LOCUS NC_015223 92707 bp DNA circular CON 10-JUN-2013
DEFINITION Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence.
ACCESSION NC_015223
VERSION NC_015223.1 GI:325983714
DBLINK Project: 55727
BioProject: PRJNA55727
KEYWORDS .
SOURCE Nitrosomonas sp. AL212
ORGANISM Nitrosomonas sp. AL212
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
Nitrosomonadaceae; Nitrosomonas.
REFERENCE 1 (bases 1 to 92707)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R.,
Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N.,
Pagani,I., Norton,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of plasmid1 of Nitrosomonas sp. AL212
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 92707)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 92707)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R.,
Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N.,
Pagani,I., Norton,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002553.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4086173
Source DNA and organism available from Jeanette Norton
(jeanette.norton@usu.edu)
Contacts: Jeanette Norton (jeanette.norton@usu.edu)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Nitrosomonas sp. AL212
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Soil
num_replicons :: 3
ref_biomaterial :: Missing
biotic_relationship :: Free living
trophic_level :: Lithotroph, Oligotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi03896
Greengenes ID :: 6539
Funding Program :: DOE-CSP 2006
Isolation Site :: laboratory waste water treatment reactor
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..92707
/organism="Nitrosomonas sp. AL212"
/mol_type="genomic DNA"
/strain="AL212"
/isolation_source="laboratory waste water treatment
reactor"
/db_xref="taxon:153948"
/plasmid="pNAL21201"
gene complement(82..1317)
/locus_tag="NAL212_0001"
/db_xref="GeneID:10299836"
CDS complement(82..1317)
/locus_tag="NAL212_0001"
/inference="protein motif:TFAM:TIGR01730"
/note="TIGRFAM: Secretion protein HlyD;
KEGG: gfo:GFO_1187 HlyD family secretion protein"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_004296116.1"
/db_xref="GI:325983715"
/db_xref="GO:0008565"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:10299836"
/translation="MKMHTQFISVLILAIFSASCMNKSANNKDIEGDRNHASLKNSNE
NHINHSDSEKEIGEVHLSELKFNSLGIKVGNIPTRALSGVVNVNGWLELFPQHKAVIT
SVLGANITEIKVIEGEKVKKDQILAYISHPNLINLQTAYISTYNQQQFLEKEYHRQQR
LYDEKIGSGKIYQQTKANYQTIKSEVEGYEAQLKQLGLNVKKLKNGNISQYVPVVSPI
DGYIEKILVQTGQFVDPQAQILSIINNDFIHADLMVFEKDVHKVKKGQKVSFTVESVP
DKNLSATIFSVEKNFERNPRVVRVHAEIDQKEYSLIPGMYIHGEIYTDNSSVTALPEE
AIVVENGKPYIFLVEKTKKNEEIEWIFNPIEIRTGISNQGWVEIKLLEPLTENTKVAL
NSAYYLISEINKGETSHEH"
sig_peptide complement(1249..1317)
/locus_tag="NAL212_0001"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.714) with cleavage site probability 0.650 at
residue 23"
misc_feature complement(124..948)
/locus_tag="NAL212_0001"
/note="Membrane Fusion Protein cluster 2 (function with
RND porters); Region: 8a0102; TIGR00999"
/db_xref="CDD:233229"
misc_feature complement(376..678)
/locus_tag="NAL212_0001"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene complement(1343..5770)
/locus_tag="NAL212_0002"
/db_xref="GeneID:10299744"
CDS complement(1343..5770)
/locus_tag="NAL212_0002"
/inference="protein motif:TFAM:TIGR00914"
/note="KEGG: gfo:GFO_1186 AcrB/AcrD/AcrF family heavy
metal cation efflux protein;
TIGRFAM: Heavy metal efflux pump CzcA;
PFAM: Acriflavin resistance protein; Outer membrane efflux
protein"
/codon_start=1
/transl_table=11
/product="CzcA family heavy metal efflux pump"
/protein_id="YP_004296117.1"
/db_xref="GI:325983716"
/db_xref="GO:0008324"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR003423"
/db_xref="InterPro:IPR004763"
/db_xref="GeneID:10299744"
/translation="MINRIINYSINNKLIVGLLTLVLIGAGVYSLFTVDLGTVPDITN
NQVQVITVSQTLATEDIERFVTFPVELAMANLPGVTEIRSISRFGLSVVTIVFEDSMG
TYLPRQLVQEKLNIVQQQIPETFGSPSLGPITTGLGEIYQYTLQPKPGFETRYSPTDL
RTFQDWIIRRQLALVEGVVAVNAFGGKIKQYEIAINPEKLNANNVSLSEVFEALRRNN
SNTGGAYIEKNNMANFIRGEGLVRSLDDIRNIFIKNVNGLPILIKDVAEKVHFGHQIR
YGAFTQDGREAVGGMILMLRGSNSNAVIQNVQKRIVDIQKSLPEGLEIKPFLDRSTLI
ERTTSTVTENLTEGALVVIFALVIILGSIRGGFIAASTILLSFLFASILMNQFDVSAN
LISLGAIDFGIIVDGAVIIVERTIYEIQKQYKAGKLNFDQKDIDELAFQAGSSMMNTA
VFGQIIILIVFIPILFLTGIEGKMFHPMAYTFGFTMLGAIILCLTYVPMMSALLLRPG
KNQKNWSGKLEKSLENLGNKIVNGFQHIYLPLLISALRHQVIVMIVAFALFVGAVFMF
LRIGGEFLPQLDEGDIAMQALIRPGSGLSETIDVSIKIENILLQNFPEIKIALARIGV
AEIPTDPMPMDIADMFIILEKDVNKWTSAKSKDELIEKIKEKLDSELIGINLVFSQPI
ELRFNELLTGVREDVAVKLYGDDLNVLAQKANDIAKIIQTVPGVGDVNTERTSGMPQM
TVRYSREKIAQYGLNIDKLNDYISSAFAGSVAGVILEGEKRFDMVIRFDEAYQKNIAD
LRNLYIDLPNGNQIPIKELADINYVLGPMQISRDNTFRRTYVGVNTRGRDMESVVKDI
QQRLEAELDLPPGYYVTYGGEFENLQKAKNRLAIVVPITIFLIFVLLYFALKSFSQAV
ILFTAIPLAAIGGVLALWLRDIPFSVSAGVGFVVLFGIAVLDDLILISRFNSLKEEGI
TDIEERIVKATKERIRPILLTDATDILGFLPMALSVSAGSEVQHPLSTVVIGGLISGT
LLTLIVLPVIYAFVENRNNKKINKQSLQLPRANTLVIIFVCSGLLSILLGAASTAKAQ
SPPLENLPTVTLEQAKDLAIKNFPRIQAARLEIENQEVQKKTAWDLGSTSIFTGAEKL
GYTPETTYMHVGIKQSQINIFGIFPKLELQKERVALAEKALNLSVIEVEMEVSRAWVM
VYTAKNNYQVYKQMNSIFMDIERAAKIKFEVEAISKLEYLATSNQGNQVLIQKEQAYR
DYLSALQRLNLWFAIDTLFTVPDIPAKQLESPLNLIPDSIDTHPVLNVSKQRVNVAEA
AIKERRSQFLPKLSLQYGKQEISGLPGLHQFQVGIEVPLFFAPELGRSQAAKIEHTIA
NQNLQQSQLELAAAYQNIREQYLKWLNSWQYYRDVALPMAKEQQTGALTAYREGEIDY
VTFLQNMRDSIRIEIDSWNAFGSYLDSRYQMEYFLKTSN"
misc_feature complement(2630..5770)
/locus_tag="NAL212_0002"
/note="Putative silver efflux pump [Inorganic ion
transport and metabolism]; Region: COG3696"
/db_xref="CDD:226220"
misc_feature complement(<2906..3109)
/locus_tag="NAL212_0002"
/note="Glycosyltransferase 4 (GT4) includes both
eukaryotic and prokaryotic
UDP-D-N-acetylhexosamine:polyprenol phosphate
D-N-acetylhexosamine-1-phosphate transferases. They
catalyze the transfer of a D-N-acetylhexosamine
1-phosphate to a membrane-bound...; Region: GT_MraY-like;
cl10571"
/db_xref="CDD:245335"
misc_feature complement(2966..2971)
/locus_tag="NAL212_0002"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133460"
misc_feature complement(1373..2476)
/locus_tag="NAL212_0002"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:233594"
gene complement(5953..6318)
/locus_tag="NAL212_0003"
/db_xref="GeneID:10299745"
CDS complement(5953..6318)
/locus_tag="NAL212_0003"
/inference="similar to AA sequence:KEGG:Nmul_A2105"
/note="KEGG: nmu:Nmul_A2105 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296118.1"
/db_xref="GI:325983717"
/db_xref="GeneID:10299745"
/translation="MYKFPNIAVFVLSVSLLTNAFAWAFHGEIFIHELDHQATYIPVQ
TMEENHQHVEFSDDKDLNLSTHICLNAVYQPIFFTDLPVLDFIAAKEILANFIPLYIP
ESFLDSPLRPPRVLLTTKV"
sig_peptide complement(6250..6318)
/locus_tag="NAL212_0003"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.729 at
residue 23"
gene complement(6673..7683)
/locus_tag="NAL212_0004"
/db_xref="GeneID:10299746"
CDS complement(6673..7683)
/locus_tag="NAL212_0004"
/inference="protein motif:PFAM:PF01758"
/note="PFAM: Bile acid:sodium symporter;
KEGG: bbe:BBR47_37520 hypothetical protein"
/codon_start=1
/transl_table=11
/product="bile acid:sodium symporter"
/protein_id="YP_004296119.1"
/db_xref="GI:325983718"
/db_xref="GO:0008508"
/db_xref="InterPro:IPR002657"
/db_xref="GeneID:10299746"
/translation="MRREQLEENQIGLYAVALTAGMGLGLWHPSFGASLEYLISPVLA
LLLYSMFAQIPFLQLREAFANKRFTAALLMINFIIVPIVVWFLSLFLPEHPPLLLGVY
LVLLTPCIDYVVVFTHLGRGNARLVLASTPLLLLAQMLLLPVYLWLFMGEQAAQVMSA
EPFLEAFLVLIVFPLGLALSTEFWAKRQRSGAIWLEVTAWFPVPFMAMTLLLVVASQI
GRIEEYLPVVAQVVPVYIAFMAIMPFLARLTAYAFHLDTQAGRALVFSAGTRNSLVVL
PLALALPDGWILASVVIVTQTLVELVGELIYIRLVPAIIFQESKSLEISKTVSKKSSQ
DK"
misc_feature complement(6742..7668)
/locus_tag="NAL212_0004"
/note="Arsenite efflux pump ACR3 and related permeases
[Inorganic ion transport and metabolism]; Region: ACR3;
COG0798"
/db_xref="CDD:223869"
misc_feature complement(6871..7641)
/locus_tag="NAL212_0004"
/note="Sodium Bile acid symporter family; Region: SBF;
cl17470"
/db_xref="CDD:248024"
gene 7881..8801
/locus_tag="NAL212_0005"
/db_xref="GeneID:10299747"
CDS 7881..8801
/locus_tag="NAL212_0005"
/inference="protein motif:TFAM:TIGR01297"
/note="KEGG: tcx:Tcr_1014 cation diffusion facilitator
family transporter;
TIGRFAM: Cation efflux protein;
PFAM: Cation efflux protein"
/codon_start=1
/transl_table=11
/product="cation diffusion facilitator family transporter"
/protein_id="YP_004296120.1"
/db_xref="GI:325983719"
/db_xref="GO:0008324"
/db_xref="InterPro:IPR002524"
/db_xref="GeneID:10299747"
/translation="MAHNHSHDHDHSHVPKNFDHAFAIGIALNVGFVVVEVIFGLLSN
SLALLADAGHNLSDVLSLLFAWGASVLVRKLPTQRHTYGLRRSSILAALINALVLLVA
VGAIAWEAILRFSHPEAVASDTVIWVASVGIVINGFTAWLFMSGQKQDMNIRGAYLHM
MADAAVSLGVVLAAIAIKFTDWLWLDPFMSLVVAVIIGIGTWGLLRESLSLALDAVPA
NIHPAKVEAYLASLPGIEAVHDLHIWAMSTTEIALTVHLIKPDAVIDDLLLVQINNEL
RELFGIQHTTVQFERGDTSHSCKQAPAEVV"
misc_feature 7941..8756
/locus_tag="NAL212_0005"
/note="Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism]; Region: CzcD; COG1230"
/db_xref="CDD:224151"
misc_feature 7941..8750
/locus_tag="NAL212_0005"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:223131"
gene 8902..9129
/locus_tag="NAL212_0006"
/db_xref="GeneID:10299748"
CDS 8902..9129
/locus_tag="NAL212_0006"
/inference="similar to AA sequence:KEGG:SVI_3236"
/note="manually curated;
KEGG: svo:SVI_3236 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296121.1"
/db_xref="GI:325983720"
/db_xref="GeneID:10299748"
/translation="MNTIQLQSTITCPNCGTQKLETMPTNACQFFYECESCHHLLKPK
AGDCCVYCSYGDVPCPPIQLSGSNSSCCTDS"
gene 9682..10482
/locus_tag="NAL212_0007"
/db_xref="GeneID:10299749"
CDS 9682..10482
/locus_tag="NAL212_0007"
/inference="similar to AA sequence:KEGG:Bpro_2506"
/note="KEGG: pol:Bpro_2506 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296122.1"
/db_xref="GI:325983721"
/db_xref="InterPro:IPR007038"
/db_xref="GeneID:10299749"
/translation="MSTLDMRFLTTYKFLIILFLLIPISALAHGISDEDKLRMLSGGY
LQYIGLGATHMLTGYDHLLFLFGVVFFLTSFKDIAKFVTAFTVGHCITLIFATFYQIT
WNYFLIDAIIALSVIYKGFDNNGGFQKYLDMKSPNLLGAIFLFGLLHGFGLSTRLQQL
PLGDDSTGILLRILSFNLGVEIGQIVALVVMVSVLSLWRHKPSFKRFSFASNQSLIYA
GVILLFMQLHGYQHDSDPDSFRFPIQEHKHAHEDLEVEQSIDTGRESL"
sig_peptide 9682..9768
/locus_tag="NAL212_0007"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.988) with cleavage site probability 0.915 at
residue 29"
misc_feature 9820..10287
/locus_tag="NAL212_0007"
/note="HupE / UreJ protein; Region: HupE_UreJ_2;
pfam13795"
/db_xref="CDD:222384"
gene 10509..10859
/locus_tag="NAL212_0008"
/db_xref="GeneID:10299750"
CDS 10509..10859
/locus_tag="NAL212_0008"
/inference="similar to AA sequence:KEGG:Bpro_2507"
/note="KEGG: pol:Bpro_2507 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296123.1"
/db_xref="GI:325983722"
/db_xref="GeneID:10299750"
/translation="MKKILMITILVTAIFGVGGAMAGEDSSCHFHGNKVATEETVIKC
ASDRKEILIKQGKIDPSWKTIEQDKIEMVDGKKGKEWLVTFTNPAVDDKTKEKLYLFF
TSTGNFIAANFTGN"
sig_peptide 10509..10577
/locus_tag="NAL212_0008"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 1.000 at
residue 23"
gene complement(10927..11277)
/locus_tag="NAL212_0009"
/db_xref="GeneID:10299751"
CDS complement(10927..11277)
/locus_tag="NAL212_0009"
/inference="similar to AA sequence:KEGG:Slit_2112"
/note="KEGG: slt:Slit_2112 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296124.1"
/db_xref="GI:325983723"
/db_xref="GeneID:10299751"
/translation="MLYYALKVIISAIVIVAIAEIAKRNTGLAALVASLPLTSLLAFI
WLHIEGAAVSQIADLSKQIFWFVLPSLLFFILFPILLKHGLGFWFSLSLSAVATIGCY
FSFMFFLPRIGIQL"
misc_feature complement(10948..11274)
/locus_tag="NAL212_0009"
/note="hypothetical protein; Provisional; Region:
PRK09272"
/db_xref="CDD:181745"
gene 11379..11639
/locus_tag="NAL212_0010"
/pseudo
/db_xref="GeneID:10299752"
gene 11675..12451
/locus_tag="NAL212_0011"
