LOCUS NC_016929 1150228 bp DNA circular BCT 25-DEC-2012
DEFINITION Rickettsia canadensis str. CA410 chromosome, complete genome.
ACCESSION NC_016929
VERSION NC_016929.1 GI:379022404
DBLINK Project: 88063
BioProject: PRJNA88063
KEYWORDS .
SOURCE Rickettsia canadensis str. CA410
ORGANISM Rickettsia canadensis str. CA410
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
Rickettsiaceae; Rickettsieae; Rickettsia; belli group.
REFERENCE 1 (bases 1 to 1150228)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 1150228)
AUTHORS Johnson,S.L., Munk,A.C., Han,S., Bruce,D.C. and Dasch,G.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Genome Science B6, Los Alamos National
Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP003304.
Annotation was added by the NCBI Prokaryotic Genomes Automatic
Annotation Pipeline Group. Information about the Pipeline can be
found here:
http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
aware that the annotation is done automatically with little or no
manual curation.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1150228
/organism="Rickettsia canadensis str. CA410"
/mol_type="genomic DNA"
/strain="CA410"
/db_xref="taxon:1105107"
gene 1..822
/locus_tag="RCA_00005"
/db_xref="GeneID:11861131"
CDS 1..822
/locus_tag="RCA_00005"
/note="COG1806 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="PEP synthetase regulatory protein"
/protein_id="YP_005299066.1"
/db_xref="GI:379022405"
/db_xref="GeneID:11861131"
/translation="MTKLIIHLVSDSSVQTAKYAANSALAQFTSVKPKLYHWPMIRNL
ELLNEVLSKIESKRGIVLYTIADQELRKTLTKFCYELKIPCISIIGKIIKEMSVFSDI
EIEKEQNFNYKFDKTYFDTLNAIDYAIRHDDGQMLNELPEADIILIGPSRTSKTPTSV
FLAYNGLKAANIPYVYNCPFPDFIEKDIDQLVVGLVINPNRLIEIREARLNLLQINEN
KSYTDFNIIQKECLEVRKICEQRNWPVIDVSTRSIEETAALIMRIYYNRKNKYNK"
misc_feature 1..813
/locus_tag="RCA_00005"
/note="PEP synthetase regulatory protein; Provisional;
Region: PRK05339"
/db_xref="CDD:180026"
gene 1065..1382
/locus_tag="RCA_00010"
/db_xref="GeneID:11861133"
CDS 1065..1382
/locus_tag="RCA_00010"
/note="COG0526 Thiol-disulfide isomerase and thioredoxins"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_005299067.1"
/db_xref="GI:379022406"
/db_xref="GeneID:11861133"
/translation="MASNVNDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEIS
KELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKSYLLDWIH
KFV"
misc_feature 1098..1367
/locus_tag="RCA_00010"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature order(1152..1154,1161..1163)
/locus_tag="RCA_00010"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene 1393..2136
/locus_tag="RCA_00015"
/db_xref="GeneID:11861145"
CDS 1393..2136
/locus_tag="RCA_00015"
/note="COG1134 ABC-type polysaccharide/polyol phosphate
transport system, ATPase component"
/codon_start=1
/transl_table=11
/product="O-antigen export system ATP-binding protein
RfbE"
/protein_id="YP_005299068.1"
/db_xref="GI:379022407"
/db_xref="GeneID:11861145"
/translation="MSLNHSKVLIEITDGYVEGIDTHKRAQGLKHFFLKKGVSLSPNI
LILNNINFSCYEGEKVAFIGTNGSGKSSLLKLIAGIYPLKSGTIKVHGDIAAIIDMGV
GFESEQTGRENIKMLMLYNNMLDKYSEKIEKEIIDFSELGNKIDLPIKIYSSGMLSRL
AFSVSIFQNPQILLLDEVFAAGDSYFIEKSLSLMKNKFKNTPISIIVSHQEEIIKDNC
DRCILLKDGNIIGDGTPSEMFKIYNRLLV"
misc_feature 1393..2130
/locus_tag="RCA_00015"
/note="ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagH; COG1134"
/db_xref="CDD:31329"
misc_feature 1420..2091
/locus_tag="RCA_00015"
/note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and...;
Region: ABC_KpsT_Wzt; cd03220"
/db_xref="CDD:72979"
misc_feature 1582..1605
/locus_tag="RCA_00015"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72979"
misc_feature order(1591..1596,1600..1608,1810..1812,1918..1923,
2017..2019)
/locus_tag="RCA_00015"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72979"
misc_feature 1801..1812
/locus_tag="RCA_00015"
/note="Q-loop/lid; other site"
/db_xref="CDD:72979"
misc_feature 1846..1875
/locus_tag="RCA_00015"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72979"
misc_feature 1906..1923
/locus_tag="RCA_00015"
/note="Walker B; other site"
/db_xref="CDD:72979"
misc_feature 1930..1941
/locus_tag="RCA_00015"
/note="D-loop; other site"
/db_xref="CDD:72979"
misc_feature 2005..2025
/locus_tag="RCA_00015"
/note="H-loop/switch region; other site"
/db_xref="CDD:72979"
gene 2295..3071
/locus_tag="RCA_00020"
/db_xref="GeneID:11861179"
CDS 2295..3071
/locus_tag="RCA_00020"
/note="COG1682 ABC-type polysaccharide/polyol phosphate
export systems, permease component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299069.1"
/db_xref="GI:379022408"
/db_xref="GeneID:11861179"
/translation="MIKYFFSKKYWQAIALLVKASIIRQNKDSFLGSLWSLIQPFIHI
MVISYFFSFLLRQPREFMVMNLVGGLPLWSFIVSSLTICSSSLVTRDQIIKKVRISKT
FFPVSDSLGQLYNLICSFSAMYFAFILLFPEKFSWQIIFMPILIFPLIICVISGSIAV
AFLTPYIRDIPQILNVILGVIYWSIPIVYPYSLIPESKRIYFEFNPFFLVIRPVQALV
IDGTLPDMMLIVKSVIVAFITVCISYFIYRQFSKRVIYYL"
misc_feature 2295..3068
/locus_tag="RCA_00020"
/note="ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane];
Region: TagG; COG1682"
/db_xref="CDD:31868"
gene 3068..6211
/locus_tag="RCA_00025"
/db_xref="GeneID:11861240"
CDS 3068..6211
/locus_tag="RCA_00025"
/note="COG0493 NADPH-dependent glutamate synthase beta
chain and related oxidoreductases"
/codon_start=1
/transl_table=11
/product="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase"
/protein_id="YP_005299070.1"
/db_xref="GI:379022409"
/db_xref="GeneID:11861240"
/translation="MKLGFNLDFNELDLTGLKKLDQIFLDYLFKADSSLHKDLILFRS
TPFSIIPQDYSEFLLKISPYLDDFLAELFCISKEVIISRLKHKDFDIIYECKRKFVQR
IAIKKYPPEKIKNIDFEEIYLKLTDLIGTNFTSREFAKQIIIWQQEEESFVEELDIAA
QYAAYMVYDQCHFRKSVNLEKLSLDPCFYRDDITNDSILFNLPQKLDKENLIDDKKIL
KYQRNQRIDFNYTDIFSNLEEALNNSHYCIYCHKQDKDSCSKGINVIRWPRHHGIQKK
IKKDWIPRLDRGMTTGCPLKQKISEMNYVKAQGFNLSALAIIVIDNPMVAATGHRICN
DCVRACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKESTN
YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKISLLPFDVNKPIKFWHEYKSLLSER
MARGFGGVSEYGITIRWDKNNLDILQLILERNDNFKYYDGVTLGSNIMKEQAFSLGFD
HIAFCIGAGQPKVLDIENFEAKGVKMASDFLMTLQSGGAFLENSNANMLIRMPIAIIG
GGLTSIDAATESLYYYKMQVERFFKDYELAVQKYGKDYIEKDLTEEDKEIAEEFIAHA
RLFKEVKNHEELRKLFNKLGGSTIYYRGKLQESPAYKLNHEELIYAMALGIDFRENMQ
PLRINTDKYGHVESVTFSIIPRLDHGIQIQGNYQDNIMDPAIKSWDDTEVLKAKTVII
AIGIENNLELDENKYSYFGDCNPEYSGSVVKALASSKEGYENINKRLINNNPSFKDSH
RDFITQLDYLLISRVHKINILDDKTFELVIHSPLAAKNFKFGQFFRLQNYSEDAAKLI
EPLALSPTDIDIEKGLISFIVFEVGKSTSLCKTLSENEKVVLMGPTGIPLEIPQNKKI
VIVDSKVSNVSLLKVLKENNNEVIFFTYPDIKTRKLTSVDRVIINASPEIIEELQSLK
NEIFGENTELIVSVNSSMQCMMKGICGQCIQKVRGEQKYIFACSCQNQKAEIVDFESL
KTRLRKNSLQEKMRRLI"
misc_feature 3068..6205
/locus_tag="RCA_00025"
/note="putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase; Validated; Region:
PRK06567"
/db_xref="CDD:168614"
misc_feature 5504..6127
/locus_tag="RCA_00025"
/note="FAD/NAD binding domain (electron transfer subunit)
of dihydroorotate dehydrogenase-like proteins.
Dihydroorotate dehydrogenases (DHODs) catalyze the only
redox reaction in pyrimidine de novo biosynthesis. They
catalyze the oxidation of (S)-dihydroorotate...; Region:
DHOD_e_trans_like; cd06192"
/db_xref="CDD:99789"
misc_feature order(5636..5638,5642..5653,5693..5701,5717..5725,
5828..5830,6029..6034)
/locus_tag="RCA_00025"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5642..5644,5648..5653)
/locus_tag="RCA_00025"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5714..5716,5723..5725,5732..5734,5744..5746,
5768..5770,5774..5776)
/locus_tag="RCA_00025"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99789"
misc_feature order(5813..5815,5825..5836)
/locus_tag="RCA_00025"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99789"
misc_feature order(5828..5833,5945..5950)
/locus_tag="RCA_00025"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99789"
misc_feature order(6041..6043,6059..6061,6068..6070,6116..6118)
/locus_tag="RCA_00025"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99789"
gene complement(6330..7124)
/locus_tag="RCA_00030"
/db_xref="GeneID:11861298"
CDS complement(6330..7124)
/locus_tag="RCA_00030"
/EC_number="2.3.1.129"
/note="COG1043 Acyl-[acyl carrier
protein]--UDP-N-acetylglucosamine O-acyltransferase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine acyltransferase"
/protein_id="YP_005299071.1"
/db_xref="GI:379022410"
/db_xref="GeneID:11861298"
/translation="MSNSNIHPTAVIAEGANLGKNVKIGPYCIIGAEVVLNDNVELKS
HVVIEGITEIGENTVIYPFASIGQPPQILKYANERSSTIIGSNNTIREYVTVQAGSQG
GGMITRIGNNNLFMVGVHVGHDCKIGNNVVFANYVSLAGHIEVGDYVIISGLSAVHQY
ARIGKYSMIGGLSPVGSDVIPFGLVSSKRAVLEGLNLIGMNRKGFDKAESLSALKAIK
EIFSSEGNFAERIKQVAEKYKNNSIVMQIIDFLNQDSSRAFCHFEK"
misc_feature complement(6333..7121)
/locus_tag="RCA_00030"
/note="UDP-N-acetylglucosamine acyltransferase;
Provisional; Region: PRK05289"
/db_xref="CDD:179994"
misc_feature complement(6348..7112)
/locus_tag="RCA_00030"
/note="UDP-N-acetylglucosamine O-acyltransferase
(UDP-GlcNAc acyltransferase): Proteins in this family
catalyze the transfer of (R)-3-hydroxymyristic acid from
its acyl carrier protein thioester to UDP-GlcNAc. It is
the first enzyme in the lipid A biosynthetic...; Region:
LbH_UDP-GlcNAc_AT; cd03351"
/db_xref="CDD:100042"
misc_feature complement(order(6516..6521,6537..6539,6612..6614,
6648..6653,6699..6701,6756..6758,6765..6767,6834..6836,
6903..6905,6912..6914))
/locus_tag="RCA_00030"
/note="active site"
/db_xref="CDD:100042"
gene complement(7132..7566)
/gene="fabZ"
/locus_tag="RCA_00035"
/db_xref="GeneID:11861327"
CDS complement(7132..7566)
/gene="fabZ"
/locus_tag="RCA_00035"
/EC_number="4.2.1.-"
/note="COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl
carrier protein) dehydratases"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_005299072.1"
/db_xref="GI:379022411"
/db_xref="GeneID:11861327"
/translation="MMDITEIMNLIPHRYPFLLVDRVLEIDLNKSILGIKNVTVNEPQ
FTGHFPARPVMPGVLMVEAMAQLAAILVAKSLGSTKNKEVFLMTIENSKFRRIVQPGD
TMHIHTVIDQQRANVWKFSSTVKIEGEITAESKFTAMIKDKA"
misc_feature complement(7144..7536)
/gene="fabZ"
/locus_tag="RCA_00035"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene complement(7567..8595)
/gene="lpxD"
/locus_tag="RCA_00040"
/db_xref="GeneID:11861364"
CDS complement(7567..8595)
/gene="lpxD"
/locus_tag="RCA_00040"
/EC_number="2.3.1.-"
/note="COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_005299073.1"
/db_xref="GI:379022412"
/db_xref="GeneID:11861364"
/translation="MASSNFYKNLGPRKLTTIIDFLHDIIEHPKIYEDIVIHDIKILQ
EASRNDISFLSNTKYSEFLKTTNAAACIVPKNFKGEVNPNTILIHAENSYFAYGKLID
FFYAPIKSYPAKIMKSAIIAASAIIGKNCYIGHNVVIEDDVIIGDNSIIEAGSFIGRG
VNLGRNARIEQHVSINYAIIGDDVVILTGAKIGQDGFGFSTEKGVHHQIFHTGIVKIG
NNVKIGANTTIDRGSLQDTIIEDLCCIDNLVQIGHGVKIGKGSIIIAQVGIAGSSTIG
KYCALGGQVGIAGHLNIGDQVQVAAQSGVAQNIEAGKIVGGSPAVHIMNWHRQSIIMK
QLIKKRPK"
misc_feature complement(7570..8565)
/gene="lpxD"
/locus_tag="RCA_00040"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional; Region: lpxD; PRK00892"
/db_xref="CDD:179158"
misc_feature complement(8284..8499)
/gene="lpxD"
/locus_tag="RCA_00040"
/note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase, LpxD; Region: LpxD; pfam04613"
/db_xref="CDD:203056"
misc_feature complement(7615..8214)
/gene="lpxD"
/locus_tag="RCA_00040"
/note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
The enzyme catalyzes the transfer of 3-hydroxymyristic
acid or 3-hydroxy-arachidic acid, depending on the
organism, from the acyl carrier protein (ACP) to
UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
LbH_LpxD; cd03352"
/db_xref="CDD:100043"
misc_feature complement(order(7621..7623,7633..7635,7684..7692,
7726..7728,7738..7746,7762..7764,7792..7800,7810..7812,
7816..7818,7834..7836,7846..7848,7852..7860,7864..7866,
7891..7899,7906..7908,7912..7914,7918..7920,7930..7932,
7966..7974,8005..8007,8011..8013,8029..8031,8035..8037,
8068..8070,8074..8076,8080..8082,8119..8121,8173..8178,
8188..8190))
/gene="lpxD"
/locus_tag="RCA_00040"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100043"
misc_feature complement(order(7693..7695,7726..7731,7780..7788,
7801..7806,7834..7839,7846..7848,7858..7860,7999..8007))
/gene="lpxD"
/locus_tag="RCA_00040"
/note="active site"
/db_xref="CDD:100043"
misc_feature complement(order(7726..7731,7780..7785,7834..7839,
7999..8007))
/gene="lpxD"
/locus_tag="RCA_00040"
/note="UDP-GlcNAc binding site [chemical binding]; other
site"
/db_xref="CDD:100043"
misc_feature complement(order(7693..7695,7786..7788,7801..7806,
7846..7848,7858..7860))
/gene="lpxD"
/locus_tag="RCA_00040"
/note="lipid binding site [chemical binding];
lipid-binding site"
/db_xref="CDD:100043"
gene complement(8617..8692)
/locus_tag="RCA_t05287"
/db_xref="GeneID:11861100"
tRNA complement(8617..8692)
/locus_tag="RCA_t05287"
/product="tRNA-Phe"
/db_xref="GeneID:11861100"
gene 8862..9842
/locus_tag="RCA_00045"
/db_xref="GeneID:11860322"
CDS 8862..9842
/locus_tag="RCA_00045"
/note="COG0042 tRNA-dihydrouridine synthase"
/codon_start=1
/transl_table=11
/product="nifR3-like protein"
/protein_id="YP_005299074.1"
/db_xref="GI:379022413"
/db_xref="GeneID:11860322"
/translation="MIKIGDIVLSSNIILAPMSGVTDLEFRRLVKRFGVGLVVSEMVA
SRAMIVESRQSLQKSAIMRDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGC
PAKKVVEGYSGSALMRDEQLAAKIFEATVKAVKIPVTVKMRMGWDDQTKNAPTLANIA
ENSGIQMVTVHGRTRCQFYSGNADWDFIRSVKEVVKIPVIANGDITNFTKAKEALQKS
AADGIMIGRGAYGKPWLISQIDHYLKTGEAKPAPSIAEQLDIVTEHYEAIIDYYGESV
GVPIARKHIGWYSSGLPNSAEFRGAVNLMNDSVAVKEKIKEFYTSIIDTR"
misc_feature 8871..9827
/locus_tag="RCA_00045"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature 8895..9593
/locus_tag="RCA_00045"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature order(8907..8915,8985..8987,9075..9077,9156..9158,
9282..9284,9372..9374,9465..9467,9471..9473,9537..9542)
/locus_tag="RCA_00045"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature order(9075..9077,9165..9170,9282..9284,9288..9290,
9369..9374,9378..9383,9468..9473,9540..9542)
/locus_tag="RCA_00045"
/note="active site"
/db_xref="CDD:73368"
misc_feature order(9165..9167,9288..9290,9372..9374,9378..9380)
/locus_tag="RCA_00045"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature order(9168..9170,9282..9284,9369..9371,9381..9383,
9468..9473)
/locus_tag="RCA_00045"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene complement(10434..10865)
/locus_tag="RCA_00050"
/db_xref="GeneID:11860323"
CDS complement(10434..10865)
/locus_tag="RCA_00050"
/note="COG0802 Predicted ATPase or kinase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299075.1"
/db_xref="GI:379022414"
/db_xref="GeneID:11860323"
/translation="MFINLNNEEETKNLAKRFAQNLKPNDIVLLNSDLGSGKTFFCRE
IIKYFCGENTSIISPTFNLLQTYKASNFTIYHYDLYRLKSPEEIYELGFEEALNGNLI
LIEWSQIIKHLLPTTLIEVNLEVLDENKRLCSIITNYKENS"
misc_feature complement(10467..10835)
/locus_tag="RCA_00050"
/note="Uncharacterized P-loop hydrolase UPF0079; Region:
UPF0079; pfam02367"
/db_xref="CDD:202221"
gene complement(10856..11656)
/locus_tag="RCA_00055"
/db_xref="GeneID:11860324"
CDS complement(10856..11656)
/locus_tag="RCA_00055"
/note="COG0803 ABC-type metal ion transport system,
periplasmic component/surface adhesin"
/codon_start=1
/transl_table=11
/product="zinc/manganese ABC transporter substrate binding
protein"
/protein_id="YP_005299076.1"
/db_xref="GI:379022415"
/db_xref="GeneID:11860324"
/translation="MTYILIFFTLFSFASYAKPKIVVSITPIASIVSMLVKDKADIKS
LAISSDCPHHYNLKPSDLAKVKNADIAIYINEQFDGFAKKLIDNHSQNIIKISDIKSL
TSIKDNWHIWLDLNNSAILLQEFAQIFSEKFPALQEDINNNLSAALKELNKLKEIKNN
ALASLKDVILLSDSTEYFFLNTNIKTAKLYSESQKSLQYISNLEALIKGSNNKCLVLS
NKQTSQLYDKLNTKIIILNSENWNVKNINSNTFQNQYLQIIDQVKKCL"
misc_feature complement(10859..11647)
/locus_tag="RCA_00055"
/note="ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism]; Region: LraI; COG0803"
/db_xref="CDD:31146"
misc_feature complement(10859..11596)
/locus_tag="RCA_00055"
/note="Periplasmic solute binding protein family; Region:
SBP_bac_9; pfam01297"
/db_xref="CDD:201717"
misc_feature complement(order(11276..11278,11396..11398,11405..11410))
/locus_tag="RCA_00055"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene complement(11760..12971)
/locus_tag="RCA_00060"
/db_xref="GeneID:11860325"
CDS complement(11760..12971)
/locus_tag="RCA_00060"
/note="COG0617 tRNA nucleotidyltransferase/poly(A)
polymerase"
/codon_start=1
/transl_table=11
/product="poly(A) polymerase"
/protein_id="YP_005299077.1"
/db_xref="GI:379022416"
/db_xref="GeneID:11860325"
/translation="MQIIQKTLKISSKGYKKILRLLNEKGQARLIGGCVRDALLKKDS
YDIDIDTTLIPSEVINILSRAKIKTIPTGLKFGTITAILDKEKFEITTLRKDIECNGR
HAKLVFTNDFAEDAARRDFTINALSYCPFKNKIYDYFDGFKDLQQEKVVFIGEALNRI
KEDYLRILRFFRFSSYYANQLDHEGLKACKVLKDGLKTLSRERIKSEMNKIIVSKRAA
QILEAMFEIGILELIFSIQNYKIKFFEQANDFKLELATRYALLLYNQKDLNLKVFLDW
KFSKYEAMQILSITNFLNDTECNMKKIWLEKNNYKEYLLAASIIGKIDYLQVKEFIRK
YDAVLRPKFQVNGNNLLNMNIEKKEIGAKLEYLKNFWIEHDFKPSKLELLRVISRGSS
NPVIKRSKYEK"
misc_feature complement(11820..12959)
/locus_tag="RCA_00060"
/note="tRNA nucleotidyltransferase/poly(A) polymerase
[Translation, ribosomal structure and biogenesis]; Region:
PcnB; COG0617"
/db_xref="CDD:30962"
misc_feature complement(12531..12938)
/locus_tag="RCA_00060"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature complement(order(12600..12602,12609..12620,12690..12692,
12705..12707,12744..12746,12828..12830,12834..12836,
12861..12866,12873..12878))
/locus_tag="RCA_00060"
/note="active site"
/db_xref="CDD:143388"
misc_feature complement(order(12600..12602,12612..12620,12828..12830,
12834..12836,12864..12866,12873..12878))
/locus_tag="RCA_00060"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature complement(order(12705..12707,12828..12830,12834..12836))
/locus_tag="RCA_00060"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature complement(12270..12434)
/locus_tag="RCA_00060"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
gene 14247..14408
/locus_tag="RCA_00065"
/db_xref="GeneID:11860326"
CDS 14247..14408
/locus_tag="RCA_00065"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299078.1"
/db_xref="GI:379022417"
/db_xref="GeneID:11860326"
/translation="MIFRDKYAKNKSNNHPISKMKNMLEFLVKVNIKQIQKMIKIVVN
ESSKLSINS"
gene 14666..19096
/locus_tag="RCA_00070"
/db_xref="GeneID:11860327"
CDS 14666..19096
/locus_tag="RCA_00070"
/codon_start=1
/transl_table=11
/product="cell surface antigen Sca1"
/protein_id="YP_005299079.1"
/db_xref="GI:379022418"
/db_xref="GeneID:11860327"
/translation="MSTLIEQSQLQKSRFLKYSLLASISVGTIITLPFEGMASSEPIN
LDIIERGDNGLLQSVINNKFERAKSFCTAGNKRKRPPTRRKILVGNETTEQNQNIDTS
EPIEQTAQKPEIIITVSSPTVSPTSGSFVTAPNTLNTTPIFSTPSTSPELYTTAPGTP
YDEPIPHATPNNQYAVARRLSFSEPQQIEQPTTLIKPTISPKPTTLEITAGIVNRIST
HNENAKRKLGMITAAIEQTSGKKAKKSAQKKTPAAEVSTAGPFLNQQRQLDVLTQKQK
VNAVRQAAVNKKKRRENEVKRNSTDVEKLITQMNQVQLEQNQRPIAAELQRKAETSTK
HVTIKNKNKSKADKVRQEKTFLQKIHLTKTEQEKKIAEDKNARAAAEKVRKEKNKQTQ
KAEEISNIKLKVSEQLIQMLDYKAKLQEKLQEVERIEAKHEVSGIKKELKNVEKLVSK
AAKVVNNAETETSRTTLQAMQDKMNGYSEQLDKIEENLKLLTPIVYSSNDSTYKQPPK
VKPIMPLTSGVQGILGKQLQLEEKYGYLVPNQTQPQTYTTVLPNQEVADPKSMDSGFV
SLDKETDADVGFNTSCGKGTYCTQVGQELSFELPTLKVLGYQDNINQTLDTIARANNI
ERPILFQNLLKDLERRKQEAKMVEEQAIMHVINNPNDDQAKEQVALVDKLLEKYNTDI
KLVRKALEDNKENNRNNVKKTLERLVFEAKLPPIREYDALCEESQKVIASKRATEELR
NQREDDPELEKLAIEYMEVQKKQSQLEQDIKAIDPLFQAAIYSDSELSRSYSVGDILS
NTESNLSHSSSVSSLNNLSSSNVMKLEELKSKYEKISNDYKAKELELDALNQNDPKFK
ELMLEVFAMSKDKIWLEGEIKHLETQFEPNIHSAEGKPVFSPDSINSIFSGVDYINTN
DPTKLIENKIAALRIYQMAVIVKRQELEQLPSTSSGADQTAQQIKELQEKEVIMHDAI
NACIADPSKLNNVSFEEIKEALKKLSAGIPESVINVLESKAQEDPEDILNGLTLQEML
SSNNDTTIDSLPSGKEQSSEDEEVTKAGIQEVEDKQLLALPVSSNEYALALSDDSEKE
CLVLGDGSEDEDDDNDSGIDSESEEGVVDQLPDSREDNLKTTEVNTVISLKQEVIEET
KKSIAAIAPTLNQGVQVVKNISKSILGARLDSSEALTAVAAGDEEESRIKRGLWMRGM
YGTNNHGRVDNMTGYRGINKGTTIGFDFEIDNNIVGIAYSNVYSVFKFKNSKNNDKEF
INSHVVSIYGQKELPKNFVAQALVSASKNFIKDKTTYSYGDINIRSNVKHRNHSYNAE
ALLNYNYLVKNNLVITPNIGLRYGKSRDGVYNEIGINVQEIALTMKENNILSGIIGTK
VKVPLKDVLKFNKLGLIFQGAVEHNFKEKTQRINRVIKILDNTFKQYYLIPKQPKISY
NLGVGIMGSIKNTTISLDYNYYLNKHYRSHQGSVKLKVNL"
misc_feature 18251..19069
/locus_tag="RCA_00070"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 19212..19286
/locus_tag="RCA_t05289"
/db_xref="GeneID:11860328"
tRNA 19212..19286
/locus_tag="RCA_t05289"
/product="tRNA-Glu"
/db_xref="GeneID:11860328"
gene 19930..20085
/locus_tag="RCA_00075"
/db_xref="GeneID:11860329"
CDS 19930..20085
/locus_tag="RCA_00075"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase"
/protein_id="YP_005299080.1"
/db_xref="GI:379022419"
/db_xref="GeneID:11860329"
/translation="MLDSFDHETGKPIKYEKILDWPCIEYDPKDDTLGKKAIDKVLNF
IPVNSID"
gene complement(21889..22383)
/locus_tag="RCA_00080"
/db_xref="GeneID:11860330"
CDS complement(21889..22383)
/locus_tag="RCA_00080"
/EC_number="3.6.3.14"
/note="COG0711 F0F1-type ATP synthase, subunit b"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B"
/protein_id="YP_005299081.1"
/db_xref="GI:379022420"
/db_xref="GeneID:11860330"
/translation="MNFLDENFCLAVSFVIFVYLIYKPAKKAILNSLDVKILEIQERV
LKAKKLKEDAVLLFEQTNAQIKQLDTLRSQMIEESNKVTKKIIQEKTKEIEEFLEHKK
SDAIKLIQHQKLITSKELQDEFCDEVIKLVSKYFQSVKLSESNIAKNLMDKSDFVHNN
DKVT"
misc_feature complement(21907..22383)
/locus_tag="RCA_00080"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
misc_feature complement(21922..22383)
/locus_tag="RCA_00080"
/note="F0F1 ATP synthase subunit B; Validated; Region:
PRK06568"
/db_xref="CDD:168615"
gene complement(22383..22850)
/locus_tag="RCA_00085"
/db_xref="GeneID:11860331"
CDS complement(22383..22850)
/locus_tag="RCA_00085"
/EC_number="3.6.3.14"
/note="COG0711 F0F1-type ATP synthase, subunit b"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit B'"
/protein_id="YP_005299082.1"
/db_xref="GI:379022421"
/db_xref="GeneID:11860331"
/translation="MPQFDIATYYSQIFWLIVTFGLLYIFIYKFITPKAEEIFNNRQT
NIQDNITQADILTLEVEKLNKYYNEEVEKTNTAIDRLKKAKIYSLESEFLIKKKNLEQ
DLKNSINKNIEDINLAAKRFRTNKSEAIIKLAVNIIEKVAGTKADIDLLKKIK"
misc_feature complement(22386..22850)
/locus_tag="RCA_00085"
/note="F0F1 ATP synthase subunit B'; Validated; Region:
PRK06569"
/db_xref="CDD:180627"
misc_feature complement(22392..22814)
/locus_tag="RCA_00085"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
gene complement(22868..23092)
/locus_tag="RCA_00090"
/db_xref="GeneID:11860332"
CDS complement(22868..23092)
/locus_tag="RCA_00090"
/EC_number="3.6.3.14"
/note="COG0636 F0F1-type ATP synthase, subunit
c/Archaeal/vacuolar-type H+-ATPase, subunit K"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit C"
/protein_id="YP_005299083.1"
/db_xref="GI:379022422"
/db_xref="GeneID:11860332"
/translation="MDIVSLKFIGVGLMAIGMYGAALGVSNIFSSLLNAIARNPAAAE
NLQRMALIGAGLAEAIGLFSFVIAMLLIFS"
misc_feature complement(22871..23092)
/locus_tag="RCA_00090"
/note="F0F1 ATP synthase subunit C; Validated; Region:
PRK07558"
/db_xref="CDD:181027"
gene complement(23266..23994)
/locus_tag="RCA_00095"
/db_xref="GeneID:11860333"
CDS complement(23266..23994)
/locus_tag="RCA_00095"
/EC_number="3.6.3.14"
/note="COG0356 F0F1-type ATP synthase, subunit a"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit A"
/protein_id="YP_005299084.1"
/db_xref="GI:379022423"
/db_xref="GeneID:11860333"
/translation="MTLNPLVQFDIKKLIEIKIFGFDISFTNSSIYMLLASILALTYF
YLAFYNWKLVPSRLQVSAEIVYNLVADMLNQNIGTKGHKFIPLFFSLFIFILFCNLLG
MTPYSFTVTSHIIVTFALAILVFLTITIVGFVKHSLRFLTLFLPHGTPLWLAPLMIVI
ELFTYLARPISLSLRLAANMMAGHVLLKVIASFTISLMIYLKFISIPLMVILIGFEIF
IAVLQAYIFTILSCMYLNDAINLH"
misc_feature complement(23278..23925)
/locus_tag="RCA_00095"
/note="ATP synthase subunit 6 (eukaryotes),also subunit A
(prokaryotes); Region: ATP_synt_6_or_A; TIGR01131"
/db_xref="CDD:162216"
gene complement(23999..24262)
/locus_tag="RCA_00100"
/db_xref="GeneID:11860334"
CDS complement(23999..24262)
/locus_tag="RCA_00100"
/note="COG5336 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299085.1"
/db_xref="GI:379022424"
/db_xref="GeneID:11860334"
/translation="MDTEKLNNIKARIKDFKSARLFNPKVQQEISSFTIAIDLVSGTM
VGVASGIFTDKLFYSKPLFLIIFTIIGMIAGFNIIRQKVNNKK"
misc_feature complement(24002..24262)
/locus_tag="RCA_00100"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5336"
/db_xref="CDD:34913"
gene complement(24434..25258)
/locus_tag="RCA_00105"
/db_xref="GeneID:11860335"
CDS complement(24434..25258)
/locus_tag="RCA_00105"
/note="COG1651 Protein-disulfide isomerase"
/codon_start=1
/transl_table=11
/product="protein-disulfide isomerase"
/protein_id="YP_005299086.1"
/db_xref="GI:379022425"
/db_xref="GeneID:11860335"
/translation="MQSIFIVLIFLLFLSSYSDGKVQGKNHEEKQIIEQKTVQNNETS
QKINQEAINSENAAESIVPANDNNQTNEVSTPDSQEHKDPKIKPIKVTFKVDDNDMVL
GNKKSNVIVIEYFSPTCPHCAYYHQTIFPELKKKYIDTNKIAYVVREFIATKQDLDAA
ILARCKGDINSFVQFHNIILKQQDKWAYSNKYRELLTDIGKLGGISPEEYKQCLNSDK
ITETLIANTNFVAKTPKFIGTPSFFVNGVQTKNYSIDNIAKAVDKALDEQKEKAKK"
misc_feature complement(24461..25069)
/locus_tag="RCA_00105"
/note="Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones]; Region: DsbG;
COG1651"
/db_xref="CDD:31837"
misc_feature complement(24470..24973)
/locus_tag="RCA_00105"
/note="Thioredoxin; Region: Thioredoxin_4; pfam13462"
/db_xref="CDD:205640"
gene 25425..25952
/locus_tag="RCA_00110"
/db_xref="GeneID:11860336"
CDS 25425..25952
/locus_tag="RCA_00110"
/note="COG1329 Transcriptional regulators, similar to M.
xanthus CarD"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299087.1"
/db_xref="GI:379022426"
/db_xref="GeneID:11860336"
/translation="MANTTQSEHKTKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEI
KVYVISFAQDKMTLKVPVNRAAIVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQ
EYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTE
AINKLVEVLREKLVA"
misc_feature 25455..25949
/locus_tag="RCA_00110"
/note="Transcriptional regulators, similar to M. xanthus
CarD [Transcription]; Region: COG1329"
/db_xref="CDD:31520"
gene complement(26163..27767)
/locus_tag="RCA_00115"
/db_xref="GeneID:11860337"
CDS complement(26163..27767)
/locus_tag="RCA_00115"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit A"
/protein_id="YP_005299088.1"
/db_xref="GI:379022427"
/db_xref="GeneID:11860337"
/translation="MTKQTNKISYDEVPYPPFTFSYTSPPYLRTIGKLFGLNPPSLET
AKILDIGCGVGVNLLNFAETYPKSNSLGIDLSKTQIELGKKIISDLKIKNVELNALSI
LDLNESYGKFDYIVCHGVYSWVPEEVQNKILEVCNKLLNPNGIAFVSYNTLPGWNMQR
TIREMMMFHSELFNNSHDKLQQARLLLKFINDSLESATTPYSRFLRDETKLLSAYTDS
YVLHEYLGEINTGIYFNQFIEKAQRNHLNYLGDASLASMFIGNLPAQAAEKLQVIDDI
VRTEQYMDFITNRKFRSTLLCHKNIPINRKIEFNNLKEFYTSLNIKPVTLEQEVDLTN
EQENISFYYENLPNPLISSTSPIIKAILYVYAENISNPLSLEQVAKEALKKLGKYRLQ
DFLAALEQHFIKFIFQGYLKIFETKPHTITTITEKPKTGEFARYQARQAHFNNATNVF
SITNRLNDMIGIALHEKYILEMLDGTHNINDIKKEILEKINSKLLTARDDKGQEVTDP
KLLKEFIDYIVTASLEKFRMNYLLVG"
misc_feature complement(<27318..27641)
/locus_tag="RCA_00115"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature complement(27318..27632)
/locus_tag="RCA_00115"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(27414..27416,27462..27470,27543..27548,
27600..27620))
/locus_tag="RCA_00115"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
misc_feature complement(26175..27017)
/locus_tag="RCA_00115"
/note="Predicted regulatory domain of a methyltransferase
[General function prediction only]; Region: COG4797"
/db_xref="CDD:34406"
gene complement(28491..29573)
/gene="recF"
/locus_tag="RCA_00120"
/db_xref="GeneID:11860338"
CDS complement(28491..29573)
/gene="recF"
/locus_tag="RCA_00120"
/note="COG1195 Recombinational DNA repair ATPase (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_005299089.1"
/db_xref="GI:379022428"
/db_xref="GeneID:11860338"
/translation="MKNIFLHSLILENYRNFKNLELKIDNTPIILIGENGSGKTNILE
AISLFYPGRGLRSAKLADICKTSEDHCSIKALLQSKLGLAEFTTQFKLSSNRRITEYN
ESKIANNELSKFTSMVWLTPQMEGIFTSGKVERRKFLDRIVYNFDPKHAELVSKYEYY
MHERNKILAEEIQDDNWLKIIEEKMADISNHIAVNRLKTLEFMQQTINNLENEFPKAD
LSIDGIVEQKILDGEENIVSVITAELYKTRNKDKLIGRTSFGVHKSDFLVKHKKKNIL
AKLCSTGEQKAILITIILAEMNYAIKLTKIAPVLLLDEVFVHLDDKRREYLTEFFTYL
NLQLWITTTNLESIENFASKAQLIKL"
misc_feature complement(28494..29561)
/gene="recF"
/locus_tag="RCA_00120"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature complement(<29001..29558)
/gene="recF"
/locus_tag="RCA_00120"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(29454..29477)
/gene="recF"
/locus_tag="RCA_00120"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(29208..29210,29451..29459,29463..29468))
/gene="recF"
/locus_tag="RCA_00120"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(29208..29219)
/gene="recF"
/locus_tag="RCA_00120"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(28500..>28796)
/gene="recF"
/locus_tag="RCA_00120"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(28707..28736)
/gene="recF"
/locus_tag="RCA_00120"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(28632..28649)
/gene="recF"
/locus_tag="RCA_00120"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(28614..28625)
/gene="recF"
/locus_tag="RCA_00120"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(28536..28556)
/gene="recF"
/locus_tag="RCA_00120"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(29598..30266)
/locus_tag="RCA_00125"
/db_xref="GeneID:11860339"
CDS complement(29598..30266)
/locus_tag="RCA_00125"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_005299090.1"
/db_xref="GI:379022429"
/db_xref="GeneID:11860339"
/translation="MTNNHFSEDTKKIANQIKDALMGISDDLVLESKEVEEIFEELSQ
NEKFEYEIEQMLAILNEQTMDLTQLQSRIILLIRKYLGKTKNLKLKMLKVDEKLINKN
VAEVSNYLMHQHSKIVRDANKNLAKPKDKLQGLTKQARIDLKRLLKSFAVYQIYMFMN
PKRIAGETKLMNFAYNMIRGGMKLAKKYEGGKEKDIKSYSPKLIKKLKKTYAGFKKSG
GISI"
gene complement(30390..30479)
/locus_tag="RCA_00130"
/db_xref="GeneID:11860340"
CDS complement(30390..30479)
/locus_tag="RCA_00130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299091.1"
/db_xref="GI:379022430"
/db_xref="GeneID:11860340"
/translation="MIGEESEDKYHSWNIATFSKENVDFLGNY"
gene complement(31874..32443)
/locus_tag="RCA_00135"
/db_xref="GeneID:11860341"
CDS complement(31874..32443)
/locus_tag="RCA_00135"
/note="COG1678 Putative transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299092.1"
/db_xref="GI:379022431"
/db_xref="GeneID:11860341"
/translation="MSDKIFHNLSGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGL
IFNRLVNHIDLKSFFKIKNDEITNPVMVPIYLGGPVEHEKGFFLHSSDYNKNLLLDFH
NDLAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKSGQLEEELEKNLWLVMDCNKEFIF
ADNPESKWHNALKHLGIDEIHFSSQIGNA"
misc_feature complement(31877..32443)
/locus_tag="RCA_00135"
/note="Putative transcriptional regulator [Transcription];
Region: COG1678"
/db_xref="CDD:31864"
gene 32515..33153
/locus_tag="RCA_00140"
/db_xref="GeneID:11860342"
CDS 32515..33153
/locus_tag="RCA_00140"
/note="COG1286 Uncharacterized membrane protein, required
for colicin V production"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299093.1"
/db_xref="GI:379022432"
/db_xref="GeneID:11860342"
/translation="MITFFDVTIFAIITIFSFFGLYQGIIGFSTRILGFITSIMLAYF
LYPYISELIRKYMDNEVIRIIIVGVISYVISLILCVFIVYKFLTIISFMRNGFIDRFL
GLLVGFAIGVTISVVLFFITMIFTSENYFKSKSLKDFIVSSKQHKYSGVLKVSVTTDY
LDELSKNIIVIIPNETLKSIEIFENRDLNNFKNSLKKSNDSNDDEDVFSQEL"
misc_feature 32518..33072
/locus_tag="RCA_00140"
/note="Uncharacterized membrane protein, required for
colicin V production [General function prediction only];
Region: CvpA; COG1286"
/db_xref="CDD:31477"
misc_feature 32572..32913
/locus_tag="RCA_00140"
/note="Colicin V production protein; Region: Colicin_V;
pfam02674"
/db_xref="CDD:202343"
gene 33561..33674
/locus_tag="RCA_00145"
/db_xref="GeneID:11860343"
CDS 33561..33674
/locus_tag="RCA_00145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299094.1"
/db_xref="GI:379022433"
/db_xref="GeneID:11860343"
/translation="MWNHGSLQHNGGNYAQQNGDNIILTENRQNINFDTKY"
gene complement(33955..35277)
/locus_tag="RCA_00150"
/db_xref="GeneID:11860344"
CDS complement(33955..35277)
/locus_tag="RCA_00150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299095.1"
/db_xref="GI:379022434"
/db_xref="GeneID:11860344"
/translation="MTSIYHILEHVPAIYKQDMEIEYEHLAMQLIKSGKLRIDTDDCC
NFARFTDPALNISLMVSKEELTNPHLIPETTKLFQSLYRNSLSDQKIKSIFENLKKQI
QKLQPVKKEVTEMLARIFVQSAHPIVIRWLLLNKTEVFLTYSHNIGNMMDMVNWQRVG
ANSGMQSTNGKNVAIFVSCGGNPFAENNKDHPTYGNGFAAVARLQIIAAQELGHFADI
KRDDRGKQITRHSANFSGTKAKDKVRIARRNDIIHCHNLLYKLLKAGMKKQLEYEMKL
KFYNANKISGLKVYAIKFMIFIYKFRLLNYSSRHNLIFVKKFKTDKYMALMIDAMFKD
MQANLSPAADVYKNKNPEIEEAIACIEALARVPQQTIKWGYLTTKETMQDLYKIYYND
VIPSLITSYNAVTGEDYKRDFKKPKSNFFSKINIFSNKKLVLKPVREL"
misc_feature complement(33958..35277)
/locus_tag="RCA_00150"
/note="Protein of unknown function (DUF2748); Region:
DUF2748; pfam10871"
/db_xref="CDD:151320"
gene 37617..40193
/locus_tag="RCA_00155"
/db_xref="GeneID:11860345"
CDS 37617..40193
/locus_tag="RCA_00155"
/note="COG0542 ATPases with chaperone activity,
ATP-binding subunit"
/codon_start=1
/transl_table=11
/product="clpB protein"
/protein_id="YP_005299096.1"
/db_xref="GI:379022435"
/db_xref="GeneID:11860345"
/translation="MNIDKFTAHAKLVIASSQSLAAKNDHQQILSLHLLSSLLSEETG
IIRSIINNVGSDLNIIHTQVKTELNKIPQVQVAGGGQVYSSAEALKALEKASSLAKDS
GDSFVTIERILEALTYDNTIAGKILTNNGVSSKKVAASILQIRKGKKADTVSAENSYD
ALKKYGRDVTELAERCTLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIE
GLAQRIFSKDVPESLMNCRIIELDMGALIAGAKYRGEFEERLKAVLSEIKESSGEIIL
FIDELHLLVGTGKTDGAMDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRF
QPVYVSEPTVEDTISILRGIKEKYELHHAVQISDSAIVAAAMLSNRYITDRYLPDKAI
DLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKENEDHSKKKITHLTEELK
KLESKSYDMNAKWQAEKSKLQQAQKLKEELERARIDLERAERDANLAKASELKYGIIP
EIMKKIQEAESMDNKGLLKEIVSDSDIASIISRITGIPIDTMLSSERERLLVMEQKLR
ESVIGQDKAIKSVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAAFLFDD
RNAILRVDMSEYMEKHTISRLIGAPPGYIGYDQGGILTEAVRRRPYQVILFDEVEKAH
TDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKEGEDSDKVKDEV
MEYVRAVFKPEFLNRLDEIILFHRLSRNNIHDIVKIQLESLKKILLAQNITLEFEESA
LNYLAEKGYDPSFGARPLKRLIQREIQNNLAKLILAGAISSGKTVKISREKEELRIKL
VN"
misc_feature 37632..40172
/locus_tag="RCA_00155"
/note="ATP-dependent chaperone ClpB; Region:
chaperone_ClpB; TIGR03346"
/db_xref="CDD:163223"
misc_feature 37923..38054
/locus_tag="RCA_00155"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 38160..38621
/locus_tag="RCA_00155"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 38235..38258
/locus_tag="RCA_00155"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(38238..38261,38451..38453,38562..38564)
/locus_tag="RCA_00155"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 38439..38456
/locus_tag="RCA_00155"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 38613..38615
/locus_tag="RCA_00155"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature <38859..>39104
/locus_tag="RCA_00155"
/note="Protein of unknown function (DUF1640); Region:
DUF1640; pfam07798"
/db_xref="CDD:191851"
misc_feature 39324..39770
/locus_tag="RCA_00155"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 39426..39449
/locus_tag="RCA_00155"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(39429..39452,39642..39644,39768..39770)
/locus_tag="RCA_00155"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 39630..39647
/locus_tag="RCA_00155"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 39909..40151
/locus_tag="RCA_00155"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene complement(40333..40821)
/locus_tag="RCA_00160"
/db_xref="GeneID:11860346"
CDS complement(40333..40821)
/locus_tag="RCA_00160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299097.1"
/db_xref="GI:379022436"
/db_xref="GeneID:11860346"
/translation="MSNNNYDNIYKAFNCFSEATNSAYSAVNNFLELPNVFRKYPTII
SLIFSKTAKLDSNITNIIKNSVIIYEISTTLIGAVNTFYNDKKLVDKILKDGQNAVNK
LIETTNYLSPIVTDITNSYLVDLYKEEKAPLFDLQIPNSTSSDYYKFSGEVINSAEIE
SY"
gene complement(41013..42041)
/locus_tag="RCA_00165"
/db_xref="GeneID:11860347"
CDS complement(41013..42041)
/locus_tag="RCA_00165"
/note="COG0533 Metal-dependent proteases with possible
chaperone activity"
/codon_start=1
/transl_table=11
/product="UGMP family protein"
/protein_id="YP_005299098.1"
/db_xref="GI:379022437"
/db_xref="GeneID:11860347"
/translation="MTKILGIESSCDDTAVSIITENREILSNIIISQNTEHAVFGGVV
PEIAARSHLSNLDKALKSVLKESDTKLTEISAIAATSGPGLIGGVIVGSMFARSLSSA
LKKPFIAINHLEGHALTARLTDNIPYPYLLLLASGGHCQFVAILGLRKYKILGSTIDD
AVGEAFDKVAKMLNLGFPGGSKIEKRAKFGNSHKYKFPKPIINSGNCNMSFSGLKTAV
RTLIMSLKEINDTVVNDIAASFQFTIGEILSSKLQDAIRAYEQMINNCDKKNIVIAGG
VAANKYLQEILSSVAKTYGYQLIYPPIHLCTDNAAMIAYAGLERYNNKLFTPLNFCPK
ARWNLEEI"
misc_feature complement(41016..42038)
/locus_tag="RCA_00165"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature complement(41454..42035)
/locus_tag="RCA_00165"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene complement(42047..43240)
/locus_tag="RCA_00170"
/db_xref="GeneID:11860348"
CDS complement(42047..43240)
/locus_tag="RCA_00170"
/note="COG1398 Fatty-acid desaturase"
/codon_start=1
/transl_table=11
/product="O-sialoglycoprotein endopeptidase"
/protein_id="YP_005299099.1"
/db_xref="GI:379022438"
/db_xref="GeneID:11860348"
/translation="MLSKLNKPALFSLIFYPIFIISLIVKYLFDYGIGLAEVIFIVAS
YYINNITVGIGLHRLWSHNSYKINKYAEFILVMLSAGTLQGPALSWASNHYKHHTFTD
KDQDPHTPLKFDNKFLGFMWSHIGWMLVGTGSYKSIDRITWAKHRKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVGGTMQSAYAGFLFMGLGRFLQQQATFCVNSLCHFVGSKKY
YKGTAGDIWWMSLFLLGENWHNYHHAFPSDYRNGAKWYHFDVHKWIIFLMSKVGLASE
LERTTKVRIQAKMQETLSYLSEKQKQKLSLMQTKIDQLLENLCLKIKELEESSITIKA
QFKKSFVEIQESLKNLAEQISSATQITEKSSEKLLKIVNKKIIDAEQSIYKLYNQLNT
FKVSN"
misc_feature complement(<42848..43141)
/locus_tag="RCA_00170"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
misc_feature complement(42452..43093)
/locus_tag="RCA_00170"
/note="Fatty acid desaturase; Region: FA_desaturase;
pfam00487"
/db_xref="CDD:201259"
misc_feature complement(order(42947..42952,42959..42961,43055..43057,
43070..43072))
/locus_tag="RCA_00170"
/note="Di-iron ligands [ion binding]; other site"
/db_xref="CDD:58171"
misc_feature complement(42410..>42691)
/locus_tag="RCA_00170"
/note="The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like
CD includes the delta-9 and delta-11 acyl CoA desaturases
found in various eukaryotes including vertebrates,
insects, higher plants, and fungi. The delta-9 acyl-lipid
desaturases are found in a wide...; Region:
Delta9-FADS-like; cd03505"
/db_xref="CDD:58171"
misc_feature complement(<42050..42397)
/locus_tag="RCA_00170"
/note="Protein of unknown function (DUF713); Region:
DUF713; pfam05218"
/db_xref="CDD:203210"
gene 43973..44338
/gene="rpsF"
/locus_tag="RCA_00175"
/db_xref="GeneID:11860349"
CDS 43973..44338
/gene="rpsF"
/locus_tag="RCA_00175"
/note="COG0360 Ribosomal protein S6"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S6"
/protein_id="YP_005299100.1"
/db_xref="GI:379022439"
/db_xref="GeneID:11860349"
/translation="MSFYESVFIIRQDISLNDIDKIVDDFAKIIKDNNGTIIKKEYWG
LRTLAYKIGSNKKGHYYFLGLDITPNVKEEIERKMKLNENIIRFLTIKADAISSEPSP
MLKNQSTENNLVIDVTINN"
misc_feature 43973..44296
/gene="rpsF"
/locus_tag="RCA_00175"
/note="30S ribosomal protein S6; Reviewed; Region: rpsF;
PRK00453"
/db_xref="CDD:179034"
gene 44363..44650
/gene="rpsR"
/locus_tag="RCA_00180"
/db_xref="GeneID:11860350"
CDS 44363..44650
/gene="rpsR"
/locus_tag="RCA_00180"
/note="COG0238 Ribosomal protein S18"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S18"
/protein_id="YP_005299101.1"
/db_xref="GI:379022440"
/db_xref="GeneID:11860350"
/translation="MLKSNNTSEATTRKVGDKTAKKVFFRRRKGCPLSVPNAPVIDYK
NPELLIKFVSEGGRMLPSRITNVCAKKQRKLNNAIKIARILALLPFVFQAK"
misc_feature 44408..44635
/gene="rpsR"
/locus_tag="RCA_00180"
/note="30S ribosomal protein S18; Reviewed; Region: rpsR;
PRK00391"
/db_xref="CDD:178997"
gene 44662..45177
/gene="rplI"
/locus_tag="RCA_00185"
/db_xref="GeneID:11860351"
CDS 44662..45177
/gene="rplI"
/locus_tag="RCA_00185"
/note="COG0359 Ribosomal protein L9"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_005299102.1"
/db_xref="GI:379022441"
/db_xref="GeneID:11860351"
/translation="MEIILIKPVRKLGKIGDILKVADGFGRNYLLPQKLAIRATEPNK
ELIVKQKHEFEAKDKQIREEVEKINALIKEQKLVFIRQTSDDGKLFGSITNKEIADKL
SENVSYNIFHSNIILDKKIKSTGIYTVEIRLHAELNAIVTVIVARSESEVQDYLREQK
NESLETLAESA"
misc_feature 44662..45105
/gene="rplI"
/locus_tag="RCA_00185"
/note="50S ribosomal protein L9; Reviewed; Region: rplI;
PRK00137"
/db_xref="CDD:178893"
misc_feature 44662..44802
/gene="rplI"
/locus_tag="RCA_00185"
/note="Ribosomal protein L9, N-terminal domain; Region:
Ribosomal_L9_N; pfam01281"
/db_xref="CDD:201708"
misc_feature 44845..45105
/gene="rplI"
/locus_tag="RCA_00185"
/note="Ribosomal protein L9, C-terminal domain; Region:
Ribosomal_L9_C; pfam03948"
/db_xref="CDD:146531"
gene 45680..46978
/locus_tag="RCA_00190"
/db_xref="GeneID:11860352"
CDS 45680..46978
/locus_tag="RCA_00190"
/note="COG0037 Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthetase TilS"
/protein_id="YP_005299103.1"
/db_xref="GI:379022442"
/db_xref="GeneID:11860352"
/translation="MASIYEKFEYNINNLIGDFALSRIAVAVSGGSDSVALLYLTNVW
AKKNNIELFVISVDHNLREQSKQETHYIQNISNSLNRKHYNLSFDHQNNFSNLQERAR
EGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRLERNSGIFGLSSSNINWHNNIQI
VRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKYKRNLVRQKLAKEEDYIKADIILQQ
LKINNLLDDKFKPELISAIAEAVKIFEYGFAFLDLIKFDKFSNEVKVQLINFLLIIIS
GQSRVARFYSVSPILELITQDINFKNTLHGCVIKRIQNELLIYREFGKKLPKSQILLD
KSIIWDSRFHIIKNQETPNCFVTHLSLEDYKTIKKQLDLEPLKNLSCKNHNAILFTLP
VVKILEKVIAIPHISYYDHDMRNFGVSFAPNFVSRFTHFC"
misc_feature 45689..>46306
/locus_tag="RCA_00190"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:30386"
misc_feature 45746..46288
/locus_tag="RCA_00190"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature order(45758..45766,45770..45781,45845..45847,45851..45853)
/locus_tag="RCA_00190"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
gene 47068..48978
/locus_tag="RCA_00195"
/db_xref="GeneID:11860353"
CDS 47068..48978
/locus_tag="RCA_00195"
/note="COG0465 ATP-dependent Zn proteases"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L9"
/protein_id="YP_005299104.1"
/db_xref="GI:379022443"
/db_xref="GeneID:11860353"
/translation="MNNQGRSILAWAVLFVFVILLFNVFQSDGLLGGRNNITFSDFLT
RVDEKTVNSVKIQGRVIEGTSNDGSTFSTYSPDYPDLVNRLTSNDVNIEVVPLETRMN
TFLGFLISWFPMLLLIGVWVFFMRQMHGGGKVLGFGKSKARLLLSDKGPKITFKDVAG
IDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFF
SISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDERE
QTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQI
LKVHLKKIKYNNTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEA
KDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMV
QRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMV
TKAGLSDLIGPIFHGSSSDDMYGRQSNNETSEATAELIDSEVKRIIMQGYKFAKDILT
KHIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEEENKFPFNDSSTIKIDKEKSPE
KAKTTKAKKEST"
misc_feature <47161..47355
/locus_tag="RCA_00195"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:203464"
misc_feature 47374..48852
/locus_tag="RCA_00195"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature 47542..48030
/locus_tag="RCA_00195"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 47653..47676
/locus_tag="RCA_00195"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(47656..47679,47830..47832,47971..47973)
/locus_tag="RCA_00195"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 47818..47835
/locus_tag="RCA_00195"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 48013..48015
/locus_tag="RCA_00195"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 48220..48846
/locus_tag="RCA_00195"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 48979..49764
/gene="sdhB"
/locus_tag="RCA_00200"
/db_xref="GeneID:11860354"
CDS 48979..49764
/gene="sdhB"
/locus_tag="RCA_00200"
/EC_number="1.3.99.1"
/note="COG0479 Succinate dehydrogenase/fumarate reductase,
Fe-S protein subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_005299105.1"
/db_xref="GI:379022444"
/db_xref="GeneID:11860354"
/translation="MAELRLPPNSVVEKGREHKENEEMLRPRKIKIYRYNPDLDENPT
IDSFEIDLSKTGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIK
PIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPAPSNSERLQSIK
DRENLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIVDSRDDHTGERLEA
LEDPFKLYRCHTIMNCTKTCPKSLNPAKAIGEIKSLITERRGV"
misc_feature 49063..49755
/gene="sdhB"
/locus_tag="RCA_00200"
/note="succinate dehydrogenase iron-sulfur subunit;
Reviewed; Region: sdhB; PRK05950"
/db_xref="CDD:180322"
misc_feature 49063..49377
/gene="sdhB"
/locus_tag="RCA_00200"
/note="2Fe-2S iron-sulfur cluster binding domain; Region:
Fer2_3; pfam13085"
/db_xref="CDD:205266"
gene complement(50835..51911)
/locus_tag="RCA_00205"
/db_xref="GeneID:11860355"
CDS complement(50835..51911)
/locus_tag="RCA_00205"
/note="COG1565 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase iron-sulfur subunit"
/protein_id="YP_005299106.1"
/db_xref="GI:379022445"
/db_xref="GeneID:11860355"
/translation="MSVDSKIRQLINQNGYITCDVLIQEILYSNPASYYKQTKSLASE
GDFITAPEVSQLFGEIIGLWCIKEWQRIGCPKSLSLVELGPGRGLLMRDLLRTAKLVP
EFYKALSIELIEINQNFIAHQKSNLQDINLPIKHLSFIEDIPKKPTIIVANEFFDAMP
IKQYIKVKELWYERIFVVQPVDGRIKYDKISVNKQLQEYLLQTHIEAKDGAVLEESYK
SIEIIKFIAQHLKKLSGSCLIIDYGYDIDLSNRNRYQYNPTLQAVKNHKYCPILENCG
KADLSAHVDFYTLKTVAKNSKINVINTILQRDFLIENGILLRSKTLQDKLNNEQAQII
EKQVERLISPKQMGVLFKVLQIMN"
misc_feature complement(50838..51911)
/locus_tag="RCA_00205"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(51027..51731)
/locus_tag="RCA_00205"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene complement(51890..52669)
/locus_tag="RCA_00210"
/db_xref="GeneID:11860356"
CDS complement(51890..52669)
/locus_tag="RCA_00210"
/EC_number="2.4.99.-"
/note="COG0682 Prolipoprotein diacylglyceryltransferase"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_005299107.1"
/db_xref="GI:379022446"
/db_xref="GeneID:11860356"
/translation="MIFPNINPVIFSIGPFAISWYSLSYVIGILLGWFYANKIIEKFK
PQITKKNLEDFITYAVIGIIVGGRLGFVLLYNPSRYFSNPIDILKTYEGGMSFHGGAL
GVIIAAYLFCRKYKVNFLSLTDIIAPVVPIGLFLGRIANFINGELYGRITNSSFGIIF
PNSDLSPRHPSQLYEAFFEGLVLFCILAYATFKHKTLEKRALNLGLFLTFYALFRITI
EIFREPDMQIGFILDSLTMGQILSIPMLILGSSLICQSTLK"
misc_feature complement(51911..52669)
/locus_tag="RCA_00210"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK00052"
/db_xref="CDD:178826"
gene 52936..54102
/locus_tag="RCA_00215"
/db_xref="GeneID:11860357"
CDS 52936..54102
/locus_tag="RCA_00215"
/note="COG0668 Small-conductance mechanosensitive channel"
/codon_start=1
/transl_table=11
/product="putative carbamate kinase"
/protein_id="YP_005299108.1"
/db_xref="GI:379022447"
/db_xref="GeneID:11860357"
/translation="MQYLMDLYYISSTELVLLFVMLVTLIPVIFLIKRLIFIPVKNYL
TRHHYDDYERIIKKYPIFRYLLHTLLAFYFVCWGNIFHPNSFKAHVLLGIKDTIVILY
TSISMTMLLLTLIDAFADLYHNRIKTVTKNVPLSLYFQILKIIVMVIAVMITISYILN
ISLSTFLTSLGAATALLTFVFKDTVLGLLASLQLTTQEIINIGDWVRIGKIEGIVEKI
TISVVTIRNFDQSISTVPTYSILNSTVTNYRGISESGARRVKRVFNINMTTIHFCDAT
ILKELKKSPYLSKDIINKITLDKEEKDLTNIKLFKLYVQEYLKNNPAVYTEGFTFLVR
QLEPTIYGLPIEIYIFVKEVNLVGYENIQDDISEHLISILSEFKLKIFQNVAVV"
misc_feature <53473..54087
/locus_tag="RCA_00215"
/note="Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane]; Region: MscS;
COG0668"
/db_xref="CDD:31012"
misc_feature 53473..54054
/locus_tag="RCA_00215"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 54292..55974
/locus_tag="RCA_00220"
/db_xref="GeneID:11860358"
CDS 54292..55974
/locus_tag="RCA_00220"
/note="COG0706 Preprotein translocase subunit YidC"
/codon_start=1
/transl_table=11
/product="membrane protein insertase"
/protein_id="YP_005299109.1"
/db_xref="GI:379022448"
/db_xref="GeneID:11860358"
/translation="MNNNIMNLIAAIVLSLSIIFGWQYFVVKPEHKKQQQQIAMQKAE
NLKKQKLKALIEPASDLIVQEANQVQRIKIESESLTGSISLKGLRFDDLILKKYKQDL
SKNSTEVRLFSPANTENAYFAEIGLVSNLSSVKLPNNDTIWNSDSEILSPEKPVNLFW
VNEDGVKFLVTITVDENYLFTVEQTIVNNSDKELPVQSYGLINRKYIAVEKAVNILHQ
GPIGCINENLKEYSYDDIKDKKSEKFVASKVDWIGMTDKYWLSSLIPDKSSNYSSNFN
YSVKQGVERYQVDFISPVQIIKSGENFSITSRIFAGAKKVDLLDKYEKQYGIKLFDRA
IDFGWFYVITKPVFYAMNFFYGYVGNFGISILIVTVIIKLLMFTLANKSYCSMKKMKN
LQPEIDRIKNLYGDDKARLNQEIMALYKKEKVNPVAGCLPILVQIPVFFSIYKVLYVT
IEMRQAPFYGWIKDLSAPDPTTIFNLFGFLPFSPPSFLMIGAWPILMAITMFLQQRMS
PEPADPVQAQVMKFMPLIFLVMFSSFPVGLLIYWSWNNILSIIQQYYINKFN"
misc_feature 54481..55971
/locus_tag="RCA_00220"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature 55369..55965
/locus_tag="RCA_00220"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene 55974..56519
/locus_tag="RCA_00225"
/db_xref="GeneID:11860359"
CDS 55974..56519
/locus_tag="RCA_00225"
/note="COG0558 Phosphatidylglycerophosphate synthase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="YP_005299110.1"
/db_xref="GI:379022449"
/db_xref="GeneID:11860359"
/translation="MRIDKNLPNYLTVARVMVIPMIILAFYINNSLARTFGALLFVLA
SITDFFDGYIARKYNLVTSFGKMFDPIADKLLVGCVIIMLLKKDNVDEIPCLLILARE
FLVSGLREFLALVKVSVPVSRLAKVKTFLQMFALSILILGSKGSGIIYLDIVGEIILW
IAAFLTIITGYSYFKACKKYF"
misc_feature 55986..56495
/locus_tag="RCA_00225"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 56770..56898
/locus_tag="RCA_00230"
/db_xref="GeneID:11860360"
CDS 56770..56898
/locus_tag="RCA_00230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299111.1"
/db_xref="GI:379022450"
/db_xref="GeneID:11860360"
/translation="MKQLGLEDTFYKVSLPDASRLVLVNEKYTHCRKIIEDTIEIL"
gene complement(57325..57723)
/locus_tag="RCA_00235"
/db_xref="GeneID:11860361"
CDS complement(57325..57723)
/locus_tag="RCA_00235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299112.1"
/db_xref="GI:379022451"
/db_xref="GeneID:11860361"
/translation="MTQKIIKNIIFGIAFLLSTISFANSVTSNGSKKDAAKTNDVTTQ
KIIDAFSAYAGTIKPEVREEIQKYRVKIVNINKEKRKLYNSLSKEAQNFLAEQQKYKQ
KLSLSKLTVENNDRKNNAVNSNDKQDKDTK"
gene 58785..60290
/locus_tag="RCA_00240"
/db_xref="GeneID:11860362"
CDS 58785..60290
/locus_tag="RCA_00240"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_005299113.1"
/db_xref="GI:379022452"
/db_xref="GeneID:11860362"
/translation="MSTTKSDNYLSELRKIIWPIERYENKKFLPMAFMMFCILLNYST
LRSIKDGFVVTDIGAEAISFLKTYIVLPSAVIAMVIYVKLCDILKQENVFYVITSFFL
GYFVLFAFVLYPYPDLVHPDPETIEHLSLAYPNFKWFIRIVGKWSFASFYTMAELWGT
MILSLLFWQFANQITKTDEAKRFYSMFGLLANLALPVASVIIGYFLHEETQIVAEHLK
FVPLFIIMITSSFSIILTYRWMNKNVLTDPLLYDPALVKEKKSKAKMSLLDSFKMIFM
SKYVGYIALLLIAYGISVNLVEGVWKSKVKELYPTKEAYTMYMGRFQFYQGWVAIAFM
IVGSNILRKVSWLIAAMITPLMMLLTGAAFFAFIFFDSVIAMYLTGILASGPLALSVI
IGMIQNVLSKGVKYSLFDATKNMAYIPLDKDLRVKGQAAVEVIGGRFGKSGGAIIQST
FFILFPAFGFVEATPYFASIFFVIVILWIYAVRSLNKEYQVLVNKTDNRIC"
misc_feature 58791..60251
/locus_tag="RCA_00240"
/note="TLC ATP/ADP transporter; Region: TLC; pfam03219"
/db_xref="CDD:146045"
misc_feature 58842..60251
/locus_tag="RCA_00240"
/note="ADP/ATP carrier protein family; Region: AAA;
TIGR00769"
/db_xref="CDD:162032"
gene 60357..61646
/locus_tag="RCA_00245"
/db_xref="GeneID:11860363"
CDS 60357..61646
/locus_tag="RCA_00245"
/note="COG2271 Sugar phosphate permease"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_005299114.1"
/db_xref="GI:379022453"
/db_xref="GeneID:11860363"
/translation="MTNTKSKIKTPRSPYVKKYNSWRVRILYSIIIGYATFYFCRQNF
NIATPAIRAYFGVTKTQIGWILTASSIMYGVSKVCNGFISDKVNARIFMVLGLLLVGI
ITILIGLSDFLWLIGILWIASNWFQSMGWPPATKMLTHWFAPKELGTKWAMGATSNQI
GGALAMVSCGYLIDKFDWRAAFFVPGVVACIVSLFLYNRLRSSPKEVGLSTVEEYKEY
PPESIGDYEKLLTTQLLKMVFCNKLIWYVCLANMFVYIIRSGVIYWAPTFLRDLRNIS
LANAGLQIGLYEMIGIPGALIAGVLSDKLFQGRRGPVAAICMISLSLLLVLFWKIPVQ
SELLSIVILSLIGFFVSGPQLLVGIAAADFSSRQAVGTANGLSGLFGYLGAAIAGVGV
GWISDNYGWNGVFTFFSVSALLGGGLFTLTWNRSAKK"
misc_feature 60357..61643
/locus_tag="RCA_00245"
/note="Sugar phosphate permease [Carbohydrate transport
and metabolism]; Region: UhpC; COG2271"
/db_xref="CDD:32452"
misc_feature 60435..61625
/locus_tag="RCA_00245"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(60477..60479,60486..60494,60498..60503,60552..60554,
60561..60566,60573..60575,60585..60590,60594..60599,
60735..60740,60747..60752,60759..60764,60771..60773,
60807..60812,60819..60824,60840..60842,61119..61121,
61128..61133,61140..61145,61152..61154,61194..61196,
61206..61208,61218..61220,61227..61229,61239..61241,
61395..61397,61404..61409,61416..61418,61428..61433,
61440..61442,61473..61478,61485..61490,61497..61502,
61509..61511)
/locus_tag="RCA_00245"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 61665..62087
/gene="ndk"
/locus_tag="RCA_00250"
/db_xref="GeneID:11860364"
CDS 61665..62087
/gene="ndk"
/locus_tag="RCA_00250"
/EC_number="2.7.4.6"
/note="COG0105 Nucleoside diphosphate kinase"
/codon_start=1
/transl_table=11
/product="mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-phosphodiesterase"
/protein_id="YP_005299115.1"
/db_xref="GI:379022454"
/db_xref="GeneID:11860364"
/translation="MTIQYTFSMIKPDAIKRNKIGQINTYLENAGLKIVAQKMKYLTK
YEAECFYDEHRARPFFNSLVEYITSGAVVLQVLKGTDAITLNRKIMGATNPDEAEAGT
IRKDFGESIEANSIHGSDSQNSAKREIEFFFNKSEIIE"
misc_feature 61674..62063
/gene="ndk"
/locus_tag="RCA_00250"
/note="Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved proteins
from bacteria to humans that generally catalyze the
transfer of gamma-phosphates of a nucleoside...; Region:
NDPk_I; cd04413"
/db_xref="CDD:58528"
misc_feature order(61695..61697,61815..61817,61839..61841,61923..61925,
61941..61943,61974..61976,62004..62006,62013..62015,
62019..62024,62046..62048)
/gene="ndk"
/locus_tag="RCA_00250"
/note="active site"
/db_xref="CDD:58528"
misc_feature order(61707..61709,61722..61730,61737..61739,61746..61748,
61773..61781)
/gene="ndk"
/locus_tag="RCA_00250"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:58528"
gene 62091..63965
/locus_tag="RCA_00255"
/db_xref="GeneID:11860365"
CDS 62091..63965
/locus_tag="RCA_00255"
/note="COG0445 NAD/FAD-utilizing enzyme apparently
involved in cell division"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="YP_005299116.1"
/db_xref="GI:379022455"
/db_xref="GeneID:11860365"
/translation="MLKYDVIVIGGGHAGVEAATASARLGVSTLLITLKPANLGEMSC
NPAIGGIAKGILVKEIDALDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYK
KAMYQILTNYPNLNILYGKVEDIEIKSSKVKAVVLNDGSKIPCQKIILTTGSFLSGLI
HIGSTKIPAGRVDEEASYGLSNTLKRVGFKIGRLKTGTPPRIDGLTIDYSKTVLQPGD
KTPRPFSALTNIVDVPQINCFITKTTSETHDIIRENLDKSAMYSGQIETIGPRYCPSI
EDKIVRFSTKSEHRIFLEPEGLDDYTIYPNGISTSLPEEVQCKLIKTIPGLEKATILR
PGYAIEYDYVDPREISITLETKKIMGLYFAGQINGTTGYEEAAGQGIVAGINAALAVK
NQPPFILTRANSYIGVMIDDLTIFGTKEPYRMFTSRAEYRLSLRADNADLRLTELGIN
IGVVSKKRKEIFKKKCYNIEKTRNLLKTLSFTTSKLVKIGVQVAQDGTYKTVLDLFKI
PNFTIEQAIKIFPKLQEINSNILQLLYIEAKYASYLAKQQADINLFQNEEIQLIPKNI
DYFKIPSISLEIREKLSYYKPTTIGIARRIPGITPAAITAIIIYLKTKYNDGSFISNN
"
misc_feature 62091..63947
/locus_tag="RCA_00255"
/note="tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated; Region: PRK05192"
/db_xref="CDD:179960"
misc_feature 62106..>62465
/locus_tag="RCA_00255"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature <63039..63332
/locus_tag="RCA_00255"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 63705..>63875
/locus_tag="RCA_00255"
/note="GidA associated domain 3; Region: GIDA_assoc_3;
pfam13932"
/db_xref="CDD:206103"
gene 64109..64324
/gene="gidB"
/locus_tag="RCA_00260"
/db_xref="GeneID:11860366"
CDS 64109..64324
/gene="gidB"
/locus_tag="RCA_00260"
/note="COG0357 Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division"
/codon_start=1
/transl_table=11
/product="16S rRNA methyltransferase GidB"
/protein_id="YP_005299117.1"
/db_xref="GI:379022456"
/db_xref="GeneID:11860366"
/translation="MVDIGSGPVFPGIVLSIAGVAKVSLIEADLHKCIFLEKASKVSN
NSIQIINQRIEKVTIDCSILTCRAFLT"
misc_feature <64112..>64315
/gene="gidB"
/locus_tag="RCA_00260"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene 64484..65251
/locus_tag="RCA_00265"
/db_xref="GeneID:11860367"
CDS 64484..65251
/locus_tag="RCA_00265"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="soj protein"
/protein_id="YP_005299118.1"
/db_xref="GI:379022457"
/db_xref="GeneID:11860367"
/translation="MKVIAIVNQKGGVAKTTTTVNLATAFAALNKKVLVIDLDPQGNS
STGFGISQQQRKNTIYQVLINLIELKDAIIATNIPNLEIITSNTNLSAVELDLTKLKD
REYILMKLLKEIKILYNYIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHL
LKTIKIVEKKLNPKIKIVGILFTMYDKRNRLTEQVEDDVRKCLGALVFKTVIPRNIKL
SEAPSYGKPAIIYDYKCSGAVAYMELTKEILERYGEK"
misc_feature 64484..65248
/locus_tag="RCA_00265"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:31385"
misc_feature 64490..>64606
/locus_tag="RCA_00265"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 64511..64531
/locus_tag="RCA_00265"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature 64529..64531
/locus_tag="RCA_00265"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature <64835..65032
/locus_tag="RCA_00265"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 64853..64855
/locus_tag="RCA_00265"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 65238..66098
/locus_tag="RCA_00270"
/db_xref="GeneID:11860368"
CDS 65238..66098
/locus_tag="RCA_00270"
/note="COG1475 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="tRNA uridine 5-carboxymethylaminomethyl
modification protein GidA"
/protein_id="YP_005299119.1"
/db_xref="GI:379022458"
/db_xref="GeneID:11860368"
/translation="MAKNKGLGRGLSSLLGEEVISIESEIVQIINIDKIRPNENQPRK
NFEYDKIKELADSILNNGLLQPIIVDNNFQIIAGERRWRACKLAKVLEIPVIIKNLDA
KESVEIALIENIQRTDLTVMEEARGFKYLVDNFNYTVEKLAERLGKSRSHIANLLRLN
NLPQSIQDKVNENILSMGQARCLINHEHAEAIADYIINNNLNVRQTEKLVRQWYKNDY
TKFPKNNNKVGKPFLKDSTTDNDLELLAKALSEKFGIKITIENCSLGGKLIFHYKDLK
ELDLILLQLN"
misc_feature 65325..65828
/locus_tag="RCA_00270"
/note="ParB-like partition proteins; Region: parB_part;
TIGR00180"
/db_xref="CDD:161748"
misc_feature 65325..65579
/locus_tag="RCA_00270"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
misc_feature 65637..>65750
/locus_tag="RCA_00270"
/note="KorB domain; Region: KorB; pfam08535"
/db_xref="CDD:149550"
gene 66389..68056
/locus_tag="RCA_00275"
/db_xref="GeneID:11860369"
CDS 66389..68056
/locus_tag="RCA_00275"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_005299120.1"
/db_xref="GI:379022459"
/db_xref="GeneID:11860369"
/translation="MSYQYVYEMVGLSKIINGKQILKETNLSFLPRAKIGIIGPNGAG
KSTLLKIMAGIDKEFEGKAIAKIGIKIGYLPQEPYLDPSKSVFDNIIEGLHEKKKLIE
EFNDISNKFSTEITDEKMQQLFDKQAELQEKIDNCDGWNLEREIEIAMLALRCPPKEA
DITKISGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVSWLEDYLKHYEGTVIVIT
HDRYFLDNVTEWILEIDRGNCIPWESNYSSWLEQKQKKIALESKEDNDRKKQLRRELE
WIRQTPKARQSKNKARITAYHELLNKQQDQKNDPTQIIIPNGPRLGDLVIEAEHIAKK
FNNKILLSDFSFKVPRGAIVGIIGPNGAGKSTLFNIITGKIIPDSGSIKIGQTVKLGY
VDQSRDHLDDNKTIWEEISEGLDELQLGNKIVKSRAYCAAFNFRGSDQQKKVGQLSGG
ERNRVHLAKLLKEGANVILLDEPSNDLDIDTLRALEDAILGFAGCVLVISHDRWFLDR
IATHIISYDKENNATWFEGNYQDYHEYMLSTNGESILNPKYKHKKLI"
misc_feature 66389..68050
/locus_tag="RCA_00275"
/note="putative ABC transporter ATP-binding protein;
Reviewed; Region: PRK11819"
/db_xref="CDD:183324"
misc_feature 66410..>66616
/locus_tag="RCA_00275"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 66503..66526
/locus_tag="RCA_00275"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(66512..66517,66521..66529,66614..66616)
/locus_tag="RCA_00275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 66605..66616
/locus_tag="RCA_00275"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <66872..67099
/locus_tag="RCA_00275"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
misc_feature 67082..>67264
/locus_tag="RCA_00275"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature 67364..67942
/locus_tag="RCA_00275"
/note="ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated...; Region:
ABCF_EF-3; cd03221"
/db_xref="CDD:72980"
gene 68059..68376
/locus_tag="RCA_00280"
/db_xref="GeneID:11860370"
CDS 68059..68376
/locus_tag="RCA_00280"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_005299121.1"
/db_xref="GI:379022460"
/db_xref="GeneID:11860370"
/translation="MSLTQILLILFIGILVTNPSDIFIIIKEFKKIKAYLINIKTSII
KNINEQLETEQLNFYLKKIINLEGYYHGDYDLTTIKEKYYTLVINNDLIENESATDIT
EKY"
misc_feature <68203..68334
/locus_tag="RCA_00280"
/note="Protein of unknown function (DUF2672); Region:
DUF2672; pfam10878"
/db_xref="CDD:151327"
gene 68411..69235
/locus_tag="RCA_00285"
/db_xref="GeneID:11860371"
CDS 68411..69235
/locus_tag="RCA_00285"
/EC_number="2.5.1.55"
/note="COG2877 3-deoxy-D-manno-octulosonic acid (KDO)
8-phosphate synthase"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_005299122.1"
/db_xref="GI:379022461"
/db_xref="GeneID:11860371"
/translation="MQKVVKLHNIKIGNDLPFVLIAGPCQIEGQDHALFMAEKLVKLT
SKLDIPFIYKSSFDKANRTSINGVRGLGIEKGLEVLSKVKAEFDCPIVTDVHSESQCT
ETARVVDILQIPAFLCRQTDLLQAAAKTGKIVKVKKGQFLAPWDMKNVQTKLKAFGAE
NILFTERGTCFGYNNLVSDMRSLAIMAKLNVPVIFDATHSVQQPGGLGDSTGGERKYV
ELLAKAATTVGIAGMYMEVHQDPDNAPSDGPCMIKLDNLESILIKLKKYDKITKEK"
misc_feature 68435..69229
/locus_tag="RCA_00285"
/note="DAHP synthetase I family; Region: DAHP_synth_1;
pfam00793"
/db_xref="CDD:189723"
misc_feature 68435..69223
/locus_tag="RCA_00285"
/note="2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional; Region: PRK05198"
/db_xref="CDD:179961"
gene complement(70614..70946)
/locus_tag="RCA_00290"
/db_xref="GeneID:11860372"
CDS complement(70614..70946)
/locus_tag="RCA_00290"
/note="COG0316 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="2-dehydro-3-deoxyphosphooctonate aldolase"
/protein_id="YP_005299123.1"
/db_xref="GI:379022462"
/db_xref="GeneID:11860372"
/translation="MTITITDRAFQRVRKLIGLEKDKNLALRVSVDSGGCSGLMYNYE
LVSKNTIEQDDYVITKHNATIIIDPISQKFMLDCTLDFIEELGSSYFNVHNPQAKAKC
SCGNSFAV"
misc_feature complement(70617..70937)
/locus_tag="RCA_00290"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 71108..72238
/locus_tag="RCA_00295"
/db_xref="GeneID:11860373"
CDS 71108..72238
/locus_tag="RCA_00295"
/note="COG0232 dGTP triphosphohydrolase"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate
triphosphohydrolase-like protein"
/protein_id="YP_005299124.1"
/db_xref="GI:379022463"
/db_xref="GeneID:11860373"
/translation="MLASYASNPLKSRGRLYKEIPNTYRNEFERDRDRIIHTNAFRRL
QYKTQVFINHEGDHYRNRLTHSLEVSAVARSVANTLNLSSDLAETIALAHDLGHTPFG
HAGERALNACMRDYNGFSHNAQSLKILTLLEKRYAAYNGVNLTWEVLEGIVKHNGPIT
CEINEYIAEYNKQNDLELDRYASAEAQIAALADDISYISHDLEDSIGAKIIDFNSLAE
LKYIDQYVFALKSKFKNISSSCLIYEVVRKLMHELITDLLWQTKENLNKEKITDIDEI
RNLNYQLVDFTANTNERIKETKKFLHERVYKSNKITAISLKCTKIVQGLFKVYMDDIN
LLPVNWKMLIDSNEIYSKARVIADYIAGMTDRFAIQAYNQLC"
misc_feature 71108..72235
/locus_tag="RCA_00295"
/note="deoxyguanosinetriphosphate triphosphohydrolase-like
protein; Provisional; Region: PRK01286"
/db_xref="CDD:179272"
misc_feature 71285..71734
/locus_tag="RCA_00295"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(71300..71302,71387..71392,71684..71686)
/locus_tag="RCA_00295"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 71390..71392
/locus_tag="RCA_00295"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 71957..72229
/locus_tag="RCA_00295"
/note="Phosphohydrolase-associated domain; Region:
HD_assoc; pfam13286"
/db_xref="CDD:205466"
gene 72415..74145
/gene="argS"
/locus_tag="RCA_00300"
/db_xref="GeneID:11860374"
CDS 72415..74145
/gene="argS"
/locus_tag="RCA_00300"
/EC_number="6.1.1.19"
/note="COG0018 Arginyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_005299125.1"
/db_xref="GI:379022464"
/db_xref="GeneID:11860374"
/translation="MNIFNQLKQDIIAASRQLYNNQEIANIVTIETSKDNFNGDLSSN
IAMIIAAKENIPPRTVALKFKEILITLPYIASIEIAGPGFINFTIKAESWQIAIKNIL
QHEGKFFEIDIDKNKYINIEYVSANPTGPMHIGHARGAVYGDVLARILQKVGYNVTKE
YYVNDAGSQINDLVSTVLLRYREALGEKITIPVGLYPGEYLIPVGQILVKEYGNKLLV
MDEEERFKIVKNFTVEKMLDLNRKDLEELGIKHDLFFSEQSLHDKGKIEEIVKLLTNM
GLIYEGTLPAPKGKIHAKWDNRVQKLFKSTKYGDSQDRPIEKADGSWSYFASDLAYAK
DKIDRGANHLIYVLGADHSGYVKRIEAIVKALGKEQIKVDVKICQLVNFIENGVPVKM
SKRLGSFASVQDVNHEVGKDIIRFMMLTRQNDKPLDFDLVKVKEQSRENPIFYVQYAH
VRTISILSKAKELMPESYSSFEAGIYDLSLLSSEEEIDIIKLLAAWTKTLEVSAKYFE
PHRIALYLINLASKFHSIWNFGKENSDYRFVIENNKELTTARLALAKAIQKVIASGFE
VIGVEPMNKM"
misc_feature 72421..74142
/gene="argS"
/locus_tag="RCA_00300"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature 72427..72681
/gene="argS"
/locus_tag="RCA_00300"
/note="Arginyl tRNA synthetase N terminal domain; Region:
Arg_tRNA_synt_N; pfam03485"
/db_xref="CDD:202664"
misc_feature 72769..73605
/gene="argS"
/locus_tag="RCA_00300"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(72778..72780,72787..72789,72793..72795,72811..72813,
72820..72822,73387..73389,73399..73401,73468..73470,
73477..73479)
/gene="argS"
/locus_tag="RCA_00300"
/note="active site"
/db_xref="CDD:185675"
misc_feature 72811..72822
/gene="argS"
/locus_tag="RCA_00300"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature <73585..73701
/gene="argS"
/locus_tag="RCA_00300"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
misc_feature 73588..73599
/gene="argS"
/locus_tag="RCA_00300"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature order(73708..73710,73726..73728,73756..73758,73768..73773,
