LOCUS NC_015967 3137 bp DNA circular BCT 01-SEP-2011
DEFINITION Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17202, complete
sequence.
ACCESSION NC_015967
VERSION NC_015967.1 GI:345301886
DBLINK Project: 72767
BioProject: PRJNA72767
KEYWORDS .
SOURCE Rhodothermus marinus SG0.5JP17-172
ORGANISM Rhodothermus marinus SG0.5JP17-172
Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
Rhodothermaceae; Rhodothermus.
REFERENCE 1 (bases 1 to 3137)
AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
Peters,L., Ovchinnikova,G., Chertkov,O., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Gladden,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of plasmid 2 of Rhodothermus marinus
SG0.5JP17-172
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3137)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3137)
AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
Peters,L., Ovchinnikova,G., Chertkov,O., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Gladden,J. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP003031.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4091627
Source DNA and organism available from John Gladden
(JMGladden@lbl.gov)
Contacts: John Gladden (JMGladden@lbl.gov)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Rhodothermus marinus SG0.5JP17-172
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Hot spring, Marine
num_replicons :: 3
ref_biomaterial :: Missing
biotic_relationship :: Free living
trophic_level :: Heterotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi08211
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Thermophile
Salinity :: Halophile
Gram Staining :: Gram-
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3137
/organism="Rhodothermus marinus SG0.5JP17-172"
/mol_type="genomic DNA"
/strain="SG0.5JP17-172"
/db_xref="taxon:762570"
/plasmid="pRHOM17202"
gene complement(102..2930)
/locus_tag="Rhom172_2917"
/db_xref="GeneID:11107517"
CDS complement(102..2930)
/locus_tag="Rhom172_2917"
/inference="protein motif:PFAM:PF08751"
/note="PFAM: TrwC relaxase;
KEGG: acr:Acry_3619 exonuclease V subunit alpha"
/codon_start=1
/transl_table=11
/product="TrwC relaxase"
/protein_id="YP_004826542.1"
/db_xref="GI:345301887"
/db_xref="InterPro:IPR014862"
/db_xref="GeneID:11107517"
/translation="MIRGVLISRASVQRQLDHMAAVPGRQDVVWHGIALSHDGLQGIA
REGKLSVAGTGARLLQLPAQVSTKQATALILGHQWDGVDIGGRQVCRPMYGIVWGADK
TISQLLAHEQLRPLVLEAMHEAVQKALAETERLLWTRAGKGGREAVPVRGVLALYSIH
MTSGDGSPHLHVHIGLRATAPSVDGRWRTLDPRAVFGLWKRTLDGAIGRHLYQALQQR
GIHVDEHVLVGSTWTPAIRSLTPHSERLSRRRQQVLEALATLADDPTWRQNLVAWRIT
RRDVALEAVEHGLDRMLRDPEQARRVAAVWGIPEGEIEKALGRTLPEAPPLKKALFRY
AEAVRMRDAQVRLQTARQIFGELQGHIRRWCVGDITAALAYHTDAASATALTYWLLRD
WQHLGLIQTRQSLSAAVFSRLLKGEITSTTELRAVFGPHAYVVTTRQLEEEQALYEKA
LGLARARRQPILTNAPAHFTPEQRAALDVLRRGRALSVVQGVAGAGKTTLLHPLVEAA
QQQGLRVQVLARNAIIARELGEELGVPSSTLETATRQGLRPRQPTLLIVDEGGVVDLH
HMQALLEAASQPHMQLVLLGDRQQTQPIDQRAAFAIVAAAAARAGQLRQLRTSFRTQA
WQAEHEALRRALSPQHAQKAVAMAGADGRIYGSTDLTTAIRQAVDWWQALSRRESTVI
LSPTNELAAAAATEAQSRLGITIDPRTRLRWGQRCGIGDTVRIRFNRHDLGLLNGTTA
RVVDIDQDGITIEHRGRRLYLDHGWTAEHVELAYALTIDSAQGLTVDRAIVLATETGH
SRLYTAATRGRQAPVWVVVHDEEETPDQALERRLQRDDIARTGHEHVGQRIGKSTSPE
KERLLAILQRLEEHDLIDPDLARLYRARILNDATRPRAKRFIELHVQLIQQAQGRRDV
LRLVRTARYEEAQRLLERGRNRDDGLEL"
misc_feature complement(<2361..2777)
/locus_tag="Rhom172_2917"
/note="conjugative relaxase domain, TrwC/TraI family;
Region: relax_trwC; TIGR02686"
/db_xref="CDD:162976"
misc_feature complement(954..1529)
/locus_tag="Rhom172_2917"
/note="AAA domain; Region: AAA_30; pfam13604"
/db_xref="CDD:205782"
misc_feature complement(480..776)
/locus_tag="Rhom172_2917"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
ORIGIN