/db_xref="GeneID:10299829"
CDS 11675..12451
/locus_tag="NAL212_0011"
/inference="protein motif:PFAM:PF00484"
/note="KEGG: bja:bll4865 putative carbonic anhydrase;
PFAM: Carbonic anhydrase;
SMART: Carbonic anhydrase"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="YP_004296125.1"
/db_xref="GI:325983724"
/db_xref="GO:0004089"
/db_xref="GO:0008270"
/db_xref="InterPro:IPR001765"
/db_xref="GeneID:10299829"
/translation="MCQICDKKNEYLQHDSRKRSFLKLAAASALGLGIISSAGIASEE
ERKVPLPSSTKIPPQPENVLTPDQALERLMAGSKRHASGQSTVSLDIHTSQDALVKGQ
NPYAAILGCADSRVGPEQCFDEAHGDLFVARVAGNYITVDFLATLEYAVAVLHTPLIM
VLGHESCGAVGAAIDAIDKNKQFPGHIQTMATALLPAVRAARSMPGMLYENAVKMNVI
LTVTELKNSTPILSQSVKERKIRIVGGIYRLSTGMVELVA"
sig_peptide 11675..11800
/locus_tag="NAL212_0011"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.663) with cleavage site probability 0.592 at
residue 42"
misc_feature 11870..12445
/locus_tag="NAL212_0011"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeC; cd03378"
/db_xref="CDD:239473"
misc_feature order(11978..11980,11984..11986,12005..12007,12011..12019,
12053..12055,12062..12064,12119..12121,12134..12136,
12164..12166,12173..12175,12413..12415)
/locus_tag="NAL212_0011"
/note="active site clefts [active]"
/db_xref="CDD:239473"
misc_feature order(12005..12007,12011..12013,12164..12166,12173..12175)
/locus_tag="NAL212_0011"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:239473"
misc_feature order(12008..12019,12023..12025,12029..12040,12053..12061,
12065..12067,12071..12073,12104..12109,12116..12121,
12413..12415,12419..12424,12428..12430,12434..12436)
/locus_tag="NAL212_0011"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:239473"
gene complement(12463..14459)
/locus_tag="NAL212_0012"
/pseudo
/db_xref="GeneID:10299753"
gene 12831..13508
/locus_tag="NAL212_0013"
/db_xref="GeneID:10299830"
CDS 12831..13508
/locus_tag="NAL212_0013"
/inference="similar to AA sequence:KEGG:Rmar_2140"
/note="KEGG: rmr:Rmar_2140 transposase-like protein"
/codon_start=1
/transl_table=11
/product="transposase-like protein"
/protein_id="YP_004296126.1"
/db_xref="GI:325983725"
/db_xref="GeneID:10299830"
/translation="MNVKNRYYIRSRIREAKFRQLIRYFSLDFTATSTAQLSGISIRS
VNSIYLKIRQRIAQCCELESPLQGSVEVDESYFGAQRVRGKRGRGAYGKTIVFGVLKR
QGKVYTEIVPDCSKATLQAIIRGHVAPDTVIHSDGWRGYDGLVDIGFDKHFRVHHGDN
EFASGERHINGIESFWSFAKRRLAKFNGVPEHTFYLHLKETEFRFNHRRDNLYYAILK
LLRSNPL"
misc_feature 13023..13448
/locus_tag="NAL212_0013"
/note="ISXO2-like transposase domain; Region:
DDE_Tnp_IS1595; pfam12762"
/db_xref="CDD:221758"
gene complement(14755..17979)
/locus_tag="NAL212_0014"
/db_xref="GeneID:10299754"
CDS complement(14755..17979)
/locus_tag="NAL212_0014"
/inference="protein motif:TFAM:TIGR00914"
/note="KEGG: nmu:Nmul_A2108 heavy metal efflux pump CzcA;
TIGRFAM: Heavy metal efflux pump CzcA;
PFAM: Acriflavin resistance protein"
/codon_start=1
/transl_table=11
/product="CzcA family heavy metal efflux pump"
/protein_id="YP_004296127.1"
/db_xref="GI:325983726"
/db_xref="GO:0008324"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR004763"
/db_xref="GeneID:10299754"
/translation="MFERILHISIYQRGLVLMAVLMMAVIGVYSYQKLSIDAVPDITN
VQVQINTTAPGYSPIEAEQRITFPIEIIMAGLPHLDYTRSISRYGLSQVTVIFKDGTD
VYFARQQVSQRIQEAKGRLPLGIEPMMGPISTGLGEIFMWTVDAKTGAKKPDGTEYTS
TDLREIQDWVIKPQLRMVKGVTEINTLGGFVKQFHVVPYPEKMISFGLSLIDLVTALE
RNNLNVGAGYIERSGEQYLVRIPGQIANLDEIGNIILGSRQGTPIRVKDVADILIGKE
LRTGAATQNGKEVVLGTVHMLIGENSRIVAQAAAKKLEEINRNLPEGIVTTPVYDRTA
LVEKSIHTVATNLLEGAALVIVVLLLFLGNLRAALIAAFVIPLSMLFTFTGMVTNHVS
ANLMSLGAIDFGIIVDGAIVIVENSIRRLAHEQMRLGRELTLAERLELVFDASREARR
VLIYGELIIIIVYLPIFALTSVEGKMFHPMALTVVTALIGAMILSLTFVPAAIAFFLS
GKVKETESPVMAWAKKAYVPVLTATMNNRELTVTIAIVIVILAGLLTTRVGSEFVPSL
NEGDIALHAIRIPGTSLTTAIEMQNKLEETIKTFPEVDRVFSKIGTAEIATDPMPPSV
ADVFIILKPQSEWTGEHRTKAELVDTIEQAVRKVPGNNYEFTQPIQMRFNELISGVRA
DVAVKVFGDDMDTLLALGEAIEHLLATVPGAADVRTEQITGLPVLSIQMDRAKMARYG
LNGRDVQDVVAMSVGGRSTGMIFEGDRRFDLQIRLPEHLRTDIEVLKRLPINVPAQSV
AVAPLNPQVSQATQATQAAGPVFVTLGEVANFEMTQGPNQVSRENGKRRIVITANVRG
RDLGSFVHEAEQLINEKVPIPPGYWTTWGGQFEQMISAAQRLQIVIPIALGLIFILLY
TMFGNVRDGLLMFTGVPFALTGGIFALWLRDIPLSISAGVGFIALSGVAVLNGLMMLA
FIRGLREKGSSLDDAIQTGALTRLRPVLMTALVASIGFLPMALATGTGAEVQRPLATV
VIGGILSSTALTLLVLPVLYRLVHGRDTSNKVTSVDPETKKIQD"
misc_feature complement(14788..17979)
/locus_tag="NAL212_0014"
/note="heavy metal efflux pump, CzcA family; Region:
2A0601; TIGR00914"
/db_xref="CDD:129992"
gene complement(18009..19544)
/locus_tag="NAL212_0015"
/db_xref="GeneID:10299755"
CDS complement(18009..19544)
/locus_tag="NAL212_0015"
/inference="protein motif:TFAM:TIGR01730"
/note="TIGRFAM: Secretion protein HlyD;
KEGG: nmu:Nmul_A2107 secretion protein HlyD"
/codon_start=1
/transl_table=11
/product="RND family efflux transporter MFP subunit"
/protein_id="YP_004296128.1"
/db_xref="GI:325983727"
/db_xref="GO:0008565"
/db_xref="InterPro:IPR006143"
/db_xref="GeneID:10299755"
/translation="MNKTRLRPIIIVIVIGIVLGGLILTAEKPSSVTTDAASMDTDGK
VDEHGTSDMKGHGASNQPGIGPRGGKLFIDGDFSVEMTIFEKGVPPQFRIYLYEKGKL
LPPTAATVAITLSRLGASAQLFKFTPEADYLLGDQIVEEPHSFDIAIAAGRNGKLMRW
SYHQVEGRVEIPDAMLKSMGIEVLTAGPATIKPKLKLPGEVIFNEHNIVRVVPRVPGV
VTAVHGQYGQQVKKDEVLAVVESPMLADLRSQYFVAKKRIALAKTTYEREKQLWEEKI
SAKQEFLLAQELWNEAEIALKLASVKLRALGVQPESNHLKNNYTHYEIRAPISGIIIA
RAIAVGEALKEDREIYTIADVSTVWTAVTVYPKDLNVIRLGQKVAVKATAYDVESEGT
VTYISTLIGGQTRTATARVELDNKEGKWRPGMFLNAELVAEEIEVPVAVSVDAIQTMR
DWSVVFGRYDPYFEVRPLELGRSDGEMIEVLKGLAPGEKYAGGNSFALKAELGKAGAS
HDH"
misc_feature complement(18048..18866)
/locus_tag="NAL212_0015"
/note="Membrane Fusion Protein cluster 2 (function with
RND porters); Region: 8a0102; TIGR00999"
/db_xref="CDD:233229"
misc_feature complement(18276..18578)
/locus_tag="NAL212_0015"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:222128"
gene complement(19569..20996)
/locus_tag="NAL212_0016"
/db_xref="GeneID:10299756"
CDS complement(19569..20996)
/locus_tag="NAL212_0016"
/inference="protein motif:PFAM:PF02321"
/note="PFAM: Outer membrane efflux protein;
KEGG: nmu:Nmul_A2106 outer membrane efflux protein"
/codon_start=1
/transl_table=11
/product="outer membrane efflux protein"
/protein_id="YP_004296129.1"
/db_xref="GI:325983728"
/db_xref="GO:0005215"
/db_xref="InterPro:IPR003423"
/db_xref="GeneID:10299756"
/translation="MKLSDLLIALRYWVSSEVRIILLSSILLLSFSSQIKAGVDSFNI
SPNGIGIKGYLTNSVVNKAGNDLTLRDAVNLALLHNPELAAFSKEIRALEGATLQAGL
LRNPELMVNVENLGNIQKLSGDINSSESVSKEIVQQLTTIRVSQLFELGGKRAARVNA
ASLGEELAAKDYETRRVEMIARVANVFTEVLAAQERFRLAEETMQVAQNVVNTVTKRV
LGGKVPPIEETRVKVGLSTTRIELEQAQRDLTSARKRLALLWNSSFPQFNKALGNLES
LIAPPNFQALETRILDNPMALRAMKNIEHRKALVEVQQTRRIPDLTLNAGVVHHALLG
GSTAVAGLMVPLPLFDRNQGNLKEAYERVDKAVDEQTAMELRLKTELAQSYEAMSAAW
NEINILRDEVLPGAKDAFNVTRRGYELGKFGLLELLDAQRVLFQNQLLYVRALANYQR
LVNDIERLIAMPIDSLPTAQKTSAR"
misc_feature complement(19650..20798)
/locus_tag="NAL212_0016"
/note="type I secretion outer membrane protein, TolC
family; Region: type_I_sec_TolC; TIGR01844"
/db_xref="CDD:233594"
gene complement(21119..21487)
/locus_tag="NAL212_0017"
/db_xref="GeneID:10299757"
CDS complement(21119..21487)
/locus_tag="NAL212_0017"
/inference="similar to AA sequence:KEGG:Nmul_A2105"
/note="KEGG: nmu:Nmul_A2105 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296130.1"
/db_xref="GI:325983729"
/db_xref="GeneID:10299757"
/translation="MRKYSTYPIINMLIISILINGLSLSFRGEVFAHELDHIHQELSS
DPATHLELHHHNTSEDGADLDAATHLCLHSSGQYQPFFFNSFPLIPDQAIVEVLTVFI
SVIIPETIPDLPLRPPRSVS"
sig_peptide complement(21389..21487)
/locus_tag="NAL212_0017"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.827) with cleavage site probability 0.825 at
residue 33"
gene 21977..22726
/locus_tag="NAL212_0018"
/db_xref="GeneID:10299758"
CDS 21977..22726
/locus_tag="NAL212_0018"
/inference="similar to AA sequence:KEGG:NE2376"
/note="KEGG: neu:NE2376 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296131.1"
/db_xref="GI:325983730"
/db_xref="GeneID:10299758"
/translation="MNKMKLLARTLTGIMLMGLGQSVLAHTRLDVPTQTEGTRLINNI
VIGHSCSDTVRVIGTSVVFPNGLDSTILVDGQPHGGSLSDFLTNYGNNFQLLWNRGAF
DAMAEKKDSNGNVVGFWVGGGPGMPSDLNVATPVRLTAAGIEPASCAQNVKISVSIAN
ICEITSVGDFGREGVVDLWTHNNLGTPYDRVSATDDGPASFTITRDLVTNPLPSSCSG
TGVTVEVKPSAAQINRDMPVVIDGQQIWPLP"
sig_peptide 21977..22054
/locus_tag="NAL212_0018"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.997) with cleavage site probability 0.992 at
residue 26"
gene 22931..23392
/locus_tag="NAL212_0019"
/db_xref="GeneID:10299759"
CDS 22931..23392
/locus_tag="NAL212_0019"
/inference="similar to AA sequence:KEGG:Noc_1222"
/note="KEGG: noc:Noc_1222 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296132.1"
/db_xref="GI:325983731"
/db_xref="GeneID:10299759"
/translation="MQPNILKKLSISIFMLAYTIGYAQLSGADEGGAVLDPTGTVRNF
TGYAQITCFDNGNGPADYLEADIIDLSAPVEHLLVNLLLLKGDRAISVSDTVSGDANP
SPSIILQGGNGVYLLVVNKTDVGARQFVVDYHCKTATGIHTGTDINVKQFE"
sig_peptide 22931..23017
/locus_tag="NAL212_0019"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.901) with cleavage site probability 0.624 at
residue 29"
gene 23484..24023
/locus_tag="NAL212_0020"
/db_xref="GeneID:10299760"
CDS 23484..24023
/locus_tag="NAL212_0020"
/inference="protein motif:PFAM:PF08534"
/note="PFAM: Redoxin;
KEGG: nwa:Nwat_1110 redoxin domain-containing protein"
/codon_start=1
/transl_table=11
/product="redoxin domain-containing protein"
/protein_id="YP_004296133.1"
/db_xref="GI:325983732"
/db_xref="GO:0016491"
/db_xref="InterPro:IPR013740"
/db_xref="GeneID:10299760"
/translation="MIQVINEGTRTMIKKIKLLFFIIPVLSLFATASLAEHLKQVSSA
CTLTTLDGKPAHDLQELKGKVVYMDFWASWCPPCVKSFPFLNQLDHELKDKGLHVIGI
NLDEKIADAEDFLAKNPVDFSIVADPSKQCAKGLEVMAMPTSYLIDRKGNIRHIHQGF
RPDESEKLRALITQLVMEP"
sig_peptide 23484..23591
/locus_tag="NAL212_0020"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.981) with cleavage site probability 0.775 at
residue 36"
misc_feature 23619..23960
/locus_tag="NAL212_0020"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:239264"
misc_feature 23670..23942
/locus_tag="NAL212_0020"
/note="Thioredoxin-like; Region: Thioredoxin_8; pfam13905"
/db_xref="CDD:222448"
misc_feature order(23706..23708,23715..23717)
/locus_tag="NAL212_0020"
/note="catalytic residues [active]"
/db_xref="CDD:239264"
gene 24054..24287
/locus_tag="NAL212_0021"
/db_xref="GeneID:10299761"
CDS 24054..24287
/locus_tag="NAL212_0021"
/inference="similar to AA sequence:KEGG:Nhal_2590"
/note="KEGG: nhl:Nhal_2590 arginine decarboxylase"
/codon_start=1
/transl_table=11
/product="arginine decarboxylase"
/protein_id="YP_004296134.1"
/db_xref="GI:325983733"
/db_xref="GeneID:10299761"
/translation="MRKIRYYATIFVSILAMGIGGTGCVNIAPWERGILAKPQMELDP
HPLQSELQSHNYSSREAAPSHKSSSGGGGCGCY"
misc_feature 24132..>24239
/locus_tag="NAL212_0021"
/note="Domain of unknown function (DUF4266); Region:
DUF4266; pfam14086"
/db_xref="CDD:206256"
gene 24340..27045
/locus_tag="NAL212_0022"
/db_xref="GeneID:10299762"
CDS 24340..27045
/locus_tag="NAL212_0022"
/inference="protein motif:PFAM:PF12094"
/note="PFAM: Protein of unknown function DUF3570;
KEGG: nhl:Nhal_2591 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296135.1"
/db_xref="GI:325983734"
/db_xref="InterPro:IPR021953"
/db_xref="GeneID:10299762"
/translation="MPPYQGGNHQSGTLEAPPVKSRNTLHALTSAALVLPGLLITPGH
AVGKDRINFQYSRYQEGERNLYGVPSLKPISADVLHGSGIFSLTDRTKFSFGYTQDTW
SGATPVTTTPLATDGGNRAYFNNGVVVGASPLLQSNVLLDRDLNPIGRDPITKQSLGV
VDTRSVMVMSSASPETRRQANFGLSHEWNEAAINVAGGFSRERDYKSSFGSIGGRLDF
NQKLTSIKFNGGYTQSEIGAILDHDSSPYITKTAYLPQIVSRGGSEILKGNRQDWVAN
VGVSQVLTKNALVDVNIGYTHSNGFQENPYKTMSVIFIDPAELNNGQSNLITGKVRAL
IEQRPDIRNQVALNTKYIQYISPFNAALHLGYRLSVDDWGVNTHTFDANWVQPIGSGW
TLTPRIRYYSQDAASFYRSYLFSQQAFQKQAVDSLGREIFFNPKNPNEQYFRDGFFNY
VDQNGNRIDDALSQTVQPKFITYDAGKLPENFSSDHRLAGFGALSGGVVLSKMLAKGV
ALETGFEYYTRASSMQIGSGNNSFADFDYYVANAAIKFDIEPTTSLPIGGSSGSSGSH
VHASSHHHHKIPPAGIMFGHMLDKPGDFMAGYRFMYNWTGGNMMHGTHSVADQTIVDQ