73777..73782,73954..73956,73975..73977,73984..73986,
73993..73995)
/gene="argS"
/locus_tag="RCA_00300"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature 73750..74142
/gene="argS"
/locus_tag="RCA_00300"
/note="DALR anticodon binding domain; Region: DALR_1;
smart00836"
/db_xref="CDD:197905"
misc_feature order(73756..73758,73765..73770,73777..73782,73993..73995)
/gene="argS"
/locus_tag="RCA_00300"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 74221..74886
/locus_tag="RCA_00305"
/db_xref="GeneID:11860375"
CDS 74221..74886
/locus_tag="RCA_00305"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_005299126.1"
/db_xref="GI:379022465"
/db_xref="GeneID:11860375"
/translation="MINNIFVKICIGCLICISAIYFAYQYYQSSKPIITIYPDELPTK
IKPSIIENNQAAVHSTIYENLIAKDINIKTVKLLPDPEKPINIDSCNQSQSDESFDEI
SNLIALIEPSNNYKNETDLNIIKLEKKDKASNAKNCKNNGNYKVQLGSVKSEAEAIQE
GERIKKRFPKILQNVVITTKKVKYDDGKFFYLILAGDYGSLSQAKVVCKKLAYNKQSC
VLK"
misc_feature 74638..74883
/locus_tag="RCA_00305"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 75069..77285
/locus_tag="RCA_00310"
/db_xref="GeneID:11860376"
CDS 75069..77285
/locus_tag="RCA_00310"
/EC_number="5.99.1.-"
/note="COG0188 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_005299127.1"
/db_xref="GI:379022466"
/db_xref="GeneID:11860376"
/translation="MKQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHR
RLLYAMLQLRLEPNSGYKKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLID
GQGNFGSIDGDNAAAMRYTESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPAS
FPNLLANGSEGIAVGMATNIPPHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTG
GIIIDKAEVINAAYSTGRGSLRVRSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIA
ILLKDKKIPLVSNIRDESTDIIRLVIEPRDRNCDPQVVMESLFKLTNLESRIQLNMNV
IGSNNVPRVMNILEILQEFLDHRQSIVTRRSTYLLNKIQHRLEILEGLRIAYLNFDEI
IKIIREEDEPKAIMIKWFKLTEIQVEAILNTRLRSLHRLEEQKIINEHSNLKKQQVIL
EEILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTLTNQVVDITAFITKEP
ITIICSKMGWVRSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLLIVSSEGRFFTLLA
DNISKGKGMEESIKLLVDIGNNDITNILVYKPDQLLLLASSIGKGFLVNSNEVIAQTK
TGKQIMNVPNGHICITCLPANGDSVACIGESRKLLVFNIDEIPEMKKGQGVTLQKFKD
AKLLDVKIFNKEDGLGWNNNGKVKLEKNIIAFLGKRGGAGKLPPMGFPKNNRFSSL"
misc_feature 75069..77273
/locus_tag="RCA_00310"
/note="DNA topoisomerase IV subunit A; Validated; Region:
PRK05561"
/db_xref="CDD:180129"
misc_feature 75150..76481
/locus_tag="RCA_00310"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(75150..75233,75246..75395,75399..75455,75459..75530,
75537..75539)
/locus_tag="RCA_00310"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 75426..75428
/locus_tag="RCA_00310"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(76227..76235,76242..76253,76275..76280,76320..76370)
/locus_tag="RCA_00310"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
gene complement(77661..78983)
/locus_tag="RCA_00315"
/db_xref="GeneID:11860377"
CDS complement(77661..78983)
/locus_tag="RCA_00315"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit A"
/protein_id="YP_005299128.1"
/db_xref="GI:379022467"
/db_xref="GeneID:11860377"
/translation="MKNLLLATSIVCFASACLATKNPTPIISNSDTSIKLEGFYLFES
GYIKQDHLILFDKNVTDNRKKLGFYTEAAFAATITKTINDIIAGAKIVLQPTTRLKTS
TSYNGSHVFIETSYGKTELGSPADASAKLRITGSQVTAGTGGWSRYALLNGQHMRYKG
LKPDFDTNASFYLESYSNYFDQINDKAERARRVNFFTPKMKGFQAAISYTPDTANTGG
NRYINNLMPDKSSESNVISVSKTGIQRVKLENNEAMTINQNIRDAFSAGLTYEHEISE
DTDLKLSVTGEYGKPARRLIHTKMDRTKGVEILNTYKLSNLKAYNLGAVFTYGNFSCG
ASYGSLGKSLTAKEYYKVGRDTYYYNGAVAYRQGPIKTSLEYLKTSRYKNTVNTVSLA
TEYKIMPGLLPYAEISHFQAKGKPVYYPEAPRKTTRGTVGLIGTKLKF"
misc_feature complement(77739..78944)
/locus_tag="RCA_00315"
/note="Gram-negative porin; Region: Porin_4; pfam13609"
/db_xref="CDD:205787"
gene 79267..79833
/gene="dcd"
/locus_tag="RCA_00320"
/db_xref="GeneID:11860378"
CDS 79267..79833
/gene="dcd"
/locus_tag="RCA_00320"
/EC_number="3.5.4.13"
/note="COG0717 Deoxycytidine deaminase"
/codon_start=1
/transl_table=11
/product="deoxycytidine triphosphate deaminase"
/protein_id="YP_005299129.1"
/db_xref="GI:379022468"
/db_xref="GeneID:11860378"
/translation="MAIMSDKWIKEAVINQSMIKPFVEKQVRVHNKDKIISYGLSSYG
YDARVSNEFKIFTNINSTTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKIPR
DILVICVGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFL
NSDQMCDTSYADRQGKYMKQVGVTLPLT"
misc_feature 79480..79743
/gene="dcd"
/locus_tag="RCA_00320"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature order(79513..79515,79528..79533,79537..79539,79585..79587,
79591..79608,79621..79629,79639..79641,79648..79650,
79669..79671,79675..79677,79681..79683,79687..79689,
79699..79713,79720..79722,79732..79734)
/gene="dcd"
/locus_tag="RCA_00320"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature order(79597..79605,79639..79647,79654..79656,79666..79671)
/gene="dcd"
/locus_tag="RCA_00320"
/note="active site"
/db_xref="CDD:143638"
gene 79930..80388
/locus_tag="RCA_00325"
/db_xref="GeneID:11860379"
CDS 79930..80388
/locus_tag="RCA_00325"
/note="COG1952 Preprotein translocase subunit SecB"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_005299130.1"
/db_xref="GI:379022469"
/db_xref="GeneID:11860379"
/translation="MSTINTNTNELMPHISVNAQYIKDLSLENPSAPSSLAALDQRPQ
IDLSLDINITNLSEENFYEVELNIEAIARNEKYTLFQIELKYAGVFNLINIDSEQHPI
LLSVHCPAMIFPFARKIIASCTQDAGFQPLMIDPIDFGALYHKKMSEHQN"
misc_feature 79972..80364
/locus_tag="RCA_00325"
/note="Preprotein translocase subunit SecB. SecB is a
cytoplasmic component of the multisubunit membrane-bound
enzyme termed Sec protein translocase, which is the main
constituent of the General Secretory (type II) Pathway
involved in translocation of nascent...; Region:
Translocase_SecB; cd00557"
/db_xref="CDD:29643"
misc_feature order(79999..80001,80011..80013,80170..80172,80176..80178)
/locus_tag="RCA_00325"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(80167..80169,80173..80175,80179..80181,80185..80187)
/locus_tag="RCA_00325"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene 80612..81325
/locus_tag="RCA_00330"
/db_xref="GeneID:11860380"
CDS 80612..81325
/locus_tag="RCA_00330"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_005299131.1"
/db_xref="GI:379022470"
/db_xref="GeneID:11860380"
/translation="MRVLLIEDKPEMANLIELTLASEGIVCDKASVGVEDLRLAKVSG
YDLVILDLMLPDINSFEILLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKP
FVREELIARIKAIVRRSKGHVASVFRFDKVSVNLDTRSVEVEGKKVHLTNKEYAVLEL
LILRRGTILTKEMFLNHLYNSVDEPAIKIIDVFICKLRKKLSDAAGGRDYIDTVWGRG
YMLKEYDELQQKEILAQGA"
misc_feature 80612..81280
/locus_tag="RCA_00330"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 80621..80959
/locus_tag="RCA_00330"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(80630..80635,80762..80764,80786..80788,80846..80848,
80903..80905,80912..80917)
/locus_tag="RCA_00330"
/note="active site"
/db_xref="CDD:29071"
misc_feature 80762..80764
/locus_tag="RCA_00330"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(80771..80776,80780..80788)
/locus_tag="RCA_00330"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 80912..80920
/locus_tag="RCA_00330"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 80990..81274
/locus_tag="RCA_00330"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(81062..81064,81119..81124,81176..81178,81185..81187,
81209..81214,81248..81250,81263..81265)
/locus_tag="RCA_00330"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 81329..82150
/gene="queF"
/locus_tag="RCA_00335"
/db_xref="GeneID:11860381"
CDS 81329..82150
/gene="queF"
/locus_tag="RCA_00335"
/note="COG2904 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_005299132.1"
/db_xref="GI:379022471"
/db_xref="GeneID:11860381"
/translation="MPLSASLLGKNSTYKDSYDATLLFKIPRINNRNELGINSNNLPF
YGVDIWNTYELSCLNKNGKPWVGVGTFYIPTDSENIVESKSFKLYLNSFNNFVVESIE
ELERIILQDLSNVTHAKVTGQIFPINTKIEFGVPSGKNIDDLNIECNNYCPPDNSLIE
YEDVLVEEEINSNLLKSNCLVTGQPDWGTIVIKYRGKKLKHDSFLKYLISFRNYNEFA
EQCAERIFTDINNSINPDFLSIYIVYTRRGGIDICPYRSLDQNYNLPSNKRLIRQ"
misc_feature 81332..82147
/gene="queF"
/locus_tag="RCA_00335"
/note="7-cyano-7-deazaguanine reductase; Provisional;
Region: queF; PRK11792"
/db_xref="CDD:183317"
misc_feature <81542..>81685
/gene="queF"
/locus_tag="RCA_00335"
/note="Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold;
cl00263"
/db_xref="CDD:212183"
misc_feature 81734..82147
/gene="queF"
/locus_tag="RCA_00335"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:31123"
gene complement(82430..82990)
/locus_tag="RCA_00340"
/db_xref="GeneID:11860382"
CDS complement(82430..82990)
/locus_tag="RCA_00340"
/note="COG3820 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="putative cytoplasmic protein"
/protein_id="YP_005299133.1"
/db_xref="GI:379022472"
/db_xref="GeneID:11860382"
/translation="MNAQKILPLLPKATAMWLIEHTSLTFKQIADFCGIHEFEIKGMA
DGEVAQSIKGLSPIANGQLTLEEIERCSKDPNTSLQISYSTADELMKNQKKQRAKYIP
IARRQDKPDAIYWLLSNYPNIQDHQIIKLVGTTKTTIDAIRTRTHWNMNSIRPRDPVL
LGICSQIDLNKIVEVLKPIQNPTKES"
misc_feature complement(<82433..82981)
/locus_tag="RCA_00340"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3820"
/db_xref="CDD:33613"
misc_feature complement(83314..83935)
/note="potential frameshift: common BLAST hit:
gi|15892027|ref|NP_359741.1| NAD(P) transhydrogenase
subunit beta"
misc_feature complement(83804..84071)
/note="potential frameshift: common BLAST hit:
gi|165932671|ref|YP_001649460.1| NAD(P) transhydrogenase
subunit beta"
misc_feature complement(83928..84559)
/note="potential frameshift: common BLAST hit:
gi|165932671|ref|YP_001649460.1| NAD(P) transhydrogenase
subunit beta"
gene complement(84742..85473)
/locus_tag="RCA_00365"
/db_xref="GeneID:11860383"
CDS complement(84742..85473)
/locus_tag="RCA_00365"
/note="COG3047 Outer membrane protein W"
/codon_start=1
/transl_table=11
/product="OmpW family outer-membrane protein"
/protein_id="YP_005299134.1"
/db_xref="GI:379022473"
/db_xref="GeneID:11860383"
/translation="MLRIVKKLGVTLLVSSISMSSFAKSMYNDIDSTEYYDSTPYYEN
EGSLVFKVRLGSIFSSAKQKGLPPPTSTQPVSVGEVAKNGYGGNASTTIFFNNYLATE
LSLGFNVLRTKYKAIANVAHNYGADTKLGKYKPIYMIPATITGQFHIAPYGGIRPYIG
LGYHGSYMLTQATSLKIRNGHGAVGQIGVDFYAKDDTLINLDVKQFFLNPKLEYKPNL
VGNKIVTSKVKLNPLIVSIGIGFTF"
misc_feature complement(84745..85398)
/locus_tag="RCA_00365"
/note="Outer membrane protein W [Cell envelope biogenesis,
outer membrane]; Region: OmpW; COG3047"
/db_xref="CDD:32861"
gene 85610..86494
/locus_tag="RCA_00370"
/db_xref="GeneID:11860384"
CDS 85610..86494
/locus_tag="RCA_00370"
/note="COG0697 Permeases of the drug/metabolite
transporter (DMT) superfamily"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine transporter"
/protein_id="YP_005299135.1"
/db_xref="GI:379022474"
/db_xref="GeneID:11860384"
/translation="MNDALKTYLTGIGWFLLSLVSSSANDVMSKYLGTRLDSFEVAFF
RFFFSSIVLLPFVAYYGKNTLKTSSPFVHILRGLLLFFGMTAWTYGLTIAPVTTATVI
SFSIPLFTLILAVFFLNENIIWQRWVVTIVGFIGLVITLKPHAEDFNPEILYFVLAAI
SFAMLDIINKKFVIKESMISMLFYSAIVTAIVSLPVASQYWLTPSSFELVLLFVLGSS
GSIILFFLLKAFSMVDATATAPYRYLELVISAIAAYLIFNEFPDKSTLYGAVIIIPAT
LFIIYSEKKAMSRKHESQ"
misc_feature <85760..86032
/locus_tag="RCA_00370"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 86087..86452
/locus_tag="RCA_00370"
/note="EamA-like transporter family; Region: EamA;
cl01037"
/db_xref="CDD:207295"
gene 86481..87743
/locus_tag="RCA_00375"
/db_xref="GeneID:11860385"
CDS 86481..87743
/locus_tag="RCA_00375"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="7-cyano-7-deazaguanine reductase"
/protein_id="YP_005299136.1"
/db_xref="GI:379022475"
/db_xref="GeneID:11860385"
/translation="MNRSKLVFSSVIANTFEWYDYVLFGYFAPIIGAKFFPNDEANTA
LLQAFLVFAIGYLARLLGGIFFGVIGDRFGRKVALTSALFCMSAPTVLIGILPTYHTI
GITATILMIIVRILQGLSMGGALTGSISFVIEHTSSKHRGFTGSILMSSICSGLLLGA
FVSYIVRHILTASQFDNFGWRIPFLLGFFILFAAFYIKKHTDETPNFKNLREQKKILQ
SPLEKVITNHWFDILISIFINAPGSIIFYLTTIYLVSFLKISRNFTEDEVNSLASVCY
VIMIAVTLLSGYLSDIIGRRKIFVINLVIIIVMTPFLLNNFKNCDFTSVIISQFILAV
LAASYIGPEPALQAEFYHANIRNTALSISYNTATSIFGGTTPLVFEYLVQKTGHVTSA
VYYIILSCIFALIALSFYKNRSLDKMQS"
misc_feature 86499..87710
/locus_tag="RCA_00375"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 86520..87692
/locus_tag="RCA_00375"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(86541..86543,86550..86558,86562..86567,86634..86636,
86643..86648,86655..86657,86667..86672,86676..86681,
86841..86846,86853..86858,86865..86870,86877..86879,
86913..86918,86925..86930,86946..86948,87207..87209,
87216..87221,87228..87233,87240..87242,87282..87284,
87294..87296,87306..87308,87315..87317,87327..87329,
87477..87479,87486..87491,87498..87500,87510..87515,
87522..87524,87555..87560,87570..87575,87582..87587,
87594..87596)
/locus_tag="RCA_00375"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 87829..87904
/locus_tag="RCA_t05291"
/db_xref="GeneID:11860386"
tRNA 87829..87904
/locus_tag="RCA_t05291"
/product="tRNA-Thr"
/db_xref="GeneID:11860386"
gene 88067..88369
/gene="secG"
/locus_tag="RCA_00380"
/db_xref="GeneID:11860387"
CDS 88067..88369
/gene="secG"
/locus_tag="RCA_00380"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_005299137.1"
/db_xref="GI:379022476"
/db_xref="GeneID:11860387"
/translation="MIDILLFIHITIAILLIIVILMQRSGSDGISSISGGNNMGVVSA
KTVSNFLTKSTVILMILFLINAIVLANLSSKKKSDLVSKINEIEENQTENSLPIAK"
misc_feature <88196..88279
/gene="secG"
/locus_tag="RCA_00380"
/note="Preprotein translocase SecG subunit; Region: SecG;
cl09123"
/db_xref="CDD:212294"
gene 88632..89294
/locus_tag="RCA_00385"
/db_xref="GeneID:11860388"
CDS 88632..89294
/locus_tag="RCA_00385"
/note="COG1738 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299138.1"
/db_xref="GI:379022477"
/db_xref="GeneID:11860388"
/translation="MSIEFNIKEKIYIILCMFFTVLIIVGNLIYQKFISLNIFNFYIL
ELSVGTILYPLTFLFTDLITEFYSKERANFCVKLAIIFNIIVVLIISLMDKLEATNWS
NVDNITFHKVFGSYHISFLASTFACYIAQLLDINIYLWIRKITKGKYLWIRNNFSTAI
SLFIDTFIVIGIMNLFNIIPLKQLGYLVLNSYSFKLFFTIFSTPIFYAGVCLISLFFK
KG"
misc_feature 88770..89216
/locus_tag="RCA_00385"
/note="Uncharacterized ACR, YhhQ family COG1738; Region:
DUF165; pfam02592"
/db_xref="CDD:190356"
gene complement(89536..94968)
/locus_tag="RCA_00390"
/db_xref="GeneID:11860389"
CDS complement(89536..94968)
/locus_tag="RCA_00390"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecG"
/protein_id="YP_005299139.1"
/db_xref="GI:379022478"
/db_xref="GeneID:11860389"
/translation="MNAQSFNSKKYALAFFMSTYLLAISFLSTSARAASFTQLANKTP
ALSHLSEAQRKNQWNQYSLVTKQAAWKAAKLVPDLNQAILDVQNGFDPKLLSDSNTNV
RHKAREKNADITLYIAQIAQPDYDKKFNEYINRGVIPTPEEVGENLGIVYDPRKTNYK
IETDQKVRRAEKDKKAIIDRYIDLVKIALVEKDYTTTGMVPELEELMTKLNIDKAKAK
LRRTAIRDQVMKNKKAEIITIGKIPTQETLHKLFGKDRESNDTKYINDIRMHVMHNKK
QHYVDTNHIPNTHEIMKEFNIDKGLAKLYLKQIKAETEVKHQADNKQNTTKPFTKHSR
TTTDTEEKFSQFPFDTLKKEKQPYSFDPRSTFESLLKGKGNNNFTQSQQNIYKIIQQE
ANIEEFKHLIKTEPIAALNLEVDSSYKKEAVNAILSDFNNDTIQKILFSDDKGKLNFN
TNIDIEHKPILKELFKNSSEEQRKKIIENISKYAKENIIPLVFKGEVRHDKLSDLLKL
AAITDKSIVKKVLTLQLELKNNVHSYTAQGNGISPEGIKVINAILRKYHVTEKDLSSS
EMIKLANSFHSQGFEDSIKIMSFSEQELNTQIYNLFGLSIQNKTHGNGNMPPLLPPPP
PPPLPPLFGNPYLDKLKSTPKLYDLYNQFIQNNKSKNKKTTENITKSNTPKRSEPKTE
YAKLYKQYRAETGGKKADDLQDQLIKKQSDITNVIRQILTASYAEQGINTEDLITLFG
NPNPEVTEKAKEVFVILVQDPYIQDITVNGKKTITSEAILQNLFNEDADDAVERILLS
SCKISEALKKPIEHELNKSKLMRELESKQNPFEQLKFAYEKAAILGQTFDTKLAELIK
NPAILTTQEQINFLTQENNKLKKVIHSDQAQAKLDNLRTTILSTIKFEELTTANLSQN
DFIAIVKEKDPELLKEFLKATIIKHESNNNLDQLRLALPSFTGMSDQQVRILSSKLNM
YVILKALQKYEQEESKNHAHTSNMPPPPPPPPGSKILQITYLKNLGITEDWINRITKL
NENINTHTSKTVPQVYDFNSDIALRYNGFALSGQKSAGHKAKYSDADLLQKAIIESIV
LEHSKNVSEVNQNRQYFEKIQEAVSTMKSSFIGPRTEIGQEIHNIYNSKLLELTKDKE
FIRYVEDNVKPSKKRTDALIAAFTSVNSDFIGPITEDIHNIFTQQMTKYTEEEVREAF
NTANSDFIGPRTEIGQEVHNIYNSKLLELTKDKELLLFVEELLTESTNLEQKYGSNVQ
PENKGKKESLVDKMKKRLQQENKVKNDKSLTESDTKYEDNDDNNKKLELSDSKTTVSQ
MLSNSNDSKNDKSLTESDTKYEDNDDNNKKLELSDSKTTVSQMLSNSNDSKNDKSLTE
SDTKYEDNDDNNKKLELSDSKTTVLQMLSDSNDSKNDKSSDDKKSLLTLRSSEEEDEG
YETDENELEESNNTTEEEFKKDIPLESEDKTINMSLETEEIARQDETVLKERISKETN
NKVAILVKATSTLNKYIHPSILTNRLNIGIIAAGDEEASINRGLWISGLYGINKQSTW
KNIPKYQGRTTGITIGTDAEFINSHDVIGIAYSRLNSQVKYNKKLGKTAINGHLLSIY
GQKELIKGFTLQAITTYSHNYIKNKSISTNNIIGKYQNNNVSFESLLNYQYRTKYDLY
LIPNISLKYDYSRASNYKEYNVDIENLMIQKKSNQSFESSLGGKIVFKPIATISNIVL
TPSLYGNIEYHFNNKNTKVNAKATFKGQALQEIIILPKQPKLGYNIGSNILMSRKNIN
VLLEYNYYTHKKYQSHQGLVKLKVNL"
misc_feature complement(89563..90366)
/locus_tag="RCA_00390"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 95137..96516
/gene="cysS"
/locus_tag="RCA_00395"
/db_xref="GeneID:11860390"
CDS 95137..96516
/gene="cysS"
/locus_tag="RCA_00395"
/EC_number="6.1.1.16"
/note="COG0215 Cysteinyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_005299140.1"
/db_xref="GI:379022479"
/db_xref="GeneID:11860390"
/translation="MQIQFHLYNTLTRTKELFRPQDQANVKMYVCGPTVYDNPHIGNS
RSAAVYDLLYRILIKIFGSTAVKYIRNITDVDDKIIDRAELLGSTINELTDKVTQEFH
INMEYLGCKLPSIEPKATEHIDIMIEIIERLIAKKHAYIADKHVYFNVLSAPNYTELS
NRNLEEMFEGVRVENSKTKKHPQDFVLWKPAKPNESANMNFDSPWGLGRPGWHIECSA
MSYKYLGENFDIHGGGADLIFPHHTNEIAQSRCAFPSSTYAKYWVHHGFLTVNGEKMS
KSLGNFITVRDLMDKEISGEVIRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIVN
INLQKIDIIPNDFMQSLLDDMNTPLAVKIINDYARGVFTSTTEEEKKFNASNLITCAN
FIGLMNKTPHEWFNSGVNELYINELVNKRLEAKKQKNWLLADQIRNQLLEQQIVLEDK
PDGTIWRKG"
misc_feature 95152..96513
/gene="cysS"
/locus_tag="RCA_00395"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature 95152..>95493
/gene="cysS"
/locus_tag="RCA_00395"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(95227..95238,95254..95256,95260..95265,95272..95277,
95347..95349,95353..95355)
/gene="cysS"
/locus_tag="RCA_00395"
/note="active site"
/db_xref="CDD:173899"
misc_feature 95254..95265
/gene="cysS"
/locus_tag="RCA_00395"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <95770..96078
/gene="cysS"
/locus_tag="RCA_00395"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 95956..95970
/gene="cysS"
/locus_tag="RCA_00395"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 96079..96510
/gene="cysS"
/locus_tag="RCA_00395"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature order(96082..96084,96094..96096,96103..96105,96112..96114,
96124..96129,96133..96138,96220..96222,96241..96243,
96250..96252,96259..96261)
/gene="cysS"
/locus_tag="RCA_00395"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(96112..96114,96121..96126,96133..96138,96259..96261)
/gene="cysS"
/locus_tag="RCA_00395"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 96816..97703
/gene="rpsB"
/locus_tag="RCA_00400"
/db_xref="GeneID:11860391"
CDS 96816..97703
/gene="rpsB"
/locus_tag="RCA_00400"
/note="COG0052 Ribosomal protein S2"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S2"
/protein_id="YP_005299141.1"
/db_xref="GI:379022480"
/db_xref="GeneID:11860391"
/translation="MSKIPSVNIKELLDAGVHFGHKTSRWNPKMGSYIYGERDDVHII
DLRQSAVLMSVALNAIYETVKKDGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGG
MLTNWKTIAGSIEKLNKLEKTLGNEEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNS
KPDLLVVIDTNKEHIAINEAVKLNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYC
SLFADAALQGLAESMKASGVDMGAIQEHTDKALTSKSVSKLKQTKKFSKMKNIDEETN
TEFEQALNDADKNKNSENA"
misc_feature 96849..97496
/gene="rpsB"
/locus_tag="RCA_00400"
/note="Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli RPS2
is essential for the binding of...; Region: RPS2; cd01425"
/db_xref="CDD:100106"
misc_feature order(96897..96902,96927..96935,97107..97109,97113..97121,
97128..97133,97350..97352,97359..97361)
/gene="rpsB"
/locus_tag="RCA_00400"
/note="rRNA interaction site [nucleotide binding]; other
site"
/db_xref="CDD:100106"
misc_feature order(97356..97361,97365..97367,97407..97418)
/gene="rpsB"
/locus_tag="RCA_00400"
/note="S8 interaction site; other site"
/db_xref="CDD:100106"
misc_feature 97461..97478
/gene="rpsB"
/locus_tag="RCA_00400"
/note="putative laminin-1 binding site; other site"
/db_xref="CDD:100106"
gene 97725..98654
/gene="tsf"
/locus_tag="RCA_00405"
/db_xref="GeneID:11860392"
CDS 97725..98654
/gene="tsf"
/locus_tag="RCA_00405"
/note="COG0264 Translation elongation factor Ts"
/codon_start=1
/transl_table=11
/product="elongation factor Ts"
/protein_id="YP_005299142.1"
/db_xref="GI:379022481"
/db_xref="GeneID:11860392"
/translation="MSEVNISAVVVKALREKTGAGMMDCKNALIETKGNFEEAIDFLR
KKGLAAAVKKAGRITSEGLTAAKVEGLTGVVIEVNSETDFVARNEQFQDLVKNIVNLA
VVAKTIDKLKTSKMLNGKSVEEDIIENIATIGENLTLRRMDILEISEGAIGSYVHNEV
VPNLGKISVLVGLESKAKDKTKLEALAKQIAVHVAGNNPQSIDDSSLDQVLVERERKI
FFEKSKEEGKPYNIIEKMVEGRIRKFFSEVVLLQQGFLFEPRLTVAEVIKNTEKELGA
EIKITKFIRYELGEGIEHEEKNFADEVTAITQG"
misc_feature 97737..98639
/gene="tsf"
/locus_tag="RCA_00405"
/note="elongation factor Ts; Provisional; Region: tsf;
PRK09377"
/db_xref="CDD:181810"
misc_feature 97740..97850
/gene="tsf"
/locus_tag="RCA_00405"
/note="UBA/TS-N domain; Region: UBA; pfam00627"
/db_xref="CDD:201355"
misc_feature 97899..>98018
/gene="tsf"
/locus_tag="RCA_00405"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
misc_feature 98166..98594
/gene="tsf"
/locus_tag="RCA_00405"
/note="Elongation factor TS; Region: EF_TS; pfam00889"
/db_xref="CDD:189759"
gene complement(99746..100999)
/locus_tag="RCA_00410"
/db_xref="GeneID:11860393"
CDS complement(99746..100999)
/locus_tag="RCA_00410"
/note="COG1519 3-deoxy-D-manno-octulosonic-acid
transferase"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_005299143.1"
/db_xref="GI:379022482"
/db_xref="GeneID:11860393"
/translation="MMLLYYALSFILLPVYFIIILIRLLIGKEDIKRIQERFAIGKHR
QNSSFLVWIHAASIGESMTALTLIHNISKRYPDVRFLVTSWTQASAKILSTKLPKIAT
HQFLPIDNIIVTRKFLRNWQPNLGIFIESELWPCTINEGAKQCKLLLVNARISDKSFK
AWQKRKSFFQLILKNFSKIIVQSERDLQKFNKLGVSDAINLGNIKFANEKLPVNQEEL
SKLSLHLNNRRVVVFASTHMEDEELILPIIKSLKEQFLDCYVILIPRHPERVKSIIDN
CKSHNLSSTAKSQNDSPVLSDDLYIVDRFGEMGLFFSVATISFIGGSFKQGGHNILEA
AYFSNCIIFGPDMSKNTDIAKDILQHKAAIQIKNGEDLLTKLQYLLSSNNSLELKIYR
ENALKFVENNQKVLYEYLKVITKFL"
misc_feature complement(99749..100999)
/locus_tag="RCA_00410"
/note="3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed; Region: PRK05749"
/db_xref="CDD:180233"
misc_feature complement(100373..100912)
/locus_tag="RCA_00410"
/note="3-Deoxy-D-manno-octulosonic-acid transferase
(kdotransferase); Region: Glycos_transf_N; pfam04413"
/db_xref="CDD:203003"
gene complement(100996..101652)
/locus_tag="RCA_00415"
/db_xref="GeneID:11860394"
CDS complement(100996..101652)
/locus_tag="RCA_00415"
/note="COG2121 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonic-acid transferase"
/protein_id="YP_005299144.1"
/db_xref="GI:379022483"
/db_xref="GeneID:11860394"
/translation="MWKAFKKLLKRNRCVLSIITILLYWYLRFVYLTSRQKFIFYDNG
NKAKFLNEQGVIFVFWHNMLALSPAMFRGHRNIYALISPHLDGEILNNLVGKFGCRVI
VGSTNKNPIAALRNIIGNLSQGANIIVTPDGPKGPVYKVNSRITEIAYRYNKKVIPII
SSTSKCFRLNSWDKLIIPLPFGTIKIIVGSPLELTNDKIQNHINLEKQLTSLTESLKE
"
misc_feature complement(100999..101574)
/locus_tag="RCA_00415"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: DUF374; Region:
LPLAT_DUF374-like; cd07983"
/db_xref="CDD:153245"
misc_feature complement(order(101248..101256,101401..101412,
101455..101457,101461..101463,101470..101472))
/locus_tag="RCA_00415"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153245"
gene complement(101727..102947)
/locus_tag="RCA_00420"
/db_xref="GeneID:11860395"
CDS complement(101727..102947)
/locus_tag="RCA_00420"
/EC_number="2.6.1.1"
/note="COG0436 Aspartate/tyrosine/aromatic
aminotransferase"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_005299145.1"
/db_xref="GI:379022484"
/db_xref="GeneID:11860395"
/translation="MSIISTRLNSIKSSPTLAIVKKTLELKRLGIDIIALGAGEPDFD
TPDNIKEAAIKAIKDGFTKYTNVDGILTLKQAIKDKFKRENNIDYELDEIIVSAGGKQ
VIYNLFMASLDKGDEVIIPAPYWVSYPDMVALSLGTPVFVNCGIENNFKLSAEALEPL
ITDKTKWLIINSPNNPTGASYNFEELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFY
TLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGVGSKALIKAMTIIQSQNTSNPCSIS
QMAAIEALNGPQDYIGTNALSFQQKRDLALSILKRVKYFECYKPEGAFYLFVKCDKIF
GHKTKLAKIITNSNDFAEYLLEEAKVAVVPGIAFGLEGYFRISYATSMTELEEACLRI
ERAINVIPTNTGIQ"
misc_feature complement(101757..102947)
/locus_tag="RCA_00420"
/note="aspartate aminotransferase; Provisional; Region:
PRK05764"
/db_xref="CDD:180244"
misc_feature complement(101766..102848)
/locus_tag="RCA_00420"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(102207..102209,102231..102236,
102240..102242,102327..102329,102423..102425,
102573..102575,102645..102653))
/locus_tag="RCA_00420"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(102111..102113,102120..102122,
102207..102215,102348..102350,102543..102545,
102642..102644))
/locus_tag="RCA_00420"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(102231..102233)
/locus_tag="RCA_00420"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 103220..104227
/locus_tag="RCA_00425"
/db_xref="GeneID:11860396"
CDS 103220..104227
/locus_tag="RCA_00425"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299146.1"
/db_xref="GI:379022485"
/db_xref="GeneID:11860396"
/translation="MLGKIKDKIKHDCLIIMDIPNFIKNKILEFKNYISDCKYKFSHI
AETNYQLGLDHLYRGNLNDALLRFKLVDKFFNPNNSKVYYQLGLVYFLKNNYRQAIEY
LEKSNEKYKTVFINFLKNYNDITEIPQEIWGQYRDLTAKYYPTIFNNDKNINLPYRFV
NEALKQISDVPDNYSILDLGSNIGLVGYEIQKYFPESFTLTGVEISALMNDLQETYYP
NTKIYDQIYNISINKFLSQNSNKFDIIFNFCGLSFTNNLVEYFNLIYSSLSKQGYFAL
CLPTSVKTQFSVKRKEFIFNLNEINNILQKNNFTIFTSEEIILAEHNKYSIIVCCKKT
T"
misc_feature 103346..103552
/locus_tag="RCA_00425"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
misc_feature 103364..>103588
/locus_tag="RCA_00425"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature order(103364..103369,103376..103381,103469..103474,
103478..103483,103490..103495,103562..103567,
103574..103579,103586..103588)
/locus_tag="RCA_00425"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(103373..103375,103409..103411,103421..103423,
103430..103432,103478..103480,103514..103516,
103526..103528,103535..103537,103571..103573)
/locus_tag="RCA_00425"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 103745..104053
/locus_tag="RCA_00425"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(103754..103774,103829..103834,103904..103912,
103958..103960)
/locus_tag="RCA_00425"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 104202..104999
/locus_tag="RCA_00430"
/db_xref="GeneID:11860397"
CDS 104202..104999
/locus_tag="RCA_00430"
/note="COG2853 Surface lipoprotein"
/codon_start=1
/transl_table=11
/product="VacJ lipoprotein"
/protein_id="YP_005299147.1"
/db_xref="GI:379022486"
/db_xref="GeneID:11860397"
/translation="MFVVRKQHKSMRIVIILSIILSIILCSLFARADLEYVDNDIYNY
NGGRNENGCLEVYDPYEKFNRKVFAFNSALDYIILRPLAVGYKNITNDYVKARVNSLV
SNIDTLLTAVNYGLQLNYDKTMKSVWRFLINTTLGIGGLFDVAGKVGLPSDRQTFGNT
LAHYGVAPGPYLVLPIIGSTNARDMTDPIFTNYVLNPLMYYTRNDFELGVLVVSKINN
RCVVLPFSDYVMKNSTDPYVAIRSALHRAREASVQYPKNFKCPKPKN"
misc_feature 104286..104993
/locus_tag="RCA_00430"
/note="Surface lipoprotein [Cell envelope biogenesis,
outer membrane]; Region: VacJ; COG2853"
/db_xref="CDD:32681"
gene 105016..105615
/locus_tag="RCA_00435"
/db_xref="GeneID:11860398"
CDS 105016..105615
/locus_tag="RCA_00435"
/note="COG2854 ABC-type transport system involved in
resistance to organic solvents, auxiliary component"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_005299148.1"
/db_xref="GI:379022487"
/db_xref="GeneID:11860398"
/translation="MHKMITGLFLLVITFSAYSNEKVPAGLNDYITNLVNEASITLNN
SSLSQEAKISKARELIYNNLDFNWMARYTLGRNGVKTLSNEQIREFIKIYSKYVTKAY
TDLIKDYKGAKPKIVGVRALNSTDFMVAMNIISNKGQDPIKVEYLIREMKKDGKGFFK
VSDIITEGISLIGAQQDEFTNTLKNEGFDQLIQNLQSRS"
misc_feature 105016..105612
/locus_tag="RCA_00435"
/note="ABC-type transport system involved in resistance to
organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2D; COG2854"
/db_xref="CDD:32682"
gene 106631..107698
/gene="alr"
/locus_tag="RCA_00440"
/db_xref="GeneID:11860399"
CDS 106631..107698
/gene="alr"
/locus_tag="RCA_00440"
/EC_number="5.1.1.1"
/note="COG0787 Alanine racemase"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_005299149.1"
/db_xref="GI:379022488"
/db_xref="GeneID:11860399"
/translation="MSLCTLAINLSAIKNNYFLLQDICKTSLVGAVVKADGYGLGAVQ
ISKALIEENCRHFFVASSEEGVNVRKALGIDVNILVLNGVFEHDALELIEYNLIPILN
NLKQIEIWQQFGNLKNLLLPCYLHFNTGINRLGLSSNEIEQLINNRDLLKGLNLQYII
SHLAISEEIDNPYNLEQLNKFKAYLRYFPSIKASLANSGGIFLGQDYHFDLVRPGAAL
YGLNPLMQNPVTLKAPIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGYSRNF
SNQGKVFINGRSVPIVGRVSMDLINIDVTDLPPSDIFLGQEVEIIGNHCTPDKIASII
GTIGYEVLTSLGNRYRRKYTR"
misc_feature 106631..107689
/gene="alr"
/locus_tag="RCA_00440"
/note="alanine racemase; Reviewed; Region: alr; PRK00053"
/db_xref="CDD:178827"
misc_feature 106640..107689
/gene="alr"
/locus_tag="RCA_00440"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430"
/db_xref="CDD:143481"
misc_feature order(106724..106726,106730..106732,106742..106744,
106871..106873,107006..107008,107027..107029,
107114..107116,107219..107224,107267..107278,
107375..107377,107432..107434,107516..107521,
107645..107647)
/gene="alr"
/locus_tag="RCA_00440"
/note="active site"
/db_xref="CDD:143481"
misc_feature order(106724..106726,106730..106732,106742..106744,
106871..106873,107027..107029,107114..107116,
107219..107224,107267..107278,107645..107647)
/gene="alr"
/locus_tag="RCA_00440"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143481"
misc_feature order(106730..106735,106808..106810,106817..106822,
106934..106939,107021..107032,107114..107116,
107120..107122,107336..107347,107351..107353,
107363..107368,107372..107380,107417..107419,
107432..107434,107450..107452,107522..107527,
107633..107638,107645..107650,107672..107674)
/gene="alr"
/locus_tag="RCA_00440"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143481"
misc_feature order(106730..106732,106742..106744,107027..107029,
107114..107116,107375..107377,107432..107434,
107516..107521,107645..107647)
/gene="alr"
/locus_tag="RCA_00440"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143481"
misc_feature order(106730..106732,107375..107377)
/gene="alr"
/locus_tag="RCA_00440"
/note="catalytic residues [active]"
/db_xref="CDD:143481"
gene 107933..108712
/locus_tag="RCA_00445"
/db_xref="GeneID:11860400"
CDS 107933..108712
/locus_tag="RCA_00445"
/note="COG0767 ABC-type transport system involved in
resistance to organic solvents, permease component"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_005299150.1"
/db_xref="GI:379022489"
/db_xref="GeneID:11860400"
/translation="MLLNIANAVGKRTIKFAQNIGSFSLFSFAAVSSIIRPPLYFSLI
IRQLLFIGFYSLPVVTMTTFFSGAVLALQSYNGFSRFSAESSIATVVVLSLTRELGPV
LVGLMVAGRVGASIAAEIATMRVTEQVDALYTLSTDPIKYLVFPRVITAMLTMPCLVL
IGDVIGVMGGYLVGVYKLGFNSTAYLTSTFQYLEPIDVISGLVKAGVFGFIISIISCY
SGYYSGKGAKGVGRATTSAVVNSSILILISNYLITELFFKV"
misc_feature 108059..108649
/locus_tag="RCA_00445"
/note="Permease; Region: Permease; pfam02405"
/db_xref="CDD:145511"
gene 108715..109476
/locus_tag="RCA_00450"
/db_xref="GeneID:11860401"
CDS 108715..109476
/locus_tag="RCA_00450"
/note="COG1127 ABC-type transport system involved in
resistance to organic solvents, ATPase component"
/codon_start=1
/transl_table=11
/product="ribonucleotide ABC transporter ATP-binding
protein"
/protein_id="YP_005299151.1"
/db_xref="GI:379022490"
/db_xref="GeneID:11860401"
/translation="MNAKEEFKIKIRSLYKSFANHKVLDGIDLDVKNGSSLVILGGSG
SGKSVLIKNIVGLIKPDKGKIFINNVEIQDISSKRKFEIMDSIGFLFQGGALFDSLNV
RDNITFETKKLSKKEKNDLAGAKLNSVGLSPRILDLYPSELSGGMQKRVALARAICST
PSILFLDEPTTGLDPIMANVINELIIKIQEELGATMITITHDMIHAKKIAKEVAMIYQ
GKIKWYGSKDEMCNSDNPYLKQFINGLTTGPIDFN"
misc_feature 108715..109470
/locus_tag="RCA_00450"
/note="ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: Ttg2A;
COG1127"
/db_xref="CDD:31324"
misc_feature 108739..109437
/locus_tag="RCA_00450"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 108835..108858
/locus_tag="RCA_00450"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(108844..108849,108853..108861,108988..108990,
109213..109218,109315..109317)
/locus_tag="RCA_00450"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 108979..108990
/locus_tag="RCA_00450"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 109141..109170
/locus_tag="RCA_00450"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 109201..109218
/locus_tag="RCA_00450"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 109225..109236
/locus_tag="RCA_00450"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 109303..109323
/locus_tag="RCA_00450"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 109519..109767
/locus_tag="RCA_00455"
/db_xref="GeneID:11860402"
CDS 109519..109767
/locus_tag="RCA_00455"
/codon_start=1
/transl_table=11
/product="alanine racemase"
/protein_id="YP_005299152.1"
/db_xref="GI:379022491"
/db_xref="GeneID:11860402"
/translation="MLRNLLCVIIFLGINLNVYSVNNSSYKADDIIKIVIILGIIILI
FSPAKFRIVVIGTILGLTFAYFTYKYIVPIFISLLNGP"
gene 109845..110138
/gene="rpmB"
/locus_tag="RCA_00460"
/db_xref="GeneID:11860403"
CDS 109845..110138
/gene="rpmB"
/locus_tag="RCA_00460"
/note="COG0227 Ribosomal protein L28"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L28"
/protein_id="YP_005299153.1"
/db_xref="GI:379022492"
/db_xref="GeneID:11860403"
/translation="MSRKCDLTGVGVLYGNNVSHSQRKTRRRFEPNLRSVKFKSDITS
GAYRLLVNARCISSVEKAGGFDAYILKADDNVLSSAARAIKKKIIQTKTAKSL"
misc_feature 109845..110075
/gene="rpmB"
/locus_tag="RCA_00460"
/note="50S ribosomal protein L28; Reviewed; Region: rpmB;
PRK00359"
/db_xref="CDD:178987"
gene 110135..110371
/locus_tag="RCA_00465"
/db_xref="GeneID:11860404"
CDS 110135..110371
/locus_tag="RCA_00465"
/note="COG0254 Ribosomal protein L31"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_005299154.1"
/db_xref="GI:379022493"
/db_xref="GeneID:11860404"
/translation="MKSGIHPEYKKLLIKVGSDVFKTMSTHPTGEILMDVDFRKHPAW
NKDSGNVVNQSNKSVSDFNKRFSGLSFGSKKGAS"
misc_feature 110135..110368
/locus_tag="RCA_00465"
/note="50S ribosomal protein L31; Provisional; Region:
PRK01397"
/db_xref="CDD:179294"
gene 110662..110738
/locus_tag="RCA_t05293"
/db_xref="GeneID:11860405"
tRNA 110662..110738
/locus_tag="RCA_t05293"
/product="tRNA-Met"
/db_xref="GeneID:11860405"
gene 111144..111803
/gene="engB"
/locus_tag="RCA_00470"
/db_xref="GeneID:11860406"
CDS 111144..111803
/gene="engB"
/locus_tag="RCA_00470"
/note="COG0218 Predicted GTPase"
/codon_start=1
/transl_table=11
/product="GTP-binding protein YsxC"
/protein_id="YP_005299155.1"
/db_xref="GI:379022494"
/db_xref="GeneID:11860406"
/translation="MTNNEKVINNKKSTDSSKLFRHQARFVAGAMNINQIPNFLLPEI
AFIGKSNVGKSSLINTICNNKNLAKVSNIPGRTGQINFFNLADKLIIVDLPGYGFANV
PISVKEQWKVLISYYLRNSNNLRLVNLLIDSRRGIKENDKKVAELLLKNKRSFQIIFT
KCDKVTDCKNLTDEAQNFLTTLHYSCNVMYVSSRSKEGARELKASLAKCIIKPQRSKG
R"
misc_feature 111195..111773
/gene="engB"
/locus_tag="RCA_00470"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature 111270..111773
/gene="engB"
/locus_tag="RCA_00470"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature 111285..111308
/gene="engB"
/locus_tag="RCA_00470"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature order(111291..111311,111351..111359,111366..111374,
111420..111422,111624..111626,111630..111632,
111717..111722)
/gene="engB"
/locus_tag="RCA_00470"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature 111363..111383
/gene="engB"
/locus_tag="RCA_00470"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature 111372..111374
/gene="engB"
/locus_tag="RCA_00470"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature 111420..111431
/gene="engB"
/locus_tag="RCA_00470"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature order(111429..111440,111459..111503,111510..111515)
/gene="engB"
/locus_tag="RCA_00470"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature 111621..111632
/gene="engB"
/locus_tag="RCA_00470"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature 111717..111725
/gene="engB"
/locus_tag="RCA_00470"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene 111949..112074
/locus_tag="RCA_00475"
/db_xref="GeneID:11860407"
CDS 111949..112074
/locus_tag="RCA_00475"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_005299156.1"
/db_xref="GI:379022495"
/db_xref="GeneID:11860407"
/translation="MCSPKYIVRDHINLRSLSLMSQIDENFSQKISKISDFWYFR"
gene 112598..112885
/locus_tag="RCA_00480"
/db_xref="GeneID:11860408"
CDS 112598..112885
/locus_tag="RCA_00480"
/note="COG3702 Type IV secretory pathway, VirB3
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system protein VirB3"
/protein_id="YP_005299157.1"
/db_xref="GI:379022496"
/db_xref="GeneID:11860408"
/translation="MAGALASDLLFVGLTRPPMIFGVSIKFAALNMIMTMIFFIWNNG
IMILFIATVLHLIAYIICFKEPRFIELYLNKMSRTSQCPNKFYYRANSYGI"
misc_feature 112598..112882
/locus_tag="RCA_00480"
/note="type IV secretion system protein VirB3;
Provisional; Region: PRK13899"
/db_xref="CDD:139959"
gene 113140..115557
/locus_tag="RCA_00485"
/db_xref="GeneID:11860409"
CDS 113140..115557
/locus_tag="RCA_00485"
/note="COG3451 Type IV secretory pathway, VirB4
components"
/codon_start=1
/transl_table=11
/product="type IV secretion system ATPase VirB4"
/protein_id="YP_005299158.1"
/db_xref="GI:379022497"
/db_xref="GeneID:11860409"
/translation="MKLFRTRAAKEFRSKQERPTSHFIPYKCHWDSNTILTKDNSLLQ
VIKINGFSFETADDEDLDIKKNIRNALLKNMSSGNIVMYFHTIRRRKAVIFDDTEFTY
DPTVKVPNDFITYLGVEWRKKHAGSKSFFNELYISILYKPDTGGAAIVEYFLKKLRQK
SNKIAWENDMKEMKENLQEMSTRVINTFRSYGARLLGVRQTPSGNYCEILEFLSSLVN
CGDSPGPIALPRGTIDEYLPTHRLFFDSRTIEARSPLGKKYAGIISILEYGPNTSAGI
FDGFLQMPFEFVMTQSFVFANRTVAIGKMQLQQNRMIQAGDKATSQIVEISTALDMAT
SGDIGFGEHHLSLLCSANSIKALEDILSMASVELSNSGIQPVREKVNMEPSYWGQLPG
NMEYIVRKSTINTLNMASFASQHNYPLGKIKDNHWGEYVTVLDTTSGTPFYFNFHVRD
VGHTLIIGPTGAGKTVLMNFLCAEAQKFKPRMFFFDKDRGAEIFIRALNGVYTVIDPG
LKCNFNPLQLEDTSENRTFILEWLRVLVTSNGESLTAQDNKILSQAVSGNFRLERKDR
RLSNVIAFLGIDTPNSLASRIAMWVGKGSHAKIFDNEIDDIDLQKARVFGFDMTELLK
DPISLAPVLLYIFHRINISLDGQKTMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTF
VIFATQSVEDAAKSRISDTLIQQTATQIFLPNLKATDIYRSAFMLSQREYILIKTTDP
TTRYFLIKQGVDAVVAKVNLDGMNNIISVLSGRVETVILLDQIREKYGNDPDKWLPIF
YEAVKTL"
misc_feature 113140..115554
/locus_tag="RCA_00485"
/note="type IV secretion system ATPase VirB4; Provisional;
Region: PRK13898"
/db_xref="CDD:172418"
misc_feature 113719..114336
/locus_tag="RCA_00485"
/note="CagE, TrbE, VirB family, component of type IV
transporter system; Region: CagE_TrbE_VirB; pfam03135"
/db_xref="CDD:111973"
misc_feature 114469..115197
/locus_tag="RCA_00485"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 114511..114534
/locus_tag="RCA_00485"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(114520..114525,114529..114537,114775..114777,
115099..115104)
/locus_tag="RCA_00485"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 114766..114777
/locus_tag="RCA_00485"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 114994..115023
/locus_tag="RCA_00485"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 115087..115104
/locus_tag="RCA_00485"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 115111..115122
/locus_tag="RCA_00485"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 115186..115197
/locus_tag="RCA_00485"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 115699..119058
/locus_tag="RCA_00490"
/db_xref="GeneID:11860410"
CDS 115699..119058
/locus_tag="RCA_00490"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_005299159.1"
/db_xref="GI:379022498"
/db_xref="GeneID:11860410"
/translation="MQLFPRSIIITLVISFVINLGLVTKTHAKDTLDSIIDVLSGLTC
ETQGVGDLLRSEFSHTCIVAPFFTFAVMNLVSPVLYMNTFLKLKINDNDLFSKNEHDD
FGYFPGGQCTRENRIDPNKPELRFALCSNAKLIVARAGAVAKSALAIAKAVLTGSDPW
DDIKEAWKNNKKDYYVPYSGKPGDDGFAFDVGFPVIYWKVIQDKDRICVSTKGFTGDV
PVGCKYMKEPFPKSMYNNFMDVGDKDLIENTNKTPTDPLALVSCSSAGGGCYQKAYNA
SKTAVVMTSPLIECIRQMIARLLISKDVCSFDNVSQVINLASRQDSALFQFQVRMYKI
VAAFLTLYVMFFGFKLLLAGEVPPKSEYINFILKMIFVTYFSIGINITPGSGSPYDRL
DGMIQWAFPFLLDGINALASWVMNAAPSNLCKFNGPGISYDGSVSYIALWDALDCRVA
HYLGLDILSTLLVENAYRSHDFLNFDFFSFSAPPYIYLLIPAIISGNMMLVSLALAYP
LLVISVAAFMVNATIMCMISIVILGILAPLFVPMFLFTYTRNYFDSWVKLMISFLLQP
MVVVTFMITMFSVYDYGFYGKCQYKSKLIHNSIENLAQGSTSSRDVLIFYINNDWNDK
SQYPTNEDVESCQNSLGYMLNNPITTAFNFTKNSVSEIVGSKSGDTSTDKFLAKFQFL
SGVILGPGMFFMSPKVVFEKIKNILLALVTACFTLYLMYHVSSQLAEFAADMTEGVAL
NNVAIKPQAIFKAAMALSATVAGAATKGLDQVASRRGGVSDLAGGLGGEVRDNVAASG
GVSTPTVMQTTLSSVATASPKTVSSEARSDVVTTTPASPEVVSLPSSIRTSIPISEPQ
SNIKSESARKIISDNNQESKKEIDNTPPLQEKVDNASKGSGVIDYSFNLKEHDNPTGV
KQIRENAEIRDKRAEVEKAWNELVASGGGRIRDQQGEEISERCANAEKVWDELVKNGV
VTEKKDNSATNKFDKLADELNKLEKAKVEENQNIENDIKEENTTTSPQEKINSTSKGS
GVIDYSFNLKEHDNPTGVKQIRENAEIRDKRAEVEKAWNELVASGGGRIRDQQGEEIS
ERRANAEKVWDELVKNGVVTEKKDNSSNENS"
misc_feature 116557..118023
/locus_tag="RCA_00490"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 119045..121063
/locus_tag="RCA_00495"
/db_xref="GeneID:11860411"
CDS 119045..121063
/locus_tag="RCA_00495"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="TrbL/VirB6 plasmid conjugative transfer protein"
/protein_id="YP_005299160.1"
/db_xref="GI:379022499"
/db_xref="GeneID:11860411"
/translation="MKTLKTLKIFIMVCIASVSLASFAGFGESCSSLPATSDKYLETD
TAYGYIIRNIDMKDPRGNCDSAVPGITFCFKNIEGSSSPCTMYTLNEGDSKKISDLST
DNNPDLGANPVLQNIVLTVKKLDNDLCLIMPTSRGPMPVACKSLSANPPPNPPDYENC
NIGKNCYTGASYSQSLINFSGLAVQCLSETLNKIFFVGNSCSSQDQNSRITNLTAFST
FQGYLKRTIGAALILYIMFFAFNMALNKEYASTEKIALFIIKFLFVAYFSIGLGPLDF
SSGQPTKENGMLKYGLPLLTGAAPDFAQMIFNAAGARGLCQFDNSKYKDGYKFYGLWD
AIDCRIGYYLGLDLLYNIDKNRVLGRSVGNGPSGNNEKIPNLGNPDKNSPNDLSKAGS
LRFFTVMFGFFMAGNVIIFAAGLVFSVIFLSILLYFITHYLVCMITIYVMTYVSPIFI
PMALFTRTKAYFDGWLKVCISCTLQPSVIAGFIALLITMYDSAIFKNCEFLRHDYEKG
DIRFSTFELRLPISAADKCQESFGYKMLQYYAGEGWEEHLLILFPIKSIVRDVVSILA
ELLYVLVFSVIFYYFSKSIGRFAADLTNGPNMDAVNARSTKIVDLVKKGAAFLKDAAI
ASQGKPLVGNKLSGGSRRKGRAQSDDTLGSHGRSSDNAKDALSTSRGK"
misc_feature 119591..120988
/locus_tag="RCA_00495"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 121070..123976
/locus_tag="RCA_00500"
/db_xref="GeneID:11860412"
CDS 121070..123976
/locus_tag="RCA_00500"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="VirB6-like protein of the type IV secretion
system"
/protein_id="YP_005299161.1"
/db_xref="GI:379022500"
/db_xref="GeneID:11860412"
/translation="MQSNLLKVLGVLAIVATLVCFIFAALGMIGAVNIGNGCYMRYDA
DGKGGRDSITDTITLNANANYVYTSKMLPDGTTRLIPDPTRYGEWLNTKVLVENSQSV
NLQVVGQVSLCLAYIPQDNVQRTGPGSNLDDNGKMIPIPRVSDSNIPPISLIMDAKNS
EWRNIAELYANDRVLVSISPNFIGTEATVNDAFKGTAVTTDCSQGKTSYEPICGKYSF
YSGQYVNACELKQNYWQGNQHREPCHCVFGCIYKEAVVKWVCDSANAASHCCLGLVCD
SLPAWINHYGTMPESYKDDGSFTFSWSDNLGNLFIDYSNLQCSNNANILPNGKCPDAI
SNRSPKDKDYIGGVHCTSGICNDGDFQKHRRFWYTADGKGGKGPTGLIYQMNDTGSVS
QALPSNLEFAKFVADSDQLPEYKDKDGKYIYKVIYNIPFNSNIEKSYLQYRLWSPTSQ
DASKNTGGYVLNIKQTKCYRENGNSFNDTFNDRGRVQYIIVAGSENPNTSGKSYSPQG
INVDSDGKANIIANGDGYIWMRILNDSNDYKDSDGNYKVHFSTFLKVGSFTVKVMNPL
LQLFKTKVQGAATSIFRNMVCYKASDSSSCTNFFTYIKAILILYVMTYGAMFLLGFTK
INQKELVIRIAKIGVVSGLINGNTFEFFNSYLFDVITGFSDAIIANMSGYSLFTSTNT
ISNPFMFLDAVMSKIFFSQTFIAQLLALLSLGLSGIIYFIITFIALGIVIITALRAMA
VYIMAFMVTCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMIEPVIMMAGIIVLTQ
LFTIYLDFVLGYSVCWKCALPIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMM
GVNMQNIVALVIIAYGMYGYVEFSGRMVVKLTSAAGPSATGMGEAMYNVAEQKTLSQV
GMDAETRKGITGRAESRLKQRNKTLDQAEKNRKHTPQEGGEKTNEESPKPETPK"
misc_feature 122441..123892
/locus_tag="RCA_00500"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 123986..126631
/locus_tag="RCA_00505"
/db_xref="GeneID:11860413"
CDS 123986..126631
/locus_tag="RCA_00505"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299162.1"
/db_xref="GI:379022501"
/db_xref="GeneID:11860413"
/translation="MKILKSLVVLVLFMTVPAKAVDTFSWMSTSFSGLKSLFGCLEVP
EFTSFQEGNIGISLSTAGTWQSTGNAVKKGKLLKINWSTSGITPEPRKYLVLYRIDPR
FSTPQVFIKTYNYTKLQFEALGFPRFVTANNGAIPPDKDLDALSFTKMSDSVKYFNYS
NGHSRIQVNAGDVVNISLVSKDNFFSPNTVDNILTQELDSSVFAASALYTQSNLGNFD
NRIIYLSAEQVCNMIDASRTSVCRGTGTATKYKNTDNGVIVGKPMRTGAVEHFMGLIN
PCPANAGIDTSPACYYDQGRGMIIKVGRQVIKGRDQRFVNSGSTHSSFIYYQATSGGT
MDFTSDWSSTGMFDKSVLMSDWSRNYSGDYNRFVNDINKNDWSANFLYFGRYVMIVEI
GNGTNSISPGDHQNIKLEYLITPNGTLPDSSVRGMPVDYNFATDALQDGYLWLRVVNP
NSNIQGVVSVNYANYTGTTWFSDIVYYGVIKPITDQFRTFSQNFYIKLVKNSAVQNIA
KAALTLYVTIFGLMFVAGALKLTAVEVITRICKIAIVAFLLKEESWDFFNTYFFSVFT
NAIDFFVTNVVGATSSRSNIFGFIDPIFDKYTNGRIWGLLFIELLQIHNGLAFISVIT
IYSLITYFRAILEVIIGYVIAFVGVTIMISLAPFFIILMLFEKTKSLFDNWISILLSY
VVQPTILLIFFLLIDQVLSEQLLKVVVRACWDTLIPIKIGLDLTHLGIPINFSFTLPF
LPGIPFFVPDVPEISSSNILTNNANTFLVLFTTALLFYSYCLMSYGLVTFVNVVVGML
TNVTPARISGNYQERSDPVGAIMHDIDSVTKPIKKATIVPARVFKDKIIDQNYKARKP
EGGGEYTNKFLAERNDRKKEEEVRK"
misc_feature 125117..126550
/locus_tag="RCA_00505"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
gene 126740..130192
/locus_tag="RCA_00510"
/db_xref="GeneID:11860414"
CDS 126740..130192
/locus_tag="RCA_00510"
/note="COG3704 Type IV secretory pathway, VirB6
components"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299163.1"
/db_xref="GI:379022502"
/db_xref="GeneID:11860414"
/translation="MNKNIFITLLISLLLLSSCTGDTCIDPDDFGFIKFNISSRYDLE
EITSRQEGDQVAPWRNSAYKVNGYPLTVMVRPWSYILGDKNTSGQLSAWCPWYGQKND
TTTLAALCVKLQPCLFIDNDMCRPSPTNQNDAAIYNAPCIMTNGVGLYFLIAAKNTDP
NISPDSQRKPQGITQHLGEPPPNNDYAFYSISSTGQFLKAGGINYQYKGEDKSKYAQS
PLYFKIIDKFYNDNSGQYRLVIKSGISDTRPDPLQFLTNLIKKVLFGTSDQDHGIVRK
VYTQIIDTSGYRMSVSAILTLYIMFTGFSFLIGNINLTHVELIIRILKVSIVSILLST
DKAWTFFHDYLFVFFIDGVQQILQIINEASANGPGSQSLLGLLIAPQTLSKLFSLLFV
DWLGFIYIILYLIALYFIFLLIFKATIIYLTALIIIGMIITMGPIFICFMLFNITRSL
FENWLRQLISYAIQPLILFAGIAFISMIIRTEIYSTLGFAVCKHDFPNLGPINEIFGS
FLEEIDPSLGNSIFYWWFPVPMKGGINNFHKAKILVPKDHIRDDGTANGKHCSAYECI
DERYIELPFLDLVKDAKRISNFINGKFVQLDGILLIFVSIYLLSKFNDIAISTAAFIA
GTSGNLTDIQKVNQQSASLATKQMNRPLNYVAKTLSAPVTTRVSAKLEETSMFFAAKF
ENMMMRRLENQALGSAANKAVQNEVKRKYGIDSKDVKMNAITDYENSISGLLENLPKG
NELKAKELSQMKFTQLRDKIAENKYGVKDYDSLSKEQKTELDKLLKDANLRELASDAN
FTRDYQKAYKDAHQDMSGRGIGLFGKNIGVLRSWQEMQHRVKSKRALKEQKRVGIGEK
IYAGYTGITRAALTAIVGKDLRDAYEGNLTSAEWHDFEYNDPRLRTYSEKLKDEEKVR
EFQELQMHINKETLAAQADVLSPEYLARLEQTGRQSDVEYYQELAQRKLIHEVRSRLS
EEDDPVMMGDRFMREKATDSQMRDMIDNAHRKYVQFIDEDRYIRRQEYYDIMHEKAQE
NLEQTYKELKDHFKRDDIKLEEMPVLIAQKLKDTDGGAEIDKKITEEINNFNANVNNY
EYSTEVLNKIEDRKQVITDEVNAQINQINKYRENAKMQTYVKPIVNKGRKLRKLEDHL
RNMK"
misc_feature 127181..128380
/locus_tag="RCA_00510"
/note="Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion]; Region: VirB6;
COG3704"
/db_xref="CDD:33499"
misc_feature 131148..131753
/note="potential frameshift: common BLAST hit:
gi|67458488|ref|YP_246112.1| phosphate acetyltransferase"
gene 131762..131869
/locus_tag="RCA_00525"
/db_xref="GeneID:11860415"
CDS 131762..131869
/locus_tag="RCA_00525"
/note="COG0280 Phosphotransacetylase"
/codon_start=1
/transl_table=11
/product="GTPase EngB"
/protein_id="YP_005299164.1"
/db_xref="GI:379022503"
/db_xref="GeneID:11860415"
/translation="MVTSAMPTTIDVAALSKMADCGQITNAIVDGPLAL"
misc_feature <131765..>131866
/locus_tag="RCA_00525"
/note="Phosphate acetyl/butaryl transferase; Region:
PTA_PTB; cl00390"
/db_xref="CDD:212210"
gene 131936..132013
/locus_tag="RCA_00530"
/db_xref="GeneID:11860416"
CDS 131936..132013
/locus_tag="RCA_00530"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299165.1"
/db_xref="GI:379022504"
/db_xref="GeneID:11860416"
/translation="MRAKQLKYLDQDVMTGILLETRRLF"
gene 133020..133136
/locus_tag="RCA_00535"
/db_xref="GeneID:11860417"
CDS 133020..133136
/locus_tag="RCA_00535"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299166.1"
/db_xref="GI:379022505"
/db_xref="GeneID:11860417"
/translation="MMQKTKKTIISTKDSRVKVFAVLMNEELILAEEVIKFL"
misc_feature <133059..133133
/locus_tag="RCA_00535"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 133360..133680
/locus_tag="RCA_00540"
/db_xref="GeneID:11860418"
CDS 133360..133680
/locus_tag="RCA_00540"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299167.1"
/db_xref="GI:379022506"
/db_xref="GeneID:11860418"
/translation="MKQQIIAEKASKDYNKVLEIDYKAAKAGIKSDKTVMRRLDKIIS
TCFKQLRRKVILNNIKAIMLIERVNKKLKYLGVVQQLLLESKKKKIIKVNSYLVYKII
ILLY"
gene 133694..134398
/gene="trmD"
/locus_tag="RCA_00545"
/db_xref="GeneID:11860419"
CDS 133694..134398
/gene="trmD"
/locus_tag="RCA_00545"
/note="COG0336 tRNA-(guanine-N1)-methyltransferase"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(1)-)-methyltransferase"
/protein_id="YP_005299168.1"
/db_xref="GI:379022507"
/db_xref="GeneID:11860419"
/translation="MSRLHATILTIFPKMFPGTLGHSLAGQALHKNIWSYDIINIRDF
GLTKHKNIDDAAYGGGDGLIMRPDVLGNSIDHALSLNSNAKIYYPSPRGRVFTQSFAK
EMIKTKNIIFLCGRYEGIDERVIQEYSIMEISVGDYILSGGEIPTLTILDCLIRLLPG
VLINQNTLSSESFEEDGEFKGGLECDLYTRPEVWRGIKVPEILLSGNHKLINEWKREQ
SRMITKSRRPELLKDL"
misc_feature 133703..134395
/gene="trmD"
/locus_tag="RCA_00545"
/note="tRNA (guanine-N(1)-)-methyltransferase; Reviewed;
Region: trmD; PRK00026"
/db_xref="CDD:178803"
gene 134653..135069
/gene="rplS"
/locus_tag="RCA_00550"
/db_xref="GeneID:11860420"
CDS 134653..135069
/gene="rplS"
/locus_tag="RCA_00550"
/note="COG0335 Ribosomal protein L19"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L19"
/protein_id="YP_005299169.1"
/db_xref="GI:379022508"
/db_xref="GeneID:11860420"
/translation="MNIIDSFEQKNIAKLTANKNIPDFEAGDTVKVTVKIIDRSIEKD
GKEKLTERFQAYEGVVIAKRNRGITSSFLVRKISHGEGVERRFMTYSPIVHSIDVVKY
GVVRRAKLYYLRNRSGKSARIKERHIPIAKNQAVKA"
misc_feature 134653..135030
/gene="rplS"
/locus_tag="RCA_00550"
/note="50S ribosomal protein L19; Provisional; Region:
rplS; PRK05338"
/db_xref="CDD:180025"
gene complement(135337..135573)
/locus_tag="RCA_00555"
/db_xref="GeneID:11860421"
CDS complement(135337..135573)
/locus_tag="RCA_00555"
/note="COG3750 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299170.1"
/db_xref="GI:379022509"
/db_xref="GeneID:11860421"
/translation="MSEVVVKEQLEQYISKIERLEQEKADLLEEIKNIFQDASSHGFD
VKAMKSILKLKKLDKDKLAEQDAMLELYRDTLGI"
misc_feature complement(135340..135573)
/locus_tag="RCA_00555"
/note="hypothetical protein; Provisional; Region:
PRK13694"
/db_xref="CDD:184250"
gene 135645..136562
/gene="secF"
/locus_tag="RCA_00560"
/db_xref="GeneID:11860422"
CDS 135645..136562
/gene="secF"
/locus_tag="RCA_00560"
/note="COG0341 Preprotein translocase subunit SecF"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecF"
/protein_id="YP_005299171.1"
/db_xref="GI:379022510"
/db_xref="GeneID:11860422"
/translation="MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISVIWIGIYKF
NFGIDFVGGIVIEVRLDQTPDLPKMRQILGELGIGEVVLQNFGSERDLSIRLGSSSEA
NLMENIELIKASLHNNFPYKFEYRKVDFVGPQVGRQLIEAGTMAMLFSFLAIMVYIWV
RFEWYFGLGILITLMHDLILALGFMSMTKLDCNLSTIAAVLTIIGYSVNDSVVIYDRI
RENLRKYYKKNITEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFF
GIIAGTYSSIFISAPILTMFANKKFNNKR"
misc_feature 135678..136544
/gene="secF"
/locus_tag="RCA_00560"
/note="preprotein translocase subunit SecF; Reviewed;
Region: secF; PRK13022"
/db_xref="CDD:183847"
misc_feature <135774..135842
/gene="secF"
/locus_tag="RCA_00560"
/note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549"
/db_xref="CDD:116168"
misc_feature 135975..136541
/gene="secF"
/locus_tag="RCA_00560"
/note="Protein export membrane protein; Region: SecD_SecF;
pfam02355"
/db_xref="CDD:111266"
gene 136676..137938
/locus_tag="RCA_00565"
/db_xref="GeneID:11860423"
CDS 136676..137938
/locus_tag="RCA_00565"
/EC_number="1.6.99.5"
/note="COG1894 NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase I subunit F"
/protein_id="YP_005299172.1"
/db_xref="GI:379022511"
/db_xref="GeneID:11860423"
/translation="MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFII
EEVKQSGLRGRGGAGFSTGMKWSFMPKNSEKPCYLVVNADESEPGTCKDRDILRFEPH
KLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCN
IYLHCGAGAYICGEETALLESLEGKKGMPRLKPPFPAIFGLYGCPTTINNVESIAVVP
TILRRGANWFASIGKPNNTGTKVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGG
WNNLKAIIPGGSSVPLIPKSICETVDMDFDSLRTAGSGLGTGGIIVMNKSTDIVYAIA
RLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICA
LGDAAAWPIQGLIRHFRDEIEERICHLM"
misc_feature 136676..137923
/locus_tag="RCA_00565"
/note="NADH dehydrogenase I subunit F; Provisional;
Region: PRK13596"
/db_xref="CDD:184170"
misc_feature 137396..137554
/locus_tag="RCA_00565"
/note="SLBB domain; Region: SLBB; pfam10531"
/db_xref="CDD:204505"
misc_feature 137663..137800
/locus_tag="RCA_00565"
/note="NADH-ubiquinone oxidoreductase-F iron-sulfur
binding region; Region: NADH_4Fe-4S; smart00928"
/db_xref="CDD:197996"
gene 138101..138898
/locus_tag="RCA_00570"
/db_xref="GeneID:11860424"
CDS 138101..138898
/locus_tag="RCA_00570"
/note="COG0681 Signal peptidase I"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_005299173.1"
/db_xref="GI:379022512"
/db_xref="GeneID:11860424"
/translation="MQIDTKTNTNKTTAQEWKSFAFVVCIALLIRILIMEPFTVPTGS
MKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRIFACEPERGDIVVFRPPNDMS
VRYIKRLIGLPGDKIQLIDDMIYINDKKIERTEVGTYISEEGRKYLKFKETLPNGRTY
FSYKLAPIFGVISDDRYGNTDVFYVPEGKYFFLGDNRDQSNDSRVNLGFVPFENFIAK
AQFIWFSTKITWWDNDIGVINLILKLKPWIESVRLNRIFRNLYNTDE"
misc_feature 138152..138775
/locus_tag="RCA_00570"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature 138206..>138436
/locus_tag="RCA_00570"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(138230..138232,138419..138421)
/locus_tag="RCA_00570"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
misc_feature 138557..138757
/locus_tag="RCA_00570"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
gene 138898..139581
/gene="rnc"
/locus_tag="RCA_00575"
/db_xref="GeneID:11860425"
CDS 138898..139581
/gene="rnc"
/locus_tag="RCA_00575"
/EC_number="3.1.26.3"
/note="COG0571 dsRNA-specific ribonuclease"
/codon_start=1
/transl_table=11
/product="ribonuclease III"
/protein_id="YP_005299174.1"
/db_xref="GI:379022513"
/db_xref="GeneID:11860425"
/translation="MSSFNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYER
LEFLGDAVLNLVITKILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMT
YGEEVAGGRDNPNNIENATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPK
TALQEWAQASDHHLPIYCLIKREGAAHSSTFTVLVKVKDYEQIGIGYSIKEAEKNAAR
SLLHRLKND"
misc_feature 138898..139578
/gene="rnc"
/locus_tag="RCA_00575"
/note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
/db_xref="CDD:178863"
misc_feature 138952..139347
/gene="rnc"
/locus_tag="RCA_00575"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(139024..139029,139036..139041,139048..139050,
139057..139062,139069..139074,139078..139086,
139114..139116,139282..139284,139309..139311)
/gene="rnc"
/locus_tag="RCA_00575"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
misc_feature order(139024..139026,139033..139035,139045..139047,
139252..139254,139261..139263)
/gene="rnc"
/locus_tag="RCA_00575"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(139033..139035,139252..139254,139261..139263)
/gene="rnc"
/locus_tag="RCA_00575"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature 139369..139569
/gene="rnc"
/locus_tag="RCA_00575"
/note="Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III; Region:
DSRM; cd00048"
/db_xref="CDD:28930"
misc_feature order(139369..139371,139387..139392,139516..139527,
139534..139536)
/gene="rnc"
/locus_tag="RCA_00575"
/note="dsRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:28930"
gene 139574..140461
/locus_tag="RCA_00580"
/db_xref="GeneID:11860426"
CDS 139574..140461
/locus_tag="RCA_00580"
/note="COG1159 GTPase"
/codon_start=1
/transl_table=11
/product="GTP-binding protein Era"
/protein_id="YP_005299175.1"
/db_xref="GI:379022514"
/db_xref="GeneID:11860426"
/translation="MTKQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR
SIITGIITLKDTQVILYDTPGIFEPKGTLEKAMVRCAWSSLHSADLVMLIIDSLKPFD
DVTHNILDKLCSLNIVPVFLLNKIEIESKYLNNLKAFLMENHPNSLLFPISALSGKNI
DRLLEYITSKAKIAPWLYAEDDITDLPMRFIAAEITREQLFLNLQQELPYKLTVQTEK
WEELKDKSVKINQVIVVARESYKTIILGKNGSKIKEIGAKSRMQMEQFFSCPIHLFLF
VKVRELWENNQEFYQYMKI"
misc_feature 139604..140452
/locus_tag="RCA_00580"
/note="GTPase Era; Reviewed; Region: era; PRK00089"
/db_xref="CDD:178854"
misc_feature 139604..140086
/locus_tag="RCA_00580"
/note="E. coli Ras-like protein (Era) is a multifunctional
GTPase; Region: Era; cd04163"
/db_xref="CDD:206726"
misc_feature 139616..139639
/locus_tag="RCA_00580"
/note="G1 box; other site"
/db_xref="CDD:206726"
misc_feature order(139622..139642,139682..139684,139694..139702,
139766..139768,139943..139948,139952..139954,
140030..140035)
/locus_tag="RCA_00580"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206726"
misc_feature order(139661..139663,139667..139711)
/locus_tag="RCA_00580"
/note="Switch I region; other site"
/db_xref="CDD:206726"
misc_feature 139700..139702
/locus_tag="RCA_00580"
/note="G2 box; other site"
/db_xref="CDD:206726"
misc_feature order(139754..139771,139829..139834)
/locus_tag="RCA_00580"
/note="Switch II region; other site"
/db_xref="CDD:206726"
misc_feature 139757..139768
/locus_tag="RCA_00580"
/note="G3 box; other site"
/db_xref="CDD:206726"
misc_feature 139943..139954
/locus_tag="RCA_00580"
/note="G4 box; other site"
/db_xref="CDD:206726"
misc_feature 140030..140038
/locus_tag="RCA_00580"
/note="G5 box; other site"
/db_xref="CDD:206726"
misc_feature 140192..140422
/locus_tag="RCA_00580"
/note="KH domain; Region: KH_2; pfam07650"
/db_xref="CDD:203707"
gene 140654..141127
/gene="ruvC"
/locus_tag="RCA_00585"
/db_xref="GeneID:11860427"
CDS 140654..141127
/gene="ruvC"
/locus_tag="RCA_00585"
/EC_number="3.1.22.4"
/note="COG0817 Holliday junction resolvasome, endonuclease
subunit"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_005299176.1"
/db_xref="GI:379022515"
/db_xref="GeneID:11860427"
/translation="MIVLGIDPALGSLGWAVVVRQSTKLKYLASGTIKTNSKDEIHHR
LAFINSTLEKVILEYQPNMAAIEEIFVNTNSLTSLKLGYARGVIMSLIGRYNLGLREF
KPNMVKKSVTGYGHAEKEQILHMIKLLLPGTSLITNSDEGDAIAIAYTCLVTKSY"
misc_feature 140657..141118
/gene="ruvC"
/locus_tag="RCA_00585"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cd00529"
/db_xref="CDD:29627"
misc_feature order(140672..140674,140852..140854,141071..141073,
141080..141082)
/gene="ruvC"
/locus_tag="RCA_00585"
/note="active site"
/db_xref="CDD:29627"
misc_feature order(140684..140686,140753..140755,140870..140872,
140891..140893,140966..140968,140975..140977,
141008..141010)
/gene="ruvC"
/locus_tag="RCA_00585"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature order(140789..140791,140798..140800,140861..140863,
140876..140878,140885..140890,140897..140902,
140906..140911,140918..140920,140930..140935)
/gene="ruvC"
/locus_tag="RCA_00585"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene 141129..141821
/locus_tag="RCA_00590"
/db_xref="GeneID:11860428"
CDS 141129..141821
/locus_tag="RCA_00590"
/note="COG0565 rRNA methylase"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_005299177.1"
/db_xref="GI:379022516"
/db_xref="GeneID:11860428"
/translation="MNPIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQ
ARSNAVGAVNIIDNTKIYDNLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLSLDYPNS
AKVGIMFGRENNGLSNEEISLANKIITINTTEFSSLNIAQAVIIICYELFRNFTLRED
IHNIQKLATKEEIEHFLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEV
QILQGIIKSLYT"
misc_feature 141129..141818
/locus_tag="RCA_00590"
/note="rRNA methylase [Translation, ribosomal structure
and biogenesis]; Region: LasT; COG0565"
/db_xref="CDD:30911"
misc_feature 141129..>141581
/locus_tag="RCA_00590"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
cl00362"
/db_xref="CDD:212202"
gene complement(141972..143060)
/locus_tag="RCA_00595"
/db_xref="GeneID:11860429"
CDS complement(141972..143060)
/locus_tag="RCA_00595"
/note="COG3660 Predicted nucleoside-diphosphate-sugar
epimerase"
/codon_start=1
/transl_table=11
/product="putative nucleoside-diphosphate-sugar epimerase"
/protein_id="YP_005299178.1"
/db_xref="GI:379022517"
/db_xref="GeneID:11860429"
/translation="MKIYVLTDERTGNTHQAIALAEKLATDYTLIKLQYNCLAKLPNF
LLKYYPIHIKSELLQDILDQSLPDMIIAAGRRTTVLAFYLKKKFKDIKLIQIMHPNLP
YNIFDAVILPYHDCHLSSSRNLIAGSSKNSKIINTINYFLDIVVKPRYDKVDSSFRGN
DIKHKNIIAINGAINNVTDKFAAVSLELQKYYPDLKQFIAVIIGGNNKKFNFNKDEAI
LFSSLLNKIYTNQKIPFFISFSRRTPLEVKSIIKNNMPSSTIIYDPNKDIGYNPYIAM
LANAKYIIVTADSISMCSEAASSGKPLYIFYPPNFNSSKHKIFIKQLVEQKIARIFDE
SVISLEEYNYKSLNESERVAEIIKSLIK"
misc_feature complement(141975..143060)
/locus_tag="RCA_00595"
/note="Predicted nucleoside-diphosphate-sugar epimerase
[Cell envelope biogenesis, outer membrane]; Region:
COG3660"
/db_xref="CDD:33458"
misc_feature complement(141990..143027)
/locus_tag="RCA_00595"
/note="Mitochondrial fission ELM1; Region: Mito_fiss_Elm1;
pfam06258"
/db_xref="CDD:191482"
gene complement(143057..144163)
/locus_tag="RCA_00600"
/db_xref="GeneID:11860430"
CDS complement(143057..144163)
/locus_tag="RCA_00600"
/note="COG0489 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="Mrp protein"
/protein_id="YP_005299179.1"
/db_xref="GI:379022518"
/db_xref="GeneID:11860430"
/translation="MAKLHQRHIIDKIQNITFKDGTFLKQVISDIVIKDNNIGFSIDI
SGKTKLEAEEIRLKAINKLNKISEIGNITIVFTSHKTSERKSQKPKHFVENVKKIILV
ASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIPHIFGINEVPKTIKGQIIP
ITAKNRYLSKFAYREEFEGNTEHSTATYKEVCKDASIGSTYKLPLELKFGKISTIQIM
SIGFFVKDYSAIIWRGPMASKTIYQLLSVTKWDNLDYLIIDMPPGTGDIHLSILENYH
LDGVIIVTTPQKISEIDVIRSIDLYQKLGLPILGIIENMSYMLEDNSGHHLSQKYNIP
LMAQIPITLQIADACDKSLPLTDLLTLPLEKYLS"
misc_feature complement(143117..144043)
/locus_tag="RCA_00600"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Mrp;
COG0489"
/db_xref="CDD:30835"
misc_feature complement(<143729..143869)
/locus_tag="RCA_00600"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(143531..143668)
/locus_tag="RCA_00600"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature complement(143141..>143473)
/locus_tag="RCA_00600"
/note="MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions...; Region:
MRP-like; cd02037"
/db_xref="CDD:73300"
gene 144264..145304
/locus_tag="RCA_00605"
/db_xref="GeneID:11860431"
CDS 144264..145304
/locus_tag="RCA_00605"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="protease activity modulator HflK"
/protein_id="YP_005299180.1"
/db_xref="GI:379022519"
/db_xref="GeneID:11860431"
/translation="MLNKKYILILKKSPWQDFDSNKVDNIFTRPRKNQFNFDKFQFQF
NFNAKTIILAIVVVAALWLASGIYEIKEGEEAAVIRFGRFVRKGYPGLNYHLPAPFEK
IIVEKVKQSRRIEIGYRTNSSIRSGGDNTKNIAGESIMLTGDENIVALNCDVMWHINN
LEDFIFNVQRPEETVKSTVESAVREVIGNTPISWVLSDQKQEITYKIEKLAQKILDSY
NAGVMIEKVQLLKAEPPAEVIDAYRDVQTSKADKEKEINQAQAYNNKILPEARGAAAK
IIQEAEGYREEVISKAEGDSQRFNAIYKQYTTGRQVTRDRLYLEVVEEILSGSNKTII
NNVLLPHMAIKP"
misc_feature 144456..145241
/locus_tag="RCA_00605"
/note="Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflK; cd03404"
/db_xref="CDD:48216"
misc_feature 144462..145268
/locus_tag="RCA_00605"
/note="HflK protein; Region: hflK; TIGR01933"
/db_xref="CDD:130988"
gene 145482..146342
/locus_tag="RCA_00610"
/db_xref="GeneID:11860432"
CDS 145482..146342
/locus_tag="RCA_00610"
/note="COG0330 Membrane protease subunits,
stomatin/prohibitin homologs"
/codon_start=1
/transl_table=11
/product="hflc protein (hflc)"
/protein_id="YP_005299181.1"
/db_xref="GI:379022520"
/db_xref="GeneID:11860432"
/translation="MQQKVYYIIFTIVFGLMLISSSLFSVDQRQSAVVFQFGEAVRTI
ENPGLHIKIPFIQNVEFFDKRLLDVEVEAKELTAADGKRVIVDAYAKFQINNPVMFYK
TVHNYQGVKIRLTRNLESSMRKVIGKISLSSLLSQERSNVMLNILNQVDGEAKSFGIN
VVDVRILRADLPQENSAAIYRRMQTAREKEATQIRAEGQEESVRIRSKADKESKIILA
KAYRDAQIIKGDGDEKAAKIYNAAYSVDPEFYKFYRSLLVYKNSLKKEDTKFVISPEA
EVFKYLNLAK"
misc_feature 145503..146330
/locus_tag="RCA_00610"
/note="FtsH protease regulator HflC; Provisional; Region:
PRK11029"
/db_xref="CDD:182913"
misc_feature 145548..146270
/locus_tag="RCA_00610"
/note="Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma...;
Region: Band_7_HflC; cd03405"
/db_xref="CDD:48217"
gene 146363..147898
/locus_tag="RCA_00615"
/db_xref="GeneID:11860433"
CDS 146363..147898
/locus_tag="RCA_00615"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="Holliday junction resolvase"
/protein_id="YP_005299182.1"
/db_xref="GI:379022521"
/db_xref="GeneID:11860433"
/translation="MFKYIFAVIVIILLNNAVLAKENIKKTGKILEENEFTEINSVPL
KVSEAARYSFADIVEPLIPAVVNISTIEYVNSKSENAEKDPLQEKKPLDFINDFLERL
NIPLNLEEVDQNPKNVPLGSGFIIEPNGLIVTNYHVIANVEKINIKLADNTELPAKLI
GSDTKTDLALLKIDREEPLPFVEFGDSNDARVGDWIIAIGNPFGNLGGTVTAGIISSK
GRDIDIDTDNIVDNFIQTDAAINNGNSGGPMFNWDQKVIGVNTAIFSPLGTNIGIGFA
IPSNTAKPIIERLKKDGKINRGRLGVTIQDLTEEISEGLGLKDTSGVLVAKVQKDGPG
DKAGIKTGDIIIEFAGIPVKNTKKLRVIIADAPIDQEVKVKILRDKKEFELPIKVTAD
NEEINKDLAERVNKEAVTNKGDNNLSITKNNITFSNLTQELRQKYTIPQDKTGVVITN
INKEENSFKIGDLITNINQENIEDISKLEQLYENAKKSNKQNILLLIERGDRYMFVPL
QVM"
misc_feature 146519..147886
/locus_tag="RCA_00615"
/note="periplasmic serine protease, Do/DeqQ family;
Region: degP_htrA_DO; TIGR02037"
/db_xref="CDD:162670"
misc_feature 146723..147139
/locus_tag="RCA_00615"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature 147254..147523
/locus_tag="RCA_00615"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(147257..147268,147272..147274,147425..147430,
147437..147442)
