPGYLYGKSTFLIRNLFD
NLLERRVSVYYDFNFFSQKTLVVNIGYKKTSLSIGGKLITILPVGEYHFVDILGNYLF
NRFILEVGISNRDLRKKGERGKLLDKFRSFAGQVLFKNRKEIFLENFRYKRSIEKEEV
RLAISPYTGLCNYGDFIEKPVDISSSVVLSLYSYEELFRERAPIEKIILIGRLTFPFE
DVLGKIFPIPIEKLDGKEMIGLSAVNPIFKVSLRKIDFPLDGRFPNLKIPSLDSSDEI
NVSLLRKYYNKQDLKGIFLIEKLTEKQLSDKEKEQFIFELLSILKRSSYRTKESILYL
NYAISALSKLDIPENLFQKVLEEMIEKAFNWFLPIETKMNILYFCYKFSDKLKDERFK
IFLPLLLTYIRDKKLTEGERNFIRTAVETTFSKIKISLRGQDEISRIS"
gene 365639..369187
/locus_tag="Dester_0373"
/db_xref="GeneID:10269593"
CDS 365639..369187
/locus_tag="Dester_0373"
/EC_number="5.99.1.3"
/note="COGs: COG1110 Reverse gyrase;
HAMAP: Reverse gyrase;
InterPro IPR005736: IPR006171: IPR013497: IPR014001: IPR
006154: IPR003601: IPR003602;
KEGG: aae:aq_1159 reverse gyrase;
PFAM: DNA topoisomerase, type IA, central; Toprim domain;
PRIAM: DNA topoisomerase (ATP-hydrolyzing);
SMART: DNA topoisomerase, type IA, DNA-binding; DNA
topoisomerase, type IA, domain 2; Toprim domain, subgroup;
DEAD-like helicase, N-terminal;
SPTR: Reverse gyrase 2;
TIGRFAM: Reverse gyrase;
PFAM: Toprim domain; DEAD/DEAH box helicase; DNA
topoisomerase;
TIGRFAM: reverse gyrase"
/codon_start=1
/transl_table=11
/product="reverse gyrase"
/protein_id="YP_004281087.1"
/db_xref="GI:325294573"
/db_xref="GeneID:10269593"
/translation="MKLAEFHRMCPNCGGIISDERLKAGLPCEKCLPKELFYTNRKEI
CNALGNKLQDFKKICLLDEFTENYVKFFKEKTGFTPWTLQVMWARRVALSKSFTMIAP
TGVGKTTWGLVTSAYLSGKVYILVPTKLLVLQTVEKLSKLTNKKIVAYTGKKSEKGTI
QSGNFEILVTTTNFLYRNFEIIPKPFDFVFVDDVDSLLKSAKNVDKVIRLLGFTEEDI
SIAEKVLELKSLVAKFGEKVDRKLIEKLKKLENFLEKRKSEIKNVLVVSSATSQPKSK
RVKLFRELLGFEVGKSATALRNVEDVLIYTDKDYLEETVKIIKKYGKGVFVFISEDLG
KDYVEEVVNFLNKKGISTVSYENFSSENQGNFIDGKIQAVVGIASYRNPLARGIDLPQ
AVRYAVFLGVPKLEFNLKLSLAPVKLFGILLVLRELIEDKTKVMSYLSYLKKYLSLKK
ELLDKYPKVKEKLEEIKGFLESYLSNKEFLEKVRASEDISLKEKNGELFVVVGDATGY
VQASGRTSRMFAGGLTKGVSLMLVDDLKALNSLKKRLSIFLEDLNFKVLDYDKGKELA
EKFGFELIDEEKLNKIFKTVDEDRKRVKEILEGKIKAETKNLVNTALIVVESPNKART
IANFFGKPVRRKVLDIDVYEINIGDRLLLLTASKGHVFDLTVRDGLWGVKEEESSYIP
VYDTIKYCTKCFEQTTEPFCSKCSGKPDVDKITVVRALREVGLEIDEVYIASDPDTEG
EKIGWDIGTVIKPFQKKVRRMEFHEVTKWAFMEALKTPKEIDENLVKAQIVRRIADRW
VGFALSQHLWKVFKKHWLSAGRVQTPVLGWVIKRYEESKEKKGIIVVETKAGSFRFEF
DNLEEFQKIAIDKVEIKVKEKSIFEKNSLPPFNTGELLKEASNNLGISAEETMNIAQA
LFESGFITYHRTDSTRVSTAGMGVAKEYISQKFGAEFIKLRSWGDGGAHECIRPTRPL
DAESLKALVLVSGSSSKMTKNHFRIYDLIFKRFMASQMIPTKVEKCKLLVKLLPVEKE
EEEERIAKIVKNGWNLIQPLNLEPLSVELKKEKTYYFEIISYVKKKVPKVFPYTQGEL
IEEMRKKEIGRPSTYAKIVQTLLDRKYIIEKGKFLYPTKLGIEVYNYLSEKFPDYTSE
EFTRELENIMDKVERGEEDYQKVIENLKPILEIRYS"
misc_feature 365639..369178