GCSDASPCRFTPTFMNMRMHMLDIMYAPTKWWNVMLMPTFMDMDMNLRRLSGAPPAAP
GVHEHTGAAGHETGAVGDTYFSSLVKLINIPGHRVHMNLGLSAPTGKVDIELRRMAKI
DGGLIHFGMQLGSGTWDFMPSLTYAGEKSRWSWGAQLSGVKRLEEKNKSGYRLGDMFQ
ATTWGGYDLTQWLTASVRGAYTLQGAVHRDFDAFNARIGPMDFPANYGGQFWDIGLGL
NAIIPGGRFAGNRFGFEWIQPVRNDFNGFQLDRKGMLSATWSYRF"
misc_feature 24418..25971
/locus_tag="NAL212_0022"
/note="Protein of unknown function (DUF3570); Region:
DUF3570; pfam12094"
/db_xref="CDD:221418"
misc_feature <26431..>26805
/locus_tag="NAL212_0022"
/note="Putative MetA-pathway of phenol degradation;
Region: Phenol_MetA_deg; cl01768"
/db_xref="CDD:242697"
gene 27229..28276
/locus_tag="NAL212_0023"
/pseudo
/db_xref="GeneID:10299763"
gene complement(28776..29195)
/locus_tag="NAL212_0024"
/db_xref="GeneID:10299831"
CDS complement(28776..29195)
/locus_tag="NAL212_0024"
/inference="protein motif:TFAM:TIGR01396"
/note="KEGG: slt:Slit_0565 flagellar basal-body rod
protein FlgB;
TIGRFAM: Flagellar basal-body rod protein FlgB;
PFAM: Flagellar basal body rod protein, N-terminal"
/codon_start=1
/transl_table=11
/product="flagellar basal-body rod protein FlgB"
/protein_id="YP_004296136.1"
/db_xref="GI:325983735"
/db_xref="InterPro:IPR001444"
/db_xref="InterPro:IPR006300"
/db_xref="GeneID:10299831"
/translation="MISKLDNDKELNLYHQALNLRAARQELLASNVANADTPNFKARD
IDFSSVLREKLSLTTNITQVGLITTSSGHISTSPAGILGGDNLLYRVPLQPSADGNTV
DMNMERTQFADNSIKYDVILTLIKDKFDDLSLAMQER"
misc_feature complement(28785..29195)
/locus_tag="NAL212_0024"
/note="flagellar basal body rod protein FlgB; Reviewed;
Region: flgB; PRK05680"
/db_xref="CDD:180196"
misc_feature complement(28785..29171)
/locus_tag="NAL212_0024"
/note="flagellar basal body rod protein FlgB; Reviewed;
Region: flgB; PRK07182"
/db_xref="CDD:75964"
gene complement(29483..29923)
/locus_tag="NAL212_0025"
/db_xref="GeneID:10299764"
CDS complement(29483..29923)
/locus_tag="NAL212_0025"
/inference="protein motif:PFAM:PF01464"
/note="PFAM: Lytic transglycosylase-like, catalytic;
KEGG: axy:AXYL_06548 transglycosylase SLT
domain-containing protein 6"
/codon_start=1
/transl_table=11
/product="Lytic transglycosylase catalytic"
/protein_id="YP_004296137.1"
/db_xref="GI:325983736"
/db_xref="InterPro:IPR008258"
/db_xref="GeneID:10299764"
/translation="MDLPPDMQERVVCSITAAIKYEIPANILLAIAEKEGGKPGQFVR
NSNGTHDVGSMQFNTLFLQDLSKYGITPDHVANAGCYAYDLAAWRVRLHIKNDKGDIW
TRVANYHSRTPKYNAKYRADLIVRAVKWADWLEDRFLSSNTHNQ"
misc_feature complement(<29576..29848)
/locus_tag="NAL212_0025"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs...; Region: LT_GEWL;
cd00254"
/db_xref="CDD:238157"
misc_feature complement(order(29600..29602,29657..29659,29750..29752,
29819..29821))
/locus_tag="NAL212_0025"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:238157"
misc_feature complement(29819..29821)
/locus_tag="NAL212_0025"
/note="catalytic residue [active]"
/db_xref="CDD:238157"
gene complement(29955..31043)
/locus_tag="NAL212_0026"
/db_xref="GeneID:10299765"
CDS complement(29955..31043)
/locus_tag="NAL212_0026"
/inference="protein motif:TFAM:TIGR02783"
/note="TIGRFAM: Conjugal transfer, TrbL;
KEGG: pau:PA14_15540 putative mating pair formation
protein TrbL"
/codon_start=1
/transl_table=11
/product="P-type conjugative transfer protein TrbL"
/protein_id="YP_004296138.1"
/db_xref="GI:325983737"
/db_xref="InterPro:IPR014150"
/db_xref="GeneID:10299765"
/translation="MFRTPVTFYFLFFLLFFSAGAFAELAYIDPATNQSVLDQVVNKF
QGKVKSWQNIIQAAAERLFWTLVLISMVWTFGMMLLRKADIGDFFAEFTRFIIFTGFY
FWLLTNAVSGHNIAGTIIDSMQQLGGTAAGLPSGASHSSIMDIGVLIWNQATHSLTFM
QPMDSLMGFVISLIILIILAVIAVNMLLLLISSWVLMYAGIFFLGFGGARWTSDIAIN
YFKTVLGIGIQLFVMLLIVGIGSDLLSSFYAKMGKNVMNYEELAVMLIFTIAFFVLIS
RLPSLLAGIITGSSIGSSTGIGSYGAGGFMAAAGTAAAVASYGGSLAADRLAAARSTG
PDALRSAIEKGQAQESAGMNNISQGGGK"
sig_peptide complement(30972..31043)
/locus_tag="NAL212_0026"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.998) with cleavage site probability 0.984 at
residue 24"
misc_feature complement(30207..30953)
/locus_tag="NAL212_0026"
/note="TrbL/VirB6 plasmid conjugal transfer protein;
Region: TrbL; cl01503"
/db_xref="CDD:242540"
gene complement(31076..31267)
/locus_tag="NAL212_0027"
/db_xref="GeneID:10299766"
CDS complement(31076..31267)
/locus_tag="NAL212_0027"
/inference="similar to AA sequence:KEGG:BpOF4_14260"
/note="KEGG: bpf:BpOF4_14260 ABC transporter
(substrate-binding protein)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296139.1"
/db_xref="GI:325983738"
/db_xref="GeneID:10299766"
/translation="MKKSDLSIAVICLLSLLLLSGCYKDGDGKLELKEPKKELSEMPE
RKSWFETPISQQPTNGSQE"
sig_peptide complement(31193..31267)
/locus_tag="NAL212_0027"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.914) with cleavage site probability 0.754 at
residue 25"
gene complement(31291..32091)
/locus_tag="NAL212_0028"
/db_xref="GeneID:10299767"
CDS complement(31291..32091)
/locus_tag="NAL212_0028"
/inference="protein motif:TFAM:TIGR02780"
/note="TIGRFAM: P-type conjugative transfer protein TrbJ;
KEGG: axy:AXYL_06544 P-type conjugative transfer protein
TrbJ"
/codon_start=1
/transl_table=11
/product="P-type conjugative transfer protein TrbJ"
/protein_id="YP_004296140.1"
/db_xref="GI:325983739"
/db_xref="InterPro:IPR014147"
/db_xref="GeneID:10299767"
/translation="MINSKNLAIQWIAISLSLGILSYSSINKAGGMAVIDMANVKQST
ITAIEAINQTEKQIEQYRTQLQQYENMIRNTLAPPAYVWAKVEYTMTKLINLSNSIRY
YEQQYGGLDSYMQRFRNVEYYRSSSCFTLEEKCSDSAWKLLQDGQNTSTDSQKHANDS
LLRGLSEHQNQIPLDAAHLQLLQQKTQSAQGQMEAFQYANQLAAYQANQLLQMRQMLI
AQHNAFNTKNQAEVDQKAMQQAAREAATKRLSPEILPAGRNWSVRDAF"
misc_feature complement(31351..32004)
/locus_tag="NAL212_0028"
/note="conjugal transfer protein TrbJ; Provisional;
Region: PRK13879"
/db_xref="CDD:184363"
gene complement(32109..33521)
/locus_tag="NAL212_0029"
/db_xref="GeneID:10299768"
CDS complement(32109..33521)
/locus_tag="NAL212_0029"
/inference="protein motif:PFAM:PF03743"
/note="PFAM: Type IV secretion system, VirB10 / TraB /
TrbI;
KEGG: bam:Bamb_6628 conjugal transfer protein TrbI"
/codon_start=1
/transl_table=11
/product="conjugation TrbI family protein"
/protein_id="YP_004296141.1"
/db_xref="GI:325983740"
/db_xref="InterPro:IPR005498"
/db_xref="GeneID:10299768"
/translation="MSTNSKLLSPDSSPDVVARSAGVRRVNNLPIVIFGAIMLIFMLL
MMIVAMNRAAERGQYDSAANSDIQSSNSFASLIAKDYIGGIIEPKAQSINSDSAAKSP
IQRIIIERPSDLDRPPLPPTLNAVTDPSHHADIEHIRMLKRQQLEEAIKAKTNVNVIA
PRSTGSSPDLTNTGAPKTREEMLAKLASVRQQIDANLREDPTAAYHARLARLRQDGES
SVAGGMGAGRGDEFMNDGAPRLLDDDVGREAQDYSRFDSAKGDARWNLDSEVKKPPTP
YVLQTGFVIPATLISGINSSLPGQIMAQVSQHIYDSPIGKWRLIPQGSRLVGTYSSEV
EFGQARVLVAWQRIIFPDGKTMDIGAMPGADGVGYSGFRDQVNNHYLRIFGSALIMSA
IVAGSTYSQRDSGGAFGRQNAGSIMSQSLGQQLGLVTANLIRKNLNISPTLEIRPGYR
FNIIVTKDMKFSKPYQSFDY"
misc_feature complement(32112..33521)
/locus_tag="NAL212_0029"
/note="conjugal transfer protein TrbI; Provisional;
Region: PRK13881"
/db_xref="CDD:237541"
misc_feature complement(32124..>32726)
/locus_tag="NAL212_0029"
/note="Bacterial conjugation TrbI-like protein; Region:
TrbI; cl04242"
/db_xref="CDD:243680"
gene complement(33534..34031)
/locus_tag="NAL212_0030"
/db_xref="GeneID:10299769"
CDS complement(33534..34031)
/locus_tag="NAL212_0030"
/inference="protein motif:PFAM:PF07283"
/note="PFAM: Conjugal transfer, TrbH;
KEGG: app:CAP2UW1_4726 conjugal transfer protein TrbH"
/codon_start=1
/transl_table=11
/product="Conjugal transfer TrbH family protein"
/protein_id="YP_004296142.1"
/db_xref="GI:325983741"
/db_xref="InterPro:IPR010837"
/db_xref="GeneID:10299769"
/translation="MRPNSLIIIFLLLLGGCATQPYGSFIQNPSTIYSKVMADEVTAQ
IVRLYRAANTQFNLRHAVNDPFGHALIENLRLEGFAVQERINSDNSLFVSRILMGDSI
PDIAINHETDGASQPARLALSYIIDQSGDLYHVNITIDDTRLSRAFVAQADSVHPAGL
WVRKE"
misc_feature complement(33537..34031)
/locus_tag="NAL212_0030"
/note="conjugal transfer protein TrbH; Provisional;
Region: PRK13883"
/db_xref="CDD:184367"
sig_peptide complement(33960..34031)
/locus_tag="NAL212_0030"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.775) with cleavage site probability 0.314 at
residue 24"
misc_feature complement(33537..33944)
/locus_tag="NAL212_0030"
/note="Conjugal transfer protein TrbH; Region: TrbH;
pfam07283"
/db_xref="CDD:148724"
gene complement(34034..34942)
/locus_tag="NAL212_0031"
/db_xref="GeneID:10299770"
CDS complement(34034..34942)
/locus_tag="NAL212_0031"
/inference="protein motif:TFAM:TIGR02775"
/note="KEGG: axy:AXYL_06541 P-type conjugative transfer
protein TrbG;
TIGRFAM: P-type conjugative transfer protein TrbG;
PFAM: Conjugal transfer, TrbG/VirB9/CagX"
/codon_start=1
/transl_table=11
/product="P-type conjugative transfer protein TrbG"
/protein_id="YP_004296143.1"
/db_xref="GI:325983742"
/db_xref="InterPro:IPR010258"
/db_xref="InterPro:IPR014142"
/db_xref="GeneID:10299770"
/translation="MKPLLSLRKLSTLIFSLGLVAPSYAAGLSDAYFTDKNPQLTPQE
RAAIDLAKKWQAVNPSGTKPVAGPDGSIRFLFGSQQPSIVCAVLQVCDIELQPGEQVN
SIHLGDQARWLVEPAVTGQGALEVQHLIIKPLDVGLETSLVVTTNRRTYHMRLRSHRR
DFMPRVGFTYPEDALAKWDAIKSRESHAMDIRRSNTIAQTGEYLGNLDFAYSVDGSAA
WKPLRVYNDGHKTIIQMPSIMAQTEAPTLLLLTKEGGLFREDETVMVNYRLQGDRYIV
DAVFDKAMLIAGVGGNQSRVTITRGN"
sig_peptide complement(34865..34942)
/locus_tag="NAL212_0031"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.971 at
residue 26"
misc_feature complement(34040..34330)
/locus_tag="NAL212_0031"
/note="VirB9/CagX/TrbG, a component of the type IV
secretion system; Region: VirB9_CagX_TrbG; cd06911"
/db_xref="CDD:132874"
misc_feature complement(order(34046..34066,34091..34093,34268..34285,
34298..34318))
/locus_tag="NAL212_0031"
/note="VirB7 interaction site; other site"
/db_xref="CDD:132874"
gene complement(34957..35733)
/locus_tag="NAL212_0032"
/db_xref="GeneID:10299771"
CDS complement(34957..35733)
/locus_tag="NAL212_0032"
/inference="protein motif:PFAM:PF04335"
/note="PFAM: VirB8;
KEGG: app:CAP2UW1_4728 conjugal transfer protein TrbF"
/codon_start=1
/transl_table=11
/product="VirB8 family protein"
/protein_id="YP_004296144.1"
/db_xref="GI:325983743"
/db_xref="InterPro:IPR007430"
/db_xref="GeneID:10299771"
/translation="MSVISDFFKLRIAGKIKSNKQIREDYEFMEGGRRSGENENPYLS
ARRTWNDHMREVQASRNMWQMLALLCLLIALAGVGGVIAIGSQSKFIPYVVQVNKLGE
AVAVSRADIAAVADQRVVHASVAAFINDLRMVTPDIALQRRAIFRAYAMLSNNDPATA
KANEWFNSSEASSPFKRAETQTVNVEIISVIPQSPETWQVDWLEKVYDRQGHLTEPPF
KMRALLRVYNKPTTQSTTEEQIRNNPLGIYIQDFSWSKQT"
misc_feature complement(34963..35637)
/locus_tag="NAL212_0032"
/note="VirB8 protein; Region: VirB8; cl01500"
/db_xref="CDD:242538"
gene complement(35733..38267)
/locus_tag="NAL212_0033"
/db_xref="GeneID:10299772"
CDS complement(35733..38267)
/locus_tag="NAL212_0033"
/inference="protein motif:TFAM:TIGR00929"
/note="TIGRFAM: CagE, TrbE, VirB component of type IV
transporter system;
PFAM: CagE, TrbE, VirB component of type IV transporter
system, central domain;
KEGG: eba:p2B4 conjugal transfer protein TrbE;
SMART: ATPase, AAA+ type, core"
/codon_start=1
/transl_table=11
/product="type IV secretion/conjugal transfer ATPase"
/protein_id="YP_004296145.1"
/db_xref="GI:325983744"
/db_xref="GO:0005524"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR004346"
/db_xref="InterPro:IPR018145"
/db_xref="GeneID:10299772"
/translation="MIAAMIILIAMCGALLLLMLFLRIRDAGKELRLDQHRSKEMGFA
DLLVYAAVVEDGVIVGKNGALMAAWIFCGDDTASSTDTERERVSFRINQALSRLGNGW
MIHVDAIRKPALAYSDKAHSNYPDPITAAIDQERRNLFERIGTMYESCFIVSLTYLPP
MLAQRKFVELMFDDDTQPLDQKARTQGLLEYFQRECANFESRLSSVFHLSRLKSRKLV
NEDGTTITHDDFLQWLQLCITGLDHPMVLPDNPMYLDTLLGGQEMWGGVVPKIGRNFV
QVVSIEGFPLESSPGMLNLLSELPGVYRWSSRFIFMDTHEAVNHLEKYRRRWKQKIRG
FLDQVFNLQSSNIDEDALNMVDDAQSAIAETNSGMVGQGYYTSVVVLMMEDRAALEEA
GRRVEKAINHLGFAARVETINTMDAYLGSLPGHGVENVRRPLINTMNLADLLPVNTIW
TGKPIAPCPMYPPNSPPLMHCVTQGATPFRLNLHVRDLGHTFMFGPTGAGKSTHLALI
AAQLRRYQGMSIYCFDKGMSMYPLTRAVGGQHFTVAGDDESLAFCPLQFLQSKSDRAW
ALEWICLMVELNGITVTPLQRNEISQAIANMHQSGSRTLSDFLVTIQDETIREALRQY