/locus_tag="RCA_00615"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
misc_feature 147632..147886
/locus_tag="RCA_00615"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
misc_feature order(147632..147634,147638..147640,147782..147787,
147794..147799)
/locus_tag="RCA_00615"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29044"
gene 147993..148742
/locus_tag="RCA_00620"
/db_xref="GeneID:11860434"
CDS 147993..148742
/locus_tag="RCA_00620"
/note="COG1054 Predicted sulfurtransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299183.1"
/db_xref="GI:379022522"
/db_xref="GeneID:11860434"
/translation="MNEKIAILSTYSFVNIEEPANLIPKLLLIAKRKYVRGTILLSKE
GFNGSFSGSYKNVNLVLEELIKLTGPKDVNVKINYSDFHPFQKLKVRLKKEIVAMNVD
GLNVDLFKGEYIESKDWDSFITKQDVIVIDTRNDYEVEIGTFKTAINPYTKTFKQFPA
WVHQNEKLLKGKKIAMFCTGGIRCEKSTSLLKSIGYDDVYHLKGGILQYLEDTQNKNN
LWQGECFVFDDRRAVEDDLSPSERHTRLPST"
misc_feature 147993..148733
/locus_tag="RCA_00620"
/note="hypothetical protein; Validated; Region: PRK01415"
/db_xref="CDD:167229"
misc_feature 148323..148625
/locus_tag="RCA_00620"
/note="Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins; Region: RHOD_YceA; cd01518"
/db_xref="CDD:29081"
misc_feature 148524..148526
/locus_tag="RCA_00620"
/note="active site residue [active]"
/db_xref="CDD:29081"
gene 148764..149138
/locus_tag="RCA_00625"
/db_xref="GeneID:11860435"
CDS 148764..149138
/locus_tag="RCA_00625"
/note="COG2009 Succinate dehydrogenase/fumarate reductase,
cytochrome b subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase cytochrome b-556
subunit"
/protein_id="YP_005299184.1"
/db_xref="GI:379022523"
/db_xref="GeneID:11860435"
/translation="MTKTKQEIYNKRPISPHLSIYKMQISSTLSILHRITGVALFFAV
SILAWWLILSKYDNNYLYLASCYIIKICLVAVSYAWFYHLCNGIRYLFWGIGYCFSIK
AVNITGWCVVICSTLLTILLWV"
misc_feature 148797..149135
/locus_tag="RCA_00625"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase C (SdhC) subunit;
composed of bacterial SdhC and eukaryotic large cytochrome
b binding (CybL) proteins. SQR catalyzes the oxidation of
succinate to fumarate coupled to the...; Region:
SQR_TypeC_SdhC; cd03499"
/db_xref="CDD:48060"
misc_feature order(148797..148808,148821..148829,148833..148835,
148842..148844,148863..148865,149031..149033,
149040..149042,149046..149048)
/locus_tag="RCA_00625"
/note="Iron-sulfur protein interface; other site"
/db_xref="CDD:48060"
misc_feature order(148830..148832,148851..148856,148863..148865)
/locus_tag="RCA_00625"
/note="proximal quinone binding site [chemical binding];
other site"
/db_xref="CDD:48060"
misc_feature order(148863..148865,148896..148898,148905..148907,
148914..148919,148980..148982,149043..149045,
149127..149129)
/locus_tag="RCA_00625"
/note="SdhD (CybS) interface [polypeptide binding]; other
site"
/db_xref="CDD:48060"
misc_feature order(148863..148865,148881..148886,149010..149015)
/locus_tag="RCA_00625"
/note="proximal heme binding site [chemical binding];
other site"
/db_xref="CDD:48060"
gene 149505..149597
/locus_tag="RCA_00630"
/db_xref="GeneID:11860436"
CDS 149505..149597
/locus_tag="RCA_00630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299185.1"
/db_xref="GI:379022524"
/db_xref="GeneID:11860436"
/translation="MLLYDRGEFTLSEAKDLPWSEEIAKDYYEK"
gene 149976..150353
/locus_tag="RCA_00635"
/db_xref="GeneID:11860437"
CDS 149976..150353
/locus_tag="RCA_00635"
/note="COG2142 Succinate dehydrogenase, hydrophobic anchor
subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase hydrophobic membrane
anchor protein"
/protein_id="YP_005299186.1"
/db_xref="GI:379022525"
/db_xref="GeneID:11860437"
/translation="MVYDFKVEIVKAKASGSTKSGSHHWLLQRVTAIILALCSIWLIY
FTLTNKSSDLSIIMWELKKPFNVVALLITVIISLYHAMIGVQIVIEDYIRCNKLLNTL
IIVVKLFCLVTIAAFVTAMFYKG"
misc_feature 150042..150341
/locus_tag="RCA_00635"
/note="Succinate:quinone oxidoreductase (SQR) Type C
subfamily, Succinate dehydrogenase D (SdhD) subunit-like;
composed of predominantly uncharacterized bacterial
proteins with similarity to the E. coli SdhD subunit. One
characterized protein is the respiratory...; Region:
SQR_TypeC_SdhD_like; cd03495"
/db_xref="CDD:48056"
misc_feature order(150060..150062,150246..150251,150312..150314,
150321..150323)
/locus_tag="RCA_00635"
/note="putative SdhC subunit interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(150069..150071,150213..150215,150225..150227)
/locus_tag="RCA_00635"
/note="putative proximal heme binding site [chemical
binding]; other site"
/db_xref="CDD:48056"
misc_feature order(150234..150236,150243..150248,150255..150257)
/locus_tag="RCA_00635"
/note="putative Iron-sulfur protein interface [polypeptide
binding]; other site"
/db_xref="CDD:48056"
misc_feature 150249..150251
/locus_tag="RCA_00635"
/note="putative proximal quinone binding site; other site"
/db_xref="CDD:48056"
gene 150557..152347
/gene="sdhA"
/locus_tag="RCA_00640"
/db_xref="GeneID:11860438"
CDS 150557..152347
/gene="sdhA"
/locus_tag="RCA_00640"
/EC_number="1.3.99.1"
/note="COG1053 Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_005299187.1"
/db_xref="GI:379022526"
/db_xref="GeneID:11860438"
/translation="MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACVTKLF
PTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAADAVLE
LEHYGVPFSRTEEGKIYQRPFGGMTTEYGKGKAAYRTCAAADRTGHVILHTLYQQSLK
HKVQFFVEYFAIDLLMEDGQCRGVVAWNLDDGSMHCFRAHNVVLATGGYGRAYFSATS
AHTCTGDGGGMAIRAGLPLQDMEFVQFHPTGIYSAGCLITEGARGEGGYLVNANGERF
MERYAPATKDLASRDVVSRAMTIEIREGRGVGKYKDHVFLHLNHLSPEILYSRLPGIA
ETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGQVIIKEGENHNTIVKGLMAIGEA
ACVSVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASPHKSLKEETLEKVINRFDKV
RHSNGNILVADLRLKMQRTMQSHAAIFRTQEVLDEGVEMISEIRAGYKDIKVNDKSLI
WNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDLDWMKHTLSSIND
VGTVVLDYKPVTLTTLTDEVKAIPPAKRVY"
misc_feature 150557..152344
/gene="sdhA"
/locus_tag="RCA_00640"
/note="succinate dehydrogenase flavoprotein subunit;
Reviewed; Region: sdhA; PRK09078"
/db_xref="CDD:181641"
misc_feature 150650..151933
/gene="sdhA"
/locus_tag="RCA_00640"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 151943..152344
/gene="sdhA"
/locus_tag="RCA_00640"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene 152556..153212
/locus_tag="RCA_00645"
/db_xref="GeneID:11860439"
CDS 152556..153212
/locus_tag="RCA_00645"
/note="COG0765 ABC-type amino acid transport system,
permease component"
/codon_start=1
/transl_table=11
/product="succinate dehydrogenase flavoprotein subunit"
/protein_id="YP_005299188.1"
/db_xref="GI:379022527"
/db_xref="GeneID:11860439"
/translation="MFEYLIKFYPKILFIVEGTLVTLKYSVIAVIFGLVIGMLLAICK
VNKNCALRFFANFYTSIFRGTPLLIQLSIIYFASPYIVGIKFSVFTAGAISFSLNSGA
YVSEVIRAGINAVDKGQFEAAEALAIPRYLIMQDIILPQAVKNIFPSLVNELVSLIKE
SAIISMLGEIDLMRRAQIVSIETYNYFFPMLIAACCYYILVMLISFIAKIIEKKMIVN
"
misc_feature 152598..153197
/locus_tag="RCA_00645"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 152613..153173
/locus_tag="RCA_00645"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(152658..152663,152670..152675,152688..152690,
152718..152729,152733..152762,152769..152774,
152778..152780,152847..152852,152856..152858,
152862..152864,152871..152876,152880..152882,
152892..152897,152904..152906,152955..152957,
152997..153002,153009..153011,153030..153041,
153048..153053,153090..153095,153123..153128,
153135..153140,153144..153149,153156..153161,
153168..153173)
/locus_tag="RCA_00645"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(152736..152780,153030..153047)
/locus_tag="RCA_00645"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(152778..152780,152832..152834,153048..153050,
153084..153086,153093..153095,153123..153125)
/locus_tag="RCA_00645"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(152907..152945,152961..152966,152976..152978)
/locus_tag="RCA_00645"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 153370..153759
/gene="rpsL"
/locus_tag="RCA_00650"
/db_xref="GeneID:11860440"
CDS 153370..153759
/gene="rpsL"
/locus_tag="RCA_00650"
/note="COG0048 Ribosomal protein S12"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_005299189.1"
/db_xref="GI:379022528"
/db_xref="GeneID:11860440"
/translation="MPTYNQLVRFGRKSKTRKTKSPALESNPFKSGVCLVVKTVTPKK
PNSALRKIATVRLSNKRTVNAYIPGEKHSVKEHDRVLVRGGQVPDLPGVKYHIVLGAY
DIAGVKGRKQGRSRYGAPSKQVAVTKK"
misc_feature 153376..153699
/gene="rpsL"
/locus_tag="RCA_00650"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(153379..153384,153388..153393,153400..153405)
/gene="rpsL"
/locus_tag="RCA_00650"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 153379..153381
/gene="rpsL"
/locus_tag="RCA_00650"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(153403..153411,153445..153447,153451..153456,
153460..153462,153505..153510,153514..153522,
153541..153543,153565..153567,153574..153579,
153616..153621,153631..153636,153697..153699)
/gene="rpsL"
/locus_tag="RCA_00650"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(153496..153501,153631..153633)
/gene="rpsL"
/locus_tag="RCA_00650"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 153499..153504
/gene="rpsL"
/locus_tag="RCA_00650"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(153502..153519,153577..153603)
/gene="rpsL"
/locus_tag="RCA_00650"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 153786..154268
/locus_tag="RCA_00655"
/db_xref="GeneID:11860441"
CDS 153786..154268
/locus_tag="RCA_00655"
/note="COG0049 Ribosomal protein S7"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_005299190.1"
/db_xref="GI:379022529"
/db_xref="GeneID:11860441"
/translation="MSRRHAAGKRVILPDMKYNSILLSRFINNIMKEGKKALAEKIVY
SAFDKIEKKHRVDPYQIFNNAMHNVKPHLEVTSVRVGGANYQVPTHVDESRGYALASR
WIINAALKRSEKMMIDKLAEELFEASNNRGVAIKKKEDTHKMAEANKAFSHFSPKKMK
"
misc_feature 153786..154247
/locus_tag="RCA_00655"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 154281..156353
/locus_tag="RCA_00660"
/db_xref="GeneID:11860442"
CDS 154281..156353
/locus_tag="RCA_00660"
/note="COG0480 Translation elongation factors (GTPases)"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_005299191.1"
/db_xref="GI:379022530"
/db_xref="GeneID:11860442"
/translation="MTKINKLEYIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVH
EGGATMDWMEQEQERGITITSAATTCRWQDKIINIIDTPGHVDFTIEVERSLRVLDGA
VAVFDGVAGVEPQSETVWRQADKYNVPRMCFVNKMDRMGADFYRCVEMIKDRLGAKPL
VIQLPVGIEENFKGIIDLVKMKAVIWKDESLGAEYFEEDIPADMKYKAEEYRTKLLDM
VVELDDHIMEKYLSGEEVTEEEIERLIRTGTISAAFYPVLCGSAFKNKGVQPLLDAVV
GFLPSPIDIGIVKGIEVSTGEEKDFPISVTEPFAALAFKIMNDPFVGSLTFIRIYSGK
ITSGSTVINTVKNKREKIGRMLLMHANNREDVKEASAGDIVALAGLKDTTTGDTLSDI
DKQVILERMEFPEPVIELAVEPKSTADQEKMGLALSRLAAEDPSFRVSMDHETGQTVI
KGMGELHLEIIIDRMRREFKVEANIGAPQVAYRETITKVCEIDYTHKKQSGGAGQFAR
VKIIFEPLNPGEGFVFESKIVGGAVPKEYIPGIEKGLNNIRETGVIAGYPMIDFKATL
VDGAFHDVDSSVLAFEIAAKAAFREGMLKGNPKLLEPIMKVEVITPDEYMGDIIGDLN
SRRGQIQSMDPRANAQVVTSNVPLAEMFGYVNTLRSLSQGRAQFSMIFSHYDQVPSQI
ADVIKAKK"
misc_feature 154281..156350
/locus_tag="RCA_00660"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 154314..155126
/locus_tag="RCA_00660"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 154329..154352
/locus_tag="RCA_00660"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(154332..154334,154338..154340,154350..154355,
154362..154364,154371..154376,154476..154481,
154533..154538,154605..154610,154716..154718,
154728..154730)
/locus_tag="RCA_00660"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(154338..154340,154344..154355,154683..154688,
154692..154694,155061..155069)
/locus_tag="RCA_00660"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 154419..154478
/locus_tag="RCA_00660"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 154464..154466
/locus_tag="RCA_00660"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 154521..154532
/locus_tag="RCA_00660"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 154527..154583
/locus_tag="RCA_00660"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 154683..154694
/locus_tag="RCA_00660"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 155061..155069
/locus_tag="RCA_00660"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 155205..155453
/locus_tag="RCA_00660"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 155724..156071
/locus_tag="RCA_00660"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 156084..156317
/locus_tag="RCA_00660"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 156514..156589
/locus_tag="RCA_t05295"
/db_xref="GeneID:11860443"
tRNA 156514..156589
/locus_tag="RCA_t05295"
/product="tRNA-Trp"
/db_xref="GeneID:11860443"
gene 156782..156982
/gene="secE"
/locus_tag="RCA_00665"
/db_xref="GeneID:11860444"
CDS 156782..156982
/gene="secE"
/locus_tag="RCA_00665"
/note="COG0690 Preprotein translocase subunit SecE"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecE"
/protein_id="YP_005299192.1"
/db_xref="GI:379022531"
/db_xref="GeneID:11860444"
/translation="MFKEYKIYKFFEQVKQETYKVVWPTRKELVASTLVVVVAVFIFS
LICLVLDYSIHNIMKLLLNIGK"
misc_feature 156782..156964
/gene="secE"
/locus_tag="RCA_00665"
/note="preprotein translocase subunit SecE; Reviewed;
Region: secE; PRK07597"
/db_xref="CDD:181055"
gene 156998..157576
/gene="nusG"
/locus_tag="RCA_00670"
/db_xref="GeneID:11860445"
CDS 156998..157576
/gene="nusG"
/locus_tag="RCA_00670"
/note="COG0250 Transcription antiterminator"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusG"
/protein_id="YP_005299193.1"
/db_xref="GI:379022532"
/db_xref="GeneID:11860445"
/translation="MTAQSIDNILPSSKKNIKQWYVVHTASGAEKRIKEDMLRKIAKQ
KMTDFFEDILIPVFGVSEVKRGKNVKVEKKLMPSYLLIKMNMTDKSWHFVKNIPGVTG
FLGSKTMPKALTEGEIQNIFNNLEAEAKEAKNSKLYEVGEIVTVTDGPFETFMGTVEE
IDQEKNRLKVSVSIFGKATPIELNFSQVKKND"
misc_feature 157034..157573
/gene="nusG"
/locus_tag="RCA_00670"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 157052..157366
/gene="nusG"
/locus_tag="RCA_00670"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(157061..157063,157163..157165,157223..157225,
157232..157234,157238..157240,157334..157336,
157358..157360)
/gene="nusG"
/locus_tag="RCA_00670"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 157412..157489
/gene="nusG"
/locus_tag="RCA_00670"
/note="KOW motif; Region: KOW; cl00354"
/db_xref="CDD:199293"
gene 157810..158247
/gene="rplK"
/locus_tag="RCA_00675"
/db_xref="GeneID:11860446"
CDS 157810..158247
/gene="rplK"
/locus_tag="RCA_00675"
/note="COG0080 Ribosomal protein L11"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_005299194.1"
/db_xref="GI:379022533"
/db_xref="GeneID:11860446"
/translation="MSQKAIKGYINLIIPAAGATPAPPIGPALGQRKVNIAAFCKDFN
DATQAMEKGIPLPTVITVYEDRSFSFKIKTSPASYFLKKYAKITKGSSATKKEAIVGK
VTMDDCREIAKLKMPDLNTKNIEAATKIICGSAASMGLEVVGN"
misc_feature 157819..158241
/gene="rplK"
/locus_tag="RCA_00675"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 157900..158235
/gene="rplK"
/locus_tag="RCA_00675"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(157900..157902,158035..158043,158053..158055,
158074..158076,158152..158154,158167..158175,
158185..158187,158194..158199,158206..158211,
158215..158223)
/gene="rplK"
/locus_tag="RCA_00675"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature 157900..157902
/gene="rplK"
/locus_tag="RCA_00675"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(157984..157986,157990..158001,158011..158013,
158017..158022,158155..158160,158167..158172)
/gene="rplK"
/locus_tag="RCA_00675"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(158092..158094,158104..158106)
/gene="rplK"
/locus_tag="RCA_00675"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 158253..158972
/gene="rplA"
/locus_tag="RCA_00680"
/db_xref="GeneID:11860447"
CDS 158253..158972
/gene="rplA"
/locus_tag="RCA_00680"
/note="COG0081 Ribosomal protein L1"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_005299195.1"
/db_xref="GI:379022534"
/db_xref="GeneID:11860447"
/translation="MSNKKDIAVKNSGGKKIREAREKVKSDTLYNLTNAVERLKSASY
VKFDPTLEIVMKLGIDPRHSDQMVRGVVNLPAGTGKTVRVAVICKAERVEEAKSAGAD
LVGSTSIIDEIKAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKN
AIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLQNLNEFIEAVIKAKPAGLKGSYL
KAMYLSSTMGASVQIDLTSIA"
misc_feature 158346..158951
/gene="rplA"
/locus_tag="RCA_00680"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(158385..158393,158400..158402,158406..158408,
158412..158414,158418..158420,158781..158783,
158787..158789,158793..158795,158931..158936,
158940..158942)
/gene="rplA"
/locus_tag="RCA_00680"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 159257..159766
/gene="rplJ"
/locus_tag="RCA_00685"
/db_xref="GeneID:11860448"
CDS 159257..159766
/gene="rplJ"
/locus_tag="RCA_00685"
/note="COG0244 Ribosomal protein L10"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_005299196.1"
/db_xref="GI:379022535"
/db_xref="GeneID:11860448"
/translation="MLRSEKSVAVEDIVNIYKESSSVIITHYHGLTVSQVSSLRESLK
SQEAGFKVVKNTLAKIAANQTGLNNIVELFAGPTAIAYSKEPVGMAKLVVNFAKANDN
LKIIGGVVDNHVLDKHSIKELSKLPLLNELRGKIVELLQAPATKVLGVLQAPSSSMAR
VIQAHASKN"
misc_feature 159260..159727
/gene="rplJ"
/locus_tag="RCA_00685"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(159272..159277,159284..159286,159416..159427,
159434..159436)
/gene="rplJ"
/locus_tag="RCA_00685"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(159515..159517,159584..159586,159593..159595,
159641..159643,159650..159655,159662..159667,
159671..159688,159692..159700,159707..159712,
159716..159721,159725..159727)
/gene="rplJ"
/locus_tag="RCA_00685"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 159798..160175
/gene="rplL"
/locus_tag="RCA_00690"
/db_xref="GeneID:11860449"
CDS 159798..160175
/gene="rplL"
/locus_tag="RCA_00690"
/note="COG0222 Ribosomal protein L7/L12"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_005299197.1"
/db_xref="GI:379022536"
/db_xref="GeneID:11860449"
/translation="MADLAKIEEQLSSLTLMQAAELVKMLEEKWGVSAAAPVPMAAAS
APAASEEAIAEKTDFEVVLTAAGAKKVEVIKVVREITGLGLIEAKKLVDEAPKAVKQS
VKKAEAEEIKSKLEAAGAKVELK"
misc_feature 159801..160169
/gene="rplL"
/locus_tag="RCA_00690"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(159801..159803,159840..159848,159855..159860,
159867..159869,159876..159878,159921..159923,
159930..159935,159939..159947,159966..159971,
160035..160037,160038..160043,160047..160049,
160053..160058,160098..160103,160107..160109,
160116..160118)
/gene="rplL"
/locus_tag="RCA_00690"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(159810..159812,159819..159821,159831..159833,
159870..159872,159885..159887)
/gene="rplL"
/locus_tag="RCA_00690"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(159852..159854,159861..159866,159876..159878,
159885..159887)
/gene="rplL"
/locus_tag="RCA_00690"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(160008..160013,160020..160025,160032..160034,
160050..160055,160062..160064)
/gene="rplL"
/locus_tag="RCA_00690"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(160011..160013,160023..160025,160032..160034,
160050..160055,160062..160064)
/gene="rplL"
/locus_tag="RCA_00690"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(160011..160013,160020..160025,160032..160034)
/gene="rplL"
/locus_tag="RCA_00690"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 160877..164998
/gene="rpoB"
/locus_tag="RCA_00695"
/db_xref="GeneID:11860450"
CDS 160877..164998
/gene="rpoB"
/locus_tag="RCA_00695"
/EC_number="2.7.7.6"
/note="COG0085 DNA-directed RNA polymerase, beta
subunit/140 kD subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_005299198.1"
/db_xref="GI:379022537"
/db_xref="GeneID:11860450"
/translation="MVLLRDNIEVQPLSNNRRIRKNFGHINLVADIPNLIEIQKNSYE
KNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRS
LSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVV
VSQMHRSPGVFFYHDEGKIHSSGKLLYSARVIPYRGSWLDLEFDAKDIIYFRIDRKRK
LYATTLLRAIGMSTEEIIKFYYNSVTYKLVQNKGWAVKFMPGHITAHRLTSDLVDADT
GNVLLKAGQKITPRLAQKYFREGLNNVLVARETLIGKYLSEDLRDPVSDEILAKIGEM
ITADMLNVINDLKIKNVNVLVVNPQSGPYIRNTLFADKNQDRETALCDIFRVLRPGEP
ANIEAAEGLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRVLV
ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTLMPHD
LVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRD
VHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDGRVTDEVVYLS
AIEEGKYKIGQANSKVDKDGVLQGEFINCRVEGGNFVMVEPHEVDFIDVTPMQVVSVA
ASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDG
IVEQVDSNRIVIRTLTQKADGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKND
IIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDIFTSIHIEEFEVI
ARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPKSESPITP
EEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQRAIAIEKQQIEK
LAKDRDDELEIVEHFVFSWLEKLLIGQVIINGPKQVKAGQTITTEMLKGLSKGQFWQL
TVEDANIMNEIEQIKTHYDEKKEALNKRFATKVEKLQSGDDLPQGALKVVKVFIATKH
KLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETH
LGWASINLAKKISTLVQEYQNKKIAIEQIKKFLIKLYGENINSVLERSEEEIISFCKK
VSKGVHFATPVFDGAKVQDVKDMLKLADQDPSGQVKLIDGRTGEYFDRLVTVGQKYLL
KLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS"
misc_feature 160979..>161584
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature <161993..162289
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <162191..>163063
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature 163073..>163750
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RNA polymerase Rpb2, domain 6; Region:
RNA_pol_Rpb2_6; pfam00562"
/db_xref="CDD:201307"
misc_feature <164078..164983
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(164129..164131,164135..164137,164210..164218,
164225..164227,164231..164236,164606..164629,
164633..164635)
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(164183..164185,164189..164191,164195..164197,
164261..164263,164267..164269,164276..164278,
164285..164287,164300..164302,164312..164314,
164522..164524,164603..164605,164627..164635,
164639..164641,164678..164680,164687..164695,
164699..164704,164765..164773,164783..164785,
164789..164794,164798..164800,164804..164821,
164825..164842,164852..164854,164921..164923,
164933..164935,164939..164941,164945..164950,
164954..164956,164960..164971,164975..164977,
164981..164983)
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(164207..164209,164609..164611)
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(164210..164212,164249..164251,164489..164494,
164498..164500,164591..164593,164642..164644)
/gene="rpoB"
/locus_tag="RCA_00695"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 165192..169325
/locus_tag="RCA_00700"
/db_xref="GeneID:11860451"
CDS 165192..169325
/locus_tag="RCA_00700"
/EC_number="2.7.7.6"
/note="COG0086 DNA-directed RNA polymerase, beta'
subunit/160 kD subunit"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_005299199.1"
/db_xref="GI:379022538"
/db_xref="GeneID:11860451"
/translation="MSLVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETIN
YRTFKPEKDGLFCARIFGPVKDYECLCGKYKRMKNRGIICEKCGVEVTVSRVRRERMG
HIELAAPIAHIWFLKSLPSRISTLLDMTMRDLEKILYFENYVVVDPGLSILQKGELLT
EEELQKAKDKYGEDAFTASIGAEVIQQMLKDLDFAKLKQELYEELQNTTSEVKKKKLV
KRLKLVEDFLESENKPEWMIIDVLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRN
NRLKKLIESKAPDIIVRNEKRMLQEAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGK
QGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSKLELYGIAT
TIKAAKRMVEAEKPEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLH
PLVCAAFNADFDGDQMAVHIPLSIEAQLEARVFMMSTNNILSPANGRPIIVPDKDIVL
GLYYLTIAFDNEVGEGLMFSDLAEMEHALYNKFITIHTKIKYRRNQLNAEGKMVPVII
DTTYGRLMVGELLPSNPNIEFKFINKQLTKKDISLVIDLVYRHCGQKATVIFADQLMK
LGFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLITYGEKYNKVVD
AWSRCTDRVANDMMKEIATPPINDEPNHQKINAIYMMAVSGARGSFQQIKQLGGMRGL
MTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDTALKTASSGYLTRKLVDVA
QDCIITEKDCGTNKGIEVKSVIEGGEVIVSLAEKILGRTAAIDIFHPVTNDLILNKGE
LINEVKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATGTLVSEGEAIGVIAA
QSIGEPGTQLTMRTFHIGGAATKGAEISSVEASYDAKVKIISRNVVINSEERKIVMSR
NCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIPIITEKSGKVL
FKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEVITLSNGLE
ARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHA
VIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLID
GNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG
GTTLLVGEKIDRHEFDEINEKAIKNGLKPAKAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENIIADKG"
misc_feature 165237..166217
/locus_tag="RCA_00700"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 165246..167732
/locus_tag="RCA_00700"
/note="DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription]; Region: RpoC; COG0086"
/db_xref="CDD:30435"
misc_feature 165894..166724
/locus_tag="RCA_00700"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 166656..167117
/locus_tag="RCA_00700"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 167202..167465
/locus_tag="RCA_00700"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 167895..>167999
/locus_tag="RCA_00700"
/note="Largest subunit of RNA polymerase (RNAP),
C-terminal domain; Region: RNAP_largest_subunit_C;
cl11429"
/db_xref="CDD:142634"
misc_feature 167910..167912
/locus_tag="RCA_00700"
/note="Rpb1 - Rpb6 interaction site [polypeptide binding];
other site"
/db_xref="CDD:132719"
misc_feature <168606..168800
/locus_tag="RCA_00700"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cl00162"
/db_xref="CDD:185805"
misc_feature <168807..169256
/locus_tag="RCA_00700"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(169098..169100,169143..169148)
/locus_tag="RCA_00700"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(169188..169190,169206..169208,169224..169226,
169233..169238,169248..169250)
/locus_tag="RCA_00700"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene complement(169539..170453)
/locus_tag="RCA_00705"
/db_xref="GeneID:11860452"
CDS complement(169539..170453)
/locus_tag="RCA_00705"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_005299200.1"
/db_xref="GI:379022539"
/db_xref="GeneID:11860452"
/translation="MDEIYSLTPHPIRYACLNYLKLLSLPISLAFYLIKFCFTANPVW
TWIGVNILYKKMDQSIATKILHGLPDGIETEQDILKTVEYVFKKYEENPTLAPLIEPT
FIQKFLAKAGKYIPAFSKIIKFWNEGGINYSYEIQTKRELINVIYKQIVSKAYEVGKK
GEKLEITDVQAIFPKINFKEKVKAESEDLQIDKVEVSNRPLSNNQKYEEVNTNNPLMN
LIMLKALYDRVGQEIQKVYIENYLAEYQIRIRHHYTMLKNAYIDDDLTKLQLYANYNY
DNNTYIAEQPISYLGQNYEHLTTSISCY"
misc_feature complement(170028..>170408)
/locus_tag="RCA_00705"
/note="Mitovirus RNA-dependent RNA polymerase; Region:
Mitovir_RNA_pol; pfam05919"
/db_xref="CDD:218812"
gene 170836..172338
/locus_tag="RCA_00710"
/db_xref="GeneID:11860453"
CDS 170836..172338
/locus_tag="RCA_00710"
/EC_number="3.4.11.1"
/note="COG0260 Leucyl aminopeptidase"
/codon_start=1
/transl_table=11
/product="multifunctional aminopeptidase A"
/protein_id="YP_005299201.1"
/db_xref="GI:379022540"
/db_xref="GeneID:11860453"
/translation="MLNVNFTNGELLNTQGLVVFIDEQLKLDSNLITLDQQHHGLISK
TIADKLQFTGKYGQIKVIPSVIKSGEIKYLIIAGLGTEEKLTEAKVEELGGKILQYAT
SAKISTISLKIINRISRFTSQTFASLVASGAFLASYRFDKYRTNLKEAEKFAVESIEV
FTDNNTEAAKLFEVKKLVAEAVFFTRDISNEPSNIKTPQVYAERIVDILEPLGVDVDV
IGEREMKNLGMGALLGVGQGSQNESKLVVMEYKGGSKYPTIALVGKGVIFDTGGISLK
PSSNMHLMRYDMGGSAAVVGSMIAVAGQKLPVNIVGVVGLVENMLSGNAQRPGDVVTT
MSGQTVEVLNTDAEGRLVLADAVWYAQEKFKPKCLIDVATLTGAITVALGSTYAGCFS
NNDELASKLIKAGEEVNEKLWRMPLHDEYDAMIGSDIADMANISNVPRAAGSCIAAHF
IKRFIKDGVDWAHLDIAGVANSNKVSSLGPKGAVGYGVRLLEKFIKEYNR"
misc_feature 170836..172329
/locus_tag="RCA_00710"
/note="multifunctional aminopeptidase A; Provisional;
Region: PRK00913"
/db_xref="CDD:179165"
misc_feature 170875..172320
/locus_tag="RCA_00710"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature order(170977..170982,171022..171024,171052..171054,
171097..171099,171403..171405,171409..171417,
171547..171549,171553..171555,171637..171639,
171655..171657,171670..171672,171679..171681,
171688..171693,171787..171789,171793..171804,
171808..171810,171814..171828,171844..171846,
171850..171852,171862..171864,171973..171987,
171994..171996,172072..172077,172081..172083,
172096..172098,172102..172107,172120..172122,
172126..172128,172159..172164,172168..172170,
172276..172278)
/locus_tag="RCA_00710"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(171625..171627,171640..171642,171661..171663,
171694..171696,171871..171873,171877..171879,
171883..171885,171958..171960)
/locus_tag="RCA_00710"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(171625..171627,171640..171642,171694..171696,
171871..171873,171877..171879)
/locus_tag="RCA_00710"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 172532..173326
/locus_tag="RCA_00715"
/db_xref="GeneID:11860454"
CDS 172532..173326
/locus_tag="RCA_00715"
/note="COG1192 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299202.1"
/db_xref="GI:379022541"
/db_xref="GeneID:11860454"
/translation="MNSKPYIFVIGNEKGGAGKTTCSMHLIIALLYQNYSVVSIDTDS
RQSSLTNYLKNRDLYNKQNPDKTVLVPKHFYISESEVGEQTKSFEQVLKNNQDTDYIV
IDTPGSHTPLSRLAHSYADMIITPINDSFLDLDVIAKIDSKDEIISPSIYSQMIWEQK
MERASRDRVSIDWIILRNRLSNLDALNKRRVGNVLAKLAKRINFKLAEGFSERVIYRE
LFLQGLTLLDLKTAKYDRAFNSSHVLARQELRNFLDFLGIKTMFKG"
misc_feature 172547..173305
/locus_tag="RCA_00715"
/note="ATPase MipZ; Region: MipZ; pfam09140"
/db_xref="CDD:204149"
misc_feature 172550..172969
/locus_tag="RCA_00715"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 172571..172591
/locus_tag="RCA_00715"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature order(172589..172591,172841..172843)
/locus_tag="RCA_00715"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 173407..173838
/locus_tag="RCA_00720"
/db_xref="GeneID:11860455"
CDS 173407..173838
/locus_tag="RCA_00720"
/codon_start=1
/transl_table=11
/product="leucyl aminopeptidase"
/protein_id="YP_005299203.1"
/db_xref="GI:379022542"
/db_xref="GeneID:11860455"
/translation="MQNISEKISPEQRKQADELINKYKHLTLAEQKEVDRKLELHFRE
KDLERNELQLRMNKIFGNLSRENQEKLQVNNNPINKIKEELLPLIKGIINLVENVAEI
IKNPKKVIYEWIKGELNQVKPQQQNHIQSLPKQKNVPTLSR"
gene 173914..175722
/gene="aspS"
/locus_tag="RCA_00725"
/db_xref="GeneID:11860456"
CDS 173914..175722
/gene="aspS"
/locus_tag="RCA_00725"
/EC_number="6.1.1.12"
/note="COG0173 Aspartyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_005299204.1"
/db_xref="GI:379022543"
/db_xref="GeneID:11860456"
/translation="MHKYRTHNCNALQISDVGKEVKLSGWVHRRRDHGNLVFIDLRDH
YGITQIVFTDQNLQLMEMAGRLRYESVITVIGKVVARSGDTINDTLTTGHIEILAREF
IVESAADTLPFVINTEKDAPEDLRLKHRFLDLRREKLHNNIILRSQIISHIRHLMTAR
GFTEFQTPILTASSPEGARDFLVPSRMHSGKFYALPQAPQQFKQLLMVSGFDRYFQIA
PCFRDEDARADRSPGEFYQLDVEMSFVTQEDVFSTIEPVIYDLFTKFTDKKVSETPFI
RIPYNESMLKYGSDKPDLRNPIIIADVTEIFRDSDFTIFRENIKKGSVVRAIPAPKAA
AHARSFFDKMIEFAISEGAGGLGYIQFSKSDKAKGPVAKFLSQQQLESLKATVNISDG
DAVFFVSDKKEKAAKLAGKVRVRISDELDLLEKDCFKFCWITDFPFYELNEETAKIDF
SHNPFSMPQGGLDALKNAKTTAELLELTAYQYDIVCNGIELSSGAIRNHKPEIMYKAF
SIAGYSEEEVDKRFGSMIRAFKFGAPPHGGIAPGIDRIVMLLAEATNIREIIAFPLNQ
QAEDLLMNAPNYVEDKALKELGIMLLPSARKNVEQE"
misc_feature 173917..175692
/gene="aspS"
/locus_tag="RCA_00725"
/note="aspartyl-tRNA synthetase; Validated; Region: aspS;
PRK00476"
/db_xref="CDD:179042"
misc_feature 173926..174330
/gene="aspS"
/locus_tag="RCA_00725"
/note="EcAspRS_like_N: N-terminal, anticodon recognition
domain of the type found in Escherichia coli aspartyl-tRNA
synthetase (AspRS), the human mitochondrial (mt) AspRS-2,
the discriminating (D) Thermus thermophilus AspRS-1, and
the nondiscriminating (ND)...; Region: EcAspRS_like_N;
cd04317"
/db_xref="CDD:58587"
misc_feature order(173926..173928,173935..173937,173989..173991,
174043..174045,174229..174231,174235..174240)
/gene="aspS"
/locus_tag="RCA_00725"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58587"
misc_feature order(173998..174000,174004..174012,174025..174027,
174058..174060,174112..174114,174154..174156,
174172..174174,174199..174201,174247..174249)
/gene="aspS"
/locus_tag="RCA_00725"
/note="anticodon binding site; other site"
/db_xref="CDD:58587"
misc_feature 174340..>174777
/gene="aspS"
/locus_tag="RCA_00725"
/note="Asp tRNA synthetase (aspRS) class II core domain.
Class II assignment is based upon its structure and the
presence of three characteristic sequence motifs. AspRS is
a homodimer, which attaches a specific amino acid to the
3' OH group of ribose of the...; Region: AspRS_core;
cd00777"
/db_xref="CDD:73228"
misc_feature order(174349..174357,174364..174366,174373..174378,
174385..174387,174394..174405,174409..174429,
174448..174450,174457..174471,174481..174492,
174535..174540,174547..174552,174568..174570,
174580..174582,174613..174615,174643..174645,
174658..174660)
/gene="aspS"
/locus_tag="RCA_00725"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73228"
misc_feature 174415..174429
/gene="aspS"
/locus_tag="RCA_00725"
/note="motif 1; other site"
/db_xref="CDD:73228"
misc_feature order(174439..174447,174505..174507,174511..174513,
174520..174522,174577..174579,174583..174585,
174598..174606,174616..174618,174622..174624)
/gene="aspS"
/locus_tag="RCA_00725"
/note="active site"
/db_xref="CDD:73228"
misc_feature 174574..174585
/gene="aspS"
/locus_tag="RCA_00725"
/note="motif 2; other site"
/db_xref="CDD:73228"
misc_feature 174856..175137
/gene="aspS"
/locus_tag="RCA_00725"
/note="GAD domain; Region: GAD; pfam02938"
/db_xref="CDD:145868"
misc_feature <175174..175614
/gene="aspS"
/locus_tag="RCA_00725"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature order(175381..175386,175396..175398,175525..175530,
175534..175539,175546..175548)
/gene="aspS"
/locus_tag="RCA_00725"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(175537..175539,175546..175548)
/gene="aspS"
/locus_tag="RCA_00725"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene complement(175926..176114)
/locus_tag="RCA_00730"
/db_xref="GeneID:11860457"
CDS complement(175926..176114)
/locus_tag="RCA_00730"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299205.1"
/db_xref="GI:379022544"
/db_xref="GeneID:11860457"
/translation="MITSSSGLYNNSLFEFSDDFTLSNSNTAKSLIMRVDANNFLKLF
WRVPKKNRFVYSLNALMP"
gene complement(176164..176874)
/locus_tag="RCA_00735"
/db_xref="GeneID:11860458"
CDS complement(176164..176874)
/locus_tag="RCA_00735"
/note="COG0670 Integral membrane protein, interacts with
FtsH"
/codon_start=1
/transl_table=11
/product="aspartyl-tRNA synthetase"
/protein_id="YP_005299206.1"
/db_xref="GI:379022545"
/db_xref="GeneID:11860458"
/translation="MIDYTKTLTATAKNKTFDEGLRKYMLKVYNYMALALLLTGVAAL
TTISVEPIYNLMFQTSFGTIIMFAPLGIALYFFMGFGRMNLQTAQILFWVYATLTGMS
LAYLALIYTGTSIARTFFICSSVFGAMSLYGYSTSRDLTSMGSFFAMGLIGLIIASLV
NLFLKSSALSFATSLIGIVVFMGLIAWDTQKIKSMYYMAGNNEVGQKLSIMAAFTLYL
DFINLFLHLVRFLGNRRD"
misc_feature complement(176179..176817)
/locus_tag="RCA_00735"
/note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins;
Region: BI-1-like_bacterial; cd10432"
/db_xref="CDD:198414"
gene complement(176940..177662)
/locus_tag="RCA_00740"
/db_xref="GeneID:11860459"
CDS complement(176940..177662)
/locus_tag="RCA_00740"
/EC_number="1.3.1.26"
/note="COG0289 Dihydrodipicolinate reductase"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_005299207.1"
/db_xref="GI:379022546"
/db_xref="GeneID:11860459"
/translation="MINIGLSGSTGKMGRAIAERIDEFENCKISAKFSSTNSLYDLDN
FCKHSDVFIDFSTPEILEKLVNYALKHNTKLVIGTTGLQPKHFKLLEKAAQTLPILYS
ANMSIGANLLSYLAKEAIKILDDYDVEILDIHHRNKKDSPSGTAIMLAETIANGKDLD
ITFNRGNRPRKKEEIGISSLRGGNVHSIHEISFLDDNEIITLKHEALNNNSFANGAIK
AAIWLQDKPSALYSMQDIYKIY"
misc_feature complement(176946..177662)
/locus_tag="RCA_00740"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(177348..177659)
/locus_tag="RCA_00740"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(176955..177341)
/locus_tag="RCA_00740"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(177670..178152)
/locus_tag="RCA_00745"
/db_xref="GeneID:11860460"
CDS complement(177670..178152)
/locus_tag="RCA_00745"
/note="COG1853 Conserved protein/domain typically
associated with flavoprotein oxygenases, DIM6/NTAB family"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299208.1"
/db_xref="GI:379022547"
/db_xref="GeneID:11860460"
/translation="MAGTVTESQFKDAMSRFPQGVTIITTNYNNELFGFTASSFTSVS
LRPSLILFCLNKNSSSINSFQKSNNFAVSILAENQIDISKHFAKSQLNKFTKIDYTLG
NKTDCPLINGATCHIECNKYAAHDAGDHAIFIGKVINTTIKNNLKPLLYFHKSYTNLQ
"
misc_feature complement(177685..178113)
/locus_tag="RCA_00745"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene complement(178137..178862)
/locus_tag="RCA_00750"
/db_xref="GeneID:11860461"
CDS complement(178137..178862)
/locus_tag="RCA_00750"
/note="COG0834 ABC-type amino acid transport/signal
transduction systems, periplasmic component/domain"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_005299209.1"
/db_xref="GI:379022548"
/db_xref="GeneID:11860461"
/translation="MKFLKIFLLSFLLVSCEKKETEKTLIVGTAADNPPYEFIQDGKI
VGIDIDIIKAIGERLNKKVIIKNFDFNGLLAALVSENIDVAVAELSVTPERAEYISFS
DNYATARFAIIYRTGDNIQSSKELENKIVGVQLGSVLEKKAQDLSQTMNIKVHSLANH
LMLVEELKARVIDAIISEEFQGIKLKENNPNLESCTLEEFSSDFAIGMSKNSGLINEI
NEAIYSLKKDGTINKIMKKWLGQ"
misc_feature complement(178140..178790)
/locus_tag="RCA_00750"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(178146..178790)
/locus_tag="RCA_00750"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(178329..178331,178449..178451,
178578..178580,178653..178655,178764..178766))
/locus_tag="RCA_00750"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(178350..178352,178368..178370,
178380..178382))
/locus_tag="RCA_00750"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(178242..178259)
/locus_tag="RCA_00750"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(178859..178942)
/locus_tag="RCA_00755"
/db_xref="GeneID:11860462"
CDS complement(178859..178942)
/locus_tag="RCA_00755"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299210.1"
/db_xref="GI:379022549"
/db_xref="GeneID:11860462"
/translation="MFSIPNVIPQFDHGMTQDMLKLKTLFL"
gene complement(178942..180393)
/gene="gatB"
/locus_tag="RCA_00760"
/db_xref="GeneID:11860463"
CDS complement(178942..180393)
/gene="gatB"
/locus_tag="RCA_00760"
/EC_number="6.3.5.-"
/note="COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B
subunit (PET112 homolog)"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_005299211.1"
/db_xref="GI:379022550"
/db_xref="GeneID:11860463"
/translation="MTYIKGNTGKWEYVIGLEIHAQISSKSKLFSGSSTTFAAMPNSQ
VSYVDAAMPGMLPVLNKHCVHQAIKTGLALKAQINKYSVFDRKNYFYADLPQGYQISQ
FYYPIVQNGTMEILTSTGNLKTIRINRLHLEQDAGKSIHDQSPHYSFIDLNRAGIGLM
EIVTEPDISSPEEAAEFVKKLRSLLRYIGSCDGDMEKGSMRCDANISVRRSGEPLGIR
CEIKNINSIRNIIKAIEFEAKRQVDLIESGGIVIQETRLFNADSGETRTIRLKEEAID
YRYFPDPDLLPLIISDELINKLKANLPELPDQKIEKYMKEFGLSKYDAEVIVADESVA
EYFEQAANDCNPKMLTNWLTSELFGQLNKASIGISKCKITPSNFAKLIKLIENDTISG
KIAKTVFEIMFETGKAPDKIVEEKGLVQVSDNNVLNTVIDEVITENPKSVEDYRSGKE
KLFSFFVGQIMKKTGGKANPILVNQLLKEKLGS"
misc_feature complement(178951..180375)
/gene="gatB"
/locus_tag="RCA_00760"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature complement(179500..180360)
/gene="gatB"
/locus_tag="RCA_00760"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature complement(178951..179388)
/gene="gatB"
/locus_tag="RCA_00760"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene complement(180396..181877)
/gene="gatA"
/locus_tag="RCA_00765"
/db_xref="GeneID:11860464"
CDS complement(180396..181877)
/gene="gatA"
/locus_tag="RCA_00765"
/EC_number="6.3.5.-"
/note="COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A
subunit and related amidases"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
A"
/protein_id="YP_005299212.1"
/db_xref="GI:379022551"
/db_xref="GeneID:11860464"
/translation="MTELNKLTVADSIKGLKNKDFTSTELVNAHIQQIEKHKNLNAYV
TKTFDLALKGAQIADQNYAQNKARTLEGIPFAAKDLFCTKGIRTTACSNILKNFIPNY
ESSVTQNIFNNGGVMLGKTNMDEFAMGAANITSCFGNVINPWKANNDNSDLVPGGSSG
GSAASVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAG
IFTRSVLDSAIMLEAMMGFDEKDSTSLKAEVPQLQSAIGSSVKNMKIGVPLSLGEGGL
IEPDVMKMWQDTIELLKNAGTEIVDITLPYAKYGVAVYYVIAPAEASSNLSRYDGVRY
GLRVERENMTLDEMYEMTRSAGFGEEVKRRIMIGTYVLSSSCMDAYYLKAQKVRSLVA
NDFNNAFTKVDTILLPAAPSEAFKIGEKQNDPTIMYLNDLFTIPASLAGLPCVSVPAG
LSARGLPLGMQIIGKQLDEYNVLKVASTIESGVKHIKFEPKGF"
misc_feature complement(180408..181877)
/gene="gatA"
/locus_tag="RCA_00765"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature complement(180438..181832)
/gene="gatA"
/locus_tag="RCA_00765"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene complement(181880..182182)
/gene="gatC"
/locus_tag="RCA_00770"
/db_xref="GeneID:11860465"
CDS complement(181880..182182)
/gene="gatC"
/locus_tag="RCA_00770"
/EC_number="6.3.5.-"
/note="COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C
subunit"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
C"
/protein_id="YP_005299213.1"
/db_xref="GI:379022552"
/db_xref="GeneID:11860465"
/translation="MITKEEAQKIAKLARLKFEEDTVEKFSTQLSSIMNMIDILNEID
CKDIEPLTSVSNMNARMREDEVTSSDLSDKLLDHVSGQSAQLAKEVKYFITPKVIE"
misc_feature complement(181883..182182)
/gene="gatC"
/locus_tag="RCA_00770"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit C;
Reviewed; Region: gatC; PRK00034"
/db_xref="CDD:178810"
gene complement(182352..182912)
/gene="frr"
/locus_tag="RCA_00775"
/db_xref="GeneID:11860466"
CDS complement(182352..182912)
/gene="frr"
/locus_tag="RCA_00775"
/note="COG0233 Ribosome recycling factor"
/codon_start=1
/transl_table=11
/product="ribosome recycling factor"
/protein_id="YP_005299214.1"
/db_xref="GI:379022553"
/db_xref="GeneID:11860466"
/translation="MDTETLKKNLQEKMEKALKVLDHELKGLRTGRASVNLLDSVIVE
AYGSKIPLSQVASISTPDARTINVQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLP
IPILTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQ
VQKLTNDYSNKVDSAIKQKEQEIMTV"
misc_feature complement(182355..182909)
/gene="frr"
/locus_tag="RCA_00775"
/note="ribosome recycling factor; Reviewed; Region: frr;
PRK00083"
/db_xref="CDD:178850"
misc_feature complement(182361..182897)
/gene="frr"
/locus_tag="RCA_00775"
/note="Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are 'recycled'
and ready for another round of...; Region: RRF; cd00520"
/db_xref="CDD:29621"
misc_feature complement(order(182595..182606,182814..182825))
/gene="frr"
/locus_tag="RCA_00775"
/note="hinge region; other site"
/db_xref="CDD:29621"
gene complement(182917..183645)
/gene="pyrH"
/locus_tag="RCA_00780"
/db_xref="GeneID:11860467"
CDS complement(182917..183645)
/gene="pyrH"
/locus_tag="RCA_00780"
/EC_number="2.7.4.22"
/note="COG0528 Uridylate kinase"
/codon_start=1
/transl_table=11
/product="uridylate kinase"
/protein_id="YP_005299215.1"
/db_xref="GI:379022554"
/db_xref="GeneID:11860467"
/translation="MISDINALKYKKVLLKVSGEALMGDKQFGHEYDVIKKIAGDIKE
VIDLGVEVTIVVGGGNIYRGINAALVGMDRASADYIGMLATVINALTLQNVMESLNIY
TRVLSAIPMMSVCEPYIRRKAKRHMEKKRVVIFAGGTGNPFCTTDSAAVLRAIEMNCD
ILLKATQVDGVYDSDPKKNPNAKKYFTISYKDVITNNLQVMDMAAIAVAQENKLPIRI
FSIKDQGNFAKVIQDKGKYTTIEE"
misc_feature complement(182923..183615)
/gene="pyrH"
/locus_tag="RCA_00780"
/note="UMP kinase (UMPK)-Ec, the microbial/chloroplast
uridine monophosphate kinase (uridylate kinase) enzyme
that catalyzes UMP phosphorylation and plays a key role in
pyrimidine nucleotide biosynthesis; regulation of this
process is via feed-back control and...; Region:
AAK_UMPK-PyrH-Ec; cd04254"
/db_xref="CDD:58620"
misc_feature complement(order(183121..183126,183130..183132,
183136..183138,183145..183150,183205..183210,
183469..183477,183586..183591,183598..183600))
/gene="pyrH"
/locus_tag="RCA_00780"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(183208..183216,183220..183225,
183229..183231,183400..183405,183412..183414,
183454..183459,183469..183477))
/gene="pyrH"
/locus_tag="RCA_00780"
/note="uridine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:58620"
misc_feature complement(order(183010..183012,183178..183183,
183190..183192,183217..183225,183229..183231,
183253..183255,183271..183273,183280..183282,
183292..183294,183334..183336,183364..183366,
183385..183387,183406..183411,183433..183438))
/gene="pyrH"
/locus_tag="RCA_00780"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58620"
gene complement(183642..183968)
/locus_tag="RCA_00785"
/db_xref="GeneID:11860468"
CDS complement(183642..183968)
/locus_tag="RCA_00785"
/note="COG1863 Multisubunit Na+/H+ antiporter, MnhE
subunit"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_005299216.1"
/db_xref="GI:379022555"
/db_xref="GeneID:11860468"
/translation="MSTKIKFILYFPWLLLEIWKSAFSVIKIIWQRKIKIEPVFEWID
AEGLEVIGEIVYAHSITLTPGTVTLDINNNMLLVHALNKSSITTLQRGIMIKKIKQLK
ATSNRK"
misc_feature complement(183666..183968)
/locus_tag="RCA_00785"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK06580"
/db_xref="CDD:180628"
gene complement(183968..185521)
/locus_tag="RCA_00790"
/db_xref="GeneID:11860469"
CDS complement(183968..185521)
/locus_tag="RCA_00790"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein B"
/protein_id="YP_005299217.1"
/db_xref="GI:379022556"
/db_xref="GeneID:11860469"
/translation="MSNNNLQVTSNLSKRQLFAFYGMVVGMFMSVLDIQIVASSLSVI
AAGLAASSNELSWVQTSYLIAEVIIIPTSGFLARLLSTRIAYFIATLGFTVMSVLCSL
ATNIESMVIFRALQGFFGGAMIPTVFSTVFIIFPASQRPTITILIGLVVTVAPTLGPT
LGGYITEILSWHFMFLLNVIPGIFVCSVVFLYGDFDKPNYKLLKNFDFLGILLMALTL
GLLQYVLEEGNKKGWLEDNLILFLSIAVALGFILLIIRELTFINPILDLKTFLYKDFT
FGCLYSFVMGIGLYGAVYILPLFLFTIAGYDTLQIGATMMVTGGAQFLSAQLAGRMLG
LGVDLRLMLIIGLGGFALGCHLNSFLTPDSKFAAFILPQFVRGISLMFCFIPTNNIAL
GNMPKERIGNASGLYNLTRNLGGAVGLAIISTILTNDTKTFMQYFSENISSTSIMALE
QLDSYTELLSRKVLNPEKASYLLLANKLNNDAFVIAINNIFNMIGLVFVFIMLLIPFT
SNIKLTKNV"
misc_feature complement(183998..185473)
/locus_tag="RCA_00790"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
misc_feature complement(<184946..185464)
/locus_tag="RCA_00790"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(185057..185059,185075..185080,
185087..185092,185126..185128,185135..185140,
185147..185152,185159..185164,185300..185305,
185309..185314,185324..185326,185333..185338,
185345..185347,185396..185401,185405..185413,
185420..185422))
/locus_tag="RCA_00790"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(184211..>184714)
/locus_tag="RCA_00790"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene 185835..186038
/locus_tag="RCA_00795"
/db_xref="GeneID:11860470"
CDS 185835..186038
/locus_tag="RCA_00795"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299218.1"
/db_xref="GI:379022557"
/db_xref="GeneID:11860470"
/translation="MQNPAQKVISFSEHKSDIERIKKSIEEGWAIVKLVPNKNRFIGL
LEKISHAEDETIYIPPRKKIIVN"
misc_feature 185835..186035
/locus_tag="RCA_00795"
/note="Protein of unknown function (DUF2674); Region:
DUF2674; pfam10879"
/db_xref="CDD:151328"
gene complement(186618..186693)
/locus_tag="RCA_t05297"
/db_xref="GeneID:11860471"
tRNA complement(186618..186693)
/locus_tag="RCA_t05297"
/product="tRNA-Thr"
/db_xref="GeneID:11860471"
gene complement(186922..189228)
/locus_tag="RCA_00800"
/db_xref="GeneID:11860472"
CDS complement(186922..189228)
/locus_tag="RCA_00800"
/note="COG4775 Outer membrane protein/protective antigen
OMA87"
/codon_start=1
/transl_table=11
/product="outer membrane protein omp1"
/protein_id="YP_005299219.1"
/db_xref="GI:379022558"
/db_xref="GeneID:11860472"
/translation="MKSRSISKLTILLLTIFYYQISLADTVIRKITITGDHRVERSTI
ESYLKLKVGETYNNSKEDEAIKRLYATSLFKKINMYITNKGHLIVNVTETPFISSVVF
SGNSKIKTNMLAKEIYTMSGESLSQSKLELDVKKILEIYKRSGRFATTVTAKIENLEN
NRVKVIFDIAEGPKTVIKYIYFNGNDNYSDSELKSIVLTKESRWFRFLESNDTYDPDR
VEYDKELLREFYQSVGFADFRVISALAELNNTKEYFTLTYSIEEGEKYSFGNVTIDNK
LTNIDITPLNKIVNIKQGQVFNMQIVNDIAKKIGEYFTASGYPAVNVYPDIMKNVNHT
TDIKFIIEKADKVYINKINIINNLKTEDHVIRREFKIEEGDIINRSYIEKGERNLRNL
DYFEKVTISLAPTKAKDKYDVNVEVDEKSTSSIGFDLGYNTAGGLFGRFSFLERNLVG
TGKLLNTGVQVSKNSTSYYGTIIEPHFLDRDLSLSVNAFRNYAGHGGSVLNTTDQNYK
LHSIGLKTSLGYEIKEGLGHEIDYLIKRDILSAPTLSTSMFLKEQMGRFITSAIGHTI
TYDQTDNNIVPKNGYLISGTQEFAGVGGDNKYIKHEVDGKYYKSFIHNKLTLKLSASG
GDIAGLGGKIVRISDRFNLGDYSLRGFASGGVGPREKNTNEGLGGERYYTLSTELNFP
TPVPEEFNLTGAVFIDLGSVWGVGLNKKRYETLNGFYNDKSLRASVGFGFIWVTRFAP
IRMDWGFPVKKKKYDDTQHFHLRFSTHL"
misc_feature complement(186928..189150)
/locus_tag="RCA_00800"
/note="outer membrane protein assembly complex, YaeT
protein; Region: OM_YaeT; TIGR03303"
/db_xref="CDD:200260"
misc_feature complement(188950..189150)
/locus_tag="RCA_00800"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(188713..188946)
/locus_tag="RCA_00800"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(188440..188703)
/locus_tag="RCA_00800"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(188203..188433)
/locus_tag="RCA_00800"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(187969..188154)
/locus_tag="RCA_00800"
/note="Surface antigen variable number repeat; Region:
Surf_Ag_VNR; pfam07244"
/db_xref="CDD:203601"
misc_feature complement(186925..187890)
/locus_tag="RCA_00800"
/note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
/db_xref="CDD:144626"
gene complement(189532..190608)
/locus_tag="RCA_00805"
/db_xref="GeneID:11860473"
CDS complement(189532..190608)
/locus_tag="RCA_00805"
/note="COG0750 Predicted membrane-associated Zn-dependent
proteases 1"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_005299220.1"
/db_xref="GI:379022559"
/db_xref="GeneID:11860473"
/translation="MLSIVGFIITISFLVFIHEFGHYAVARYVNVKVEEFSIGFGKEL
IGISDKKGVRWKIGLVPLGGYVKIYGYDRTLIANAKEVNEKVAFYAKSCLERFLIVAA
GPLINYLLAIIIFTGLYCYFGKTEIPPIIGDVVASSPAETADLREGDKIIKVNNKPVK
DFGDVQKEILINGFSSSTLTIERNNEEFTVNIMPQEIIITHPEAKNVKKTLRIGIIAK
NAPIHTKIGILIGFWEAINTTIDMSALTLKAISQMIVGKRSLDEIGGPVAIARESGKS
IAQGAQMYLLFIAMLSVNLGLLNLLPIPVLDGGHLIFILYEAITGRLPNPKTKNILLQ
LGAAIIVFLIIISVSNDIQNLFFK"
misc_feature complement(189538..190608)
/locus_tag="RCA_00805"
/note="Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane];
Region: COG0750"
/db_xref="CDD:31093"
misc_feature complement(<190255..190599)
/locus_tag="RCA_00805"
/note="RseP-like Site-2 proteases (S2P), zinc
metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
/db_xref="CDD:100084"
misc_feature complement(order(190543..190545,190552..190557))
/locus_tag="RCA_00805"
/note="active site"
/db_xref="CDD:100084"
misc_feature complement(190027..190260)
/locus_tag="RCA_00805"
/note="PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ...;
Region: PDZ_metalloprotease; cd00989"
/db_xref="CDD:29046"
misc_feature complement(order(190099..190104,190111..190116,
190243..190245,190249..190260))
/locus_tag="RCA_00805"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29046"
misc_feature complement(189547..>189756)
/locus_tag="RCA_00805"
/note="Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves transmembrane
domains of substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of this family use proteolytic...;
Region: S2P-M50; cl10020"
/db_xref="CDD:209123"
misc_feature complement(189703..189714)
/locus_tag="RCA_00805"
/note="putative substrate binding region [chemical
binding]; other site"
/db_xref="CDD:100078"
gene 190871..191341
/gene="nusB"
/locus_tag="RCA_00810"
/db_xref="GeneID:11860474"
CDS 190871..191341
/gene="nusB"
/locus_tag="RCA_00810"
/note="COG0781 Transcription termination factor"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein NusB"
/protein_id="YP_005299221.1"
/db_xref="GI:379022560"
/db_xref="GeneID:11860474"
/translation="MGSNKINKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQN
NNSITDLSENLKISLSISHFKMLVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRAL
FRVSICELLFCPTTPAKVVINEYTDIANDMLNEHEIGFVNSVLDKIAKENKKIL"
misc_feature 190895..191326
/gene="nusB"
/locus_tag="RCA_00810"
/note="Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role in
the regulation of ribosomal RNA biosynthesis in eubacteria
by modulating the efficiency of transcriptional
antitermination. NusB along with other Nus...; Region:
Terminator_NusB; cd00619"
/db_xref="CDD:29565"
misc_feature order(190895..190897,190907..190909)
/gene="nusB"
/locus_tag="RCA_00810"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:29565"
gene 191338..192021
/locus_tag="RCA_00815"
/db_xref="GeneID:11860475"
CDS 191338..192021
/locus_tag="RCA_00815"
/note="COG0293 23S rRNA methylase"
/codon_start=1
/transl_table=11
/product="ribosomal RNA large subunit methyltransferase J"
/protein_id="YP_005299222.1"
/db_xref="GI:379022561"
/db_xref="GeneID:11860475"
/translation="MTNNLSGYRNKFVRVKTSKKRTVSSNNWLRRQLNDPYVAKARTQ
GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQIASKLIKASDNSLNNKIISI
DLLEVRPIVGVEFFQKDFFEEDTEKLIIQALDGKANIVMSDMASNTIGHKATDHIRTL
LLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVKREFRTVKHFKPLSSRSESTE
IYLVALNKK"
misc_feature 191407..192018
/locus_tag="RCA_00815"
/note="23S rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: FtsJ; COG0293"
/db_xref="CDD:30641"
misc_feature 191542..191898
/locus_tag="RCA_00815"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(191554..191574,191644..191649,191689..191697,
191764..191766)
/locus_tag="RCA_00815"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(192068..192289)
/locus_tag="RCA_00820"
/db_xref="GeneID:11860476"
CDS complement(192068..192289)
/locus_tag="RCA_00820"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299223.1"
/db_xref="GI:379022562"
/db_xref="GeneID:11860476"
/translation="MLDNMIFGIARFIRGAADTASNIVEANINIISTTLSTIIDNEDI
VNNPTIIEQLDDNWVVVSLGDESSSVTKS"
gene complement(192283..193398)
/locus_tag="RCA_00825"
/db_xref="GeneID:11860477"
CDS complement(192283..193398)
/locus_tag="RCA_00825"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299224.1"
/db_xref="GI:379022563"
/db_xref="GeneID:11860477"
/translation="MKEFESLTVAEIPINTINYKEFAHLGVNLAYKTDDAKRYLAEAL
VTDGSHLVGSGWEILAASCSNANTAQYGYKAVAFINKETKTIHIASAGTKADMHDIWD
DARITFHYNPNKLVTVKKFIDEVIDKIGGIEKAAEYIFDTSGHSLGAIVADLTGVELH
SRNLNFNQSVTFDSPGSQEVIKYAIDQDLFTGKVTTPLEELAKHSEVYNAKPNIINTT
NYHSGKINLVLPKVNNIETSESSTTEGWGSYLYNMVGSVVQTASKYLGINKIMEGIDN
HKLKNFANLEDQIILPIADWEQQILENNEYTQQLKAISGQGKDLFLLDTYVADECSSM
VGVNMYHWGYSDLQQSCAMEVKQIGNIDLYNSIEIVC"
gene complement(194074..194514)
/locus_tag="RCA_00830"
/db_xref="GeneID:11860478"
CDS complement(194074..194514)
/locus_tag="RCA_00830"
/note="COG2867 Oligoketide cyclase/lipid transport
protein"
/codon_start=1
/transl_table=11
/product="oligoketide cyclase/lipid transport protein"
/protein_id="YP_005299225.1"
/db_xref="GI:379022564"
/db_xref="GeneID:11860478"
/translation="MPSFEQIKVLPYKPQELFDLVWDIKSYPKFLPWCVASRILSEDP
YEIIAELVIQLKGFSEKYNSRVTNAITDNGIYLIDTVAIAGPFEYLTSTWQFVPRTTG
TKLKFFIDLKMQSVILDKLISTYFTKATEKIIVAFEKRAQDIIR"
misc_feature complement(194083..194493)
/locus_tag="RCA_00830"
/note="Coenzyme Q-binding protein COQ10p and similar
proteins; Region: COQ10p_like; cd07813"
/db_xref="CDD:176855"
misc_feature complement(order(194104..194106,194113..194121,
194125..194133,194137..194151,194182..194184,
194188..194190,194194..194196,194200..194202,
194227..194229,194233..194235,194239..194244,
194275..194277,194281..194283,194305..194307,
194317..194319,194323..194325,194356..194358,
194362..194364,194368..194370,194374..194376,
194404..194406,194449..194454,194458..194466,
194491..194493))
/locus_tag="RCA_00830"
/note="putative coenzyme Q binding site [chemical
binding]; other site"
/db_xref="CDD:176855"
gene complement(195047..195871)
/gene="dapD"
/locus_tag="RCA_00835"
/db_xref="GeneID:11860479"
CDS complement(195047..195871)
/gene="dapD"
/locus_tag="RCA_00835"
/EC_number="2.3.1.117"
/note="COG2171 Tetrahydrodipicolinate
N-succinyltransferase"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_005299226.1"
/db_xref="GI:379022565"
/db_xref="GeneID:11860479"
/translation="MYNLIKEIEEAWQIKDMLLQDSAKLITLKKTLNYIIESLNQGTI
RVCEKKENGWQVNEWVKKAILLYFITTESQLYSNNYNSWYDKVAPKFSADIDKNIFKE
ASIRTVPGAFVRTGTYIAKNVVIMPSFINLGAYIDERTMIDTWATIGSCAQIGKNCHI
SGGTGIGGVLEPLQAKPVIIEDNCFIGARSEIAEGVIVEEGAVISMGAFIGSSTKIVY
RDTGEIIYGRVPAYSVVVPGVLPAKEAGKPGLYCVVIIKQVDKTTRARVSINDLLR"
misc_feature complement(195050..195871)
/gene="dapD"
/locus_tag="RCA_00835"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature complement(195149..195559)
/gene="dapD"
/locus_tag="RCA_00835"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature complement(order(195149..195151,195155..195166,
195245..195247,195299..195301,195305..195307,
195383..195385,195431..195439,195485..195487,
195491..195493,195539..195544,195551..195556))
/gene="dapD"
/locus_tag="RCA_00835"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature complement(order(195254..195259,195290..195292,
195305..195313,195350..195352,195359..195364,
195368..195370,195389..195391,195395..195397,
195422..195424,195443..195445,195479..195481,
195494..195496,195530..195532,195554..195556))
/gene="dapD"
/locus_tag="RCA_00835"
/note="active site"
/db_xref="CDD:100041"
misc_feature complement(order(195362..195364,195422..195424,
195443..195445,195479..195481,195494..195496,
195530..195532,195554..195556))
/gene="dapD"
/locus_tag="RCA_00835"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature complement(order(195254..195259,195290..195292,
195305..195313,195350..195352,195368..195370,
195386..195391))
/gene="dapD"
/locus_tag="RCA_00835"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 195951..196571
/locus_tag="RCA_00840"
/db_xref="GeneID:11860480"
CDS 195951..196571
/locus_tag="RCA_00840"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299227.1"
/db_xref="GI:379022566"
/db_xref="GeneID:11860480"
/translation="MYITCPNCQTKFIVTSNQIGINGRRVKCSKCSHLWYQKLDYNTS
KLNDCKDKVNTETITNHYNANVPVILPCIPPKKKYNIFPILWTHFIIFCLVILLVDSF
KFLGKYDQLKIEQINLGKSLHIGRMRIFYKLSNESDYLISDPIIKVRVMDTNNQALDE
YISITRLQTKIPAKQAIYLEMNLAGIPITAKYINIAIGNRLGLLFK"
misc_feature 195951..196064
/locus_tag="RCA_00840"
/note="MJ0042 family finger-like domain; Region:
MJ0042_CXXC; TIGR02098"
/db_xref="CDD:131153"
gene complement(196897..197253)
/locus_tag="RCA_00845"
/db_xref="GeneID:11860481"
CDS complement(196897..197253)
/locus_tag="RCA_00845"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299228.1"
/db_xref="GI:379022567"
/db_xref="GeneID:11860481"
/translation="MNFHIRELNEELINYKLSLRILFTILSVAIIIVAFDSLGSSGDP
VGDTLCKLIKVFRGNTAKGIAVVGIIVLGIQTLRGKLQWEVALVVVTAIIILFKAPDI
VNMVSSDTNSSNCGVS"
misc_feature complement(196909..197226)
/locus_tag="RCA_00845"
/note="Type IV secretory pathway, VirB2 components
(pilins) [Intracellular trafficking and secretion];
Region: VirB2; COG3838"
/db_xref="CDD:33630"
gene complement(197403..198254)
/locus_tag="RCA_00850"
/db_xref="GeneID:11860482"
CDS complement(197403..198254)
/locus_tag="RCA_00850"
/note="COG1845 Heme/copper-type cytochrome/quinol oxidase,
subunit 3"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase subunit III"
/protein_id="YP_005299229.1"
/db_xref="GI:379022568"
/db_xref="GeneID:11860482"
/translation="MSQKIILNNSHPITKSHLFHVVDPSPWPILTSFALLLLVIGSVS
FMHGYKFNVYILSAGVISVVYCLYSWWRDVVKEGIVEHQHTIPVRKGLQIGMALFILT
EIVFFGVFFASFFKSSLSPVGLLDGVWVVKQGVWPPPTIKTFDPFDIPFINTLILLLS
GTTVTWAHYALEEKNQKDCVTALALTILLGIFFTTMQAYEYYHAAFKFTDGIYASNFY
LATGFHGAHVIIGTIFLIVCYFRAKRGDFTTEGNGYLGFEFAAWYWHFIDLVWLFLFT
FVYIFGS"
misc_feature complement(197412..198170)
/locus_tag="RCA_00850"
/note="Cytochrome c oxidase subunit III. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_III; cd01665"
/db_xref="CDD:29485"
misc_feature complement(order(198012..198020,198027..198029,
198036..198041,198048..198050))
/locus_tag="RCA_00850"
/note="Subunit III/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(order(197487..197492,197532..197534,
197553..197555,197958..197960,197967..197972,
198003..198005,198021..198023,198030..198035,
198042..198047))
/locus_tag="RCA_00850"
/note="Phospholipid binding site [chemical binding]; other
site"
/db_xref="CDD:29485"
misc_feature complement(order(197598..197600,197610..197612,
197619..197624,197907..197909,197925..197930,
197940..197942,197949..197951,197982..197987,
197994..197996))
/locus_tag="RCA_00850"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(197838..197840)
/locus_tag="RCA_00850"
/note="Subunit III/VIb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature complement(order(197622..197630,197643..197651,
197679..197681,197757..197759,197808..197816))
/locus_tag="RCA_00850"
/note="Subunit III/VIa interface; other site"
/db_xref="CDD:29485"
misc_feature complement(197721..197723)
/locus_tag="RCA_00850"
/note="Subunit III/Vb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
gene complement(198867..199406)
/locus_tag="RCA_00855"
/db_xref="GeneID:11860483"
CDS complement(198867..199406)
/locus_tag="RCA_00855"
/note="COG2941 Ubiquinone biosynthesis protein COQ7"
/codon_start=1
/transl_table=11
/product="ubiquinone biosynthesis protein coq7"
/protein_id="YP_005299230.1"
/db_xref="GI:379022569"
/db_xref="GeneID:11860483"
/translation="MPRPDFSDPHKQIHEIIRVNHAGEYGATRIYQGQLKYIKSQNDY
ILIKEMLDHEEIHLNFFEKKLLEKKVRPTILLFLWHYYGFLLGALSSLMGIKTAMLIT
ESVEEVIEKHYEQQINYLHGLGCEQELLDNITKFRLDEIEHKNIAIMHDSTKAIFAEI
SSKVVKIICRISIILSKKI"
misc_feature complement(198873..199370)
/locus_tag="RCA_00855"
/note="Demethoxyubiquinone hydroxylase, ferritin-like
diiron-binding domain; Region: DMQH; cd01042"
/db_xref="CDD:153101"
misc_feature complement(order(198978..198980,198987..198989,
199089..199091,199236..199238,199245..199247,
199335..199337))
/locus_tag="RCA_00855"
/note="diiron binding motif [ion binding]; other site"
/db_xref="CDD:153101"
gene complement(199553..200524)
/gene="holA"
/locus_tag="RCA_00860"
/db_xref="GeneID:11860484"
CDS complement(199553..200524)
/gene="holA"
/locus_tag="RCA_00860"
/note="COG1466 DNA polymerase III, delta subunit"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_005299231.1"
/db_xref="GI:379022570"
/db_xref="GeneID:11860484"
/translation="MKFYFSQIKRLFALITAGKIRALLLYGPDKGYIEKICKHLVKSL
NMLQTSIEYTELNIASLEILLNSPNFFGQKELIKVRSVGNSIDQNLKKILSRDYINFP
VFIGEEMTSSSSFRKFFETEEYLAAAACYHDDEVKIERIILDQVGKTNKIISKEANAY
LKAHLKGDHNLVCNEINKLIYFVHDRKEITLNDVLEVISSKITANGSDLAIYFSKKDY
SNFLQELDILKKQNINEVLMIRALIRHYLNLYIVLSKVKNGECLELAIKSLSPPIFYQ
YINDFTKIASSLSLAECLETLKLLQQAEVEYKLNPASFDLLQKIYTR"
misc_feature complement(199562..200524)
/gene="holA"
/locus_tag="RCA_00860"
/note="DNA polymerase III subunit delta; Reviewed; Region:
holA; PRK06585"
/db_xref="CDD:180631"
gene complement(200692..201162)
/locus_tag="RCA_00865"
/db_xref="GeneID:11860485"
CDS complement(200692..201162)
/locus_tag="RCA_00865"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299232.1"
/db_xref="GI:379022571"
/db_xref="GeneID:11860485"
/translation="MRSVFIIIFFLISSCNLKPVYREAYNRNDDLEAIEVEPIKTIEG
AEFYHRLTSILPQKTKAKYLLKVELIATTMPATIDKKSNILREYINQLVRYKLIDIES
QKVLIEEQFYQNTSYNAIFTPYATNVERHGTGIDLAYQAAEEIRSRLILYFIRK"
gene 201336..201662
/locus_tag="RCA_00870"
/db_xref="GeneID:11860486"
CDS 201336..201662
/locus_tag="RCA_00870"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299233.1"
/db_xref="GI:379022572"
/db_xref="GeneID:11860486"
/translation="MNKTCNIPPQIIFKVLMKLYITCSSIQKCSKSNKNIYINTDKAK
TKTVKITREDLEKSFKLHEEKLIILAQKLSSQEPINNDDYNPQTEYYRLIGDDGISQY
IPTTEL"
misc_feature <201357..201587
/locus_tag="RCA_00870"
/note="Temperature dependent protein affecting M2 dsRNA
replication; Region: MKT1_C; pfam12246"
/db_xref="CDD:204864"
gene complement(202630..204102)
/locus_tag="RCA_00875"
/db_xref="GeneID:11860487"
CDS complement(202630..204102)
/locus_tag="RCA_00875"
/note="COG0265 Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta"
/protein_id="YP_005299234.1"
/db_xref="GI:379022573"
/db_xref="GeneID:11860487"
/translation="MTKLSIVLKLLFIINLVFLNKIVLASAEMNSTIFEKAKKAIVTI
DTRIAVSAYEDTSSWTGTGFINDKQNGYIITNTHVVGVASIGTYFVTFYNGEQAEAKL
IYYDIWQDYAILKVESKDIPASVTQISFASELPKLNQKVFVVGNTEAQGFSFHTGYLS
DLYNIAGMMPQCTYVISLNTTGGASGSPVLNDKIEAIGVLYGGGKTHSLALHGDYVAR
TLESLKNNKEPKRHHIGVISELYSLNKAVKHHNFPKEEMDKYINKFPDSRNRVISVKT
ILAGSPAEKLLKAGDIIWAVNDKELGGNLALFDKEMDNFKGIAIKLTIFRDGKKLEQI
VDLYDINSNKITKMVNFGGAIFFETDDYFSNKSGIPLKALSIASVQSGSSFSSIPTFF
TKDYKNIYRLQMLEIKDLNLSNIDDLVKFLPAITKEKFITVRFRNYQPYYANFGYNEL
ISSHNNMIADVTLDSIDIKPYILKYNTISHDWDMENIKFQ"
misc_feature complement(203086..204093)
/locus_tag="RCA_00875"
/note="Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones]; Region: DegQ; COG0265"
/db_xref="CDD:30614"
misc_feature complement(203506..203922)
/locus_tag="RCA_00875"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:205544"
misc_feature complement(203098..>203283)
/locus_tag="RCA_00875"
/note="PDZ domain of tryspin-like serine proteases, such
as DegP/HtrA, which are oligomeric proteins involved in
heat-shock response, chaperone function, and apoptosis.