1 tttgctggct cgaggcttgt cttggcggac tgctcgagcc agcttttttt ttttttcagt
61 tcagcctgtt aaggactgca ttggggaatg agttcccgtt atcagagttc cagtccgtcg
121 tcgcggttgc ggccgcgttc gagcaggcgc tgggcttctt cgtagcgggc cgtgcgcacc
181 aggcggagca cgtcgcgtcg gccctgggcc tgctgaatga gctgcacatg cagctcgatg
241 aagcgcttgg ctctgggtcg cgtggcgtcg ttgaggatgc gtgcccggta gaggcgggcc
301 aggtccggat cgatcaggtc gtgctcctcg aggcgctgta ggatggccag caagcgctct
361 ttttcgggcg acgtgctttt tccgatgcgc tggcccacat gctcgtgccc ggtgcgggcg
421 atgtcgtcgc gctgcaggcg tcgctcgagc gcctggtcgg gcgtctcctc ttcgtcgtgc
481 accaccaccc agacgggcgc ctgtctgccg cgcgtggcag cggtgtacag gcggctgtgg
541 ccggtctccg tggccagcac gatggcccgg tccacggtca ggccctgcgc cgagtcgatc
601 gtgagcgcgt aggcgagctc gacgtgctcc gctgtccagc cgtgatcaag atagagacgg
661 cggcccctgt gctcgatggt gatgccgtcc tggtcgatgt ccacgacgcg ggcggtggta
721 ccgttgagca gccccaagtc gtgcctgttg aagcggatgc gcacggtgtc gccgatgccg
781 caccgctggc cccacctcaa acgcgtgcgt gggtcgatgg tgatacccag gcggctctgt
841 gcttcggtgg cggcggcggc ggcaagttcg tttgtggggc tcaggatgac tgtgctttca
901 cggcgggaca gggcctgcca ccagtccacg gcctgtctga tagcggtagt caagtccgtg
961 ctgccataga tgcggccgtc tgcgccggcc atcgcgacgg ccttctgcgc gtgctgcggg
1021 ctgagtgccc ggcggagcgc ctcgtgctcg gcctgccagg cctgcgtgcg gaagctggtg
1081 cggagctggc ggagctggcc ggcgcgtgcg gcggcggccg ccactatggc gaaggcggcc
1141 cgctggtcga tcggctgcgt ctgctgccgg tcgcccagca gcacaagctg catgtgcggc
1201 tggctggccg cttcgagcag ggcctgcatg tgatgcaggt ccacgacgcc gccttcgtcc
1261 acgatcagca gcgtgggctg tcgtggccgg aggccctgtc gggtggccgt ctccagcgtc
1321 gaagacggca cgccgagctc ctcgccgagc tcgcgtgcga tgatcgcatt gcgggccagc
1381 acctgcacgc ggaggccctg ctgctgcgcg gcttcgacaa gggggtgaag cagcgtcgtc
1441 ttgcccgcgc cggcgacgcc ctgcaccacc gaaagcgccc ggccgcgtcg tagcacatcc
1501 agcgcggccc gctgctccgg ggtaaaatgc gccggcgcgt tggtcaaaat gggctgtcga
1561 cgtgcccggg caagccctaa cgccttttcg tagagcgcct gctcctcctc gagctggcgc
1621 gtggtgacga cgtaggcgtg cggcccgaag acggcccgaa gctcggtcgt gctggtgatc
1681 tcgcctttga ggagccggga gaaaacggct gccgaaaggc tctgccgggt ctggatcagc
1741 cccaggtgct gccagtcacg caagagccag taggtgaggg cggtggcgct ggcggcgtcg
1801 gtgtggtagg cgagggccgc cgtgatgtcg ccgacgcacc accgccttat atgcccctgt
1861 agctcgccga agatctggcg ggccgtctga aggcgcacct gggcgtccct catgcggact
1921 gcttcggcat agcgaaaaag tgcttttttc agcgggggtg cttcggggag cgtgcggccc
1981 agcgcctttt cgatctcgcc ttcagggatg ccccagacgg cggccacgcg gcgggcctgc
2041 tcgggatcgc gcagcatgcg gtccaggccg tgctccacgg cctccagtgc tacatcccgg
2101 cgcgtgatgc gccaggcgac caggttctgc cgccaggtcg ggtcgtcggc cagcgtcgca
2161 agggcttcga gcacctgctg ccgccggcgc gacagacgct cgctgtgcgg ggtcaggctc
2221 cggatggcgg gtgtccaggt ggagcctacc agcacatgct catcgacgtg gatgccgcgc
2281 tgctggagtg cctggtatag gtggcggccg atggcaccgt cgagcgtacg cttccagagg
2341 ccgaagacgg cgcgggggtc gagcgtgcgc cagcggccgt ccacgctcgg ggctgtggcg
2401 cgtaggccga tgtgcacgtg caggtggggg gagccgtcgc cggaggtcat gtggatgctg
2461 tagagggcca gcacgcccct gacggggacc gcctcccggc cgccctttcc ggcgcgggtc
2521 caaaggagcc gctccgtctc agccagcgcc ttctggacgg cttcgtgcat ggcctcgagc
2581 accagcgggc ggagctgctc atgcgccagg agctgactga tcgtcttgtc ggcgccccac
2641 acaatcccgt acatgggacg gcacacctgt cggccgccga tgtccacgcc gtcccactgg
2701 tggccgagga tcagggccgt ggcctgcttg gtcgagacct gcgcggggag ctgtagcagg
2761 cgtgcacccg tcccggctac agagagcttg ccttcgcggg cgatgccctg cagcccgtcg
2821 tgcgacagcg cgatgccgtg ccagaccacg tcctgacggc cgggcacagc cgccatgtgg
2881 tcgagctggc gctgcacgct cgcacgcgat atgagcacgc cgcggatcat ctcacccgaa
2941 agggtgtctg tgtgcttgct tgcctttgac gccagcgatg cgccgagagt tccagcacca
3001 gcggtcggtg aagacaaacc acccccttgg acggactacg gcttggaatc ggggtcgagg
3061 aaaactttcg cctgccctgt cgggcttgga actgcttgct tgatgtgagg ttgatctgca
3121 tagcgatggt ttcgctt
//