TIDGMMGHLLDAEADGLNLSSFTTFEIEELMNLGDKYALPTLLYLFRRIERSLHGQPS
AIILDEAWLMLGHPVFRAKIREWLKVMRKNNCLVLMATQSLSDAANSGILDVIVESTA
TKIFLPNVFARDEEASALYRRMGLNSRQIEILASAIPKQQYYTVSENGRRLYDLALGP
LALALIGSTDKESIATIKNLHDKHGDKWVIEWLAIKGLTLSDYGVA"
misc_feature complement(35736..38201)
/locus_tag="NAL212_0033"
/note="conjugal transfer protein TrbE; Provisional;
Region: PRK13891"
/db_xref="CDD:184375"
misc_feature complement(36975..37625)
/locus_tag="NAL212_0033"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:217382"
misc_feature complement(<36531..36827)
/locus_tag="NAL212_0033"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(36762..36785)
/locus_tag="NAL212_0033"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(36759..36767,36771..36776))
/locus_tag="NAL212_0033"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
gene complement(38264..38575)
/locus_tag="NAL212_0034"
/db_xref="GeneID:10299773"
CDS complement(38264..38575)
/locus_tag="NAL212_0034"
/inference="protein motif:PFAM:PF05101"
/note="PFAM: Type IV secretion system, VirB3 / TrbD /
AvhB;
KEGG: ajs:Ajs_4272 conjugal transfer protein TrbD"
/codon_start=1
/transl_table=11
/product="type IV secretory pathway VirB3 family protein"
/protein_id="YP_004296146.1"
/db_xref="GI:325983745"
/db_xref="InterPro:IPR007792"
/db_xref="GeneID:10299773"
/translation="MALRTIPIRQSGNRPNLFMGGDRELVMFSILIAATSIFVAMEIK
ATIFGIALWFFALFALRLMAKNDPQLRHVYLRQIQYKKYYPARSTPFYDNTLTQEKQH
L"
misc_feature complement(38294..38575)
/locus_tag="NAL212_0034"
/note="conjugal transfer protein TrbD; Provisional;
Region: PRK13823"
/db_xref="CDD:184348"
gene complement(38595..38990)
/locus_tag="NAL212_0035"
/db_xref="GeneID:10299774"
CDS complement(38595..38990)
/locus_tag="NAL212_0035"
/inference="protein motif:PFAM:PF04956"
/note="PFAM: Conjugal transfer,TrbC;
KEGG: bam:Bamb_6634 conjugal transfer protein TrbC"
/codon_start=1
/transl_table=11
/product="conjugal transfer protein Trbc"
/protein_id="YP_004296147.1"
/db_xref="GI:325983746"
/db_xref="InterPro:IPR007039"
/db_xref="GeneID:10299774"
/translation="MKLISIKGISPFGCIYSFVVLFLLLLSADQAQATVGAGGALPYE
TWLVSLRNSVTGPVAFTLSIVGIVVAGGILIFGGELNAFFRTLIFIVLVMALLVGANN
VMTNLFQGAVIPGGASGTIVALEEAIPQS"
sig_peptide complement(38895..38990)
/locus_tag="NAL212_0035"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.927) with cleavage site probability 0.466 at
residue 32"
misc_feature complement(38652..>38900)
/locus_tag="NAL212_0035"
/note="TrbC/VIRB2 family; Region: TrbC; cl01583"
/db_xref="CDD:242590"
gene complement(39012..39971)
/locus_tag="NAL212_0036"
/db_xref="GeneID:10299775"
CDS complement(39012..39971)
/locus_tag="NAL212_0036"
/inference="protein motif:TFAM:TIGR02782"
/note="TIGRFAM: ATPase, P-type conjugative transfer, TrbB;
PFAM: Type II secretion system protein E;
KEGG: llo:LLO_2875 LvhB11;
SMART: ATPase, AAA+ type, core"
/codon_start=1
/transl_table=11
/product="P-type conjugative transfer ATPase TrbB"
/protein_id="YP_004296148.1"
/db_xref="GI:325983747"
/db_xref="InterPro:IPR001482"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR014149"
/db_xref="GeneID:10299775"
/translation="MSDHLPNITTVKDRAKSKLERDAREILSALQDPETVEIMVNADG
RIWQEKLGQKIQHIGNIQAAQVEAVIKTVAGFHGKEINRFNPIIEGEFPLDNSRFAGQ
LPPIVTAPTFAIRKKAIKIFTLEQYVETGVLSPRYRDVIKEAVRKHRNILVIGGTGSG
KTTLINAIINEMVLCDPDERIFILEDTGEIQCAAQNFVQYHTTLDVDMTQLLKTTLRM
RPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHANDAMSGLTRLESLISRNPSAPKE
IMPLIAEAVDMVVHITRAPHGRQIQQIIEVQGFKRGNYQIKKL"
misc_feature complement(39015..39968)
/locus_tag="NAL212_0036"
/note="conjugal transfer ATPase TrbB; Provisional; Region:
PRK13894"
/db_xref="CDD:184377"
misc_feature complement(39057..39602)
/locus_tag="NAL212_0036"
/note="Type IV secretory pathway component VirB11, and
related ATPases. The homohexamer, VirB11 is one of eleven
Vir proteins, which are required for T-pilus biogenesis
and virulence in the transfer of T-DNA from the Ti
(tumor-inducing) plasmid of bacterial to...; Region:
VirB11-like_ATPase; cd01130"
/db_xref="CDD:238550"
misc_feature complement(order(39078..39080,39483..39500,39591..39593))
/locus_tag="NAL212_0036"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238550"
misc_feature complement(order(39486..39494,39504..39509))
/locus_tag="NAL212_0036"
/note="Walker A motif; other site"
/db_xref="CDD:238550"
misc_feature complement(order(39093..39095,39189..39191,39198..39200,
39210..39218,39246..39251,39258..39260,39270..39272,
39309..39311,39315..39323,39369..39374,39378..39389,
39408..39410,39432..39434,39498..39503))
/locus_tag="NAL212_0036"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:238550"
misc_feature complement(39291..39308)
/locus_tag="NAL212_0036"
/note="Walker B motif; other site"
/db_xref="CDD:238550"
gene complement(40058..40420)
/locus_tag="NAL212_0037"
/db_xref="GeneID:10299776"
CDS complement(40058..40420)
/locus_tag="NAL212_0037"
/inference="protein motif:PFAM:PF01381"
/note="KEGG: app:CAP2UW1_4733 conjugal transfer protein
TrbA;
PFAM: Helix-turn-helix type 3;
SMART: Helix-turn-helix type 3"
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="YP_004296149.1"
/db_xref="GI:325983748"
/db_xref="GO:0043565"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:10299776"
/translation="MYNLILTTNILRILREKKITKAELAEKAGISISFITELTNDKAN
PSLRVIEAIAKALDTPLPLLFDNSDMSTAERALLADGSAGHLAKGFVWKGAVLSEFQA
FQVAQWDRENREIIRKLK"
misc_feature complement(40067..40420)
/locus_tag="NAL212_0037"
/note="conjugal transfer protein TrbA; Provisional;
Region: PRK13890"
/db_xref="CDD:237547"
misc_feature complement(40229..40375)
/locus_tag="NAL212_0037"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature complement(order(40298..40303,40313..40315,40322..40324,
40355..40360))
/locus_tag="NAL212_0037"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
misc_feature complement(40304..40306)
/locus_tag="NAL212_0037"
/note="salt bridge; other site"
/db_xref="CDD:238045"
gene 40849..41913
/locus_tag="NAL212_0038"
/db_xref="GeneID:10299777"
CDS 40849..41913
/locus_tag="NAL212_0038"
/inference="protein motif:TFAM:TIGR00180"
/note="TIGRFAM: ParB-like partition protein;
PFAM: Transcriptional repressor protein, KorB; ParB-like
nuclease;
KEGG: axy:AXYL_06612 transcriptional repressor protein
KorB;
SMART: ParB-like nuclease"
/codon_start=1
/transl_table=11
/product="parB-like partition protein"
/protein_id="YP_004296150.1"
/db_xref="GI:325983749"
/db_xref="GO:0003677"
/db_xref="InterPro:IPR003115"
/db_xref="InterPro:IPR004437"
/db_xref="InterPro:IPR013741"
/db_xref="GeneID:10299777"
/translation="MTSKKTLSDERNKAPNVLGASQISLDLIMEDAAQPRKTFDAASL
AELTETIKLRGVKTPISVRPNPDKPGTYIINHGARRYRASKNAGLRSIPAYIDADYSL
ADQVVENLQRDNLTSREIVDYIGREIAAGKTHEQIGKFIGKSASYVSLHAAAMDLPDP
IAELFNSGNLTDIAAIFNLKKIFKTYPLELVDWLKYSRPEDITRTKIQQFRKFLESKD
DEKGIVDELTRQAPYPATDSLETKAEKKERGHKSPADQLLVYIYVRLKKRTHQPKDIM
KKLSDAQKTMITDTLKAYFIAGQKCKDLFQSILYSLKDGDFDGTGRGAFNLTAFFFGV
NKKEFDLEMIIQEVYLNLSK"
misc_feature 40903..41391
/locus_tag="NAL212_0038"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:232860"
misc_feature 40915..41178
/locus_tag="NAL212_0038"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:214678"
misc_feature 41233..41499
/locus_tag="NAL212_0038"
/note="KorB domain; Region: KorB; pfam08535"
/db_xref="CDD:219889"
gene 41910..42275
/locus_tag="NAL212_0039"
/db_xref="GeneID:10299778"
CDS 41910..42275
/locus_tag="NAL212_0039"
/inference="similar to AA sequence:KEGG:p2A235"
/note="KEGG: eba:p2A235 putative conjugation protein TraO"
/codon_start=1
/transl_table=11
/product="putative conjugation protein TraO"
/protein_id="YP_004296151.1"
/db_xref="GI:325983750"
/db_xref="GeneID:10299778"
/translation="MKQRLLVMNGQRILQNFIDNEWKTAGLIKKAEEGIKPGIYNIYL
AKTAETNNKVYEGLILFIDKQEGLVYQQVNKDFVSHKLELFSPPPPLGKNVSIQYENQ
EKLNLIKIDAVSNKKTHKI"
gene 42481..42606
/locus_tag="NAL212_0040"
/db_xref="GeneID:10299779"
CDS 42481..42606
/locus_tag="NAL212_0040"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296152.1"
/db_xref="GI:325983751"
/db_xref="GeneID:10299779"
/translation="MSRVTALARLLNGTPILDISIPDTNKTVNLLKEPLFFSFIL"
gene complement(42787..44199)
/locus_tag="NAL212_0041"
/db_xref="GeneID:10299780"
CDS complement(42787..44199)
/locus_tag="NAL212_0041"
/inference="similar to AA sequence:KEGG:Cphy_1686"
/note="KEGG: cpy:Cphy_1686 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296153.1"
/db_xref="GI:325983752"
/db_xref="GeneID:10299780"
/translation="MISLRNKKLAYKMINHKGIEMENRANNDSIALRIFLLLVFLLVF
VNLAQTSKAETIKKSIPDNIIYVVSNDPVENGNSILAYKRDQDGNLTPLSGSPFLTSG
KGYATKEKEYGLPHFGPFDLDQNIIFNQEKTRLFATNGGSDSIAVFDIQSDGTLKAVP
GSPFPSGGKNPVSLGLAGDKLYVVNKNEDPGRDMTKTKPNYTGFRVNPNGILIPIPNS
TIELATASRSPTQALIVKERFIFDGDFGRFPLASRVAMWGEDLKKDTPSMIRSFRIKP
NGTLEQNPPTPAPPGAFDGGLDVDNDGEPDPLMFGLQKHPTKQLIYVSMVSGARMAVF
SYDDRGKLSLENIVTNKGQLICWIKINKKGTRAYTTNNGDNTVSVYDLTDPINPKEIQ
TLKLKGNGHPYQLDLDSKESFMYIVKHRTFPETPIGKGNELDVLKIKEDGTLEEVSSS
PIKLPVRDDLLARPQGVAAL"
misc_feature complement(<43051..43830)
/locus_tag="NAL212_0041"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3391"
/db_xref="CDD:225926"
gene complement(44343..44927)
/locus_tag="NAL212_0042"
/db_xref="GeneID:10299781"
CDS complement(44343..44927)
/locus_tag="NAL212_0042"
/inference="similar to AA sequence:KEGG:Swoo_1074"
/note="KEGG: swd:Swoo_1074 cytochrome c, class I"
/codon_start=1
/transl_table=11
/product="cytochrome c, class I"
/protein_id="YP_004296154.1"
/db_xref="GI:325983753"
/db_xref="GeneID:10299781"
/translation="MSWLSNLKMSAFFFSMVFAISTVATPKVGYSMEMHNFSPYVDKS
GNISLPPDFRISMVHLGSWLIPEGDASGFHDVYTEAETAIHYRKTGKFPDGATIVKEL
REAKFGDYTTGKKVGYASSNIKLWFVMVKDTQGRFHGNQSWGDGWGWALIKTDDVNKN
TSTDYKKDCLGCHVPAKDKDWVYVNEYPTLVAPK"
sig_peptide complement(44853..44927)
/locus_tag="NAL212_0042"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.949) with cleavage site probability 0.894 at
residue 25"
gene complement(44927..45517)
/locus_tag="NAL212_0043"
/db_xref="GeneID:10299782"
CDS complement(44927..45517)
/locus_tag="NAL212_0043"
/inference="similar to AA sequence:KEGG:Swoo_1073"
/note="KEGG: swd:Swoo_1073 cytochrome P460"
/codon_start=1
/transl_table=11
/product="cytochrome P460"
/protein_id="YP_004296155.1"
/db_xref="GI:325983754"
/db_xref="GeneID:10299782"
/translation="MKRKFSLVGLIMMSTVALLTANAVSAKESFTIKNGELQRPTGYR
EWIQVGTPLTPNDMNDGKANFPEFHNVYIDPESWDHWKKTGKFREGTVFVKEMVSVGS
KSAASGNGYFMGEFIGLEVTIKSKAAFPNEPGNWAYFSFSSPDHKTIKETAQAFPAAA
CNSCHEKSAKDDFVFTQYYPVLRAAKNDPIKAIGGK"
sig_peptide complement(45437..45517)
/locus_tag="NAL212_0043"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.786 at
residue 27"
gene 45752..46648
/locus_tag="NAL212_0044"
/db_xref="GeneID:10299783"
CDS 45752..46648
/locus_tag="NAL212_0044"
/inference="protein motif:PFAM:PF03466"
/note="PFAM: LysR, substrate-binding; HTH transcriptional
regulator, LysR;
KEGG: plm:Plim_1664 LysR substrate-binding protein"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_004296156.1"
/db_xref="GI:325983755"
/db_xref="GO:0003700"
/db_xref="InterPro:IPR000847"
/db_xref="InterPro:IPR005119"
/db_xref="GeneID:10299783"
/translation="MQLHQLKYFVSVAKTGSITKAAEACFISQPSLSQQLKKLEGIVG
KRLFSRIKGKLVLTKPGQILYEHACKILRSVDDAKVEMKEVDQNSGGLIRVGILPTLA
PFILPKILESLSQKYPQANVIIREEVSEVLINAASCGELDILIEVLPFDQSNLTIESL
FFDTFYLAVHQNSPLAKLKEVHVNQLEGMPFILLEDIHCLTKQIEHFCFNENFIPKAV
FQASQIGTIKLLIESQYGISILPSISMKHKDEQNICYIKLIGNDKQIPGREVVLAISN
DRYLSPAASFLIKTIKEHFRNM"
misc_feature 45752..46639
/locus_tag="NAL212_0044"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:223656"
misc_feature 45758..45937
/locus_tag="NAL212_0044"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:215735"
misc_feature 46028..46624
/locus_tag="NAL212_0044"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(46070..46075,46079..46084,46091..46093,46103..46105,