May be responsible for substrate recognition and/or
binding, as most PDZ domains bind...; Region:
PDZ_serine_protease; cd00987"
/db_xref="CDD:29044"
gene 204190..206073
/gene="dnaK"
/locus_tag="RCA_00880"
/db_xref="GeneID:11860488"
CDS 204190..206073
/gene="dnaK"
/locus_tag="RCA_00880"
/note="COG0443 Molecular chaperone"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_005299235.1"
/db_xref="GI:379022574"
/db_xref="GeneID:11860488"
/translation="MGKVIGIDLGTTNSCVAVMEGKEPKVIENSEGERTTPSIIAFAN
GEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFTDPMVKKDQDIVPYNIVKAQNGDAWV
EADNNKYSPSQISAFILQKMKETAENYLGEKVTQAVITVPAYFNDAQRQATKDAGKIA
GLEVLRIINEPTAAALAYGFDKSASKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGD
TFLGGEDFDTRILNHLIDVFKKASGIDLRNDPLALQRLKEAAEKSKKELSSAVTTDIN
LPYITADSSGPKHLNIKFTRAELEKLVDDLIEKTIEPCRQALKDAGLKPSNIQEVVLV
GGMTRMPKVQEAVKKFFGREPHKGVNPDEVVALGAAIQGGVLNKEVTDILLLDVTPLS
LGIETLGGVFTRLIERNTTIPTKKSQIFSTADDNQHAVTIRVFQGERQMAKDNKLLGQ
FNLEGIPPAPRGVPQIEVTFDIDVNGIVHVSAKDKASGKEQKVTIQASGGLSDAEIAQ
MVKDAEQNADEDKKRKELIETKNAADSLVYSTEKTLKDYSDKLSSEDKGLVEEALAAL
KAVLDSEDAALIKEKTESLTAASMKIGEAMYKAQSEGQPSEENTANDEKVVDADFKDV
EKK"
misc_feature 204190..206070
/gene="dnaK"
/locus_tag="RCA_00880"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 204190..205317
/gene="dnaK"
/locus_tag="RCA_00880"
/note="Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins; Region:
HSPA9-like_NBD; cd11733"
/db_xref="CDD:212683"
misc_feature order(204217..204228,204394..204396,204697..204699,
204769..204774,204778..204780,204856..204858,
204970..204972,204979..204981,204991..204993,
205192..205200,205204..205206)
/gene="dnaK"
/locus_tag="RCA_00880"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(204271..204273,204280..204282,204331..204333,
204343..204345,204352..204357,204361..204366,
204571..204582,204940..204942,204949..204954,
204961..204963,205015..205017,205021..205026)
/gene="dnaK"
/locus_tag="RCA_00880"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(204628..204633,204637..204642,204685..204690,
204694..204696,204817..204828)
/gene="dnaK"
/locus_tag="RCA_00880"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212683"
gene 206190..207317
/locus_tag="RCA_00885"
/db_xref="GeneID:11860489"
CDS 206190..207317
/locus_tag="RCA_00885"
/note="COG0484 DnaJ-class molecular chaperone with
C-terminal Zn finger domain"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_005299236.1"
/db_xref="GI:379022575"
/db_xref="GeneID:11860489"
/translation="MSQDYYQILGVSKTASSAELKKAYHKLAKQYHPDNAAAGDTNAE
KKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRRGAGGGTSSFHPDINDIFGDFF
SDFMGGSRRSRPTSSKVRGSDLKYDLTINLEEAFHGIEKNISFSSEVQCDTCHGNGSE
KGETITTCDACSGVGVTRIQQGFFTIEQTCHKCQGNGQMIKNPCKKCHGMGRYHKQRN
LLVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDISIKPHDIYKVDGANLHCKLPI
SFVNAALGGEVEVPIIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH
VEVPKNLSKRQRELLEEFKKESISEKENDSSFFNKMKSLWS"
misc_feature 206190..207314
/locus_tag="RCA_00885"
/note="chaperone protein DnaJ; Provisional; Region:
PRK14300"
/db_xref="CDD:172788"
misc_feature 206199..206366
/locus_tag="RCA_00885"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(206283..206291,206319..206321,206328..206333,
206340..206345)
/locus_tag="RCA_00885"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 206553..>206636
/locus_tag="RCA_00885"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature order(206565..206567,206610..206627)
/locus_tag="RCA_00885"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 206640..206822
/locus_tag="RCA_00885"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(206640..206642,206649..206651,206691..206693,
206700..206702,206757..206759,206766..206768,
206799..206801,206808..206810)
/locus_tag="RCA_00885"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 206823..207212
/locus_tag="RCA_00885"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(207021..207026,207033..207038,207099..207110,
207198..207212)
/locus_tag="RCA_00885"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene 207452..207640
/locus_tag="RCA_00890"
/db_xref="GeneID:11860490"
CDS 207452..207640
/locus_tag="RCA_00890"
/note="COG4572 Putative cation transport regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299237.1"
/db_xref="GI:379022576"
/db_xref="GeneID:11860490"
/translation="MLRIFYREAFNHAFERYNDADKRHKDDSREAVAHKVACSAVEKQ
YHKNDKGHWLEEISPRNL"
misc_feature <207452..207619
/locus_tag="RCA_00890"
/note="ChaB; Region: ChaB; cl01887"
/db_xref="CDD:186488"
gene 207721..208464
/locus_tag="RCA_00895"
/db_xref="GeneID:11860491"
CDS 207721..208464
/locus_tag="RCA_00895"
/note="COG4105 DNA uptake lipoprotein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299238.1"
/db_xref="GI:379022577"
/db_xref="GeneID:11860491"
/translation="MKLAKLLSVLFIIGLSLSGCKSKKNSDDIVVPIPTLYNEGITLL
EKKKYKKAAEEFGRVFYQHPGNEMTPQAELMQAYSLFLATQYEEAVDVLDMFINLHPA
NVDIAYAYYLKALSYYMLISDVNHDQSRTFLAKDSFKDIIEKFSNTKYAIDASLKIDL
VNDHLAGKEMMVGRFYLKKKNPIAAINRFEEVIDHYQTTSHSVEALYRLAESYMMLGL
PDEAKKYASVLGYNYPDSQWYSYAYKLVK"
misc_feature 207730..208425
/locus_tag="RCA_00895"
/note="outer membrane assembly lipoprotein YfiO; Region:
OM_YfiO; TIGR03302"
/db_xref="CDD:188304"
misc_feature 208330..208428
/locus_tag="RCA_00895"
/note="Tetratricopeptide repeat; Region: TPR_6; pfam13174"
/db_xref="CDD:205355"
gene 208621..210261
/locus_tag="RCA_00900"
/db_xref="GeneID:11860492"
CDS 208621..210261
/locus_tag="RCA_00900"
/note="COG0497 ATPase involved in DNA repair"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecN"
/protein_id="YP_005299239.1"
/db_xref="GI:379022578"
/db_xref="GeneID:11860492"
/translation="MLQSLLVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILF
CLGYKISNNIIKRGKDYAVVSIIFSLNEEIKNFLLQNFIEPEELLLVKCLHKTEGRKK
FFINNQVVNKTLMQQLATYLFELHGQNHNISLLEANTQRDILDSYGNILDFRAELSKC
YQIWKDTQKEIAEITLKQNSIEQEIDYLSFATEELTKLNIQIDEEEKLANIRKDLQNK
DKELQLIKDTLEQINNPEINISINRAETLLARQGQNKHFKTIATSLEEAYNNLEEARQ
ELSNLLDSFNYKESNLEETEERLFLIKAISRKYNVPANGLGVFLDKSLEQLGILKNKI
ANSNELKAQEVLLQQKYYELASGLSKKRLIAAKHLEESLHQELKQLKMAKTIFRIEIT
ARKEPTACGNDDIVFKASTNPGTAAEAINKIASNGELSRCMLALKTSLFDKMVKASII
FDEIDVGIGGEVADKVGERLKKLSTVTQVIVITHQPQVAGKADLHIKIEKTQLEKETK
VTAKALSLSERQEELARMISGKTITKTSLKAAKELLHL"
misc_feature 208621..210258
/locus_tag="RCA_00900"
/note="ATPase involved in DNA repair [DNA replication,
recombination, and repair]; Region: RecN; COG0497"
/db_xref="CDD:30843"
misc_feature 208624..>209058
/locus_tag="RCA_00900"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature 208705..208728
/locus_tag="RCA_00900"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73000"
misc_feature order(208714..208719,208723..208731,209029..209031)
/locus_tag="RCA_00900"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73000"
misc_feature 209020..209031
/locus_tag="RCA_00900"
/note="Q-loop/lid; other site"
/db_xref="CDD:73000"
misc_feature <209821..210207
/locus_tag="RCA_00900"
/note="RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and...;
Region: ABC_RecN; cd03241"
/db_xref="CDD:73000"
misc_feature 209890..209919
/locus_tag="RCA_00900"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73000"
misc_feature 209962..209979
/locus_tag="RCA_00900"
/note="Walker B; other site"
/db_xref="CDD:73000"
misc_feature 209986..209997
/locus_tag="RCA_00900"
/note="D-loop; other site"
/db_xref="CDD:73000"
misc_feature 210058..210078
/locus_tag="RCA_00900"
/note="H-loop/switch region; other site"
/db_xref="CDD:73000"
gene 210541..211935
/locus_tag="RCA_00905"
/db_xref="GeneID:11860493"
CDS 210541..211935
/locus_tag="RCA_00905"
/note="COG2317 Zn-dependent carboxypeptidase"
/codon_start=1
/transl_table=11
/product="thermostable carboxypeptidase"
/protein_id="YP_005299240.1"
/db_xref="GI:379022579"
/db_xref="GeneID:11860493"
/translation="MPIGSGESRSNEIITLTSLVHSMLKSPLLKELLSKAKEESKNLN
NWQNANIREIERKITDANCIDEQLQKKLVAATNKAELVWREARKNNDYNLFKPHLQKV
LDYTKEVAKARADVFNCGLYDSLIDMYDPSRKSNEIKQVFSVLKKELRELINKVLEKQ
KGEKKLVKISRLDPKLQKLIGKRIMEIMQFDLAKGRLDESNHPFCSGTPNDIRLTTRY
DKDNFISGLMGIIHETGHALYEQNLPEMYKGQPVGLAKGMAFHESQSLFMEMQVGRSR
EFTEFLAKLLHDEFNIKGEEYSAENLYRKITRVMPDFIRVYADEITYPMHVILRFEIE
ELLINGNLNLDDLPTFWDSNMVEYLGIKPTSFSNGCLQDIHWSHGSFGYFPAYTNGAI
IAAMMMKKVKEMHPNIKDDILNGDFSNLNNYLNKNFRNLGSLNNSADLLKSASGEDKI
NPEVYIKYLEGKYL"
misc_feature 210541..211932
/locus_tag="RCA_00905"
/note="Zn-dependent carboxypeptidase [Amino acid transport
and metabolism]; Region: COG2317"
/db_xref="CDD:32471"
misc_feature 210541..211932
/locus_tag="RCA_00905"
/note="Peptidase family M32 includes thermostable
carboxypeptidases TaqCP and PfuCP; Region: M32_Taq;
cd06460"
/db_xref="CDD:188998"
misc_feature order(211234..211239,211246..211248,211324..211326,
211663..211665,211690..211692,211699..211701)
/locus_tag="RCA_00905"
/note="active site"
/db_xref="CDD:188998"
misc_feature order(211234..211236,211246..211248,211324..211326)
/locus_tag="RCA_00905"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:188998"
gene 212172..214961
/gene="sucA"
/locus_tag="RCA_00910"
/db_xref="GeneID:11860494"
CDS 212172..214961
/gene="sucA"
/locus_tag="RCA_00910"
/EC_number="1.2.4.2"
/note="COG0567 2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, and related enzymes"
/codon_start=1
/transl_table=11
/product="2-oxoglutarate dehydrogenase E1 component"
/protein_id="YP_005299241.1"
/db_xref="GI:379022580"
/db_xref="GeneID:11860494"
/translation="MEEYLKKTDFLFGGNAVFLEELYRQYLTNPTSVDQTWQKFFSQV
KDNNESLFNQSTAKIIISNDTKKESLNNNLSSESLNSFKAKEMINAYRKYAHYLANLD
PLGLEIRKTKNDLKLNIETFGFDSGQLEENINITDEFVGTWNCKLSELVTKLDKVYTN
SIGIEFEQIENVEEKNWLYNKLESEVIFSSEEKKAILNDLVEVEGFEQYLHTKFPGAK
RFSIEGGDASIVAMSKAIDLSMHQGVEELVIGMAHRGRLNTITKVVGKPYKAVIAGFI
SGSVFPDELNVSGDVKYHLGYSSDRVVGDKKIHLSLAYNPSHLEAVNPIVAGKVRAKQ
DILKDTKRNKVKAILVHGDAAFCGQGVVAESLSMSPLAAYDIGGILHFVINNQLGFTA
NAADTRASRYSTEFAKIIAAPILHVNGDDIEAVLKATNIAVEYRQKFGKDVVVEIVCY
RKYGHNEGDEPMYTQCQMYNIIKSKPTPGNIYANELVKSGIIDHSYFPKLKEAFKAKL
DKEYEHAKSYKHEAHFLGGLWQGISRTLKSTSVTGINKKTLQDLGTKLCTIPKNFTVN
AKLVKLFDARKASLTTDKPIDWATAEQLAFATLLNTGTYIRLTGQDSERGTFSHRHSV
LHNQIDDTTYIPLNNLSKNQAKCEVADSNLSEYAVLGFEYGYSLANPKNLILWEAQFG
DFANGAQIIFDQFIASAETKWLRMSGLVVLLPHAFEGQGPEHSSARLERFLQLAAEDN
MYVTYPTTPASIFHLLRRQILDDTRKPLIVMSPKSLLRHKYAVSKLDELGENTTFLPV
LDEVNKVDANNITKVILCSGKVYYDLFEMRGNNSNIAIIRLEQLYPFEKKVVASLLKK
YNRTQEFIWCQEEPKNMGAWRYIVSHLNDALKEAAINNEFRYVGREESASPAVGSLQV
HNKQQERLLKEAIEI"
misc_feature 212172..214955
/gene="sucA"
/locus_tag="RCA_00910"
/note="2-oxoglutarate dehydrogenase E1 component;
Reviewed; Region: sucA; PRK09404"
/db_xref="CDD:181824"
misc_feature 212787..213578
/gene="sucA"
/locus_tag="RCA_00910"
/note="Thiamine pyrophosphate (TPP) family, E1 of
OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the 2-oxoglutarate
dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
the oxidative decarboxylation of...; Region:
TPP_E1_OGDC_like; cd02016"
/db_xref="CDD:48179"
misc_feature order(213126..213128,213225..213236,213327..213329,
213333..213335)
/gene="sucA"
/locus_tag="RCA_00910"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48179"
misc_feature 213921..214511
/gene="sucA"
/locus_tag="RCA_00910"
/note="Transketolase, pyrimidine binding domain; Region:
Transket_pyr; pfam02779"
/db_xref="CDD:202390"
misc_feature order(214122..214127,214134..214136,214227..214232,
214245..214247,214365..214367,214377..214379)
/gene="sucA"
/locus_tag="RCA_00910"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132915"
misc_feature order(214122..214127,214134..214136,214143..214145,
214152..214157,214161..214169,214176..214178,
214248..214253,214263..214265)
/gene="sucA"
/locus_tag="RCA_00910"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132915"
misc_feature order(214137..214139,214230..214232)
/gene="sucA"
/locus_tag="RCA_00910"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132915"
gene 215129..216334
/locus_tag="RCA_00915"
/db_xref="GeneID:11860495"
CDS 215129..216334
/locus_tag="RCA_00915"
/EC_number="2.3.1.61"
/note="COG0508 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide acyltransferase (E2) component,
and related enzymes"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide succinyltransferase"
/protein_id="YP_005299242.1"
/db_xref="GI:379022581"
/db_xref="GeneID:11860495"
/translation="MSIKIIVPSLGESVTEATIAKWYKKEGDSVKTDDLLLEIETEKV
TLEVNAPCSGTIGKILKTDGANVEVGEEIGEINEGAVANTAGTNNESANSQAATQPTS
EKPIEKPAVANNTLAPSVQKLVTENKLDPNNIKGTGRDGRITKGDVLETLNTPPAATT
APAMSKANEDRVQRVRMSRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRNQYKE
EFEKKHAVKLGFMSFFVKATIEALKLIPSVNAEIDGNDLVYKNYYDIGVAVGTELGLV
VPVVRGADKMEFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPII
NPPQAGILGLHKTEERPVVIDGKIEVRPMMYIALSYDHRIIDGKEGVSFLIKIKQLIE
NPEKLLLNL"
misc_feature 215129..216331
/locus_tag="RCA_00915"
/note="dihydrolipoamide succinyltransferase; Validated;
Region: PRK05704"
/db_xref="CDD:180214"
misc_feature 215135..>215308
/locus_tag="RCA_00915"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(215225..215227,215246..215263,215273..215275)
/locus_tag="RCA_00915"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 215255..215257
/locus_tag="RCA_00915"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 215474..215578
/locus_tag="RCA_00915"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 215690..216325
/locus_tag="RCA_00915"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene 216492..216908
/locus_tag="RCA_00920"
/db_xref="GeneID:11860496"
CDS 216492..216908
/locus_tag="RCA_00920"
/note="COG0720 6-pyruvoyl-tetrahydropterin synthase"
/codon_start=1
/transl_table=11
/product="6-carboxy-5,6,7,8-tetrahydropterin synthase"
/protein_id="YP_005299243.1"
/db_xref="GI:379022582"
/db_xref="GeneID:11860496"
/translation="MIKCTRRIEFDSGHRIIGHQNKCQFLHGHRYVLEITIAANKTDT
LGMVIDFGLIKDLAKKWIDKNFDHSLILHQDDKEMGQQIENCTGQKIYYMRNNPTAEN
IAIHLKNEIFPKLFINQQFSVTSLKLFETPNCFVEV"
misc_feature 216498..216905
/locus_tag="RCA_00920"
/note="6-pyruvoyl tetrahydropterin synthase; Region: PTPS;
pfam01242"
/db_xref="CDD:201680"
misc_feature order(216570..216572,216576..216578,216879..216881,
216897..216899)
/locus_tag="RCA_00920"
/note="active site"
/db_xref="CDD:29764"
gene 216911..217375
/locus_tag="RCA_00925"
/db_xref="GeneID:11860497"
CDS 216911..217375
/locus_tag="RCA_00925"
/note="COG1324 Uncharacterized protein involved in
tolerance to divalent cations"
/codon_start=1
/transl_table=11
/product="divalent cation tolerance protein"
/protein_id="YP_005299244.1"
/db_xref="GI:379022583"
/db_xref="GeneID:11860497"
/translation="MHLDEMKMGYMQITLDKGKESVSRGTEHTKVREHPRTYKDDIVN
FSSSSSIQDYCLTLTTTNDLQIAEKIASVLLELNLAACIQIDNVKSYFRWDSRVTLET
EYRLIIKAKSSNYNKIENKILEIHNYELPQIIKINIDYGFQKYLKWIDQNSK"
misc_feature 216926..217054
/locus_tag="RCA_00925"
/note="Rickettsial palindromic element RPE5 domain;
Region: RPE5; TIGR03776"
/db_xref="CDD:163488"
misc_feature 217064..217372
/locus_tag="RCA_00925"
/note="Uncharacterized protein involved in tolerance to
divalent cations [Inorganic ion transport and metabolism];
Region: CutA; COG1324"
/db_xref="CDD:31515"
gene 217416..218615
/locus_tag="RCA_00930"
/db_xref="GeneID:11860498"
CDS 217416..218615
/locus_tag="RCA_00930"
/note="COG1301 Na+/H+-dicarboxylate symporters"
/codon_start=1
/transl_table=11
/product="proton/sodium-glutamate symport protein"
/protein_id="YP_005299245.1"
/db_xref="GI:379022584"
/db_xref="GeneID:11860498"
/translation="MKLWQKVTLGLILGIIFGIYLPQYVNYIKPIGDIFLRLIKMIIT
PLIFFSLVSGITSMNDTSALGRVGMKAVAAFLGTTFFATVFGLTVALVLKPGVGIHID
FASSETTSRTSFNIIDFFVNIVPDNAVGAFAKGDVLQVVFFAIFVGITLNKMKSINEP
ITDLIHVMSKLILKMISFVIQLSPYGAFALTGWIVGMQGVEVMISLSKLVVAVVVAMT
FQYLVFGLLIYLFCRVSPIPFYKKSFEYQMLAFATSSSKATLATTMQVCREKLGISES
STAFVLPIGASINMDGFAINLSLTTIFFAQMMGVTLTPHDYLVIIITSTLGSIGGAGI
PGASLIMLPMVLSSVHLPIEGVAIIAGIDRILDMLRTTINITGDATITMIIDNSENTL
DKEVYLS"
misc_feature 217479..218612
/locus_tag="RCA_00930"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature 217479..218579
/locus_tag="RCA_00930"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
pfam00375"
/db_xref="CDD:201189"
gene complement(219428..219571)
/locus_tag="RCA_00935"
/db_xref="GeneID:11860499"
CDS complement(219428..219571)
/locus_tag="RCA_00935"
/codon_start=1
/transl_table=11
/product="ankyrin repeat-containing protein"
/protein_id="YP_005299246.1"
/db_xref="GI:379022585"
/db_xref="GeneID:11860499"
/translation="MIGGWPPLDYAISNNNIEIADFVLQSGASMNLIHINIGFMKPGI
AAF"
misc_feature complement(219476..219562)
/locus_tag="RCA_00935"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cl02529"
/db_xref="CDD:207631"
gene complement(219819..220979)
/locus_tag="RCA_00940"
/db_xref="GeneID:11860500"
CDS complement(219819..220979)
/locus_tag="RCA_00940"
/note="COG0635 Coproporphyrinogen III oxidase and related
Fe-S oxidoreductases"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_005299247.1"
/db_xref="GI:379022586"
/db_xref="GeneID:11860500"
/translation="MKVTTDDLSIYIHWPFCLSKCPYCDFNSHVASTIDHEQWLKSYE
REIEYFKPIIQNKYIKSIFFGGGTPSLMDPVIVEVIINKIINIAIIDHQTEITLETNP
TSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIETANTIFPRVS
FDLIYARSGQKLKDWQEELKQAMQLATSHISLYQLTIEKGTLFYKLFRDGTLILPHSD
EAAEMYEWTNHYLESKKYFRYEISNYALVSQECLHNLTYWNYNSYLGIGPGAHSRIIE
PSSSVLAIMMWHKPEKWLDSVKIKNVGIQTNIKLTHQEVIAEMLMMGLRLKSGINLSI
LEQKLNTKLENILDMNNLKHYQNQDLIKLDQNVYLTDKGLMLHSYIVPRLIK"
misc_feature complement(219822..220979)
/locus_tag="RCA_00940"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK06582"
/db_xref="CDD:180630"
misc_feature complement(220359..220931)
/locus_tag="RCA_00940"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(220395..220400,220488..220490,
220608..220610,220677..220685,220776..220781,
220785..220787,220905..220913,220917..220919,
220923..220925,220929..220931))
/locus_tag="RCA_00940"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature complement(219855..220052)
/locus_tag="RCA_00940"
/note="HemN C-terminal domain; Region: HemN_C; pfam06969"
/db_xref="CDD:203555"
gene complement(221858..223207)
/locus_tag="RCA_00945"
/db_xref="GeneID:11860501"
CDS complement(221858..223207)
/locus_tag="RCA_00945"
/note="COG0541 Signal recognition particle GTPase"
/codon_start=1
/transl_table=11
/product="signal recognition particle protein"
/protein_id="YP_005299248.1"
/db_xref="GI:379022587"
/db_xref="GeneID:11860501"
/translation="MFKTLTQNLTKAFDQLVGSGILTEAQIDATMRDIRVALLESDVA
LPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLAASESETKLNLNSKPP
VNFLMVGLQGSGKTTASGKLALRLKNHNKKVLLVSLDTYRPAAQEQLAILANLVQINS
LPIVQGEKPLDIVKRAIAEAKLSAYDVVIYDTAGRTQIDKEMMEEALSIKKIVEPTET
LLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDGDSKGGAALSIKYITKKPIKFLSN
GEKLTDLEEFDAKRLASRILDMGDIISFIEKASGLVNREEAEKTAAKLKKGKFDLNDY
MQQIRSIKKMGGFGSILSMLPGSGKIMDQIDQSKLNSKIIEHQEAIILSMTPKERKNP
DIINASRRKRIALGAGTTVQKVNILLKQYKQISDMMKKASKVNPKNLLRSGLGKVFS"
misc_feature complement(221909..223207)
/locus_tag="RCA_00945"
/note="signal recognition particle protein; Provisional;
Region: PRK10867"
/db_xref="CDD:182793"
misc_feature complement(222950..223183)
/locus_tag="RCA_00945"
/note="SRP54-type protein, helical bundle domain; Region:
SRP54_N; smart00963"
/db_xref="CDD:198031"
misc_feature complement(222383..222895)
/locus_tag="RCA_00945"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature complement(222860..222883)
/locus_tag="RCA_00945"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature complement(order(222449..222454,222461..222463,
222626..222628,222791..222793))
/locus_tag="RCA_00945"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
misc_feature complement(221924..222223)
/locus_tag="RCA_00945"
/note="Signal peptide binding domain; Region: SRP_SPB;
pfam02978"
/db_xref="CDD:202493"
gene complement(223436..224230)
/locus_tag="RCA_00950"
/db_xref="GeneID:11860502"
CDS complement(223436..224230)
/locus_tag="RCA_00950"
/EC_number="2.7.7.7"
/note="COG0470 ATPase involved in DNA replication"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_005299249.1"
/db_xref="GI:379022588"
/db_xref="GeneID:11860502"
/translation="MIIERLEFNLKYNKLYNSWLIEAENIEQALKDVEDFIYVKLFKN
NIPLENNPDYHFIARETSSISNVKNISIEQIRKLQDFLNKTSAVSGYKVAVIYSADLM
NLNAANSCLKILEDVPKNSYIFLITSRAASIIATIRSRCFKINMRSSIHNTQNPLYSE
FIQPIADDKTLDFINRFTTKDRELWLDFIDNILLLMNRILKKSANVNIELLDLENKIF
NKLSNQHPSYLLQKFTDIKKLIYNTIDYDLDLKASYILVVNEFSSN"
misc_feature complement(223439..224227)
/locus_tag="RCA_00950"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK06581"
/db_xref="CDD:180629"
gene complement(224528..224860)
/locus_tag="RCA_00955"
/db_xref="GeneID:11860503"
CDS complement(224528..224860)
/locus_tag="RCA_00955"
/note="COG0776 Bacterial nucleoid DNA-binding protein"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU"
/protein_id="YP_005299250.1"
/db_xref="GI:379022589"
/db_xref="GeneID:11860503"
/translation="MSAHNKHESKKMNKTEFIAFMTNHGRNHKHASYKSLTKADAEKA
LNLVLDSVINAIKSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAG
RKMKEACN"
misc_feature complement(224537..224824)
/locus_tag="RCA_00955"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature complement(order(224537..224539,224558..224560,
224564..224566,224576..224581,224645..224647,
224660..224665,224672..224686,224696..224701,
224708..224713,224720..224722,224762..224764,
224801..224803,224810..224812,224819..224824))
/locus_tag="RCA_00955"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature complement(order(224552..224554,224561..224563,
224567..224569,224579..224581,224609..224620,
224627..224629,224633..224638,224642..224644,
224654..224656,224663..224668,224672..224674,
224678..224680,224723..224725,224816..224824))
/locus_tag="RCA_00955"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 225373..228399
/locus_tag="RCA_00960"
/db_xref="GeneID:11860504"
CDS 225373..228399
/locus_tag="RCA_00960"
/note="COG0841 Cation/multidrug efflux pump"
/codon_start=1
/transl_table=11
/product="hydrophobe/amphiphile efflux-1 HAE1 family
protein"
/protein_id="YP_005299251.1"
/db_xref="GI:379022590"
/db_xref="GeneID:11860504"
/translation="MLLSEICIKRPVFTTVLSLVIVALGGFFVTKLQIRGTPDISVPI
INVNAYYAGADALYMEKEITTRIEKALKTVKNLDYITSQSSTGKSSITLSFLLSTDIE
VALNDVRSKISDITYMFPHDMKTPSVAKLDTNSFPSLIISIESDQYSDLELTKIVKDS
LQTPLDKLTSVGQSQIYGGREYIMRIEPDSKKLYQYKISLLEIESAIKEQNKDYPAGT
IKTRSNNFIVTLQGSLSTPEEFGNIILKVQNRSIIKLRDIAKISLTSPDKDIIFRYNG
KSSIALGLIKESKANVIDLSNEVTKELERIKKLMPKGISMGVIYDEATPIKESIYAVF
QTIVEALILVVLVIYLFLASAKMTLILFVTIPISLIGTFSVMYAFGFSINIFTLLAMI
LAIGIVVDDAIVMLENIFRYNEMGHKPMAAAMLASKEIGFAIIAMTITLAAVFLPVGF
IDGFIGKLFIEFAWTLACCVLFSGFVALTLTPMMSSRMVTKHSKDLPKFLVKFNDILQ
FIQNKYIYYLNLTFENKKKFVIIIASSFIVLIISFKFTQKVFIPQEDDGFLQLSLKGP
EGSSLESSTKVVTEAEKILANYKDILGYLMIIGAGGSDNVFGFIPLKDWSDRSRSQET
IKNILNKQFSEIPGMSIFAMAPRSMVSGNATSPIEFTIQTSLEYDDLDKISQQFIDIM
KTNPIFLNVNRNLQSTIPTLSIDVKRDKAYLYGMDLANIGKTVQYLLAGQQMGDFRIG
NDLYNVILQFNPKDRKDISAFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSK
SVTISSDLTPDGKINDAIDEINKIAAKLLDPSNTIIEYIGEIKQMREANSNMLITFVF
ALVFIYLVLAAQFESFTDPLLILLAVPFSITGGVLTLWLAGNSLNMYSNIGLITLIGL
ITKNSIMIVEFANQLREKGVKVRTAIIESSKLRLRPILMTNLAAVVGALPLVFADGTG
AAARNSIGFVIVGGLSFGTIFTIFVIPVIYQTFKKD"
misc_feature 225379..228393
/locus_tag="RCA_00960"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
misc_feature 226444..>226800
/locus_tag="RCA_00960"
/note="MBOAT, membrane-bound O-acyltransferase family;
Region: MBOAT; cl00738"
/db_xref="CDD:207183"
gene 228486..228695
/locus_tag="RCA_00965"
/db_xref="GeneID:11860505"
CDS 228486..228695
/locus_tag="RCA_00965"
/note="COG2155 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299252.1"
/db_xref="GI:379022591"
/db_xref="GeneID:11860505"
/translation="MLINTSNNLLITTIHLLSSIGAINWGLVGLCNFNLVTLLFGSFP
IIVTILYIIIGFCGVYSFLYLGKLF"
misc_feature <228546..228692
/locus_tag="RCA_00965"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2155"
/db_xref="CDD:32338"
gene complement(228808..229581)
/locus_tag="RCA_00970"
/db_xref="GeneID:11860506"
CDS complement(228808..229581)
/locus_tag="RCA_00970"
/note="COG1385 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="16S ribosomal RNA methyltransferase RsmE"
/protein_id="YP_005299253.1"
/db_xref="GI:379022592"
/db_xref="GeneID:11860506"
/translation="MKYNRIYINSHLAENSKLELANDHIHYIKRVLRLKVNDGLRIFN
GTDGEFLAQITDIGKNNLSVKLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLG
ITKIIPLITKRCQFRSVNIKRLTKCMIEATEQSERLIPPIIEQAIKLQDYLKKNNNLM
LYANEYEKEENSILQITSLLNNSDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNI
LRAETAAITAIAQVALTISFLRRWKSEKKYNNTSSIYAF"
misc_feature complement(228853..229572)
/locus_tag="RCA_00970"
/note="16S ribosomal RNA methyltransferase RsmE;
Provisional; Region: PRK11713"
/db_xref="CDD:183286"
misc_feature complement(228886..229530)
/locus_tag="RCA_00970"
/note="RNA methyltransferase; Region: Methyltrans_RNA;
pfam04452"
/db_xref="CDD:203020"
gene complement(230062..230223)
/locus_tag="RCA_00975"
/db_xref="GeneID:11860507"
CDS complement(230062..230223)
/locus_tag="RCA_00975"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299254.1"
/db_xref="GI:379022593"
/db_xref="GeneID:11860507"
/translation="MKFKIPIEVDIKSLTDEETALDSLNANILNALTEVNDSLIQDSI
NYVILIHWQ"
gene complement(230355..230546)
/locus_tag="RCA_00980"
/db_xref="GeneID:11860508"
CDS complement(230355..230546)
/locus_tag="RCA_00980"
/codon_start=1
/transl_table=11
/product="bifunctional penicillin-binding protein 1C"
/protein_id="YP_005299255.1"
/db_xref="GI:379022594"
/db_xref="GeneID:11860508"
/translation="MWETTLILFDAHKYLFTKCLAAHPQDIMYNQLISLPIKFNQKNL
MQSTIIKLIISFGLRVMHE"
gene complement(232765..233211)
/locus_tag="RCA_00985"
/db_xref="GeneID:11860509"
CDS complement(232765..233211)
/locus_tag="RCA_00985"
/note="COG0589 Universal stress protein UspA and related
nucleotide-binding proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299256.1"
/db_xref="GI:379022595"
/db_xref="GeneID:11860509"
/translation="MSENIRFKNILIPIDLNDKKSIKGILSKALMLATSFQAKLYFMY
VIPEFGTKLFEDYLPKNWRTEKKEKYQAQIKGLIKQYIPDEIATDYYIGSGAVYDEII
KHSNEIKADLIIISAVRLQLKDYMLGPNASKIVRHSDISVLVVRDQ"
misc_feature complement(232777..233187)
/locus_tag="RCA_00985"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(232819..232830,232855..232860,
232864..232869,233077..233079,233167..233175))
/locus_tag="RCA_00985"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene complement(233221..234171)
/locus_tag="RCA_00990"
/db_xref="GeneID:11860510"
CDS complement(233221..234171)
/locus_tag="RCA_00990"
/note="COG2358 TRAP-type uncharacterized transport system,
periplasmic component"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299257.1"
/db_xref="GI:379022596"
/db_xref="GeneID:11860510"
/translation="MNSLKLGLYTTIVSILLIYSNIYAAPKVIKIGTGSILKGYYAIG
LDLCKTITNDNKNNEHIKCEVVATNGSIENLKLLQQGKIDLALVQANIALEAYEGIGY
YHDQEKMQNLRQVLNLHDEFFTVIVKDEDKIKVFADIDGKKITNGPAFSGSNITYDTV
RSLYKFSKAPEELQINYEDSIDKFCNKEIDAIIMIVGHSNPLVNLIANKCKVDFISIE
NDKIAKLVKQNRAFHKTILHKGLYPAIANDQTTIKLSAILVTRDDANRDILDKFIGAF
HRNVANFKLSNYLLNNFDINYFADTKNFVLPKHDAVRNKN"
misc_feature complement(233320..234156)
/locus_tag="RCA_00990"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
misc_feature complement(233224..234105)
/locus_tag="RCA_00990"
/note="TRAP-type uncharacterized transport system,
periplasmic component [General function prediction only];
Region: Imp; COG2358"
/db_xref="CDD:32505"
gene complement(234176..235246)
/locus_tag="RCA_00995"
/db_xref="GeneID:11860511"
CDS complement(234176..235246)
/locus_tag="RCA_00995"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299258.1"
/db_xref="GI:379022597"
/db_xref="GeneID:11860511"
/translation="MIRKILLFVFLAFTIIWFAIAYTIKNNVVSLIKNSESDNLKIYY
NVVKFSGYPFNWKITVTDPKVKLIDHVNSKEFTSENIVLNIAFSTKRATLNFGPFIRE
VANYGDKTFTYDIRSDDDIKSIGKFNKPLYKISKDDNLKEIFKSIQLNNKALSIFKDN
YEIFKINNLAFLIRKQNLASEENISLSLNMNYDSTKDILHFKNANLDIAISLKFAEDR
ENSAILQNFNIERLIFTCDNDSKVTVNGALQFFANKLPEGKLYFELENYNSIVDKLLP
NNIIFSKKIIKTIIAKAINKASDTDLNIDQNDTNWAYNNMDKAKFNIQFSDKGINIGS
INLLELKLGEHEEEQNTANNLN"
gene complement(235259..235597)
/locus_tag="RCA_01000"
/db_xref="GeneID:11860512"
CDS complement(235259..235597)
/locus_tag="RCA_01000"
/note="COG0633 Ferredoxin"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit delta'"
/protein_id="YP_005299259.1"
/db_xref="GI:379022598"
/db_xref="GeneID:11860512"
/translation="MSGKIKVTFIINDGEEKTVEAPIGLSILEIAHSNDIDLEGACEG
SLACATCHVILEEEFYNKFKKPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVR
LPSATRNIKL"
misc_feature complement(235310..235579)
/locus_tag="RCA_01000"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(235334..235339,235445..235456,
235463..235465,235472..235474,235481..235486))
/locus_tag="RCA_01000"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(235334..235336,235445..235447,
235454..235456,235472..235474))
/locus_tag="RCA_01000"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(235658..237595)
/gene="hscA"
/locus_tag="RCA_01005"
/db_xref="GeneID:11860513"
CDS complement(235658..237595)
/gene="hscA"
/locus_tag="RCA_01005"
/note="COG0443 Molecular chaperone"
/codon_start=1
/transl_table=11
/product="chaperone protein HscA"
/protein_id="YP_005299260.1"
/db_xref="GI:379022599"
/db_xref="GeneID:11860513"
/translation="MQIIEIKEPEQADFKQERQIAVGIDFGTTNSLIAVSTNRKVKVI
KTIDDKELIPTTIEFTDGNFTIGNNNGLRSIKRLFGKTLKEILNTPILFSLVKDYLDI
NSDKPKLNFANKRMRIPEIAAEVFIYLKNQAEKQLKTNITKAVITVPAHFNDAARGEV
ILAAKIAGLEVLRLIAEPTAAAYAYGLNKNRLTRKLPYREEFVGNMLQHSTATYKAVR
EDPSSGLTHKLPLEVELPEESNQNGYYLVYDLGGGTFDVSILNIQEGIFQVIATNGDN
MLGGDDIDVVITQYLCNKFDLPDSIDTLQLTKKVKETLTYEDNFNNDNISLNKQTLEL
LILPLIERTINIAKECLEQAGNPNIDGVILVGGATRISLIKNELYKAFKVDILSDIDP
DKAVVWGAALQAENLITPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKE
FTTYADNQTGIQFHILQGEREMAVDCRSLARFELKGLPPMKAGDIRVEVTFAIDADGI
LSVSAYEKISHTSHTIEVKPNHGIDKTEIDIMLEKAYKNAKIDYTTRLLQEAVINAEA
LIFNIERAISKLTTLLSESEISIINSLLDNIKEAARTRDPILINNSIKDFKSKIQKSI
DTKFNIIINDLLKGKNINHIQ"
misc_feature complement(235661..237595)
/gene="hscA"
/locus_tag="RCA_01005"
/note="chaperone protein HscA; Provisional; Region: hscA;
PRK01433"
/db_xref="CDD:167230"
misc_feature complement(236381..237538)
/gene="hscA"
/locus_tag="RCA_01005"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
misc_feature complement(order(236498..236500,236840..236851,
237065..237067,237500..237502,237506..237508,
237512..237523))
/gene="hscA"
/locus_tag="RCA_01005"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene complement(237586..238086)
/gene="hscB"
/locus_tag="RCA_01010"
/db_xref="GeneID:11860514"
CDS complement(237586..238086)
/gene="hscB"
/locus_tag="RCA_01010"
/note="COG1076 DnaJ-domain-containing proteins 1"
/codon_start=1
/transl_table=11
/product="co-chaperone HscB"
/protein_id="YP_005299261.1"
/db_xref="GI:379022600"
/db_xref="GeneID:11860514"
/translation="MQNYFQLLGLQQDYNIDLKILEKQYFAMQVKYHPDKAKTLQEKE
QNLIIAAELNKAYSTLKDALKRAEYMLLLQNINLNDQKARTLLSSLELSIFWDEMEII
ENTTIRSDLEKIKDKYELMEKHEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQK
KIKSCK"
misc_feature complement(237589..238086)
/gene="hscB"
/locus_tag="RCA_01010"
/note="co-chaperone HscB; Provisional; Region: hscB;
PRK01356"
/db_xref="CDD:167217"
misc_feature complement(237901..238080)
/gene="hscB"
/locus_tag="RCA_01010"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature complement(order(237922..237927,237934..237939,
237955..237957,237982..237990))
/gene="hscB"
/locus_tag="RCA_01010"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene 238358..238948
/gene="rnhB"
/locus_tag="RCA_01015"
/db_xref="GeneID:11860515"
CDS 238358..238948
/gene="rnhB"
/locus_tag="RCA_01015"
/EC_number="3.1.26.4"
/note="COG0164 Ribonuclease HII"
/codon_start=1
/transl_table=11
/product="ribonuclease HII"
/protein_id="YP_005299262.1"
/db_xref="GI:379022601"
/db_xref="GeneID:11860515"
/translation="MEIDLLQYEKKYQEYIVAGIDEAGRGPLAGPVVASAVVIDNTNI
ITGIKDSKKLSKRKRELLYEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANL
TIKPEIVLVDGNMQFNDKRFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQY
LWYKNSGYGTKEHIQAINTHGLSPYHRKSFRYSCFI"
misc_feature 238409..238930
/gene="rnhB"
/locus_tag="RCA_01015"
/note="bacterial Ribonuclease HII-like; Region:
RNase_HII_bacteria_HII_like; cd07182"
/db_xref="CDD:187695"
misc_feature order(238418..238429,238616..238624,238631..238633,
238691..238693,238727..238729,238784..238786)
/gene="rnhB"
/locus_tag="RCA_01015"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187695"
misc_feature order(238418..238423,238691..238693,238742..238744)
/gene="rnhB"
/locus_tag="RCA_01015"
/note="active site"
/db_xref="CDD:187695"
gene complement(239085..241070)
/locus_tag="RCA_01020"
/db_xref="GeneID:11860516"
CDS complement(239085..241070)
/locus_tag="RCA_01020"
/note="COG0556 Helicase subunit of the DNA excision repair
complex"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_005299263.1"
/db_xref="GI:379022602"
/db_xref="GeneID:11860516"
/translation="MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGK
TFTMANIIARMNRPTLIMAHNKTLAAQIYSEMKLMFPKNAIEYFVSYYDYYQPEAYIA
RTDTFIEKDSSINEQIDLMRHSATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNL
ESGKSYPRDKLLSDLVNLQYERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFVGN
ELKYIHEFDPLTGTKLAKLDKAMVFGNSHFVIPQETVNKAISGIEVELQKRLELLKSQ
NKLLETQRLNQRTQYDLEMLATTGSCKGIENYSRFLTGRNAGEPPPTLFEYLPKDALL
FVDESHVSVPQIRAMYNGDRARKKVLVEHGFRLPSALDNRPLKFEEWEKFRPQTIFVS
ATPGPFELEETGGLVVELIIRPTGLLDPECIIKPATNQVEDLISEIQTTIAKGLRVLV
TTLTKKMAEDLTTYLQELKYKSSYLHSNVHTLERLEILRDLRQGTINILVGINLLREG
LDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARNSEGRVILYADKITKSIDKAVSE
TMRRRQIQQEYNEKHGIIPQTINRTIYALTALKKIDSKLDKKQAHILFDNPAKLKAHI
YKLKKAMLKAASNLEFEQAIKLRDQLKNLEEAALELS"
misc_feature complement(239088..241070)
/locus_tag="RCA_01020"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature complement(<240756..240977)
/locus_tag="RCA_01020"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(240936..240950)
/locus_tag="RCA_01020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(239415..239810)
/locus_tag="RCA_01020"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(239559..239567,239640..239645,
239703..239714))
/locus_tag="RCA_01020"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(239442..239444,239451..239453,
239463..239465,239541..239543))
/locus_tag="RCA_01020"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(239295..239420)
/locus_tag="RCA_01020"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature complement(239106..239195)
/locus_tag="RCA_01020"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 241141..241452
/locus_tag="RCA_01025"
/db_xref="GeneID:11860517"
CDS 241141..241452
/locus_tag="RCA_01025"
/note="COG0695 Glutaredoxin and related proteins"
/codon_start=1
/transl_table=11
/product="glutaredoxin 3"
/protein_id="YP_005299264.1"
/db_xref="GI:379022603"
/db_xref="GeneID:11860517"
/translation="MNKTILHTIIIYTLASCPYCIKAKALLDKKEVVYEEIEVSNFTQ
EEKEKLIKKAGGSRTVPQIFINNIHIGGNDDLQKLNEEGRLDKLLEEQPKKTPPAAAS
V"
misc_feature 241162..241389
/locus_tag="RCA_01025"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(241180..241182,241189..241197,241306..241308,
241315..241320)
/locus_tag="RCA_01025"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(241189..241191,241198..241200)
/locus_tag="RCA_01025"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 241827..243632
/locus_tag="RCA_01030"
/db_xref="GeneID:11860518"
CDS 241827..243632
/locus_tag="RCA_01030"
/note="COG5265 ABC-type transport system involved in Fe-S
cluster assembly, permease and ATPase components"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein Atm1"
/protein_id="YP_005299265.1"
/db_xref="GI:379022604"
/db_xref="GeneID:11860518"
/translation="MTKPYKFTQASIAMFKNNNNKNSFYLLLPYLWSKNFDIRLRIVV
SLICLVIAKIINIFVPIVYKYIIDGLNKNFALSVIIGIIFLYGGAKILVQIFSELRNI
IFSKVGHQATRLVALNVFKHMHNLSIRFHVTRKTGVLSRSIERGTKGIEAVLRYSLFS
IFPTSVEIVLVSGMLWYVYGIWFAVTILITMIGYGGYTFLISIWRISFVREMNQSDNN
ANNRVIDSLLNFETIKYFGNEEYEAVKFHEALQTYERSSTKTTNSLSILNIGQDVIIS
LGLVSLMILSVNAINQNKMTIGDLIMVNTYLFQLSIPLSILGFAYREIKNALVSMEDM
FKLLNIPAEVQDAVNAKELIILKGEVTFDNVSFAYNQERPILHNISFTIGRGKTLAVV
GSSGAGKSTISRLLFRFYDISSGSIAIDDQDIREVTQQSLRKCIGIVPQDMVLFNGTI
YYNIAYGNNAVSFDEVIAASKHAHIHDFISMLPEGYDTQVGERGLKLSGGEKQRIAIA
RIIIKNPAIYVFDEATSSLDTKTEKLIQLSLKEVLTHHATLIIAHRLSTIIDADEIIV
LDSGYIIEQGNHKSLLQHKGYYAELWYKQQEENNS"
misc_feature 241950..242768
/locus_tag="RCA_01030"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 242121..243608
/locus_tag="RCA_01030"
/note="ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones]; Region: ATM1; COG5265"
/db_xref="CDD:34862"
misc_feature 242904..243611
/locus_tag="RCA_01030"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 243003..243026
/locus_tag="RCA_01030"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(243012..243017,243021..243029,243147..243149,
243387..243392,243483..243485)
/locus_tag="RCA_01030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 243138..243149
/locus_tag="RCA_01030"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 243315..243344
/locus_tag="RCA_01030"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 243375..243392
/locus_tag="RCA_01030"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 243399..243410
/locus_tag="RCA_01030"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 243471..243491
/locus_tag="RCA_01030"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 243701..243802
/locus_tag="RCA_01035"
/db_xref="GeneID:11860519"
CDS 243701..243802
/locus_tag="RCA_01035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299266.1"
/db_xref="GI:379022605"
/db_xref="GeneID:11860519"
/translation="MMRQNIRNNADIETTTVNQNLIAVSVVDTIIVG"
gene complement(245590..248208)
/locus_tag="RCA_01040"
/db_xref="GeneID:11860520"
CDS complement(245590..248208)
/locus_tag="RCA_01040"
/note="COG1074 ATP-dependent exoDNAse (exonuclease V) beta
subunit (contains helicase and exonuclease domains)"
/codon_start=1
/transl_table=11
/product="ATP-dependent helicase"
/protein_id="YP_005299267.1"
/db_xref="GI:379022606"
/db_xref="GeneID:11860520"
/translation="MSNLQQEASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPA
NILCLTFTNAAAVEMQARINSKLKYLSLCNVEKLEEELFLMLGNKPLQQELENAKTLY
DKILNSNEPLNIYTIHAFCQKILKTCPLEAGITPEFKILEETKLQDIFLNIRNEIYLS
DEHNDLMKILLNRFHEITLQDIFSEIIEQKIKFKKLFTHKTIPGEIQNKRLALGELNN
IYDNVKNLFVKYDLEIEPKDFFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYH
LDELRRIEELEYHTNLLTKLAYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKATHE
WLLHKLESKINHILVDEAQDTTPTQWNIITTLITEFNAMDKPNNSIFIVGDDKQSIFS
FQGADLRNFSLVNEQLKANLTKANKKFKNITLEYSYRSCAEILQFTHYVLQNIKSDYP
NLFFPDNPLISSFRTHQGTVTVWPLVTSEKQEELFWALPEDYKNSKSAADLLIEQIVN
FIKEKIESKEILPSICAMKSGYTKINLENSKEFVSQGAECILNVQCPSHSDYKNDSAN
FSNSSRISEKDFMILVRKRDEFSNNLIKELSKAKLKIEISDRINLKDHLSIMDLMSVA
KFVLLPDDDLNLACLLKSPIIGINEQQLYELLINKKDQSLWDTLSLYLDIYEKLNSFI
EIYKTSTAENFFTIVVNSLNLRELLNVYNGDDSDDMINELLTLSSNYANDIDNSLQGF
VAWFENNNIYIKRNMEHSDKIRVMTVHGSKGLEAPIVILCDSTSLPVSSNKFIWNDNG
EMFFSANAADTPQFLQELKEAEKLKDLQEYIRLLYVAMTRAKDHLIICGFSNKATTSE
NSWYKIAKQTFDKFFN"
misc_feature complement(<245608..248196)
/locus_tag="RCA_01040"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature complement(<248017..248160)
/locus_tag="RCA_01040"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(246499..246633)
/locus_tag="RCA_01040"
/note="Rickettsial palindromic element RPE5 domain;
Region: RPE5; TIGR03776"
/db_xref="CDD:163488"
misc_feature complement(245671..246123)
/locus_tag="RCA_01040"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene complement(248386..249087)
/locus_tag="RCA_01045"
/db_xref="GeneID:11860521"
CDS complement(248386..249087)
/locus_tag="RCA_01045"
/note="COG3346 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit B"
/protein_id="YP_005299268.1"
/db_xref="GI:379022607"
/db_xref="GeneID:11860521"
/translation="MTNKINLTNFFVLITFITLISLGFWQISRLKEKKLFLASMQANL
TSPAINLEELGSNFIYRKVKITGQFLLNKDIYLYGRRSMSSEKDGYYLVTPFKTLEEQ
IILVARGWFSNRNKNIITQAANNQKHEIIGVTMPSEKTRSYLPANDIKNNVWLTLDLK
AASKALGLNLENFYIIEEGKNISNLDILLPLSINHVKAIRNDHLEYALTWFGLAISLI
VIYVIYKRHYKIHNF"
misc_feature complement(248428..249033)
/locus_tag="RCA_01045"
/note="SURF1 superfamily. Surf1/Shy1 has been implicated
in the posttranslational steps of the biogenesis of the
mitochondrially-encoded Cox1 subunit of cytochrome c
oxidase (complex IV). Cytochrome c oxidase (complex IV),
the terminal electron-transferring...; Region: SURF1;
cd06662"
/db_xref="CDD:119401"
gene complement(249284..249973)
/locus_tag="RCA_01050"
/db_xref="GeneID:11860522"
CDS complement(249284..249973)
/locus_tag="RCA_01050"
/note="COG0847 DNA polymerase III, epsilon subunit and
related 3'-5' exonucleases"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_005299269.1"
/db_xref="GI:379022608"
/db_xref="GeneID:11860522"
/translation="MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHF
YINPERDMPFEAYRIHGLSDEFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLN
HELSLLKRAEIKLLELANTIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALK
DAALLAEVYVALTGGRQSTFKIVDRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKH
KDFINKILTPA"
misc_feature complement(249296..249961)
/locus_tag="RCA_01050"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature complement(249455..249958)
/locus_tag="RCA_01050"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature complement(order(249491..249493,249506..249508,
249515..249517,249557..249562,249683..249691,
249695..249700,249794..249799,249806..249811,
249926..249931,249935..249946))
/locus_tag="RCA_01050"
/note="active site"
/db_xref="CDD:99835"
misc_feature complement(order(249491..249493,249506..249508,
249515..249517,249557..249562,249686..249691,
249695..249700,249794..249799,249806..249811,
249926..249931,249935..249946))
/locus_tag="RCA_01050"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature complement(order(249491..249493,249506..249508,
249683..249685,249938..249940,249944..249946))
/locus_tag="RCA_01050"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene complement(249961..250536)
/gene="coaE"
/locus_tag="RCA_01055"
/db_xref="GeneID:11860523"
CDS complement(249961..250536)
/gene="coaE"
/locus_tag="RCA_01055"
/EC_number="2.7.1.24"
/note="COG0237 Dephospho-CoA kinase"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_005299270.1"
/db_xref="GI:379022609"
/db_xref="GeneID:11860523"
/translation="MLAIGITGNYASGKTFILDYLAEKGYKTFCADRCIKKLYQDLRV
QTQILKLLPELEYFNIRKISNLIYNNDLSREKLQNFIYPLLIDKLILFKKENATSKFG
FAEIPLLYEAKFDQYFDFVVTIYCSEEVRMQRAITRSSFDIAIYNKIKEIQLPQESKI
AKADFSINSGVDMLDLEKQISNLIKKLECQV"
misc_feature complement(249964..250536)
/gene="coaE"
/locus_tag="RCA_01055"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:30586"
misc_feature complement(250012..250527)
/gene="coaE"
/locus_tag="RCA_01055"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:30195"
misc_feature complement(order(250078..250080,250213..250218,
250291..250293,250441..250443,250516..250518))
/gene="coaE"
/locus_tag="RCA_01055"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30195"
misc_feature complement(order(250030..250032,250135..250137,
250495..250500,250507..250515))
/gene="coaE"
/locus_tag="RCA_01055"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:30195"
gene complement(250530..251342)
/locus_tag="RCA_01060"
/db_xref="GeneID:11860524"
CDS complement(250530..251342)
/locus_tag="RCA_01060"
/note="COG3494 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299271.1"
/db_xref="GI:379022610"
/db_xref="GeneID:11860524"
/translation="MLPNLGIISGRGSLPYLIAKNYTMQGGKCYITAIQGETDINQIK
NFEYKVFKIGMVGEAIKYFKENEVQNIIFIGGVNRPNFKNLAVDKIGGLLLFKILGQK
IRGDDSLLKTVADFFESYGFKVISSNKIYKNQQCDSNIITDTHPTSSDKNDIELGIKI
LNHLSPFDIAQSVIIESGYILGIEAAEGTDNLIARCADLRKNPHEGVLVKIPKLGQDT
RLDIPTIGPGTIQNLAKYNYCGIAIKADEMIVVEQELTVKLANEHKIFIAKC"
misc_feature complement(250533..251342)
/locus_tag="RCA_01060"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3494"
/db_xref="CDD:33297"
gene 252093..252572
/locus_tag="RCA_01065"
/db_xref="GeneID:11860525"
CDS 252093..252572
/locus_tag="RCA_01065"
/note="COG3814 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_005299272.1"
/db_xref="GI:379022611"
/db_xref="GeneID:11860525"
/translation="MNNEYKKFVNEYMLEFVKKILTKIQHENLYWDQLIYISYRTDNP
AVILPLKVKQAYPKQITIVLQYQFENLIVNDTGFSLTVSFYGVKEVIYVPFDALISFI
DSNNNYSLTFNQLLNVQEYHQHEKEIRNNKSCKTSLSPNPNVIMLDKFRNSSKPKPH"
misc_feature 252093..252551
/locus_tag="RCA_01065"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3814"
/db_xref="CDD:33607"
gene 252577..253044
/gene="rnhA"
/locus_tag="RCA_01070"
/db_xref="GeneID:11860526"
CDS 252577..253044
/gene="rnhA"
/locus_tag="RCA_01070"
/EC_number="3.1.26.4"
/note="COG0328 Ribonuclease HI"
/codon_start=1
/transl_table=11
/product="ribonuclease H"
/protein_id="YP_005299273.1"
/db_xref="GI:379022612"
/db_xref="GeneID:11860526"
/translation="MNENISKVVIYTDGACAGNPGPGGWGALLQFNDTSKEILGYELD
TTNNRMEITAALEALRILKKSCNVEIYTDSKYLQQGITTWIHNWVKNNWCKSNNEAVK
NADLWQKLYAELSKHTIIWKWVKGHANNSGNIAADKLAAQGRQTAIEILKCRV"
misc_feature 252595..253011
/gene="rnhA"
/locus_tag="RCA_01070"
/note="RNase HI family found mainly in prokaryotes;
Region: RNase_HI_prokaryote_like; cd09278"
/db_xref="CDD:187702"
misc_feature order(252613..252624,252712..252720,252727..252729,
252793..252795,252943..252945,252997..252999)
/gene="rnhA"
/locus_tag="RCA_01070"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187702"
misc_feature order(252613..252615,252727..252729,252793..252795,
252985..252987)
/gene="rnhA"
/locus_tag="RCA_01070"
/note="active site"
/db_xref="CDD:187702"
gene 253032..253475
/locus_tag="RCA_01075"
/db_xref="GeneID:11860527"
CDS 253032..253475
/locus_tag="RCA_01075"
/note="COG3761 NADH:ubiquinone oxidoreductase 17.2 kD
subunit"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299274.1"
/db_xref="GI:379022613"
/db_xref="GeneID:11860527"
/translation="MSCIDKFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYN
NVNEPTKIAPSWHVWLHHLVNEIPKNIQLFPWQDNTHLAKFTYREEFKGDTECSTAAY
INIPEDASTGSMYKLPLEVECAKMSNKIAKKPPKTSYLKYNRWQP"
misc_feature 253032..253472
/locus_tag="RCA_01075"
/note="hypothetical protein; Provisional; Region:
PRK06630"
/db_xref="CDD:168631"
gene 253497..253949
/locus_tag="RCA_01080"
/db_xref="GeneID:11860528"
CDS 253497..253949
/locus_tag="RCA_01080"
/note="COG1463 ABC-type transport system involved in
resistance to organic solvents, periplasmic component"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein"
/protein_id="YP_005299275.1"
/db_xref="GI:379022614"
/db_xref="GeneID:11860528"
/translation="MKQNVIETIIGFVVLIIILLFLIFAYKTGYSITSSKGYQVTANF
QSAEGIAVGSDVMISGIKIGSIKKITLDPNSFYAIVYLNINDDVKIPKDSKAQVVTSG
LFGSKYISIVPGNDDENLAANEEIRYTQSAMNIELLINKIVSSFGSKW"
misc_feature 253596..>253943
/locus_tag="RCA_01080"
/note="ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2C; COG1463"
/db_xref="CDD:31652"
misc_feature 253602..253838
/locus_tag="RCA_01080"
/note="mce related protein; Region: MCE; pfam02470"
/db_xref="CDD:111376"
gene complement(257104..257244)
/locus_tag="RCA_01085"
/db_xref="GeneID:11860529"
CDS complement(257104..257244)
/locus_tag="RCA_01085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299276.1"
/db_xref="GI:379022615"
/db_xref="GeneID:11860529"
/translation="MKNKEKEFLTSALIVDEEEEKLLKAQNAREDLKLILIHLLLFLL
VF"
gene 258757..258942
/locus_tag="RCA_01090"
/db_xref="GeneID:11860530"
CDS 258757..258942
/locus_tag="RCA_01090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299277.1"
/db_xref="GI:379022616"
/db_xref="GeneID:11860530"
/translation="MSKKTKHTNGAIGTVIKDFLPHPKELLLQDDSVKVTIWLSKESV
EFFRLGSYYQLFLSKNG"
gene complement(259003..259094)
/locus_tag="RCA_t05299"
/db_xref="GeneID:11860531"
tRNA complement(259003..259094)
/locus_tag="RCA_t05299"
/product="tRNA-Ser"
/db_xref="GeneID:11860531"
gene complement(259169..259378)
/locus_tag="RCA_01095"
/db_xref="GeneID:11860532"
CDS complement(259169..259378)
/locus_tag="RCA_01095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299278.1"
/db_xref="GI:379022617"
/db_xref="GeneID:11860532"
/translation="MDKYKDDMDSICHITTQLVNICENTTKPKVIEYFIDYLEPWQEL
PIHWYYNTMLPMAKVSSKLLNYDYK"
gene complement(260309..261244)
/locus_tag="RCA_01100"
/db_xref="GeneID:11860533"
CDS complement(260309..261244)
/locus_tag="RCA_01100"
/note="COG0331 (acyl-carrier-protein)
S-malonyltransferase"
/codon_start=1
/transl_table=11
/product="acyl-carrier-protein S-malonyltransferase"
/protein_id="YP_005299279.1"
/db_xref="GI:379022618"
/db_xref="GeneID:11860533"
/translation="MKTAFIFPGQGSQFSGMGRDFYNNFKPAKETFQTIDEALNRKLT
DIIFNSTPEELTLTTNAQPALMAVSMAIINTIKAETGKSLDSLCDYAAGHSLGEYSAL
CAAESISLIDTAKLLHVRSTSMQEACPEGEGSMAACINIPLQKLEQILEDINKINLCQ
IANDNIEGQIVISGKVDAIDYAISIIKDLGYKAIKLKVSAPFHCSLMKLAEHKMQLAL
DKTVINKPIIPVIQNYTAKPTTNPLEIKQNLILQICGRVRWRETLELFNTLEITHIVE
IGAGNVLTNMLRKSNYPFKLSNISELQHFLDNVHK"
misc_feature complement(260321..261244)
/locus_tag="RCA_01100"
/note="(acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism]; Region: FabD; COG0331"
/db_xref="CDD:30679"
misc_feature complement(260378..261244)
/locus_tag="RCA_01100"
/note="malonyl CoA-acyl carrier protein transacylase;
Region: fabD; TIGR00128"
/db_xref="CDD:199994"
gene 261439..261612
/locus_tag="RCA_01105"
/db_xref="GeneID:11860534"
CDS 261439..261612
/locus_tag="RCA_01105"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299280.1"
/db_xref="GI:379022619"
/db_xref="GeneID:11860534"
/translation="MKLGDYFTELEDIACGPYLTAFKKLFSKQLYSGRNKEKETYLDI
YKEVINQIKSDTS"
gene 262955..265639
/locus_tag="RCA_01110"
/db_xref="GeneID:11860535"
CDS 262955..265639
/locus_tag="RCA_01110"
/note="COG0188 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_005299281.1"
/db_xref="GI:379022620"
/db_xref="GeneID:11860535"
/translation="MTDKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKP
VHRRIIYSMYEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLP
LVDGQGNFGSMDGDAAAAMRYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVL
PAMFPNLLVNGSGGIAVGMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDF
PTGSMILGISGIRSAYLTGRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEK
IAEMVKEKRIEGISDLRDESNKNGVRIFIELKKDVEAEVVLNQIYACTQLQTSFSVIM
LALKDGLPKVMNLKEVIAAFVSFREVVITNRTVYLLNKARDKAHILLGLTIAVSNIDE
IIRIIKASNDPNTAKQEVMARKWNALNILPLVKLVDDKAMLNEHGKCSFTEVQAKAVL
EMRLQRLTAMEKNKLEEDLKTLATEISEYLNILGSRERLLKILKEELIKVKEEFATPR
LTSIEFGEFDQDIEDLIQREKMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDE
DMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKGRPMVNILPLKENEHITN
IMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPC
KEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGDDSVISMTVLKGISSTK
EDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDSILEMANSEEFILTVTENGFGKR
SSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNNGKLIRCKLESVR
ITGRNTSGVILFKLDDGEKVVSVSLIADTSASEEDNEL"
misc_feature 262973..265609
/locus_tag="RCA_01110"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 263045..264418
/locus_tag="RCA_01110"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(263045..263128,263141..263290,263294..263350,
263354..263425,263432..263434)
/locus_tag="RCA_01110"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 263321..263323
/locus_tag="RCA_01110"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(264116..264124,264131..264142,264173..264178,
264293..264343)
/locus_tag="RCA_01110"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 264869..265003
/locus_tag="RCA_01110"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265010..265156
/locus_tag="RCA_01110"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265307..265453
/locus_tag="RCA_01110"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 265460..265600
/locus_tag="RCA_01110"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 265930..266103
/locus_tag="RCA_01115"
/db_xref="GeneID:11860536"
CDS 265930..266103
/locus_tag="RCA_01115"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299282.1"
/db_xref="GI:379022621"
/db_xref="GeneID:11860536"
/translation="MIWLLIVISLTLTVLVIGVVLMAVGGKFDKKFSSKLMTLRVFFQ
AVAIFLLIIIYFL"
gene complement(266334..266480)
/locus_tag="RCA_01120"
/db_xref="GeneID:11860537"
CDS complement(266334..266480)
/locus_tag="RCA_01120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299283.1"
/db_xref="GI:379022622"
/db_xref="GeneID:11860537"
/translation="MHLGDIEEVTAQLEEYSSDQYNEKISLSKLEKLIRDLKDFEDEE
QKVK"
misc_feature complement(<266340..266480)
/locus_tag="RCA_01120"
/note="Iron-sulphur cluster assembly; Region:
Fe-S_assembly; cl01123"
/db_xref="CDD:174541"
gene 266645..267172
/gene="def"
/locus_tag="RCA_01125"
/db_xref="GeneID:11860538"
CDS 266645..267172
/gene="def"
/locus_tag="RCA_01125"
/EC_number="3.5.1.88"
/note="COG0242 N-formylmethionyl-tRNA deformylase"
/codon_start=1
/transl_table=11
/product="peptide deformylase"
/protein_id="YP_005299284.1"
/db_xref="GI:379022623"
/db_xref="GeneID:11860538"
/translation="MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDA
AGLAAVQVGILKRILVIDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISV
PRQRVEVARPESIKIKYLDYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKR
DVVLRKLKKLKNNIV"
misc_feature 266660..267094
/gene="def"
/locus_tag="RCA_01125"
/note="Polypeptide or peptide deformylase; a family of
metalloenzymes that catalyzes the removal of the
N-terminal formyl group in a growing polypeptide chain
following translation initiation during protein synthesis
in prokaryotes. These enzymes utilize Fe(II)...; Region:
Pep_deformylase; cd00487"
/db_xref="CDD:29602"
misc_feature order(266774..266782,266795..266797,266936..266944,
267065..267070,267077..267079)
/gene="def"
/locus_tag="RCA_01125"
/note="active site"
/db_xref="CDD:29602"
misc_feature order(266780..266782,266795..266797,266942..266944,
267068..267070)
/gene="def"
/locus_tag="RCA_01125"
/note="catalytic residues [active]"
/db_xref="CDD:29602"
misc_feature order(266939..266941,267065..267067,267077..267079)
/gene="def"
/locus_tag="RCA_01125"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29602"
gene 267169..268080
/gene="fmt"
/locus_tag="RCA_01130"
/db_xref="GeneID:11860539"
CDS 267169..268080
/gene="fmt"
/locus_tag="RCA_01130"
/EC_number="2.1.2.9"
/note="COG0223 Methionyl-tRNA formyltransferase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_005299285.1"
/db_xref="GI:379022624"
/db_xref="GeneID:11860539"
/translation="MKVIFMGTPEFAVPTLKKLIAHHEVTAVFTQQPKAKGRGLSLAQ
SPIHQLACEHQIPVYTPSTLRNDKTINLINKVNADIIVVIAYGFIVPKAILDAKKYGC
LNIHPSDLPRHRGAAPLQRTIIEGDKTSSVCIMRMDTGLDTGDILMKEDFDLEERTTL
EELHNKCANLGAELLINTLVNIDNIVPIKQSSDGITYAHKLTKEEGKINWQDSAYSID
CKIRGMNPWPGVYFSYDDKIIKILEAEYLNVDHHFTPGTVISDKLEIACGSGILQVKK
LQQESKKALNIEEFLLGTRILKATVLK"
misc_feature 267169..268077
/gene="fmt"
/locus_tag="RCA_01130"
/note="methionyl-tRNA formyltransferase; Reviewed; Region:
fmt; PRK00005"
/db_xref="CDD:178787"
misc_feature 267169..267771
/gene="fmt"
/locus_tag="RCA_01130"
/note="Methionyl-tRNA formyltransferase, N-terminal
hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N;
cd08646"
/db_xref="CDD:187715"
misc_feature order(267187..267189,267199..267204,267415..267438,
267451..267453,267478..267489,267511..267513,
267571..267573,267577..267582,267589..267594)
/gene="fmt"
/locus_tag="RCA_01130"
/note="putative active site [active]"
/db_xref="CDD:187715"
misc_feature order(267190..267195,267199..267201,267259..267261,
267271..267273,267277..267288,267418..267429,
267478..267480,267484..267489,267511..267519,
267766..267768)
/gene="fmt"
/locus_tag="RCA_01130"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187715"
misc_feature order(267415..267417,267424..267426,267430..267438,
267451..267453,267478..267480,267577..267582,
267589..267594)
/gene="fmt"
/locus_tag="RCA_01130"
/note="putative cosubstrate binding site; other site"
/db_xref="CDD:187715"
misc_feature order(267478..267480,267484..267486,267592..267594)
/gene="fmt"
/locus_tag="RCA_01130"
/note="catalytic site [active]"
/db_xref="CDD:187715"
misc_feature 267778..268029
/gene="fmt"
/locus_tag="RCA_01130"
/note="C-terminal domain of Formyltransferase and other
enzymes; Region: Met_tRNA_FMT_C; cd08704"
/db_xref="CDD:187732"
misc_feature order(267847..267849,267880..267882,267886..267888,
268000..268002,268006..268008,268012..268017,
268021..268023)
/gene="fmt"
/locus_tag="RCA_01130"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187732"
gene 268281..268433
/locus_tag="RCA_01135"
/db_xref="GeneID:11860540"
CDS 268281..268433
/locus_tag="RCA_01135"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299286.1"
/db_xref="GI:379022625"
/db_xref="GeneID:11860540"
/translation="MRIVALLTKPGNILTDPKQIKEIYAHIKFAALQKNILGKFDKNG
KYIQGF"
gene 268899..271670
/locus_tag="RCA_r05357"
/db_xref="GeneID:11860541"
rRNA 268899..271670
/locus_tag="RCA_r05357"
/product="23S ribosomal RNA"
/db_xref="GeneID:11860541"
gene 271923..272037
/locus_tag="RCA_r05353"
/db_xref="GeneID:11860542"
rRNA 271923..272037
/locus_tag="RCA_r05353"
/product="5S ribosomal RNA"
/db_xref="GeneID:11860542"
gene complement(272706..273887)
/locus_tag="RCA_01140"
/db_xref="GeneID:11860543"
CDS complement(272706..273887)
/locus_tag="RCA_01140"
/note="COG1485 Predicted ATPase"
/codon_start=1
/transl_table=11
/product="methionyl-tRNA formyltransferase"
/protein_id="YP_005299287.1"
/db_xref="GI:379022626"
/db_xref="GeneID:11860543"
/translation="MTIPLDVKQIALSKELTEIALELNKPRTLLQIFSKNNLKSGIYL
YGPVGSGKTMLMNSFFEELTASKIIIHYQNFMQEIHKMMHKLQTENQKDIILKIAKDY
AKNTRVLCIDEFEIKDITDAMIIGRLFDKLIKQNIFIFITSNTSPNNLYKNGLQRESF
LPFIKIINNTFYVKYLDNHHDYRFDKALGVKGERIIYPLTLENQKKLEKIITDISDNR
VLSKLTYREEFIGDMEYSTTTIPVHEDTSTELTYKLPLEGEYAKNSTNFTPQNIEVLG
RKISFQKVHKRILVTDYNELFTRDLSYIDYINICQNFNVIIVQNVHTIDANDTNTVVR
FINFIDNAYFYKILLFMSLEDDPNKIYQGSNRSEEFKRTISRLNEMNSAAYLLNNNLR
N"
misc_feature complement(272724..273872)
/locus_tag="RCA_01140"
/note="Predicted ATPase [General function prediction
only]; Region: COG1485"
/db_xref="CDD:31674"
misc_feature complement(273447..273809)
/locus_tag="RCA_01140"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(273729..273752)
/locus_tag="RCA_01140"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(273459..273461,273552..273554,
273726..273749))
/locus_tag="RCA_01140"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(273549..273566)
/locus_tag="RCA_01140"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(273102..273236)
/locus_tag="RCA_01140"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
gene complement(274408..275568)
/locus_tag="RCA_01145"
/db_xref="GeneID:11860544"
CDS complement(274408..275568)
/locus_tag="RCA_01145"
/note="COG0809
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
(queuine synthetase)"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_005299288.1"
/db_xref="GI:379022627"
/db_xref="GeneID:11860544"
/translation="MKLSDFDFDLPSELIAQYPSSKRDHSDLLIAATPPIKTKFYNII
DYLKEGDLLVFNNSKVIKAKLNLEKNRPLSKLAYREKFEGDMECRTAVYTNVREDSST
GSTYKLPLEVELEKRSNITINLNQRLSNNCWSAFAKPARRLNIGDEFHFDNHKVIIVE
KLAIGEIKVKFELDDISVFEFLDKYGEMPLPLYIRHHEAQKSNNERYQNIYSSIEGSV
AAPTAGLHFTNDILNKLKAKNIQTTFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITP
DTARLINKAKQEKRRIIAVGTTTLRTLESSCNNGTVKACDFETDIFITPGFKFQTADI
LLTNFHFPKSTLFMLICAFAGFKEMHKLYKYAIKEKMRFFSYGDATLLYRKI"
misc_feature complement(274411..275568)
/locus_tag="RCA_01145"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region:
PRK01424"
/db_xref="CDD:134556"
misc_feature complement(274420..275568)
/locus_tag="RCA_01145"
/note="S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional; Region: queA;
PRK00147"
/db_xref="CDD:178900"
gene complement(276213..277982)
/locus_tag="RCA_01150"
/db_xref="GeneID:11860545"
CDS complement(276213..277982)
/locus_tag="RCA_01150"
/note="COG1132 ABC-type multidrug transport system, ATPase
and permease components"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATP-binding protein"
/protein_id="YP_005299289.1"
/db_xref="GI:379022628"
/db_xref="GeneID:11860545"
/translation="MIKYPTLSKSTFSLGIYFLKFDKVKITLLTVICILLGMIPAIDS
ILLQKIIDLIESFRDKNTHNFLSSMIYWAVFYALWWESINIAYRSYDYLYLKTMPVIK
GTILNELYNYTQYHSHKFFQDNLAGHISNRITETARSFEMIISIFGEKILRKLAIIVF
ALIALYSVHYVFTTIFILWITVFLGLSVLFSDRINKYSLNYARSQSFVAGSIVDAISN
INAVRMFTAHKFERQHLETRVENAIADEQTMQFFMFKLRYALGTSCSIMIFIMIYYLS
VLRSELSITIGDCVLVLTLCINVADDIWDLTQEIGDVFEQIGAFNQGLSLMAPHIITD
IENATPLDIKEGVIEFRNVTFNYHHNNNLFYNKSVLIPSKQKVGLVGFSGSGKTTFIS
LLTRLHDITEGMILIDNQNIKNVTQDSLRKAISLIPQEPVLFHRTILENIRYGTKEAT
IEEVIEAAKSAHIHDVINNLPDGYDTMCGERGNNLSGGQRQRIIIARAILKNAPILIL
DEATSSLDSETESLIQESMEYLMQNKTVIVIAHRLSTLLNMDRILVFEKGSIIDDGSH
AELLKNSKLYQKLWNSQVKGLIV"
misc_feature complement(276234..277931)
/locus_tag="RCA_01150"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(277098..277901)
/locus_tag="RCA_01150"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(276234..276941)
/locus_tag="RCA_01150"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(276819..276842)
/locus_tag="RCA_01150"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(276360..276362,276453..276458,
276696..276698,276816..276824,276828..276833))
/locus_tag="RCA_01150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(276696..276707)
/locus_tag="RCA_01150"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(276501..276530)
/locus_tag="RCA_01150"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(276453..276470)
/locus_tag="RCA_01150"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(276435..276446)
/locus_tag="RCA_01150"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(276354..276374)
/locus_tag="RCA_01150"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 278167..278439
/locus_tag="RCA_01155"
/db_xref="GeneID:11860546"
CDS 278167..278439
/locus_tag="RCA_01155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299290.1"
/db_xref="GI:379022629"
/db_xref="GeneID:11860546"
/translation="MQEQELSSNFLEEQEKSKEDASPFFDVKYICQASLLITDSIQKG
YDVTQLPNGDVNVTEVRIVNVHYNWNSEKGKFVKTNQIEFNNSKSV"
misc_feature 278167..278430
/locus_tag="RCA_01155"
/note="Protein of unknown function (DUF2671); Region:
DUF2671; pfam10877"
/db_xref="CDD:151326"
gene 278612..279976
/locus_tag="RCA_01160"
/db_xref="GeneID:11860547"
CDS 278612..279976
/locus_tag="RCA_01160"
/note="COG1271 Cytochrome bd-type quinol oxidase, subunit
1"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit I"
/protein_id="YP_005299291.1"
/db_xref="GI:379022630"
/db_xref="GeneID:11860547"
/translation="MEFDQVLLSRIQFAFTISFHVIFPAFTIGLASFLVVIEGLWLNT
KKQVYKEIYKFWMKIFAVTFSMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVF
TAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAIGTVISAFWIIAASSWMHTPAGFEL
QGKGFFYPLNWLEIIFNPSFPYRFFHMITAAYLTTSFVIGGVGSFYLLNNRYKEHAKI
MLFMAVLMALIVAPIQIFIGDLHGLNTLKYQPVKVAAIEGIWNTEKGAALNLIGFPDE
EEEKTKYAIEIPYASSLILTHSLEGEVKGLKEWTQEERPPVAVVFFSFRIMVGIGFLM
VFTGVAGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILK
TMDTVSPVLGKYVFISLIAFIVVYALIFGAGIYYIMHLIKKGIEAIDNKEMYGEISLN
NPLL"
misc_feature 278633..279922
/locus_tag="RCA_01160"
/note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
Bac_Ubq_Cox; pfam01654"
/db_xref="CDD:201906"
gene 280654..281673
/locus_tag="RCA_01165"
/db_xref="GeneID:11860548"
CDS 280654..281673
/locus_tag="RCA_01165"
/note="COG1294 Cytochrome bd-type quinol oxidase, subunit
2"
/codon_start=1
/transl_table=11
/product="cytochrome d ubiquinol oxidase subunit II"
/protein_id="YP_005299292.1"
/db_xref="GI:379022631"
/db_xref="GeneID:11860548"
/translation="MLNFASYIDLPLVWGGLIATAICLYVLLDGFDLGIGILFPFAPT
DDCRHTMINSIAPFWDGNETWLVLGGGGLFAVFPLAYSLLMPALYIPITFMLLGLIFR
GVAFEFRFKAHIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIEVEGREFAGGNFDF
LTPFSVMTGIALMFGYALLGATWLILKTEKKTQDWAYKSALYILFYVALFMGLVSLWV
PFLNNHINHRWFSVPNIYYLSIVPIVTALIFIKLIKAIKQKKEVKPFIYTTLLFLLGY
LGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPIILGYTFYCYYIFRGKSS
HHPIY"
misc_feature 280678..281643
/locus_tag="RCA_01165"
/note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
pfam02322"
/db_xref="CDD:190279"
misc_feature 280786..281667
/locus_tag="RCA_01165"
/note="cytochrome d ubiquinol oxidase subunit 2;
Provisional; Region: PRK15003; cl12219"
/db_xref="CDD:187194"
gene 281980..282786
/locus_tag="RCA_01170"
/db_xref="GeneID:11860549"
CDS 281980..282786
/locus_tag="RCA_01170"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="Beta 1,4 glucosyltransferase"
/protein_id="YP_005299293.1"
/db_xref="GI:379022632"
/db_xref="GeneID:11860549"
/translation="MTKISAFIITKNEAARIARAINSVKNIVDEVVVVDSESSDGTVS
IAEELGATVVIKPWLGYVGQKSFAESLCIYDWILNIDADEELSKDLQDEIEYIFVSGN
QDHYLAYKIKLLIMHRDDRKPRMFAPFNKCIRLYNKKFASFANNVNSTTHDSVVFNKD
VDFTDKVYLLNEPAYHYSGISIEQLVTKANFYSSEQAKDLMVQDKKVSNIRIATEMLW
WFLKAFFIRRYFVFGFDGFVDSMIFAFARFLRLAKLRDKTKNNYERKFSR"
misc_feature 281986..282699
/locus_tag="RCA_01170"
/note="UDP-glucose LOS-beta-1,4 glucosyltransferase is
required for biosynthesis of lipooligosaccharide; Region:
Beta4Glucosyltransferase; cd02511"
/db_xref="CDD:133005"
misc_feature order(282220..282222,282226..282228)
/locus_tag="RCA_01170"
/note="putative metal binding site; other site"
/db_xref="CDD:133005"
gene 282764..284005
/locus_tag="RCA_01175"
/db_xref="GeneID:11860550"
CDS 282764..284005
/locus_tag="RCA_01175"
/note="COG0612 Predicted Zn-dependent peptidases"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine--tRNA
ribosyltransferase-isomerase"
/protein_id="YP_005299294.1"
/db_xref="GI:379022633"
/db_xref="GeneID:11860550"
/translation="MKENFHVSTLKNGLTILTYNMPYVNSVAINLIVKVGSRYENPEE
EGISHFLEHMAFKGTKTRTAKQIAEEFDEIGGHFNAYTGHEKTVYYARVLSENCNKAL
NILADIIQNSIFSEEDIVKEYQVILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKSIL
GTSKTLASFTKEHFLSFIDKHYNARNLYLSVAGNVDHDKIVCTAEQLFSSLKQGVKSS
FLPAKYIGGNSFIKKDLAQTTLILGFEGTPYINLERLYRTQLFAIIFGGGMSSRLFQH
IRERLGLAYAVGSYNSTYIDSGVFTIYASTAHDKLELLCKELKNEITKMTEKVNEEEM
IRAKTQLRSNLLMAQEKVAYKSEEIGKHYAAFGKYISPEEIMEIITNIKADDIINTAN
KIFSGTTTSAIIGPSILYYEF"
misc_feature 282764..283981
/locus_tag="RCA_01175"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 282809..283249
/locus_tag="RCA_01175"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature 283265..283786
/locus_tag="RCA_01175"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 284015..284725
/locus_tag="RCA_01180"
/db_xref="GeneID:11860551"
CDS 284015..284725
/locus_tag="RCA_01180"
/EC_number="6.3.2.6"
/note="COG0152
Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazolesuccinocarboxamide
synthase"
/protein_id="YP_005299295.1"
/db_xref="GI:379022634"
/db_xref="GeneID:11860551"
/translation="MKKKLYEGSSKILYSAEEDFLLIMAFSDKAILETGKTVDISGKG
VLNNNISSFLMDKLEMIGIANHFIEKINMREQLIQYVEVFPIQVIISSVACGRFVKEF
GLDEGYVFDKPIMDFKVRSREFKYPIVNEYQILNFGWLTRDEITAVKEQALHIYDFLS
GLFIGVGIRLVECKLEFGRVFNGEESIIMLTDEISPDNCRLWHINSNEKLGFELLENE
PSKVFESYQLIAERLKEK"
misc_feature 284015..284722
/locus_tag="RCA_01180"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature 284024..284719
/locus_tag="RCA_01180"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature order(284027..284032,284036..284041,284045..284047,
284051..284056,284078..284080,284084..284086,
284210..284212,284249..284251,284255..284257,
284261..284263,284372..284374,284540..284542,
284585..284590)
/locus_tag="RCA_01180"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature order(284030..284032,284036..284047,284051..284053,
284078..284080,284114..284116,284213..284215,
284246..284257,284261..284263,284273..284275,
284279..284281,284285..284287,284297..284305,
284366..284368,284372..284374,284390..284392,
284528..284536,284540..284542,284588..284590,
284603..284614)
/locus_tag="RCA_01180"
/note="active site"
/db_xref="CDD:133470"
misc_feature order(284114..284116,284273..284275,284279..284281,
284285..284287,284297..284305,284366..284368,
284390..284392,284528..284536,284603..284614)
/locus_tag="RCA_01180"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene 284915..286510
/locus_tag="RCA_01185"
/db_xref="GeneID:11860552"
CDS 284915..286510
/locus_tag="RCA_01185"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazolesuccinocarboxamide
synthase"
/protein_id="YP_005299296.1"
/db_xref="GI:379022635"
/db_xref="GeneID:11860552"
/translation="MKIRFIIISFLVLILVGWGYAAYKFASQSKENIISILDKYEEYI
TYDSIKVNKYSFSVTLNKVMLKPIDFYYDEIVIRHVPFLNITKIDSYGNNVKITTAKD
GENIFYSPDHHTTIWFRKSLFNRLPDYWKLSMSDRKSTLYGARDAEKLAESISNSVIT
NTKTSDNLNLLTLDGKTVVSFISEKYSKNLSDKVFKFLRDKIGEEAPFDSFEYDVGYL
DVLDVPTTYKGQLKLKYSNELVALGKLLIQNFSLDQKQDENVHAIFMQILGELVKGKP
FLFACDIERKGKVKSNLYKLNVEKNKIFDFALNIKSTIEPSEIYQKTAVEALGRYFSN
GLNKRAELDKVFKLSSPITQEDGEKIMAVFAKINNVKFNLKGEFDPEEKKLSGKTNLV
MDDFNFAIDIDMPNLDNPLNLESVIKLSDPNAFINNFVHYTNNAIIPVLNKIEDSKEF
ALNLGKQSSVIEQYGFRVIEAFSKNSELQDGESLIVDIKGKDDGLTINDKTIDQIFSD
ARVLEFINAMAQIDQERKQVVGK"
gene 286730..288637
/gene="thrS"
/locus_tag="RCA_01190"
/db_xref="GeneID:11860553"
CDS 286730..288637
/gene="thrS"
/locus_tag="RCA_01190"
/EC_number="6.1.1.3"
/note="COG0441 Threonyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_005299297.1"
/db_xref="GI:379022636"
/db_xref="GeneID:11860553"
/translation="MINISLSDGSVRQFEKGMTIYEVANAISMSLAKQAMVAEINGEL
KDLSTVIENNCKLRILTAKDPECLEIIRHDAAHLTAEAVKELFPETQVTIGPAIENGY
YYDFARDKPFTVDDLAVIEAKMQELAKKNEKVTRELWNRDKAIEFFRSIGEHYKAEII
ASIPTDEPITLYRQGNFIDLCRGPHAPSTGFVKYFKLMKVAGSYWRGDSRNEVLQRIY
GTAWATKEQLDHYLFMLEEAEKRDHRKLGRELDLFHFQEEAQGMVFWHDKGWSIYNIV
EQYIRKKIRKNGYTEVKSPVLVDKRLWEASGHWEKFRDNMFALEADNKILALKPMNCP
CHVQIFKQGIKSYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQI
TDETVSFCKLLTEVYKDFGFTDIKVKFSDRPEIRAGSDEVWDKAENALKEAVGKAGFT
YTLNPGEGAFYGPKLEFVLTDAIGRQWQCGTLQMDFVLLEQLDASYVAASGEKKRPVM
LHRAILGSLERFIGILIEEYAGCFPLWLAPVQVAIATITSDLNDYALAVQKALIDNGV
RTDINISPDKINYKIREFSNHKVPLIAIIGKKEKENKQVTIRRLGTTDQQVLSVKQLI
TLISEENSKYL"
misc_feature 286730..288631
/gene="thrS"
/locus_tag="RCA_01190"
/note="threonyl-tRNA synthetase; Reviewed; Region: thrS;
PRK00413"
/db_xref="CDD:179011"
misc_feature 286733..286915
/gene="thrS"
/locus_tag="RCA_01190"
/note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is
a class II tRNA synthetase that couples threonine to its
cognate tRNA. In addition to its catalytic and
anticodon-binding domains, ThrRS has an N-terminal TGS
domain, named after the ThrRS, GTPase, and...; Region:
TGS_ThrRS_N; cd01667"
/db_xref="CDD:133437"
misc_feature 287234..287380
/gene="thrS"
/locus_tag="RCA_01190"
/note="Threonyl and Alanyl tRNA synthetase second
additional domain; Region: tRNA_SAD; smart00863"
/db_xref="CDD:197931"
misc_feature 287450..288343
/gene="thrS"
/locus_tag="RCA_01190"
/note="Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is responsible
for the attachment of threonine to the 3' OH group of
ribose of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent...; Region: ThrRS_core;
cd00771"
/db_xref="CDD:29816"
misc_feature order(287459..287461,287498..287500,287651..287653,
287663..287665,287672..287677,287717..287719,
287813..287815,287819..287821,287825..287833,
287846..287854,287861..287863,287867..287869,
288152..288154,288161..288166,288176..288178,
288272..288277,288284..288286)
/gene="thrS"
/locus_tag="RCA_01190"
/note="active site"
/db_xref="CDD:29816"
misc_feature order(287471..287473,287489..287491,287495..287503,
287507..287509,287513..287515,287519..287524,
287528..287530,287537..287539,287582..287587,
287597..287602,287606..287608,287612..287620,
287624..287626,287678..287686,287690..287701,
287705..287707,287741..287746,287753..287761,
287765..287773,287810..287812,287816..287818,
287825..287827,287855..287860,287939..287941,
288065..288073,288218..288220,288224..288226)
/gene="thrS"
/locus_tag="RCA_01190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29816"
misc_feature 287597..287620
/gene="thrS"
/locus_tag="RCA_01190"
/note="motif 1; other site"
/db_xref="CDD:29816"
misc_feature 287810..287821
/gene="thrS"
/locus_tag="RCA_01190"
/note="motif 2; other site"
/db_xref="CDD:29816"
misc_feature 288272..288286
/gene="thrS"
/locus_tag="RCA_01190"
/note="motif 3; other site"
/db_xref="CDD:29816"
misc_feature 288341..288610
/gene="thrS"
/locus_tag="RCA_01190"
/note="ThrRS Threonyl-anticodon binding domain. ThrRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in tRNA-binding, so
that the activated amino acid is...; Region:
ThrRS_anticodon; cd00860"
/db_xref="CDD:29800"
misc_feature order(288365..288370,288473..288475,288491..288493,
288515..288517,288545..288547,288551..288553)
/gene="thrS"
/locus_tag="RCA_01190"
/note="anticodon binding site; other site"
/db_xref="CDD:29800"
gene 289405..289566
/locus_tag="RCA_01195"
/db_xref="GeneID:11860554"
CDS 289405..289566
/locus_tag="RCA_01195"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299298.1"
/db_xref="GI:379022637"
/db_xref="GeneID:11860554"
/translation="MAVVYSVFTIMQISQDNIDKENLAELKISKGKEISFAYKEGSKW
ALYRVFRRW"
gene complement(290069..290287)
/locus_tag="RCA_01200"
/db_xref="GeneID:11860555"
CDS complement(290069..290287)
/locus_tag="RCA_01200"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299299.1"
/db_xref="GI:379022638"
/db_xref="GeneID:11860555"
/translation="MIKILILKKILLLGKIIMQRLTTYSFQAIKLEPLMEIQLSKEGR
KISKQIQKCFKKKVFYSRTGIRKLICTF"
misc_feature complement(<290108..>290206)
/locus_tag="RCA_01200"
/note="Zn-ribbon-containing, possibly nucleic-acid-binding
protein (DUF2310); Region: DUF2310; cl02380"
/db_xref="CDD:154884"
gene complement(290407..290601)
/locus_tag="RCA_01205"
/db_xref="GeneID:11860556"
CDS complement(290407..290601)
/locus_tag="RCA_01205"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299300.1"
/db_xref="GI:379022639"
/db_xref="GeneID:11860556"
/translation="MVLYSVIPNKDTLYDSHLCHNALETKNKLKQLGIITNYKITANY
INKAVFTDIVSCYLSKHRFI"
misc_feature complement(<290467..290598)
/locus_tag="RCA_01205"
/note="Zn-ribbon-containing, possibly nucleic-acid-binding
protein (DUF2310); Region: DUF2310; cl02380"
/db_xref="CDD:154884"
gene complement(291008..291421)
/locus_tag="RCA_01210"
/db_xref="GeneID:11860557"
CDS complement(291008..291421)
/locus_tag="RCA_01210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299301.1"
/db_xref="GI:379022640"
/db_xref="GeneID:11860557"
/translation="MSNSHIHILIAIGCLALIVIFLMYKKIAARKKNILPTKGSNVDN
TQNVALNSKKPKNKKLTLQERIELSWKFLYDITEIILNKFSKEDVIQVNKCGQILLEN
GVRYEHVVDLAIPQAKSHTQTVEQEQSKGKKALGV"
misc_feature complement(291098..291358)
/locus_tag="RCA_01210"
/note="Protein of unknown function (DUF2660); Region:
DUF2660; pfam10859"
/db_xref="CDD:151308"
gene complement(291722..291904)
/locus_tag="RCA_01215"
/db_xref="GeneID:11860558"
CDS complement(291722..291904)
/locus_tag="RCA_01215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299302.1"
/db_xref="GI:379022641"
/db_xref="GeneID:11860558"
/translation="MLYRLLNIYQKVKDKVEENIVELKSNIKIAMPKDINIDKFTIKN
TITNINIISMKLKQNY"
gene 292937..294301
/locus_tag="RCA_01220"
/db_xref="GeneID:11860559"
CDS 292937..294301
/locus_tag="RCA_01220"
/note="COG1538 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="outer membrane protein tolC"
/protein_id="YP_005299303.1"
/db_xref="GI:379022642"
/db_xref="GeneID:11860559"
/translation="MRKLTTFIVILLLASSAISVDLQEALTEGYKNNEELKAARIKFL
NSIESFPRAFAEFMPSAGLQINRNNTKNKYNKKYADRLGLILRETDSDQGAFTIEQSL
FNGGSSVAALKAAQAGFRASRGEYYAGEQKVLFNLITVYLDCFESKEKYDISESRVRT
NIQQVNTVEEKLRLGEATAIDIATARAGLAAAETNKLAAYADFQGKKANFIRVFGIAP
TNITMPDLPKMLPASLDELTKKAAKLNPDIDSARHNVTSAKASEMAAKGKLLPQVSVK
LQSGRTHYNPQDPVVQNINTKSVTTTLSVNIPIYPEGGAQYSRIRSAQNQTRNSAVQL
DSAIKQTQAWVVSVWEGFEAAKSRIVAANQGVDAAQISYDGTVQEEIVGSKTILDVLT
AEEKLYEAKITRVDAYKSLVLAAYHMKLLTGELTAQNLKLKVKYFSPEEEFKTIKKKM
FIGF"
misc_feature 293000..294247
/locus_tag="RCA_01220"
/note="Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and secretion];
Region: TolC; COG1538"
/db_xref="CDD:31727"
gene 294303..294701
/locus_tag="RCA_01225"
/db_xref="GeneID:11860560"
CDS 294303..294701
/locus_tag="RCA_01225"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299304.1"
/db_xref="GI:379022643"
/db_xref="GeneID:11860560"
/translation="MSIESKKNQDMSIEDILKSIKGVINEPKNPIHGNDSENEDILEL
TEIVNQVEEEKLISTKSAEAIGDILKNFTDTIKDKKLDNNIPSKNALEELVVEMLKPE
LKLWLDKNLPLLVKELVEIEIKKLVQNSKR"
misc_feature <294303..294698
/locus_tag="RCA_01225"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3827"
/db_xref="CDD:33620"
gene 294880..296661
/locus_tag="RCA_01230"
/db_xref="GeneID:11860561"
CDS 294880..296661
/locus_tag="RCA_01230"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="threonyl-tRNA synthetase"
/protein_id="YP_005299305.1"
/db_xref="GI:379022644"
/db_xref="GeneID:11860561"
/translation="MLNKLCKILFFIKLLLMTGQSYAVPPTLPPSLPDVEVATTEDKE
FRYNSDTSIFDKFKQFFSKPQKKYISPKSTNEQTKTADQEEPKLSQEPNENEHADSFM
DVSNVVLPSVASNNDVYTNTNHESSVNLASYDNIPDIQVMQQEPSESEIAETFIDIGS
AKLPSATSDEMRDAEIAANVHDENLASNIITRNNILRPMVSIPPARPGSYIVPPSPPV
QIYKPTNLLAVHKKHILLNPPPDVNKTQESIIPIAPPATSSIPNMPAISLPAVSTPVT
QDTNPSTIPATVPLVETPVVPSNVPVPLVMPTDQLSTQPIMPSSTNTAVSTTPIVVPD
TNFSADINNSKETLTASSNIPKKQDWNTPLIPVVVVNPNQSKSSEMQIKNSQTTNNQE
KSLPVSSPNVMIQEQYNNINNETLESATKFVKDETQMLLLPDDDIVLGKLTEQATLEQ
MDMYAYIRLFQKKEEWIVNAERRKVVESFIKYDNDINKKKDIYANLSYYGAVDNAFRA
VDRNNLFGLRALLDVYPILQEKSRLGETLLTAATYNDNYYLAKFLVIRGIKISTLNYK
CQYPLDIALVQGNSNIACILIKAKGYN"
misc_feature 296401..>296646
/locus_tag="RCA_01230"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
misc_feature 296485..296640
/locus_tag="RCA_01230"
/note="Ankyrin repeats (many copies); Region: Ank_4;
pfam13637"
/db_xref="CDD:205814"
gene 296894..298882
/locus_tag="RCA_01235"
/db_xref="GeneID:11860562"
CDS 296894..298882
/locus_tag="RCA_01235"
/note="COG0187 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit B"
/protein_id="YP_005299306.1"
/db_xref="GI:379022645"
/db_xref="GeneID:11860562"
/translation="MHDLFSFNKEKKNKLVNNSYSAKDIEVLEGLEPVRKRPGMYIGG
IDSSAMHHLVSEVLDNAMDEAVAGYASIITIKMHQDHSITIFDNGRGIPIDNHPKFPD
KSALEVILTTLHSGGKFSNNVYHTAGGLHGVGISVVNALSKHLDVKVYKQGKLYSQSY
SRGEKLTGLICEEAPKRLRGTSINFTPDPEIFGEKLHFNPKKIYELARSKAYLYRGVT
IEWECEVEVSSDIPKKSLINFPNGLKDYLSSKITLDNLITQEIFSGNIESKPDGVILE
WAICWQNNDNSAFIQSYCNTVPTPQGGTHEQGLKSAILRGLKTYGEMIGNKKAANLTI
EDILETASVVLSIFISEPSFQGQTKEKLVSQGVSKPVENIIKDHFDHFLSSNKALATN
LLEHVIAIAEFRISKKNTKNISRKNATQKLRLPGKLADCTRTSPEGTELFIVEGDSAG
GSAKQARNRETQAVLPLWGKVLNVASSRLEKIVNNQAIQDLEIALACGSLKNYKEENL
RYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKGHLYLAKPPLYRLTQSNKTYYA
ADEEEKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLEDFQ
NVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLDI"
misc_feature 296942..298840
/locus_tag="RCA_01235"
/note="DNA topoisomerase IV subunit B; Reviewed; Region:
PRK05559"
/db_xref="CDD:180127"
misc_feature 297041..297340
/locus_tag="RCA_01235"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(297059..297061,297071..297073,297080..297082,
297146..297148,297152..297154,297158..297160,
297164..297169,297287..297298)
/locus_tag="RCA_01235"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 297071..297073
/locus_tag="RCA_01235"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(297158..297160,297164..297166,297287..297289,
297293..297295)
/locus_tag="RCA_01235"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 297614..298132
/locus_tag="RCA_01235"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 297776..297778
/locus_tag="RCA_01235"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(297944..297946,297953..297958,297962..297964,
298097..298102,298112..298114,298124..298126)
/locus_tag="RCA_01235"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(297962..297964,297968..297970)
/locus_tag="RCA_01235"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 298208..298549
/locus_tag="RCA_01235"
/note="Topoisomerase-primase domain. This is a nucleotidyl
transferase/hydrolase domain found in type IA, type IIA
and type IIB topoisomerases, bacterial DnaG-type primases,
small primase-like proteins from bacteria and archaea, OLD
family nucleases from...; Region: TOPRIM; cl00718"
/db_xref="CDD:207177"
misc_feature order(298226..298231,298238..298240,298445..298447,
298451..298453,298457..298459)
/locus_tag="RCA_01235"
/note="active site"
/db_xref="CDD:173773"
misc_feature order(298226..298228,298445..298447)
/locus_tag="RCA_01235"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173773"
misc_feature 298637..298831
/locus_tag="RCA_01235"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 299049..300425
/locus_tag="RCA_01240"
/db_xref="GeneID:11860563"
CDS 299049..300425
/locus_tag="RCA_01240"
/note="COG0793 Periplasmic protease"
/codon_start=1
/transl_table=11
/product="tail-specific protease"
/protein_id="YP_005299307.1"
/db_xref="GI:379022646"
/db_xref="GeneID:11860563"
/translation="MLLRLIITLWFIINSICTFAEEEKEPENKISNQEAYKQFQNVFE
RIEKDYVQIPDRQKMIDAAINGMLNSLDPHSSYYTDEDLEDIFTFTKGEFGGIGVEIM
YDSGVIKIISPIDDLPAFKAGLKGGDYIVGVNDELVSTLGPHKAIKEMRGTAGTKVKL
LIIKEEEAKPQEIELTREIVKIKPIKAHLEKNNIAYIRITTFNESTISELKAAVKKLK
IESKDNLRGIILDLRNNAGGILDQAIAVSDYFIDSGIIVTTKGRTASSNSEIKANEFS
LKAPKVPMIVLINGNSASASEIVAGALQDHKRAIILGTKSFGKGSVQSLTQINSRAAV
KLTISKYYTPSGRSIQAEGIEPDIIIEPAKVEYPEVKKIDKRFSESSLKNYLKNDNEK
NKDHSSKNKDSKKETKTKNNKQEENELSELYKKDYQFARAYDVITGLIINKKLETSDI
KQEDKDKE"
misc_feature 299061..300206
/locus_tag="RCA_01240"
/note="Periplasmic protease [Cell envelope biogenesis,
outer membrane]; Region: Prc; COG0793"
/db_xref="CDD:31136"
misc_feature 299148..>299285
/locus_tag="RCA_01240"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 299328..299585
/locus_tag="RCA_01240"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(299334..299345,299349..299351,299484..299489,
299496..299501)
/locus_tag="RCA_01240"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <299628..300131
/locus_tag="RCA_01240"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(299928..299930,300003..300005)
/locus_tag="RCA_01240"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene 300670..302163
/locus_tag="RCA_01245"
/db_xref="GeneID:11860564"
CDS 300670..302163
/locus_tag="RCA_01245"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="histidine kinase sensor protein"
/protein_id="YP_005299308.1"
/db_xref="GI:379022647"
/db_xref="GeneID:11860564"
/translation="MNHNKYIVRLSFIILFLNIVINMMFYRYFMIKEMIVKHVALEHT
QIVKLYTDNIWNTHKNVISKLHKFGYLKLLQDQEFIDFVKITAQWFTNLNINISIYDL
KGNKFITSNMLHMYSVENYKDDSLVEMVTAKIDKFFLKSFTSKAPLQDAFEGIASHIL
LPRVIIENESDLTVEEASFVTSYIPVIDNNLDYPVNAVFEINTNITNQWKNITSLEQK
VFITFIIIFIIFCTIIISNTNYARQIIEEQLETNRNLKAQIEKLERTSSSNTKFFANI
SHELRTPLNSIIGFSEILMSERDAEKSKNYIKDINDAGKHLLSMINDILDLSKASADK
LKVDSMDLDLNKLISSSLALVKSRADQAEVALISKLPKEHVVIKADPKRLKQVLLNLL
SNAVKFTNSGGSVTIALKKDELAKLVYIKVIDTGIGIEEKDIPKTLSVFGQIDSELSR
KYEGTGLGLPLTKKLVELMKGKFDLQSKINKGTTVTITFTYDGSIEI"
misc_feature 301477..301656
/locus_tag="RCA_01245"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(301483..301485,301495..301497,301507..301509,
301516..301518,301528..301530,301537..301539,
301585..301587,301597..301599,301606..301608,
301618..301620,301627..301629,301639..301641)
/locus_tag="RCA_01245"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 301501..301503
/locus_tag="RCA_01245"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 301819..302136
/locus_tag="RCA_01245"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(301837..301839,301849..301851,301858..301860,
301933..301935,301939..301941,301945..301947,
301951..301956,302035..302046,302092..302094,
302098..302100,302113..302118,302122..302124)
/locus_tag="RCA_01245"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 301849..301851
/locus_tag="RCA_01245"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(301945..301947,301951..301953,302035..302037,
302041..302043)
/locus_tag="RCA_01245"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 302418..303158
/locus_tag="RCA_01250"
/db_xref="GeneID:11860565"
CDS 302418..303158
/locus_tag="RCA_01250"
/note="COG1729 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="Tol system periplasmic component"
/protein_id="YP_005299309.1"
/db_xref="GI:379022648"
/db_xref="GeneID:11860565"
/translation="MRLIILLFTFLFSIVSFGESETIKGKPLKYVVNNDFENRLDEQE
KEIRRLIGEVEVLQHKIDLLTQNSNIPNQEENTEISEDNNSKSQDVFDVVLLRDMPDD
TASKKPITVNQDIAPDKQAYDLALAAYKDNKLTEAQDKFKDFIKKYTNSSLISNAYFW
YGECFFKQKDYNGAAVNYLKGYKESPKGAKSSDGLLKLALSLGELKKTQEACNMLAKL
DREFPTNRTVALKKMTEDAKIKFGCKNK"
misc_feature 302781..302981
/locus_tag="RCA_01250"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:205610"
gene 303171..303833
/locus_tag="RCA_01255"
/db_xref="GeneID:11860566"
CDS 303171..303833
/locus_tag="RCA_01255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299310.1"
/db_xref="GI:379022649"
/db_xref="GeneID:11860566"
/translation="MTDILDEVLSDQNEVKRLIFFKKLLPIIIIISIIVITIMVVINN
NKDKRIKNNQKNGDILVKTVGLEIIKDNKELAFNTLENLVTTSNTRIKEIAALEQVAI
KISEKKYSEVKDLLNKIIANKEYSEISTSYARIAWCALAIDDQNLDIQDKEKLTKYLN
YFDDEKKPFWATATIMKAMWDIKNNMTLQVEKNLKNLLISNNVSDLLKDQAKALLVNL
NK"
misc_feature 303171..303830
/locus_tag="RCA_01255"
/note="Protein of unknown function (DUF2659); Region:
DUF2659; pfam10858"
/db_xref="CDD:151307"
gene 303856..305100
/locus_tag="RCA_01260"
/db_xref="GeneID:11860567"
CDS 303856..305100
/locus_tag="RCA_01260"
/note="COG1520 FOG: WD40-like repeat"
/codon_start=1
/transl_table=11
/product="DNA topoisomerase IV subunit B"
/protein_id="YP_005299311.1"
/db_xref="GI:379022650"
/db_xref="GeneID:11860567"
/translation="MTKKIALLLLPWILISCNGLGPQRVKNIVELTPKLSIQTNEPIY
LDSNANIYAFNVNMLKNKQYSVTRSKTITEPVFIGNIIYALDVRSNISAFSIEKNKII
WSYNLSRHKKDNYIGGGILHYNGKLYVTYGSRLLVVLDAKSGYEIIRKELPDIIRMKP
VMLNDNTVLVQTISNQTIALNAETLKTVWEHESLAEVLSASYFMRPIVQHDNVIVTYN
SGQVLALNIKNGEVRWNFDFANLSDHIAIPNFDESSILCAPVHDNMNLYIATGLGKLI
KLSTATGSVIWHVNAEGIQSMSLIGNSLFVTNNARQIAAFNPETGKVKFVADLSDRKD
PKKLKSATFLAPFIGVDNNNKRSLNVISINGVLYSFDLDNNELNIMPHIGKIIKNIRY
YGLSTNNHLYFSTERNIIFGSK"
misc_feature 303982..305073
/locus_tag="RCA_01260"
/note="Beta-barrel assembly machinery (Bam) complex
component B and related proteins; Region: BamB_YfgL;
cd10276"
/db_xref="CDD:199834"
misc_feature order(304018..304026,304033..304035,304132..304134,
304138..304140,304147..304155,304162..304164,
304267..304269,304273..304275,304282..304290,
304297..304299,304390..304392,304396..304398,
304405..304413,304420..304422,304525..304527,
304531..304533,304540..304548,304555..304557,
304684..304686,304690..304692,304699..304707,
304714..304716,304798..304800,304804..304806,
304813..304821,304828..304830,304933..304935,
304939..304941,304948..304956,304963..304965,
305062..305064,305068..305070)
/locus_tag="RCA_01260"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199834"
misc_feature 304117..304833
/locus_tag="RCA_01260"
/note="PQQ-like domain; Region: PQQ_2; pfam13360"
/db_xref="CDD:205539"
gene 305193..305669
/gene="rplM"
/locus_tag="RCA_01265"
/db_xref="GeneID:11860568"
CDS 305193..305669
/gene="rplM"
/locus_tag="RCA_01265"
/note="COG0102 Ribosomal protein L13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_005299312.1"
/db_xref="GI:379022651"
/db_xref="GeneID:11860568"
/translation="MKTYSAKPSEIEKKWWVIDAKNIVLGRLASRVANMLRGKHKPSF
TPHLDCGDNIIIINAAHVKLTGKKANTKDGKIYYRHTGFPGGIKNTTAGKILAGKHPE
RVIKMAVKRMITRNALGAKQMSNLYVYANSDHPHVGQEPVIYDFASQNPKNKSNYL"
misc_feature 305235..305588
/gene="rplM"
/locus_tag="RCA_01265"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:88313"
misc_feature order(305262..305264,305268..305273,305280..305282,
305289..305291,305301..305303,305385..305387,
305391..305393,305487..305492,305508..305516,
305520..305528,305532..305540,305544..305546,
305550..305552,305562..305564,305571..305576)
/gene="rplM"
/locus_tag="RCA_01265"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88313"
misc_feature 305490..305492
/gene="rplM"
/locus_tag="RCA_01265"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:88313"
gene 305666..306151
/gene="rpsI"
/locus_tag="RCA_01270"
/db_xref="GeneID:11860569"
CDS 305666..306151
/gene="rpsI"
/locus_tag="RCA_01270"
/note="COG0103 Ribosomal protein S9"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_005299313.1"
/db_xref="GI:379022652"
/db_xref="GeneID:11860569"
/translation="MTKLKIKTDKPLTTAVLTSKKLTVKSPREKIDSASKFYATGKRK
NAIARVWLKVGKGKIVVNKKTIDQYFSSETYVKTILQPFVLTKTIDQYDVICTVRGGG
ISGQKGAILHGISKALDKSAPDFHAMLRKGGLLTRDSRVVERKKYGQRKARKKTQFSK
R"
misc_feature 305771..306148
/gene="rpsI"
/locus_tag="RCA_01270"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene 306260..306336
/locus_tag="RCA_t05301"
/db_xref="GeneID:11860570"
tRNA 306260..306336
/locus_tag="RCA_t05301"
/product="tRNA-Met"
/db_xref="GeneID:11860570"
gene 306566..306754
/locus_tag="RCA_01275"
/db_xref="GeneID:11860571"
CDS 306566..306754
/locus_tag="RCA_01275"
/note="COG2173 D-alanyl-D-alanine dipeptidase"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine dipeptidase"
/protein_id="YP_005299314.1"
/db_xref="GI:379022653"
/db_xref="GeneID:11860571"
/translation="MYLKDIDPTIIQSMCYYADENFVGKKVEGYKAPEAILTIDAAKA
LKIVQDEVNKDDYSLNYI"
gene 306729..306887
/locus_tag="RCA_01280"
/db_xref="GeneID:11860572"
CDS 306729..306887
/locus_tag="RCA_01280"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine dipeptidase"
/protein_id="YP_005299315.1"
/db_xref="GI:379022654"
/db_xref="GeneID:11860572"
/translation="MIIHLIIYDAYRPQKVVEHFLRWTKDNIDQKNKKNFYSYIDKSK
CFTLGLYS"
misc_feature <306741..>306851
/locus_tag="RCA_01280"
/note="D-alanyl-D-alanine carboxypeptidase; Region: VanY;
cl00813"
/db_xref="CDD:207206"
gene 307212..307541
/locus_tag="RCA_01285"
/db_xref="GeneID:11860573"
CDS 307212..307541
/locus_tag="RCA_01285"
/note="COG2154 Pterin-4a-carbinolamine dehydratase"
/codon_start=1
/transl_table=11
/product="putative pterin-4-alpha-carbinolamine
dehydratase"
/protein_id="YP_005299316.1"
/db_xref="GI:379022655"
/db_xref="GeneID:11860573"
/translation="MTVLSEKKCIPCEGGVPPLEKKEIAKLLAELQNEWQVNELGHLY
KKYKFPNFVKALDFANKIAAIAEQEVHHPNLNISWGVCNVEIWTHKINGLTENDFILA
AKIESKI"
misc_feature 307311..307529
/locus_tag="RCA_01285"
/note="PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also known
as DCoH (dimerization cofactor of hepatocyte nuclear
factor-1), is both a transcription activator and a
metabolic enzyme. DCoH stimulates gene expression by...;
Region: PCD_DCoH_subfamily_a; cd00913"
/db_xref="CDD:48349"
misc_feature order(307365..307367,307377..307379,307425..307427,
307434..307436,307476..307478)
/locus_tag="RCA_01285"
/note="aromatic arch; other site"
/db_xref="CDD:48349"
misc_feature order(307365..307370,307377..307379,307389..307391,
307410..307412,307425..307427,307431..307445)
/locus_tag="RCA_01285"
/note="DCoH dimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:48349"
misc_feature order(307368..307373,307389..307394,307401..307403,
307410..307415)
/locus_tag="RCA_01285"
/note="DCoH /HNF-1 dimer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48349"
misc_feature order(307368..307370,307389..307394,307401..307403,
307413..307415)
/locus_tag="RCA_01285"
/note="DCoH tetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48349"
misc_feature order(307419..307427,307470..307472,307476..307481)
/locus_tag="RCA_01285"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48349"
gene complement(308216..308701)
/locus_tag="RCA_01290"
/db_xref="GeneID:11860574"
CDS complement(308216..308701)
/locus_tag="RCA_01290"
/EC_number="3.6.1.-"
/note="COG0494 NTP pyrophosphohydrolases including
oxidative damage repair enzymes"
/codon_start=1
/transl_table=11
/product="RNA pyrophosphohydrolase"
/protein_id="YP_005299317.1"
/db_xref="GI:379022656"
/db_xref="GeneID:11860574"
/translation="MRNASKKHLDLPYRPGVGMMILNADNHIFVGKRIDTKISAWQMP
QGGIVPGETPSIAAMREMLEEIGSDKGYIIAESKCWYSYDLPSFLIPKLWNGNFRGQK
QRWFLIRFTGNNEDININTSNPEFDQWRWASLNELLSIIIPFKRKLYQAVVKEFDSLI
Q"
misc_feature complement(308234..308668)
/locus_tag="RCA_01290"
/note="Diadenosine tetraphosphate (Ap4A) hydrolase is a
member of the Nudix hydrolase superfamily. Members of this
family are well represented in a variety of prokaryotic
and eukaryotic organisms. Phylogenetic analysis reveals
two distinct subgroups where plant...; Region:
Ap4A_hydrolase_plant_like; cd03671"
/db_xref="CDD:72891"
misc_feature complement(order(308267..308272,308276..308278,
308399..308401,308423..308428,308435..308437,
308447..308449,308453..308455,308507..308512,
308519..308521,308564..308569,308576..308578,
308594..308596,308603..308605,308654..308656))
/locus_tag="RCA_01290"
/note="putative active site [active]"
/db_xref="CDD:72891"
misc_feature complement(order(308267..308272,308276..308278,
308399..308401,308423..308428,308435..308437,
308447..308449,308453..308455,308564..308569,
308576..308578,308594..308596,308603..308605,
308654..308656))
/locus_tag="RCA_01290"
/note="Ap4A binding site [chemical binding]; other site"
/db_xref="CDD:72891"
misc_feature complement(308501..308566)
/locus_tag="RCA_01290"
/note="nudix motif; other site"
/db_xref="CDD:72891"
misc_feature complement(order(308507..308512,308519..308521))
/locus_tag="RCA_01290"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72891"
gene complement(308726..310078)
/gene="pleD"
/locus_tag="RCA_01295"
/db_xref="GeneID:11860575"
CDS complement(308726..310078)
/gene="pleD"
/locus_tag="RCA_01295"
/note="COG3706 Response regulator containing a CheY-like
receiver domain and a GGDEF domain"
/codon_start=1
/transl_table=11
/product="response regulator PleD"
/protein_id="YP_005299318.1"
/db_xref="GI:379022657"
/db_xref="GeneID:11860575"
/translation="MTTILVVDDIDTNIKLLTAKLLKEYYTVLTANSGKEALAILTKE
KIDIILLDVMMPEMDGFEVCKRIKTNLETTHIPVVMITALSDIDDRVKGLEAGADEFL
TKPINDTALFVRLKSLYRMKSLIDELKLRNSTNALLGVTNIEMHDTFADKKILLINDD
VVQAKNIRQMLLKITASVKVISNSDESDIINEYTPDLVIISSTLENDDPLRISVILRR
KAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQLRRKQYQDN
LRNYLEQSVNLAAKDCLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVN
DTYGHQAGDKILTIVSRILKNNLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRV
KIEYMDFHIEDQIEPLKKTISIGVTEYKKEESIESFIARADNAMYEAKRTGKNKVVKL
"
misc_feature complement(308729..310078)
/gene="pleD"
/locus_tag="RCA_01295"
/note="response regulator PleD; Reviewed; Region: pleD;
PRK09581"
/db_xref="CDD:181966"
misc_feature complement(309725..310066)
/gene="pleD"
/locus_tag="RCA_01295"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(309764..309769,309776..309778,
309833..309835,309899..309901,309923..309925,
310052..310057))
/gene="pleD"
/locus_tag="RCA_01295"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(309923..309925)
/gene="pleD"
/locus_tag="RCA_01295"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(309899..309907,309911..309916))
/gene="pleD"
/locus_tag="RCA_01295"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(309761..309769)
/gene="pleD"
/locus_tag="RCA_01295"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(309275..309616)
/gene="pleD"
/locus_tag="RCA_01295"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(309317..309322,309329..309331,
309392..309394,309452..309454,309476..309478,
309602..309607))
/gene="pleD"
/locus_tag="RCA_01295"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(309476..309478)
/gene="pleD"
/locus_tag="RCA_01295"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(309452..309460,309464..309469))
/gene="pleD"
/locus_tag="RCA_01295"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(309314..309322)
/gene="pleD"
/locus_tag="RCA_01295"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(308735..309208)
/gene="pleD"
/locus_tag="RCA_01295"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(308972..308974,309101..309103))
/gene="pleD"
/locus_tag="RCA_01295"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(308969..308980,308984..308986,
309050..309052,309062..309064,309074..309079,
309086..309088))
/gene="pleD"
/locus_tag="RCA_01295"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(308912..308914,308996..308998))
/gene="pleD"
/locus_tag="RCA_01295"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 310154..310720
/locus_tag="RCA_01300"
/db_xref="GeneID:11860576"
CDS 310154..310720
/locus_tag="RCA_01300"
/note="COG0231 Translation elongation factor P
(EF-P)/translation initiation factor 5A (eIF-5A)"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_005299319.1"
/db_xref="GI:379022658"
/db_xref="GeneID:11860576"
/translation="MKISANSIRTGNILVYSNDLWVVSRTPEHTQPGKGGAYVQVEMK
NLKTGTKRNERFSSSDYLEKAELEQKDYQFLYFEGNNLVLMDTKHFDQINVPKEILEE
KLPFLAENMIVKVEFYNEKPLNIELPPTVIIEISETDPVIKGATATASYKPAILTNGI
KVKVPQYLEIGEKIVVKTDDMTYVERAK"
misc_feature 310157..310717
/locus_tag="RCA_01300"
/note="elongation factor P; Validated; Region: PRK00529"
/db_xref="CDD:179058"
misc_feature 310163..310339
/locus_tag="RCA_01300"
/note="Elongation factor P (EF-P) KOW-like domain; Region:
EFP_N; pfam08207"
/db_xref="CDD:203876"
misc_feature 310355..310537
/locus_tag="RCA_01300"
/note="S1_EF-P_repeat_1: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_1;
cd04470"
/db_xref="CDD:88435"
misc_feature order(310424..310426,310499..310501,310514..310519)
/locus_tag="RCA_01300"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88435"
misc_feature 310544..310711
/locus_tag="RCA_01300"
/note="S1_EF-P_repeat_2: Translation elongation factor P
(EF-P), S1-like RNA-binding domain, repeat 1. EF-P
stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with...; Region: S1_EF-P_repeat_2;
cd05794"
/db_xref="CDD:88469"
misc_feature order(310631..310633,310682..310684,310697..310702)
/locus_tag="RCA_01300"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88469"
gene 310871..311614
/locus_tag="RCA_01305"
/db_xref="GeneID:11860577"
CDS 310871..311614
/locus_tag="RCA_01305"
/note="COG0483 Archaeal fructose-1,6-bisphosphatase and
related enzymes of inositol monophosphatase family"
/codon_start=1
/transl_table=11
/product="extragenic suppressor protein SuhB"
/protein_id="YP_005299320.1"
/db_xref="GI:379022659"
/db_xref="GeneID:11860577"
/translation="MQPITNLLINALRKAVKFLHRDFLELEMLQKNSVRNEEFCKRSY
LKLKTLLCEELQKHTKYLFFSEDKFDLNNNYESVFLMNPIDSFNNFVRSIPFFAISVT
YLKRSQGVLAPISTVIYFPALNEIYYAEKGKGAWIEKNNLNSHYQRLRLRVSDNADLK
NCLAIIEDLNHNNLGEEVDNIRSFGSPCYAATLVASGKADLICLSLLNFTLYYAFELL
IKEAGGIIIDSSNKFIYSNRYLAKKLKKY"
misc_feature 310883..311593
/locus_tag="RCA_01305"
/note="Inositol-monophosphatase-like domains. This family
of phosphatases is dependent on bivalent metal ions such
as Mg++, and many members are inhibited by Li+ (which is
thought to displace a bivalent ion in the active site).
Substrates include fructose-1; Region: IMPase_like;
cd01637"
/db_xref="CDD:30135"
misc_feature order(311000..311002,311066..311071,311114..311131,
311498..311503)
/locus_tag="RCA_01305"
/note="active site"
/db_xref="CDD:30135"
gene 311691..312008
/locus_tag="RCA_01310"
/db_xref="GeneID:11860578"
CDS 311691..312008
/locus_tag="RCA_01310"
/note="COG0012 Predicted GTPase, probable translation
factor"
/codon_start=1
/transl_table=11
/product="elongation factor P"
/protein_id="YP_005299321.1"
/db_xref="GI:379022660"
/db_xref="GeneID:11860578"
/translation="MAHYKQFEFDCDFGGQRSKFKFYIGTPQEGHHPLQFQAKWLSEE
RGGTIPDEVMKAISQLNDLAKKNGVPLPDLCVYALGTAQEVQTQEEYEDKNENQEDKA
EQA"
misc_feature 311700..311942
/locus_tag="RCA_01310"
/note="Domain of unknown function (DUF2610); Region:
DUF2610; pfam11020"
/db_xref="CDD:204583"
gene 312040..312735
/locus_tag="RCA_01315"
/db_xref="GeneID:11860579"
CDS 312040..312735
/locus_tag="RCA_01315"
/EC_number="4.1.1.65"
/note="COG0688 Phosphatidylserine decarboxylase"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_005299322.1"
/db_xref="GI:379022661"
/db_xref="GeneID:11860579"
/translation="MKHYNDLFKIIHREGYIFIASFALVSFLLASFNTKLGCIGFIAT
AWCIYFFRNPDRYVPINDDLVISPADGVIQEIKEALPPLELGLGDIAMIRVSIFLNIF
NVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETDQGQKIIFVQIAGL
IARRIICDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTTIGGETIIADF
GRKKTAQFKFERK"
misc_feature 312067..312696
/locus_tag="RCA_01315"
/note="phosphatidylserine decarboxylase; Provisional;
Region: PRK05305"
/db_xref="CDD:180005"
gene 312962..313735
/locus_tag="RCA_01320"
/db_xref="GeneID:11860580"
CDS 312962..313735
/locus_tag="RCA_01320"
/note="COG1183 Phosphatidylserine synthase"
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--serine
O-phosphatidyltransferase"
/protein_id="YP_005299323.1"
/db_xref="GI:379022662"
/db_xref="GeneID:11860580"
/translation="MLKIRKSIITKPVPIIKLIPNFITLLGLVTGMSSIKFALDSRWE
LAVYCIIVAAIIDGIDGRIARMLNAASPFGAELDSLCDFANFGIAPAYLIYLWSFQQY
EYKVLSSSVMLLFIVCMALRLARFNVGIYQPTQDKKTEYFFTGLPAPCGALLALTPVM
IDFEIGTLLNINTRTHTITINIYLTIIALLLASRLPTISTKNLSIKPEYLSLAMILVA
IVIINLIIYPWYSMPLIAVIYILSIPICYFFKHRGYWSN"
misc_feature 312986..313726
/locus_tag="RCA_01320"
/note="Phosphatidylserine synthase [Lipid metabolism];
Region: PssA; COG1183"
/db_xref="CDD:31376"
misc_feature 313031..>313345
/locus_tag="RCA_01320"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 313736..314788
/locus_tag="RCA_01325"
/db_xref="GeneID:11860581"
CDS 313736..314788
/locus_tag="RCA_01325"
/note="COG1566 Multidrug resistance efflux pump"
/codon_start=1
/transl_table=11
/product="multidrug resistance protein A"
/protein_id="YP_005299324.1"
/db_xref="GI:379022663"
/db_xref="GeneID:11860581"
/translation="MLSVLQHAINKYTHHPFTKYVIIITLVIFIYFGYRIYVWANTQS
TNNAYIDADISNVSAEVSGVLIKLFVTNNTKVNKGDLIGEIDDRDYKAKLAALEASIE
ACKKNIEIIEQKTSIGRISLEQAAEKSKLTKISFDIATTDFTRVQELNKAKLASSKTL
DDARNNYQKAKTAYKQAQLDLDISKQNVALLDLEKSAAKEKFKELTENKKVTLRSLQS
TKLIAMVSGIFGNSSLAIGNYILPGRVLFSIVQDNTMYIQANFKETQIKKFKSGMKVK
IEFDALPKKVIYGKIRNIAPATGSKFSLIPPDNATGNFTKIVQRVPVLIDFESPSANL
VPGMSAIVSIRTDQKI"
misc_feature 313799..314782
/locus_tag="RCA_01325"
/note="Multidrug resistance efflux pump [Defense
mechanisms]; Region: EmrA; COG1566"
/db_xref="CDD:31754"
misc_feature 313901..314041
/locus_tag="RCA_01325"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
misc_feature 314393..314746
/locus_tag="RCA_01325"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(315276..315482)
/locus_tag="RCA_01330"
/db_xref="GeneID:11860582"
CDS complement(315276..315482)
/locus_tag="RCA_01330"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299325.1"
/db_xref="GI:379022664"
/db_xref="GeneID:11860582"
/translation="MIKTNDIIKVAVGASSVAQKALNSIVDKSCSIIEDKILKGHYVT
REEFEKLQILVIKLKKELAELTGK"
gene complement(315479..315721)
/locus_tag="RCA_01335"
/db_xref="GeneID:11860583"
CDS complement(315479..315721)
/locus_tag="RCA_01335"
/note="COG0271 Stress-induced morphogen (activity
unknown)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299326.1"
/db_xref="GI:379022665"
/db_xref="GeneID:11860583"
/translation="MSRIERIQAKLSVLKPYFQEIIDESYKHTSHYDGIHSHIKIRIS
AKILQGKSLIANHRTINNLLIDEFNNGLHALSIEVL"
misc_feature complement(315482..315709)
/locus_tag="RCA_01335"
/note="Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms]; Region: BolA; COG0271"
/db_xref="CDD:30620"
gene 315776..317017
/locus_tag="RCA_01340"
/db_xref="GeneID:11860584"
CDS 315776..317017
/locus_tag="RCA_01340"
/note="COG2200 FOG: EAL domain"
/codon_start=1
/transl_table=11
/product="phosphatidylserine decarboxylase"
/protein_id="YP_005299327.1"
/db_xref="GI:379022666"
/db_xref="GeneID:11860584"
/translation="MIKMAMSELITDYKDLQDEIDKLEKGVCFACRLVNYDEIEFIEQ
DKYFIIKDLAQIIENVSAELNILSKFKKIKQDRILFILNTIDSNLIKNFARKLYLFSQ
LYINEQKPAIYMNCCIASIKFPKVSNNAKEIEKTLNMLLAQNNNYYYREYSSTAHDLE
NIRKSNLQLNLLRQALANKTMRFAYQPIIDRSTMKIQYYECLLRIPDENGVYISVGPI
IPIAENKGLIFIIDQIVLDMTVNELAQNPNLILAVNISNIGTIDEALWEIAENLLKAY
NVRDRLIIEITETSFNEHYDKIILFINKLRKYGCKFALDDFGSGFTSFKQLQSLPIDI
IKIDSKYVRSITSDVQSRYFVERLIKISEDLGIATVAEFVENGEIAKFLIDLKVGGLQ
GNFYSEAKFDRVDVIPTESGI"
misc_feature 316316..316972
/locus_tag="RCA_01340"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 317175..318608
/gene="murC"
/locus_tag="RCA_01345"
/db_xref="GeneID:11860585"
CDS 317175..318608
/gene="murC"
/locus_tag="RCA_01345"
/EC_number="6.3.2.8"
/note="COG0773 UDP-N-acetylmuramate-alanine ligase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramate--L-alanine ligase"
/protein_id="YP_005299328.1"
/db_xref="GI:379022667"
/db_xref="GeneID:11860585"
/translation="MLLLELKKINQTLETIHFIGIGGVGMSGIAEILHNLGYKVQGSD
LVENYNTKRLESYGIKIFLGHVPQNITNVSYVVISSAINPDNPEIQEALERKIPIIRR
AEMLAELMRLKCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINNRSTNAYLG
SSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYKDFATLISAFRSFIINLPFYG
FAVCCIDHKIVRKLVDDITERKIVTYGIDSADAHIIAFNINTDIASSTFDVKISLPNV
LGTTIIEKITIPIPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAE
YNMASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDFMLCF
ADADILYITDIYAAGENPIEGITGQSLVDKITKNKYHDQVNFLATLDDAVGVIIDNAV
SGDVIIMMGAGNISSFANELPKKFGNL"
misc_feature 317193..318605
/gene="murC"
/locus_tag="RCA_01345"
/note="UDP-N-acetylmuramate--L-alanine ligase;
Provisional; Region: murC; PRK00421"
/db_xref="CDD:179018"
misc_feature 317217..317513
/gene="murC"
/locus_tag="RCA_01345"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 317532..318059
/gene="murC"
/locus_tag="RCA_01345"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 318147..318416
/gene="murC"
/locus_tag="RCA_01345"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 318605..319495
/gene="murB"
/locus_tag="RCA_01350"
/db_xref="GeneID:11860586"
CDS 318605..319495
/gene="murB"
/locus_tag="RCA_01350"
/EC_number="1.1.1.158"
/note="COG0812 UDP-N-acetylmuramate dehydrogenase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylenolpyruvoylglucosamine reductase"
/protein_id="YP_005299329.1"
/db_xref="GI:379022668"
/db_xref="GeneID:11860586"
/translation="MMTLPIVKGEYKKDYNLKHLTWFKVGGNAEIFFKPFDSEDLASF
LRQNKQKLPITTFGAGSNIIIRDGGIEGVTIKLGQSFSNIDFIDDNHLVVGSSCLNYN
LAKFCQANAISGFEFLVGIPGTIGGGAAMNAGAYGSEFKDIIVRIEAIDFAGNFLTFT
NEEIGFKYRSNNLPKNLIILKAIFKVNKGDSENILLRMNEIKATRSRTQPIKERTGGS
TFANPEGLKSWQLIDKAGLRGYRIGGASVSELHCNFMINNGDATAKDLEDLGNFVRQN
VFEDSGVKLNWEIKRIGKYV"
misc_feature 318605..319489
/gene="murB"
/locus_tag="RCA_01350"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional; Region: murB; PRK13905"
/db_xref="CDD:184385"
misc_feature 318689..319084
/gene="murB"
/locus_tag="RCA_01350"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 319175..319483
/gene="murB"
/locus_tag="RCA_01350"
/note="UDP-N-acetylenolpyruvoylglucosamine reductase,
C-terminal domain; Region: MurB_C; pfam02873"
/db_xref="CDD:111727"
gene 319564..320628
/gene="ddl"
/locus_tag="RCA_01355"
/db_xref="GeneID:11860587"
CDS 319564..320628
/gene="ddl"
/locus_tag="RCA_01355"
/EC_number="6.3.2.4"
/note="COG1181 D-alanine-D-alanine ligase and related
ATP-grasp enzymes"
/codon_start=1
/transl_table=11
/product="D-alanine--D-alanine ligase"
/protein_id="YP_005299330.1"
/db_xref="GI:379022669"
/db_xref="GeneID:11860587"
/translation="MHQYQIHWVEHSEVKILSNIVVRLEYKERGVKSITNRRATHDTV
SESKSIDYSGKKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFK
LQEIKPDIVFNCLHGTYGEDGCLSGLLNIMGIPYTHSGVLSSALAFDKIYSRSWFLTN
NINMAESIVVNKSDNIKIEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFANYDFPYGD
QVIIEKYIKGRELQVAVLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTN
LYHKLLIESEKIYKTMNCKGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAY
AGINFTNLIEEIIKAASFES"
misc_feature 319627..319719
/gene="ddl"
/locus_tag="RCA_01355"
/note="Rickettsial palindromic element RPE2 domain;
Region: RPE2; TIGR03774"
/db_xref="CDD:163486"
misc_feature 319720..320625
/gene="ddl"
/locus_tag="RCA_01355"
/note="D-alanine--D-alanine ligase; Reviewed; Region: ddl;
PRK01372"
/db_xref="CDD:179288"
misc_feature 319729..319980
/gene="ddl"
/locus_tag="RCA_01355"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature 320047..320607
/gene="ddl"
/locus_tag="RCA_01355"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene 320625..321428
/locus_tag="RCA_01360"
/db_xref="GeneID:11860588"
CDS 320625..321428
/locus_tag="RCA_01360"
/note="COG1589 Cell division septal protein"
/codon_start=1
/transl_table=11
/product="cell division protein ftsQ"
/protein_id="YP_005299331.1"
/db_xref="GI:379022670"
/db_xref="GeneID:11860588"
/translation="MRQKTISNKQKQTKKTNNISLRRKLGLMYKKAILALKVALMIFV
CLFVFTKYFAGVKTYLTTNIYKITTKLGFKLENVIIEGQQNVDEPTILKVLNASSGSP
IFALKLDAIRNNLKKNKWIKEVYVTRRLPNTVYIKLFEREPIAIWQINNQLFLVDEEG
YKISKNIQPFPHLLHVVGEGANIYAGKLVSELQKYPALINKTSAAVRLGDRRWDLNLE
GNISIKLPEKEFEEALKYIDALNKANKLFNQNYKVLDLRDRNKYYIEKY"
misc_feature 320685..321425
/locus_tag="RCA_01360"
/note="Cell division septal protein [Cell envelope
biogenesis, outer membrane]; Region: FtsQ; COG1589"
/db_xref="CDD:31777"
misc_feature 320847..321047
/locus_tag="RCA_01360"
/note="POTRA domain, FtsQ-type; Region: POTRA_1;
pfam08478"
/db_xref="CDD:149506"
misc_feature 321054..321395
/locus_tag="RCA_01360"
/note="Cell division protein FtsQ; Region: FtsQ;
pfam03799"
/db_xref="CDD:202772"
gene 321457..322692
/locus_tag="RCA_01365"
/db_xref="GeneID:11860589"
CDS 321457..322692
/locus_tag="RCA_01365"
/note="COG0849 Actin-like ATPase involved in cell
division"
/codon_start=1
/transl_table=11
/product="cell division protein FtsA"
/protein_id="YP_005299332.1"
/db_xref="GI:379022671"
/db_xref="GeneID:11860589"
/translation="MKEKISNFVTLDFGSSKIAVIAAYISKKGEIKVASQNLHHSKGI
KSGVISDLKNAETSIVSAIYALEKDCGKNIKKIILSLSGADTKSYYINYTMKVNGQTV
TQQDIKKLLQKALLEFKVKHQEIIHYFPLEFTLDNNSVENPIGMYGRELSCELHIIAA
SSNMLSNIVQCFAKCHVEVTNITLAIYASAISCLTNDEKNLGSLIIDMGDKTTSFGIF
FAGKLIYTGYINVGGFHISSDIAKVFGIDFVTAEKLKILYGNATIPLFEKDSIINMDD
FQVDTHHNLNTSVTLYQLAEVIRARAEEILSMVKAEYDKATKGQVEVLRVVITGGGSQ
LRGLKELSNRVFEKQSRIGKPEIIAGFIEDYNPAIYSATIGMLKIHALKQQKEFAHIR
FDENSSFFKKAFDWFRENV"
misc_feature 321475..322593
/locus_tag="RCA_01365"
/note="cell division protein FtsA; Region: ftsA;
TIGR01174"
/db_xref="CDD:162236"
misc_feature 321478..322035
/locus_tag="RCA_01365"
/note="Cell division protein FtsA; Region: FtsA;
smart00842"
/db_xref="CDD:197910"
misc_feature 322066..322494
/locus_tag="RCA_01365"
/note="Cell division protein FtsA; Region: FtsA;
pfam14450"
/db_xref="CDD:206616"
gene complement(322839..323072)
/locus_tag="RCA_01370"
/db_xref="GeneID:11860590"
CDS complement(322839..323072)
/locus_tag="RCA_01370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299333.1"
/db_xref="GI:379022672"
/db_xref="GeneID:11860590"
/translation="MVKTNDSYWAIKTIAKILTGEEKATDSHTVITIKTGNPYIVKAV
IEKTVITYNRFKIARTTSIPEWLLCNSISSMDK"
gene complement(324222..324695)
/locus_tag="RCA_01375"
/db_xref="GeneID:11860591"
CDS complement(324222..324695)
/locus_tag="RCA_01375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299334.1"
/db_xref="GI:379022673"
/db_xref="GeneID:11860591"
/translation="MFMIHNYLTEIWLIIGIICVVIEFFTVPSIGFLFLGLGALSNTL
VVYNYDINLQNQIMIFGILSLIWFSILYLPLKKYVYSTTAKAENYSDMVGKTVEVHSS
TISSHTIVGQVKWSGVIMNAHLAPNEEEAKTGDQLFIIKVKGNILVCSRHKPNHN"
misc_feature complement(324252..324617)
/locus_tag="RCA_01375"
/note="NfeD-like C-terminal, partner-binding; Region:
NfeD; cl00686"
/db_xref="CDD:207165"
gene complement(324679..325200)
/locus_tag="RCA_01380"
/db_xref="GeneID:11860592"
CDS complement(324679..325200)
/locus_tag="RCA_01380"
/note="COG3474 Cytochrome c2"
/codon_start=1
/transl_table=11
/product="cytochrome c"
/protein_id="YP_005299335.1"
/db_xref="GI:379022674"
/db_xref="GeneID:11860592"
/translation="MSGKELNKIVAAILLASLIAMMVGFVANILYKPNLQVLHRGYSV
AVHENSVASTSEAPAAVNIAELMKTANADNGREIAKKCLMCHSLDKDGPNKLGPHLWD
VAGRPKASIADYKYSSALSKLDGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKLQEIA
DIILFLKTYVHDT"
misc_feature complement(324685..325086)
/locus_tag="RCA_01380"
/note="Cytochrome c2 [Energy production and conversion];
Region: COG3474"
/db_xref="CDD:33277"
gene complement(326349..327215)
/gene="lpxC"
/locus_tag="RCA_01385"
/db_xref="GeneID:11860593"
CDS complement(326349..327215)
/gene="lpxC"
/locus_tag="RCA_01385"
/EC_number="3.5.1.-"
/note="COG0774 UDP-3-O-acyl-N-acetylglucosamine
deacetylase"
/codon_start=1
/transl_table=11
/product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase"
/protein_id="YP_005299336.1"
/db_xref="GI:379022675"
/db_xref="GeneID:11860593"
/translation="MQQSTLLKPVSCYGIGVHSGKRTQLTIEPAKENTGIIFIRTDIS
SENNYIEASYLNVSGTLLSTTISNDHKVQISTIEHLMAALWGCEIDNAIIKIDGPEVP
IMDGSSKLFVFMIECAGKKLQNAPKKYLKILKDIKVIHKDCELYCTPSNHMTVDLTID
FNSKAIGKQNLSFSNQESFTKNIADARTFGFIKDVNDLQSKGLALGASFENAIAINEE
DKILNPNGLRYEDEFVRHKLLDLFGDLYTSGTNIVSSIKGYKTSHALNNELLHKIFCD
TTSYKFVTASEL"
misc_feature complement(326355..327215)
/gene="lpxC"
/locus_tag="RCA_01385"
/note="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
deacetylase; Reviewed; Region: lpxC; PRK13186"
/db_xref="CDD:183882"
misc_feature complement(326382..327215)
/gene="lpxC"
/locus_tag="RCA_01385"
/note="UDP-3-O-acyl N-acetylglycosamine deacetylase;
Region: LpxC; pfam03331"
/db_xref="CDD:202596"
gene complement(327408..328556)
/locus_tag="RCA_01390"
/db_xref="GeneID:11860594"
CDS complement(327408..328556)
/locus_tag="RCA_01390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299337.1"
/db_xref="GI:379022676"
/db_xref="GeneID:11860594"
/translation="MTFKNDYKTIFFSLLGIFIFSCINAINFYNFQNFLLINKNLGGE
QINHINQTKLIGSIIAGFALTQLINKLSNTKIILISLSLLIICTINLILLNNYTLIKI
NFILINFGIFSYFTSITLHIIESVKGKKYFFLACIILLWAGGNLMVDLLNPFIKPTNN
TIVICALLYCINILTEFLHYNPTTHKLNLNSQFSSLIKNVELQLLTGFVVAYVTLDIL
WYYEAFALKKKLALINLRLILKYIFLLIGLSIIPICYILSKVNKYLANLSLTIILLIC
FILLPLHGTNKKLNILYIILIGNCLGAIFICNILILIDKFRDYELRTALFSYFSMCSI
GIYAGALSSHVPYGTINGSDFLFSVFAVVGSFVAYHFWYFIKYKLYRF"
gene 328982..331048
/locus_tag="RCA_01395"
/db_xref="GeneID:11860595"
CDS 328982..331048
/locus_tag="RCA_01395"
/note="COG1530 Ribonucleases G and E"
/codon_start=1
/transl_table=11
/product="ribonuclease E"
/protein_id="YP_005299338.1"
/db_xref="GI:379022677"
/db_xref="GeneID:11860595"
/translation="MNKKIIIDANFPTETRVVLLGQSNNIEDIEFQTTVRQQNKGNIY
LAQVTRIEPSLQAVFIEYGMDKSGFLPFSEIHPNYYNLPASERNFPVNAFPEIALANI
TVEDDQEKPIAIYDSLVDSEEIDLKTIEDLVESKLQSELNLEGADDIEIIQSSIDSNI
PQYKQYKVQEVIRKNQILLVQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGIS
RKISNVEERKRLKDILNKIVSGNSYSVIVRTAGRGSSSLDLKKDYNYLVRLWNKIRKS
TIKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVVIQGQEAYDDAAKFMQDLLPSELSKL
KAHKNKTPIFTQFQVEEQLVKLYQPVVTLPSGGYIVINPTEALISIDVNSGKSTSEKN
IEETALKTNLEAAKAVAKQVKLRDLSGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRA
RIQTGNISQFGLLEFSRQRLRSSFLETNSSICSHCNGKGVIRANDANAMLILRTIENE
IFEERIDVINVFTNIASVIYLLNNKRAEIKFIEEKYNIKLNFYSDPNATSDSYSIEKV
KLLKKNNNNVNSVKPVIQNHSADYTEDEAQKEQLRKNKHKWKTVNNNVSVEEKNKKLE
TKQEVEQSTQNVEVVNEESQIIENDVVTAEVPATKTLKRRYRNKKSNKKHAANTATDT
AKNADS"
misc_feature 329087..>329221
/locus_tag="RCA_01395"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(329126..329128,329156..329158,329186..329188,
329192..329194)
/locus_tag="RCA_01395"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature <329468..329590
/locus_tag="RCA_01395"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature 329576..330394
/locus_tag="RCA_01395"
/note="Ribonuclease E/G family; Region: RNase_E_G;
pfam10150"
/db_xref="CDD:150783"
gene 331255..332271
/locus_tag="RCA_01400"
/db_xref="GeneID:11860596"
CDS 331255..332271
/locus_tag="RCA_01400"
/note="COG1612 Uncharacterized protein required for
cytochrome oxidase assembly"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase assembly protein"
/protein_id="YP_005299339.1"
/db_xref="GI:379022678"
/db_xref="GeneID:11860596"
/translation="MQQSLITKWLSISCIMVIAMIVIGGITRLTGSGLSIVEWRPITG
ILPPLSFESWQVEFAKYKAFPEYNYVNYRMTLSQFKFIYLLEFIHRLLGRITALIYIV
PLIYFYFKGIIKNRDIAPYIIVLLLLYLQGFMGWYMVKSGLLNNPSVSHLRLAFHLII
AVIIYHILFYQLIKNRCDILLILSQTDLKLPLRFSSVAITVIYLQIFLGALVAGLDAG
LIYNSFPLMGDNFIPTAIKDNFFDLKNWYDPVFIQCIHRLGGYSVFLVVMSLATYLLK
IEHPKLNKIAYFLIIALLMQISTGIITLLYSVPIIIASTHQFFAIVLLSVIIWCYFLI
KTSK"
misc_feature 331255..332256
/locus_tag="RCA_01400"
/note="Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification, protein
turnover, chaperones]; Region: CtaA; COG1612"
/db_xref="CDD:31800"
misc_feature 331279..332241
/locus_tag="RCA_01400"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; cl15852"
/db_xref="CDD:210252"
gene 332268..333179
/locus_tag="RCA_01405"
/db_xref="GeneID:11860597"
CDS 332268..333179
/locus_tag="RCA_01405"
/note="COG0564 Pseudouridylate synthases, 23S
RNA-specific"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
C"
/protein_id="YP_005299340.1"
/db_xref="GI:379022679"
/db_xref="GeneID:11860597"
/translation="MIIDVNTPISSRLDKYLKRLYPLLTQGVIEKALRQKQIIVNARK
AEASLRVIDGDKIFISDKFNLPVKQPEKLVFTDAEIKLAKKITTDYLIYEDDNLIAIN
KPAGLATQGGSKINLSIDSALKYLNYKGADFKLVHRLDKETSGLLLIAKNYLSSIKFH
DAFKDKLVVKTYFAVTYGKPIKNVGEVRSNIEKSKGSTRKITDIDSENGKLAITYYKL
LKSLDNNLFLIEFTPITGKMHQLRLHAKLLGCPILGDDKYGNKEIMPYSQYMFLHANH
ICLSEKVFGTEINLEAKLPFYFTRRLT"
misc_feature 332271..333155
/locus_tag="RCA_01405"
/note="Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]; Region:
RluA; COG0564"
/db_xref="CDD:30910"
misc_feature 332301..332492
/locus_tag="RCA_01405"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(332301..332303,332337..332342,332346..332351,
332355..332360,332367..332372,332376..332378,
332397..332402,332403..332417,332421..332423)
/locus_tag="RCA_01405"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 332559..333104
/locus_tag="RCA_01405"
/note="Pseudouridine synthase, RsuA/RluD family; Region:
PseudoU_synth_RluCD_like; cd02869"
/db_xref="CDD:211346"
misc_feature order(332676..332687,332991..332993)
/locus_tag="RCA_01405"
/note="active site"
/db_xref="CDD:211346"
gene 333336..334517
/locus_tag="RCA_01410"
/db_xref="GeneID:11860598"
CDS 333336..334517
/locus_tag="RCA_01410"
/note="COG1680 Beta-lactamase class C and other penicillin
binding proteins"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein 4*"
/protein_id="YP_005299341.1"
/db_xref="GI:379022680"
/db_xref="GeneID:11860598"
/translation="MIRRYLLLLLFLINNCINCFADIQQRINEAEKEYLSNRFLNAVF
MFADDYKPLLTGAKGIFALNGEQLKANEMMPIASATKPFTAAGILKLQEQELLNINDK
IYKYLDPEMWGGKVPDWAYKISIHNLLTHSSGIAEYFSFVKLDFNMSKKEIHKKILQF
VSSKPLEISIGKKFKYSNTNFVILGMIIEKVAKKDLGNFFYDEFFKPLNMKSTSFASY
SEAARIQKNVISSNYPVRYFLTPNNSNKPIFTPVTADFLAVPYADGGIISTPNDLVKW
YRALNDGKILSKKSYKLMTTKYFLAKDIDGRKSYMGYGIFLTDLDSKHLMIHYTGKAL
GIQSEVGYVLPNNLYFAILSNTMIKIPEAEKDKIDMKNPLNQLGIIYFRDAIIGAAIK
N"
misc_feature 333396..334481
/locus_tag="RCA_01410"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature 333414..334433
/locus_tag="RCA_01410"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene 334518..335339
/locus_tag="RCA_01415"
/db_xref="GeneID:11860599"
CDS 334518..335339
/locus_tag="RCA_01415"
/note="COG0708 Exonuclease III"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III"
/protein_id="YP_005299342.1"
/db_xref="GI:379022681"
/db_xref="GeneID:11860599"
/translation="MKIVTWNINSLRLRIDLLRKLAHEHKPDIILLQETKVADSLFPL
EVIKNIGYEHIIYSGQKSYNGVAIISKFPLNNVFSLELYNGDKRHIAATVNDIEVHNF
YVPAGGDIPDIEINLKFKHKLEYVRLMQEWLTVNRTKNDKIIIVGDLNIAPHEHDVWS
SRQLRNVISHTDIERSLLVGLQNSLGFIDSSRHFISLDEKFYTWWSYRNIDWKKSNRG
RRLDHIWVSNNLKDALFSINLLSEARDWVPPSDHVPYFVNFNFDGVMPRACNRIP"
misc_feature 334518..335294
/locus_tag="RCA_01415"
/note="Escherichia coli exonuclease III (ExoIII) and
Neisseria meningitides NExo-like subfamily of the ExoIII
family purinic/apyrimidinic (AP) endonucleases; Region:
ExoIII-like_AP-endo; cd09086"
/db_xref="CDD:197320"
misc_feature order(334536..334538,334617..334619,334824..334826,
334833..334835,334959..334961,334965..334967,
335271..335273)
/locus_tag="RCA_01415"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197320"
misc_feature order(334536..334538,334617..334619,334824..334826,
334959..334961,334965..334967,335181..335183,
335268..335273)
/locus_tag="RCA_01415"
/note="putative catalytic site [active]"
/db_xref="CDD:197320"
misc_feature order(334542..334547,334551..334559,334617..334619,
334698..334703,334824..334826,334833..334835,
334839..334841,334869..334871,334959..334961,
334965..334967,335127..335129,335136..335141,
335172..335174,335178..335183,335259..335264,
335271..335273)
/locus_tag="RCA_01415"
/note="active site"
/db_xref="CDD:197320"
misc_feature order(334542..334544,334617..334619,335268..335273)
/locus_tag="RCA_01415"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197320"
misc_feature order(334542..334547,334551..334559,334698..334703,
334824..334826,334833..334835,334839..334841,
334869..334871,335136..335141,335259..335264)
/locus_tag="RCA_01415"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:197320"
misc_feature order(334824..334826,334833..334835,334959..334961,
334965..334967,335127..335129,335172..335174,
335178..335180,335271..335273)
/locus_tag="RCA_01415"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197320"
misc_feature order(334824..334826,334959..334961,334965..334967,
335271..335273)
/locus_tag="RCA_01415"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197320"
gene 335407..336396
/locus_tag="RCA_01420"
/db_xref="GeneID:11860600"
CDS 335407..336396
/locus_tag="RCA_01420"
/note="COG1071 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
alpha subunit"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase e1 component subunit
alpha"
/protein_id="YP_005299343.1"
/db_xref="GI:379022682"
/db_xref="GeneID:11860600"
/translation="MDIKLGKYKPIKEEYIKSFKNMILLRRFEEKCSQLYGMGEIGGF
CHLYIGQEAVISAVDIVKKKGDSTITSYRDHAHVILAGTEPKYVLAELMGRATGCSKG
KGGSMHLFDVPNKFYGGHGIVGAQVPIGTGLAFAEKYNGTNNICFTFLGDGAVNQGQV
YEAFNMAALWGLAVVYIIENNEYSMGTSVVRSTFMRDLYKKGESFGIKGFQLDGMNFE
EMYDGTKQAAEYVRETSQPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKKRDPLVII
RKTILDDKYATEADLKEIEQSVKEILKEAVEFSENSPLPDEGELYTNIFHSMV"
misc_feature 335440..336384
/locus_tag="RCA_01420"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:188297"
misc_feature 335461..336330
/locus_tag="RCA_01420"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:48163"
misc_feature order(335530..335532,335686..335688,335767..335772,
335863..335865,335869..335880,335887..335889,
335899..335901,335911..335913,335956..335967,
336007..336009,336022..336024,336175..336177)
/locus_tag="RCA_01420"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(335620..335625,335767..335769,335773..335775,
335857..335868,335947..335949,335953..335955,
336154..336156)
/locus_tag="RCA_01420"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48163"
misc_feature order(335752..335754,335758..335760,335764..335766,
335779..335781,335788..335793,335800..335805,
335809..335814,335821..335823,335878..335883,
335899..335904,335911..335913)
/locus_tag="RCA_01420"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(336139..336159,336163..336165,336166..336192,
336214..336222)
/locus_tag="RCA_01420"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:48163"
gene 336524..337510
/locus_tag="RCA_01425"
/db_xref="GeneID:11860601"
CDS 336524..337510
/locus_tag="RCA_01425"
/EC_number="1.2.4.1"
/note="COG0022 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
beta subunit"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_005299344.1"
/db_xref="GI:379022683"
/db_xref="GeneID:11860601"
/translation="MQITVREALRDAMQEEMIRDDKVFILGEEVAEYQGAYKVTQGLL
EQFGPKRVIDTPITEYGFAGLAVGAALAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHY
MSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYNAEDHKGLMITA
IRDDNPVIFLENEILYGHSFDVPEETIEPIPFGKAKTLIEGNSVTIVTFSIQVKLALD
AANVLQDDNNIDCEVIDLRTIKPLDTQTIIESVKKTNRLVVVEEGWFFAGVGASIASI
VMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLALPSESDVIEAVKKVCYYSV"
misc_feature 336524..337507
/locus_tag="RCA_01425"
/note="pyruvate dehydrogenase subunit beta; Validated;
Region: PRK09212"
/db_xref="CDD:169719"
misc_feature 336542..337042
/locus_tag="RCA_01425"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(336584..336586,336590..336592,336608..336610,
336674..336676,336683..336685,336689..336706,
336713..336718,336722..336730,336785..336787,
336794..336799,336824..336829,336893..336895,
336902..336904,336947..336952,337013..337018)
/locus_tag="RCA_01425"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(336605..336607,336692..336694,336698..336700,
336776..336778,336785..336787)
/locus_tag="RCA_01425"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(336608..336610,336683..336685,336689..336700,
336782..336787,336791..336793,336806..336808,
336818..336820,336827..336829,336893..336895,
336899..336904,336926..336928,336932..336937,
336941..336943)
/locus_tag="RCA_01425"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 337100..337474
/locus_tag="RCA_01425"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene complement(337736..339565)
/locus_tag="RCA_01430"
/db_xref="GeneID:11860602"
CDS complement(337736..339565)
/locus_tag="RCA_01430"
/note="COG1217 Predicted membrane GTPase involved in
stress response"
/codon_start=1
/transl_table=11
/product="GTP-binding protein"
/protein_id="YP_005299345.1"
/db_xref="GI:379022684"
/db_xref="GeneID:11860602"
/translation="MQSIRNIAIIAHVDHGKTTLVDNMLKQSGTFRANQAVAERAMDS
NDLERERGITILAKCTALMWNDIRINIVDTPGHADFGGEVERILSMVDGVVLLVDASE
GPMPQTKFVLSKALNLSLKPIVVINKIDRDDQRIKEVIDDVFELFVALEANNDQLDFP
IVYASGRAGRAALTFDDKINPLDNLADDLSPLFDLIVTHVPTPVADDKAPFSMLVTTR
EYNSFFGRVLTGRVQSGTVKINQNVKVLNRENKVLENGRITKILAFRGLERIAIDEAT
AGDIIAMAGLENANVADTICSPEVTQAIPSLPIDPPTLSITFSVNDSPLAGSEGTKVT
SSLIGNRLMRELESNVALKVTEAAEKNTFQVAGRGELQLGILIETMRREGFELSISRP
EVLFQTDENGNKQEPMEEIQVDVDDDYVGVVVKSLALRKAEMTDMRPSGGGKTRVTFI
GPSRGLIGYHSQFLTETRGTGIINRIFHGYADYKGNIEGRRNGVLISNSDGEAVAYAL
WNLEARGKMFIKPSDKVYRGMIIGEHNRDNDLEVNPLKAKQLSNVRAAGKDEAIRLTP
PMLLTLEQAISYIQDDERVEVTPKSIRLRKALLDPNDRKRAVK"
misc_feature complement(338957..339559)
/locus_tag="RCA_01430"
/note="Tyrosine phosphorylated protein A (TypA)/BipA
family belongs to ribosome-binding GTPases; Region:
TypA_BipA; cd01891"
/db_xref="CDD:206678"
misc_feature complement(337748..339556)
/locus_tag="RCA_01430"
/note="GTP-binding protein TypA/BipA; Region: TypA_BipA;
TIGR01394"
/db_xref="CDD:162336"
misc_feature complement(339512..339535)
/locus_tag="RCA_01430"
/note="G1 box; other site"
/db_xref="CDD:206678"
misc_feature complement(order(339140..339142,339152..339154,
339260..339265,339332..339337,339389..339394,
339488..339493,339500..339502,339509..339514,
339524..339526,339530..339532))
/locus_tag="RCA_01430"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206678"
misc_feature complement(order(339065..339073,339176..339178,
339182..339187,339509..339526))
/locus_tag="RCA_01430"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206678"
misc_feature complement(339392..339427)
/locus_tag="RCA_01430"
/note="Switch I region; other site"
/db_xref="CDD:206678"
misc_feature complement(339404..339406)
/locus_tag="RCA_01430"
/note="G2 box; other site"
/db_xref="CDD:206678"
misc_feature complement(339338..339349)
/locus_tag="RCA_01430"
/note="G3 box; other site"
/db_xref="CDD:206678"
misc_feature complement(339287..339343)
/locus_tag="RCA_01430"
/note="Switch II region; other site"
/db_xref="CDD:206678"
misc_feature complement(339176..339187)
/locus_tag="RCA_01430"
/note="G4 box; other site"
/db_xref="CDD:206678"
misc_feature complement(339065..339073)
/locus_tag="RCA_01430"
/note="G5 box; other site"
/db_xref="CDD:206678"
misc_feature complement(338675..338935)
/locus_tag="RCA_01430"
/note="BipA_TypA_II: domain II of BipA (also called TypA)
having homology to domain II of the elongation factors
(EFs) EF-G and EF-Tu. BipA is a highly conserved protein
with global regulatory properties in Escherichia coli.