46109..46129,46403..46420,46436..46441,46445..46450)
/locus_tag="NAL212_0044"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(46671..47024)
/locus_tag="NAL212_0045"
/db_xref="GeneID:10299784"
CDS complement(46671..47024)
/locus_tag="NAL212_0045"
/inference="similar to AA sequence:KEGG:Nmul_B2811"
/note="KEGG: nmu:Nmul_B2811 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296157.1"
/db_xref="GI:325983756"
/db_xref="GeneID:10299784"
/translation="MTKERAHLNLSDDLDISEFLPVKKERNRETELKTLEKVAEQSGF
VSRKNKSQRRRKPQSPFKNQLNLKCRDGIKELFQDIGEQLGVHDHTTFEQALLALIEK
NGLNDLLQRYREIAK"
gene complement(47017..47709)
/locus_tag="NAL212_0046"
/db_xref="GeneID:10299785"
CDS complement(47017..47709)
/locus_tag="NAL212_0046"
/inference="similar to AA sequence:KEGG:Nmul_B2810"
/note="KEGG: nmu:Nmul_B2810 ParA protein, putative"
/codon_start=1
/transl_table=11
/product="ParA protein"
/protein_id="YP_004296158.1"
/db_xref="GI:325983757"
/db_xref="InterPro:IPR009744"
/db_xref="GeneID:10299785"
/translation="MPIIVFASSKGGAGKTTAAIVLASELAQHNTSVTLIDADPNQHS
AKWAMKDGCPSNIKLVEKSTEETIIDDIDNAQEQTAFVLVDLEGTASMAVASAISRAD
LVITLCQGSQDDADEAAKTIKLVNRQAKVLNRSIPFAVLMTRTNPAITPRTLKHIMNE
FRDAGVDIFKTSLIDREAFRAIRSFGGTVNDLDPKQVSGIEKATANAHALAVEVIERI
KGIKRERGQSHD"
misc_feature complement(47041..47709)
/locus_tag="NAL212_0046"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:224113"
misc_feature complement(47281..47703)
/locus_tag="NAL212_0046"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:238997"
misc_feature complement(47662..47682)
/locus_tag="NAL212_0046"
/note="P-loop; other site"
/db_xref="CDD:238997"
misc_feature complement(order(47455..47457,47662..47664))
/locus_tag="NAL212_0046"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:238997"
gene complement(48310..48685)
/locus_tag="NAL212_0047"
/pseudo
/db_xref="GeneID:10299786"
gene 49303..50488
/locus_tag="NAL212_0048"
/pseudo
/db_xref="GeneID:10299832"
gene complement(51650..52765)
/locus_tag="NAL212_0049"
/db_xref="GeneID:10299833"
CDS complement(51650..52765)
/locus_tag="NAL212_0049"
/inference="similar to AA sequence:KEGG:Nmul_B2812"
/note="KEGG: nmu:Nmul_B2812 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296159.1"
/db_xref="GI:325983758"
/db_xref="GeneID:10299833"
/translation="MSNTQIINSTIAHASVNKCAIFHTTRYKLVKKPPEKYIKSLQLD
LFSQFVTNDKSEVSNTVEIWESIPKYFFTPKQVEKLRTKTGHADPYKMEFSYDGISCS
VKIQPALIEQKDGGYKAFFPSVTEELVEEALKKYLTIQNYGIHDVNKAETWVRFSLSM
IHRELKSRGRTRSRNEIKHAIEVMNKCNISLFKDKKEVWSGAILQDLVTVGREEYLAD
TDAHHIGRLPLFISHAINRLEYRQFNYDRLMSCDEQLSRFIYKKLINRYRHANLINNY
HFMFSDLKNSGLLQQSREIDNRRKVLSALDELKEKNIIASYETDERKESRAITDVKYT
IFPSNQFISEQKAANKRVNDTEKQVIDTKSKSLDKFL"
gene complement(52808..53251)
/locus_tag="NAL212_0050"
/db_xref="GeneID:10299787"
CDS complement(52808..53251)
/locus_tag="NAL212_0050"
/inference="similar to AA sequence:KEGG:LLO_2896"
/note="KEGG: llo:LLO_2896 TraM protein"
/codon_start=1
/transl_table=11
/product="TraM protein"
/protein_id="YP_004296160.1"
/db_xref="GI:325983759"
/db_xref="GeneID:10299787"
/translation="MTTTELNHFSKIIERVAAKHGIALSDDDPILMIHTLNEILLEEN
SKAHQVLLNNFRSTLEENISQWSQATENKANSLLQASSRNTNLLTEQIINSCFESIDQ
KIESGFNEKIKEIATIVRNTRQAAIINLLATGLFFLTVLVMVLVF"
misc_feature complement(52850..53221)
/locus_tag="NAL212_0050"
/note="Transcriptional activator TraM; Region:
Activator-TraM; cl11943"
/db_xref="CDD:187153"
gene complement(53248..53979)
/locus_tag="NAL212_0051"
/db_xref="GeneID:10299788"
CDS complement(53248..53979)
/locus_tag="NAL212_0051"
/inference="protein motif:PFAM:PF01656"
/note="PFAM: Cobyrinic acid a,c-diamide synthase;
KEGG: reu:Reut_D6529 conjugal transfer protein TraL"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_004296161.1"
/db_xref="GI:325983760"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:10299788"
/translation="MAKIHMILQGKGGVGKSFIASTLAQHKLAKGKKLICVDTDPVNA
TFHGFKKLNVRKINVMSGDEIDPRKFDDLIELIAKSESDIIIDNGASTFVPMSHYLIS
NQIPALLPDMGHELVIHTVITGSQALLDTLTGFANLIESFPIDTLFVVWLNPYWGEIE
MDGKRFEEMKTYLDNKSRVSAIIRIPNYKADTFGKDLSEILQSKLTFSEALESKSLPI
MVRQRLNIIRKQLFTNIENVAAVLA"
misc_feature complement(53521..53967)
/locus_tag="NAL212_0051"
/note="The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible...; Region:
CooC; cd02034"
/db_xref="CDD:238991"
misc_feature complement(53929..53952)
/locus_tag="NAL212_0051"
/note="P-loop; other site"
/db_xref="CDD:238991"
gene complement(53979..54320)
/locus_tag="NAL212_0052"
/db_xref="GeneID:10299789"
CDS complement(53979..54320)
/locus_tag="NAL212_0052"
/inference="similar to AA sequence:KEGG:XfasM23_2251"
/note="KEGG: xfn:XfasM23_2251 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296162.1"
/db_xref="GI:325983761"
/db_xref="GeneID:10299789"
/translation="MNPSLSERISMREQKNPGRRNLYEPAFLALKTEISQALHDGWSM
RQIWSTLKDEKKIGCSYLWFRNLVKRHIFAKPDDLSARKKHRQPVSGVTVERENNGFN
YRSSIDKKELI"
gene 54690..55043
/locus_tag="NAL212_0053"
/db_xref="GeneID:10299790"
CDS 54690..55043
/locus_tag="NAL212_0053"
/inference="similar to AA sequence:KEGG:BCAL0172"
/note="KEGG: bcj:BCAL0172 conjugal transfer relaxosome
component TraJ"
/codon_start=1
/transl_table=11
/product="conjugal transfer relaxosome component TraJ"
/protein_id="YP_004296163.1"
/db_xref="GI:325983762"
/db_xref="GeneID:10299790"
/translation="MVQKRLLHFRVPVTLDEEQEIRTKARDTGLSVAKYMRQVSLGYF
VPSAIDNQQVEKLLRINGDLGRVGGLLKMWLTNDVRLKITSKAEIEATLVTIRTTQNA
MLDAILELRNRKTNT"
misc_feature 54699..55001
/locus_tag="NAL212_0053"
/note="conjugal transfer relaxosome component TraJ;
Provisional; Region: PRK13877"
/db_xref="CDD:184361"
gene 55059..56684
/locus_tag="NAL212_0054"
/db_xref="GeneID:10299791"
CDS 55059..56684
/locus_tag="NAL212_0054"
/inference="protein motif:PFAM:PF03432"
/note="PFAM: Endonuclease relaxase, MobA/VirD2;
KEGG: app:CAP2UW1_4640 conjugal transfer relaxase TraI"
/codon_start=1
/transl_table=11
/product="Relaxase/mobilization nuclease family protein"
/protein_id="YP_004296164.1"
/db_xref="GI:325983763"
/db_xref="InterPro:IPR005094"
/db_xref="GeneID:10299791"
/translation="MIAKIIPIKTVRKSNYSALIQYLTDPQDKSERISQIKVSNCYSD
DQTAALIEIQNTQEMNTRAKSDKTCHLVLSFPEGERLSLSDLNAIEERFCNGLGFTGH
QRFSVVHDDTNNLHIHVAINKIHPQNLTIHNPYYDFIKVAKLCEQIEQEYGLTTVNHE
TVKDQASRVAHEIETRTGVESLLGWINREALTEIKHAKNWQELHKVLAKHGLAIKERG
NGFVLVANNGVAVKVSSVDRSLSKGNLTQRLGAFIPNEHSDQSLRSDIKQYQPRPLQN
RIDTSKLYARYQQEQADSATQRTTQWIMLRQNRDRLIKRAKQEAKLKRNLIKSIKAGR
LAKKALYATAHQQFKTTIAVIKSDYQKSYQHSKTRHSRMGWLDWLAFEAKNGKTQALA
VLRSRRTGQFKGNQISAKQSHDGFSTDGHFKNNFVEAITKIGTVTYQVGTTTIRDDGK
RLIVLSDATQDALMDILQVAMKKYGSHLAINGTEQFRLQIAEVAAQNQMHITFDDKRL
EQYRQQLMKQHRKSRAQSAGGIRSTPSTPRRSL"
misc_feature 55059..>56645
/locus_tag="NAL212_0054"
/note="conjugal transfer relaxase TraI; Provisional;
Region: PRK13878"
/db_xref="CDD:237539"
misc_feature 55092..55814
/locus_tag="NAL212_0054"
/note="Relaxase/Mobilisation nuclease domain; Region:
Relaxase; pfam03432"
/db_xref="CDD:217554"
gene 56684..58552
/locus_tag="NAL212_0055"
/db_xref="GeneID:10299792"
CDS 56684..58552
/locus_tag="NAL212_0055"
/inference="protein motif:PFAM:PF02534"
/note="PFAM: Ti-type conjugative transfer system,
TraG-like;
KEGG: app:CAP2UW1_4641 conjugal transfer coupling protein
TraG"
/codon_start=1
/transl_table=11
/product="TRAG family protein"
/protein_id="YP_004296165.1"
/db_xref="GI:325983764"
/db_xref="InterPro:IPR003688"
/db_xref="GeneID:10299792"
/translation="MNKNSLLSQNNRNVKKDALIIRLLSVVCLIGGLQVATQYFAYKF
NYQPQLGAHFFHIYEPWAILVWAEKWYPQYSGIIDLAAGFGILFSSIGLILVLVIKMV
LANSSRTNQGLHGSAIWADKQDIVAAGLLSTGKNNHNDAVYVGGWQDNSGKTHYLKHS
GPEHVLCYAPTRSGKGVSLVIPTLLSWTQSAVITDLKGELWALTAGWRKHHAKNKVLR
FDPASTSSAHWNSLDEIQIGSGMEVADVQNLTTLIVDPDGKGLQTHWQKTSQALLVGV
ILHVLYKSQREGTPANLSTVDSMLSDPDRDIRELWMEMAMQDYLDGKSHPVIAASARD
MLDRPEEEAGSVLSTAKSYLSLYRDPIVASNISDSDFKIRDLMHHESPVSLYIVSHPN
DKSRLRPLIRILINMIVRKLADRITFKGGQPSIHYKHKLLLMLDEFPSLGKLEIFQES
LAFIAGYGIKAYLICQDLNQLKSRETGYGHDEAITSNCHIQTAFAPNRIETAEHLSKL
TGQTTVIKEQITTSGRRSSMMHGHVTRTLQETQRALLTPDECMRLPGPMKDAEGKITK
PGDMIIYVAGFPAIYGTQPLYFQDETFTARAQVNPPSFSDKLTALGNIPNTTKSLS"
misc_feature 56693..58507
/locus_tag="NAL212_0055"
/note="conjugal transfer coupling protein TraG;
Provisional; Region: PRK13880"
/db_xref="CDD:237540"
misc_feature 57173..58342
/locus_tag="NAL212_0055"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature order(57188..57193,57203..57211)
/locus_tag="NAL212_0055"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature order(57191..57193,57203..57211,57260..57262,57266..57271,
57989..57994)
/locus_tag="NAL212_0055"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature 57977..57991
/locus_tag="NAL212_0055"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene 58549..59088
/locus_tag="NAL212_0056"
/db_xref="GeneID:10299793"
CDS 58549..59088
/locus_tag="NAL212_0056"
/inference="protein motif:TFAM:TIGR02771"
/note="KEGG: bam:Bamb_6613 conjugal transfer peptidase
TraF;
TIGRFAM: Peptidase S26C, conjugative transfer signal
peptidase TraF;
PFAM: Peptidase S26, conserved region"
/codon_start=1
/transl_table=11
/product="conjugative transfer signal peptidase TraF"
/protein_id="YP_004296166.1"
/db_xref="GI:325983765"
/db_xref="InterPro:IPR014139"
/db_xref="InterPro:IPR019533"
/db_xref="GeneID:10299793"
/translation="MKKPIKILAVSVLAVSVSLFVLSIGFRISGIYINTTPSLPVGFY
KVVDEPILSGAYVAFCPQQDEVFDMARDRSYINQGDCPGGYGLLLKRVFALSGDTVSI
DQTGIFVNGEHLPNSAQLKTDAEGQPLPQYRLKAVLNDSEYLLLSDLNPQSFDARYFG
LIARSQIQQVVRPIFTWSH"
sig_peptide 58549..58620
/locus_tag="NAL212_0056"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.977) with cleavage site probability 0.677 at
residue 24"
misc_feature 58630..59082
/locus_tag="NAL212_0056"
/note="conjugal transfer pilin processing protease TraF;
Provisional; Region: PRK13838"
/db_xref="CDD:172365"
misc_feature 58645..59076
/locus_tag="NAL212_0056"
/note="Signal peptidase, peptidase S26; Region:
Peptidase_S26; pfam10502"
/db_xref="CDD:151062"
gene 59114..59332
/locus_tag="NAL212_0057"
/db_xref="GeneID:10299794"
CDS 59114..59332
/locus_tag="NAL212_0057"
/inference="similar to AA sequence:KEGG:XfasM23_2245"
/note="KEGG: xfn:XfasM23_2245 conjugal transfer protein"
/codon_start=1
/transl_table=11
/product="conjugal transfer protein"
/protein_id="YP_004296167.1"
/db_xref="GI:325983766"
/db_xref="GeneID:10299794"
/translation="MNRPPIDAETNNPDIQEVIKEKLLDAEIPGFQAEFDPLEAQMLG
ALTEDALSEQDALDSTIDHTAEVGYERG"
gene 59319..62231
/locus_tag="NAL212_0058"
/db_xref="GeneID:10299795"
CDS 59319..62231
/locus_tag="NAL212_0058"
/inference="protein motif:PFAM:PF08401"
/note="KEGG: app:CAP2UW1_4644 hypothetical protein;
PFAM: Domain of unknown function DUF1738; Toprim domain;
SMART: Toprim domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296168.1"
/db_xref="GI:325983767"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR013610"
/db_xref="GeneID:10299795"
/translation="MKEAKKAFHEQVAENLIEQLKKGVAPWQKPWKPGDLLAVLPVNP
TTGKRYRGINSLNLMSRAHTDPRWLTYKQAAALNAQVRKGEKSTLVQYWKFTEEHIKK
DDNGNPVLNSEGKPIKEQVRLERPRVFYASVFNAQQMDNLPELSIKAPDWDPLERAEH
ILQASNAVIRHGEADRAFYRPSTDSIHLPHKHQFPTPDRYYATALHELGHWTGHELRL
NRDLSHPFGSECYAKEELRAEIASMLLSGELGIGHDPGQHVAYVNSWIKALQEDPTEI
FRAAADAEKIQDYVLALSQQQEIGQKIAQEMDAQEAIKMDQIKQNTATYVQNPLPDLA
TIASHNIKLLNDLTQGMPIKDQDAIILVADALKFLRGGGIDNLEFEEVAEDKLGFRIP
ADWNGQLQIQGNVIQTDENGIESIVSADLQNREPQFWGVTMQRNDQTFQWVKDCESKQ
EARDLTNLLALIDVAAEQNEHEKATKLAHIHENRIRNDTLSAEEAALDAKVEQNAQIH
QNQQAQQTNRRASQQNDDNSRKYLFVPYIEKDLAKAAGARWDKKARAWYVGPEADIQT
LQRWLPENVSRQQEPAINPHIEFADLLRAQGCRVDGNHPVMDGSKHRIKVESDKSGEK
SGFYVAHLDGHPAGYFKNNRTGIETRWKAKGYSLTDEQKAELVLQAAIKQQNRKAGQQ
AQQIRVADALQELLAIAPIADSGHPYLMDKHARPGDLRIVPQNADDLPNDSIIRIGQK
WQEVKVLREEYPDSIVLTAGDLLLAAQDVHGQIWSVQTIQPSGAKLFAAGSRKENNFH
IVGNNGQGLEAAINTAPVIVIAEGYATADTLSQALDYPVIAAFDSGNLSKVAQDLHEK
YPHKPIIIAGDDDHHLESTLGKNPGKEKALEAASLVDGVAVFPVFAPGEQVSKRLNDF
NDLANKSVLGIDAVKRQVGSVVEKVSQQAKQASLLRLQTPIALKRQKIKQKRALVR"
misc_feature 59331..60233
/locus_tag="NAL212_0058"
/note="Antirestriction protein [DNA replication,
recombination, and repair]; Region: COG4227"
/db_xref="CDD:226680"
misc_feature 59331..59705
/locus_tag="NAL212_0058"
/note="Domain of unknown function (DUF1738); Region:
DUF1738; pfam08401"
/db_xref="CDD:219822"
misc_feature 61041..62156
/locus_tag="NAL212_0058"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4643"
/db_xref="CDD:226990"
misc_feature 61767..62021
/locus_tag="NAL212_0058"
/note="TOPRIM_primases: The topoisomerase-primase (TORPIM)
nucleotidyl transferase/hydrolase domain found in the
active site regions of bacterial DnaG-type primases and
their homologs. Primases synthesize RNA primers for the
initiation of DNA replication. DnaG...; Region:
TOPRIM_primases; cd01029"
/db_xref="CDD:173779"
misc_feature order(61779..61784,61791..61793,61917..61919,61923..61925,
61929..61931)
/locus_tag="NAL212_0058"
/note="active site"
/db_xref="CDD:173779"
misc_feature order(61779..61781,61917..61919)
/locus_tag="NAL212_0058"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173779"
misc_feature order(61785..61790,61806..61811,61839..61841)
/locus_tag="NAL212_0058"
/note="interdomain interaction site; other site"
/db_xref="CDD:173779"
gene 62365..62745
/locus_tag="NAL212_0059"
/db_xref="GeneID:10299796"
CDS 62365..62745
/locus_tag="NAL212_0059"
/inference="similar to AA sequence:KEGG:Veis_4707"
/note="KEGG: vei:Veis_4707 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296169.1"
/db_xref="GI:325983768"
/db_xref="GeneID:10299796"
/translation="MKIYKTRWFARWANKQGLTSPSLCAAVREMTEGLYDADLGNGLL
KKRIARPGQGKRSGFRTLVATNKGNRWIFLFGFPKNERSNIDKDEEVALKLLAAHLLS
LTAQALDQAQHAGELMEVNCDAQD"
misc_feature 62365..62724
/locus_tag="NAL212_0059"
/note="Protein of unknown function (DUF1044); Region:
DUF1044; pfam06296"
/db_xref="CDD:148105"
gene 62732..63046
/locus_tag="NAL212_0060"
/db_xref="GeneID:10299797"
CDS 62732..63046
/locus_tag="NAL212_0060"
/inference="protein motif:PFAM:PF01381"
/note="KEGG: ana:all1719 hypothetical protein;
PFAM: Helix-turn-helix type 3;
SMART: Helix-turn-helix type 3"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_004296170.1"
/db_xref="GI:325983769"
/db_xref="GO:0043565"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:10299797"
/translation="MRKTKSTILEAVHDTAKGLHKAGVLDQVTLREFDRLCLPPIEPL
EPEQIKQIREATRVSQAVFAAILNTSVSTVQKWEIGQKRPTGTALKLLHLVQKRGLEA
VV"
misc_feature 62732..63040
/locus_tag="NAL212_0060"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG2944"
/db_xref="CDD:225495"
misc_feature 62873..>63007
/locus_tag="NAL212_0060"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(62879..62881,62891..62893,62966..62968)
/locus_tag="NAL212_0060"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(62888..62890,62963..62965)
/locus_tag="NAL212_0060"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(62909..62914,62945..62947,62954..62956,62966..62971)
/locus_tag="NAL212_0060"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 63103..63408
/locus_tag="NAL212_0061"
/db_xref="GeneID:10299798"
CDS 63103..63408
/locus_tag="NAL212_0061"
/inference="similar to AA sequence:KEGG:Mfla_0534"
/note="KEGG: mfa:Mfla_0534 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296171.1"
/db_xref="GI:325983770"
/db_xref="GeneID:10299798"
/translation="MCGGIEYQDQKIYFPQPDARLPARLRDGNVTWVTWGRRKDEATG
KFPNGGWARLASIKSGKWKPWHPRPVLIAADQFMEKDHGNQSHWVKLDKRMVIQGLL"
gene complement(63429..65012)
/locus_tag="NAL212_0062"
/db_xref="GeneID:10299799"
CDS complement(63429..65012)
/locus_tag="NAL212_0062"
/inference="protein motif:PFAM:PF03050"
/note="PFAM: Transposase, IS66;
KEGG: gca:Galf_2413 transposase"
/codon_start=1
/transl_table=11
/product="transposase IS66"
/protein_id="YP_004296172.1"
/db_xref="GI:325983771"
/db_xref="InterPro:IPR004291"
/db_xref="GeneID:10299799"
/translation="MTTMKPLAQLDQLNLDAHTKQQVTGIVQALLDQAQQAIRVQELK
IQALTMELAHLRRIQFGKKNESLSSQPNLFEESVLADIAAVHAEIEQIDVTVKTNAPK
SPRVRAGRQPLPDHLPRIEHRHEPESCQCGQCGNKLVKIGEDVTEQLDVEPARFFVHR
HIRPQYACKSCETITAEPVPPAIIDSGMAAPGLLAWVITSKYLNHLPLYRLEQIAARE
QVTLSRSTLAEWVGRIGVALQPLTEQLKWHLLQGNTLHADETPVTQLEPGNGKTQRAY
LWAYRSNDLDPGPRIVVFDYQISRSGQHARNFLQNWQGHLLVDDYGGYKALFSRAALS
CTELACWAHARRKFFDLHQANGSSMAFEALQRIANLYAIEKESKHLNIELRQQLRAEK
SLPVLDELHDWLRQTRMQTAHGGASAKALDYALKRWPSLVRYAHTGYLPIDNNPVENS
IRPIAIGKKNWLFTGSQRAGQRAANIQTLLGTAQLNGLNPGAWLNDILTKLPTWPNSR
IDELLPFAPEFIQSLKLKQ"
misc_feature complement(64647..64877)
/locus_tag="NAL212_0062"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:221891"
misc_feature complement(64227..64703)
/locus_tag="NAL212_0062"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3436"
/db_xref="CDD:225970"
misc_feature complement(64473..64643)
/locus_tag="NAL212_0062"
/note="putative Helix-turn-helix domain of transposase
IS66; Region: HTH_Tnp_IS66; pfam13005"
/db_xref="CDD:221890"
misc_feature complement(63597..64454)
/locus_tag="NAL212_0062"
/note="Transposase IS66 family; Region: DDE_Tnp_IS66;
pfam03050"
/db_xref="CDD:217337"
misc_feature complement(63465..63581)
/locus_tag="NAL212_0062"
/note="IS66 C-terminal element; Region: DDE_Tnp_IS66_C;
pfam13817"
/db_xref="CDD:205990"
gene complement(65066..65416)
/locus_tag="NAL212_0063"
/db_xref="GeneID:10299800"
CDS complement(65066..65416)
/locus_tag="NAL212_0063"
/inference="protein motif:PFAM:PF05717"
/note="KEGG: eba:ebB55 transposase, fragment;
manually curated;
PFAM: Transposase (putative), IS66 Orf2-like"
/codon_start=1
/transl_table=11
/product="IS66 Orf2 family protein"
/protein_id="YP_004296173.1"
/db_xref="GI:325983772"
/db_xref="InterPro:IPR008878"
/db_xref="GeneID:10299800"
/translation="MSGLIAPVGQIWMVVEPVDMRRGIDGLSLIVQQTLGHSPCAGSA
FVFCNRTRNRMKVLLWDGTGVWLCHRRLHQGRFVWPKLEEGCFELTQSYWEWLIAGVD
WQRLSALPPAHLQA"
misc_feature complement(65081..65398)
/locus_tag="NAL212_0063"
/note="IS66 Orf2 like protein; Region: TnpB_IS66;
pfam05717"
/db_xref="CDD:191353"
misc_feature complement(65102..>65389)
/locus_tag="NAL212_0063"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3436"
/db_xref="CDD:225970"
gene complement(65404..65700)
/locus_tag="NAL212_0064"
/db_xref="GeneID:10299801"
CDS complement(65404..65700)
/locus_tag="NAL212_0064"
/inference="similar to AA sequence:KEGG:HRM2_44620"
/note="KEGG: dat:HRM2_44620 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296174.1"
/db_xref="GI:325983773"
/db_xref="GeneID:10299801"
/translation="MTSRERQGGHIKAWEASGLSQAAYCRDHGLNSKTFGNWLRTYRD
VQKHNQPISLIPAKITPVASVSGYLKLRCSGGHTLELSTNVSPQWLGELLKCLD"
gene complement(65985..69602)
/locus_tag="NAL212_0065"
/db_xref="GeneID:10299802"
CDS complement(65985..69602)
/locus_tag="NAL212_0065"
/inference="protein motif:PFAM:PF00270"
/note="KEGG: ret:RHE_PF00102 putative DNA helicase
protein;
PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal;
Helicase, C-terminal;
SMART: DEAD-like helicase, N-terminal; Helicase,
C-terminal"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase domain-containing
protein"
/protein_id="YP_004296175.1"
/db_xref="GI:325983774"
/db_xref="GO:0003676"
/db_xref="GO:0004386"
/db_xref="GO:0005524"
/db_xref="GO:0008026"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="GeneID:10299802"
/translation="MPRLDENRLEVAKSIQAKLAQENLLTPSQARSFVRCLQMTWDVE
IIRWEDQDSSMQLSSAYNLIHVAGIFKDVEGVNSFNSVQCYRRAAEQLEWLTRADDKL
KNEVPISLLAGAAYQLGSLPAMAKGLLKQIQSDDAGWRLFCLFLQADFDGVIETALTF
WKRSPELTEKKASSQILNGDEEDAVSWYVTVELIRTIGLIAFSLRSGHQGRLEKALEK
LNAIQRMATRNLNSEMSLLITMLSEVANEFNNASIYKSINKLAKLDPTKTSKLNTLAR
RQYHIGRGVLWPSQLAGIERLLEQSSFALCTPTGSGKTLVANLALIKELLLMDGDPLI
APLAIYLVPSRALAGEVESKLNREMGNEFIITGLYGGNDWGVTDYWLNADRPTVLIAT
VEKADALMRYLNPIIIPRLKLIIIDEAHQIVPDDPTYAAKNFAKHSDRSIRLESFVSR
ILVQSPNIARMALTAVAGGAAGPVARWIESREDAHPVGLNYRSTRQVIGILETRSGSA
PKLNLDFMNGAPLSVVGRDDSPYLNLRIQAMPQLPVIMRNSLNRYNQLEILWTAMHFR
RGGRRILISLTQVPEQTMKWYCEVLSLKAWAEITTFEPPKKNNLHEFFDETMATCVDY
CGENSYEVKLLKFGIATNHGQMPQRLRLLMTNLIERGICSITIATATLTEGVNLPFDI
IFLPQLRRQSFDPDKEILVNVPLSTSEFRNLSGRAGRPGAARSMEGLTLIALPQVPST
TANGTKNIQIRQIRDLKKDYINLRERLVAEEKVSGAINSPLALLIHTLFLKARASGLV
EDEGGFLDWLDRISPSDISDNAATGHRSETAQLADTLDELDGLLLSAIEEIHRMDMGE
IDVKNIEESLKGLWAKTFSAYAAVQELWMENAFIKRGKAIIETIYPDPDERKRLYQYG
FPPYLGRRFEGIFDPIKETIMTANRYGAFSIQKRCDIFEALAELISDDRGYGFSVRES
EVAKKVLNNWRTVLNWWLNNSEVDGPQPDELREWQRFVSENLEFRLGVIVGAVIARSW
ADGANELLAIPSLEEWKKTTGLPWFGFWIRELLRWGTHDPFVAFALSQGIAKTRPFAL
SRKSEFLEWLENNYEELDEEDLIDPQLFLQWQKSLPKRKRPEPKKTIYQAELTGTDGK
LGQYNVVPVHNEGIVIWLDPAGYELARSNVAEGNDHVFSHKSDFKMTIANGSVTVTKI
F"
misc_feature complement(<68337..68690)
/locus_tag="NAL212_0065"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature complement(68661..68675)
/locus_tag="NAL212_0065"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature complement(68343..68354)
/locus_tag="NAL212_0065"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature complement(67440..67706)
/locus_tag="NAL212_0065"
/note="helicase superfamily c-terminal domain; Region:
HELICc; smart00490"
/db_xref="CDD:197757"
misc_feature complement(order(67590..67598,67671..67676))
/locus_tag="NAL212_0065"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature complement(order(67446..67448,67455..67457,67467..67469,
67572..67574))
/locus_tag="NAL212_0065"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
gene complement(69605..70549)
/locus_tag="NAL212_0066"
/db_xref="GeneID:10299803"
CDS complement(69605..70549)
/locus_tag="NAL212_0066"
/inference="similar to AA sequence:KEGG:RHE_PF00101"
/note="KEGG: ret:RHE_PF00101 putative aminotransferase
protein"
/codon_start=1
/transl_table=11
/product="putative aminotransferase protein"
/protein_id="YP_004296176.1"
/db_xref="GI:325983775"
/db_xref="GeneID:10299803"
/translation="MTLHTCSPPVLYEWLKEYPSVVKNYGHLLLEQKKAKDDELLAVL
KPYFESAHMDARKVFHEFIGIDLHPDSAAGSVDISYPSSLHLTTLKGFFGEVLTGLIV
EAYDLVGEHDWKVPVFLFRFHEDAKKYLYTLVRDPDQKRQTIGRLGTDFIAISLNKNG
EIDCLISGEAKWRKTLYSSEVDNLMLGKKEKGQQSRQTEKGIWAKLNKEVNPPNGLRE
LQIILKDLDHNGYAETILSMDKLLSAYNAHAVPKTDLVVIVGEGSATREEGSRLIGHE
GIPEAYLAGNNLQVVEVILNEGEQLIEELYRCLWKDED"
gene complement(70864..71145)
/locus_tag="NAL212_0067"
/db_xref="GeneID:10299804"
CDS complement(70864..71145)
/locus_tag="NAL212_0067"
/inference="protein motif:PFAM:PF00216"
/note="KEGG: cpc:Cpar_1878 histone family protein
DNA-binding protein;
PFAM: Histone-like bacterial DNA-binding protein;
SMART: Histone-like bacterial DNA-binding protein"
/codon_start=1
/transl_table=11
/product="histone family protein DNA-binding protein"
/protein_id="YP_004296177.1"
/db_xref="GI:325983776"
/db_xref="GO:0003677"
/db_xref="InterPro:IPR000119"
/db_xref="GeneID:10299804"
/translation="MNKTELIEAVATRSQTTKTQTTALLNGLLEVIQETIASGNDVQL
VGFGTFSVTERTSREGRNPATGETITIPAKKVVKFKPGKALSDAAACVK"
misc_feature complement(70882..71142)
/locus_tag="NAL212_0067"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature complement(order(70882..70884,70903..70905,70909..70911,
70921..70926,70990..70992,71005..71010,71017..71031,
71041..71046,71053..71058,71065..71067,71107..71109,
71119..71121,71128..71130,71137..71142))
/locus_tag="NAL212_0067"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
misc_feature complement(order(70897..70899,70906..70908,70912..70914,
70924..70926,70954..70965,70972..70974,70978..70983,
70987..70989,70999..71001,71008..71013,71017..71019,
71023..71025,71068..71070,71134..71142))
/locus_tag="NAL212_0067"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
gene 71356..71820
/locus_tag="NAL212_0068"
/db_xref="GeneID:10299805"
CDS 71356..71820
/locus_tag="NAL212_0068"
/inference="similar to AA sequence:KEGG:Neut_2558"