BipA is phosphorylated on a...; Region: BipA_TypA_II;
cd03691"
/db_xref="CDD:58082"
misc_feature complement(338114..338350)
/locus_tag="RCA_01430"
/note="BipA_TypA_C: a C-terminal portion of BipA or TypA
having homology to the C terminal domains of the
elongation factors EF-G and EF-2. A member of the ribosome
binding GTPase superfamily, BipA is widely distributed in
bacteria and plants. BipA is a highly...; Region:
BipA_TypA_C; cd03710"
/db_xref="CDD:58063"
gene 340022..340240
/locus_tag="RCA_01435"
/db_xref="GeneID:11860603"
CDS 340022..340240
/locus_tag="RCA_01435"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299346.1"
/db_xref="GI:379022685"
/db_xref="GeneID:11860603"
/translation="MNNTEITNKQMYFLYMILQNIPMLQTNYKIQAVWVKKDDKEYIQ
EACNFLYDFNEKHEIYVELEDPATEIYD"
gene 340547..341053
/locus_tag="RCA_01440"
/db_xref="GeneID:11860604"
CDS 340547..341053
/locus_tag="RCA_01440"
/note="COG2825 Outer membrane protein"
/codon_start=1
/transl_table=11
/product="pyruvate dehydrogenase subunit beta"
/protein_id="YP_005299347.1"
/db_xref="GI:379022686"
/db_xref="GeneID:11860604"
/translation="MITEAQNVPIKEDNFKVRVAVADVQSILEGSIAIKDLRNKIEKL
NHKIQEDIAAKEAEFKPLEEQLLNERSNLSETEFEHKVNEFNAKVSHVRKEIQIKKTK
LEQAHAEAMSRVHGTTITIISELAEKYNLNLVIPSAQVLYAKNNLNITSEVTFMLNER
LKEVTINY"
misc_feature 340601..341020
/locus_tag="RCA_01440"
/note="Outer membrane protein (OmpH-like); Region: OmpH;
smart00935"
/db_xref="CDD:198003"
gene 341203..342654
/locus_tag="RCA_01445"
/db_xref="GeneID:11860605"
CDS 341203..342654
/locus_tag="RCA_01445"
/EC_number="1.1.1.42"
/note="COG0473 Isocitrate/isopropylmalate dehydrogenase"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase"
/protein_id="YP_005299348.1"
/db_xref="GI:379022687"
/db_xref="GeneID:11860605"
/translation="MAEFTPITIAYGDGIGPEIMEAVLYILREAEARIRLETIEIGEK
LYKKHYTSGISEESWASIQRTGIILKAPITTPQGGGYKSLNVTIRKTLQLFANIRPSV
SFYPFTRTLHPNLNLTIIRENEEDLYAGIEYRQTHNMYESVKLISHTGCEKIIRYAFE
YAVKNNRKKVTCLSKDNIMKFSDGIFHKVFNEIAKEYLQINNEHYIIDIGVARLATKP
EMFDVIVTSNLYGDIISDVAAEISGSVGLAGSANVGQHYAMFEAVHGSAPDIAGQDIA
NPSGLLNAAIMMLVHIGQCDVASLIENAWKKTIEDGIHTADIYNDQTSSKKVGTKEFV
EEVVKRLGQLPVELSKADYPLIAKKQESNIDYKIDTKEVKKLVGTDIFVNMNVLSAHD
IADKINKLDIGNFELKTISSKGLKLWPRDARFETVADHWCCRFMNKDGTEINYLDITR
LLEALSKANITFIKVENLFEFDGVAGYSLAQGE"
misc_feature 341203..342651
/locus_tag="RCA_01445"
/note="isocitrate dehydrogenase; Validated; Region:
PRK09222"
/db_xref="CDD:181708"
misc_feature 341218..342234
/locus_tag="RCA_01445"
/note="Isocitrate/isopropylmalate dehydrogenase [Amino
acid transport and metabolism]; Region: LeuB; COG0473"
/db_xref="CDD:30821"
gene 342830..343111
/locus_tag="RCA_01450"
/db_xref="GeneID:11860606"
CDS 342830..343111
/locus_tag="RCA_01450"
/note="COG1320 Multisubunit Na+/H+ antiporter, MnhG
subunit"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
G"
/protein_id="YP_005299349.1"
/db_xref="GI:379022688"
/db_xref="GeneID:11860606"
/translation="MGILLVIIGLFAIFSGIIGFFRFSDFYPKLHAASVIESFGVPIC
LIGFACIKADIINFVKLILAALLILLLNPVATHALGKASLLSMSFPRKQ"
misc_feature <342902..343108
/locus_tag="RCA_01450"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12674"
/db_xref="CDD:183672"
gene 343278..344327
/locus_tag="RCA_01455"
/db_xref="GeneID:11860607"
CDS 343278..344327
/locus_tag="RCA_01455"
/note="COG1563 Predicted subunit of the Multisubunit
Na+/H+ antiporter"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
B"
/protein_id="YP_005299350.1"
/db_xref="GI:379022689"
/db_xref="GeneID:11860607"
/translation="MNIALNFNLSNYLLNLIAFLLILISIKIIFAKDLLNAVIASSVF
SLLIGISYLIMDAPDVAMTEAALGACLSTCVYLNLLCTLPPDLKNIENTNIIPASLIC
LVFVIILTYMGLELPNYGDDNAPLHMHSSKYYIENTTNDIGIPSLVAAILASYRGYDT
LGETSVILIAGIAVLLVFSKKIEGDDVSKDVIPQLDRGIRKNINWMPWRDYGMTKIIK
YITSFIIPYIILYSIYIQLNGESSPGGGFQAGVIFVSSFIAYDLVYGNQKLNRYFSPN
VLIYIAILGVAIYVIVGTISLFFNDNYLNYYSLTNFINDKLLAQHIGIFIVETVIGVT
VAAIMYLIYNLFNHE"
misc_feature 343374..344324
/locus_tag="RCA_01455"
/note="putative monovalent cation/H+ antiporter subunit B;
Reviewed; Region: PRK12507"
/db_xref="CDD:183562"
misc_feature <343374..343544
/locus_tag="RCA_01455"
/note="Predicted subunit of the Multisubunit Na+/H+
antiporter [Inorganic ion transport and metabolism];
Region: COG1563"
/db_xref="CDD:31751"
misc_feature 343923..344306
/locus_tag="RCA_01455"
/note="Domain of unknown function (DUF4040); Region:
DUF4040; cl00676"
/db_xref="CDD:207161"
gene 344320..344967
/locus_tag="RCA_01460"
/db_xref="GeneID:11860608"
CDS 344320..344967
/locus_tag="RCA_01460"
/codon_start=1
/transl_table=11
/product="heme exporter protein B"
/protein_id="YP_005299351.1"
/db_xref="GI:379022690"
/db_xref="GeneID:11860608"
/translation="MNNLFVLIKREFIVQNRINNIIKYLVIFCLFCIISTVLVNSERD
INKFGLIFSVICLLISLINFSSIIFKSDLEDGSLELLLSIVSYEEIILAKFFAIFISS
TVGLVFILPIIYIFFDQTLLEIIFFFMSVWLMLGLSSSLVVLSGSVQCYFKKNANFVG
TFIMPLLIPDIIMTGLILQDNNLQLIFIMIGINLVFLPISFFLSSYLIKNIYNIT"
gene 345041..345454
/locus_tag="RCA_01465"
/db_xref="GeneID:11860609"
CDS 345041..345454
/locus_tag="RCA_01465"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299352.1"
/db_xref="GI:379022691"
/db_xref="GeneID:11860609"
/translation="MWQALRRLIAANPMGFFLWSIITKWYLIIAVASLITLYYTVLGL
KKIGFIDYFTKTMVEILDVSKAVAQNCTTKLGPDWNHLVSFWNCLSEPGEYQYEERIG
SKELEDAINKLRPRQVDSVADAEHPIINPYEQLSK"
misc_feature 345041..345448
/locus_tag="RCA_01465"
/note="Protein of unknown function (DUF2670); Region:
DUF2670; pfam10875"
/db_xref="CDD:151324"
gene 345514..346047
/locus_tag="RCA_01470"
/db_xref="GeneID:11860610"
CDS 345514..346047
/locus_tag="RCA_01470"
/note="COG0723 Rieske Fe-S protein"
/codon_start=1
/transl_table=11
/product="ubiquinol-cytochrome c reductase iron-sulfur
subunit"
/protein_id="YP_005299353.1"
/db_xref="GI:379022692"
/db_xref="GeneID:11860610"
/translation="MSDTEDNKNKQTTRRDFMVLTASSVAVVGAACALLPLIDSLNPS
ADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAAARAVKMSELIDPETD
EARIKAGYDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLN
LAVPPYTFISDKKIRIG"
misc_feature 345550..346044
/locus_tag="RCA_01470"
/note="ubiquinol-cytochrome c reductase, iron-sulfur
subunit; Region: Rieske_proteo; TIGR01416"
/db_xref="CDD:188138"
misc_feature 345667..346044
/locus_tag="RCA_01470"
/note="Iron-sulfur protein (ISP) component of the bc(1)
complex family, Rieske domain; The Rieske domain is a
[2Fe-2S] cluster binding domain involved in electron
transfer. The bc(1) complex is a multisubunit enzyme found
in many different organisms including...; Region:
Rieske_cytochrome_bc1; cd03470"
/db_xref="CDD:58540"
misc_feature order(345871..345873,345877..345882,345928..345930,
345937..345939,345943..345945)
/locus_tag="RCA_01470"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58540"
gene 346056..347252
/locus_tag="RCA_01475"
/db_xref="GeneID:11860611"
CDS 346056..347252
/locus_tag="RCA_01475"
/note="COG1290 Cytochrome b subunit of the bc complex"
/codon_start=1
/transl_table=11
/product="cytochrome b"
/protein_id="YP_005299354.1"
/db_xref="GI:379022693"
/db_xref="GeneID:11860611"
/translation="MNEDITTKKPNAIIEWIDYRLPIFSFLKHFSHYQTPKNLSYLWN
LGSIAGIALVIQIITGVVLAMHYTPHVDHAFDSVERIMRNVNYGWLLRYTHAVGASMF
FAAVYLHIARGLYYGSYKTPRELLWHIGIIIFLTMMATAFMGYVLPWGQMSYWGATVI
TNLFSAIPLIGESIVTWLWGGFSVDNPTLNRFFSLHYLLPFIIVALVMLHLVALHQHG
SNNPKGIDVKSSQDTIPFHPYYTVKDFVGFGVYFMIFAYFIFYAPNYLGHPDNYIQAN
PLVTPAHIVPEWYFLPFYAILRAVPSKLGGVLLMFGSIFVLFLLPWFDTSKVRSSNYR
PIYRIAFWIFMADCLLLGYLGGQPVEEPYIIISRFAACYYFFHFLVALPLIGKYEKPL
PLPGQL"
misc_feature 346116..346715
/locus_tag="RCA_01475"
/note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: Cytochrome_b_N;
cd00284"
/db_xref="CDD:29347"
misc_feature 346119..347207
/locus_tag="RCA_01475"
/note="cytochrome b; Provisional; Region: CYTB; MTH00191"
/db_xref="CDD:177239"
misc_feature order(346140..346145,346194..346196,346203..346205,
346686..346688,346710..346712)
/locus_tag="RCA_01475"
/note="Qi binding site; other site"
/db_xref="CDD:29347"
misc_feature order(346143..346148,346158..346166,346182..346187,
346194..346199,346206..346208,346278..346280,
346323..346325,346332..346337,346344..346349,
346353..346358,346362..346367,346374..346376,
346395..346412,346422..346427,346434..346439,
346446..346448,346455..346460,346488..346490,
346500..346520,346530..346535,346557..346559,
346713..346715)
/locus_tag="RCA_01475"
/note="intrachain domain interface; other site"
/db_xref="CDD:29347"
misc_feature order(346146..346151,346155..346157,346164..346166,
346227..346229,346239..346241,346248..346253,
346278..346283,346290..346295,346302..346316,
346320..346328,346335..346337,346419..346421,
346698..346703)
/locus_tag="RCA_01475"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29347"
misc_feature order(346182..346184,346191..346196,346200..346205,
346359..346361,346371..346373,346380..346385,
346389..346391,346431..346436,346443..346448,
346452..346457,346674..346676,346683..346688,
346695..346697,346710..346715)
/locus_tag="RCA_01475"
/note="heme bH binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(346212..346214,346221..346226,346233..346238,
346242..346247,346254..346256,346287..346289,
346329..346331,346338..346343,346350..346352,
346473..346478,346485..346490,346494..346499,
346641..346646,346653..346655)
/locus_tag="RCA_01475"
/note="heme bL binding site [chemical binding]; other
site"
/db_xref="CDD:29347"
misc_feature order(346458..346460,346467..346472,346479..346484,
346521..346523,346530..346535,346545..346547,
346629..346631,346638..346640)
/locus_tag="RCA_01475"
/note="Qo binding site; other site"
/db_xref="CDD:29347"
misc_feature 346722..347165
/locus_tag="RCA_01475"
/note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is
a subunit of cytochrome bc1, an 11-subunit mitochondrial
respiratory enzyme. Cytochrome b spans the mitochondrial
membrane with 8 transmembrane helices (A-H) in eukaryotes.
In plants and cyanobacteria; Region: cytochrome_b_C;
cd00290"
/db_xref="CDD:29371"
misc_feature order(346722..346730,346734..346760,346767..346775,
346779..346784,346791..346793,346800..346805,
346812..346814,346821..346826,346833..346838,
346842..346844,346860..346862,346869..346874,
347034..347039,347049..347051,347055..347057)
/locus_tag="RCA_01475"
/note="interchain domain interface [polypeptide binding];
other site"
/db_xref="CDD:29371"
misc_feature order(346722..346727,346740..346742,346749..346757,
346761..346763,346773..346775,346782..346787,
346794..346799,346806..346808,346818..346823,
346827..346835,346842..346844,346857..346859,
346863..346868,346872..346886,346890..346898,
346905..346907,346911..346922,346965..346967,
346995..346997,347004..347009,347013..347021,
347025..347027)
/locus_tag="RCA_01475"
/note="intrachain domain interface; other site"
/db_xref="CDD:29371"
misc_feature order(346761..346763,346785..346787)
/locus_tag="RCA_01475"
/note="Qi binding site; other site"
/db_xref="CDD:29371"
misc_feature order(346905..346907,346911..346916,346923..346925,
346932..346937,346983..346985)
/locus_tag="RCA_01475"
/note="Qo binding site; other site"
/db_xref="CDD:29371"
gene 347437..348192
/locus_tag="RCA_01480"
/db_xref="GeneID:11860612"
CDS 347437..348192
/locus_tag="RCA_01480"
/note="COG2857 Cytochrome c1"
/codon_start=1
/transl_table=11
/product="cytochrome c1, heme protein"
/protein_id="YP_005299355.1"
/db_xref="GI:379022694"
/db_xref="GeneID:11860612"
/translation="MKIKLIISIIILIISSVCLAGQEALPLHKMKWSFDGVFGTVNRE
AAQRGFQVYKEVCSVCHGLNNLYYRNLKDIGFSDDEIKEIAKVYTVKDGPNDAGEMFD
RPALPSDRFVTPYPNEQAARSANNGAYPPDLSLIIKARHDGANYIYSLLTGYKEPPAD
FKLMQGTHYNPYFPGHQIAMPPPLTDGQVTYMDGTNASVEQMSHDVTVFLQWAAEPEM
EHRKSMGLKVMMFLVVFTIFFYIAKNRIWSNLK"
misc_feature 347530..348186
/locus_tag="RCA_01480"
/note="Cytochrome C1 family; Region: Cytochrom_C1;
pfam02167"
/db_xref="CDD:190231"
gene 348860..349363
/locus_tag="RCA_01485"
/db_xref="GeneID:11860613"
CDS 348860..349363
/locus_tag="RCA_01485"
/note="COG0071 Molecular chaperone (small heat shock
protein)"
/codon_start=1
/transl_table=11
/product="small heat shock protein"
/protein_id="YP_005299356.1"
/db_xref="GI:379022695"
/db_xref="GeneID:11860613"
/translation="MLKNVRLYIPSIAAIILSSNIAMANKNYDAGHATALRQVADLID
NQMTNIDNLFRNRLSLYEYNSIKSNFITKDKQYIVVMEVPGFEKSQIKVKVSRNKLFI
TGNIEEKNKSDDLDNYMNKNFNYVISLYEDVDQTNISSNLKNGILTIILPRTEVKEQN
AREIPIN"
misc_feature 348938..349360
/locus_tag="RCA_01485"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature 349064..349318
/locus_tag="RCA_01485"
/note="Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins (Hsps).
sHsps are small stress induced proteins with monomeric
masses between 12 -43 kDa, whose common feature is the
Alpha-crystallin domain (ACD). sHsps are generally...;
Region: ACD_sHsps-like; cd06464"
/db_xref="CDD:107221"
misc_feature order(349064..349078,349097..349099,349103..349105,
349109..349114,349232..349234,349292..349297)
/locus_tag="RCA_01485"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107221"
gene complement(349490..350542)
/gene="prfB"
/locus_tag="RCA_01490"
/db_xref="GeneID:11860614"
CDS complement(349490..350542)
/gene="prfB"
/locus_tag="RCA_01490"
/note="COG1186 Protein chain release factor B"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_005299357.1"
/db_xref="GI:379022696"
/db_xref="GeneID:11860614"
/translation="MRGLFDIKTATKRLKELAELTTNPDLWNDQVNAQTLLREQSTLE
EKLNTLNKLKSNLKDTLELEALAETENDLETLAQVKQDLKNLSIIAAKFETEYLFSGE
ADCNNCFLEINAGAGGTESHDWASIMMRMYLRFAERLDFKTEIINMINGEEAGIKSCT
IRIIGKRAYGWFKTEAGVHRLVRISPFNAAGKRMTSFASSWVYPEIDDNISITIDDKD
LRIDTFRASGAGGQHVNTTDSAVRITHIPTGTVTQCQSDRSQHKNKAQAMRMLKAKLY
ELEMQKRTDNINEQNAAKTDNSWGHQIRSYILQPYQMVKDLRTDYETSDTRGVLDGNL
EEFVSASLAMNVGSKR"
misc_feature complement(349496..350542)
/gene="prfB"
/locus_tag="RCA_01490"
/note="peptide chain release factor 2; Validated; Region:
prfB; PRK00578"
/db_xref="CDD:179072"
misc_feature complement(350018..350305)
/gene="prfB"
/locus_tag="RCA_01490"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:202648"
misc_feature complement(349589..349930)
/gene="prfB"
/locus_tag="RCA_01490"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 350880..352682
/locus_tag="RCA_01495"
/db_xref="GeneID:11860615"
CDS 350880..352682
/locus_tag="RCA_01495"
/note="COG0481 Membrane GTPase LepA"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_005299358.1"
/db_xref="GI:379022697"
/db_xref="GeneID:11860615"
/translation="MNNQKYIRNFSIIAHIDHGKSTLADRLIEHCGGFQARKMSKQVL
DSMDIEKERGITIKAQTVKLLYKAKDGNTYYLNLMDTPGHVDFAYEVSRSLAACEGSL
LVVDSTQGVEAQTLANVYKAIENNHEIVPVLNKIDLPASEPEHVKQQIKDIIGIDASE
ALLISAKSGIGIDLVLEAIVNKLPPPKESSADILKALLVDSWYDPYLGVVILVRIIDG
ALRKNMRIKMMATNSVYKVENVGYFTPKKHIADVLYAGEIGFFTASIKQVADCKVGDT
ITDEKKPCEQALPGFKPNLPVVFCGFYPTDSSEFEYLKDSLAKLHLNDSSFEYEMESS
SALGVGFRCGFLGLLHLEIIQERLSREFDLDLITTAPSVIYKIYMRDGESLEIYNPAD
LPNLQKIESMEEPWIKAIIIVPDEFLGAVLSLCTEKRGVQLDHSYIANRARIVYKLPL
NEIVYDFYDRLKSCSKGYASFEWQMDVYAPSELVKLGILVNGKAVDALSTIVHRSRAE
QTGRALCVRLKDLIPIQQIDIVIQASIGSRIIARETIKALRKDVLSKCYGGDITRKRK
LLEKQKIGKKRMRQYGNIEIPQSAFIAALKIGDE"
misc_feature 350880..352679
/locus_tag="RCA_01495"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 350901..351437
/locus_tag="RCA_01495"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 350919..350942
/locus_tag="RCA_01495"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(350922..350924,350928..350930,350940..350945,
350952..350954,350961..350966,351057..351062,
351129..351134,351201..351206,351312..351314,
351324..351326)
/locus_tag="RCA_01495"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(350928..350945,351279..351284,351288..351290,
351372..351380)
/locus_tag="RCA_01495"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 351024..351059
/locus_tag="RCA_01495"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 351045..351047
/locus_tag="RCA_01495"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 351117..351128
/locus_tag="RCA_01495"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 351123..351179
/locus_tag="RCA_01495"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 351279..351290
/locus_tag="RCA_01495"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 351372..351380
/locus_tag="RCA_01495"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 351459..351716
/locus_tag="RCA_01495"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 352089..352325
/locus_tag="RCA_01495"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 352347..352670
/locus_tag="RCA_01495"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene 352781..352855
/locus_tag="RCA_t05303"
/db_xref="GeneID:11860616"
tRNA 352781..352855
/locus_tag="RCA_t05303"
/product="tRNA-Asn"
/db_xref="GeneID:11860616"
gene 353346..353585
/locus_tag="RCA_01500"
/db_xref="GeneID:11860617"
CDS 353346..353585
/locus_tag="RCA_01500"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299359.1"
/db_xref="GI:379022698"
/db_xref="GeneID:11860617"
/translation="MDNQEEEILTSESYIDEEEEKHLKAKNARTELKLILITFTIILT
SFLTFTYFFLNYVEEKAVEYKLQQEQEAKAANKAK"
gene 353961..354044
/locus_tag="RCA_01505"
/db_xref="GeneID:11860618"
CDS 353961..354044
/locus_tag="RCA_01505"
/codon_start=1
/transl_table=11
/product="guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase"
/protein_id="YP_005299360.1"
/db_xref="GI:379022699"
/db_xref="GeneID:11860618"
/translation="MIQAALLHDTIDDTALTDEMINSIFGL"
misc_feature <353961..>354038
/locus_tag="RCA_01505"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cl00076"
/db_xref="CDD:213078"
gene complement(355385..356053)
/locus_tag="RCA_01510"
/db_xref="GeneID:11860619"
CDS complement(355385..356053)
/locus_tag="RCA_01510"
/note="COG0593 ATPase involved in DNA replication
initiation"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299361.1"
/db_xref="GI:379022700"
/db_xref="GeneID:11860619"
/translation="MQQYIFRFTTPNKYHPDEFIVSSSNNQAYNIIQNWPHRFGVNPY
KFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPA
LLYIFNIINEKRKYLLLTSFDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKH
FSISSVIISRQIIDFLLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYS
HTIL"
misc_feature complement(<355403..356053)
/locus_tag="RCA_01510"
/note="ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair]; Region: DnaA;
COG0593"
/db_xref="CDD:30938"
misc_feature complement(355409..356050)
/locus_tag="RCA_01510"
/note="hypothetical protein; Validated; Region: PRK06620"
/db_xref="CDD:168630"
gene complement(356262..357317)
/locus_tag="RCA_01515"
/db_xref="GeneID:11860620"
CDS complement(356262..357317)
/locus_tag="RCA_01515"
/note="COG0628 Predicted permease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299362.1"
/db_xref="GI:379022701"
/db_xref="GeneID:11860620"
/translation="MSKTAILWLVFLGIFISGFMLISDAVKPFFIAFIISYLLQPTIN
FIASKFKISNKFASSIIYLIFLSIFFLSLTILVPIIYGQIFTFIHNIPKYKNYFQGEI
LPPIMVKIYSIEPDIAYNIKNSLSNFINSIFTILSSIANNFWRYTIITINIFVLLLLI
PIILFYFLRDWNNIIENIKSLLPIKSRNKILEIISEINDLLSAYIRGQLNICLLLSTY
YSIAFTVIGIDLALLLGILTGFLVIIPFIGTFIAFLLTLIIGYVTFSMTAKLLYIMMI
YLVGNICESYVLTPKIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILL
LNLITFYKFSKFYRLEG"
misc_feature complement(356388..357305)
/locus_tag="RCA_01515"
/note="pheromone autoinducer 2 transporter; Reviewed;
Region: tqsA; cl00465"
/db_xref="CDD:207060"
misc_feature complement(356376..357302)
/locus_tag="RCA_01515"
/note="Domain of unknown function DUF20; Region: UPF0118;
pfam01594"
/db_xref="CDD:201878"
gene complement(357319..357858)
/locus_tag="RCA_01520"
/db_xref="GeneID:11860621"
CDS complement(357319..357858)
/locus_tag="RCA_01520"
/note="COG0576 Molecular chaperone GrpE (heat shock
protein)"
/codon_start=1
/transl_table=11
/product="heat shock protein GrpE"
/protein_id="YP_005299363.1"
/db_xref="GI:379022702"
/db_xref="GeneID:11860621"
/translation="MTDNNIENNEEEIRKAPSANDSEELTELKAQIEELKDKLIRTTA
EIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLARALAHTPAKLDVEVINIIEGVQ
MTKDELDKIFHKHHIEEIKPEIGSMFDYNLHNAISQIDNTKYAPNSVITVMQSGYKIK
DRLLRPATVQVSKKPKQEE"
misc_feature complement(357340..357816)
/locus_tag="RCA_01520"
/note="GrpE; Region: GrpE; pfam01025"
/db_xref="CDD:201556"
misc_feature complement(357346..357765)
/locus_tag="RCA_01520"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature complement(order(357514..357516,357547..357549,
357556..357558,357613..357615,357625..357627,
357646..357648,357655..357657,357667..357669,
357709..357714,357721..357723,357733..357735,
357742..357747,357754..357759))
/locus_tag="RCA_01520"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature complement(order(357361..357363,357373..357375,
357400..357402,357448..357462,357469..357471,
357706..357708))
/locus_tag="RCA_01520"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene 357935..358654
/gene="rph"
/locus_tag="RCA_01525"
/db_xref="GeneID:11860622"
CDS 357935..358654
/gene="rph"
/locus_tag="RCA_01525"
/EC_number="2.7.7.56"
/note="COG0689 RNase PH"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_005299364.1"
/db_xref="GI:379022703"
/db_xref="GeneID:11860622"
/translation="MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCE
TTVPPFLRGQNQGWVTAEYGMLPSSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVI
DLKKLGERQIIIDCDVINADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIA
AISCGIYKGETILDLDYLEDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAML
KLAKVGAAELFKLQNQVLLGS"
misc_feature 357935..358642
/gene="rph"
/locus_tag="RCA_01525"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature 357962..358642
/gene="rph"
/locus_tag="RCA_01525"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature order(357992..358006,358034..358036,358040..358042,
358046..358048,358052..358054,358058..358060,
358118..358120,358124..358126,358130..358147,
358151..358153,358160..358165,358187..358192,
358196..358201,358208..358210,358220..358222,
358229..358231,358271..358273,358277..358279,
358283..358285,358289..358297,358520..358534,
358538..358540,358544..358561,358565..358567,
358574..358579,358586..358591,358598..358600)
/gene="rph"
/locus_tag="RCA_01525"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature order(358127..358129,358190..358192,358295..358312,
358472..358474,358490..358492)
/gene="rph"
/locus_tag="RCA_01525"
/note="active site"
/db_xref="CDD:206767"
gene 359004..359357
/locus_tag="RCA_01530"
/db_xref="GeneID:11860623"
CDS 359004..359357
/locus_tag="RCA_01530"
/note="COG1215 Glycosyltransferases, probably involved in
cell wall biogenesis"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_005299365.1"
/db_xref="GI:379022704"
/db_xref="GeneID:11860623"
/translation="MRKKLCRFIQFECCYIKNQVSLIKNILLINYLKDKLDVKIIIAD
DDHLMIKEIALYNLLSYSYVIFVLKSLPGTKPKVLNDALEYLRGEYLVVYDAEDNPES
DQLLKDLAMFRNLPS"
misc_feature 359115..>359354
/locus_tag="RCA_01530"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature order(359124..359126,359286..359288,359292..359294)
/locus_tag="RCA_01530"
/note="active site"
/db_xref="CDD:132997"
gene 360285..360572
/gene="groES"
/locus_tag="RCA_01535"
/db_xref="GeneID:11860624"
CDS 360285..360572
/gene="groES"
/locus_tag="RCA_01535"
/note="COG0234 Co-chaperonin GroES (HSP10)"
/codon_start=1
/transl_table=11
/product="co-chaperonin GroES"
/protein_id="YP_005299366.1"
/db_xref="GI:379022705"
/db_xref="GeneID:11860624"
/translation="MSFKPLHDRIAIKPIEHEEKTKGGIIIPDTAKEKPMQGIITAVG
TGTRNEKGEVYPLELKVGDKVLYGKWAGTEIEIKGEKLIVMKENDVLGIIN"
misc_feature 360288..360566
/gene="groES"
/locus_tag="RCA_01535"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:73192"
misc_feature order(360288..360290,360294..360296,360300..360302,
360309..360311,360390..360395,360456..360458,
360486..360488,360501..360503,360507..360509,
360555..360563)
/gene="groES"
/locus_tag="RCA_01535"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:73192"
misc_feature 360336..360377
/gene="groES"
/locus_tag="RCA_01535"
/note="mobile loop; other site"
/db_xref="CDD:73192"
misc_feature order(360417..360419,360450..360452)
/gene="groES"
/locus_tag="RCA_01535"
/note="roof hairpin; other site"
/db_xref="CDD:73192"
gene 360602..362245
/gene="groEL"
/locus_tag="RCA_01540"
/db_xref="GeneID:11860625"
CDS 360602..362245
/gene="groEL"
/locus_tag="RCA_01540"
/note="COG0459 Chaperonin GroEL (HSP60 family)"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_005299367.1"
/db_xref="GI:379022706"
/db_xref="GeneID:11860625"
/translation="MATKLIKHGSEAREEMLKGVDILANAVKVTLGPKGRNVLIEQSF
GAPKITKDGVTVAKSIELKEKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALARE
GNKLVAAGYNPMDLKRGMDLAVNTVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGE
KIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP
FILLFEKKLSNLQPMLPILEAVVQSQRPLLIIAEDVEGEALATLVVNRLRGGLKVAAV
KAPGFGDRRKAMMEDIAILTKGELITEDLGMKLENVSIKSLGTAKRVTISKENTVIVD
GSGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKER
KDRVEDALAATRAAVEEGVVAGGGVTLLHTSQILTKLKVENKDQQAGIEIVIEALKDP
LKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIIDPAKVVRTALQDA
ASVASLIITTETLIVDEPSKEEPMPMRGSGMGGMGGMDF"
misc_feature 360602..362194
/gene="groEL"
/locus_tag="RCA_01540"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:183791"
misc_feature 360611..362173
/gene="groEL"
/locus_tag="RCA_01540"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature order(360611..360613,360623..360625,360674..360676,
360707..360718,360722..360724,360737..360742,
360746..360748,360776..360778,360782..360784,
360806..360808,360818..360820,360827..360829,
361190..361192,361286..361288,361370..361372,
361751..361753,361757..361759,361976..361978,
362141..362143,362150..362170)
/gene="groEL"
/locus_tag="RCA_01540"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:48161"
misc_feature order(360692..360700,360860..360862,360872..360874,
361049..361051,361793..361795,361844..361846,
361961..361963,362081..362083,362087..362089)
/gene="groEL"
/locus_tag="RCA_01540"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:48161"
misc_feature order(360926..360928,361901..361903,361955..361957,
361982..361984,361988..361993,362000..362002)
/gene="groEL"
/locus_tag="RCA_01540"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature order(361022..361024,361157..361159,361178..361180,
361724..361726,361826..361831)
/gene="groEL"
/locus_tag="RCA_01540"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene 362641..363030
/locus_tag="RCA_01545"
/db_xref="GeneID:11860626"
CDS 362641..363030
/locus_tag="RCA_01545"
/note="COG0317 Guanosine polyphosphate
pyrophosphohydrolases/synthetases"
/codon_start=1
/transl_table=11
/product="guanosine polyphosphate
pyrophosphohydrolase/synthetase"
/protein_id="YP_005299368.1"
/db_xref="GI:379022707"
/db_xref="GeneID:11860626"
/translation="MNHNLSKHDITAQITGRIKHPISILYKLYRKGIKLEELTDIFAI
RIVVIDEEKCYKALKVVHNLYEYEKDKFKNYILNPKPNGYQSLHTIIITEDNYKIEIQ
IRDHKMHYHAESGEAAHWKYKNSSLYT"
misc_feature <362653..>363009
/locus_tag="RCA_01545"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature 362653..362979
/locus_tag="RCA_01545"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature order(362689..362691,362695..362697,362758..362763,
362773..362775,362857..362859,362863..362865,
362878..362880,362884..362886,362890..362892,
362902..362904,362938..362940,362944..362946,
362950..362952,362974..362979)
/locus_tag="RCA_01545"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature order(362689..362691,362857..362859,362863..362865,
362878..362880,362884..362886,362890..362892,
362902..362904,362938..362940,362944..362946,
362974..362976)
/locus_tag="RCA_01545"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature order(362758..362760,362938..362940)
/locus_tag="RCA_01545"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
gene complement(363732..364265)
/locus_tag="RCA_01550"
/db_xref="GeneID:11860627"
CDS complement(363732..364265)
/locus_tag="RCA_01550"
/note="COG5342 Invasion protein B, involved in
pathogenesis"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_005299369.1"
/db_xref="GI:379022708"
/db_xref="GeneID:11860627"
/translation="MKDYVKKIAFVFSGLFIITGNFVLYSIQNVNASTTPKKYGAWTL
NCTLNEKKKLCFLSQQINNLEKDKEKEILAIYHIGYFNQEQEEQELKIIEIVPSNVQI
PAGTIINSGDKRIAAGKYVNCTVNGCQALATITQNDLDIILSNNNYVELITADGKQAK
ISFIKDGLKEGIKALSR"
misc_feature complement(363735..364262)
/locus_tag="RCA_01550"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; cl02207"
/db_xref="CDD:154799"
gene complement(364262..365653)
/gene="gltX"
/locus_tag="RCA_01555"
/db_xref="GeneID:11860628"
CDS complement(364262..365653)
/gene="gltX"
/locus_tag="RCA_01555"
/EC_number="6.1.1.17"
/note="COG0008 Glutamyl- and glutaminyl-tRNA synthetases"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_005299370.1"
/db_xref="GI:379022709"
/db_xref="GeneID:11860628"
/translation="MTNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIED
TDKERSTNEAVEAIFSGLKWLGLDWDGEVIFQSKRNDLYKEAALKLLQAGKAYYCFTS
QEEIEKQRQKALENKQYFIFNSDWRDKDPAAYPTDIKPVIRLKTPREGSITIRDTLQG
DVVIENSHIDDMVLLRSDGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQIAIYQA
CGYAVPSMTHIPLIHGADGTKLSKRHGALGVAAYKDMGYLPESVCNYLLRLGWSHGDD
EIISMDQAIKWFNLDSLGKSPAKLDFAKMNSLNAHYLRLLDNDSATSKTVERLRQNYN
VSKQEVIYINQAIRSLLVRSETLLDLVQLAQIYLVDSPIIYKQDAKEIIENCNKDLIK
QVIENLNKLKQFDKESVQNKFKEIATHNGLKLNELMKLVRALITGMTASPSVFEIAEI
LGKENILKRLKII"
misc_feature complement(364265..365647)
/gene="gltX"
/locus_tag="RCA_01555"
/note="glutamyl-tRNA synthetase; Provisional; Region:
gltX; PRK14895"
/db_xref="CDD:184889"
misc_feature complement(<365372..365647)
/gene="gltX"
/locus_tag="RCA_01555"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(365594..365605)
/gene="gltX"
/locus_tag="RCA_01555"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature complement(364712..>365134)
/gene="gltX"
/locus_tag="RCA_01555"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature complement(order(364934..364939,364961..364966,
365039..365044,365048..365053,365093..365095,
365105..365107))
/gene="gltX"
/locus_tag="RCA_01555"
/note="active site"
/db_xref="CDD:173905"
misc_feature complement(364925..364939)
/gene="gltX"
/locus_tag="RCA_01555"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene complement(365746..366456)
/locus_tag="RCA_01560"
/db_xref="GeneID:11860629"
CDS complement(365746..366456)
/locus_tag="RCA_01560"
/EC_number="2.1.1.64"
/note="COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase"
/codon_start=1
/transl_table=11
/product="bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase"
/protein_id="YP_005299371.1"
/db_xref="GI:379022710"
/db_xref="GeneID:11860629"
/translation="MSSIDKKELEKFEKISHNWWNKDGDFGILHCINPIRLKYIIEKI
TSHYNDISKLEILDVGCGGGLIATPLAAQGFNVTAIDALQSNIETATAYAKENGVKIN
YLQSTIEELKSNKLYDVVICLEVIEHVENVQQFILNLVKHIKPNGIAIISTINRVKKA
YILGIIVAEYILGWVPKNTHNYSKFLKPSEIYEMLTDTGIEIKELKGLVYDIAKNEWK
LSDNIEVNYFMYLERTTH"
misc_feature complement(365758..366456)
/locus_tag="RCA_01560"
/note="bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional; Region: PRK05134"
/db_xref="CDD:179944"
misc_feature complement(366001..366291)
/locus_tag="RCA_01560"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(366088..366090,366133..366141,
366211..366216,366262..366282))
/locus_tag="RCA_01560"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 366632..367399
/locus_tag="RCA_01565"
/db_xref="GeneID:11860630"
CDS 366632..367399
/locus_tag="RCA_01565"
/note="COG1108 ABC-type Mn2+/Zn2+ transport systems,
permease components"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_005299372.1"
/db_xref="GI:379022711"
/db_xref="GeneID:11860630"
/translation="MTLIILALILISCIFAPLGCIALWKRYIYFSDGLAHSSFLAASI
SIIAHFPLIYSGIIVAILFSFFVFIFKNNAEKNAVINLISSFMLAIALVINYFTSLQN
NIVNLLFGDILSVSFNDFIILAIVLITIIGFIIYFYNQILLIIINRDIAVIKGLKVNI
IELIFLLLLSLSVFSAIKIVGVLMVTAILLIPAMIARFMSYSPSQMIIISILISLFIN
FCAALSSFYFDLPLTPIFIIIGVLIYGLLYLKQLFVG"
misc_feature 366665..367333
/locus_tag="RCA_01565"
/note="ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism];
Region: ZnuB; COG1108"
/db_xref="CDD:31305"
misc_feature order(366857..366859,366863..366868,366875..366880,
366887..366892,366899..366901,366905..366907,
366911..366913,366944..366949,366956..366958,
367184..367186)
/locus_tag="RCA_01565"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature order(366911..366913,366986..366988,367160..367162,
367172..367174)
/locus_tag="RCA_01565"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
misc_feature order(367034..367039,367043..367051,367055..367060,
367064..367081,367085..367093,367217..367219,
367238..367240)
/locus_tag="RCA_01565"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
gene complement(367941..371369)
/locus_tag="RCA_01570"
/db_xref="GeneID:11860631"
CDS complement(367941..371369)
/locus_tag="RCA_01570"
/EC_number="6.2.1.20"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="acylglycerophosphoethanolamine acyltransferase"
/protein_id="YP_005299373.1"
/db_xref="GI:379022712"
/db_xref="GeneID:11860631"
/translation="MDTNKLYLFKDRRFLPNFIIQLCGCLNDNILKNAVVILITYSIS
GALSKYNNLLVLIANATFVLPFIICASIAGQIADKYERANLIKIIKICEIGIIAFTIY
GFHYNNLLILFCSICLMGIHSTFFGPIKYSVIPDHLNKYELLGANGFVEAGTFLSIFI
GTIIGSYYTISNNFIIYSLITIAFLGFITSLFVPKSGNANRDIKINLNIIDESINMIK
YAKAKKQIYLAILGISWFWFIGAAIISQIPLLAKITFKADENVANLFLAVFSLGVGVG
AFLCSKIFEDEITVKYLFISALGISIFGIDLFFASRISSVNYEPTQLKSILVFLSKRH
NWRIVIDLFFLAAIGGLYLVPLFAILQHYANPAHRSRIIAVNNLINSIFMMGSTIILS
LLFYLNFTIPWIILFISLANIIVTIHIYQLIPEVKIIPYTLLRRILQICFDLMYKVEV
KGFKNFQKAGKKVVVVANHISYLDPPLIATYLREEMTFAISPDIQKIWWIKPFLRMAK
TLPVDPSNPMAIKTLIKEVQKEQKVAIFPEGRISVTGSLMKIYEGPGMIADKAGATIL
PVRIDGTQFTHLSKLKHILKRKIFPKITITVLPPVKFANMNAVSNQERRSYIARTLYD
IMADMMFESSDYKNTLFSSLIEAAKIHGFKKKIVDDFENNVVTYRELILKSFILGNLI
KTNNIFGRNLGLMLPNTTNTLIAFYAMQSSDYVPAIINWSSSISTIINSCKLAQIKVV
YTSKQFIEKANLHELITNLLDFGIKIIYLEDFTNQISIALKLKAKIGSYFAHTYYNYL
CRNRDDEKPSVIIFTSGTEGEPKAVLLSHRNLQTNRYQITAKVPFSPEDIVFNSLPLF
HCFGLGGAIITTLNGIKLFLYPSPLNYSTIPEVIYDVGATILISTDTFLNGYANYAHP
YDFYSLRYIFAGSEKLKESTRKFWLNKYGIRIFEGYGITEASPIIACNTPMHNKAGTV
GRLLPKIDYKLEKVEGINEGERLFIRGPNIMLGYLESENNHTYREWYDTNDIVKIDSE
GYITILGRVKHFAKIAGYMISLTKIEELASEIDPDSLHAAISVPDKTHGEKIILFTTG
SVINSKNFTDVVSKAQISLLHLPKVIITDSEIPLLANGKIDYLEIMKNVDRYIQ"
misc_feature complement(367944..371366)
/locus_tag="RCA_01570"
/note="acylglycerophosphoethanolamine acyltransferase;
Provisional; Region: PRK06814"
/db_xref="CDD:180708"
misc_feature complement(370119..371273)
/locus_tag="RCA_01570"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(370218..370220,370227..370232,
370239..370244,370251..370256,370287..370289,
370296..370301,370311..370313,370320..370325,
370332..370334,370539..370541,370551..370553,
370560..370562,370572..370574,370584..370586,
370626..370628,370635..370640,370647..370652,
370659..370661,370896..370898,370914..370919,
370926..370931,370965..370967,370974..370979,
370986..370991,370998..371003,371148..371153,
371157..371162,371172..371174,371181..371186,
371193..371195,371226..371231,371235..371243,
371250..371252))
/locus_tag="RCA_01570"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(369558..370052)
/locus_tag="RCA_01570"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(369747..369755,369891..369902,
369948..369950,369954..369956,369963..369965))
/locus_tag="RCA_01570"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
misc_feature complement(368157..369371)
/locus_tag="RCA_01570"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene complement(371396..371554)
/locus_tag="RCA_01575"
/db_xref="GeneID:11860632"
CDS complement(371396..371554)
/locus_tag="RCA_01575"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299374.1"
/db_xref="GI:379022713"
/db_xref="GeneID:11860632"
/translation="MSSIEDTKEKPKSAKSTAKFNNLSIALKKNLQRRKKVQKEKNNI
GNKPDLTY"
gene 371634..373178
/locus_tag="RCA_01580"
/db_xref="GeneID:11860633"
CDS 371634..373178
/locus_tag="RCA_01580"
/note="COG4799 Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta)"
/codon_start=1
/transl_table=11
/product="propionyl-CoA carboxylase subunit beta"
/protein_id="YP_005299375.1"
/db_xref="GI:379022714"
/db_xref="GeneID:11860633"
/translation="MNQSNIISPELLDERKNIARQGGGEARINAQHHKGKLTARERIE
VLLDPNSFTETGMFVAHRCANFGMQDKKFLGDGVVTGHGTINGRLVFIYSQDFTVLGG
SLGEYHAKKICDIIDQAIATAAPVIGINDSGGARIQEGVDALAGYGELFQRNVLASGV
IPQITLIMGPCAGGAVYSPALTDFIFMVKNSSYMFVTGPDVVKTVTGEEVSQEKLGGA
RMHTTKSGVADLAFNNDIEALLEIRKFFNFLPSSNRSPLPVRSTVDPADRVDMSLSTL
IPNTPNKPYDMKELVERIVDEGEFFELQPDFAKNIIIGFGYMEGYPVGFVANQPLHLA
GCLDINASRKAARFIRFCDAFNIPIVSLVDVPGFLPGTSQEHDGIIKHGAKLLYAYAE
ATVPKITVITRKAYGGAYIVMNSKHLRGDINYAWFNSEIAVMGAEGAAEIIFKEECKA
PEAKKQKIDEYRKVVTSPFVAASRGYLDDIIRPQNTRWRICKALNFLRTKKVELPWKK
HDNLPL"
misc_feature 371661..373175
/locus_tag="RCA_01580"
/note="methylmalonyl-CoA decarboxylase alpha subunit;
Region: mmdA; TIGR01117"
/db_xref="CDD:130187"
misc_feature 371742..372350
/locus_tag="RCA_01580"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
misc_feature 372414..>373007
/locus_tag="RCA_01580"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene 373388..373645
/locus_tag="RCA_01585"
/db_xref="GeneID:11860634"
CDS 373388..373645
/locus_tag="RCA_01585"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299376.1"
/db_xref="GI:379022715"
/db_xref="GeneID:11860634"
/translation="MNAYTVTRIIRDIKEIKNTSTVSMTLVTPITPHAPTLDNKFYHL
ESQNYYLCHTKHTLISPIKHLAEEAPTLVPVQVQDIYAQCR"
gene 373781..375778
/locus_tag="RCA_01590"
/db_xref="GeneID:11860635"
CDS 373781..375778
/locus_tag="RCA_01590"
/note="COG4770 Acetyl/propionyl-CoA carboxylase, alpha
subunit"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase, biotin carboxylase"
/protein_id="YP_005299377.1"
/db_xref="GI:379022716"
/db_xref="GeneID:11860635"
/translation="MNKPLFDKILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSI
YVQHADEAYYIGDSPATESYLSIKNIISAIRESGASAVHPGYGFLSENPNFANILKRE
GVVLIGPSATTIKKMGDKIEAKKIAIEAGVSTVPGYMGTIKDVKQAVDIAKEIGFPII
VKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLL
ADQYGNSVCLGERECSIQRHHQKVIEEAPSSFITEDVRQEMYKQVISLSQKVGYYSAG
TVEFIVDSNKNFYFLEMNTRLQVEHPVTELITGIDIVEEMIKIAAGAKLSFTQDDVKL
KGWAFESRICAENPSRGFLPSSGRIIAYSEPAKSPNIRIDTGIGLGGEVSMFYDSMIA
KLCTYGETREQAIEVMRSALSSYIINGIAHNISFLEAVMLHPRFVSGDISTAFIQEEY
PDGFSGASLTSEVTTVFLATAIFIYISEQRRASLISGNINNQANKIGTRWVVTIDDKL
FPVLITPVENGYNIRHESDRIYIRSNWNLGNELFTAIINGKKTNVKIENIRTGYLLSH
AGISVKAFVRSPRISELEALMVSKVVVEENTELQAPLSGQIVSIKVMEGQQVIVGQEI
MVLTAMKMENLILAERDGKIAKIYVNEKDNVVRGQILLEFA"
misc_feature 373793..375775
/locus_tag="RCA_01590"
/note="Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism]; Region: COG4770"
/db_xref="CDD:34383"
misc_feature 373796..374119
/locus_tag="RCA_01590"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 374135..374671
/locus_tag="RCA_01590"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
misc_feature 374798..375118
/locus_tag="RCA_01590"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
misc_feature 375572..375772
/locus_tag="RCA_01590"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(375641..375643,375668..375676,375695..375697)
/locus_tag="RCA_01590"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 375671..375673
/locus_tag="RCA_01590"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene complement(376977..377096)
/locus_tag="RCA_01595"
/db_xref="GeneID:11860636"
CDS complement(376977..377096)
/locus_tag="RCA_01595"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299378.1"
/db_xref="GI:379022717"
/db_xref="GeneID:11860636"
/translation="MNLINIILHRKVDKYKALEFAIQKKNYQQTDDLIELTLM"
gene complement(377352..380591)
/gene="ileS"
/locus_tag="RCA_01600"
/db_xref="GeneID:11860637"
CDS complement(377352..380591)
/gene="ileS"
/locus_tag="RCA_01600"
/EC_number="6.1.1.5"
/note="COG0060 Isoleucyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_005299379.1"
/db_xref="GI:379022718"
/db_xref="GeneID:11860637"
/translation="MTNTKYYPEVSSNADFAAIEREILKLWQDNNIFQKSIDNRIKDA
EFIFYDGPPFANGLPHYGHLLTGFIKDVYARYQTIKGKKVERRFGWDCHGLPAEMQSE
KELGISGRLAITNFSIEKFNSHCRASVMKYTGEWEQYVTRQARWVDFKNSYKTMDTHF
MESVLWAFKELYNKGLLYESMRVMPYSWACETPLSHFETRLDNSYRERADKAVTVSFM
LRDKLPHSEYKEYRIFAWTTTPWTLPANLALAVGSDIDYALAPKNDICYIIAASSVSK
YAKELELKGDEQFTIIKGSELEGLRYKPLFNYFENHPNSFKIFACDFVVEGDGTGVVH
MAPGFGEDDQILCESKGIELVCPVDNSGKFTKEIPDLEGLQVFDANDKIIIKLKEQGN
WLKTEQYIHNYPHCWRTDTPLIYKAVPSWYVKVTNFKDRIVELNQQINWIPSHVKDNV
FGKWLENARDWSISRNRFWGTPLPVWKSDDPKYPRIDVYGSIEELEKDFGVKVTDLHR
PFIDELTRANPDDPTGKSTMRRIEDVFDCWFESGSMPYSQAHYPFENKKWFEDHFPAD
FIVEYVAQTRGWFYTLMVLSTALFDRPPFLNCICHGVILDTTGQKLSKRLNNYADPLE
LFDKYGSDALRITMLSSNVVKGQELLIDKDGKMVFDTLRLFIKPIWNAYHFFTMYANA
DSLKGKSDFDSENVLDIYILSKLKIAVQKIEKSLDNFDTQAAYHQVSEFFEVLNNWYI
RRSRARFWKSEKDADKQNAYNTLYSCLETMAIAMSALVPMISEAIYLGLHNTVIPQLD
YGISGDKPGAQDPIIKSQDGIRGCRNDNLSVHLCNYPKLSNFEVNHELVATMDTVLDI
CSNSLFIRSNENVRVRQPLASITIISKHNDKLKDFEDLIKDEINVKAIIYRDDLENYA
TTKLSLNFPMLGKRLPYKMKEIIAASKKGEWEATASALAICGETLKSEEYKLVLEPYS
HIKGAASFADNSSLLILDLELTPELIKEGIARDIVRFIQQARKDADCSITDRILIEII
SESDLSKIINIYGDYIKEQTLSEFAKDFTPDYVNEIELENHKIQLKIKR"
misc_feature complement(377355..380582)
/gene="ileS"
/locus_tag="RCA_01600"
/note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
PRK06039"
/db_xref="CDD:180364"
misc_feature complement(<380034..380459)
/gene="ileS"
/locus_tag="RCA_01600"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature complement(380403..380414)
/gene="ileS"
/locus_tag="RCA_01600"
/note="HIGH motif; other site"
/db_xref="CDD:173909"
misc_feature complement(378660..>379358)
/gene="ileS"
/locus_tag="RCA_01600"
/note="catalytic core domain of isoleucyl-tRNA
synthetases; Region: IleRS_core; cd00818"
/db_xref="CDD:173909"
misc_feature complement(order(378750..378767,378777..378791,
378858..378860,378864..378866,378870..378884,
378969..378971,378978..378980,379245..379247))
/gene="ileS"
/locus_tag="RCA_01600"
/note="active site"
/db_xref="CDD:173909"
misc_feature complement(378747..378761)
/gene="ileS"
/locus_tag="RCA_01600"
/note="KMSKS motif; other site"
/db_xref="CDD:173909"
misc_feature complement(378009..378632)
/gene="ileS"
/locus_tag="RCA_01600"
/note="Anticodon-binding domain of archaeal, bacterial,
and eukaryotic cytoplasmic isoleucyl tRNA synthetases;
Region: Anticodon_Ia_Ile_ABEc; cd07961"
/db_xref="CDD:153415"
misc_feature complement(order(378009..378011,378018..378020,
378360..378362,378369..378371,378381..378383,
378393..378395,378402..378407,378414..378419,
378426..378428,378567..378572,378579..378581,
378588..378590,378603..378605,378612..378614,
378624..378626))
/gene="ileS"
/locus_tag="RCA_01600"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153415"
misc_feature complement(order(378570..378572,378579..378581))
/gene="ileS"
/locus_tag="RCA_01600"
/note="anticodon binding site; other site"
/db_xref="CDD:153415"
gene complement(381062..381673)
/locus_tag="RCA_01605"
/db_xref="GeneID:11860638"
CDS complement(381062..381673)
/locus_tag="RCA_01605"
/note="COG5590 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="isoleucyl-tRNA synthetase"
/protein_id="YP_005299380.1"
/db_xref="GI:379022719"
/db_xref="GeneID:11860638"
/translation="MSIQEEYYIKKLSFVQSSLELLPFNEWNNKLLKEAEEKCGFATG
YSLILFPEGLSEIVEFCESYLDKILLESLSIIEEPAKIREKISLAIKIRIKSTLPIIH
SKNAAYFALNPIQGAKVAFRSCDAIWRYAGDKSLDFNYYTKRSVLLSVYVSSILVYIQ
DESEHYIDTDKFIENSVENIVKTFSQMRKLLDPSNIPIVRMFT"
misc_feature complement(381065..381673)
/locus_tag="RCA_01605"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5590"
/db_xref="CDD:35149"
misc_feature complement(381104..381643)
/locus_tag="RCA_01605"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 381759..381959
/gene="rpsU"
/locus_tag="RCA_01610"
/db_xref="GeneID:11860639"
CDS 381759..381959
/gene="rpsU"
/locus_tag="RCA_01610"
/note="COG0828 Ribosomal protein S21"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_005299381.1"
/db_xref="GI:379022720"
/db_xref="GeneID:11860639"
/translation="MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKR
VRKAQEAARRQRKFARKKMFDE"
misc_feature 381759..>381881
/gene="rpsU"
/locus_tag="RCA_01610"
/note="30S ribosomal protein S21; Reviewed; Region: rpsU;
PRK00270"
/db_xref="CDD:178952"
gene 382836..384638
/locus_tag="RCA_01615"
/db_xref="GeneID:11860640"
CDS 382836..384638
/locus_tag="RCA_01615"
/note="COG5000 Signal transduction histidine kinase
involved in nitrogen fixation and metabolism regulation"
/codon_start=1
/transl_table=11
/product="nitrogen regulation protein ntrY"
/protein_id="YP_005299382.1"
/db_xref="GI:379022721"
/db_xref="GeneID:11860640"
/translation="MLSYFKQNLRSYFSSRMLIFILMASSVIVACATFYVISLESKSF
STIIGFLLVDLAVFLILGILLTQKFFAKNNNNDTSKLQNRIVIAFSLVAAIPTIIVSV
FSVYFFNLSVQAWFDKKISTVLDQSVIVAESYIAEHKLQLKETALAVAEDLGDMYYDL
IHNPALFTKTLNTEAEMRSLDEAIVLNKSTNTIVANSYLSFSLSFATIPAYLIKKADL
GEPVEVKSDPTKIRMLIKLKEYNDVYLLVGRLVDNKIIDHIDATNGAAAEYNSLKNEI
DNIQIKFSIMFIFIALLLLFVAISFGVIFTAKIVNPIKKLVTATDKVKDGDLTVQVPE
NEVDKDEIGTLYAAFNRMIKQISRQQRDLVIAQRAMVWSDVAKKVAHEIKNPLTPILL
ASERLFKKFSPEIKERTEFENYLKMIIRHTNDIKSIVSEFVLFARLPAPKFTKSEIVY
LVKHIVEARKLLNDHILYKFESNVDQFDFMCDATQINQVMINLLKNAEESIEGREDGK
IEVTIDAKDDFISVIVIDNGKGFPPELIGKATESYVTTSSKGMGVGLAIVKRIVEEHC
GVLDIANREEKGAIIDIKFDLKELDLKVLKIGLK"
misc_feature 382860..>383945
/locus_tag="RCA_01615"
/note="Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms]; Region: NtrY; COG5000"
/db_xref="CDD:34605"
misc_feature <382935..383159
/locus_tag="RCA_01615"
/note="Serpentine type 7TM GPCR chemoreceptor Srh; Region:
7TM_GPCR_Srh; cl11665"
/db_xref="CDD:209378"
misc_feature 383760..383909
/locus_tag="RCA_01615"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(383760..383765,383772..383777,383781..383786,
383793..383798,383802..383804,383856..383861,
383865..383870,383877..383882,383886..383891,
383898..383903)
/locus_tag="RCA_01615"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 383970..384146
/locus_tag="RCA_01615"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(383970..383972,383982..383984,383991..383993,
384003..384005,384012..384014,384075..384077,
384087..384089,384096..384098,384108..384110,
384117..384119,384129..384131)
/locus_tag="RCA_01615"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 383976..383978
/locus_tag="RCA_01615"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 384291..384590
/locus_tag="RCA_01615"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(384309..384311,384321..384323,384330..384332,
384405..384407,384411..384413,384417..384419,
384423..384428,384489..384500,384546..384548,
384552..384554,384567..384572,384576..384578)
/locus_tag="RCA_01615"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 384321..384323
/locus_tag="RCA_01615"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(384417..384419,384423..384425,384489..384491,
384495..384497)
/locus_tag="RCA_01615"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 384832..386339
/locus_tag="RCA_r05355"
/db_xref="GeneID:11860641"
rRNA 384832..386339
/locus_tag="RCA_r05355"
/product="16S ribosomal RNA"
/db_xref="GeneID:11860641"
gene 387027..387341
/locus_tag="RCA_01620"
/db_xref="GeneID:11860642"
CDS 387027..387341
/locus_tag="RCA_01620"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299383.1"
/db_xref="GI:379022722"
/db_xref="GeneID:11860642"
/translation="MGVKTLNVVDKKRGNDALYLVILDSSENDTELITCLIKNGININ
HQNSLGNTALLTSGYLSVVRILLENGADINIKNNENITSAILLQNEMFRYTIFLLIDL
LL"
misc_feature <387060..387272
/locus_tag="RCA_01620"
/note="ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can range
from 2 to over 20 (ankyrins, for example). ANK repeats may
occur in combinations with other...; Region: ANK; cd00204"
/db_xref="CDD:29261"
misc_feature <387099..387257
/locus_tag="RCA_01620"
/note="Ankyrin repeats (3 copies); Region: Ank_2;
pfam12796"
/db_xref="CDD:205076"
gene 387338..387448
/locus_tag="RCA_01625"
/db_xref="GeneID:11860643"
CDS 387338..387448
/locus_tag="RCA_01625"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299384.1"
/db_xref="GI:379022723"
/db_xref="GeneID:11860643"
/translation="MINTNSLAVKKIYEKINNKITKELAEALIKKYEVFK"
gene 388432..390255
/locus_tag="RCA_01630"
/db_xref="GeneID:11860644"
CDS 388432..390255
/locus_tag="RCA_01630"
/note="COG0666 FOG: Ankyrin repeat"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S21"
/protein_id="YP_005299385.1"
/db_xref="GI:379022724"
/db_xref="GeneID:11860644"
/translation="MQKILLKGRNVNIKNPNPNIKEIKTLAELPSGTGHEYFINLHGS
EIKSFFKKDYSFLYITGLSAEDGTKISILDITLLNNIQNGIHADQCNIVHIYSCYSGA
AQHHLNCIHGNIVLCTYNKASDVNVILLAQSNYDARIKNDSSLIEYIRDNFHLLAASD
FSISYKLDDQIYNFSLSADEIKKMKSIEELPAFLHKAYDAFVKFYTKIYAEYHESYPE
IFNLKIEPEPKALTHADLIRVFNRVVVLEVYNFNKSSLSNIKTMLNQEGLNINICIDR
AIKQGNCELLICLLNYYNTNIKSNILDKAIERGDLNIVKIVLEHSTTKINSYTLSQAI
ERGDINILKAVLEHSTTQINSYTLSQVIERGDINILKAVLEHSTTEINSYTLSQVIER
GDINILKAVLEHSTTQMDFYNLAKVIKKGDLNILKVVLEHTTKEVEFCNLFLIYQAIE
KGDVNILKAVLEHSTTQVGSYTLNQVIERGDVNILKAILEHSTTKIESYNLAKVVEKG
DLNILKAVLEYNTKEVEFCNLFLIYQAIEKGNVNILKAILEHSTKENFNLEILFNDPT
VNSYNNTAEETNDVENTSTINTMLNVVEEVAPLGESSESSV"
misc_feature 389260..389475
/locus_tag="RCA_01630"
/note="Ankyrin repeats (3 copies); Region: Ank_2;
pfam12796"
/db_xref="CDD:205076"
gene complement(390317..390673)
/gene="rnpA"
/locus_tag="RCA_01635"
/db_xref="GeneID:11860645"
CDS complement(390317..390673)
/gene="rnpA"
/locus_tag="RCA_01635"
/EC_number="3.1.26.5"
/note="COG0594 RNase P protein component"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="YP_005299386.1"
/db_xref="GI:379022725"
/db_xref="GeneID:11860645"
/translation="MSITSLKNQKEFELINKLGKKFHERYFILVIAKNLPKIFLETKY
NIFLGIKVSKKLNKKAVVRNKIKRRIRHLIRMNVSDSKLKAIKLAIIIIPRKGFEEIN
FSHLNDELSNIILKNI"
misc_feature complement(390320..390673)
/gene="rnpA"
/locus_tag="RCA_01635"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01492"
/db_xref="CDD:100883"
gene complement(390693..390827)
/gene="rpmH"
/locus_tag="RCA_01640"
/db_xref="GeneID:11860646"
CDS complement(390693..390827)
/gene="rpmH"
/locus_tag="RCA_01640"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L34"
/protein_id="YP_005299387.1"
/db_xref="GI:379022726"
/db_xref="GeneID:11860646"
/translation="MKRTFQPSNLVRKRRHGFRARMATPSGRAILRRRRAKGRHKLSA
"
misc_feature complement(<390753..390827)
/gene="rpmH"
/locus_tag="RCA_01640"
/note="50S ribosomal protein L34; Reviewed; Region: rpmH;
PRK00399"
/db_xref="CDD:179004"
gene complement(390960..391313)
/gene="rplT"
/locus_tag="RCA_01645"
/db_xref="GeneID:11860647"
CDS complement(390960..391313)
/gene="rplT"
/locus_tag="RCA_01645"
/note="COG0292 Ribosomal protein L20"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_005299388.1"
/db_xref="GI:379022727"
/db_xref="GeneID:11860647"
/translation="MTRAKSGKISKNRHKKILKLAKGYRGRANSCFRVAIAKVEKALQ
YAYRDRRNRKRNFRGLWIQRINAAVRAHGLIYSQFMGALKKAGIDIDRKVLAELAVNN
SDGFASIVEKAKAHI"
misc_feature complement(390972..391313)
/gene="rplT"
/locus_tag="RCA_01645"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature complement(390981..391298)
/gene="rplT"
/locus_tag="RCA_01645"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature complement(order(391032..391040,391062..391064,
391071..391076,391083..391088,391104..391106,
391116..391118,391125..391133,391137..391181,
391188..391193,391203..391208,391215..391226,
391230..391253,391266..391277,391281..391298))
/gene="rplT"
/locus_tag="RCA_01645"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature complement(order(390987..390992,391008..391013,
391029..391031,391038..391049,391164..391166,
391173..391178,391182..391187,391194..391196,
391206..391208))
/gene="rplT"
/locus_tag="RCA_01645"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature complement(order(391014..391016,391023..391025,
391032..391034,391104..391106,391110..391115,
391122..391124,391131..391136,391143..391145))
/gene="rplT"
/locus_tag="RCA_01645"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene complement(391329..391535)
/gene="rpmI"
/locus_tag="RCA_01650"
/db_xref="GeneID:11860648"
CDS complement(391329..391535)
/gene="rpmI"
/locus_tag="RCA_01650"
/note="COG0291 Ribosomal protein L35"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_005299389.1"
/db_xref="GI:379022728"
/db_xref="GeneID:11860648"
/translation="MPKLKTKSAVKKRFKLTASGNVIASQAGKKHFMRRRTKAQIRNL
RGTTILCNQEGYNIKKYFLPYGTN"
misc_feature complement(391338..391535)
/gene="rpmI"
/locus_tag="RCA_01650"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:178913"
gene 391827..392504
/locus_tag="RCA_01655"
/db_xref="GeneID:11860649"
CDS 391827..392504
/locus_tag="RCA_01655"
/note="COG0602 Organic radical activating enzymes"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_005299390.1"
/db_xref="GI:379022729"
/db_xref="GeneID:11860649"
/translation="MFGQNPKRSILNGDGTKLEVKSIFKTIQGEGIFVGSPAIFVRLG
GCNLACHFCDTEFEDFDLVDITEILNKVESLALNSKNEKSVNLIVITGGEPMRQPIAL
LCQKLLDRDFKVQIETNGTLYRSLPNEVSIICSPKAGQTGYSKIREDLLSQISAVKFI
VAKNILEYSFIPEVGQTAYNIPVFVQPMDQNNPKLNDENNALAVKLALESGSKLSLQT
HKFLGID"
misc_feature 391869..392501
/locus_tag="RCA_01655"
/note="Organic radical activating enzymes
[Posttranslational modification, protein turnover,
chaperones]; Region: NrdG; COG0602"
/db_xref="CDD:30947"
misc_feature 391956..>392198
/locus_tag="RCA_01655"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(391962..391964,391968..391970,391974..391976,
391980..391988,392097..392099,392103..392108,
392175..392183)
/locus_tag="RCA_01655"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 392587..393201
/locus_tag="RCA_01660"
/db_xref="GeneID:11860650"
CDS 392587..393201
/locus_tag="RCA_01660"
/note="COG1825 Ribosomal protein L25 (general stress
protein Ctc)"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25/general stress protein
Ctc"
/protein_id="YP_005299391.1"
/db_xref="GI:379022730"
/db_xref="GeneID:11860650"
/translation="MSKILELEAQSRTEFGTGAARALRREGRVPAIIYGAGKTPVSIS
LEEKEITKYYRKPAFISQLINLTIDKKQYKVLPKAVELHPVTDIVRHVDFVFLEEKKQ
KMEVPVVYEGKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLNS
SKIVLPKGCSFASKKEFVLATIIGRRGVKTEAEGEQQAATEAGK"
misc_feature 392590..393153
/locus_tag="RCA_01660"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:180166"
misc_feature 392602..392868
/locus_tag="RCA_01660"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature order(392620..392622,392644..392652,392656..392658,
392686..392694,392704..392706,392818..392823,
392827..392829,392857..392859,392863..392865)
/locus_tag="RCA_01660"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature order(392692..392694,392770..392772,392806..392808,
392818..392820)
/locus_tag="RCA_01660"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature order(392812..392817,392824..392826,392845..392847)
/locus_tag="RCA_01660"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene 393417..393974
/locus_tag="RCA_01665"
/db_xref="GeneID:11860651"
CDS 393417..393974
/locus_tag="RCA_01665"
/EC_number="3.1.1.29"
/note="COG0193 Peptidyl-tRNA hydrolase"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_005299392.1"
/db_xref="GI:379022731"
/db_xref="GeneID:11860651"
/translation="MIFVIGLGNPGKEYQYTRHNIGFIVIEKIANQYNLSFSTKKKFN
CEIVESSVEKQKLIFIKPTTYMNLSGKSVISVKTYYNICSEKIFVIHDDIDLETGRIK
FKTGGGNGGHNGLKSIDRVIGNNYNRIRIGVGRPQNNQDVADYVLNNFPRSEYEIVIQ
SIDKITNNFDLILENKLEEFKNKIG"
misc_feature 393426..393935
/locus_tag="RCA_01665"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature order(393441..393443,393471..393473,393609..393614,
393690..393692,393750..393752)
/locus_tag="RCA_01665"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature 393471..393473
/locus_tag="RCA_01665"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene 394600..395697
/locus_tag="RCA_01670"
/db_xref="GeneID:11860652"
CDS 394600..395697
/locus_tag="RCA_01670"
/note="COG0012 Predicted GTPase, probable translation
factor"
/codon_start=1
/transl_table=11
/product="GTP-binding protein YchF"
/protein_id="YP_005299393.1"
/db_xref="GI:379022732"
/db_xref="GeneID:11860652"
/translation="MTLKLGIVGLPNVGKSTLFNALTASQAADAANYPFCTIEPNSSK
VSVPDKRLHKLASLAGSRKIISSYIDFVDIAGLVKGASKGEGLGNKFLSHIREVDAIL
HVLRCFEDEDIMHVHNKVDPLHDLEIIETELILADIELVEKRLATSEKRLKSGDKTMA
AQIELLKEVYKWLADGKPARVLNEILGVDKLKQLQLITFKPVLYVCNVLEQDAVGGNE
LTKLVVERAKKENAKSVVVSSKIEADIALLESIEEKEEFLKDIGLDETGLSKVIKEGY
NLLNLKSFFTIGPKEVHSWTFKDGTLASAAAGIIHTDFEKGFIRAEVIGYEDYISLGS
EAKAKAVGKMRLEGKEYKMQDGDIVHFRFNV"
misc_feature 394600..395694
/locus_tag="RCA_01670"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:181981"
misc_feature 394615..395436
/locus_tag="RCA_01670"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature 394624..394647
/locus_tag="RCA_01670"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature order(394633..394635,394639..394650,395218..395223,
395227..395229,395311..395319)
/locus_tag="RCA_01670"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature 394696..394719
/locus_tag="RCA_01670"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature 394708..394710
/locus_tag="RCA_01670"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature order(394813..394842,394861..394890)
/locus_tag="RCA_01670"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature 394816..394827
/locus_tag="RCA_01670"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature 395218..395229
/locus_tag="RCA_01670"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature 395311..395319
/locus_tag="RCA_01670"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature 395440..395688
/locus_tag="RCA_01670"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene 395711..395950
/locus_tag="RCA_01675"
/db_xref="GeneID:11860653"
CDS 395711..395950
/locus_tag="RCA_01675"
/note="COG1708 Predicted nucleotidyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299394.1"
/db_xref="GI:379022733"
/db_xref="GeneID:11860653"
/translation="MKTILPKWLLEVQDRLDYIVQQILTGAKDKIDMIILYGSYARGD
WVKDMYKEGSYYLCYISAFDLFNSIKKVNLRSMLF"
misc_feature 395768..>395854
/locus_tag="RCA_01675"
/note="RelA- and SpoT-like ppGpp Synthetases and
Hydrolases, catalytic domain; Region: Rel-Spo_like;
cl11966"
/db_xref="CDD:209402"
misc_feature <395861..>395944
/locus_tag="RCA_01675"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 396626..397855
/locus_tag="RCA_01680"
/db_xref="GeneID:11860654"
CDS 396626..397855
/locus_tag="RCA_01680"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299395.1"
/db_xref="GI:379022734"
/db_xref="GeneID:11860654"
/translation="MKIIKQIPAWILLCLFILSPTTETIYTSGLPSVTKYFGIDGGIT
QITSTLYFLGFAFGILSLGRLSDIYGRRPIVLLGLVIYVISSIISIFAVNIEMLMIAR
FTQAFGVSVGSVIGQAMARDSYQGSELSYVYASLSPWLLFIPAVGSSIGGYIIEYLNW
HYVFVFFSLTGTILLALYYKVLPETNSYINFSQSSKYCEVLQVIIKDKILWLYAFIIG
AFNGIYYGFYIEAPFIFIDKMKVAPSFYGKLAFLLSFAGIVGGFLGGYLIKKCHIHDK
KVMGLGCIFSLCGCILFAINAFMLEAVQTSKNLTIIIIFVPMMTHMLGHNLLIPMTLR
YALEDYAKVTGTAGSIFGAIYYVLIAVITYIVAQIHAETISNFALLCVALSISSAAAF
YYIWCLYKKKQYRKVIY"
misc_feature 396632..397810
/locus_tag="RCA_01680"
/note="drug resistance transporter, Bcr/CflA subfamily;
Region: efflux_Bcr_CflA; TIGR00710"
/db_xref="CDD:162006"
misc_feature 396653..397813
/locus_tag="RCA_01680"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(396692..396694,396701..396709,396713..396718,
396767..396769,396776..396781,396788..396790,
396800..396805,396809..396814,396950..396955,
396962..396967,396974..396979,396986..396988,
397022..397027,397034..397039,397055..397057,
397286..397288,397295..397300,397307..397312,
397319..397321,397361..397363,397373..397375,
397385..397387,397394..397396,397406..397408,
397589..397591,397598..397603,397610..397612,
397622..397627,397634..397636,397664..397669,
397676..397681,397688..397693,397700..397702)
/locus_tag="RCA_01680"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(397852..398061)
/locus_tag="RCA_01685"
/db_xref="GeneID:11860655"
CDS complement(397852..398061)
/locus_tag="RCA_01685"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299396.1"
/db_xref="GI:379022735"
/db_xref="GeneID:11860655"
/translation="MKVEVTKNNNRYVNFSKEEEKSSYKVGTQATRIQESLTKNSQVN
TTPPVAPPNPMPRGNKKGVSAIRYN"
gene complement(398190..398333)
/locus_tag="RCA_01690"
/db_xref="GeneID:11860656"
CDS complement(398190..398333)
/locus_tag="RCA_01690"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299397.1"
/db_xref="GI:379022736"
/db_xref="GeneID:11860656"
/translation="MNSYRTTDFPIKPDKALGSMDLSIVALDENGNKPTASKAIFYCS
LCT"
misc_feature complement(<398208..>398333)
/locus_tag="RCA_01690"
/note="120 KDa Rickettsia surface antigen; Region:
120_Rick_ant; pfam12574"
/db_xref="CDD:193084"
gene complement(399187..399348)
/locus_tag="RCA_01695"
/db_xref="GeneID:11860657"
CDS complement(399187..399348)
/locus_tag="RCA_01695"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299398.1"
/db_xref="GI:379022737"
/db_xref="GeneID:11860657"
/translation="MTRYLDNYLKNFNFPQDVEKITKLVEAFSNNYYKYKNPKENKQI
LEEIYNIRK"
gene complement(399391..399564)
/locus_tag="RCA_01700"
/db_xref="GeneID:11860658"
CDS complement(399391..399564)
/locus_tag="RCA_01700"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299399.1"
/db_xref="GI:379022738"
/db_xref="GeneID:11860658"
/translation="MDTPNYIYKGTKGVAHFFQNLCETTKTDLDFVRKYLADNADVLK
LLLTQVHLKYLLE"
gene complement(399733..401910)
/locus_tag="RCA_01705"
/db_xref="GeneID:11860659"
CDS complement(399733..401910)
/locus_tag="RCA_01705"
/note="COG3621 Patatin"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299400.1"
/db_xref="GI:379022739"
/db_xref="GeneID:11860659"
/translation="MTGKIANIKTNRVLALSGGGVKGISELIVLIAIEERTGKSISEL
FPIISGTSVGGLIAALLTIPKELGAKEAKYSAREALEIFKTNANYIFPDNFLGSVKQI
FTHKYSQKPLKELLEKYLGDNRMDSTTSRLVIPVNDLTANGGKLEVFDSFHGYSPHVR
VKDVLLATTAAPTYFKPIMDKAAIQEYNYASGTPYAYADGGLNANRPASEVLKLLKKG
YIHKEQNHTRVDKNLTREEQKEILDHTMVCAFNFSNNIEPTNSIPKIGSDGIIGWLVK
GKLISRLMHNMENSSTTEVKNDLSGKDEFFEVGLPITKETKSLDNASPQNIERLEEIG
YKYVQENNELIQKLCDNLLDNLNKEQEANQTVDLIDGCFAEEENIENNQETINKPITQ
ALEPDDEDFEEEENIENNQETINKPITQALEPDDEDFEEEENIENNQETINKPITQAL
EPDDEDFEEEENIENNQETINKPITQALEPDDEDFEEEENIENNQETINKPITQALEP
DDEDFEEEENIENNQETINKPITQALEPDDEDFEEEENIENNQETINKPITQALEPDD
EDFEEEENIENNQETINKPITQALEPDDEDFEEEENIENNQETINKPITQALEPDDED
FEEDTEYEKEELLTGIKKFLNAFSEQNPTLKNDIDNFLQTAENYTLNEIKECIVSFEQ
ASLKWQAEQKKHDVFSSCSMEALKEEIDLEGIDDEVLNHEIIA"
misc_feature complement(400867..401877)
/locus_tag="RCA_01705"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
misc_feature complement(order(401314..401316,401755..401757,
401845..401847,401851..401856))
/locus_tag="RCA_01705"
/note="active site"
/db_xref="CDD:132836"
misc_feature complement(401749..401763)
/locus_tag="RCA_01705"
/note="nucleophile elbow; other site"
/db_xref="CDD:132836"
misc_feature complement(399859..>400005)
/locus_tag="RCA_01705"
/note="Patatins and Phospholipases; Region:
Patatin_and_cPLA2; cl11396"
/db_xref="CDD:209300"
gene complement(403027..403311)
/locus_tag="RCA_01710"
/db_xref="GeneID:11860660"
CDS complement(403027..403311)
/locus_tag="RCA_01710"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299401.1"
/db_xref="GI:379022740"
/db_xref="GeneID:11860660"
/translation="MPSKNYFVKELVLRLSGQYQIKRIIDNHGYGKWVAYFLPESLNE
LIYKEELKIHYHDYDHQISANKEYRYLFKNSNITKYFIAHENSLFYRFYR"
gene complement(403420..404811)
/gene="dnaA"
/locus_tag="RCA_01715"
/db_xref="GeneID:11860661"
CDS complement(403420..404811)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="COG0593 ATPase involved in DNA replication
initiation"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_005299402.1"
/db_xref="GI:379022741"
/db_xref="GeneID:11860661"
/translation="MSTNQIILTDQGDNYLNVWSHVAQDLYNHYGETLYNSWFSKVNF
IESSLNTVILCAPTNFVRDWIKSKYSMVILQLFQHYNNTIKSVEIITKELPGASKTVI
ELPTKTFADIGSSELNAENIFSTLDVRFTFDNFVVGVPNELAYAAARAVAESTDAVSE
SNPLFLYGGVGLGKTHLMHAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISF
KEKFRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLIDNNRQIVISCDRSPSDLDNIED
RIKSRLGWGLVADVHSTTYELRLGILESKIEQMNVKIPKNVIDFLASKIVSNVRELEG
ALNKVIAHSNFTLKEITLENTQNILRDLLRSNERIITVEDIQKKVASRYNIKLSDMSS
SRRLREIARPRQIAMYLSKTLTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIEL
REEINLLMKILQN"
misc_feature complement(403423..404772)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature complement(404578..404763)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature complement(403954..404328)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(404287..404310)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(404020..404022,404119..404121,
404284..404307))
/gene="dnaA"
/locus_tag="RCA_01715"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(404116..404133)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(403981..403983)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(403429..403698)
/gene="dnaA"
/locus_tag="RCA_01715"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature complement(order(403495..403500,403507..403509,