/note="KEGG: net:Neut_2558 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296178.1"
/db_xref="GI:325983777"
/db_xref="GeneID:10299805"
/translation="MWPRFFVTIILFASLPANATTVYDRIAQGMTPNSITLIGESHQR
PESIVFFESLITHYLQQNKCLTVMLEISSGQQSLIDEIQQGQATVANMKIASPIDHPP
LRKLIQDLAEMRINGKCLKLVAVDADFKPGVERDQWIAKKLIKLSGDAPVLA"
sig_peptide 71356..71415
/locus_tag="NAL212_0068"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.999) with cleavage site probability 0.999 at
residue 20"
gene 72507..73718
/locus_tag="NAL212_0069"
/db_xref="GeneID:10299806"
CDS 72507..73718
/locus_tag="NAL212_0069"
/inference="protein motif:PFAM:PF03235"
/note="PFAM: Domain of unknown function DUF262;
KEGG: swd:Swoo_0706 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296179.1"
/db_xref="GI:325983778"
/db_xref="InterPro:IPR004919"
/db_xref="GeneID:10299806"
/translation="MSVEKQITESEDTFEGEETLGAEFREASLSQEDGTTSIYPDAIV
NIAPESASVFQLKRKLDKIPPLIKLDPDFQRHTVWSQKQKSELIESILMGIPLPLIYV
KEDDRGVYIIVDGRQRLTTLFQFMNHEFPLQNLNVLIDLNGAYFSETSKIGDSFGKYL
TQVQQSKIEDCPLTLHVIKPPTQDRVTFDLFDRVNRGGTRLNNQEMRNAIYQGAATKL
LNTLVAFDSFKKATENSIKPDRMKDKYLVLRMIGFYLWRKKRLLSVKEKGMPLVEYRS
DLEDFLGKTMMFLNDQAGNALCTEFPVLFDHTMKVCGTVLGSGCFRLPKKGDGPRRPI
SMALFETVSYLIIELIDVPEKHEKIKNELGKLLSDDKFIENTTYIVDSNISVNGRFKI
VETIIQEIRNA"
misc_feature 72651..>73007
/locus_tag="NAL212_0069"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1479"
/db_xref="CDD:224396"
misc_feature 72711..>72881
/locus_tag="NAL212_0069"
/note="Protein of unknown function DUF262; Region: DUF262;
pfam03235"
/db_xref="CDD:217444"
gene 73711..74775
/locus_tag="NAL212_0070"
/db_xref="GeneID:10299807"
CDS 73711..74775
/locus_tag="NAL212_0070"
/inference="protein motif:PFAM:PF12476"
/note="PFAM: Domain of unknown function DUF3696,
C-terminal;
KEGG: vex:VEA_001831 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296180.1"
/db_xref="GI:325983779"
/db_xref="InterPro:IPR022532"
/db_xref="GeneID:10299807"
/translation="MLEALHIEGFKCFDSVKISLRRINIFSGTNSSGKSSAIQAFLLL
CNNAVKNSSSPLNGVWLRLGTFDECRNHQTNARIFRVGAVSGTETFQAEFYSVNDDPN
DVAVLFTNESATIENLISIEERHVYYLPANRIGPEDSYPRNFDRVNFLGNKAEFIVDF
LYKNRKKEVASSLIADTASVTLEYQVNYWLGKLFGIKNTIRDLGLSNSLSVELSLENG
KSVRPYHMGSGVSFAIGVLVSCLSASPDDIVVIENPEIHLHPKAQSDLTEFLCFVANA
GIQVILETHSDHVFNGIRKSIAKNEIANTDVVVHFFQLDENALSKNSVISLNEHGRIM
THIKGLFDQFDDDLDQILGL"
misc_feature 73711..74703
/locus_tag="NAL212_0070"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG4938"
/db_xref="CDD:227274"
gene 74777..75613
/locus_tag="NAL212_0071"
/db_xref="GeneID:10299808"
CDS 74777..75613
/locus_tag="NAL212_0071"
/inference="similar to AA sequence:KEGG:BF1768"
/note="KEGG: bfr:BF1768 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296181.1"
/db_xref="GI:325983780"
/db_xref="GeneID:10299808"
/translation="MQVLLNELSLTGQFSDQDAFIRNGLYPFVGVLKEMQEFPTLLLK
KSDVWERMITPTVTLHALLNNNSFRKSDEVRRLKTTIDHLTKEPFWDSDSKQNGNTTY
LLDENNIWGSSPAEACERDKILISFVSSSVSLDPLNIMRNGIDESLLNLTCAGKFTEF
LWNKNKISFESYLKARFSRSKLDFSRVDDKIGFSRIQTAEQSLFLDTFRKFEELSWDQ
IHTDNGLDYKEYHETINVLCQGKKTYKFRASKKFRCHGYRNKDSFVVIGFETDHKLSD
RG"
gene complement(75665..76855)
/locus_tag="NAL212_0072"
/db_xref="GeneID:10299809"
CDS complement(75665..76855)
/locus_tag="NAL212_0072"
/inference="protein motif:PFAM:PF10544"
/note="KEGG: gbe:GbCGDNIH1_1519 putative cytoplasmic
protein;
PFAM: Bacteriophage T5, ORF172 DNA-binding;
SMART: Bacteriophage T5, ORF172 DNA-binding"
/codon_start=1
/transl_table=11
/product="helicase A859L"
/protein_id="YP_004296182.1"
/db_xref="GI:325983781"
/db_xref="InterPro:IPR018306"
/db_xref="GeneID:10299809"
/translation="MAKAMFTDEDNALLAELGVEVEVKNTGSRTPREERIIAGFEDIE
RFFEQHGRVPAHGEDRDIFERLYAVRLDKIRASEECRAVLADQDKHGLLTGESTAVVN
ELDDLDDDTLLSELGVLDAGKNDITRLMHVKSRAEIKAAEEIAKRTPCLDFDKFKPLF
IKVQEELAIGIRLTRKFKDDAQIRQGDFFILGGQKVYVAETGVEFIAEYGRPDRRLRV
IYDNGTESDILMRSLQRALNKDETGRRIIECSAGPLFSDVIEEGDVEAGTIYVLRSKS
DHPLIKEHRDVIHKIGVTSGNIERRIGNAKLDPTFLMADVEIVATYELSNINRTKLEN
LIHRFFEPVKLDIEIMDRFGNPVVPREWFLVPLFVIDETIEKIRDRSIVNYRYDPNLG
KIIE"
misc_feature complement(75722..76057)
/locus_tag="NAL212_0072"
/note="T5orf172 domain; Region: T5orf172; pfam10544"
/db_xref="CDD:220802"
gene complement(76848..78899)
/locus_tag="NAL212_0073"
/db_xref="GeneID:10299810"
CDS complement(76848..78899)
/locus_tag="NAL212_0073"
/inference="protein motif:PFAM:PF00271"
/note="PFAM: Helicase, C-terminal;
KEGG: ajs:Ajs_2529 hypothetical protein"
/codon_start=1
/transl_table=11
/product="helicase domain-containing protein"
/protein_id="YP_004296183.1"
/db_xref="GI:325983782"
/db_xref="GO:0003676"
/db_xref="GO:0004386"
/db_xref="GO:0005524"
/db_xref="InterPro:IPR001650"
/db_xref="GeneID:10299810"
/translation="MTNIKSIPSVSVNYACNGSSTKANEMGMRAMQERAYEKRGEQYL
LIKSPPASGKSRALMFIALDKLHNQGLKKAIIVVPEKTIGSSFNNEPLTHYGFWVDWE
VAPQWNLCNAPGDDNGGKVGAVRAFIDSSDCALVCTHATFRFAVDRFGVAAFDDCLIA
VDEFHHVSANPDNKLGAYLGQFIGRDKAHIVALTGSYFRGDAEAVLAPQDEAKFETVT
YTYYEQLNGYQYLKQLDIGYYFYSGSYTDEILSVLNPEEKTIIHIPNVNSRESTKDKI
KEVEHIIHELGEWKGIDEKTGFHVVKTPKGKVLRIADLVDDDAKRDKVLSSLRDPAEK
FNREHVDIIIALGMAKEGFDWIWCEHALTVGYRSSLTEIIQIIGRATRDAKGKTKSRF
TNLIAEPDASEEAVTDAVNDTLKAIAASLLMEQVLAPKFNFSLKNSESGPVDGFDYGE
GGYDSRKENIGFNEQTGQFQIEIKGLAEPKSKEATRICQEDLNEVIAAFVQDKTSLER
GLFDSEMVPEELTQVRMGKIVKDKYPELDQEDQEAVRQHAIAALNLTQQAKKILNSTE
DTQKAGNTALIDGVRKFAMDVRDLDIDLIDRINPFGEAYAILAKAMNEDSLKQVAAVI
AGKKVNLTIEEARELAKRALKFKQERGRLPSLTSQDPWEKRMAEGVAFLARMKAEAAN
G"
misc_feature complement(<78651..78827)
/locus_tag="NAL212_0073"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cl17251"
/db_xref="CDD:247805"
misc_feature complement(77727..78815)
/locus_tag="NAL212_0073"
/note="DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair]; Region: SSL2; COG1061"
/db_xref="CDD:223989"
misc_feature complement(76935..77021)
/locus_tag="NAL212_0073"
/note="Pseudomurein-binding repeat; Region: PMBR;
pfam09373"
/db_xref="CDD:117915"
gene complement(78896..81673)
/locus_tag="NAL212_0074"
/db_xref="GeneID:10299811"
CDS complement(78896..81673)
/locus_tag="NAL212_0074"
/inference="similar to AA sequence:KEGG:Tint_1545"
/note="KEGG: tin:Tint_1545 putative DNA methylase"
/codon_start=1
/transl_table=11
/product="putative DNA methylase"
/protein_id="YP_004296184.1"
/db_xref="GI:325983783"
/db_xref="GeneID:10299811"
/translation="MNAVEIEEAISKLAEQPFDPAQFPYAFLEAFGNKATTISRLKSG
NSNKTDIEGAVLQNNNIHMAVCPSGEVLKTLENLKNSPATPRQKAKFILATDGDDFQA
EDLTSGVTVACTYRDFPNHFGFFLPLAGISTVKQISENAFDIRATGRLNKLYVELLKD
NPEWGAVERRPDMNHFMARLIFCFFAEDTDIFNGTVLFTSTIEQMSAKDSSNTHEVIS
EIFRAMNTKIEDRAAAKFHSWANTFPYVNGGLFSGSTETPRFSKIARSYLLHVGNLDW
KKINPDIFGSMIQAVAEDEERGALGMHYTSVPNILKVLNPLFLDDLRTKLEEASNNSR
MLLNLRKRMARIRVFDPACGSGNFLVIAYKEMRAIEAEINKRRGEADLPSEIPLTNFR
GIELRDFPAEIARLALIIAEYQCDVLYRGQKLALIEFLPLDTQNWITCGNALRLDWLS
ICPPTGTGVKLYSDDLFNTPLEQAQIDFENEGGETYICGNPPYVGSAKQSAEQKSEVG
SVFEAHTSTWRSLDLVACWFKLASDYFQHTSGSFAFVSTNSICQGEQVPILWPMIYKV
GLDIIFAHLSFKWSNLAAHNAGVTVIIVGVARDSSRKHLYSINSIEQTEIREVSNINA
YLIASNRIIVEPVSRASDGRGYMIRGNMPTDGGYLFLNETEKNELENQSPSSSRFIKK
FIGAQELINGLSRYCIWIEDHEVSSALDIPQIKERVEYVRQMRLESKATTTRDYARFA
YKFRQIQGICKESSIVIPRVSSENREYLPVDFYDSDTIIGDRNFAMCDVPLWNMALIA
SRLHWVWIGTVCVRMRTDFSYSNTLGWNTFPVPPLTEKNKTDLTHCAEDILLAREVHF
PATIADLYDPENMPENLRHAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTVKQ
DAASKTKKVVS"
misc_feature complement(<80534..80635)
/locus_tag="NAL212_0074"
/note="Methyltransferase domain; Region: Methyltransf_26;
pfam13659"
/db_xref="CDD:222295"
gene complement(81714..82172)
/locus_tag="NAL212_0075"
/db_xref="GeneID:10299812"
CDS complement(81714..82172)
/locus_tag="NAL212_0075"
/inference="protein motif:PFAM:PF08939"
/note="PFAM: Protein of unknown function DUF1917;
KEGG: mem:Memar_2250 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296185.1"
/db_xref="GI:325983784"
/db_xref="InterPro:IPR015034"
/db_xref="GeneID:10299812"
/translation="MTNKKLVGAKKDFEADVVQSVDEGNPSEVTHAAFIVANYRGESL
QPESKRVGKWLFFVAEKYIDDTWRNVKKAVEDGKLWKQAKVSTAWRSKGGVYVICVYT
YDCDDENDVMKIRDHLREMGFKRATSYKSDEQTLAGIYSDLSAGFALYKA"
misc_feature complement(81759..>82019)
/locus_tag="NAL212_0075"
/note="Domain of unknown function (DUF1917); Region:
DUF1917; pfam08939"
/db_xref="CDD:220078"
gene complement(82373..82714)
/locus_tag="NAL212_0076"
/db_xref="GeneID:10299813"
CDS complement(82373..82714)
/locus_tag="NAL212_0076"
/inference="protein motif:PFAM:PF02452"
/note="PFAM: PemK-like protein;
KEGG: neu:NE1181 PemK-like protein"
/codon_start=1
/transl_table=11
/product="transcriptional modulator of MazE/toxin MazF"
/protein_id="YP_004296186.1"
/db_xref="GI:325983785"
/db_xref="GO:0003677"
/db_xref="InterPro:IPR003477"
/db_xref="GeneID:10299813"
/translation="MTEFKQLDIYWVDLEPTKGTETKKLRPCVIVQSDLVNIQSKTLV
VAPMLPNHKSWPFAVNLTPTNNNGLDKDRHINLKQLRAIDISRIGKKQGRLESEYLQS
IKQALAIVFDL"
misc_feature complement(82382..82693)
/locus_tag="NAL212_0076"
/note="PemK-like protein; Region: PemK; pfam02452"
/db_xref="CDD:217045"
gene complement(82707..82937)
/locus_tag="NAL212_0077"
/db_xref="GeneID:10299814"
CDS complement(82707..82937)
/locus_tag="NAL212_0077"
/inference="similar to AA sequence:KEGG:NE1182"
/note="KEGG: neu:NE1182 CopG family protein"
/codon_start=1
/transl_table=11
/product="CopG family protein"
/protein_id="YP_004296187.1"
/db_xref="GI:325983786"
/db_xref="GeneID:10299814"
/translation="MTHRTTITLDDESFSFLNNIAGDNRSAYINELLKQERKNYLKQA
LFKANQEEAQDSDYQKELKEWDTTLSDGLPND"
misc_feature complement(82821..82928)
/locus_tag="NAL212_0077"
/note="Ribbon-helix-helix protein, copG family; Region:
RHH_1; pfam01402"
/db_xref="CDD:201775"
gene 83180..83476
/locus_tag="NAL212_0078"
/db_xref="GeneID:10299815"
CDS 83180..83476
/locus_tag="NAL212_0078"
/inference="protein motif:TFAM:TIGR02606"
/note="KEGG: dat:HRM2_09780 hypothetical protein;
TIGRFAM: Putative addiction module antidote protein,
CC2985;
PFAM: Uncharacterised protein family UPF0156/MetJ /Arc
repressor"
/codon_start=1
/transl_table=11
/product="addiction module antidote protein"
/protein_id="YP_004296188.1"
/db_xref="GI:325983787"
/db_xref="InterPro:IPR005360"
/db_xref="InterPro:IPR022789"
/db_xref="GeneID:10299815"
/translation="MKLSDKAEKISITLPPDMLNIIREKVKDGAYASTSEVIRAAMRL
WQRQEEEHHARIAAIRARLEQSAHSGEPVLLDAAFEKLEQLHQQRISASGHEKL"
misc_feature 83195..>83317
/locus_tag="NAL212_0078"
/note="Predicted transcriptional regulators containing the
CopG/Arc/MetJ DNA-binding domain [Transcription]; Region:
COG3609"
/db_xref="CDD:226136"
gene 83463..83810
/locus_tag="NAL212_0079"
/db_xref="GeneID:10299816"
CDS 83463..83810
/locus_tag="NAL212_0079"
/inference="protein motif:PFAM:PF05016"
/note="PFAM: Plasmid stabilisation system;
KEGG: dat:HRM2_09770 hypothetical protein"
/codon_start=1
/transl_table=11
/product="plasmid stabilization system"
/protein_id="YP_004296189.1"
/db_xref="GI:325983788"
/db_xref="InterPro:IPR007712"
/db_xref="GeneID:10299816"
/translation="MKSYEVYLTPDAIKDLTDIYEYITEKSGLPEVAWAYIEKLRQSC
HGLRMAPLIGQQRNDLRKNLRIIAIDKNAIAAFEVIEDKKIVTILNIFYGGRDYEAIM
GSETSHKNDELDK"
misc_feature 83463..83771
/locus_tag="NAL212_0079"
/note="Plasmid stabilization system protein [General
function prediction only]; Region: ParE; COG3668"
/db_xref="CDD:226194"
gene 83812..84762
/locus_tag="NAL212_0080"
/db_xref="GeneID:10299817"
CDS 83812..84762
/locus_tag="NAL212_0080"
/inference="protein motif:PFAM:PF00589"
/note="PFAM: Integrase, catalytic core, phage; Integrase,
N-terminal SAM-like, phage;
KEGG: app:CAP2UW1_4555 integrase family protein"
/codon_start=1
/transl_table=11
/product="integrase family protein"
/protein_id="YP_004296190.1"
/db_xref="GI:325983789"
/db_xref="GO:0003677"
/db_xref="InterPro:IPR002104"
/db_xref="InterPro:IPR004107"
/db_xref="GeneID:10299817"
/translation="MTNLIITSNRALTAKEFQGLADVPPEVEWFANLGNKATRRAYEN
ALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLVNRSLSSMSIRHRLSALSSLFEYLCE
RNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARELLEVPDGSSLKGKRDRAILATLLY
HALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAASGLIHDYLDAAGHD
HEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALD
HQADIAKVQEWLGHANIATTRIYDHRRTRPEDSPTFKVVY"
misc_feature 83872..84714
/locus_tag="NAL212_0080"
/note="site-specific tyrosine recombinase XerC; Reviewed;
Region: xerC; PRK00236"
/db_xref="CDD:234698"
misc_feature 83923..84714
/locus_tag="NAL212_0080"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature order(84301..84306,84382..84384,84595..84603,84706..84708)
/locus_tag="NAL212_0080"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature order(84301..84303,84382..84384,84601..84603,84610..84612,
84679..84681,84706..84708)
/locus_tag="NAL212_0080"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature order(84301..84303,84601..84603,84610..84612,84679..84681,
84706..84708)
/locus_tag="NAL212_0080"
/note="active site"
/db_xref="CDD:238231"
gene complement(85148..86434)
/locus_tag="NAL212_0081"
/db_xref="GeneID:10299818"
CDS complement(85148..86434)
/locus_tag="NAL212_0081"
/inference="protein motif:TFAM:TIGR00935"
/note="KEGG: dia:Dtpsy_2137 arsenical pump membrane
protein;
TIGRFAM: Arsenical pump membrane protein;
PFAM: Arsenical pump membrane protein"
/codon_start=1
/transl_table=11
/product="arsenical pump membrane protein"
/protein_id="YP_004296191.1"
/db_xref="GI:325983790"
/db_xref="GO:0015105"
/db_xref="InterPro:IPR000802"
/db_xref="GeneID:10299818"
/translation="MLIAILIFIFTLVLVIWQPRGLGIGWSALIGAAIAMILGVINLS
DIPVVWNIVWNATAAFIAIIIISLLLDEAGFFEWAALHVGRWGSGNGHLLFAFIVLLG
AAVSALFANDGAALILTPIVMAMLLALGFSPAATLAFVMAAGFIADTASLPFMVSNLV
NIVSADFFKIGFAEYAAVMIPVNIVSVVGSLGVLYLCFRHSIPAHYDVSKLKAPSEAI
RDLATFRAGWVVLVLLLIGFFGLEPFGVPISIVAVIGSLILLAVAAHSHIISTRKVIR
EAPWQIVIFSLGMYLVVYGLKNEGLTGYISSLLDNFSNYGLWGATLGTGFLAAFLSSI
MNNMPTVLIGALSVDAASATGAIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLAR
KNMVITWRYYFTVGIVLTVPVLLLTLSSLTMWLSIK"
misc_feature complement(85214..86386)
/locus_tag="NAL212_0081"
/note="Anion permease ArsB. These permeases have been
shown to export arsenate and antimonite in eubacteria and
archaea. A typical ArsB permease contains 8-13
transmembrane helices and can function either
independently as a chemiosmotic transporter or as a...;
Region: ArsB_permease; cd01118"
/db_xref="CDD:238538"
misc_feature complement(85214..86386)
/locus_tag="NAL212_0081"
/note="arsenical pump membrane protein; Provisional;
Region: PRK15445"
/db_xref="CDD:185342"
misc_feature complement(order(85214..85216,85292..85351,85430..85477,
85547..85603,85646..85690,85721..85759,85847..85891,
85955..86026,86045..86098,86102..86152,86222..86275,
86324..86365,86384..86386))
/locus_tag="NAL212_0081"
/note="transmembrane helices; other site"
/db_xref="CDD:238538"
gene complement(86493..86975)
/locus_tag="NAL212_0082"
/db_xref="GeneID:10299819"
CDS complement(86493..86975)
/locus_tag="NAL212_0082"
/inference="protein motif:PFAM:PF01451"
/note="KEGG: psa:PST_0240 arsenate reductase;
PFAM: Protein-tyrosine phosphatase, low molecular weight;
SMART: Protein-tyrosine phosphatase, low molecular weight"
/codon_start=1
/transl_table=11
/product="protein tyrosine phosphatase"
/protein_id="YP_004296192.1"
/db_xref="GI:325983791"
/db_xref="GO:0004725"
/db_xref="InterPro:IPR017867"
/db_xref="GeneID:10299819"
/translation="MNVLFLCTGNSCRSILAEATFNHLAPKGWHAMSAGSKPIGQVHP
RSLALLERECISTEGLFSKSWENLPETPDIVITVCGNADKEACPVYLDSALRTHWGVA
DPAKATGTEEEINAAFERAYRILRARIEFFFASSIEELIQSKSPSLQRRLDNIGVLRF
"
misc_feature complement(86574..86975)
/locus_tag="NAL212_0082"
/note="Low molecular weight phosphatase family; Region:
LMWPc; cd00115"
/db_xref="CDD:238063"
misc_feature complement(86586..86975)
/locus_tag="NAL212_0082"
/note="Protein-tyrosine-phosphatase [Signal transduction
mechanisms]; Region: Wzb; COG0394"
/db_xref="CDD:223471"
misc_feature complement(order(86934..86942,86946..86951,86955..86957))
/locus_tag="NAL212_0082"
/note="active site"
/db_xref="CDD:238063"
gene complement(86978..87397)
/locus_tag="NAL212_0083"
/db_xref="GeneID:10299820"
CDS complement(86978..87397)
/locus_tag="NAL212_0083"
/inference="protein motif:PFAM:PF00903"
/note="PFAM: Glyoxalase/bleomycin resistance
protein/dioxygenase;
KEGG: bte:BTH_II0960 glyoxalase family protein family"
/codon_start=1
/transl_table=11
/product="glyoxalase/bleomycin resistance
protein/dioxygenase"
/protein_id="YP_004296193.1"
/db_xref="GI:325983792"
/db_xref="InterPro:IPR004360"
/db_xref="GeneID:10299820"
/translation="MKRFHVHMSVENLQENIRFYSALFGVEPTVTKNDYAKWMLDDPY
INFAISATGAKPGLDHVGIQVDSDEALNEMNDRLVRADVPASEQKNAQCCYASSNKYW
TVDPQGIAWEAFHSLKTIPIFGKDTSIPAKSESCCAG"
misc_feature complement(87047..87394)
/locus_tag="NAL212_0083"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_20; cd07254"
/db_xref="CDD:176677"
misc_feature complement(87062..87385)
/locus_tag="NAL212_0083"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:216182"
misc_feature complement(order(87062..87064,87218..87220,87383..87385))
/locus_tag="NAL212_0083"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176677"
gene complement(87442..87771)
/locus_tag="NAL212_0084"
/db_xref="GeneID:10299821"
CDS complement(87442..87771)
/locus_tag="NAL212_0084"
/inference="protein motif:PFAM:PF01022"
/note="KEGG: bcj:BCAM0233 ArsR family regulatory protein;
PFAM: HTH transcriptional regulator, ArsR;
SMART: HTH transcriptional regulator, ArsR"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_004296194.1"
/db_xref="GI:325983793"
/db_xref="GO:0003700"
/db_xref="InterPro:IPR001845"
/db_xref="GeneID:10299821"
/translation="MEINIAIKALTALAHETRLTIFRILVQAGESGVAAGQLAKELNI
PNATLSFHLKELTNAELVTARQEGRFIYYSANFETMNALLGYLTENCCAGVPCSPVDV
CCDEKIS"
misc_feature complement(87544..87744)
/locus_tag="NAL212_0084"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:238042"
misc_feature complement(order(87592..87594,87682..87684,87700..87705,
87712..87717,87724..87726,87733..87735,87739..87744))
/locus_tag="NAL212_0084"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238042"
misc_feature complement(order(87553..87561,87574..87582,87598..87603,
87607..87612,87619..87624,87628..87639,87664..87672,
87718..87726,87736..87741))
/locus_tag="NAL212_0084"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238042"
misc_feature complement(order(87661..87663,87670..87672))
/locus_tag="NAL212_0084"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:238042"
gene 88033..88356
/locus_tag="NAL212_0085"
/db_xref="GeneID:10299822"
CDS 88033..88356
/locus_tag="NAL212_0085"
/inference="similar to AA sequence:KEGG:HEAR1579"
/note="KEGG: har:HEAR1579 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296195.1"
/db_xref="GI:325983794"
/db_xref="GeneID:10299822"
/translation="MLWLPLQGVAAAVLSVCVQEDFSRHHDKTMIADNHHHDDCHKQM
ANSTTDHLLASLPCDDTSCDAYSNTPILAGYSAPMPTNDTSAITSFSPGFTSFVPEQP
QRPPH"
gene 88586..88942
/locus_tag="NAL212_0086"
/db_xref="GeneID:10299823"
CDS 88586..88942
/locus_tag="NAL212_0086"
/inference="similar to AA sequence:KEGG:Nmul_A1630"
/note="KEGG: nmu:Nmul_A1630 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296196.1"
/db_xref="GI:325983795"
/db_xref="GeneID:10299823"
/translation="MKIKIITLIIIGLLGLLTSCAQMNLHPMDMAQSVQTAKTRADHE
ALVKYYEDAAKEMQAKLQEHKEMYEEYEANRQYYGKRGLDMEAMCRAMIHFYEEAVKG
NMDMANAHRKMAAETK"
sig_peptide 88586..88651
/locus_tag="NAL212_0086"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.988) with cleavage site probability 0.921 at
residue 22"
gene 89037..89357
/locus_tag="NAL212_0087"
/db_xref="GeneID:10299824"
CDS 89037..89357
/locus_tag="NAL212_0087"
/inference="protein motif:PFAM:PF11604"
/note="PFAM: Copper binding periplasmic protein CusF;
KEGG: rfr:Rfer_0412 secretion protein HlyD"
/codon_start=1
/transl_table=11
/product="copper binding periplasmic protein cusF"
/protein_id="YP_004296197.1"
/db_xref="GI:325983796"
/db_xref="InterPro:IPR021647"
/db_xref="GeneID:10299824"
/translation="MNRNAIVVFVNICVVLVLVGLMAMQPVSAATVTHEGTATVKGID
LDKGTVKLAHGPIASLKWPAMTMDFKFKDSALMQGINVGDAVTFTFVESNGDYVVTHI
KSSQ"
sig_peptide 89037..89126
/locus_tag="NAL212_0087"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.998 at
residue 30"
misc_feature 89148..89345
/locus_tag="NAL212_0087"
/note="Copper binding periplasmic protein CusF; Region:
CusF_Ec; pfam11604"
/db_xref="CDD:221147"
gene 89454..89671
/locus_tag="NAL212_0088"
/pseudo
/db_xref="GeneID:10299825"
gene 89772..90626
/locus_tag="NAL212_0089"
/db_xref="GeneID:10299834"
CDS 89772..90626
/locus_tag="NAL212_0089"
/inference="protein motif:PFAM:PF04116"
/note="PFAM: Fatty acid hydroxylase;
KEGG: gca:Galf_1902 fatty acid hydroxylase"
/codon_start=1
/transl_table=11
/product="fatty acid hydroxylase"
/protein_id="YP_004296198.1"
/db_xref="GI:325983797"
/db_xref="GO:0005506"
/db_xref="GO:0016491"
/db_xref="InterPro:IPR006694"
/db_xref="GeneID:10299834"
/translation="MNWNDWIIYNELIVKLTVFFGIFFLMAAWEQLAPCRALTISKSL
RWANNLGLVLLNGVVLRLLFPAGGVGVAIFVQQQGWGLLNYYQIPLFASIIISVVAMD
FIIYLQHIMMHAVPVLWRVHRVHHADLDYDLTTGIRFHPIEIILSMLIKAAVILLLGP
PVLAVVVFEVLLNAAAMFNHSNIHLPSGLDRVLRWVLVTPDMHRVHHSTKEDEANSNF
GFNLSWWDRLFGTYRDQPRGDHQSMVIGISGYRDPRQVERLPGMLALPWSEDISSYAI
NRRNRDQK"
misc_feature <89961..90563
/locus_tag="NAL212_0089"
/note="Sterol desaturase [Lipid metabolism]; Region: ERG3;
COG3000"
/db_xref="CDD:225546"
misc_feature 90051..90395
/locus_tag="NAL212_0089"
/note="Fatty acid hydroxylase superfamily; Region:
FA_hydroxylase; pfam04116"
/db_xref="CDD:217907"
gene complement(90862..90988)
/locus_tag="NAL212_0090"
/pseudo
/db_xref="GeneID:10299826"
gene 91101..91715
/locus_tag="NAL212_0091"
/db_xref="GeneID:10299835"
CDS 91101..91715
/locus_tag="NAL212_0091"
/inference="protein motif:PFAM:PF08241"
/note="PFAM: Methyltransferase type 11;
KEGG: gca:Galf_2172 methyltransferase type 12"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_004296199.1"
/db_xref="GI:325983798"
/db_xref="GO:0008168"
/db_xref="InterPro:IPR013216"
/db_xref="GeneID:10299835"
/translation="MDNKQYWEQVYTTKASDSVSWFQEHADQSLRLIHNTRLGKDAAI
IDVGGGASRLVDDLVAEGYTDLTVFDLSSIALAVAKQRLGEHADIVLWIEGDITRAKF
PMNRFDIWHDRAVFHFLTDPANRHAYVERVISAVRPGGHVIVATFAEDGPEKCSGLPV
MRYQPEALHAVFGDTFQLVEHEKEAHHTPFGTVQQFVYCYCRKR"
misc_feature 91212..>91544
/locus_tag="NAL212_0091"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:222415"
misc_feature 91230..91541
/locus_tag="NAL212_0091"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(91239..91259,91308..91313,91383..91391,91437..91439)
/locus_tag="NAL212_0091"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(91748..92155)
/locus_tag="NAL212_0092"
/db_xref="GeneID:10299827"
CDS complement(91748..92155)
/locus_tag="NAL212_0092"
/inference="similar to AA sequence:KEGG:Nmul_A0152"
/note="KEGG: nmu:Nmul_A0152 proline-rich region"
/codon_start=1
/transl_table=11
/product="proline-rich region"
/protein_id="YP_004296200.1"
/db_xref="GI:325983799"
/db_xref="GeneID:10299827"
/translation="MKQINFNSLTIILLGFLIKSFVWAGDGHHGGHVGGGHFGGYHGL
DIHFGYGLGLGYDLGYYGYGLPHYYPYPPVVTVPVSPVVASPPTHIQHNVSSAPQSES
SYWYYCRNPEGYYPYVRECSGGWEKISPQPPAQ"
sig_peptide complement(92081..92155)
/locus_tag="NAL212_0092"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.955) with cleavage site probability 0.954 at
residue 25"
gene complement(92155..92271)
/locus_tag="NAL212_0093"
/db_xref="GeneID:10299828"
CDS complement(92155..92271)
/locus_tag="NAL212_0093"
/inference="ab initio prediction:Prodigal:1.4"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004296201.1"
/db_xref="GI:325983800"
/db_xref="GeneID:10299828"
/translation="MIYLSSDLENTVSETNSSIKLIGPKKYYTAINGAKWSH"
CONTIG join(CP002553.1:1..92707)
//