403516..403530,403555..403563,403579..403581,
403600..403605,403627..403629))
/gene="dnaA"
/locus_tag="RCA_01715"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene complement(404842..405168)
/locus_tag="RCA_01720"
/db_xref="GeneID:11860662"
CDS complement(404842..405168)
/locus_tag="RCA_01720"
/note="COG0607 Rhodanese-related sulfurtransferase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299403.1"
/db_xref="GI:379022742"
/db_xref="GeneID:11860662"
/translation="MSVQNICCTKAYNILVSNDNVFLVDVRTREEWKQVGIPHKVIFL
SWQLNKDFEDNFLSIINDKIHAMIFLLFRSGYRSFTAANFITNIGYKNCYNISDIFEG
NNQNKG"
misc_feature complement(404845..405153)
/locus_tag="RCA_01720"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cl00125"
/db_xref="CDD:212175"
misc_feature complement(404953..404955)
/locus_tag="RCA_01720"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene 405494..405757
/locus_tag="RCA_01725"
/db_xref="GeneID:11860663"
CDS 405494..405757
/locus_tag="RCA_01725"
/note="COG2938 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299404.1"
/db_xref="GI:379022743"
/db_xref="GeneID:11860663"
/translation="MNKLNKNSLQKKLLYLSKNRGCKEMDYILGSFTEKYLSLMDEKK
LESYALILDQNDNDLYNWINNKSSAPSYLDIEIIDKLRKIAKV"
misc_feature <405551..405751
/locus_tag="RCA_01725"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2938"
/db_xref="CDD:32761"
gene 405770..409129
/locus_tag="RCA_01730"
/db_xref="GeneID:11860664"
CDS 405770..409129
/locus_tag="RCA_01730"
/note="COG1197 Transcription-repair coupling factor
(superfamily II helicase)"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="YP_005299405.1"
/db_xref="GI:379022744"
/db_xref="GeneID:11860664"
/translation="MLQQKFPAAAKSFFAIDNLTKNLKQDLILSVSNEEDVLQLYKQA
LFFSSNESIYYFPSYDTVPYDHASPSPSIVSKRAETLTKLTTNNSNSKLLITHAANLL
NKLPPKDFFSKYFLKLFPKMKFTTDELAMFLVENSFTRNTSSVDVGEFVVRGEIIDII
LPGPKAYRINFSWDYIESIKEFDIDTQISTKSCTELVITPVNEIVLNSETIGNFKNNY
LRNFGVNYTDNPLYEAVTSGRKFSGYEQLLPLFYNSCSNLVDYLNDPIIIFDNLSKQA
ILEFERSYNDFYAARSEANKFNRFYPTLAPTRLYFTISEIMELLEQKNNILISYDNSE
QATLIENIRSTSFIEKKTVFDKLFEIIKAHSSKKIVIGVVSLSGLERVKSIIQNYEYT
YNEINKLDEAKIGIINIAILPLNQSFDTKEYLFITVSELLEEKPSSINTNKKLKNILL
ELDNLAEGEFVVHKDHGIGKFLKLEALEIKGKLHDFLKILYAGNDKLYIPVENIEVIK
KYGNNNAELDKLGSVSWQRSKAKLKNRIKEIALHLIQIAAKRKLNTNASIEFDLEEYD
KFCAHFPFSETEDQLTAINDIREDLRSGMLMDRLICGDVGFGKTEVAMRAVFMVAKSL
NEYSPQVAVVVPTTILCSQHISRFTERFKGFGLNIKQLSSVISPKEAKIIRSELESGK
INIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVGQKEFLKQLKSSSHVLAMSATPIPR
TLQMSMTGLKELSIIATPPLNRLEVRTSVMSFNPVIIRDALLREHFRGGRSFYVVPRI
NDILDIEKQLKQIVPELSYKIVHGKMPYNKIDEVMSEFYAGKFDILVSTTIIESGIDI
QGANTMIIHKADMLGLSQLYQLRGRIGRGKMRGYAYLIVESHKKMTAHSLRRLEIIQN
SCALGSGFTIASHDMDLRGFGNLIGEEQSGQIREVGAELYQEMLEEQIALFKDEPVVS
EQPFIPTINLGLSVFIPDHYVSDSALKIGIYRRIGNLSNEIEVEKFKDEMIDRFGSLP
TEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNANMADKILKFVSTYHSQAKI
KPDNRLVFIKKLVGKNVIVEANQLLWNLAEI"
misc_feature 405770..409126
/locus_tag="RCA_01730"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 407132..407413
/locus_tag="RCA_01730"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:198126"
misc_feature 407558..407980
/locus_tag="RCA_01730"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 407585..407599
/locus_tag="RCA_01730"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 407891..407902
/locus_tag="RCA_01730"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 408095..408451
/locus_tag="RCA_01730"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(408155..408166,408230..408235,408308..408316)
/locus_tag="RCA_01730"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(408332..408334,408398..408400,408410..408412,
408419..408421)
/locus_tag="RCA_01730"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 408710..409006
/locus_tag="RCA_01730"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 409246..410682
/gene="murE"
/locus_tag="RCA_01735"
/db_xref="GeneID:11860665"
CDS 409246..410682
/gene="murE"
/locus_tag="RCA_01735"
/EC_number="6.3.2.13"
/note="COG0769 UDP-N-acetylmuramyl tripeptide synthase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase"
/protein_id="YP_005299406.1"
/db_xref="GI:379022745"
/db_xref="GeneID:11860665"
/translation="MLFNLKQLFQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFI
NDALNKGAVLVITDNEKNTAINKVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGK
SSVISYIAQLYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAE
IGIEYLAFEASSHGLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNH
LLPNAISILNSDIEEIEFIKAYLNKHNIKFITVGIKGDLQITRINSSLKGQNIDFTFN
NRKYSFNTPIIGSFQASNLLIAALSEYYTGFAFDEVIGSLVDVKPVKGRMQQIENTNI
FVDYSHTPDALEKALLELKNIQVLGSKLNVIFGCGGNRDKTKRSLMGQIAAKLADNVI
ITDDNPRLEDPKLIRAEIISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHE
NYQIIGNKKIPFDDAEIVKKYIKYHAVT"
misc_feature 409246..410664
/gene="murE"
/locus_tag="RCA_01735"
/note="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional; Region: murE;
PRK00139"
/db_xref="CDD:178894"
misc_feature 409285..409503
/gene="murE"
/locus_tag="RCA_01735"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 409534..410121
/gene="murE"
/locus_tag="RCA_01735"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 410209..410466
/gene="murE"
/locus_tag="RCA_01735"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 410818..412326
/locus_tag="RCA_01740"
/db_xref="GeneID:11860666"
CDS 410818..412326
/locus_tag="RCA_01740"
/note="COG0770 UDP-N-acetylmuramyl pentapeptide synthase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase"
/protein_id="YP_005299407.1"
/db_xref="GI:379022746"
/db_xref="GeneID:11860666"
/translation="MIWNSETLSKALGITISNSINCNEVQFNSKDVKKGDLFIALKGN
GDGHDYVLDAIDKGANAIIVSKHIDIVDKNKIILVDDCFEALQKMALYKRSSSKAKFI
AITGSVGKTSTKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAAS
TGLTYKLPLEVSYIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIR
ELVQILKPNIAMITNVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNK
ILSILKNLSIDKIYNFGASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHF
AENYIGVLLIIDILGKNLDIAANHLANISPTKGRGEMINIQNCCVICDYYNASPQSMK
AALEYLKQVPAENKTAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIY
NLLPFKIAKKYFKNVDELITHITVTDLFKNNELILIKGSRGIKLDKIVDCYK"
misc_feature 410890..411099
/locus_tag="RCA_01740"
/note="Mur ligase family, catalytic domain; Region:
Mur_ligase; pfam01225"
/db_xref="CDD:201670"
misc_feature 410896..412320
/locus_tag="RCA_01740"
/note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Region: murF; TIGR01143"
/db_xref="CDD:200077"
misc_feature 411208..411342
/locus_tag="RCA_01740"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature 411340..411822
/locus_tag="RCA_01740"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
misc_feature 411910..412152
/locus_tag="RCA_01740"
/note="Mur ligase family, glutamate ligase domain; Region:
Mur_ligase_C; pfam02875"
/db_xref="CDD:202441"
gene 412420..413505
/gene="mraY"
/locus_tag="RCA_01745"
/db_xref="GeneID:11860667"
CDS 412420..413505
/gene="mraY"
/locus_tag="RCA_01745"
/EC_number="2.7.8.13"
/note="COG0472 UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N-acetylglucosamine-1-phosphate
transferase"
/codon_start=1
/transl_table=11
/product="phospho-N-acetylmuramoyl-pentapeptide-
transferase"
/protein_id="YP_005299408.1"
/db_xref="GI:379022747"
/db_xref="GeneID:11860667"
/translation="MLYNLLLPHIHNSHIANLFHYITFRSGLAIIITLSLSFVTGPIL
IKFLRTLQKNGQPIRLDGPESHQTKAGTPTMGGIMIILSSCLATLLLADLTNKYIWIT
LFGFISFGIIGFMDDYAKVTKNNHYGVRGKSKLLLQGIISLIICILLEYTDKNPSHLL
NIPFFKNLSLDLGYFYIVFAIFVIVGSSNAVNLTDGLDGLATVPIAFTAGSFALISYL
VGNLIYSNYLQLTYIPNTGELTVLCAGLVGSCLGFLWFNAQPAEVFMGDTGSLSLGSI
LGIISVITKHEVVLSIVGGLFVVETTSVILQVYYFKATKGKRIFKMAPLHHHFEKHGW
EESKVVIRFWIISVIFALIGLSSLKLR"
misc_feature 412465..413502
/gene="mraY"
/locus_tag="RCA_01745"
/note="phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional; Region: mraY; PRK00108"
/db_xref="CDD:178869"
misc_feature 412603..413490
/gene="mraY"
/locus_tag="RCA_01745"
/note="Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of...;
Region: GT_MraY; cd06852"
/db_xref="CDD:133462"
misc_feature 412765..412770
/gene="mraY"
/locus_tag="RCA_01745"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133462"
misc_feature 413209..413220
/gene="mraY"
/locus_tag="RCA_01745"
/note="putative catalytic motif [active]"
/db_xref="CDD:133462"
misc_feature order(413371..413373,413389..413403)
/gene="mraY"
/locus_tag="RCA_01745"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:133462"
gene 413671..415323
/locus_tag="RCA_01750"
/db_xref="GeneID:11860668"
CDS 413671..415323
/locus_tag="RCA_01750"
/codon_start=1
/transl_table=11
/product="Actin polymerization protein RickA"
/protein_id="YP_005299409.1"
/db_xref="GI:379022748"
/db_xref="GeneID:11860668"
/translation="MAKETKETKETKETKETDINKLLTQENNALNTILRQVNELCEQN
KKLQGVIEIQNEAKELEKEHNRSLPWFKKFVKTVSNVKYIFIKSEEQLTHEAIKHNTK
ILKDIDNKIYNIVAKSAPLKQALQEEIKKNFEDLTKKDLSKDQRERLAELFFSYKDKP
ERFSALRMTDPLQFTNAEVLENQYNALNTTKQNIRNLISENSNIKELKEIQKQVAEIR
EEIPHTFFEKLNSIWQNVKNVFINNSEQVLAKNKESNTRAIRKIEEQLYSTKHQFEKL
IENQEKNIHDIIGKLPDNEKLQKIVSNLADHMTAKKEPILTTSSLPKPLENNMPPPPP
PPPLPQNNMPPPPPPPPPLPQNNMPPPPPPPPPPPPPLPQNNMPPPPPPPPMPTMAPA
QTETLEATTVKNQENQSHPSIDTSDLMKEIVGPRNLKEVKKIDAKAQDPRDLLLQSIR
GEHKLKKVEFDPNTGRPVAHSRSKPAQNVNKSNEIVEILARRVAMEMSDSSGSESDSD
SGNWSDVSTKSKVLKTKGERDARKGTNSKQVGRNSKSSFVRS"
misc_feature 413722..>414333
/locus_tag="RCA_01750"
/note="V-type ATP synthase subunit I; Validated; Region:
PRK05771"
/db_xref="CDD:235600"
gene complement(415634..415861)
/locus_tag="RCA_01755"
/db_xref="GeneID:11860669"
CDS complement(415634..415861)
/locus_tag="RCA_01755"
/note="COG2057 Acyl CoA:acetate/3-ketoacid CoA
transferase, beta subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA:3-ketoacid-coenzyme A transferase
subunit B"
/protein_id="YP_005299410.1"
/db_xref="GI:379022749"
/db_xref="GeneID:11860669"
/translation="MEHNAKDSRAKLLKEYSFPLTGKKVVNRIITDLGIFDINKEEMV
CMRKVDNVTIEEIRSKTEAEYIVNLLWRIKW"
misc_feature complement(415661..>415861)
/locus_tag="RCA_01755"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene complement(416371..416634)
/locus_tag="RCA_01760"
/db_xref="GeneID:11860670"
CDS complement(416371..416634)
/locus_tag="RCA_01760"
/note="COG1788 Acyl CoA:acetate/3-ketoacid CoA
transferase, alpha subunit"
/codon_start=1
/transl_table=11
/product="succinyl-CoA:3-ketoacid-coenzyme A transferase"
/protein_id="YP_005299411.1"
/db_xref="GI:379022750"
/db_xref="GeneID:11860670"
/translation="MNKIYPSAETDLEGMLYKMISSYIGENKICEQQYLDKILELELK
PQGTLAERIRAACMGIPPFYTKIGIGTIVEEGKEKRNLIARNI"
misc_feature complement(<416389..>416595)
/locus_tag="RCA_01760"
/note="SugarP_isomerase: Sugar Phosphate Isomerase family;
includes type A ribose 5-phosphate isomerase (RPI_A),
glucosamine-6-phosphate (GlcN6P) deaminase, and
6-phosphogluconolactonase (6PGL). RPI catalyzes the
reversible conversion of ribose-5-phosphate to...; Region:
SugarP_isomerase; cl00339"
/db_xref="CDD:206995"
gene 418014..420143
/locus_tag="RCA_01775"
/db_xref="GeneID:11860671"
CDS 418014..420143
/locus_tag="RCA_01775"
/note="COG1200 RecG-like helicase"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase RecG"
/protein_id="YP_005299412.1"
/db_xref="GI:379022751"
/db_xref="GeneID:11860671"
/translation="MLTILEKFLFSSVKTFINIREDTVSALKRLGINNIRDLLFYIPV
SYQNKTLSPNLTKVRDGEIIQTEIVIESISLPKNSNQPLKITARNDTGSLLLVFFHRP
PPFIFNKLKVGTSHIISGKVQFFDHHLQISHPEFIVNPTLAKEIEPIYSLTYLLSNKQ
LYSYIIKAMDIFERKCKGLEDKEVKDYLDSILQNLKVLHSLCHLRKSRNKSRNSEKMD
IMVKSWDDTRVCLNNAKKHLAAKELIANQISLFNVRTQISRRQGNIFPKAAGPQVNIL
NELGFELTPYQKQVIEEIELDQSDKVEMMRLLQGDVGSGKTLVALLTMVNVVVAGFQA
TLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGLARKNIMIQLENGEIEILLGT
HALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMF
GDMTISNLQGKPKNRLPIATNIMSTNKIEHVIEAINKKLILGERIYWICPLIERRKQE
EQEDDSVLMDVMNRFNSIENIYQGYTGIIHGKMKNEQKDIIMKQFKEGEIKILVATTV
IEVGIDVPEATLIIIENAEQFGLAQLHQLRGRVGRGNLQSYCILLYNPKRLGQVARGR
FEIMQQTNDGFYIAEQDLKLRGSGEILGVKQSGEIEFFFADLAEHYDLLLKANKFAEI
GSKGNLDFIDFQIKLFAKSQVSEFGLV"
misc_feature 418014..420116
/locus_tag="RCA_01775"
/note="RecG-like helicase [DNA replication, recombination,
and repair / Transcription]; Region: RecG; COG1200"
/db_xref="CDD:31393"
misc_feature 418215..418427
/locus_tag="RCA_01775"
/note="RecG_wedge_OBF: A subfamily of OB folds
corresponding to the OB fold found in the N-terminal
(wedge) domain of Escherichia coli RecG. RecG is a
branched-DNA-specific helicase, which catalyzes the
interconversion of a DNA replication fork to a...; Region:
RecG_wedge_OBF; cd04488"
/db_xref="CDD:72960"
misc_feature order(418236..418238,418257..418259,418308..418310,
418326..418328,418404..418406)
/locus_tag="RCA_01775"
/note="ssDNA binding site; other site"
/db_xref="CDD:72960"
misc_feature order(418356..418358,418362..418364,418368..418370,
418425..418427)
/locus_tag="RCA_01775"
/note="generic binding surface II; other site"
/db_xref="CDD:72960"
misc_feature 418929..419333
/locus_tag="RCA_01775"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 418950..418964
/locus_tag="RCA_01775"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 419244..419255
/locus_tag="RCA_01775"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 419442..419846
/locus_tag="RCA_01775"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(419511..419522,419625..419630,419703..419711)
/locus_tag="RCA_01775"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(419727..419729,419793..419795,419805..419807,
419814..419816)
/locus_tag="RCA_01775"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(420440..420607)
/locus_tag="RCA_01780"
/db_xref="GeneID:11860672"
CDS complement(420440..420607)
/locus_tag="RCA_01780"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299413.1"
/db_xref="GI:379022752"
/db_xref="GeneID:11860672"
/translation="MLRIFYEKLGSIFFNHKAEKHFKIHMLLDPEHEQIAIDLLKQIN
INNSSLLAIQK"
gene complement(421027..421773)
/locus_tag="RCA_01785"
/db_xref="GeneID:11860673"
CDS complement(421027..421773)
/locus_tag="RCA_01785"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299414.1"
/db_xref="GI:379022753"
/db_xref="GeneID:11860673"
/translation="MIITRNKHQSNYQDLLKTLAIIAMIIDHMGLYLYPELTIMRVIG
RTVMPVFCFFTGYNFHDKPKTKIIIAGILLQIYTTVLFKQFITTNILIPIYLGQCYIY
YFRKSLIHFFYSGYCHVIIMAILFHISWYLVDYGTIVIAIMILGFIAQHEQANLKLSC
FIAIFITCMHSTLFTLAIPMSDFNFSNTDLILNLTILTVTYILMIISDYSQKIAINLK
WISRNILYIYCIHSMILQFIYKYTYSFKNW"
misc_feature complement(<421237..421743)
/locus_tag="RCA_01785"
/note="TraX protein; Region: TraX; pfam05857"
/db_xref="CDD:147811"
gene complement(421770..423167)
/locus_tag="RCA_01790"
/db_xref="GeneID:11860674"
CDS complement(421770..423167)
/locus_tag="RCA_01790"
/note="COG0728 Uncharacterized membrane protein, putative
virulence factor"
/codon_start=1
/transl_table=11
/product="virulence factor mviN"
/protein_id="YP_005299415.1"
/db_xref="GI:379022754"
/db_xref="GeneID:11860674"
/translation="MGDSINVAFKLPNLFRRIFAEGALSSIFIPIYNEKMLISKRAAN
NFSGTVFTLLLLTLIIIIALMQIFMPQLMLFIAPGFHGKKEKFELTIFLCRITIPYLI
FVSLTALLGGILNSIKKFTAFAFSPVILSVCVIICTLMLDDYIESTISISLSLIIAGI
LQVSFMFVCVKRADLNFPIIFNPSDPDVKKLLINMGPAIISSGVQQLNLFISQSIASF
IEGAISILAYADRIYQFPLSIIGTSFSTILLPTLSKIYKSNDLVSAKKIQNNAIRMGL
LLSLPATFGIIILSHPIINIIYERGVFTSQDTTNTAEAISAFALGLPAFILAKILTPI
FYANGDTKTPLKITLFSIIINTGINLLLMDSLKHIGIAVGTSIAAWYNLGLLYSYTTK
QNKLHIEANIKLFCGKILLCCIIMSVIIALIKHYCLEYFYSEYLLIKVCMLGSTIAVG
IGSFFGTAYLLKVVL"
misc_feature complement(421848..423167)
/locus_tag="RCA_01790"
/note="MviN-like protein; Region: MVIN; pfam03023"
/db_xref="CDD:111867"
gene 423154..423426
/locus_tag="RCA_01795"
/db_xref="GeneID:11860675"
CDS 423154..423426
/locus_tag="RCA_01795"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299416.1"
/db_xref="GI:379022755"
/db_xref="GeneID:11860675"
/translation="MLSPIGVEPNSDAINCSRTRPNMREINVQKATMTPERNNVTVYF
CVLFLKSILLHGYHIIIASDCREYGKARGNKNMLYKLAFFTGLLRE"
gene complement(423525..424052)
/locus_tag="RCA_01800"
/db_xref="GeneID:11860676"
CDS complement(423525..424052)
/locus_tag="RCA_01800"
/EC_number="3.6.1.1"
/note="COG0221 Inorganic pyrophosphatase"
/codon_start=1
/transl_table=11
/product="inorganic pyrophosphatase"
/protein_id="YP_005299417.1"
/db_xref="GI:379022756"
/db_xref="GeneID:11860676"
/translation="MFIDKIKAKANNDEINVIIEIPMNSGPIKYEFDKESGAVFVDRF
MQTTMSYPCNYGFIPHTLSNDGDPVDVLVVSHHAVVPGSVIKCRTIGVLMMEDESGLD
EKIIAVPTSRLDITFDHIKELDNLCEMLRKRIVHFFEHYKDLEKGKWVKVTGWGNKAK
ADTLINEGIDRASQE"
misc_feature complement(423543..424016)
/locus_tag="RCA_01800"
/note="Inorganic pyrophosphatase. These enzymes hydrolyze
inorganic pyrophosphate (PPi) to two molecules of
orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers;
Region: pyrophosphatase; cd00412"
/db_xref="CDD:29533"
misc_feature complement(order(423819..423824,423981..423986))
/locus_tag="RCA_01800"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29533"
misc_feature complement(order(423627..423632,423888..423890,
423924..423926,423966..423968))
/locus_tag="RCA_01800"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29533"
misc_feature complement(order(423747..423749,423762..423764,
423843..423845,423858..423860,423960..423962))
/locus_tag="RCA_01800"
/note="metal binding sites [ion binding]; metal-binding
site"
/db_xref="CDD:29533"
gene complement(424304..424690)
/locus_tag="RCA_01805"
/db_xref="GeneID:11860677"
CDS complement(424304..424690)
/locus_tag="RCA_01805"
/note="COG2332 Cytochrome c-type biogenesis protein CcmE"
/codon_start=1
/transl_table=11
/product="cytochrome c-type biogenesis protein CcmE"
/protein_id="YP_005299418.1"
/db_xref="GI:379022757"
/db_xref="GeneID:11860677"
/translation="MQKRVRSRLITIIICFCSAFLGIGIILYNLENNIVFFLPPSKIN
TIEQDKELRVGGLVKTSSINKIAADKISFIITDNIKDLEILYQGILPALFREGQGIIA
IGQLSDGKFMARQLLAKHDENYRPTR"
misc_feature complement(424313..424690)
/locus_tag="RCA_01805"
/note="cytochrome c-type biogenesis protein CcmE;
Reviewed; Region: PRK13254"
/db_xref="CDD:183920"
gene complement(424792..425409)
/locus_tag="RCA_01810"
/db_xref="GeneID:11860678"
CDS complement(424792..425409)
/locus_tag="RCA_01810"
/note="COG1999 Uncharacterized protein SCO1/SenC/PrrC,
involved in biogenesis of respiratory and photosynthetic
systems"
/codon_start=1
/transl_table=11
/product="Sco2 protein"
/protein_id="YP_005299419.1"
/db_xref="GI:379022758"
/db_xref="GeneID:11860678"
/translation="MKMQSNVIKIIIIISLLIGVGALYLLLSLRTPTKPLAGQVNIYE
DNVKIGGDFKLIDQNGEIFNSDELKGNLSLIYFGFTRCPDICPTSLNKMTEIVEMLNK
HNIDIIPIFITIDSKRDTPIVLKEYLKHFHPKFIGLTGNEQQIKDITNKFKVFYARVN
NDDDDPNYMFDHSSFIYLMDTNGKYLKHFYLDSSPKEIIEFLRNE"
misc_feature complement(424798..425301)
/locus_tag="RCA_01810"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature complement(424840..425265)
/locus_tag="RCA_01810"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature complement(order(424894..424896,425152..425154,
425164..425166))
/locus_tag="RCA_01810"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene complement(425415..426977)
/gene="secD"
/locus_tag="RCA_01815"
/db_xref="GeneID:11860679"
CDS complement(425415..426977)
/gene="secD"
/locus_tag="RCA_01815"
/note="COG0342 Preprotein translocase subunit SecD"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecD"
/protein_id="YP_005299420.1"
/db_xref="GI:379022759"
/db_xref="GeneID:11860679"
/translation="MPNLPKWKIFLSIICTVFATICALPNFMQVNSKFLPHDSVNLGL
DLRGGAHLLLDVDFETYLNDSMENLADTLRKNFREDKIGYKNLLVNQNQNSIQLELRT
SKELKQLKKIINKIDSEIIVEVNENKIKLRYSDSRLNDLLNKVVDQSIEIVRMRVDST
GTKEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVP
VGSMLIKGDSESHGEYYVVIKKKVVLGGDQLTTASVSFDQNSQAVVTFSFNNLGSKIF
GEITKNNTGKRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESAHELALLLRAGSL
PAPLNIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMIWSYGVLGLFANIALSLAL
LYILALLSLFQATLTLPGIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGF
ASAFATILDSNLTTLIVASLLYIFGVGAIKGFAITLTIGIISSMFSAIIITKLLIDIW
VKYFKSKKLGLV"
misc_feature complement(425421..426959)
/gene="secD"
/locus_tag="RCA_01815"
/note="preprotein translocase subunit SecD; Reviewed;
Region: secD; PRK05812"
/db_xref="CDD:180271"
misc_feature complement(425484..426176)
/gene="secD"
/locus_tag="RCA_01815"
/note="protein-export membrane protein, SecD/SecF family;
Region: 2A0604s01; TIGR00916"
/db_xref="CDD:162105"
gene complement(426961..427389)
/gene="yajC"
/locus_tag="RCA_01820"
/db_xref="GeneID:11860680"
CDS complement(426961..427389)
/gene="yajC"
/locus_tag="RCA_01820"
/note="COG1862 Preprotein translocase subunit YajC"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit YajC"
/protein_id="YP_005299421.1"
/db_xref="GI:379022760"
/db_xref="GeneID:11860680"
/translation="MSAITQDNQANHNDTIEIQETEVVPVETNSLQSGLTSLIPMILI
FAIFYFLLLRPQEKRRKEREKLANKVKKGEEVLTNSGIYGIVSKVSANDPNIEIEIAK
DVHIKILKSTIIDITSHSKEVPVKKENNKKDKKVSSAKSS"
misc_feature complement(427036..427308)
/gene="yajC"
/locus_tag="RCA_01820"
/note="preprotein translocase subunit YajC; Validated;
Region: yajC; PRK05585"
/db_xref="CDD:180149"
gene complement(427898..427972)
/locus_tag="RCA_t05305"
/db_xref="GeneID:11860681"
tRNA complement(427898..427972)
/locus_tag="RCA_t05305"
/product="tRNA-Gly"
/db_xref="GeneID:11860681"
gene complement(429037..429144)
/locus_tag="RCA_01825"
/db_xref="GeneID:11860682"
CDS complement(429037..429144)
/locus_tag="RCA_01825"
/codon_start=1
/transl_table=11
/product="guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase"
/protein_id="YP_005299422.1"
/db_xref="GI:379022761"
/db_xref="GeneID:11860682"
/translation="MRQLGDPYYSYQIEVAIRLAEFVAEEVITAILDRK"
misc_feature complement(<429049..429144)
/locus_tag="RCA_01825"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:223394"
gene complement(429948..431318)
/locus_tag="RCA_01830"
/db_xref="GeneID:11860683"
CDS complement(429948..431318)
/locus_tag="RCA_01830"
/note="COG2239 Mg/Co/Ni transporter MgtE (contains CBS
domain)"
/codon_start=1
/transl_table=11
/product="magnesium transporter"
/protein_id="YP_005299423.1"
/db_xref="GI:379022762"
/db_xref="GeneID:11860683"
/translation="MPNFNIFKRILPDHHDQFAEIFDQINDLLEDHNYDAAANRLAEL
HYADLADFLDNLNNKIYKIIIPLLQDKIKPETLVSLNAYSKPLIIETLGIKKSAELIN
KLVIEDAIEVVIDLDDDIKDLILSNLTKEKKHQITVGCTYPENTVGRVIERDFINLQE
NWTVEESLNFIKNVKNDFYAAIVTDNKLRPIGIISLSTLIKGKKNELIKDLMSKDFKL
ADAFTDLNELSFIFRQYALTIVPVVNKSGKLVGSVSIDNIIYIIEEQAGKDILSLSGV
HTQDTFFNVLYTVKHRFPWLFVNLITACMTSLIINHFNDTIAKLVTLAATMPIVASMG
GNAGTQVMTVTVRALANKDIHYNNVNKVILKEIAVSAFNGFVLAIIGAGLSFIMLLDL
NLSVIFAIAVILNFLVAGLFGSAIPIILHYFDIDPAAGSGVFLTTITDALGFLTFLSL
AHIFLV"
misc_feature complement(429951..431255)
/locus_tag="RCA_01830"
/note="Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism]; Region: MgtE;
COG2239"
/db_xref="CDD:32420"
misc_feature complement(430884..431189)
/locus_tag="RCA_01830"
/note="MgtE intracellular N domain; Region: MgtE_N;
pfam03448"
/db_xref="CDD:146204"
misc_feature complement(430533..430847)
/locus_tag="RCA_01830"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domain in the
magnesium transporter, MgtE. MgtE and its homologs are
found in eubacteria, archaebacteria, and eukaryota.
Members of this family transport Mg2+ or other...; Region:
CBS_pair_Mg_transporter; cd04606"
/db_xref="CDD:73106"
misc_feature complement(429966..430340)
/locus_tag="RCA_01830"
/note="Divalent cation transporter; Region: MgtE;
pfam01769"
/db_xref="CDD:110745"
gene complement(431732..432061)
/locus_tag="RCA_01835"
/db_xref="GeneID:11860684"
CDS complement(431732..432061)
/locus_tag="RCA_01835"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_005299424.1"
/db_xref="GI:379022763"
/db_xref="GeneID:11860684"
/translation="MREIIAVVVEELNVKIENGVISSDHIHIFANIPPHIKVSEFVQK
AKGRSSKKIQEEFPILRKKYWGRHLWVRGYFSATSGNVTDDMINEYINRYTDAHEPAM
TTNIRLE"
misc_feature complement(431783..>432061)
/locus_tag="RCA_01835"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene 432197..432466
/locus_tag="RCA_01840"
/db_xref="GeneID:11860685"
CDS 432197..432466
/locus_tag="RCA_01840"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299425.1"
/db_xref="GI:379022764"
/db_xref="GeneID:11860685"
/translation="MAQHGKLKLSHLEDGGFNHQRDYKNLDIVIVTTLLECGSEQNKC
IGRRVICYNCTIVGQTFGNKRKLEVKIKSKVPKQKNFRVMVSEQR"
gene complement(432519..432605)
/locus_tag="RCA_t05307"
/db_xref="GeneID:11860686"
tRNA complement(432519..432605)
/locus_tag="RCA_t05307"
/product="tRNA-Leu"
/db_xref="GeneID:11860686"
gene complement(432793..433653)
/locus_tag="RCA_01845"
/db_xref="GeneID:11860687"
CDS complement(432793..433653)
/locus_tag="RCA_01845"
/note="COG0647 Predicted sugar phosphatases of the HAD
superfamily"
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="YP_005299426.1"
/db_xref="GI:379022765"
/db_xref="GeneID:11860687"
/translation="MNILKLKNIFDIIDNYDVFLFDLWGVIIEGGHTYQNVVQNINKI
IERKKVYFVTNAPQNIFSLHQTIKSWGLNAEPEMIISSGEIAVQMILESKERFGIEKP
VIYHLGHLENDIINGIQYSITDDIKKANIFLMTIYRDENENLDLNEFDELFKIVVERK
MVNICANPDLGINQHGVYRYCSGYYAEKIKQLGGEIIYSGKPYEEIYSKIFKECHNTP
KNRILMIGDTFYTDILAANRLGIDSALVLTGNSRAYHINFDNIDEKLDSLTKSAIKQS
IMPNFMLSLS"
misc_feature complement(432910..433629)
/locus_tag="RCA_01845"
/note="HAD-superfamily class IIA hydrolase, TIGR01459;
Region: HAD-SF-IIA-hyp4"
/db_xref="CDD:130526"
misc_feature complement(433330..433599)
/locus_tag="RCA_01845"
/note="Haloacid dehalogenase-like hydrolase; Region:
Hydrolase_6; pfam13344"
/db_xref="CDD:205524"
misc_feature complement(432916..>433104)
/locus_tag="RCA_01845"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
gene 433761..436187
/gene="gyrB"
/locus_tag="RCA_01850"
/db_xref="GeneID:11860688"
CDS 433761..436187
/gene="gyrB"
/locus_tag="RCA_01850"
/note="COG0187 Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_005299427.1"
/db_xref="GI:379022766"
/db_xref="GeneID:11860688"
/translation="MSEIEENFNKSSYGADSIKVLKGLEAVRKRPGMYIGDVGNGSGL
HHMIYEVVDNAIDESLAGYCDLVQVILNKNGSVTVSDNGRGIPVEIHEEEGISAAEVI
MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEA
PLAVVKENIDKKGTEVTFFPSVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRF
EEAKEAEFYYTGGIEAYVKYIDRAKHAIHPCIIVNVDNAESGINLELAMHWNDSYYEN
ILCFTNNIRQRDGGTHLSAFKSAITRVITSYLDTTGLNKKVKNDFSGEDTREGLCCVL
SVKVPDPKFSSQTKDKLVSSEVRPVVENIVYTKVLEWFEEHPAEARAIIAKIMEAANA
REAARKAREFTRRKSALEISNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSK
IQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGVDNQEFSLEKLRYHKVIIMT
DADVDGSHIRTLLLTFFYRNMPELINKGYLYIAQPPLYKVKKGAAEFYLKNEQALQDY
LIKSTINDATLILDGKEQLVDGNLEELINTVVKFNACLDHASKKFNRSITEILAINDL
LNNKIFDAESDLRCKKALDVLNSLEESPDKTNWEVLKHENKIEFFRFNRGLKESKILL
KEQLESFEFVQISKLALTIFDIFCKQLKLIVKSQECDILTPSQLLNTIIACGKKGINI
QRFKGLGEMNSNQLWETTLDPEKRTLLQVRVAEVDEAEGIFSTLMGDVVEPRRLFIQA
NALNVVNLDV"
misc_feature 433785..436184
/gene="gyrB"
/locus_tag="RCA_01850"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 433890..>434039
/gene="gyrB"
/locus_tag="RCA_01850"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 433920..433922
/gene="gyrB"
/locus_tag="RCA_01850"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(434007..434009,434013..434015)
/gene="gyrB"
/locus_tag="RCA_01850"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 434448..434909
/gene="gyrB"
/locus_tag="RCA_01850"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 434604..434606
/gene="gyrB"
/locus_tag="RCA_01850"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(434778..434780,434787..434792,434796..434798)
/gene="gyrB"
/locus_tag="RCA_01850"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(434796..434798,434802..434804)
/gene="gyrB"
/locus_tag="RCA_01850"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 435045..435389
/gene="gyrB"
/locus_tag="RCA_01850"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(435063..435068,435075..435077,435285..435287,
435291..435293,435297..435299)
/gene="gyrB"
/locus_tag="RCA_01850"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(435063..435065,435285..435287)
/gene="gyrB"
/locus_tag="RCA_01850"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 435957..436151
/gene="gyrB"
/locus_tag="RCA_01850"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 436393..437652
/locus_tag="RCA_01855"
/db_xref="GeneID:11860689"
CDS 436393..437652
/locus_tag="RCA_01855"
/EC_number="2.5.1.7"
/note="COG0766 UDP-N-acetylglucosamine enolpyruvyl
transferase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="YP_005299428.1"
/db_xref="GI:379022767"
/db_xref="GeneID:11860689"
/translation="MQKLIIYGGKPLRGSINISGAKNAVLPIMAASILTDKLHITNVP
KLTDVSTMKGLLRSHGADIETIEHQDEFELIINTRNINNFTADYDIVRKMRASIWVLG
PLLTKYGKAKVSLPGGCAIGARQVDLHIAVLKAMGAMIEIEGGYINASSKGRLKGTHF
IFDKVSVGATINAILAAVLAEGETLLFNCGREPEIVDLCNCLIKMGADIIGVGTSEIT
IKGKDALNKVSYKVLSDRIEAGTYMLAAAITKGDVKICGIDYHIIENLALKLIETGIK
VVPIDNGVQVMYEGKLNAVNLETNPYPGFATDLQAQFMSLMTLSSGVSMITENIFENR
FMHVPELCRMGADILVRGNKAIVRGVEMLKGAEVMASDLRASVSLILAGLSTNSKTVL
HRIYHLDRGFQDLEKKLSNCGADIKRV"
misc_feature 436393..437646
/locus_tag="RCA_01855"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 436426..437628
/locus_tag="RCA_01855"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(436444..436455,437086..437097)
/locus_tag="RCA_01855"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(436459..436461,436675..436677,436687..436689,
436762..436779,436882..436884,436891..436896,
437314..437316)
/locus_tag="RCA_01855"
/note="active site"
/db_xref="CDD:30128"
gene 437821..438204
/gene="rpoZ"
/locus_tag="RCA_01860"
/db_xref="GeneID:11860690"
CDS 437821..438204
/gene="rpoZ"
/locus_tag="RCA_01860"
/EC_number="2.7.7.6"
/note="COG1758 DNA-directed RNA polymerase, subunit
K/omega"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit omega"
/protein_id="YP_005299429.1"
/db_xref="GI:379022768"
/db_xref="GeneID:11860690"
/translation="MARVTAEDCNKIIPDRFRLVVLATRYAKLLNYKVETSYSKKEKR
DKPPVIALRRIAAGKVSVAQLEQDLINSLCTRNIIEPLANQDDLEDVEEKFEYLPEVY
VGEDYSDLDDQIFIDENGEYDERDK"
misc_feature 437821..438003
/gene="rpoZ"
/locus_tag="RCA_01860"
/note="DNA-directed RNA polymerase, omega subunit; Region:
rpoZ; TIGR00690"
/db_xref="CDD:188073"
gene 438205..438600
/gene="acpS"
/locus_tag="RCA_01865"
/db_xref="GeneID:11860691"
CDS 438205..438600
/gene="acpS"
/locus_tag="RCA_01865"
/EC_number="2.7.8.7"
/note="COG0736 Phosphopantetheinyl transferase (holo-ACP
synthase)"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_005299430.1"
/db_xref="GI:379022769"
/db_xref="GeneID:11860691"
/translation="MLVGIGTDIVQIPRIEKILHLYPELFAKKILTLKELKEFALLDK
TNRATFVAKHFAAKEAVSKAFGVGIGQGINFKDITILNDDLGKPIAEVSSNYTKKYSF
FNIHLSLSDDYPVCVAFAVVEGGYNVIPV"
misc_feature 438205..438579
/gene="acpS"
/locus_tag="RCA_01865"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene complement(438840..439688)
/locus_tag="RCA_01870"
/db_xref="GeneID:11860692"
CDS complement(438840..439688)
/locus_tag="RCA_01870"
/note="COG0760 Parvulin-like peptidyl-prolyl isomerase"
/codon_start=1
/transl_table=11
/product="protein export protein PrsA precursor"
/protein_id="YP_005299431.1"
/db_xref="GI:379022770"
/db_xref="GeneID:11860692"
/translation="MKKLSVIFLSVSMLSSIAFADKDKVVATYKGGEVKESQIMKEFK
PQLNIQSGETIKSFDDFSLQDQEKLIKIYVNNLLLKEEVAKSHITASKEFQEKLENAK
NQLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANEIKTK
LSKGGNFTKLAEELSLDKASASNGGVIGDIILNQPGQLVPEFEKKAFALKVNEVSTPV
KTDFGWHIIKVLEKKPVPIPTKEDAKVTIDNILAAAILKQYISDLEAKADLKIMLPKA
GSKAGE"
misc_feature complement(438876..439664)
/locus_tag="RCA_01870"
/note="peptidylprolyl isomerase; Reviewed; Region: prsA;
PRK02998"
/db_xref="CDD:179522"
misc_feature complement(438996..439256)
/locus_tag="RCA_01870"
/note="PPIC-type PPIASE domain; Region: Rotamase;
pfam00639"
/db_xref="CDD:201365"
gene 439899..442619
/locus_tag="RCA_01875"
/db_xref="GeneID:11860693"
CDS 439899..442619
/locus_tag="RCA_01875"
/note="COG0653 Preprotein translocase subunit SecA
(ATPase, RNA helicase)"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecA"
/protein_id="YP_005299432.1"
/db_xref="GI:379022771"
/db_xref="GeneID:11860693"
/translation="MLSILKKLFGTANDRTVKKLFSEITKINSLEPVIQKLSDEELKN
KTVEFKEKLKNGATLDDILYEAFAVVREAARRVCGMRHFDVQLIGGLILHQGMITEMR
TGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM
SDEAKRAAYNADITHATNNELGFDYLRDNMKYSIQERVLRPFNFAIIDEVDSILIDEA
RTPLVISGPVNDNSELYTKIDKIVRQLKAGDFEKDEKLKTIHLTELGITHIESLLSNE
NIIKPDSGLYDFENLTLVHYINQALRAHNMFNVDVDYLVRDGQVMIIDEFTGRVMEGR
RYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIY
NLDVVAVPTHNKVTRVDLDDEIYGSKKEKYDAILKLIKDCYNRGQPILVGTISIEKSE
ELSSVLNKEKIPHKILNAKFHEQEAFIIAQAGRFRAVTIATNMAGRGTDIMLGGNPEM
LIEQLAKDHSYEAKIVDIKAQIAEEKKKVIEAGGLFVIGTERHESRRIDNQLRGRSGR
QGDPGKTQFFLSLDDDLMRIFASERISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVE
GHNYEIRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSYDFLNSTTAELAKKIVLTFMP
AGSYREDWDIENLSVELHRIFSIKFDHNLVSKNDVTEEEITKSVIQMAHDIYKSKEES
YSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQQDPLSEYKREAFNLF
EQMLDNLKELFIQTVYHFHIDLKYVQKEDVSLEHKKLQKNMQESREDPAFSKYNAGSS
LEIDLKPVVSRINPKDRNPEDPTSWGRVSRNELCPCRSGKKYKYCHGANA"
misc_feature 439899..442358
/locus_tag="RCA_01875"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 440169..>440540
/locus_tag="RCA_01875"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 440577..440933
/locus_tag="RCA_01875"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 441123..441626
/locus_tag="RCA_01875"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(441228..441239,441297..441302,441369..441377)
/locus_tag="RCA_01875"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(441393..441395,441573..441575,441585..441587,
441594..441596)
/locus_tag="RCA_01875"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 442554..442607
/locus_tag="RCA_01875"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 442620..442769
/locus_tag="RCA_01880"
/db_xref="GeneID:11860694"
CDS 442620..442769
/locus_tag="RCA_01880"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase/HEPN domain-containing
protein"
/protein_id="YP_005299433.1"
/db_xref="GI:379022772"
/db_xref="GeneID:11860694"
/translation="MKTTLPERSLKISAILNFIVQQILDIASDKITMIILYGSFTKFE
LMVNR"
gene 442920..443228
/locus_tag="RCA_01885"
/db_xref="GeneID:11860695"
CDS 442920..443228
/locus_tag="RCA_01885"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase/HEPN domain-containing
protein"
/protein_id="YP_005299434.1"
/db_xref="GI:379022773"
/db_xref="GeneID:11860695"
/translation="MAGFLIDSKNNLGRARVLRHSTFYLYQAIASVYSTILLVFSNYK
LHDIKKLGSRAKDYNSELLQVFPKQSMLEQKECFRLLQKGYVDARYYKHKLLKNNFYI
"
misc_feature 442929..>443198
/locus_tag="RCA_01885"
/note="HEPN domain; Region: HEPN; cl00824"
/db_xref="CDD:207212"
gene 443848..444057
/locus_tag="RCA_01890"
/db_xref="GeneID:11860696"
CDS 443848..444057
/locus_tag="RCA_01890"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299435.1"
/db_xref="GI:379022774"
/db_xref="GeneID:11860696"
/translation="MVAKNIRCISENIQDDEIYKLLLSCGTDISAKVEFRGVWFSIYE
YDGKTVSKIAEFKIALVGGESKIIT"
gene 444167..444382
/locus_tag="RCA_01895"
/db_xref="GeneID:11860697"
CDS 444167..444382
/locus_tag="RCA_01895"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299436.1"
/db_xref="GI:379022775"
/db_xref="GeneID:11860697"
/translation="MSKAKAKTASKNNPTSREQAKEYFHNGQKIKPVKLIAAQNSFLA
AEYESSGDLVVGINGQPLPWGIVKSLS"
gene 444417..444491
/locus_tag="RCA_t05309"
/db_xref="GeneID:11860698"
tRNA 444417..444491
/locus_tag="RCA_t05309"
/product="tRNA-Ala"
/db_xref="GeneID:11860698"
gene 444915..445040
/locus_tag="RCA_01900"
/db_xref="GeneID:11860699"
CDS 444915..445040
/locus_tag="RCA_01900"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system, M
subunit"
/protein_id="YP_005299437.1"
/db_xref="GI:379022776"
/db_xref="GeneID:11860699"
/translation="MRAAKEVEDHNYALYGEMINTICALTQINMFLHVEGQAHIH"
gene 445062..445223
/locus_tag="RCA_01905"
/db_xref="GeneID:11860700"
CDS 445062..445223
/locus_tag="RCA_01905"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system, M
subunit"
/protein_id="YP_005299438.1"
/db_xref="GI:379022777"
/db_xref="GeneID:11860700"
/translation="MLLENDTLMDFDIVVASPLLSLEKLGLGMKNAANDEYNRFKRGT
HPKAIIFLI"
gene 445479..445784
/locus_tag="RCA_01910"
/db_xref="GeneID:11860701"
CDS 445479..445784
/locus_tag="RCA_01910"
/note="COG0286 Type I restriction-modification system
methyltransferase subunit"
/codon_start=1
/transl_table=11
/product="Type I restriction-modification system, M
subunit"
/protein_id="YP_005299439.1"
/db_xref="GI:379022778"
/db_xref="GeneID:11860701"
/translation="MDFLKQVKGRIFRRRAYLLIKLLIKNEKTIEKYSHLASIEEMRR
NKYNLNIPRYTVYCDTYEEEEEIDVTELQQEMQQLQKGLVNIRPQMDTHLKDFEINV"
misc_feature <445536..445781
/locus_tag="RCA_01910"
/note="Type I restriction-modification system
methyltransferase subunit [Defense mechanisms]; Region:
HsdM; COG0286"
/db_xref="CDD:30634"
gene 446597..447991
/locus_tag="RCA_01915"
/db_xref="GeneID:11860702"
CDS 446597..447991
/locus_tag="RCA_01915"
/note="COG0591 Na+/proline symporter"
/codon_start=1
/transl_table=11
/product="Sodium/pantothenate symporter"
/protein_id="YP_005299440.1"
/db_xref="GI:379022779"
/db_xref="GeneID:11860702"
/translation="MLKIPVNNIIVFIYLISILLIGIYYRAKHSSFKNYANVESKVRN
SKLLLIATIFASSVGGATTFGIMEKVFLGYAYYAYALILTIPIDILIAIYIVPLITKH
YGAESIGDILSTYYGTIGRFIGGVSSVIVSVGFLAAQISVSGYIFQYILDINYVNGVI
LSYSIVLIYTTIGGLQSIVSTNLVQFLAMIIAIPTITFISLNKIGFIDFINNFHTENA
NFDQSNLLSYTITAALSFSVMNLYPTFIQRALINKNPTQTTKAIYAKSAIYLFFLICI
TLNGLIAYKLYPTQPSNLVLPYLINKIIPPLMQGIVMSGLLAAVMSTADSDLNVTSIA
LVKDIINLILKVKNQQKLLLIARIINIIIGSLAIIVALKFSNVIDLVVFFTGFWGPVI
LVPLITTLFGIRVSEKIMVLSSLGGAATFLIWEYYSLYLKYFNLKGVFVGTMTSLIIF
ILGRYYSNVVVRKD"
misc_feature 446735..447955
/locus_tag="RCA_01915"
/note="Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding domain;
Region: SLC5sbd; cd10322"
/db_xref="CDD:212032"
misc_feature order(446759..446761,446768..446770,447551..447553,
447560..447565)
/locus_tag="RCA_01915"
/note="Na binding site [ion binding]; other site"
/db_xref="CDD:212032"
gene complement(448716..450632)
/gene="uvrC"
/locus_tag="RCA_01920"
/db_xref="GeneID:11860703"
CDS complement(448716..450632)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="COG0322 Nuclease subunit of the excinuclease
complex"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit C"
/protein_id="YP_005299441.1"
/db_xref="GI:379022780"
/db_xref="GeneID:11860703"
/translation="MTSDATGSELIKSKLVDAPECAGVYRMFDVNKQVIYVGKAKNLK
KRLTNYIKLDLDNKTLRMIANTCFLEYSVTSSEVEALLLEAQLIKKFQPKFNILLKDD
KSFPFIKLRLDHDFPQLLKYRGRTRTLSDGKFFGPFASATAVNTTLTELQKIFKLRSC
TDNYFNSRNRPCLQYEIKRCYAPCIGKINKKDYAELVIQVTAFLQGHTKELQENLSKK
MEELSSHMYFEEAAEIRDRIKALSYVQLKAGISDIVKDADIMAIVEKNGHYCVEVCLY
RAGQACGTIPYFPTAMGNNTKEAILKYFLLQFYQKQQLPSEIIINNEVEDKEDVIEAI
KKINNITKLNIIIPISGGKAKLVQNATTNALFSLEQYLKKFAKNQEIMLEIKELFDLS
EIPERIEIYDNSHIQGKFAVGVMVVAGKSGFDKKEYRVFSLSSHDSITGFSTLTNNLD
PVVKQQYDTNGTYNTTVGDDYEMFRQVLTRRLTRLKQEPYKLPSLMIIDGGRGHVGIV
KEVMDKFKMNIPFVCMSKGPDRNAGLEQFHMVGKEVFTLDKNLPVMKYLQILRDAAHS
FAIKHHRLGRSRTIKLSSLDDIKGIGETRKKSLLHYFGSYKAVCDATIDELVKVHGIS
KSLAEMIFRTLHQS"
misc_feature complement(448719..450611)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="excinuclease ABC subunit C; Validated; Region:
uvrC; PRK00558"
/db_xref="CDD:179065"
misc_feature complement(450342..450581)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="Catalytic GIY-YIG domain of nucleotide excision
repair endonucleases UvrC, Cho, and similar proteins;
Region: GIY-YIG_UvrC_Cho; cd10434"
/db_xref="CDD:198381"
misc_feature complement(order(450519..450527,450558..450566))
/gene="uvrC"
/locus_tag="RCA_01920"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198381"
misc_feature complement(order(450345..450347,450381..450383,
450483..450485,450495..450497,450516..450521,
450525..450527,450558..450560))
/gene="uvrC"
/locus_tag="RCA_01920"
/note="active site"
/db_xref="CDD:198381"
misc_feature complement(order(450381..450383,450495..450497,
450525..450527))
/gene="uvrC"
/locus_tag="RCA_01920"
/note="catalytic site [active]"
/db_xref="CDD:198381"
misc_feature complement(order(450381..450383,450495..450497,
450525..450527))
/gene="uvrC"
/locus_tag="RCA_01920"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:198381"
misc_feature complement(450381..450383)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198381"
misc_feature complement(449907..450008)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
misc_feature complement(448926..449480)
/gene="uvrC"
/locus_tag="RCA_01920"
/note="UvrC Helix-hairpin-helix N-terminal; Region:
UvrC_HhH_N; pfam08459"
/db_xref="CDD:203951"
gene complement(450713..451246)
/locus_tag="RCA_01925"
/db_xref="GeneID:11860704"
CDS complement(450713..451246)
/locus_tag="RCA_01925"
/note="COG2847 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="copper(I)-binding protein"
/protein_id="YP_005299442.1"
/db_xref="GI:379022781"
/db_xref="GeneID:11860704"
/translation="MLKTLLISLITLICAVSYAENQTAQNHYSTNASSDESNNLLPAA
LAVHFVQPWARPTTDVQGKVSNSAMYFTLVNSRSSSYNLVNISSDIANKIELHQTITD
ESGISKMVKVDYPFLIADNIKVDFKPGGMHIMLYDLKGPLNVGSSFKITFFFDDNTRK
TVDVKVANDNPYNTAGN"
misc_feature complement(450716..451135)
/locus_tag="RCA_01925"
/note="Copper(I)-binding protein [Inorganic ion transport
and metabolism]; Region: COG2847"
/db_xref="CDD:32675"
gene complement(451951..452481)
/locus_tag="RCA_01930"
/db_xref="GeneID:11860705"
CDS complement(451951..452481)
/locus_tag="RCA_01930"
/note="COG0350 Methylated DNA-protein cysteine
methyltransferase"
/codon_start=1
/transl_table=11
/product="methylated-DNA--protein-cysteine
methyltransferase"
/protein_id="YP_005299443.1"
/db_xref="GI:379022782"
/db_xref="GeneID:11860705"
/translation="MDIKINNVLKSAWLDTPIGSMLTISDEERLYLLDFAESKGLEYK
IKRLKIKTKSAITEDRTKPILSIKEELKSYFTGTLKKFDTPIHLLGSEFQKLVWQELM
NVPYGETRSYFDQAKIIGRERSYRAVANANGANKCAIIIPCHRIINNNGELGCYSSGL
DRKKWLIEHERTFTTN"
misc_feature complement(451969..452457)
/locus_tag="RCA_01930"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:30699"
misc_feature complement(451969..452205)
/locus_tag="RCA_01930"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature complement(order(452017..452019,452038..452040,
452053..452055,452077..452079,452083..452088,
452095..452097,452101..452106,452110..452112,
452119..452121,452143..452148,452200..452205))
/locus_tag="RCA_01930"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature complement(order(451972..451974,452044..452046,
452050..452055,452146..452148))
/locus_tag="RCA_01930"
/note="active site"
/db_xref="CDD:119438"
gene complement(453791..453901)
/locus_tag="RCA_01935"
/db_xref="GeneID:11860706"
CDS complement(453791..453901)
/locus_tag="RCA_01935"
/note="COG0610 Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases"
/codon_start=1
/transl_table=11
/product="Type I site-specific restriction-modification
system, R (restriction) subunit"
/protein_id="YP_005299444.1"
/db_xref="GI:379022783"
/db_xref="GeneID:11860706"
/translation="MRTILPNAYIAFTGTPILKDQKHTFRNLVNQFINIL"
misc_feature complement(<453827..>453901)
/locus_tag="RCA_01935"
/note="type I site-specific deoxyribonuclease, HsdR
family; Region: hsdR; TIGR00348"
/db_xref="CDD:188043"
gene complement(454008..454208)
/locus_tag="RCA_01940"
/db_xref="GeneID:11860707"
CDS complement(454008..454208)
/locus_tag="RCA_01940"
/note="COG0610 Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases"
/codon_start=1
/transl_table=11
/product="Type I site-specific restriction-modification
system, R (restriction) subunit"
/protein_id="YP_005299445.1"
/db_xref="GI:379022784"
/db_xref="GeneID:11860707"
/translation="MVIIAQFLLKSANLANTCIIIITDRIKPDGQIENTFKACGLESK
LATTSAELIKLIRGDVSIITTV"
misc_feature complement(<454011..>454208)
/locus_tag="RCA_01940"
/note="Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms]; Region: COG0610"
/db_xref="CDD:30955"
gene 455735..456184
/locus_tag="RCA_01945"
/db_xref="GeneID:11860708"
CDS 455735..456184
/locus_tag="RCA_01945"
/note="COG2001 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="cell division protein MraZ"
/protein_id="YP_005299446.1"
/db_xref="GI:379022785"
/db_xref="GeneID:11860708"
/translation="MNVFLSKYVNGVDKKSRVSVPANYRAVLGQELFNGVIAYPSIRN
KCIEACGISHIEKLRQMIETLDPYSEERDAFETIIFGEALQLSFDSEGRVMLPQSLMQ
HAGIEEQACFVGKGVIFEIWQPQNFEKYLNSAQKIAYEKRLTLRNAN"
misc_feature 455741..456178
/locus_tag="RCA_01945"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2001"
/db_xref="CDD:32184"
misc_feature 455969..456175
/locus_tag="RCA_01945"
/note="MraZ protein; Region: MraZ; pfam02381"
/db_xref="CDD:111290"
gene 456184..457110
/locus_tag="RCA_01950"
/db_xref="GeneID:11860709"
CDS 456184..457110
/locus_tag="RCA_01950"
/note="COG0275 Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis"
/codon_start=1
/transl_table=11
/product="16S rRNA m(4)C1402 methyltransferase"
/protein_id="YP_005299447.1"
/db_xref="GI:379022786"
/db_xref="GeneID:11860709"
/translation="MQQSHIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCN
CYVTALDRDPNVIKRAEIIKQNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSM
QLDIADRGFSFLHDSPLDMRMSGQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAK
RIVEYRKTARINSTGKLAEIVRNSIGFRKGKIDPATKTFQAIRIYINDELRELERFLA
NVQSILNKDGRLVIVSFHSLEDRIVKHFFKENSEKPVARSKYSKDDPVIDPNKWLKII
TNKAEAPSDKEVELNVRARSAKLRAAKAIYEY"
misc_feature 456184..457056
/locus_tag="RCA_01950"
/note="Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane]; Region:
COG0275"
/db_xref="CDD:30623"
misc_feature 456259..>456507
/locus_tag="RCA_01950"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(456265..456285,456334..456339,456409..456417,
456469..456471)
/locus_tag="RCA_01950"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 457113..457502
/locus_tag="RCA_01955"
/db_xref="GeneID:11860710"
CDS 457113..457502
/locus_tag="RCA_01955"
/note="COG5462 Predicted secreted (periplasmic) protein"
/codon_start=1
/transl_table=11
/product="cell division protein FtsL"
/protein_id="YP_005299448.1"
/db_xref="GI:379022787"
/db_xref="GeneID:11860710"
/translation="MSIRKFHYLTLLITIIAVCSLFSIKERVSTLDYQLNSVIKQINS
ENNNIHILKAEQAYLLSPGRLKKLVAAYLTLETVKSYQMIKDPLLPTTNQNIKLAYNI
SIPKDSKWRYRRITNNKYIQTVSSKVK"
misc_feature 457116..457499
/locus_tag="RCA_01955"
/note="Predicted secreted (periplasmic) protein [Function
unknown]; Region: COG5462"
/db_xref="CDD:35021"
gene 457602..459287
/locus_tag="RCA_01960"
/db_xref="GeneID:11860711"
CDS 457602..459287
/locus_tag="RCA_01960"
/note="COG0768 Cell division protein
FtsI/penicillin-binding protein 2"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_005299449.1"
/db_xref="GI:379022788"
/db_xref="GeneID:11860711"
/translation="MKHILEKWKPAIKSLIIWNVCSKNIKIRLLIVICGFSFLFCALS
YRLIIVATNVYDKNLNAVKKNNQFRKEIVDRNGNLLAVNLPSASLFANPQIVLDPETS
VKKLAEILPDINKAKLLAELKSNKSFIWVKRDLLPSQQEKITSLGLLGFDFEEEQKRI
YIFSNLLSHVIGYVGRDLVGLSGLELAYDKYLTNSDHALNEPGNWKEPLKLSIDIRLQ
SILSEEIDKTLKQFNAIGAVGIIADPNNGEILALVNKPDFDPHYPNLARPEELFNIAS
LGLYEMGSVFKALTMAVGFDTGAINMNDAYDISYMKVGGFQLKDYTPRQGWHSVPEIF
LYSSNIGTSQIMLEIGKSNFKKYLKKLGLLDQLQIELPERGTPLFPSEKRWNELTSVT
MSYGYGISISPLHFVRAMLPVVNGGTLYDLTLLKRKDEKVIGRRVFSEHTSTQMKKLF
RSVVKEGNGKRAEVKGYLVGGKTGTAEKLSQGAGGKKKYLKNSRASSFLGVLPVSNPQ
YVIFIRFDEPKPTKESFGFATASWTAAPTAGRVFERMISLYGLEPIEHNEEES"
misc_feature 457656..459266
/locus_tag="RCA_01960"
/note="Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane];
Region: FtsI; COG0768"
/db_xref="CDD:31111"
misc_feature 457806..458177
/locus_tag="RCA_01960"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 458319..459161
/locus_tag="RCA_01960"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 459717..460238
/locus_tag="RCA_01965"
/db_xref="GeneID:11860712"
CDS 459717..460238
/locus_tag="RCA_01965"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299450.1"
/db_xref="GI:379022789"
/db_xref="GeneID:11860712"
/translation="MLKIKQEIYKNSLQIILKLLFALLCLLIILFPLVSYKINIQSRI
FPAIEIIFIYYFMSLYSLNVFRIFLLGLLIDQISGIPIGTNSLVFLLAYVIYKVSSKY
FVTKNYLIHFIIFCIYCLFILNFKYLLVIIKKLEADGYLILFLQFCTTIFSYNLVYLI
LDSPMNYFKKYAK"
gene 460228..462009
/locus_tag="RCA_01970"
/db_xref="GeneID:11860713"
CDS 460228..462009
/locus_tag="RCA_01970"
/note="COG0768 Cell division protein
FtsI/penicillin-binding protein 2"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_005299451.1"
/db_xref="GI:379022790"
/db_xref="GeneID:11860713"
/translation="MLNKKILHGELISRRAFIIGVGKLGFLSLLGIRMFYLQLIKSEE
YKTLSDKNRINFVVLPPSRGRIYDLDGNILATNKPCYQLVIDRSINNNYRDELEIISN
ILNLSPEKFNYIKQKIEKSSRHVPLVIFDQLDWQQVSVIEEQKHKLASIFIDIGYLRF
YPFSSVTSHLIGYLGQINEQEKQELNIYSVSNFNIGKSGIEKYYDNKLRGEFGYKKVE
VNAYGKQVREIAGTPTKSGEDMHLNIDASLQQKIRQYLNPKGSSAIVMDTRTGNVLIC
VSTPGFESNNFSKLSENYWQSLTGDPYKPLINKVIQNSYPPGSVFKIITVLAALEVGI
NPNKTVFCDGSSVLNTNSFRCWNHSGHGTLDMMSALKYSCNIYMYELARIIGPDKILA
VAREFGFGSKTGIDLAHENMGFVPSKEWKKRKLKLPWSIGDSFNLAIGQGFLGVTPMQ
LARFITAIASNGKLYTPRVLKNDPEFYNVNIKPENIKIIQESLYNTVNVVGGTAYYNR
ILGKNRQLAGKTGTSQVQGKLNAKDDLSRDSIAWERRNHALFLGFSPYHDPRYSVTVF
IDHGGGGSKAAAPIARKIMSDVLDKYL"
misc_feature 460267..462006
/locus_tag="RCA_01970"
/note="penicillin-binding protein 2; Region: pbp2_mrdA;
TIGR03423"
/db_xref="CDD:200273"
misc_feature 460402..460914
/locus_tag="RCA_01970"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 461011..461982
/locus_tag="RCA_01970"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 462048..462146
/locus_tag="RCA_01975"
/db_xref="GeneID:11860714"
CDS 462048..462146
/locus_tag="RCA_01975"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299452.1"
/db_xref="GI:379022791"
/db_xref="GeneID:11860714"
/translation="MIEELLKFQYGYNDEKVAAIVERVIDYDLLSV"
gene 462162..462383
/locus_tag="RCA_01980"
/db_xref="GeneID:11860715"
CDS 462162..462383
/locus_tag="RCA_01980"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299453.1"
/db_xref="GI:379022792"
/db_xref="GeneID:11860715"
/translation="MEVIVIENYGAEFTILNVAVKSGSLDIINYLFDKNIFPVSQELL
TIVKRPFIQSLQVIILNLQSFYCTKGVRC"
gene 462492..462671
/locus_tag="RCA_01985"
/db_xref="GeneID:11860716"
CDS 462492..462671
/locus_tag="RCA_01985"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299454.1"
/db_xref="GI:379022793"
/db_xref="GeneID:11860716"
/translation="MPDTDLLDLCNVLKMRSFLLSIKELENLYLYPTGQDRDFINVYK
ILSPEVQEMWDVRVS"
gene 463109..464086
/locus_tag="RCA_01990"
/db_xref="GeneID:11860717"
CDS 463109..464086
/locus_tag="RCA_01990"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299455.1"
/db_xref="GI:379022794"
/db_xref="GeneID:11860717"
/translation="MSKKKQDDQIIKELEARLAKLKGTPPTLEELEERFAKLQDRPYV
PTKKSGNKVDDLIEQIRSEVKLEQKSRNLSNQKDQEICDRLDKLREDIPIMQHKTSTA
LSFNDTKSIITDTIDAQADIASLYASRSTELEEKKALLHLANNLTEASDIIRDKSPIS
KEYETKILDVIASGLNTIYEGIKKIVSPTVNILKEIGSSFVNSIQSLHQKSSKQQIQE
SKIKLKKLYKTYIYLKGVKPKIKEDFLKKHYERIDQLQTPQEIFVETAKITKSIKIAG
KHKINNLKQQQIINRMKEQSPTAFINNNLFVPSNTLTTKVRSLKKSNQR"
gene complement(464437..466188)
/locus_tag="RCA_01995"
/db_xref="GeneID:11860718"
CDS complement(464437..466188)
/locus_tag="RCA_01995"
/note="COG1357 Uncharacterized low-complexity proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299456.1"
/db_xref="GI:379022795"
/db_xref="GeneID:11860718"
/translation="MPILKVISIITIYLLLSSCSESTRDAHGLLTDSQSTVIQHYIVS
QNSKNLKVNLKEKFGSNLKGVKLIGVQLINEDLSGIDLTSCEILRTDFAGSNLEKAIL
TNAIIQESNFADSVIKNISGYNSDFRGSIFNNITLQNTNLVQSNFSDTAFNKTTIKHV
NFENSKFSHVLWNNNTIDGVNFQKANLKNNSFKNTNITNSIFYGTDLAKSVINNTNFT
NNYFESSDLSQTRLTAVIIKDSNFTQSIFNEVSFNNVQSNNSYFSYASFQGSTLQNIS
LTKCDLQNSTISGAVLNQFKIDNSILNNMSLNDNKFNNLSIKNSNANFVRINKTKGSN
ITLDNISIANIIFSNNDFKQFIAINTDLTGSEIINSNITNGQFNNVNFSKTLIQNINF
SDVKINLGNLNQVALINSNLINTAVINSAISNSQINNINYQAYSSFINTNVSNNIILN
SDNSSKNLPNNIIINSVKDLQKITNLANMNLTNFDLSNLIFDRVDFSNSIFKNANLTN
TVIKNSSLQNVDFSATTISKTDFSNSILTDSVFKSAKIDQANFNNSDLTNVDFSDAAI
KNTLFDKAKTGGMKGVE"
misc_feature complement(465613..465846)
/locus_tag="RCA_01995"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(465424..465636)
/locus_tag="RCA_01995"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(465277..465486)
/locus_tag="RCA_01995"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(464650..464769)
/locus_tag="RCA_01995"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(464506..464736)
/locus_tag="RCA_01995"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
gene complement(466175..467602)
/locus_tag="RCA_02000"
/db_xref="GeneID:11860719"
CDS complement(466175..467602)
/locus_tag="RCA_02000"
/note="COG2204 Response regulator containing CheY-like
receiver, AAA-type ATPase, and DNA-binding domains"
/codon_start=1
/transl_table=11
/product="nitrogen assimilation regulatory protein NtrX"
/protein_id="YP_005299457.1"
/db_xref="GI:379022796"
/db_xref="GeneID:11860719"
/translation="MSSIDVLIVDDEEDIRNIIAAILKDEGFNSKVAANSTQALKILA
EKPVSAVILDIWLQGSEIDGLGILEIIKKRYPLMPVIIISGHGTIETAVNAIKMGAYD
YIEKPFNNDKLVILLKRACEITKLKRENIDLKSKVIDKTELVGGCSVTLKYKMEIEKA
ASSSSRIMIHGKVGSGKELAARLIHKQSKRVNNPFIIFSPTCMTTEKIDQELFGESEK
QENNNKRPTILEFANNGTLYIDEVSNIPIPIQVKLLKFLKNQTITKPCGDSIKVDIKI
ITGTSKNIQDEVNNGKFLEELYYRLNVFSLKVPSLYERKEDIPLLIKYFVKQLSKFSG
LKERPFADDTIAALQSYEWPGNIRQLRNVVEWTLIMNPLTTGNNEIIKPYMIPAEILA
NSANLTKLEDSVDMLSMPLREAREVFERQYLSAQMSRFNNNISKTSSFVGMERSALHR
KLKLLSLHIPPANKINEEEYEDANT"
misc_feature complement(466211..467557)
/locus_tag="RCA_02000"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature complement(467243..467557)
/locus_tag="RCA_02000"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(467282..467287,467294..467296,
467351..467353,467411..467413,467441..467443))
/locus_tag="RCA_02000"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(467441..467443)
/locus_tag="RCA_02000"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(467411..467419,467423..467425,
467432..467434))
/locus_tag="RCA_02000"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(467279..467287)
/locus_tag="RCA_02000"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(466697..467104)
/locus_tag="RCA_02000"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(467069..467092)
/locus_tag="RCA_02000"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(466760..466762,466883..466885,
467066..467089))
/locus_tag="RCA_02000"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(466880..466897)
/locus_tag="RCA_02000"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(466703..466705)
/locus_tag="RCA_02000"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(466244..466360)
/locus_tag="RCA_02000"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 467815..468081
/locus_tag="RCA_02005"
/db_xref="GeneID:11860720"
CDS 467815..468081
/locus_tag="RCA_02005"
/note="COG2212 Multisubunit Na+/H+ antiporter, MnhF
subunit"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
F"
/protein_id="YP_005299458.1"
/db_xref="GI:379022797"
/db_xref="GeneID:11860720"
/translation="MLNIFLIIISLFICLITYLFIKKTDIFTKLLVLNSFTTIVSLFI
CCLSLYSGNSSYLDIAIIYFLLSFIATNGYLKYFINESNENKTD"
misc_feature <467863..468063
/locus_tag="RCA_02005"
/note="putative monovalent cation/H+ antiporter subunit F;
Reviewed; Region: PRK12612"
/db_xref="CDD:183623"
gene 468062..469351
/locus_tag="RCA_02010"
/db_xref="GeneID:11860721"
CDS 468062..469351
/locus_tag="RCA_02010"
/note="COG0654 2-polyprenyl-6-methoxyphenol hydroxylase
and related FAD-dependent oxidoreductases"
/codon_start=1
/transl_table=11
/product="2-octaprenyl-6-methoxyphenyl hydroxylase"
/protein_id="YP_005299459.1"
/db_xref="GI:379022798"
/db_xref="GeneID:11860721"
/translation="MKTKQINRYLSKFAYREDCVGDTKRSTAAYINVCEDARSVRSTH
KLPLQVELGKMTNIVILGCGLSGMLTALSFAKKGIETTIFESKSVKSPEFFKDIRTTA
LTPHAKNFLSSIDIWEELEECTVGMQDVYVVDNKASEILDLRNDNNNLLGYVVKNSDF
KKILLSKITNHPLVTLIDNYKYQEVISHHNYSVIKFDNEQIKCNLLIICDGANSKARS
HYFANKIEKPYQTALTFNIKHEKPHENSAMEHFLPLGPFALLPLKDQYASSVIWSTSS
DQAALIMNLPVEEVRFLTQRNAGNALGKITIDSEMSSFPLKARMANRYFHNKIVLIAD
TAHIIHPLAGQGLNQGIKDIETLSMVISNNNGSLERYQKLRQDDNFIMYKLTDELNNI
FSHYSKNLRFIRQIGFKAINNFKPIKNLIMNYAMGER"
misc_feature 468083..468223
/locus_tag="RCA_02010"
/note="Rickettsial palindromic element RPE1 domain;
Region: RPE1; TIGR01045"
/db_xref="CDD:162172"
misc_feature 468224..469348
/locus_tag="RCA_02010"
/note="2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated; Region: PRK06617"
/db_xref="CDD:168629"
misc_feature 468233..469342
/locus_tag="RCA_02010"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 469564..469791
/locus_tag="RCA_02015"
/db_xref="GeneID:11860722"
CDS 469564..469791
/locus_tag="RCA_02015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299460.1"
/db_xref="GI:379022799"
/db_xref="GeneID:11860722"
/translation="MLKKVMLLCLNINENSNISQPQTQQSGQKKNRVLTETKAMCGLR
AVTAAASAVLVSAKILLVLQQKSVLILILSV"
gene 471823..473154
/locus_tag="RCA_02030"
/db_xref="GeneID:11860723"
CDS 471823..473154
/locus_tag="RCA_02030"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter"
/protein_id="YP_005299461.1"
/db_xref="GI:379022800"
/db_xref="GeneID:11860723"
/translation="MLGYEKAQTSLNREQKETIRLLSIGTFLEYFDLMIYVHMAVLLN
ELLFPKADTQTAAIYSAAAFCSTFVFRPFVALLFGWIGDKYGRKSTVIITTLFMACFC
AVMAGLPTYVQIGVMATWIVTICRIIQGMSSLCEIIGAELYLTETINPPKQYPVVSLM
SSCAVLGGVAALGLESIIVHYGFSWRITFFIGTFIAITGSYARTHLRETRDFIDAKQQ
VKNIFNKASINIKILENNPIWKEKVHWKTSLYYFLIHCTWPVTFYITYIYCSNILKSS
FNYTSEEIITHNFIVSLMQFFGSLIFRAYLSGIINPLKILKGFLAIFSLFILIFPYLL
NNLHTPRELLIIQSIMVIIGLGDAPAVPIFFKHFPIFKRFTYSSFLYALSRALIYVVT
SFGIIYLVSYFGHWGILVISIPLSISYGFGILHFEKLEKNRENYLKKKQLA"
misc_feature 471877..>472380
/locus_tag="RCA_02030"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 471895..473040
/locus_tag="RCA_02030"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature order(471919..471921,471928..471930,471940..471945,
471949..471954,472003..472005,472012..472014,
472024..472026,472033..472035,472045..472050,
472054..472059,472219..472224,472231..472236,
472243..472248,472255..472257,472291..472296,
472303..472308,472324..472326)
/locus_tag="RCA_02030"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(473151..473789)
/locus_tag="RCA_02035"
/db_xref="GeneID:11860724"
CDS complement(473151..473789)
/locus_tag="RCA_02035"
/note="COG0317 Guanosine polyphosphate
pyrophosphohydrolases/synthetases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299462.1"
/db_xref="GI:379022801"
/db_xref="GeneID:11860724"
/translation="MEDISSWQEKFEVCVYAKKLLDKLKYLNAKVKNPVDIEEVKKGI
YYARKYHGSQMRQSGEPYYSHPVEVAIMLAEFVTDEAPKLFTTNMINAALLHDTIEDT
ELTEEMITEIFEIEVARHVEGLTRIKSYGKISVEESLNLLVKQKRYDTALIKFFDRIH
NVQTLGVKSPEKIRKIIEETLKVFLILSMYLGISQVKNKLIELCLNIAYSDS"
misc_feature complement(<473157..473708)
/locus_tag="RCA_02035"
/note="Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription]; Region: SpoT; COG0317"
/db_xref="CDD:30665"
misc_feature complement(473208..473660)
/locus_tag="RCA_02035"
/note="HD domain; Region: HD_4; pfam13328"
/db_xref="CDD:205508"
gene complement(474437..474513)
/locus_tag="RCA_t05311"
/db_xref="GeneID:11860725"
tRNA complement(474437..474513)
/locus_tag="RCA_t05311"
/product="tRNA-Arg"
/db_xref="GeneID:11860725"
gene complement(475175..475486)
/locus_tag="RCA_02040"
/db_xref="GeneID:11860726"
CDS complement(475175..475486)
/locus_tag="RCA_02040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299463.1"
/db_xref="GI:379022802"
/db_xref="GeneID:11860726"
/translation="MNNIYKNIEIPDKLYEDIVINGNNLLKDQLAENIIGLEIKTFDK
PLITLKTEYDTPYKVITLDKIKLENPANVKIFNEAINNKINEFNNRNFISFTYAIQLN
S"
gene complement(475724..476020)
/locus_tag="RCA_02045"
/db_xref="GeneID:11860727"
CDS complement(475724..476020)
/locus_tag="RCA_02045"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299464.1"
/db_xref="GI:379022803"
/db_xref="GeneID:11860727"
/translation="MSKDNEPANSFTTEKQIKEIISGARNDIRDIEGYVLGQLKNQII
ADKEPIDINSKNFKEIFEADHNETSTIEINEKQEVIKNNIINVPATILAINERI"
gene complement(476357..476530)
/locus_tag="RCA_02050"
/db_xref="GeneID:11860728"
CDS complement(476357..476530)
/locus_tag="RCA_02050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299465.1"
/db_xref="GI:379022804"
/db_xref="GeneID:11860728"
/translation="MPWNVLKCSLYPSIEAANFTYENTAGIVNGVAGISHLVYDNLPS
YSETVDRAGSTDQ"
gene 476760..476939
/locus_tag="RCA_02055"
/db_xref="GeneID:11860729"
CDS 476760..476939
/locus_tag="RCA_02055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299466.1"
/db_xref="GI:379022805"
/db_xref="GeneID:11860729"
/translation="MGDKLDLYEQDIENNFKKQQKFNNQSEITLFQKSAKIYVSKMSI
LNVTNRKTKKEFLKG"
gene 476951..478186
/locus_tag="RCA_02060"
/db_xref="GeneID:11860730"
CDS 476951..478186
/locus_tag="RCA_02060"
/EC_number="6.1.1.1"
/note="COG0162 Tyrosyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_005299467.1"
/db_xref="GI:379022806"
/db_xref="GeneID:11860730"
/translation="MTFIKEFRNKGYFHQCTNLDRLTSITKETKIAAYIGFDCTATSL
HIGSLMQIMILRLLQQHGHKPIVIIGGGTSKIGDPTWKDEARKILSKEEIAKNAEGIK
KSLSKFIKFGEESSDAIMLDNSEWLDSLNYLDFLRDFGSYFSVNRMLTMDSVRLRLER
EQHLSFLEFNYMLLQAYDFYYLSKYYNCSLQLGGSDQWGNIIIGVDLIRKISSKEVFG
MTTPLLTTSSGAKMGKTAAGAVWLNEDLLSPYDYYQYWRNCEDADVIRFAKLFSELNT
KEFTKFENLVAEDINAAKKQLAYELTKLCHSEQAAKSALETAVKIFEQGEIDENLHTV
VLELEILQAGINAYELFHEAGLATSKSEARKLIRGKGAKINDKLIEDENMIINTNFLL
DKSVIKLSAGKKRHILVRI"
misc_feature 476951..478183
/locus_tag="RCA_02060"
/note="tyrosyl-tRNA synthetase; Validated; Region:
PRK05912"
/db_xref="CDD:180311"
misc_feature 477041..477862
/locus_tag="RCA_02060"
/note="catalytic core domain of tyrosinyl-tRNA synthetase;
Region: TyrRS_core; cd00805"
/db_xref="CDD:173902"
misc_feature order(477050..477052,477056..477064,477083..477085,
477089..477094,477461..477463,477473..477475,
477482..477484,477521..477523,477527..477532,
477539..477541,477617..477622,477641..477652)
/locus_tag="RCA_02060"
/note="active site"
/db_xref="CDD:173902"
misc_feature 477083..477094
/locus_tag="RCA_02060"
/note="HIGH motif; other site"
/db_xref="CDD:173902"
misc_feature order(477164..477166,477173..477178,477344..477349,
477353..477361,477368..477373,477377..477388,
477392..477397,477449..477451,477455..477460,
477467..477472)
/locus_tag="RCA_02060"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173902"
misc_feature 477641..477655
/locus_tag="RCA_02060"
/note="KMSKS motif; other site"
/db_xref="CDD:173902"
misc_feature 477998..478177
/locus_tag="RCA_02060"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(478022..478027,478031..478036,478040..478045,
478052..478057,478061..478063,478082..478105,
478109..478111)
/locus_tag="RCA_02060"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 479292..480146
/locus_tag="RCA_02065"
/db_xref="GeneID:11860731"
CDS 479292..480146
/locus_tag="RCA_02065"
/note="COG1189 Predicted rRNA methylase"
/codon_start=1
/transl_table=11
/product="tyrosyl-tRNA synthetase"
/protein_id="YP_005299468.1"
/db_xref="GI:379022807"
/db_xref="GeneID:11860731"
/translation="MYNAEQNGSIFKYTNLILLGQINQINIKMIKAMKIRLDEYLLQK
GFVTDITIAQSLIIQGKVHNKYEQLIKPGIQVNINDTNIKVKLPKHNYVSRGALKLIA
ALDYFKITTENLVCIDIGSSTGGFTQVLLERKAKLIFAVDVGYGELHPKLRNNLQIKV
LEKTNARYLTDKQITMKPDLIVCDASFISLTTILPTSLNLAKEDCMLIALIKPQFEVK
KHEVEKGGIIKNSILHRKVCNKIKDWLVKEHNFKIFGIIDSPILGAKGNKEFLICGKR
KWLFSYNL"
misc_feature 479388..480122
/locus_tag="RCA_02065"
/note="Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis]; Region: COG1189"
/db_xref="CDD:31382"
misc_feature 479394..479567
/locus_tag="RCA_02065"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(479397..479399,479433..479438,479442..479447,
479451..479456,479463..479468,479472..479474,
479493..479516,479520..479522)
/locus_tag="RCA_02065"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 479640..>479861
/locus_tag="RCA_02065"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(479646..479666,479715..479717,479781..479789,
479841..479843)
/locus_tag="RCA_02065"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 480537..480743
/locus_tag="RCA_02070"
/db_xref="GeneID:11860732"
CDS 480537..480743
/locus_tag="RCA_02070"
/note="COG0779 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="ribosome maturation protein RimP"
/protein_id="YP_005299469.1"
/db_xref="GI:379022808"
/db_xref="GeneID:11860732"
/translation="MIDSLNSEKVSVEDCTKVSRTIPAILDVENLIEDASSLEVASSG
LERPLVKFENYNRFLENHTERIIE"
misc_feature <480564..>480713
/locus_tag="RCA_02070"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
gene 480912..482423
/gene="nusA"
/locus_tag="RCA_02075"
/db_xref="GeneID:11860733"
CDS 480912..482423
/gene="nusA"
/locus_tag="RCA_02075"
/note="COG0195 Transcription elongation factor"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_005299470.1"
/db_xref="GI:379022809"
/db_xref="GeneID:11860733"
/translation="MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYG
NEYNIKAQINRKTGEINLLRILKIVENVEDYLTQISFEEALIKNPEAKIGDEIYEYLP
PIDHARVSAQAAKQVITQRVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSR
AEAIIKKDQLIKGENFKPNDRIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPE
IFEDIIQIKSVARDPGSKAKIAVFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDI
VLWSNDLAQFIVNALAPLAAAAITKILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLA
SKLTGWNIDIMTEEQESKRRNEEFLTSTGLFMEALDVEEVIGQLLSVTGFNSVEQIAN
SEISTLTRIEGFEEELAVEIKNRAINYVNLKNEKIIKKLEELGVEQEVIDILELPLEL
ILKFAEYGIKTIEDLGEMSVNEFKNLAPSANITDENIKLLIKTARQHSELKSN"
misc_feature 480927..482354
/gene="nusA"
/locus_tag="RCA_02075"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature 480933..481298
/gene="nusA"
/locus_tag="RCA_02075"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature 481317..481517
/gene="nusA"
/locus_tag="RCA_02075"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature order(481350..481352,481374..481376,481401..481403,
481407..481409)
/gene="nusA"
/locus_tag="RCA_02075"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature order(481356..481358,481368..481370,481395..481397,
481401..481403,481500..481502)
/gene="nusA"
/locus_tag="RCA_02075"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature 481608..481778
/gene="nusA"
/locus_tag="RCA_02075"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 481758..481946
/gene="nusA"
/locus_tag="RCA_02075"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature 481884..481895
/gene="nusA"
/locus_tag="RCA_02075"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature 482022..482171
/gene="nusA"
/locus_tag="RCA_02075"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene 482637..485147
/gene="infB"
/locus_tag="RCA_02080"
/db_xref="GeneID:11860734"
CDS 482637..485147
/gene="infB"
/locus_tag="RCA_02080"
/note="COG0532 Translation initiation factor 2 (IF-2;
GTPase)"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_005299471.1"
/db_xref="GI:379022810"
/db_xref="GeneID:11860734"
/translation="MTDNQEIKPKKLTLGNSKLSLNKSFDSLTGAQSFVNAKSKTLVE
VRKSSIGSTTTISLNKERNNLDQTVIDANKEEFNRRLSILKKAAEQSKLNEPSQISTL
SKLASINQSTNLKIETLETLETDKEVAQKRQNITENKVEVSAKIVQGDEDILSQIYKK
KAETFVKSPLVGMRTRYSIESEKESDKTAESKVVVQKIKLEEPKKFKKVDLFNMLSDD
ESGSGRTRTRSLASIKRAREKEKRKLVLQAPEKVYREVTIPEVIGVGDLANAMSERVA
DVIKELMNLGILANASQVIDADTAELVATNLGHKVKRVQESDVENVLISDDKVEDLRT
RAPVVTVMGHVDHGKTSLLDALKSTDIAAGEIGGITQHIGAYRVTLADGRAITFIDTP
GHEAFSEMRSRGTKVTDIAIIVVAADDGIKTQTVEAINHAKVAGVPIIIAINKIDKPN
IDIERVKNELYIHEIIGEEAGGDVMVIPISALKKINLDKLEEAILLIAEMQDLKASPF
GSAAGVVIESKIEKGRGTLTTILVQRGTLKNGDIIIAGTSYGKVKKMTNDKGLEIVEA
TPSVPVEIQGLNEVPFAGVKFNVVQNEKQAKDIAEYRMRLAKEKKISIAPRSSLEDLF
LKASGNSKIKELPLIIKGDVHGSVEAILGSLLKLPSDEIKLRILHSGVGPITESDISL
AHASSAIIVGFNVRAGVNALTAAEKAKIDIRYYSIIYNLIDDVKAIMSGMLDPIVREQ
YIGSVEIRRVFNVTKVGKIAGSYVTKGIIKKGADVRLLRDNIVIHEGKLKTLKRFKDE
VKEVREGYECGIAFENYEDIRENDVVEVFELIQEQRQL"
misc_feature 483396..485144
/gene="infB"
/locus_tag="RCA_02080"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature 483411..483566
/gene="infB"
/locus_tag="RCA_02080"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 483645..484136
/gene="infB"
/locus_tag="RCA_02080"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 483663..483686
/gene="infB"
/locus_tag="RCA_02080"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(483666..483668,483672..483674,483684..483689,
483696..483698,483705..483710,483756..483761,
483816..483821,483888..483893,483996..483998,
484008..484010)
/gene="infB"
/locus_tag="RCA_02080"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(483669..483689,483819..483821,483966..483971,
483975..483980,484074..484082)
/gene="infB"
/locus_tag="RCA_02080"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 483738..483758
/gene="infB"
/locus_tag="RCA_02080"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 483744..483746
/gene="infB"
/locus_tag="RCA_02080"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 483804..483815
/gene="infB"
/locus_tag="RCA_02080"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 483810..483866
/gene="infB"
/locus_tag="RCA_02080"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 483966..483977
/gene="infB"
/locus_tag="RCA_02080"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 484074..484082
/gene="infB"
/locus_tag="RCA_02080"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 484167..484451
/gene="infB"
/locus_tag="RCA_02080"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 484491..484817
/gene="infB"
/locus_tag="RCA_02080"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 484863..485114
/gene="infB"
/locus_tag="RCA_02080"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 485455..487329
/locus_tag="RCA_02085"
/db_xref="GeneID:11860735"
CDS 485455..487329
/locus_tag="RCA_02085"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299472.1"
/db_xref="GI:379022811"
/db_xref="GeneID:11860735"
/translation="MGIMSIFNKLQNLITPNIASKPASYLANSEFDFIIFPKKTTDKE
QNAENTEFLVVLDNAIKQYDKESVRCNNKKIIEAQAKYPFLSSKIDSQEAVKIVYDFG
VNSFSEVKKTVDTKYKTIKESIKPTVNKVYDFGVNSFSEVKKTVDTKYKTIKESIKPT
VNKVYDFGVNSFSEVKKTVDTKYKTIKESIKPTVNKVYDFGVNSFSEVKKTVDTKYKT
IKESIKPTVNKVYDFGVNSFSEVKKTVDTKYKTIKESIKPTVNKVYDFGVNSFSEVKK
TVDTKYKTIKESIKPTVDKVYDFGVNSFSEVKKTVDTKYKTIKESIKPTVDKVYDFGV
NSFSEVKKTVDTKYKTIKESIKPTVNKVYDFGVNSFSEVKKTVDTKYKTIKESIKPTV
DKVYDFWFKFNLSFQKVSNNDQVEEILNTPENELDEIFEKMTYEKLAELINNIANEQA
QKLVNYIMPCHFEKLMQFIPLDTLNMYIDTTLSLDELVEQKLKNLSNDDITDEQLENI
IILVGEEKLAEKLDIIPNENLVRIMSNISNNKLATIIYHASDESLVRIIDIINLDNHH
LSESLVGEIITLIHDKTCVKQEVEPYNVNYTMKLSGALSDSNNNYGFSFNLEDEIIEL
"
gene complement(487358..488038)
/locus_tag="RCA_02090"
/db_xref="GeneID:11860736"
CDS complement(487358..488038)
/locus_tag="RCA_02090"
/note="COG1214 Inactive homolog of metal-dependent
proteases, putative molecular chaperone"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_005299473.1"
/db_xref="GI:379022812"
/db_xref="GeneID:11860736"
/translation="MKILAFDTANNTASVAISENENILAYIEELNHSMQAENLMPMIE
DVMKAAKCSYDDLDYLAVTTGPGSFTGIRIGLASAKGILFAKENIKAVAVNNFEYAYF
RAITQVKKYDKIYVFLNAYRSQLYMQVFHKSGKIEEPLLIDFEYAIKLLTNDKGSIVC
CGSGLEFIYNQIMHLPSIITLPRFARVKAWVICRYIASKGRCVIKLNSSIEPLYIRPP
DAKIAKKG"
misc_feature complement(487367..488038)
/locus_tag="RCA_02090"
/note="Inactive homolog of metal-dependent proteases,
putative molecular chaperone [Posttranslational
modification, protein turnover, chaperones]; Region:
COG1214"
/db_xref="CDD:31407"
misc_feature complement(<487745..487948)
/locus_tag="RCA_02090"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene complement(488121..488846)
/gene="recO"
/locus_tag="RCA_02095"
/db_xref="GeneID:11860737"
CDS complement(488121..488846)
/gene="recO"
/locus_tag="RCA_02095"
/note="COG1381 Recombinational DNA repair protein (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_005299474.1"
/db_xref="GI:379022813"
/db_xref="GeneID:11860737"
/translation="MNIKDIGVIVAKKPLKENTFIITVFTKNYGLYSGVVKASSKKSK
FIYQEGNIVDFLWRARLHEHIGIAKCELIKSYTGYFITNKAKLYAFNSIISLIKELLH
EREEHSNFFSFLINYLDNLSKKFFFRDYINFELALLDIAGYKLDLSKCAVSNVKQDLY
YVSPKSGRALSYEVGKPYKDKLLILPKFLLSDNSKITLEEKRQALTLTNYFFNRYLFH
NNRHAEARQAFMEYILHRCHPAT"
misc_feature complement(488139..488846)
/gene="recO"
/locus_tag="RCA_02095"
/note="DNA repair protein RecO; Reviewed; Region: recO;
PRK00085"
/db_xref="CDD:178852"
misc_feature complement(488619..488840)
/gene="recO"
/locus_tag="RCA_02095"
/note="Recombination protein O N terminal; Region: RecO_N;
cl15812"
/db_xref="CDD:210212"
misc_feature complement(488193..488591)
/gene="recO"
/locus_tag="RCA_02095"
/note="Recombination protein O C terminal; Region: RecO_C;
pfam02565"
/db_xref="CDD:202286"
gene complement(489053..489376)
/locus_tag="RCA_02100"
/db_xref="GeneID:11860738"
CDS complement(489053..489376)
/locus_tag="RCA_02100"
/note="COG0191 Fructose/tagatose bisphosphate aldolase"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecO"
/protein_id="YP_005299475.1"
/db_xref="GI:379022814"
/db_xref="GeneID:11860738"
/translation="MIIVYEIRNLEEARDFLSSVEQKLILTNHVSSVKYYGMLAIDYM
FKTLSKEFPEKVLDLTVDVRDDHAALFTAIKLGYKNIIYTGNSNEARALLRRLEKHQL
SHIVA"
gene complement(489373..490713)
/locus_tag="RCA_02105"
/db_xref="GeneID:11860739"
CDS complement(489373..490713)
/locus_tag="RCA_02105"
/note="COG1066 Predicted ATP-dependent serine protease"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_005299476.1"
/db_xref="GI:379022815"
/db_xref="GeneID:11860739"
/translation="MTKEKKHYTCSNCGNINPKWSGQCFDCGVWGSIVEERVSSHKTI
IKTGSKQDFDKLSGNVAEQVRIPTPIGEFNRVLGGGLVLGSAILIGGDPGIGKSTLLL
QLAASNFASKVHCLYITGEESLNQIKLRAIRLNLTNYNTKILAATNLEDIITSIEANK
NNIDLVVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQ
LAGPKILEHLVDTVLYFEGEHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPS
ELFLMKREQNVIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRHSAVGWDANRLSMIL
AVLISKIGLNFANYEVYLSIAGGLKITDPASDLAVAASLISAATGKPVPEQSIFFGEI
SLSGEIRKTAKAEMRVKEAVKLGFNKIICSKLENLTYNFISSVSHLKDLKEIIK"
misc_feature complement(489379..490713)
/locus_tag="RCA_02105"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:183326"
misc_feature complement(489586..490692)
/locus_tag="RCA_02105"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature complement(490420..490443)
/locus_tag="RCA_02105"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature complement(order(490204..490209,490357..490359,
490363..490365,490420..490428,490438..490440))
/locus_tag="RCA_02105"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature complement(490207..490218)
/locus_tag="RCA_02105"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature complement(489445..>489618)
/locus_tag="RCA_02105"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene complement(490852..491424)
/locus_tag="RCA_02110"
/db_xref="GeneID:11860740"
CDS complement(490852..491424)
/locus_tag="RCA_02110"
/note="COG0742 N6-adenine-specific methylase"
/codon_start=1
/transl_table=11
/product="N6-adenine-specific methylase"
/protein_id="YP_005299477.1"
/db_xref="GI:379022816"
/db_xref="GeneID:11860740"
/translation="MLKIISGKYRNQIIHTAKNIKYRPSTGKIKEAIFSILTSGEFTN
NKLFNDNTHILDLFAGSGNFAFESLSRGAGLATLIDIDPSSLKIAEGFAKSLNIENKI
NFVNLNSLNLPKANKAFDLVFIDPPYHKDIVPKVMKLLVKNNWLKDGSIIVIEMAKLD
DYFLDENIEIIRKKLYSKSKLLILRYALAK"
misc_feature complement(490960..491265)
/locus_tag="RCA_02110"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(491050..491052,491098..491106,
491182..491187,491236..491256))
/locus_tag="RCA_02110"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(491433..494303)
/locus_tag="RCA_02115"
/db_xref="GeneID:11860741"
CDS complement(491433..494303)
/locus_tag="RCA_02115"
/note="COG1357 Uncharacterized low-complexity proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299478.1"
/db_xref="GI:379022817"
/db_xref="GeneID:11860741"
/translation="MTNLNIYKCEEKDLNDYLDYIKDNPNVSLNDFIKKTYFSNDKDK
IVIASLADQEINDKDLMNANFQGTILIDTVFNNCDFTNTILCDSDLTNVKFNDCKFIG
TDFRGANLHYTDFNYKDYDYDNYKIPNLKDKIRDIKLSFSDLERLNKYIDKDLEKERI
KEIVIDEVTNRKKYILAGEDEKTLWEVKSKELKTKQEELEDLKQNLDNPGIVTNFLNA
FWNSAETIAQNQQNKLAKINLLQQQVNKLETEVHVLDNLRMFCGKGLDSILEQLKDEK
IQITLDPSYIIGSTAKERDISKKYIKLTSQEFDLYLAEAAKQSDTKLSLTAFVRKHKK
LSEDIHIIPDLSEIDLSGKTLTNLNLKNTLFAAANLENIKILNCNLDFTNFEGANLQN
AVFQNVTARNAGFLFADLKNSKIKNSDMSRSYMPKIDLSEAEVTNSKFNAVMMVNADA
EKLVIKDSEWKNSNLTGISLAYADMQRVQMQGVVLNNALLDQANIISTNLENAFMHNA
HALEAKFKKQCNMKSITARNAYFSDAEFENILSLEEADLRNAIMERVNLVNANMNKAL
LDKANLEYANLTGAILTDASAQFAKLSNATLEKAEAEGLNIADAIAKNMNAKEANFKN
AIMKRADLTKANLEKAILENADMQAAEALDAIFKEANLKQANLKAANLARINKAGADF
DQAKVDDATKMHYTKGEAKGHLEHHDKNDKITSVNVNNEHDKLQDKIHAREKSGWFLK
TEVGQLCTKLAKSTTSGMSSITNFLASKKFLVGVAIVAGLALAAAPFVAMPMLLVTGT
ALTTKAIILGASILAGVAVAAGTYKFIQKPLRNIQKSFQNLTSRIDKYISPPPENIDE
LVTEKQQARQKAEAEKSKAREENVNNVNNNIDKAKEQDILKHVQNVTPKVEIKEKKDK
TVEKQQTKSSTFAAKVQPNTKNKGFAATIKDEQKNQGHKRNI"
misc_feature complement(<493965..494129)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(494013..494129)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(492969..493193)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature complement(493053..493172)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(492339..493001)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats containing protein [Function
unknown]; Region: COG1357"
/db_xref="CDD:31548"
misc_feature complement(492552..492680)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature complement(492360..492464)
/locus_tag="RCA_02115"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(494353..495042)
/locus_tag="RCA_02120"
/db_xref="GeneID:11860742"
CDS complement(494353..495042)
/locus_tag="RCA_02120"
/note="COG1187 16S rRNA uridine-516 pseudouridylate
synthase and related pseudouridylate synthases"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase"
/protein_id="YP_005299479.1"
/db_xref="GI:379022818"
/db_xref="GeneID:11860742"
/translation="MQRLAKVISNSGVCSRRDAEKLIAEGQVKVDGITILAPATNVDI
SNQIEVSGILINQSQKPRLWIYYKPVGLITTHKDPLSRKTVFEDLTSLPRVISIGRLD
LNSEGLLLLTNSGDLARQFELPSNKLKRVYHVRAYGNPDFLLKSEYKNLEIDGILYNP
YSIKLLRGNNTNAWFEIVLFEGKNREIRRIFEYFGLKVNKLIRVQYGSFTIGNLKPGD
YKEINNKILEK"
misc_feature complement(494368..495042)
/locus_tag="RCA_02120"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature complement(494860..495039)
/locus_tag="RCA_02120"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature complement(order(494914..494916,494920..494943,
494962..494964,494968..494973,494980..494985,
494989..494994,494998..495003,495034..495036))
/locus_tag="RCA_02120"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature complement(494371..494859)
/locus_tag="RCA_02120"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); Region: PseudoU_synth; cl00130"
/db_xref="CDD:211430"
misc_feature complement(order(494479..494481,494737..494748))
/locus_tag="RCA_02120"
/note="active site"
/db_xref="CDD:211324"
gene 495235..495345
/locus_tag="RCA_02125"
/db_xref="GeneID:11860743"
CDS 495235..495345
/locus_tag="RCA_02125"
/note="COG0814 Amino acid permeases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299480.1"
/db_xref="GI:379022819"
/db_xref="GeneID:11860743"
/translation="MMQKLIGSNLLISGTCIGSGMIALPMVLAKLIRYSL"
misc_feature 495235..>495324
/locus_tag="RCA_02125"
/note="Transmembrane amino acid transporter protein;
Region: Aa_trans; cl15776"
/db_xref="CDD:210176"
gene 495813..495947
/locus_tag="RCA_02130"
/db_xref="GeneID:11860744"
CDS 495813..495947
/locus_tag="RCA_02130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299481.1"
/db_xref="GI:379022820"
/db_xref="GeneID:11860744"
/translation="MIVEYNIKTMKQVGNNEQIFLGKKYAGKQIKILTLNDGTSNKAW
"
gene complement(496066..497550)
/locus_tag="RCA_02135"
/db_xref="GeneID:11860745"
CDS complement(496066..497550)
/locus_tag="RCA_02135"
/note="COG0305 Replicative DNA helicase"
/codon_start=1
/transl_table=11
/product="replicative DNA helicase"
/protein_id="YP_005299482.1"
/db_xref="GI:379022821"
/db_xref="GeneID:11860745"
/translation="MACNKINNDKNIDTKEEADIPIPRVLPSNIQAEQMLLGAILTNN
ELLNYVSEFLRLEHFFEPIHQKIYNAIEAITEKGLIATPITLRSMLTQDELFQKIEGA
EYLAKLITMSMMVINPIDYGKIIYDLAIKRNLINIGEEVVNNAYNSSLEVEAKEQIEH
AEAKLYNLASKGLNEKSFTKIGISISDSLANINRAMKNNDHVIGISTGLIDLDNKLFG
FHNSDLIILAGRPSMGKTAFAINLALNACNNMRLKNIRDNQEIQSVGFFSLEMSSEQL
TTRLLSMCAEIDSTSLRTGVLGEEKYNRLRKEANTLSELQFFIDDTPALSITTIRTRA
RRMKRQHNLGILFIDYLQLIRGVSKAENRVSEIAEITQGLKAIAKELNIPVIALSQLS
RAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPAAGDAKHAEWLNKL
NKVYNIADIIVAKHRNGPIGNVSLYYDSQYSKFSNLEQRTFNAV"
misc_feature complement(496072..497505)
/locus_tag="RCA_02135"
/note="replicative DNA helicase; Provisional; Region:
PRK09165"
/db_xref="CDD:181676"
misc_feature complement(497170..497478)
/locus_tag="RCA_02135"
/note="DnaB-like helicase N terminal domain; Region: DnaB;
pfam00772"
/db_xref="CDD:201435"
misc_feature complement(496120..496920)
/locus_tag="RCA_02135"
/note="DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA and
denatures the duplex is unknown, a...; Region: DnaB_C;
cd00984"
/db_xref="CDD:29985"
misc_feature complement(496843..496863)
/locus_tag="RCA_02135"
/note="Walker A motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(496123..496125,496156..496158,
496273..496275,496381..496383,496504..496506,
496843..496848))
/locus_tag="RCA_02135"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29985"
misc_feature complement(496504..496515)
/locus_tag="RCA_02135"
/note="Walker B motif; other site"
/db_xref="CDD:29985"
misc_feature complement(order(496183..496188,496273..496278,
496360..496386,496459..496467,496486..496491))
/locus_tag="RCA_02135"
/note="DNA binding loops [nucleotide binding]"
/db_xref="CDD:29985"
gene complement(498091..498660)
/locus_tag="RCA_02140"
/db_xref="GeneID:11860746"
CDS complement(498091..498660)
/locus_tag="RCA_02140"
/note="COG0163 3-polyprenyl-4-hydroxybenzoate
decarboxylase"
/codon_start=1
/transl_table=11
/product="aromatic acid decarboxylase"
/protein_id="YP_005299483.1"
/db_xref="GI:379022822"
/db_xref="GeneID:11860746"
/translation="MNKEKKIIIAISGASGAIYGIRLLEILKQQNIETHLVISDGAAL
TIKAETTYSIEAIKNLANYYYDDKDLGATISSGSFKTSGIIIAPCSMKTLASIAHSIE
DTLISRAAGVVLKDRRKLILMTRETPLHIGHLENMLKVASYGGIIAPPVPAFYNNPAS
IDDIVNHSVTRILDCFDIETNLIKRWGSV"
misc_feature complement(498103..498597)
/locus_tag="RCA_02140"
/note="polyprenyl P-hydroxybenzoate and phenylacrylic acid
decarboxylases; Region: ubiX_pad; TIGR00421"
/db_xref="CDD:129515"
misc_feature complement(498262..498597)
/locus_tag="RCA_02140"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
gene 498721..500667
/locus_tag="RCA_02145"
/db_xref="GeneID:11860747"
CDS 498721..500667
/locus_tag="RCA_02145"
/note="COG1198 Primosomal protein N' (replication factor
Y) - superfamily II helicase"
/codon_start=1
/transl_table=11
/product="primosome assembly protein PriA"
/protein_id="YP_005299484.1"
/db_xref="GI:379022823"
/db_xref="GeneID:11860747"
/translation="MQIAKILLPIAKLFPLDYLIPKDLSVNIGDLVIVSFRNKELTGI
VWELVSDSEIQKLKTIHRKVSLNLNITPEVLELIKWMSVYYMSELGSIAKLVLPIDIA
AKPIKIKEQKVNNDFILPDLSEEQKQAVTVLNESNKPVIIKGVTGSGKTEIYFHLIAD
YLVKGKQVLIMLPEIALSTQIINRFIERFGFEPIIWNSSVTKAQKQMILRGILIDKVK
VVIGARSSLFLPFKNLGLIVIDEEHDESYKQDDGILYNARDTAIVRGTFDKAQIVLCS
ATPSIETMYNVDLGKYRLINLINRYKNAHLPNIEVIDMTKEKLPKNCYLSKILIEAIK
ANLANKKQTLLFLNRRGYAPLMLCKACGYRLTCKYCSSWMVVHKANKKLECHHCGYQS
KIFSVCPECLEDATLTICGPGIERIEEEAKALFPERKIAVISKDHAKNTEKIAQILHQ
IENLEIDILIGTQMITKGYHFPNLTLVGVIDADLGSNNADLRASERTFQLLHQVGGRA
GRGDSKGLVYLQSYCPNNIIFSYVKVSYEDSFFAHELEIRKSAYMPPFSKMASVILSG
ASEHKILAIAKNMVRIAPKANVKILGPASSLMSKLAGKYRYRILIIADKKFNLQKYLK
FWLSLIKIPSFCQVKIDIDPKSFY"
misc_feature 498721..500661
/locus_tag="RCA_02145"
/note="primosome assembly protein PriA; Validated; Region:
PRK05580"
/db_xref="CDD:180144"
misc_feature 499138..499557
/locus_tag="RCA_02145"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 499159..499173
/locus_tag="RCA_02145"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 499438..499449
/locus_tag="RCA_02145"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature order(499954..499965,500026..500031,500104..500112)
/locus_tag="RCA_02145"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature 499975..500250
/locus_tag="RCA_02145"
/note="helicase superfamily c-terminal domain; Region:
HELICc; smart00490"
/db_xref="CDD:197757"
misc_feature order(500128..500130,500227..500229,500239..500241,
500248..500250)
/locus_tag="RCA_02145"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(500587..500838)
/locus_tag="RCA_02150"
/db_xref="GeneID:11860748"
CDS complement(500587..500838)
/locus_tag="RCA_02150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299485.1"
/db_xref="GI:379022824"
/db_xref="GeneID:11860748"
/translation="MKDSFYKDAIKNSTQNTKQAIAKIQKSLTNPSAHSSNVPPSNKH
KGENIEARFCAQNLIKTLRINIYFYLTKRGNFYKAEPKF"
gene complement(501143..501301)
/locus_tag="RCA_02155"
/db_xref="GeneID:11860749"
CDS complement(501143..501301)
/locus_tag="RCA_02155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299486.1"
/db_xref="GI:379022825"
/db_xref="GeneID:11860749"
/translation="MAQENIKPVVPTKPTSEQIKAWDEAYKKYTNLTASPRALKYSFD
TPSLQVKA"
gene 501457..502449
/locus_tag="RCA_02160"
/db_xref="GeneID:11860750"
CDS 501457..502449
/locus_tag="RCA_02160"
/EC_number="4.2.1.24"
/note="COG0113 Delta-aminolevulinic acid dehydratase"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_005299487.1"
/db_xref="GI:379022826"
/db_xref="GeneID:11860750"
/translation="MYPLVRLRRNRKAFWLRELIAESNLSINDLVLPLFVVDGHNERQ
EIKTMPGIYRLPINQIVETAKRAAELGINAIALFPSIDQSLKSENANEAYNLDNLICR
TIRSIKNANVDIGIICDVALDPYTTHGHDGIVYHGEVDNDKSVRALGNQALVLAKAGV
DIVAPSDMMDGRIGAIRKYLDKEGFINVGILAYAAKYASSFYGPFRDAIRSNKRNYLD
KSSYQMDVRNIKEAMLEIEHDISEGADMVMVKPGMPFLDVIREAANNFNAKIFAYQVS
GEYAMLKFAAEAGAIDWESTIIESLTSFKRAGATAILTYAALEVAEILKNNKIK"
misc_feature 501472..502431
/locus_tag="RCA_02160"
/note="Porphobilinogen synthase (PBGS), which is also
called delta-aminolevulinic acid dehydratase (ALAD),
catalyzes the condensation of two 5-aminolevulinic acid
(ALA) molecules to form the pyrrole porphobilinogen (PBG),
which is the second step in the...; Region:
ALAD_PBGS_aspartate_rich; cd04823"
/db_xref="CDD:88599"
misc_feature order(501472..501480,501487..501492,501517..501525,
501595..501597,501604..501606,501877..501882,
501961..501966,502051..502059,502117..502122,
502129..502140,502147..502149,502156..502161,
502213..502227,502297..502299,502342..502344,
502351..502353,502363..502365,502372..502374)
/locus_tag="RCA_02160"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88599"
misc_feature order(501472..501474,501964..501966,502159..502161,
502171..502173)
/locus_tag="RCA_02160"
/note="allosteric magnesium binding site [ion binding];
other site"
/db_xref="CDD:88599"
misc_feature order(501811..501813,501817..501819,501823..501825,
501847..501849,501952..501954,502042..502044,
502060..502062,502069..502074,502087..502089,
502111..502113,502123..502125,502204..502206,
502273..502275,502282..502284,502399..502401)
/locus_tag="RCA_02160"
/note="active site"
/db_xref="CDD:88599"
misc_feature order(501823..501825,501847..501849,501955..501957)
/locus_tag="RCA_02160"
/note="aspartate-rich active site metal binding site;
other site"
/db_xref="CDD:88599"
misc_feature order(502042..502044,502204..502206)
/locus_tag="RCA_02160"
/note="Schiff base residues; other site"
/db_xref="CDD:88599"
gene 502552..504123
/locus_tag="RCA_02165"
/db_xref="GeneID:11860751"
CDS 502552..504123
/locus_tag="RCA_02165"
/codon_start=1
/transl_table=11
/product="delta-aminolevulinic acid dehydratase"
/protein_id="YP_005299488.1"
/db_xref="GI:379022827"
/db_xref="GeneID:11860751"
/translation="MRQNKKSVFKGWNFLRPKVGGANDVGEHGGVYQSSDGKITAMIK
KETSISKNIAEFLGSQIFETISPGNGAKVNLISPDHFNKSKVFDSQIYVKSEFFENYI
SDMYVDMDKHMSATTKPSSWFRKDGGRPLFMGTRNKLFRTLENAFKEIKYQNFENIMP
ASLLIGDFDIHVGNIGVIRDQKNPKTLPKLVRIDFAGSFNNLTNNIYPNSRAKHLPWF
GPTNHFREFPSSFRKKNPKFADSLLAVSKIDLSKTIDKSFDELTKYYSNEAIAEFAKQ
AIPKKFNNTKSKEITPEEIKTSLIDVMQKRQESLKEYGLEIKINSLISKKYSFPYYEV
KEQELKTLMREYPDYFEKILNYKASKKGGQKIKLRNKVTTNVTRILEILGVRDSAKKH
LIKTIKRLNEDIKYERNLTDSSDKVKIEKEPEPEQKLVKTNVDANREYVDALEKFKKE
VETDYIVSVTPSQLGLTKKAKTKDQDLLKLDEEDLKHIKNLKEKVMKPTKTTLVDVDN
KKPFKSKESKAEIRK"
gene complement(504113..505483)
/locus_tag="RCA_02170"
/db_xref="GeneID:11860752"
CDS complement(504113..505483)
/locus_tag="RCA_02170"
/EC_number="1.6.99.5"
/note="COG1007 NADH:ubiquinone oxidoreductase subunit 2
(chain N)"
/codon_start=1
/transl_table=11
/product="NADH:ubiquinone oxidoreductase subunit N"
/protein_id="YP_005299489.1"
/db_xref="GI:379022828"
/db_xref="GeneID:11860752"
/translation="MLLLLPEITLIIIALLGQFFAVMIPNKNRIISNIIILLCILSIF
LTFHYSSYEGVWHSFATGINIGISQSIVLLFTIISIIIYRGYSILADEKLKCEFITLM
LLSTVGIFVAISSQNFLLLFCGMELTALTSYTLAGFKLNDIKSSEGALKYFILGSLVS
CLSLFGISFIYGFGGSVQFEDILYKLNNSSSTNIGLIIGIVLFLSSIFFKLSSVPLHF
WAPDVYEGSPIASVTYFTAASKIGMVAVLLNISKFIIGDYHPINYNLIKIIAILSMLF
GSFGAIRQTSLKRLMAYSTILNIGYVLIGVLLHNQEGYKTALLYILIYAVGSIGFFTS
LIMLLGKDADKASFKTIQGIAENHKTIAAVISIVMFSMIGIPPLTGFFGKYYLFYQAI
NQGEFALAYCGIFTSIIAAFYYLKVVKAMYFSKKIELMNLPIQYGLLLINYLVVGFLL
LGSFIF"
misc_feature complement(504116..505192)
/locus_tag="RCA_02170"
/note="NADH dehydrogenase subunit 2; Provisional; Region:
ND2; MTH00144"
/db_xref="CDD:177202"
misc_feature complement(504317..505141)
/locus_tag="RCA_02170"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 505861..506040
/locus_tag="RCA_02175"
/db_xref="GeneID:11860753"
CDS 505861..506040
/locus_tag="RCA_02175"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_005299490.1"
/db_xref="GI:379022829"
/db_xref="GeneID:11860753"
/translation="MLNIAEYHMKVLKNKKFPFIYPLVFYNGIQKYNVPLNLWALFEK
SELVQATWINDCQLN"
misc_feature <505861..>506034
/locus_tag="RCA_02175"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:203082"
gene 506414..506743
/locus_tag="RCA_02180"
/db_xref="GeneID:11860754"
CDS 506414..506743
/locus_tag="RCA_02180"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_005299491.1"
/db_xref="GI:379022830"
/db_xref="GeneID:11860754"
/translation="MREIIAVVVEELNVKIENGVISSDHIHIFANIPPHIKVSEFVQK
AKGRSSKKIQEEFPILRKKYWGRHLWVRGYFSATSGNVTDDMINEYINRYTDAHEPAM
TTNIRLE"
misc_feature <506414..506692
/locus_tag="RCA_02180"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene complement(507669..507875)
/locus_tag="RCA_02185"
/db_xref="GeneID:11860755"
CDS complement(507669..507875)
/locus_tag="RCA_02185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299492.1"
/db_xref="GI:379022831"
/db_xref="GeneID:11860755"
/translation="MLNSGINIIITGCNIIGTPLENITNLIEVCIEVLVVSKLAKLYT
NNTIILLSNKNVTNQNNIITGIPK"
gene 508579..508650
/locus_tag="RCA_02190"
/db_xref="GeneID:11860756"
CDS 508579..508650
/locus_tag="RCA_02190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299493.1"
/db_xref="GI:379022832"
/db_xref="GeneID:11860756"
/translation="MKGRYAIMAILEIALSSAAPVHF"
misc_feature 508582..>508641
/locus_tag="RCA_02190"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 508831..508980
/locus_tag="RCA_02195"
/db_xref="GeneID:11860757"
CDS 508831..508980
/locus_tag="RCA_02195"
/note="COG1959 Predicted transcriptional regulator"
/codon_start=1
/transl_table=11
/product="Iron-sulfur cluster assembly transcription
factor IscR"
/protein_id="YP_005299494.1"
/db_xref="GI:379022833"
/db_xref="GeneID:11860757"
/translation="MTTYYKKSVKTCIPNTIKCNSHKLWTGLGKHIRDYFEKISIKDA
LNLNI"
misc_feature <508849..508968
/locus_tag="RCA_02195"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 508977..510083
/locus_tag="RCA_02200"
/db_xref="GeneID:11860758"
CDS 508977..510083
/locus_tag="RCA_02200"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299495.1"
/db_xref="GI:379022834"
/db_xref="GeneID:11860758"
/translation="MIYLDHNATTVIDLRVKEFIISLMDMELNPSSAHSSGRFAKNII
EIARSQIATALGITLSPREYDIAFTSSGTESNNLIMKNFYDGDIFISAIEHLSIYSHI
KYAPNIKIIKVDNQGLVDLKHLEELLSQSSTAKKLVSVMMANNESGVIQDIAEISKIT
KKYEAKFHSDLIQSLGRIPINIKDLGLDFATISGHKIGAGQGSSTLISNSNFQVTPMI
IGGGQEKGIRSGTENVLAIAGLGLAAELITKDISEKYIKIKSLQATLEKKLKEYPKVN
IISENVSRLPNTSLFTVPGTDAQIKLIGFDLRNICVSSGSACSSGKISKSHVLTNMGV
EEEEAKSSIRVSLSHNNTIEDIEAFIKAFEEVYD"
misc_feature 508977..510080
/locus_tag="RCA_02200"
/note="Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and metabolism];
Region: NifS; COG1104"
/db_xref="CDD:31301"
misc_feature 508983..510017
/locus_tag="RCA_02200"
/note="cysteine desulfurase DndA; Region: DNA_S_dndA;
TIGR03235"
/db_xref="CDD:163191"
misc_feature order(509190..509195,509202..509204,509400..509402,
509484..509486,509493..509495,509553..509555,
509562..509564)
/locus_tag="RCA_02200"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 509562..509564
/locus_tag="RCA_02200"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 510193..511425
/locus_tag="RCA_02205"
/db_xref="GeneID:11860759"
CDS 510193..511425
/locus_tag="RCA_02205"
/EC_number="2.8.1.7"
/note="COG1104 Cysteine sulfinate desulfinase/cysteine
desulfurase and related enzymes"
/codon_start=1
/transl_table=11
/product="cysteine desulfurase"
/protein_id="YP_005299496.1"
/db_xref="GI:379022835"
/db_xref="GeneID:11860759"
/translation="MNPQLHNIILPIYMDYQATTPLDPRVMEAMLPYFTTKFGNPHSR
SHSFGWEAENAVEEARSRVAKLIGADAKEIIFTSGATESNNLAIKGIAKFYGNKKNHI
ITVVSEHKCVLDACRHLEQEGIKITYLPINPNGIIDLEILKESITNQTMLVSVMAVNN
EIGVIQPLKEIGKICRERGVFLHSDIAQGFGKIPINVNEFNIDLASISGHKIYGPKGV
GALYVRKKPRIRVTPLINGGGQERGMRSGTLPTPLIVGLGVAAEIAYNEMGKDNKHVS
YLFDRFLNNIKQKISEVYLNGDKDQRYKGNLNLSFAGVEGESIILAIKDLAVSSGSAC
TSASLEPSYVLRSMGIGEELAHTSIRFGIGKFTTEQEIDYAVDLICSKIDKLRELSPL
WEMMQQGIDLKKIKWASH"
misc_feature 510214..511422
/locus_tag="RCA_02205"
/note="cysteine desulfurase; Provisional; Region:
PRK14012"
/db_xref="CDD:184450"
misc_feature 510229..511275
/locus_tag="RCA_02205"
/note="cysteine desulfurase DndA; Region: DNA_S_dndA;
TIGR03235"
/db_xref="CDD:163191"
misc_feature order(510430..510435,510442..510444,510661..510663,
510745..510747,510754..510756,510814..510816,
510823..510825)
/locus_tag="RCA_02205"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 510823..510825
/locus_tag="RCA_02205"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 511513..511914
/locus_tag="RCA_02210"
/db_xref="GeneID:11860760"
CDS 511513..511914
/locus_tag="RCA_02210"
/note="COG0822 NifU homolog involved in Fe-S cluster
formation"
/codon_start=1
/transl_table=11
/product="scaffold protein"
/protein_id="YP_005299497.1"
/db_xref="GI:379022836"
/db_xref="GeneID:11860760"
/translation="MAYSKKVIDHYENPRNVGSLNKESQNVGTGLVGAPACGDVMKLQ
IEVDDNGIITDAKFKTFGCGSAIASSSLVTEWVKGRSINDAETIKNTEIAKELSLPPV
KLHCSLLAEDAIKAAIADYKQKKQAKKTLKT"
misc_feature 511513..511839
/locus_tag="RCA_02210"
/note="NifU homolog involved in Fe-S cluster formation
[Energy production and conversion]; Region: IscU; COG0822"
/db_xref="CDD:31164"
misc_feature 511519..511839
/locus_tag="RCA_02210"
/note="Iron-sulfur cluster scaffold-like proteins; Region:
IscU_like; cd06664"
/db_xref="CDD:143480"
misc_feature order(511519..511527,511534..511539,511621..511626,
511699..511701,511705..511707,511816..511821,
511825..511830)
/locus_tag="RCA_02210"
/note="trimerization site [polypeptide binding]; other
site"
/db_xref="CDD:143480"
misc_feature order(511621..511623,511699..511701,511828..511830)
/locus_tag="RCA_02210"
/note="active site"
/db_xref="CDD:143480"
gene 511911..512243
/locus_tag="RCA_02215"
/db_xref="GeneID:11860761"
CDS 511911..512243
/locus_tag="RCA_02215"
/note="COG0316 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="iron-sulfur cluster assembly accessory protein"
/protein_id="YP_005299498.1"
/db_xref="GI:379022837"
/db_xref="GeneID:11860761"
/translation="MKNVISLTDSAAKQIKLLIAKRDKPTFGIRVGVKSGGCAGQTYY
VEYADSKNQFDEIVEAKGVRILIDPKALMYILGSKMDYVETKFKSQFTFTNPNEKGNC
GCGKSFSV"
misc_feature 511929..512240
/locus_tag="RCA_02215"
/note="Iron-sulfur cluster assembly accessory protein;
Region: TIGR00049"
/db_xref="CDD:161681"
gene 512378..513694
/locus_tag="RCA_02220"
/db_xref="GeneID:11860762"
CDS 512378..513694
/locus_tag="RCA_02220"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="putrescine-ornithine antiporter"
/protein_id="YP_005299499.1"
/db_xref="GI:379022838"
/db_xref="GeneID:11860762"
/translation="MSQKLGFWAVFALVTGSQIGTSVFILPLSLAPFGVYSILGWVLS
LFGAMSIALVFSCLCAKFPKTGGPHVYVWASFGDKIAFFTGWTYWVISFVSTSIVVIS
AIGYLTPFFKSQAVLDLILQIILLSAILVLNLKGPEVAGKVEFYLTLLKFVPLLVVGL
AALSHFNIDNIAIAEEVENLSIPTIMGRVALLTFWGFIGVECATTTAGAVTDPAKTIP
RAIMLGTLCVAALYIINSIGIMGLIPASKLIGSKAPYADAATLLFGGKWSSVIAVIAS
IICIGTLNAWVLTSGQIALGLAEDGLLPKFFAKKNSNNAPTYGIIVSCLGIVPLLVFT
ANDNLAAQITQIIDFSVIAFLFVYLICSLAFLKVILSSKEKCSYYYVLIAIISIIFCS
WVIYTTPVKTIIIATSFTILGIPLYYMWYRSSKQYVAKSSVSPPVT"
misc_feature 512381..513655
/locus_tag="RCA_02220"
/note="arginine:agmatin antiporter; Provisional; Region:
PRK10644"
/db_xref="CDD:182613"
gene 513771..515693
/locus_tag="RCA_02225"
/db_xref="GeneID:11860763"
CDS 513771..515693
/locus_tag="RCA_02225"
/note="COG0006 Xaa-Pro aminopeptidase"
/codon_start=1
/transl_table=11
/product="aminopeptidase P"
/protein_id="YP_005299500.1"
/db_xref="GI:379022839"
/db_xref="GeneID:11860763"
/translation="MIKERITLLRSLFTEYNIDGYIIPSNDKYMNEYVPDYAKRLEYI
TGFTGSNGMVIICKDVALFFTDGRYLEQAKKELDLELFKIFDLKDISTLNKDNSKRFR
QDEFKGDPAECILQRQDLQNSLVSSFLNYVVGYDSELFTYPAISNLKFKFQKINGNLV
DKIWHNQLLEPNSKVYLHDIEFAGSSHLEKIKQCRKTLDSLCRVNDNKQGWHHATVSA
LVILDSSSICWLLNLRSSDVAYTPLMFAKVILTSTKLYLFIAPSRIDADIINARPEIT
ILPEKEFEKILRDSENIFIDANIASVYIMDLISDKKVHKITDPCLIQKACKNEIEIKY
AIDFHIKDAVALCEFFADLFQCHPCESVDPGKDSMDYRLRGNDIGKNGNDSITEYTIG
LKLTEYRAKQEGYVSDSFPTICGFQENSAIIHYRADPKTAKKIIEQGILLIDSGGQYK
GATTDITRTIVIGTPTDEQKKRYTQVLKGHIALARAKFPKNIVVGANLDILARQYLWQ
EMLDYPHSTGHGVGSFLSVHEGPQSINLRNKTVLKAGMILSNEPGFYIPGKYGIRIEN
LMYIKENSGWLEFETLSLVPYASKLIDVKLLNIDEINYIKEYYNKIRDKIYDLLSTQA
RNWLNNEINLFLQSLL"
misc_feature 513783..>514049
/locus_tag="RCA_02225"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 514059..514169
/locus_tag="RCA_02225"
/note="Rickettsial palindromic element RPE3 domain;
Region: RPE3; TIGR03775"
/db_xref="CDD:163487"
misc_feature 514248..515531
/locus_tag="RCA_02225"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 514785..515510
/locus_tag="RCA_02225"
/note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid, including
proline, that is linked with proline; Region: APP;
cd01085"
/db_xref="CDD:29970"
misc_feature order(515040..515042,515100..515102,515133..515135,
515337..515339,515421..515423,515463..515465)
/locus_tag="RCA_02225"
/note="active site"
/db_xref="CDD:29970"
gene 515785..515859
/locus_tag="RCA_t05313"
/db_xref="GeneID:11860764"
tRNA 515785..515859
/locus_tag="RCA_t05313"
/product="tRNA-Gln"
/db_xref="GeneID:11860764"
gene complement(515977..516053)
/locus_tag="RCA_t05315"
/db_xref="GeneID:11860765"
tRNA complement(515977..516053)
/locus_tag="RCA_t05315"
/product="tRNA-Arg"
/db_xref="GeneID:11860765"
gene complement(516084..517067)
/locus_tag="RCA_02230"
/db_xref="GeneID:11860766"
CDS complement(516084..517067)
/locus_tag="RCA_02230"
/note="COG0142 Geranylgeranyl pyrophosphate synthase"
/codon_start=1
/transl_table=11
/product="octaprenyl-diphosphate synthase"
/protein_id="YP_005299501.1"
/db_xref="GI:379022840"
/db_xref="GeneID:11860766"
/translation="MNIIVKIQQDLKEEVTKLNNLIISCLKSDEGLIEIVGKYLLEAG
GKRIRPLLTIITAKMFDYTGDNHIKLASAVEFIHTATLLHDDVVDDSTLRRFKPTANV
IWGSKTSILVGDFLFSQSFKLMVAAGSIKAMNILAKASAIISEGEVVQLVKLNERRII
TIDEYQQIVKSKTAELFGASCKVGAIIAEQVDHVSKDMQDFGKLLGTIFQVIDDLLDY
LGDDKQVGKNIGDDFLEGKVTLPLIFLYNTLEQDKQLWLQNVIKCDKRTNEEFIKVRN
LMIEHEIYNETVNYLSNLENETSKLLNKIPVQNIYKDYLFSIMRFILDRSY"
misc_feature complement(516087..517052)
/locus_tag="RCA_02230"
/note="Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism]; Region: IspA; COG0142"
/db_xref="CDD:30491"
misc_feature complement(516093..516986)
/locus_tag="RCA_02230"
/note="Trans-Isoprenyl Diphosphate Synthases,
head-to-tail; Region: Trans_IPPS_HT; cd00685"
/db_xref="CDD:173833"
misc_feature complement(order(516357..516359,516372..516374,
516387..516389,516417..516419,516426..516431,
516540..516542,516549..516554,516618..516620,
516627..516629,516783..516788,516801..516806,
516810..516818,516822..516830,516837..516839))
/locus_tag="RCA_02230"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:173833"
misc_feature complement(516801..516830)
/locus_tag="RCA_02230"
/note="chain length determination region; other site"
/db_xref="CDD:173833"
misc_feature complement(order(516357..516359,516372..516374,
516387..516389,516417..516419,516426..516431,
516552..516554,516618..516620,516783..516788,
516801..516803,516810..516815))
/locus_tag="RCA_02230"
/note="substrate-Mg2+ binding site; other site"
/db_xref="CDD:173833"
misc_feature complement(order(516426..516431,516552..516554,
516783..516788,516801..516803,516810..516815))
/locus_tag="RCA_02230"
/note="catalytic residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(516552..516554,516618..516620,
516783..516788,516801..516803,516810..516815))
/locus_tag="RCA_02230"
/note="aspartate-rich region 1; other site"
/db_xref="CDD:173833"
misc_feature complement(order(516351..516365,516372..516389,
516405..516410,516753..516797))
/locus_tag="RCA_02230"
/note="active site lid residues [active]"
/db_xref="CDD:173833"
misc_feature complement(order(516357..516359,516372..516374,
516387..516389,516417..516419,516426..516431))
/locus_tag="RCA_02230"
/note="aspartate-rich region 2; other site"
/db_xref="CDD:173833"
gene complement(517179..518840)
/locus_tag="RCA_02235"
/db_xref="GeneID:11860767"
CDS complement(517179..518840)
/locus_tag="RCA_02235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299502.1"
/db_xref="GI:379022841"
/db_xref="GeneID:11860767"
/translation="MKKTFKIILFISIFIILAYSGLWFAIMLSVSHSINQKYAGTDLN
IEEADNNPNQQYLIKFSKVQPYGFPFKWGISVINWQEESINRAIEFTSPINIGYDLLK
QNLFIHFSGEAFGRFKPVQRGFGVRFYNDNCILSAKIPLNFKLFKIVWSKKNLFEIIN
FIKKITFNSGKTEIFDLVDNQKLYEEDHTIFTMLFDKSKYYTNKQDFLENIPQKLEIY
YETEIIQSNLEDRIIPAGLLLYRLAWNNNFKFSGNFLISTSSLHFKDIAKDLIIEVTN
AKINSNGFENNINLLYKGKLNDFGNNNIDLLLDTKFKLKHGFIIGLLEVIKKYYDKQD
YLFKISDNKIYQGLHNELSYILNNNKQYNFSILEDRQYNFHLNINLVTELNKLTRAQI
NSLSLYSNASGFNITNETIINALKDSYSKGVIIINNYAKIIDVISPYIYGVGNFKNFP
EESKKVYGDTLKSFLKTISDHPNSSNLIDASIEYVFDLSDLNKTKIGTIDDINKLIPL
YYLSLYQAAAKKVKPGENIKDKIMELIPNANQKILEQCILDELEL"
gene complement(519002..520513)
/locus_tag="RCA_02240"
/db_xref="GeneID:11860768"
CDS complement(519002..520513)
/locus_tag="RCA_02240"
/note="COG3202 ATP/ADP translocase"
/codon_start=1
/transl_table=11
/product="ADP,ATP carrier protein"
/protein_id="YP_005299503.1"
/db_xref="GI:379022842"
/db_xref="GeneID:11860768"
/translation="MLPPKIFFEKVKEIIWPIERNELKLFIPMALMMLCILFNFGALR
SIKDSLVVPSMGAEIISFLKLWLVLPSCVIFTILYVKLSNKLNFEYIFYVIVGSFLLF
FLLFAYIIYPNQDIYHPNDEMINNLIASYPNFKWFIKIGSKWSYALMYIFSELWSAVV
INLMFWQFANHIFDTSKAKRFYPVLGMVGNIGLIIAGSVLVFFSSGHGIIDSELLPDS
FNSSYQNAIMLQPIMSIIVTAGIIAILLFRIINRLILTDSINVLDVKKVTAKTKTKLS
VIESIKLVIQSKYIGRIALLIICYGLLINIVEGPWKAKIKALYPNTVDYVNFMGRFNI
WMGISCVTFMVIGSNILRRLGWLISALLTPIMLSITGLIFFIFIIFIEEIPSYFGVGD
FNLLYAAIIVGAIQNILSKSSKYSLFDSTKEIAYIPLSLELRTKGKAAVEVIGTKFGK
SLGAFIQSLIFIIIPTATFDSIIIYLLVIFIVMMSLWIWNVIKLNKEYIELCT"
misc_feature complement(519020..520513)
/locus_tag="RCA_02240"
/note="TLC ATP/ADP transporter; Region: TLC; pfam03219"
/db_xref="CDD:146045"
misc_feature complement(519008..520507)
/locus_tag="RCA_02240"
/note="ATP/ADP translocase [Energy production and
conversion]; Region: COG3202"
/db_xref="CDD:33015"
gene 521077..522327
/locus_tag="RCA_02245"
/db_xref="GeneID:11860769"
CDS 521077..522327
/locus_tag="RCA_02245"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="AmpG protein"
/protein_id="YP_005299504.1"
/db_xref="GI:379022843"
/db_xref="GeneID:11860769"
/translation="MLNNSCLCIIWLFGFISGFNLMITGNTLNYWLARENIALQTIGI
LSFITLPYSINFLLAPVFDALQIKYLNKIFGHRLSWICLTSSALVFLVYIFSFLDPRT
NLLLFAFTALIISFFSAVQDTILSALRTEIVPKESLVFTSGIYICGYRVGMLLAGSGA
IYLSIYLTFNAIYKIFAGLVFIYLILLIVGIKYCYLNENNIQIIKNDIKNNQNKKNII
NFIYNALQPIGSVYFIILILIFLVLYRLPDNLINVMINPFLLHLGYDAFEIASVGKFW
GVVGAIIGGLVGGVIMKHKNILNSILLFGIIHALGHIVFIFLEINGKSSLLLFITIGI
ESITGGMTMTTYIAFISSLCQGKFRATQYSFLSSMMGISRSIFPIISGYIVVNFGWQN
FFLFTTIITIPSLLILLKLKTKLQ"
misc_feature 521101..>522246
/locus_tag="RCA_02245"
/note="muropeptide transporter; Validated; Region: ampG;
PRK11010"
/db_xref="CDD:182898"
misc_feature 521128..522192
/locus_tag="RCA_02245"
/note="AmpG-like permease; Region: 2A0125; TIGR00901"
/db_xref="CDD:162099"
gene 522851..523492
/locus_tag="RCA_02250"
/db_xref="GeneID:11860770"
CDS 522851..523492
/locus_tag="RCA_02250"
/note="COG1279 Lysine efflux permease"
/codon_start=1
/transl_table=11
/product="lysine efflux permease"
/protein_id="YP_005299505.1"
/db_xref="GI:379022844"
/db_xref="GeneID:11860770"
/translation="MNNDILSAFLHGIVLALGLIVPLGVQNIFIFNQGAKQPKFSKVL
PSIIAASICDTILICMAVLGISLLILEIPWLKLFIFIVGFIFLIYIVYNTWNQLPIDL
TTNSQAFSTKKQILFAISVSILNPHAIMDTIVIIGTSALKYNGSAKIIFTLTCILISW
IWFFSLAVAGYNIRKLNKSSTILMMINKIAAIIIWVVAVYIGVQLLHEIGFIN"
misc_feature 522863..523414
/locus_tag="RCA_02250"
/note="Lysine efflux permease [General function prediction
only]; Region: COG1279"
/db_xref="CDD:31470"
gene 523470..524150
/locus_tag="RCA_02255"
/db_xref="GeneID:11860771"
CDS 523470..524150
/locus_tag="RCA_02255"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299506.1"
/db_xref="GI:379022845"
/db_xref="GeneID:11860771"
/translation="MKSVLLTRSLEENRKIIKEMSKSNLDLHYIHCPLIKYKILDFNV
NILANYSNIIITSKYAAIIITKHYINQNIWVVGNTSKKLLENKGLKVTYTAKNLEDLI
EHFPPKLYEQTIYLSSNKITKDLPNEIARHIIYSVEYLNELPVSIIKEFEKNIDFILC
YSQNSAKTLVKLLLQNNLLQYVQESLVVAISLKVANIVRPFTKNVVYCDDQNPNDIIK
LLSDNAKI"
misc_feature 523479..524129
/locus_tag="RCA_02255"
/note="Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the biosynthesis
of heme. This ubiquitous enzyme is present in eukaryotes,
bacteria and archaea. Mutations in...; Region: HemD;
cd06578"
/db_xref="CDD:119440"
misc_feature order(523491..523493,523638..523646,523704..523706,
523821..523823,523872..523874,523878..523880,
523950..523964)
/locus_tag="RCA_02255"
/note="active site"
/db_xref="CDD:119440"
gene 524137..524919
/locus_tag="RCA_02260"
/db_xref="GeneID:11860772"
CDS 524137..524919
/locus_tag="RCA_02260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299507.1"
/db_xref="GI:379022846"
/db_xref="GeneID:11860772"
/translation="MQKFNSLFKSKNIFFTAIVIFVLSFSTFYHNRADILKLFKSDAK
DLSQTFYTVEESKLNISEEKNEAPLLSTKSLLNYVSSLKFPEALLPEQKIETIVNAAL
SGYKEQGAKPITNRKVTNGTIGMLKSIDYTADTSKIYTIGYIHYLLNVNLLVYNFMQD
KDYSKELRIVKSHLLPQDIRNILNNLEAYNNNYLFSKSSSTQVIFPTHHKWLEKFIKI
EKKSSGMIIKEQDKNLILEKLNYLIDFLYSEKFMQEFINQDV"
misc_feature 524425..524529
/locus_tag="RCA_02260"
/note="Rickettsial palindromic element RPE2 domain;
Region: RPE2; TIGR03774"
/db_xref="CDD:163486"
gene 524912..525925
/locus_tag="RCA_02265"
/db_xref="GeneID:11860773"
CDS 524912..525925
/locus_tag="RCA_02265"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299508.1"
/db_xref="GI:379022847"
/db_xref="GeneID:11860773"
/translation="MFRLLLICATFLLFYFGFTLIESFDSKVFISLYDYNIETTLFFN
LILGLILLISCFIVIRFLILIIELPSKIHNIFHKRKVNHDRYALILAFAEYIMSNKAK
SASIARTNLSSEDLKDSQEFHNLILAVTEEDIDTKISYFQKLMKSKEFAFYGSKNLAK
LYYDKSLYEEAQNYAIKAYNLNELDSDNLITLMHCYGKLSLWTKFTFITNKLTKFHKY
DSIKQMHAIVEYYLLAAKQEVESNNIAHAIDYLETAIDLNFYNGELLEFYFTLNNKLN
VNKKTKILKDAFRMVPSLKLVQLFKKFTSLSDRQIYKELTQELDAKKDEILILAIEAY
LEL"
misc_feature 524987..525310
/locus_tag="RCA_02265"
/note="HemY protein N-terminus; Region: HemY_N; pfam07219"
/db_xref="CDD:191703"
gene complement(526098..526814)
/locus_tag="RCA_02270"
/db_xref="GeneID:11860774"
CDS complement(526098..526814)
/locus_tag="RCA_02270"
/note="COG2945 Predicted hydrolase of the alpha/beta
superfamily"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_005299509.1"
/db_xref="GI:379022848"
/db_xref="GeneID:11860774"
/translation="MPQIYFNGPEGRIEGRYAKATSPNAPIALVLHPHPLYEGNMNNK
VVYNAYKILADNGYTVLRINFRGVGGSQGKFDNGVGEVVDAGAALDWLQQNNPNAQSS
LILGFSFGAWIAMQLVMRRPEINHFIAISPPVNTIHKYDFSFLSPCPIPGFILQGDND
SIVSADDVKNLANRLSKQQSHIKVDYKIITGADHFFRYKTEEFAKAIKDYLITIQSNY
HHNNNINEETSKNQKKLFLY"
misc_feature complement(526164..526814)
/locus_tag="RCA_02270"
/note="Predicted hydrolase of the alpha/beta superfamily
[General function prediction only]; Region: COG2945"
/db_xref="CDD:32768"
misc_feature complement(526200..526661)
/locus_tag="RCA_02270"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 526920..527078
/locus_tag="RCA_02275"
/db_xref="GeneID:11860775"
CDS 526920..527078
/locus_tag="RCA_02275"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299510.1"
/db_xref="GI:379022849"
/db_xref="GeneID:11860775"
/translation="MTYAAIYTKINSFDIKIVITRGQGFKKLIELLSTKSPFVKYRDH
NLIGNFWV"
gene complement(527228..527668)
/locus_tag="RCA_02280"
/db_xref="GeneID:11860776"
CDS complement(527228..527668)
/locus_tag="RCA_02280"
/note="COG5622 Protein required for attachment to host
cells"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299511.1"
/db_xref="GI:379022850"
/db_xref="GeneID:11860776"
/translation="MVITAPLKLIAVIDSKHMMLYDAQGVKITTNKPLKLSLYLEEHH
HHRKKRQSFYQNKSTPGSLFEPHTSLREIEHKEAAKSVIKHLEKIARNDQAKYKELII
VAEPQILGCIRQELKNGLKKMITKEIAKGLVQHSVDAVERAVFA"
misc_feature complement(527231..527668)
/locus_tag="RCA_02280"
/note="Protein required for attachment to host cells;
Region: Host_attach; cl02398"
/db_xref="CDD:154891"
gene complement(527710..528447)
/locus_tag="RCA_02285"
/db_xref="GeneID:11860777"
CDS complement(527710..528447)
/locus_tag="RCA_02285"
/note="COG0204 1-acyl-sn-glycerol-3-phosphate
acyltransferase"
/codon_start=1
/transl_table=11
/product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
/protein_id="YP_005299512.1"
/db_xref="GI:379022851"
/db_xref="GeneID:11860777"
/translation="MLWRLRILSFYGLLSLFTFIVFLICYIPVTYFNVNYQIRYKIAL
IFSYAFVWLAKICCGLKYEVEGLEKLPTTISIVVSNHQSFWDQMFMQLIIPKHSWVLK
RELFNIPLLGWGLRMVKPIAVDRGTNSSVAQILREGQEKIKEGLWLIIFPESTKVPPD
RIVKFKPSAVKLASITKVPIVMMAHNAGLFWPRGFWFKQPGTIKVKIIGVIAKEEVEQ
TDVRILNDKVEQIINSEKQKLLGFKNN"
misc_feature complement(527749..528420)
/locus_tag="RCA_02285"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:30553"
misc_feature complement(527761..528279)
/locus_tag="RCA_02285"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(527980..527988,528136..528147,
528190..528192,528196..528198,528205..528207))
/locus_tag="RCA_02285"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene 528525..529517
/locus_tag="RCA_02290"
/db_xref="GeneID:11860778"
CDS 528525..529517
/locus_tag="RCA_02290"
/EC_number="6.1.1.2"
/note="COG0180 Tryptophanyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_005299513.1"
/db_xref="GI:379022852"
/db_xref="GeneID:11860778"
/translation="MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLH
SITVDIKPSELNNSIMEVIALYIAAGLEADKVTIFAQSMVKEHSELAWLLSCVTSLGW
LKRMIQFKDKAGSDQEKACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIA
GMINRKFNKEILKVPEPLINGSGTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQ
KIKKAKTDHLSFVSYDKKTRPEISNLLDIYRSLSKESLEKIIANYQNQGFAKFKEDLA
EIIITNLQPIRDKYLELMNNKEYLLKILHKGAEKAKIRASETVNEVKEQFGFII"
misc_feature 528525..529505
/locus_tag="RCA_02290"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature 528534..529364
/locus_tag="RCA_02290"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature order(528540..528554,528570..528572,528576..528581,
528588..528590,528639..528641,528654..528656,
528765..528767,528903..528905,528915..528917,
528924..528926,528951..528953,528957..528962,
528966..528971,528978..528980,529077..529079,
529107..529112,529116..529118)
/locus_tag="RCA_02290"
/note="active site"
/db_xref="CDD:173903"
misc_feature 528570..528581
/locus_tag="RCA_02290"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature order(528651..528653,528660..528665,528783..528788,
528792..528800,528807..528812,528816..528827,
528831..528836,528891..528893,528897..528902,
528909..528914)
/locus_tag="RCA_02290"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature 529107..529121
/locus_tag="RCA_02290"
/note="KMSKS motif; other site"
/db_xref="CDD:173903"
gene 529577..529667
/locus_tag="RCA_t05317"
/db_xref="GeneID:11860779"
tRNA 529577..529667
/locus_tag="RCA_t05317"
/product="tRNA-Ser"
/db_xref="GeneID:11860779"
gene complement(531193..532098)
/gene="hemC"
/locus_tag="RCA_02295"
/db_xref="GeneID:11860780"
CDS complement(531193..532098)
/gene="hemC"
/locus_tag="RCA_02295"
/EC_number="2.5.1.61"
/note="COG0181 Porphobilinogen deaminase"
/codon_start=1
/transl_table=11
/product="porphobilinogen deaminase"
/protein_id="YP_005299514.1"
/db_xref="GI:379022853"
/db_xref="GeneID:11860780"
/translation="MTHSIRIGTRKSPLALIQTNLVIQQIKQFVPDINYKIVPITTSG
DLIQNKPLYDIGGKALFLKEIEQALLDKKIDLAVHSLKDVPGRIPEDLIIAAVLERED
PRDVFVCLKYKSIEELPQNAIIGSSAVRRKAFIEKIRSDLKVTVFRGNVDSRIKKLMN
GEVDATILAYAGLKRLNAFNPQYCHLIEYSQMLPCIGQGVIAVEIRKDDNAMLETCNQ
INHLTTFELIKPERAFLEYLDANCRTPIAAYSKYLDKDNIETDFMLGNLESSKITFHT
ETTNIKTSKEAGIKAAKIMLSELER"
misc_feature complement(531208..532098)
/gene="hemC"
/locus_tag="RCA_02295"
/note="porphobilinogen deaminase; Reviewed; Region: hemC;
PRK00072"
/db_xref="CDD:178840"
misc_feature complement(531208..532086)
/gene="hemC"
/locus_tag="RCA_02295"
/note="Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of...; Region: HMBS;
cd00494"
/db_xref="CDD:29604"
misc_feature complement(order(531277..531279,531283..531285,
531292..531294,531301..531303,531316..531318,
531355..531357,531361..531363,531373..531375,
531394..531396,531403..531408,531418..531420,
531427..531429,531448..531450,531502..531525,
531574..531579,531586..531588,531649..531651,
531688..531690,531700..531705,531709..531711,
531784..531801,531805..531810,531835..531837,
531841..531858,532048..532050,532063..532065))
/gene="hemC"
/locus_tag="RCA_02295"
/note="domain interfaces; other site"
/db_xref="CDD:29604"
misc_feature complement(order(531373..531375,531502..531507,
531514..531516,531574..531576,531583..531585,
531592..531600,531637..531639,531658..531660,
531706..531711,531715..531723,531850..531855,
531859..531861,532045..532047,532057..532059))
/gene="hemC"
/locus_tag="RCA_02295"
/note="active site"
/db_xref="CDD:29604"
gene complement(532095..532319)
/locus_tag="RCA_02300"
/db_xref="GeneID:11860781"
CDS complement(532095..532319)
/locus_tag="RCA_02300"
/codon_start=1
/transl_table=11
/product="microcin C7 resistance protein"
/protein_id="YP_005299515.1"
/db_xref="GI:379022854"
/db_xref="GeneID:11860781"
/translation="MVNISKVSGGNITGKIIGLIIKDFCLKHIQNIEAYTAEGIGHSE
INHPIIMNHEVMISDSVLSFTSPFEIIENK"
misc_feature complement(532104..>532289)
/locus_tag="RCA_02300"
/note="LD-Carboxypeptidase, a serine protease, includes
microcin C7 self immunity protein; Region: Peptidase_S66;
cl00700"
/db_xref="CDD:207173"
gene complement(532526..532654)
/locus_tag="RCA_02305"
/db_xref="GeneID:11860782"
CDS complement(532526..532654)
/locus_tag="RCA_02305"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299516.1"
/db_xref="GI:379022855"
/db_xref="GeneID:11860782"
/translation="MLPLQRFKTLVDVFQVIALAFFVDTKAERESIFKESHGKGTG"
gene complement(533256..533537)
/locus_tag="RCA_02310"
/db_xref="GeneID:11860783"
CDS complement(533256..533537)
/locus_tag="RCA_02310"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="alkaline phosphatase synthesis sensor protein
phor (phor)"
/protein_id="YP_005299517.1"
/db_xref="GI:379022856"
/db_xref="GeneID:11860783"
/translation="MIRFNEDQRCNALEIIATSSIRLNSLINNILDFSKLSSLNYKEN
INLSKLLYKRIQISKKLYLNSKTLNFTPDIEENIIFNCNPHYIKHTFNN"
misc_feature complement(533424..>533525)
/locus_tag="RCA_02310"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cl00080"
/db_xref="CDD:206823"
misc_feature complement(<533259..>533522)
/locus_tag="RCA_02310"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(order(533448..533450,533460..533462,
533469..533471,533481..533483,533490..533492,
533502..533504))
/locus_tag="RCA_02310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
gene complement(535477..536307)
/locus_tag="RCA_02315"
/db_xref="GeneID:11860784"
CDS complement(535477..536307)
/locus_tag="RCA_02315"
/note="COG0354 Predicted aminomethyltransferase related to
GcvT"
/codon_start=1
/transl_table=11
/product="glycine cleavage T-protein"
/protein_id="YP_005299518.1"
/db_xref="GI:379022857"
/db_xref="GeneID:11860784"
/translation="MYEILSDREVIKIIGLDSVKFLQNLVTNDIKKSKYCYTYLLNNK
GKYLFDFFVYIHNFEELYLDIDKSNKATLIDHLNFYKFRSKIQIIDCHDKYKVIYSHQ
KLDIDTLVTSRDPRYTKLGFRSIVNGTLKDTLDPLCHSREDKNPIYLEDKYNFAIIDG
VEDLSFNKSIPILYGGEELNGISYYKGCYVGQEVISRAKYQGIIRRKIYKVIADEDLS
SLVKDEEILADNDTIGVICSSYHNKAIALIRVEKYLAVKESGITAKGISIELSLAPWY
"
misc_feature complement(535480..536307)
/locus_tag="RCA_02315"
/note="Predicted aminomethyltransferase related to GcvT
[General function prediction only]; Region: COG0354"
/db_xref="CDD:30703"
misc_feature complement(535669..535839)
/locus_tag="RCA_02315"
/note="folate-binding protein YgfZ; Region:
ygfZ_signature; TIGR03317"
/db_xref="CDD:163214"
misc_feature complement(<535552..535749)
/locus_tag="RCA_02315"
/note="Glycine cleavage T-protein C-terminal barrel
domain; Region: GCV_T_C; pfam08669"
/db_xref="CDD:204020"
gene 536423..537214
/locus_tag="RCA_02320"
/db_xref="GeneID:11860785"
CDS 536423..537214
/locus_tag="RCA_02320"
/note="COG1723 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299519.1"
/db_xref="GI:379022858"
/db_xref="GeneID:11860785"
/translation="MIDLVTNLKKIGLEPQHFDDVLYIRKEINKDSDFIEIFFFPFGC
VTIWGGDEIQEKIILSDTDLVTVNKLKEPVSDYIYCEYNTEVEKTFIDEEKNKIILAD
KSIFVKLSISYALAQSVKLSVLEQSVSNLIVQTTPIQQELARTGSVSLSKKEILQQIG
ILFNERYSISLHSDIFDTPEFFWRRPSYEPLYLMTAEFQDIEIRQNIMNHRLNMIHEL
LNILSNDLNYKHSTKLEWIIIILIGLEVVLSLSHTNLFLKIIGAL"
misc_feature <536423..537121
/locus_tag="RCA_02320"
/note="Uncharacterized ACR, YagE family COG1723; Region:
DUF155; cl00751"
/db_xref="CDD:193927"
gene 537225..538079
/locus_tag="RCA_02325"
/db_xref="GeneID:11860786"
CDS 537225..538079
/locus_tag="RCA_02325"
/note="COG0349 Ribonuclease D"
/codon_start=1
/transl_table=11
/product="ribonuclease D"
/protein_id="YP_005299520.1"
/db_xref="GI:379022859"
/db_xref="GeneID:11860786"
/translation="MQMIDNQKTLEEVCKQLASKTCLSIDTEFERRYTYYAQLSIIQV
KAENYCGIIDALSNVDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPSNVFDIQ
IAANICGFGKQLSYDDLCYKLFGIAIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKI
YKELNNIIIRSNLVNKYQTTLGSLLDVRNYKVEPKDAWKKIKYRSDDKSFNRRIQILA
AYREKNAQTIDIPRKHFILDEDLIKLCKYLPVTNKDFKNLNLKSKYLYKQKYKDEIIS
LCNNFFML"
misc_feature 537234..>537989
/locus_tag="RCA_02325"
/note="Ribonuclease D [Translation, ribosomal structure
and biogenesis]; Region: Rnd; COG0349"
/db_xref="CDD:30697"
misc_feature 537252..537743
/locus_tag="RCA_02325"
/note="DEDDy 3'-5' exonuclease domain of Ribonuclease D
and similar proteins; Region: RNaseD_exo; cd06142"
/db_xref="CDD:176654"
misc_feature order(537300..537311,537456..537461,537465..537473,
537567..537572,537669..537671,537681..537683)
/locus_tag="RCA_02325"
/note="putative active site [active]"
/db_xref="CDD:176654"
misc_feature order(537300..537302,537306..537308,537471..537473,
537669..537671,537681..537683)
/locus_tag="RCA_02325"
/note="catalytic site [active]"
/db_xref="CDD:176654"
misc_feature order(537303..537311,537456..537461,537465..537470,
537567..537572,537669..537671,537681..537683)
/locus_tag="RCA_02325"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176654"
misc_feature 537843..>537989
/locus_tag="RCA_02325"
/note="HRDC domain; Region: HRDC; cl02578"
/db_xref="CDD:207658"
gene complement(538178..538699)
/locus_tag="RCA_02330"
/db_xref="GeneID:11860787"
CDS complement(538178..538699)
/locus_tag="RCA_02330"
/note="COG0212 5-formyltetrahydrofolate cyclo-ligase"
/codon_start=1
/transl_table=11
/product="5-formyltetrahydrofolate cyclo-ligase"
/protein_id="YP_005299521.1"
/db_xref="GI:379022860"
/db_xref="GeneID:11860787"
/translation="MNKQELRIYFKDLLIKTQEKITSGLVRHSLISKISHLLKKLEIQ
TVGLYYPLKYEINLLEITNLHPEIKFFLPKIIKNEIQYCPYHYKDSLALGNFKTFEPI
NNDLFIPELVIIPGLAFSSDGYRLGYGKGHFDQYLNNNPNILTAGVCLKEQLINNFPV
ESHDIKLKFVISV"
misc_feature complement(538184..538699)
/locus_tag="RCA_02330"
/note="5-formyltetrahydrofolate cyclo-ligase [Coenzyme
metabolism]; Region: COG0212"
/db_xref="CDD:30561"
gene complement(538750..540129)
/locus_tag="RCA_02335"
/db_xref="GeneID:11860788"
CDS complement(538750..540129)
/locus_tag="RCA_02335"
/EC_number="1.8.1.4"
/note="COG1249 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide dehydrogenase (E3) component,
and related enzymes"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_005299522.1"
/db_xref="GI:379022861"
/db_xref="GeneID:11860788"
/translation="MQEFDLVVIGSGPAGYTGSIRAAQLNMKVACIEKNDALGGTCLN
IGCIPSKALLHSSKKYEEALKHFESIGITGEIKLDLQKMLVNKDKLVLNLTKGIESLF
AKNKVTRIKGEAKIISNNIVEVNNEQIKAKNILITTGSSIIEIPNIKIDEEFIVSSTG
ALKLSKVPENLIVVGGGYIGLELGSVWRRLGAKVIVVEYAASIVPMLDKEIAMQFMKL
QQKQGIQFKLNTKVLSAEVKSGKVNLTIEEGGKNVVITSDVVLIAVGRKAYTQNLGLE
SVGIITDKQGRIEINDHFQTAVSNIYAVGDVVKGAMLAHKAEEEAVAAVEIIAGHTGH
VNYNLIPSVIYTYPEVASVGETEEQLKEKGINYTVGKFPFLANSRARVIGSTEGMVKI
LADSKTDKVLGAHIIGADAGTLIAELTAYMEFGAAAEDIARTCHAHPTLSEAIKEAAL
SVDKRTINM"
misc_feature complement(538753..540129)
/locus_tag="RCA_02335"
/note="dihydrolipoamide dehydrogenase; Validated; Region:
PRK06327"
/db_xref="CDD:180529"
misc_feature complement(<540004..540108)
/locus_tag="RCA_02335"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature complement(539377..539622)
/locus_tag="RCA_02335"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature complement(538783..539112)
/locus_tag="RCA_02335"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene complement(540288..540860)
/locus_tag="RCA_02340"
/db_xref="GeneID:11860789"
CDS complement(540288..540860)
/locus_tag="RCA_02340"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="biotin synthesis protein BioC"
/protein_id="YP_005299523.1"
/db_xref="GI:379022862"
/db_xref="GeneID:11860789"
/translation="MSPLLLDSFNHDRKLLIDDEDLEFPSNSFDLIVYSLGLHWINDV
QRFLSNIRTFLKPEGIFIGNFVGGDSLKNLRKVLIEAEIMSNFAHSPHISPFIHFDHV
PILFSQTGFAEVIVDYENISLEFDNPLALMREIKNIGESNSLDLRHNYTISKKMFFLL
QNYTNFFKDNINLISFIASPNKNSIRLKLL"
misc_feature complement(540357..>540818)
/locus_tag="RCA_02340"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(541190..541828)
/locus_tag="RCA_02345"
/db_xref="GeneID:11860790"
CDS complement(541190..541828)
/locus_tag="RCA_02345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299524.1"
/db_xref="GI:379022863"
/db_xref="GeneID:11860790"
/translation="MNKNFNIYILRYCYAKINKVFTGRAISISKKSYNLQLKRAKIDY
LKFLFIEPKLIACFLILVSTVANADFNNIHENFECQEAQVIIKLPWSDCTKIHKLLEE
KLSFSEQQIKKEKKIHEKYKQYYLKHNNRANFSMQFLEKKSETNAVETLISGFLKFCK
DNFQTSNSKSNSLNYHIKKQQEQWFNDMQNENYKIYYRKKYKNDIIRNNFNA"
misc_feature complement(541256..541672)
/locus_tag="RCA_02345"
/note="Protein of unknown function (DUF2532); Region:
DUF2532; pfam10811"
/db_xref="CDD:151261"
gene complement(541849..542700)
/locus_tag="RCA_02350"
/db_xref="GeneID:11860791"
CDS complement(541849..542700)
/locus_tag="RCA_02350"
/note="COG0741 Soluble lytic murein transglycosylase and
related regulatory proteins (some contain LysM/invasin
domains)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299525.1"
/db_xref="GI:379022864"
/db_xref="GeneID:11860791"
/translation="MIWKNNRSSRGGATGSNKNVKAKYIIFFLDSRLRGNDIREVRNN
IRKWVHDTIIILILLFSFIFFSKPAIADPEIAESFKCSKLFPYFEKKFNIPSNTLHSI
ALKESGKQHTTHKIRVVWPWTVNVRGKGYYFNNKREAVRFVRIELIKGNESIDVGCMQ
INLRHHLEAFNSLDQAFDPNHNIRYGAKFLRSKYEQLGSWHKAIAHYHSANYSLGFKY
KQDVVKIASNMALYKASLHSYLKNNEVVVENKISVNNNKVHKKSLFSSNQRYRSSIMI
PIPAKIN"
misc_feature complement(541927..>542490)
/locus_tag="RCA_02350"
/note="Soluble lytic murein transglycosylase and related
regulatory proteins (some contain LysM/invasin domains)
[Cell envelope biogenesis, outer membrane]; Region: MltE;
COG0741"
/db_xref="CDD:31084"
misc_feature complement(542011..542259)
/locus_tag="RCA_02350"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature complement(order(542080..542082,542134..542136,
542215..542217))
/locus_tag="RCA_02350"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
gene complement(544118..544408)
/locus_tag="RCA_02355"
/db_xref="GeneID:11860792"
CDS complement(544118..544408)
/locus_tag="RCA_02355"
/codon_start=1
/transl_table=11
/product="dihydrolipoamide dehydrogenase"
/protein_id="YP_005299526.1"
/db_xref="GI:379022865"
/db_xref="GeneID:11860792"
/translation="MNKYSLYNFSQETINEIKQNASEWNLEKPYYDEFFVGLSKLVQK
FDLSEIMIKVDYLGKHVSIFNAVGDLEPYTQFAKWAENAIKDEQQCKNKTLS"
gene 544569..544694
/gene="rpmJ"
/locus_tag="RCA_02360"
/db_xref="GeneID:11860793"
CDS 544569..544694
/gene="rpmJ"
/locus_tag="RCA_02360"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="YP_005299527.1"
/db_xref="GI:379022866"
/db_xref="GeneID:11860793"
/translation="MKVVSSLKSLKKRDKDCQIVKRRGKIFVINKKNKRFKAKQG"
misc_feature <544605..544691
/gene="rpmJ"
/locus_tag="RCA_02360"
/note="50S ribosomal protein L36; Validated; Region: rpmJ;
PRK00831"
/db_xref="CDD:179138"
gene 544810..545568
/locus_tag="RCA_02365"
/db_xref="GeneID:11860794"
CDS 544810..545568
/locus_tag="RCA_02365"
/note="COG0217 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299528.1"
/db_xref="GI:379022867"
/db_xref="GeneID:11860794"
/translation="MAGHSKFKNIQYRKGAQDKKRAKIFTKLIREIVTAAKTGSSNNP
ENNPRLRNALTAARSQNLPKERIDKAINSANDASNTENYMEIRYEGYAPSGIAIIVEA
LTDNKNRTAAEVRSSFTKYGGSLGETGSVNYLFKHCGVIQYLSNIVSSENILEAVMEV
DVDDITSDDTIHTIYTDIENFSKVLEFLTSKYGIPEDSYIGWIPLNTIIIDDKEKAEK
LLKLVEVLEESDDVQRVFSNYEISDDVYAIIQGA"
misc_feature 544810..545550
/locus_tag="RCA_02365"
/note="hypothetical protein; Validated; Region: PRK00110"
/db_xref="CDD:178871"
gene 545568..546314
/locus_tag="RCA_02370"
/db_xref="GeneID:11860795"
CDS 545568..546314
/locus_tag="RCA_02370"
/note="COG1207 N-acetylglucosamine-1-phosphate
uridyltransferase (contains nucleotidyltransferase and
I-patch acetyltransferase domains)"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine pyrophosphorylase"
/protein_id="YP_005299529.1"
/db_xref="GI:379022868"
/db_xref="GeneID:11860795"
/translation="MTYNNANYQIIILAAGKGTRMESSLPKVMHKVGGVPMLETVLQN
SLEVTNDVVIVYSEELKKYLTPYENMCRFVLQKEPKGTAHATYAAIDLIDENKIILVL
YGDHPLIIPKLMHELIAYLNLTNSALVTLSFESKNPTWYGRIVTDKNGDFLEIIEYKN
ASEEEKKIKLCNSGIMAFSRGILNQYLPLFANNTTGNQEVYLTEIVKVCKNHGEKVSY
LLSTDHDLIVGVNNKNELEKANNIFSKKNC"
misc_feature 545595..546275
/locus_tag="RCA_02370"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(545604..545612,545730..545732,545811..545813,
545820..545822,545874..545876,545880..545882)
/locus_tag="RCA_02370"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(545880..545882,546258..546260)
/locus_tag="RCA_02370"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
gene 546520..546607
/locus_tag="RCA_t05319"
/db_xref="GeneID:11860796"
tRNA 546520..546607
/locus_tag="RCA_t05319"
/product="tRNA-Ser"
/db_xref="GeneID:11860796"
gene 547302..547412
/locus_tag="RCA_02375"
/db_xref="GeneID:11860797"
CDS 547302..547412
/locus_tag="RCA_02375"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005299530.1"
/db_xref="GI:379022869"
/db_xref="GeneID:11860797"
/translation="MWQQIASYNRNDYFSAKIVNYSHERNMFIGSILKKS"
gene complement(547576..547731)
/locus_tag="RCA_02380"
/db_xref="GeneID:11860798"
CDS complement(547576..547731)
/locus_tag="RCA_02380"
/codon_start=1
/transl_table=11
/product="nucleotide pyrophosphohydrolase"
/protein_id="YP_005299531.1"
/db_xref="GI:379022870"
/db_xref="GeneID:11860798"
/translation="MFHTAILLCIFSGFDVEETLKLTNEKFSKRMKAIKMLTEKHHLY
QICKVNQ"
gene complement(548416..549444)
/locus_tag="RCA_02385"
/db_xref="GeneID:11860799"
CDS complement(548416..549444)
/locus_tag="RCA_02385"
/EC_number="5.3.3.2"
/note="COG1304 L-lactate dehydrogenase (FMN-dependent) and
related alpha-hydroxy acid dehydrogenases"
/codon_start=1
/transl_table=11
/product="isopentenyl pyrophosphate isomerase"
/protein_id="YP_005299532.1"
/db_xref="GI:379022871"
/db_xref="GeneID:11860799"
/translation="MLKNQDLDIERKQEHIEINLTKNIESTLKSGFESIQFIHNALPE
INYDNIDTTTTFLGKALQAPILISSMTGGTARARDINYRLAEAAQKAGIAMGLGSMRV
LLAAADTIKTFAVRHIAPDILLLANIGAVQLNYGVTPKECQYLVDATKADALILHLNV
LQELNQPEGNRNWANLLPKIREVINYLSVPVIVKEVGYGLSKQVAKRLIDVGVKTLDI
AGSGGTSWSQVEAYRAKNSLQNRIASSFINWGIPTLDSLKMVRKISKNVSIIASGGLK
SGIDGAKAIRMGANIFGLAGQLLKAVDNSEYLVSEEIQLIIKQLKITMLCTGSRTLKD
LTKAEIKL"
misc_feature complement(548419..549438)
/locus_tag="RCA_02385"
/note="isopentenyl pyrophosphate isomerase; Provisional;
Region: PRK05437"
/db_xref="CDD:180081"
misc_feature complement(548434..549414)
/locus_tag="RCA_02385"
/note="Isopentenyl-diphosphate:dimethylallyl diphosphate
isomerase type 2 (IDI-2) FMN-binding domain. Two types of
IDIs have been characterized at present. The long known
IDI-1 is only dependent on divalent metals for activity,
whereas IDI-2 requires a metal; Region: IDI-2_FMN;
cd02811"
/db_xref="CDD:73373"
misc_feature complement(order(548491..548493,548500..548502,
548605..548610,548668..548670,548692..548694,
548836..548838,548848..548853,548860..548862,
548971..548973,549313..549315,549322..549333))
/locus_tag="RCA_02385"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73373"
misc_feature complement(order(548557..548559,548623..548631,
548863..548865,548974..548976,549064..549066,
549148..549150,549226..549237))
/locus_tag="RCA_02385"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73373"
misc_feature complement(order(549205..549210,549229..549231))
/locus_tag="RCA_02385"
/note="homodimer contacts [polypeptide binding]; other
site"
/db_xref="CDD:73373"
misc_feature complement(order(548557..548562,548629..548631,
548863..548865,548974..548976,549064..549066,
549148..549150))
/locus_tag="RCA_02385"
/note="putative active site [active]"
/db_xref="CDD:73373"
misc_feature complement(order(548974..548976,549058..549060,
549064..549066))
/locus_tag="RCA_02385"
/note="putative substrate binding site [chemical binding];
